Query 005135
Match_columns 712
No_of_seqs 398 out of 2365
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 18:37:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005135.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005135hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1166 SpeA Arginine decarbox 100.0 2E-137 4E-142 1116.7 50.8 575 61-670 22-651 (652)
2 PRK05354 arginine decarboxylas 100.0 4E-128 8E-133 1105.5 63.9 576 61-670 6-633 (634)
3 TIGR01273 speA arginine decarb 100.0 3E-127 7E-132 1097.2 63.0 572 64-669 1-624 (624)
4 PLN02439 arginine decarboxylas 100.0 1E-111 3E-116 958.5 58.2 520 130-670 1-559 (559)
5 cd06830 PLPDE_III_ADC Type III 100.0 4.7E-76 1E-80 652.8 45.9 397 126-582 3-409 (409)
6 COG0019 LysA Diaminopimelate d 100.0 1.3E-67 2.9E-72 579.0 42.1 390 82-582 2-394 (394)
7 TIGR01048 lysA diaminopimelate 100.0 2.2E-65 4.9E-70 568.6 48.5 413 85-609 3-416 (417)
8 PLN02537 diaminopimelate decar 100.0 2.4E-64 5.2E-69 559.6 46.4 402 103-610 3-408 (410)
9 cd06831 PLPDE_III_ODC_like_AZI 100.0 3E-62 6.6E-67 539.5 41.5 371 126-583 11-382 (394)
10 PRK11165 diaminopimelate decar 100.0 7.6E-62 1.7E-66 540.9 44.9 394 104-609 13-418 (420)
11 cd06836 PLPDE_III_ODC_DapDC_li 100.0 1.6E-62 3.5E-67 539.7 39.0 368 127-583 2-378 (379)
12 cd06810 PLPDE_III_ODC_DapDC_li 100.0 1.2E-61 2.7E-66 529.4 41.1 367 128-582 1-368 (368)
13 cd06840 PLPDE_III_Bif_AspK_Dap 100.0 3.2E-61 6.8E-66 527.6 39.0 357 125-582 9-368 (368)
14 TIGR01047 nspC carboxynorsperm 100.0 2E-60 4.3E-65 523.2 42.7 376 126-608 1-379 (380)
15 KOG0622 Ornithine decarboxylas 100.0 3.2E-61 7E-66 510.7 34.3 396 108-595 36-433 (448)
16 cd06839 PLPDE_III_Btrk_like Ty 100.0 1.7E-60 3.6E-65 523.3 41.3 376 126-582 5-382 (382)
17 cd06828 PLPDE_III_DapDC Type I 100.0 3.5E-60 7.5E-65 518.9 42.9 372 126-582 1-373 (373)
18 TIGR03099 dCO2ase_PEP1 pyridox 100.0 5.5E-60 1.2E-64 522.6 44.0 384 105-582 12-398 (398)
19 cd06841 PLPDE_III_MccE_like Ty 100.0 1.1E-59 2.4E-64 517.2 42.4 368 126-583 5-376 (379)
20 cd06843 PLPDE_III_PvsE_like Ty 100.0 4.2E-59 9.2E-64 512.2 41.3 367 128-582 2-377 (377)
21 cd06829 PLPDE_III_CANSDC Type 100.0 6.5E-59 1.4E-63 505.4 38.7 344 128-582 1-345 (346)
22 cd00622 PLPDE_III_ODC Type III 100.0 4.5E-57 9.8E-62 493.1 40.6 360 127-582 1-362 (362)
23 cd06842 PLPDE_III_Y4yA_like Ty 100.0 4.1E-57 8.8E-62 503.5 38.9 374 108-582 1-423 (423)
24 PRK08961 bifunctional aspartat 100.0 1.1E-55 2.4E-60 528.9 39.1 357 126-583 501-860 (861)
25 PF02784 Orn_Arg_deC_N: Pyrido 100.0 1.1E-45 2.4E-50 384.4 26.0 247 134-415 1-251 (251)
26 cd06808 PLPDE_III Type III Pyr 100.0 7.8E-27 1.7E-31 234.9 24.3 197 138-365 1-197 (211)
27 cd06819 PLPDE_III_LS_D-TA Type 99.9 5.2E-23 1.1E-27 224.7 21.5 252 126-427 5-267 (358)
28 cd06812 PLPDE_III_DSD_D-TA_lik 99.9 2.9E-22 6.3E-27 220.2 25.8 208 126-364 4-219 (374)
29 cd00430 PLPDE_III_AR Type III 99.9 1.8E-21 4E-26 213.3 31.6 245 130-430 3-253 (367)
30 cd06818 PLPDE_III_cryptic_DSD 99.9 3.8E-21 8.2E-26 212.2 25.6 250 126-429 1-261 (382)
31 cd06820 PLPDE_III_LS_D-TA_like 99.8 5E-19 1.1E-23 193.2 25.8 209 126-364 1-213 (353)
32 cd06813 PLPDE_III_DSD_D-TA_lik 99.8 1.5E-18 3.2E-23 192.1 24.7 213 126-360 9-240 (388)
33 cd06821 PLPDE_III_D-TA Type II 99.8 2.1E-18 4.7E-23 188.7 24.2 207 125-363 6-221 (361)
34 PF00278 Orn_DAP_Arg_deC: Pyri 99.8 1.5E-19 3.2E-24 166.3 8.0 94 476-582 23-116 (116)
35 cd06811 PLPDE_III_yhfX_like Ty 99.8 3.7E-17 8E-22 180.6 24.3 218 108-357 13-235 (382)
36 TIGR00492 alr alanine racemase 99.8 9.1E-17 2E-21 176.5 24.6 197 130-360 4-205 (367)
37 PRK00053 alr alanine racemase; 99.7 3.8E-15 8.3E-20 163.5 24.6 197 128-362 3-204 (363)
38 PRK13340 alanine racemase; Rev 99.7 4.5E-15 9.8E-20 165.3 23.9 187 129-351 41-234 (406)
39 cd00635 PLPDE_III_YBL036c_like 99.6 2.3E-14 4.9E-19 147.0 22.8 196 133-358 3-200 (222)
40 cd07376 PLPDE_III_DSD_D-TA_lik 99.6 7.3E-14 1.6E-18 152.2 22.8 196 138-363 2-205 (345)
41 cd06826 PLPDE_III_AR2 Type III 99.6 4.9E-13 1.1E-17 147.1 23.6 196 130-361 3-207 (365)
42 cd06817 PLPDE_III_DSD Type III 99.5 9.4E-12 2E-16 138.0 27.1 209 126-358 4-223 (389)
43 cd06827 PLPDE_III_AR_proteobac 99.5 1.8E-12 3.8E-17 142.1 20.9 155 130-323 3-161 (354)
44 cd06814 PLPDE_III_DSD_D-TA_lik 99.5 7.2E-12 1.6E-16 138.5 25.4 209 125-363 6-230 (379)
45 cd06815 PLPDE_III_AR_like_1 Ty 99.3 1.3E-10 2.7E-15 127.5 22.2 196 128-358 1-198 (353)
46 cd06824 PLPDE_III_Yggs_like Py 99.3 8.1E-10 1.8E-14 113.7 23.9 191 140-357 4-200 (224)
47 PF01168 Ala_racemase_N: Alani 99.3 4.9E-10 1.1E-14 114.0 20.4 188 133-358 1-192 (218)
48 TIGR00044 pyridoxal phosphate 99.2 1.4E-08 3.1E-13 105.0 26.9 198 138-357 4-204 (229)
49 COG3616 Predicted amino acid a 99.0 1.4E-08 3E-13 111.0 19.9 202 125-358 15-218 (368)
50 PRK11930 putative bifunctional 99.0 2.2E-08 4.8E-13 121.3 22.4 214 104-361 442-663 (822)
51 cd06825 PLPDE_III_VanT Type II 98.9 1.7E-07 3.7E-12 103.5 23.8 193 130-362 3-203 (368)
52 PRK03646 dadX alanine racemase 98.7 9.1E-07 2E-11 97.4 20.7 154 130-322 5-162 (355)
53 COG0787 Alr Alanine racemase [ 98.5 1.3E-05 2.8E-10 87.9 23.2 190 131-360 7-201 (360)
54 COG3457 Predicted amino acid r 98.4 2.3E-05 5.1E-10 83.0 19.7 194 128-356 3-201 (353)
55 cd06822 PLPDE_III_YBL036c_euk 98.4 0.00015 3.2E-09 75.1 24.1 174 160-357 22-204 (227)
56 COG0325 Predicted enzyme with 98.3 0.00023 4.9E-09 73.0 23.2 194 138-356 3-200 (228)
57 KOG3157 Proline synthetase co- 96.0 0.023 4.9E-07 57.4 7.9 160 136-322 9-173 (244)
58 cd03174 DRE_TIM_metallolyase D 92.0 6.8 0.00015 40.8 16.4 165 125-322 8-202 (265)
59 PRK08195 4-hyroxy-2-oxovalerat 89.5 11 0.00023 41.7 15.6 132 167-322 58-201 (337)
60 cd07948 DRE_TIM_HCS Saccharomy 89.2 24 0.00053 37.5 17.6 137 162-322 39-196 (262)
61 cd07937 DRE_TIM_PC_TC_5S Pyruv 89.0 14 0.0003 39.5 15.6 104 195-322 93-204 (275)
62 cd07939 DRE_TIM_NifV Streptomy 88.1 11 0.00024 39.8 14.1 137 162-322 37-194 (259)
63 cd07943 DRE_TIM_HOA 4-hydroxy- 87.0 28 0.0006 36.8 16.3 107 193-322 85-197 (263)
64 TIGR03217 4OH_2_O_val_ald 4-hy 86.2 40 0.00086 37.2 17.5 131 168-322 58-200 (333)
65 PRK11858 aksA trans-homoaconit 86.2 29 0.00064 38.8 16.7 135 162-322 43-200 (378)
66 cd07940 DRE_TIM_IPMS 2-isoprop 85.3 43 0.00092 35.5 16.7 73 232-322 123-201 (268)
67 TIGR02090 LEU1_arch isopropylm 81.0 69 0.0015 35.7 16.9 137 162-322 39-196 (363)
68 PRK14040 oxaloacetate decarbox 80.0 11 0.00024 44.8 10.6 32 290-323 180-211 (593)
69 cd07944 DRE_TIM_HOA_like 4-hyd 79.9 27 0.00059 37.1 12.8 103 196-322 85-195 (266)
70 PLN02746 hydroxymethylglutaryl 79.5 64 0.0014 35.8 15.8 123 174-322 103-253 (347)
71 PF07745 Glyco_hydro_53: Glyco 78.8 85 0.0019 34.7 16.4 91 291-394 55-164 (332)
72 cd07945 DRE_TIM_CMS Leptospira 78.1 1E+02 0.0022 33.1 20.4 71 232-322 124-203 (280)
73 TIGR01108 oadA oxaloacetate de 77.2 34 0.00074 40.6 13.6 32 290-323 174-205 (582)
74 PRK14041 oxaloacetate decarbox 76.5 88 0.0019 36.2 16.3 30 291-322 179-208 (467)
75 TIGR02660 nifV_homocitr homoci 75.9 1E+02 0.0022 34.3 16.3 137 162-322 40-197 (365)
76 cd07947 DRE_TIM_Re_CS Clostrid 72.2 92 0.002 33.5 14.3 135 170-322 49-215 (279)
77 PF03851 UvdE: UV-endonuclease 72.1 82 0.0018 33.9 13.7 104 242-360 40-157 (275)
78 cd07948 DRE_TIM_HCS Saccharomy 71.2 1.5E+02 0.0032 31.6 15.9 136 168-335 19-178 (262)
79 PRK09389 (R)-citramalate synth 69.9 1.7E+02 0.0037 34.0 16.8 137 162-322 41-198 (488)
80 PRK14042 pyruvate carboxylase 69.0 51 0.0011 39.3 12.4 94 225-323 101-210 (596)
81 PRK05692 hydroxymethylglutaryl 68.4 1.5E+02 0.0031 32.1 14.8 124 174-322 61-211 (287)
82 PF01261 AP_endonuc_2: Xylose 67.9 47 0.001 32.5 10.4 103 293-414 26-138 (213)
83 cd04735 OYE_like_4_FMN Old yel 66.9 26 0.00057 38.8 9.1 46 261-322 214-259 (353)
84 PRK12331 oxaloacetate decarbox 66.8 1.4E+02 0.0031 34.3 15.1 30 291-322 180-209 (448)
85 cd07944 DRE_TIM_HOA_like 4-hyd 66.5 1.8E+02 0.004 30.9 16.0 142 168-336 17-176 (266)
86 PRK02308 uvsE putative UV dama 65.2 1.9E+02 0.0042 31.5 15.1 107 241-358 42-157 (303)
87 cd04734 OYE_like_3_FMN Old yel 64.9 53 0.0012 36.2 11.0 50 258-322 204-253 (343)
88 PRK13210 putative L-xylulose 5 64.9 1.8E+02 0.004 30.3 15.3 101 289-408 47-153 (284)
89 PRK13523 NADPH dehydrogenase N 60.7 35 0.00076 37.6 8.5 45 262-322 207-251 (337)
90 PRK12581 oxaloacetate decarbox 60.1 82 0.0018 36.5 11.5 31 290-322 188-218 (468)
91 PRK12677 xylose isomerase; Pro 57.0 1.7E+02 0.0036 33.0 13.2 100 296-409 69-180 (384)
92 PRK13209 L-xylulose 5-phosphat 56.8 2.6E+02 0.0056 29.3 15.7 102 288-409 51-159 (283)
93 TIGR00629 uvde UV damage endon 56.5 2.6E+02 0.0057 30.7 14.1 104 241-359 46-165 (312)
94 TIGR00542 hxl6Piso_put hexulos 56.4 2.6E+02 0.0057 29.3 16.3 101 289-408 47-153 (279)
95 PF00682 HMGL-like: HMGL-like 49.6 2.1E+02 0.0046 29.3 11.8 71 232-322 117-193 (237)
96 PRK06801 hypothetical protein; 49.4 3.7E+02 0.0081 29.1 15.3 131 223-410 7-137 (286)
97 KOG1924 RhoA GTPase effector D 49.2 23 0.0005 42.7 4.8 17 61-80 617-633 (1102)
98 KOG4127 Renal dipeptidase [Pos 49.0 84 0.0018 35.0 8.7 58 298-364 289-349 (419)
99 cd02803 OYE_like_FMN_family Ol 48.3 1.3E+02 0.0027 32.6 10.3 52 255-322 201-252 (327)
100 PRK09282 pyruvate carboxylase 48.1 1.6E+02 0.0034 35.3 11.7 32 290-323 179-210 (592)
101 PRK10558 alpha-dehydro-beta-de 47.7 34 0.00073 36.3 5.6 90 170-268 26-121 (256)
102 cd03174 DRE_TIM_metallolyase D 46.8 3.5E+02 0.0075 27.9 14.4 138 170-336 18-184 (265)
103 PRK09197 fructose-bisphosphate 46.6 4.6E+02 0.01 29.3 14.2 154 223-411 10-169 (350)
104 PRK00915 2-isopropylmalate syn 46.2 5.5E+02 0.012 30.1 17.3 143 162-322 43-208 (513)
105 COG1638 DctP TRAP-type C4-dica 44.7 1.7E+02 0.0036 32.4 10.5 116 87-211 57-208 (332)
106 TIGR03239 GarL 2-dehydro-3-deo 44.3 40 0.00086 35.6 5.4 90 170-268 19-114 (249)
107 TIGR03234 OH-pyruv-isom hydrox 43.5 2.4E+02 0.0052 29.1 11.2 91 296-409 41-144 (254)
108 cd07941 DRE_TIM_LeuA3 Desulfob 40.0 4.8E+02 0.01 27.7 16.8 31 290-322 176-207 (273)
109 cd02931 ER_like_FMN Enoate red 39.8 1E+02 0.0023 34.5 8.2 60 258-322 214-276 (382)
110 PRK07709 fructose-bisphosphate 39.8 5.2E+02 0.011 28.0 14.9 135 223-411 7-141 (285)
111 PRK12999 pyruvate carboxylase; 39.2 2.5E+02 0.0053 36.4 12.1 95 223-322 630-746 (1146)
112 TIGR02631 xylA_Arthro xylose i 38.3 5.5E+02 0.012 28.9 13.6 98 296-408 70-180 (382)
113 PRK12330 oxaloacetate decarbox 38.1 2.7E+02 0.0058 32.7 11.2 31 291-323 181-213 (499)
114 PRK08195 4-hyroxy-2-oxovalerat 37.7 6E+02 0.013 28.1 17.3 122 190-335 58-181 (337)
115 cd04723 HisA_HisF Phosphoribos 37.2 4.9E+02 0.011 26.9 12.9 54 173-231 66-121 (233)
116 PRK08185 hypothetical protein; 37.2 5.7E+02 0.012 27.7 14.0 128 224-410 3-131 (283)
117 COG3836 HpcH 2,4-dihydroxyhept 36.8 1.1E+02 0.0024 32.3 7.0 109 169-296 23-137 (255)
118 TIGR00973 leuA_bact 2-isopropy 35.9 7.7E+02 0.017 28.8 15.9 143 162-322 40-205 (494)
119 PF07279 DUF1442: Protein of u 35.9 1.2E+02 0.0026 31.5 7.2 62 194-258 27-91 (218)
120 PRK05692 hydroxymethylglutaryl 35.3 6E+02 0.013 27.4 16.3 141 168-335 23-192 (287)
121 cd04733 OYE_like_2_FMN Old yel 34.6 96 0.0021 34.0 6.8 55 252-322 206-260 (338)
122 TIGR03822 AblA_like_2 lysine-2 34.2 3.4E+02 0.0074 29.6 10.9 51 244-305 242-292 (321)
123 cd07943 DRE_TIM_HOA 4-hydroxy- 34.1 5.8E+02 0.012 26.8 16.8 89 222-335 87-178 (263)
124 smart00633 Glyco_10 Glycosyl h 33.5 84 0.0018 32.9 5.9 56 294-357 136-194 (254)
125 PRK10128 2-keto-3-deoxy-L-rham 33.5 82 0.0018 33.7 5.8 92 170-268 25-120 (267)
126 cd02933 OYE_like_FMN Old yello 32.5 2.8E+02 0.0061 30.6 10.0 50 258-321 215-264 (338)
127 TIGR01501 MthylAspMutase methy 32.0 2E+02 0.0043 27.6 7.5 53 298-362 43-95 (134)
128 PRK04165 acetyl-CoA decarbonyl 31.5 3.6E+02 0.0078 31.2 10.8 117 134-261 103-226 (450)
129 PRK09856 fructoselysine 3-epim 31.4 5.1E+02 0.011 26.9 11.4 97 293-409 46-150 (275)
130 COG1902 NemA NADH:flavin oxido 31.4 2.4E+02 0.0052 31.6 9.2 51 258-322 212-262 (363)
131 KOG1924 RhoA GTPase effector D 31.3 70 0.0015 38.8 5.1 9 222-230 714-722 (1102)
132 PRK12857 fructose-1,6-bisphosp 30.7 7.2E+02 0.016 26.9 14.8 132 223-411 7-138 (284)
133 PTZ00372 endonuclease 4-like p 30.7 3.7E+02 0.008 30.7 10.6 121 196-334 221-378 (413)
134 TIGR01520 FruBisAldo_II_A fruc 29.8 8.4E+02 0.018 27.4 14.3 149 225-411 18-176 (357)
135 PF12224 Amidoligase_2: Putati 29.6 2E+02 0.0043 29.8 7.9 54 293-346 91-148 (252)
136 COG0673 MviM Predicted dehydro 29.6 4.1E+02 0.0089 28.4 10.6 88 162-267 30-125 (342)
137 PRK04165 acetyl-CoA decarbonyl 29.5 9.4E+02 0.02 27.9 15.4 84 291-410 185-270 (450)
138 cd07937 DRE_TIM_PC_TC_5S Pyruv 29.4 7.1E+02 0.015 26.4 15.1 92 222-336 93-187 (275)
139 cd02932 OYE_YqiM_FMN Old yello 29.2 1.6E+02 0.0036 32.1 7.5 51 255-321 214-264 (336)
140 PF03162 Y_phosphatase2: Tyros 29.1 2.8E+02 0.0061 27.3 8.3 90 215-322 14-103 (164)
141 PRK12738 kbaY tagatose-bisphos 29.1 7.7E+02 0.017 26.7 15.0 132 223-411 7-138 (286)
142 KOG2875 8-oxoguanine DNA glyco 29.0 44 0.00096 35.9 2.8 80 285-392 98-178 (323)
143 cd00019 AP2Ec AP endonuclease 28.6 7E+02 0.015 26.1 17.5 96 292-408 43-143 (279)
144 PRK08091 ribulose-phosphate 3- 28.3 7.1E+02 0.015 26.1 12.1 105 223-359 81-188 (228)
145 cd07940 DRE_TIM_IPMS 2-isoprop 28.0 7.3E+02 0.016 26.1 14.1 142 168-336 17-181 (268)
146 TIGR01319 glmL_fam conserved h 27.8 3.1E+02 0.0067 31.8 9.4 59 196-258 110-172 (463)
147 PRK07188 nicotinate phosphorib 27.8 4.9E+02 0.011 29.1 10.8 105 238-359 204-313 (352)
148 PF04273 DUF442: Putative phos 27.8 1.6E+02 0.0034 27.2 5.9 84 213-321 8-97 (110)
149 PF01116 F_bP_aldolase: Fructo 27.4 4.1E+02 0.0089 28.7 9.9 132 223-411 6-137 (287)
150 cd02006 TPP_Gcl Thiamine pyrop 27.2 2.1E+02 0.0046 28.7 7.4 74 194-270 89-194 (202)
151 PRK09195 gatY tagatose-bisphos 27.1 8.3E+02 0.018 26.4 14.5 132 223-411 7-138 (284)
152 PRK01060 endonuclease IV; Prov 26.9 7.4E+02 0.016 25.8 15.9 98 291-408 44-146 (281)
153 COG1311 HYS2 Archaeal DNA poly 26.7 1.4E+02 0.0031 34.4 6.5 86 312-411 229-318 (481)
154 COG3867 Arabinogalactan endo-1 26.5 9E+02 0.02 26.7 15.5 93 287-393 94-209 (403)
155 PRK13587 1-(5-phosphoribosyl)- 26.5 7.4E+02 0.016 25.7 12.1 18 214-231 79-96 (234)
156 KOG2035 Replication factor C, 26.0 1.6E+02 0.0034 32.1 6.2 109 85-205 86-197 (351)
157 PF13679 Methyltransf_32: Meth 25.7 89 0.0019 29.6 4.0 29 332-360 5-37 (141)
158 TIGR02311 HpaI 2,4-dihydroxyhe 25.1 1.8E+02 0.0038 30.7 6.5 92 170-268 19-114 (249)
159 PF00331 Glyco_hydro_10: Glyco 25.1 1.3E+02 0.0029 32.8 5.8 56 293-357 187-245 (320)
160 cd06564 GH20_DspB_LnbB-like Gl 24.9 3.6E+02 0.0079 29.4 9.2 112 218-349 76-195 (326)
161 TIGR03217 4OH_2_O_val_ald 4-hy 24.6 9.7E+02 0.021 26.4 17.0 122 190-335 57-180 (333)
162 PRK05835 fructose-bisphosphate 24.3 9.7E+02 0.021 26.3 14.6 132 223-411 6-138 (307)
163 cd01320 ADA Adenosine deaminas 24.3 9E+02 0.019 25.9 13.8 25 292-321 171-195 (325)
164 COG3623 SgaU Putative L-xylulo 24.0 6.6E+02 0.014 26.7 10.0 88 290-391 50-142 (287)
165 PF03102 NeuB: NeuB family; I 23.9 4.1E+02 0.0089 28.0 8.9 77 214-318 71-149 (241)
166 TIGR01244 conserved hypothetic 23.3 6.3E+02 0.014 23.8 10.1 83 215-321 9-97 (135)
167 COG1725 Predicted transcriptio 23.3 2E+02 0.0043 27.4 5.7 63 286-348 42-107 (125)
168 cd02072 Glm_B12_BD B12 binding 23.2 3.5E+02 0.0077 25.7 7.5 53 298-362 41-93 (128)
169 PF01408 GFO_IDH_MocA: Oxidore 22.8 2.4E+02 0.0053 25.1 6.2 81 170-266 32-119 (120)
170 PF03664 Glyco_hydro_62: Glyco 22.5 1.7E+02 0.0038 31.0 5.6 33 561-596 171-205 (271)
171 cd02003 TPP_IolD Thiamine pyro 21.9 5.6E+02 0.012 25.8 9.3 40 232-272 147-186 (205)
172 TIGR02635 RhaI_grampos L-rhamn 21.8 1.1E+03 0.024 26.6 12.3 98 296-408 71-177 (378)
173 COG1509 KamA Lysine 2,3-aminom 21.5 6.2E+02 0.013 28.5 9.8 164 174-360 157-333 (369)
174 PF13941 MutL: MutL protein 21.4 8.3E+02 0.018 28.3 11.3 136 196-358 114-258 (457)
175 TIGR01858 tag_bisphos_ald clas 20.6 1.1E+03 0.024 25.5 14.3 132 223-411 5-136 (282)
176 PRK13587 1-(5-phosphoribosyl)- 20.5 9.7E+02 0.021 24.9 11.3 67 172-244 63-131 (234)
177 cd02015 TPP_AHAS Thiamine pyro 20.3 5.2E+02 0.011 25.4 8.5 74 194-270 82-174 (186)
178 PF02126 PTE: Phosphotriestera 20.0 3.7E+02 0.008 29.4 7.9 66 174-246 141-215 (308)
No 1
>COG1166 SpeA Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-137 Score=1116.74 Aligned_cols=575 Identities=43% Similarity=0.738 Sum_probs=523.6
Q ss_pred CCCCCHHhhhhhhcCCCCCCCCceeCCCccEEEecCCCCcCCcCCcCHHHHHHHhCCCCCCCCCCCCCcEEEEcHHHHHH
Q 005135 61 SSHWSPSHSASLYKIDSWGAPYFAVNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPKSVGGLGLQLPLIVRLPDVLRD 140 (712)
Q Consensus 61 ~~~w~~~~~~~ly~i~~wg~~yf~i~~~G~l~v~p~~~~~l~~~~i~l~el~~~~~~~~~~~~~g~~tPl~V~d~d~L~~ 140 (712)
.+.|++++++++|+|++||.|||.||+.|+|+|+|.++ +...+||.+|+++++++ |++.|++++|+++|.+
T Consensus 22 ~~~~~~~~~~~~Y~I~~Wg~~yF~In~~G~v~V~P~~~---~~~~~dL~elV~~l~~~------g~~LPlL~rFp~IL~~ 92 (652)
T COG1166 22 MSSWTIDDSRELYNINHWGNGYFDINDAGHVTVCPDPD---PGARVDLAELVKALRDR------GLRLPLLLRFPQILQH 92 (652)
T ss_pred cccccHHHHHHhcCcccccCcceeecCCccEEEecCCC---ccccccHHHHHHHHHhc------CCCCceEEechHHHHH
Confidence 34599999999999999999999999999999999876 36789999999999999 8999999999999999
Q ss_pred HHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHhcCCCCCCcEEEeCCC
Q 005135 141 RLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGF 220 (712)
Q Consensus 141 ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng~ 220 (712)
|+++|+.||.+|+++++|.+.|+.+|||||||++.|++.|++.|.++++|+|++||+||++||+.. ..|..+|+||||
T Consensus 93 Rl~~ln~aF~~Ai~ey~Y~g~Y~~VyPIKvNQ~r~vVe~Lv~~g~~~~~GLEAGSK~ELm~vLA~~--~~~~~~IvCNGy 170 (652)
T COG1166 93 RLRSLNAAFARAIEEYGYPGGYFAVYPIKVNQHRRVVESLVASGKGYPLGLEAGSKAELMAVLAHA--GNPGSLIVCNGY 170 (652)
T ss_pred HHHHHHHHHHHHHHHhCCCCceeEEEEeeecchHHHHHHHHhccCCCCCcccCCCHHHHHHHHHhc--CCCCCeEEecCc
Confidence 999999999999999999999999999999999999999999998888999999999999999986 367889999999
Q ss_pred CCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHH
Q 005135 221 KDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVV 300 (712)
Q Consensus 221 K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l 300 (712)
||+|+|++|+.++++|++++||||.++||+.+++.|+++|++|++|||+++.+.++|+|+++||++||||+++.|+++++
T Consensus 171 KDrEyI~lAlig~kLGh~v~ivIEklsEl~~VleeA~~lgvkP~lGvR~RL~sqGsGkW~~SgG~ksKFGLsa~qvL~~v 250 (652)
T COG1166 171 KDREYIRLALIGEKLGHKVYIVIEKLSELDLVLEEAKQLGVKPRLGVRARLASQGSGKWQSSGGEKSKFGLSATQVLQVV 250 (652)
T ss_pred ccHHHHHHHHHHHHhCCceEEEEechHHHHHHHHHHHHcCCCCcceeEEEEecccccccccccCchhccCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCCCCCCCCCCcCCCHH
Q 005135 301 KKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLE 380 (712)
Q Consensus 301 ~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s~~~~~~~s~~ysle 380 (712)
++|++.++|+||+.||||+||||.|+++++.+++|+.++|.+|+++|++++++|+||||||+|+|+++. +++|+||+++
T Consensus 251 ~~Lre~~~Ld~l~llHFHlGSQisnI~~ik~~~rEA~r~YvEL~klGa~i~~~dVGGGLgVDYdGt~t~-~~~S~NY~l~ 329 (652)
T COG1166 251 ERLREANLLDSLQLLHFHLGSQISNIRDIKTGVREAARFYVELRKLGANIKYFDVGGGLGVDYDGTRTQ-SDCSKNYGLN 329 (652)
T ss_pred HHHHhcchHHhhHHHhhhhcchhhhhHHHHHHHHHHHHHHHHHHHcCCCceEEeccCceeecccCcccc-ccccccCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999986 5899999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEecCcchhccccceEEEEEEEEEecCC-CCCCCCc-chhhHhhhc-------hh-h
Q 005135 381 EYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEAVSASVSRA-APVAMSP-LGLQYLVEG-------LT-E 450 (712)
Q Consensus 381 eya~~Iv~~l~~~~~~~gv~~p~Li~EPGRalvA~agvLVt~Vi~vk~~~~-~~~~~~~-~~~~~lvdg-------~~-~ 450 (712)
|||++|+.+++++|+++++|+|+|++|+||+|+|||+|||++|+++.+... ..+...+ ....-+++. ++ .
T Consensus 330 eYA~dVV~~l~d~C~~~~~p~P~IisESGRaitAHhaVLI~~Vi~v~~~~~~~~p~~~~~~~~~~l~~~~~e~~~~i~~r 409 (652)
T COG1166 330 EYANDVVWALKDACEEKGLPHPTIISESGRAITAHHAVLIANVIGVERHEYNDAPLPDAPRNLPPLWRTLQELYESITAR 409 (652)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEeecchhhhhcceEEEeeecccccCCCCCCCCCCCcccchHHHHHHHHHhcccCHH
Confidence 999999999999999999999999999999999999999999999987653 1222211 111123321 22 1
Q ss_pred hHHHHH-------HHHHHHHHhh------------------hhc--------cCC---------CCcccccccccccccc
Q 005135 451 DARSDY-------TKMTTAALRA------------------MEI--------GAS---------DPVRTYHVNLSIFTSI 488 (712)
Q Consensus 451 ~~~~~y-------~~~~~~~~~g------------------~~~--------~~~---------~~~~~Y~~N~Svf~Sl 488 (712)
+++|.| ++++..|..| +++ ..+ .++++||+|||+|||+
T Consensus 410 ~~~E~~hds~~~~~~~~~~f~~G~l~L~~Ra~aEqL~~aic~ki~~~~~~~~~~~r~~ldeLqe~ladky~vNfSlFQSl 489 (652)
T COG1166 410 NLREWYHDSQDDLEDAHSLFNLGYLSLQERAWAEQLYLAICHKVQQLLRQKNRSHRPILDELQERLADKYYVNFSLFQSL 489 (652)
T ss_pred HHHHHHHHhHhHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHhhhhccCChHHHHHHHHHHhhhhEEeehhhccC
Confidence 445666 3345555555 111 112 1578899999999999
Q ss_pred chhhhcCCcceeeecCCCCCCCCeeeEeecccccCCCccccccCCC---cccCCccccCCCCCCCcccEEEeecccchhc
Q 005135 489 PDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGG---TSLPLHEMVGGGCGERGPYYLGMFLGGAYEE 565 (712)
Q Consensus 489 pD~w~i~q~fPI~pl~rl~e~p~~~~~l~G~TCdS~D~I~~fi~~~---~~LPl~~l~~G~~~~~~~d~L~~~~~GAYq~ 565 (712)
||.|+|+|+|||+||+|++|+|+++++|+|+||||||+|++|++.. .+||+|+.++ +++|+||||++||||+
T Consensus 490 PD~W~IdQlFPI~Pl~rLdE~PtRravL~DiTCDSDG~Id~yid~~~i~s~Lplh~~~~-----~epy~lGfFLVGAYQE 564 (652)
T COG1166 490 PDAWGIDQLFPILPLHRLDEEPTRRAVLLDITCDSDGKIDHYIDGDGIKSTLPLHEYDP-----GEPYLLGFFLVGAYQE 564 (652)
T ss_pred cchhccccccccccccccCCCccceeEEEeeeeCCCCcceeeecCccccccccCCCCCC-----CCCceeeeehHhHHHH
Confidence 9999999999999999999999999999999999999999999864 7999999999 5999999999999999
Q ss_pred cccCCCCCCCCCcEEEEEecCCCCeEEEEEcCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHhccCCCCCCCCCCCCccc
Q 005135 566 ALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYCGQEHGSNGGDGDTDDYD 645 (712)
Q Consensus 566 ~m~s~fNlf~~p~~V~V~~~d~~g~~~i~r~~~g~t~~dvl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (712)
+||++||||++|++|+|. .+.+|+|+|...++|+|++|||+||+|+|++|++.||++++++... .+
T Consensus 565 ILG~~HNLFGdt~~v~V~-v~~~G~y~ie~~~egdTi~dmL~yv~yd~~~l~~~~r~~i~~a~l~------------~e- 630 (652)
T COG1166 565 ILGNMHNLFGDTTAVHVV-VDPKGSYEIEDIVEGDTVADMLEYVQYDPKELLTLYRQQIEAADLT------------AE- 630 (652)
T ss_pred HHhhhhhccCCCceEEEE-ECCCCcEEEEeeeccccHHHHHHHhccCHHHHHHHHHHHHHhcCCC------------HH-
Confidence 999999999999999998 4667889999999999999999999999999999999999998322 12
Q ss_pred cccccHHHHHHHHHHhccCCCcccC
Q 005135 646 HGMANNSALASSLAQYFHSMPYLVV 670 (712)
Q Consensus 646 ~~~~~~~~~~~~~~~~l~~~tyl~~ 670 (712)
|+ ++++++|+.+|.+||||++
T Consensus 631 ---e~-~~~L~~le~~L~~ytYL~~ 651 (652)
T COG1166 631 ---EQ-KQLLEELEAGLNGYTYLED 651 (652)
T ss_pred ---HH-HHHHHHHHHhhccCccccC
Confidence 34 8999999999999999986
No 2
>PRK05354 arginine decarboxylase; Provisional
Probab=100.00 E-value=3.7e-128 Score=1105.50 Aligned_cols=576 Identities=45% Similarity=0.798 Sum_probs=517.4
Q ss_pred CCCCCHHhhhhhhcCCCCCCCCceeCCCccEEEecCCCCcCCcCCcCHHHHHHHhCCCCCCCCCCCCCcEEEEcHHHHHH
Q 005135 61 SSHWSPSHSASLYKIDSWGAPYFAVNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPKSVGGLGLQLPLIVRLPDVLRD 140 (712)
Q Consensus 61 ~~~w~~~~~~~ly~i~~wg~~yf~i~~~G~l~v~p~~~~~l~~~~i~l~el~~~~~~~~~~~~~g~~tPl~V~d~d~L~~ 140 (712)
.+.||+++|++||+|++||+|||+||++|+|+|+|.+. +..+++|.+|+++++++ +++||+||||+++|++
T Consensus 6 ~~~w~~~~~~~~y~i~~Wg~~yf~i~~~G~~~v~p~~~---~~~~i~L~~l~~~~~~~------~~gtPlyV~~~~~L~~ 76 (634)
T PRK05354 6 MSDWSIEDSRELYNIDHWGAGYFDINDKGHVSVRPDGD---PGASIDLAELVKELRER------GLRLPLLLRFPDILQD 76 (634)
T ss_pred cccCCHHHHHHhcCCCccCCCcccCCCCCCEEEecCCC---CCCCcCHHHHHHHhhcc------CCCCCEEEEcHHHHHH
Confidence 44799999999999999999999999999999999864 46799999999999999 8999999999999999
Q ss_pred HHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHhcCCCCCCcEEEeCCC
Q 005135 141 RLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGF 220 (712)
Q Consensus 141 ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng~ 220 (712)
|+++|+++|++++++++|+++++++||+|||+++.||+.+.+.|..|++|+||+|++||.+|+++|+ +|+++|+|||+
T Consensus 77 ri~~L~~aF~~a~~~~~y~g~~~~~YAiKaN~~~~Vl~~l~~~G~~~~~GlEv~S~~EL~~AL~~g~--~~~~lIi~NG~ 154 (634)
T PRK05354 77 RVRSLNAAFKKAIEEYGYQGDYRGVYPIKVNQQRRVVEEIVASGKPYNLGLEAGSKPELMAVLALAG--DPGALIVCNGY 154 (634)
T ss_pred HHHHHHHHHHHHHHhhccCCCceEEEEeccCChHHHHHHHHHcCCCCceeEEECCHHHHHHHHHcCC--CCCcEEEcCCC
Confidence 9999999999999999999999999999999999999999999988889999999999999999995 77888999999
Q ss_pred CCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHH
Q 005135 221 KDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVV 300 (712)
Q Consensus 221 K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l 300 (712)
|++++|++|+.+.++|++++|||||++||++|.+++++++++++|||||||...++|+|..|+|..||||++.+|+.+++
T Consensus 155 Kd~e~I~~Al~~~~lG~~v~ivIDs~~EL~~I~~~a~~~~~~p~IglRi~~~~~~~g~~~~tgG~~SKFGl~~~ei~~~i 234 (634)
T PRK05354 155 KDREYIRLALIGRKLGHKVFIVIEKLSELELILEEAKELGVKPRLGVRARLASQGSGKWQSSGGEKSKFGLSATEVLEAV 234 (634)
T ss_pred CCHHHHHHHHHhHhcCCCEEEEECCHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCcccCCCCCCCCCCCHHHHHHHH
Confidence 99999999998888899999999999999999999999999999999999998888999999999999999999999999
Q ss_pred HHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCCCCCCCCCCcCCCHH
Q 005135 301 KKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLE 380 (712)
Q Consensus 301 ~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s~~~~~~~s~~ysle 380 (712)
+++++.+++++|+|||||+|||+.+++.|+++++++++++.+++++|+++++|||||||||+|+++++. .++|+||+++
T Consensus 235 ~~lk~~~~l~~L~GLHfHiGSQi~d~~~~~~al~e~~~~~~eL~~~G~~l~~LDIGGGlgV~Y~g~~~~-~~~s~nydl~ 313 (634)
T PRK05354 235 ERLREAGLLDCLQLLHFHLGSQIANIRDIKTAVREAARFYVELRKLGAPIQYLDVGGGLGVDYDGTRSQ-SDSSVNYSLQ 313 (634)
T ss_pred HHHHhCCCCCceEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEeCCCcCcCCCCCccc-ccccCCCCHH
Confidence 999999988779999999999999999999999999999999999999999999999999999988764 3678999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEecCcchhccccceEEEEEEEEEecCCCCCC-C---CcchhhHhh---hchh-hhH
Q 005135 381 EYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEAVSASVSRAAPVA-M---SPLGLQYLV---EGLT-EDA 452 (712)
Q Consensus 381 eya~~Iv~~l~~~~~~~gv~~p~Li~EPGRalvA~agvLVt~Vi~vk~~~~~~~~-~---~~~~~~~lv---dg~~-~~~ 452 (712)
+|++.|+..++++|++.++++|+|++|||||+||+||+||++|+++|......+. . .+...+.++ +.++ .++
T Consensus 314 eya~~Iv~~l~~~~~~~~v~~p~Ii~EpGRalVA~agvLvt~V~~vK~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 393 (634)
T PRK05354 314 EYANDVVYTLKEICEEHGVPHPTIISESGRALTAHHAVLVFNVLGVESQEYEEPPAPAEDAPPLLQNLWETYQEISERNL 393 (634)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEECCCchhhhcceEEEEEEEEEEecCCCCCCCCcccccHHHHHHHHHHHHhchhhH
Confidence 9999999999999999999999999999999999999999999999987543222 1 111122222 1222 234
Q ss_pred HHHH-------HHHHHHHHhh------------------hhc-----cC---C--------CCccccccccccccccchh
Q 005135 453 RSDY-------TKMTTAALRA------------------MEI-----GA---S--------DPVRTYHVNLSIFTSIPDY 491 (712)
Q Consensus 453 ~~~y-------~~~~~~~~~g------------------~~~-----~~---~--------~~~~~Y~~N~Svf~SlpD~ 491 (712)
.|+| +++...|.+| +++ +. + .++++||||||+||||||+
T Consensus 394 ~e~~~da~~~~~~~~~~f~~g~~~l~~ra~~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~y~~NfS~FqslPD~ 473 (634)
T PRK05354 394 QEIYHDAQQDLEEALTLFALGYLSLQERAWAEQLYWAICRKIQKLLDPKNRHPPELDELQERLADKYYVNFSLFQSLPDA 473 (634)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHhhhheEEeeehhccccch
Confidence 5666 3455566666 111 11 0 1567999999999999999
Q ss_pred hhcCCcceeeecCCCCCCCCeeeEeecccccCCCccccccCCC---cccCCccccCCCCCCCcccEEEeecccchhcccc
Q 005135 492 WAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGG---TSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALG 568 (712)
Q Consensus 492 w~i~q~fPI~pl~rl~e~p~~~~~l~G~TCdS~D~I~~fi~~~---~~LPl~~l~~G~~~~~~~d~L~~~~~GAYq~~m~ 568 (712)
|+|+|+||||||||++|+|+++++|+|+||||||+|++|++.+ .+||||++++ +|+||||||+|||||++||
T Consensus 474 Wai~Q~Fpi~Pi~rl~e~p~~~~~l~DiTCDSDg~i~~fi~~~~~~~~l~lh~~~~-----~e~y~lg~FlvGAYQe~lg 548 (634)
T PRK05354 474 WAIDQLFPIMPLHRLDEEPTRRAVLADITCDSDGKIDQFIDGQGIKTTLPLHELDP-----GEPYYLGFFLVGAYQEILG 548 (634)
T ss_pred hhhCCccceeeccccCCCcceeeEEecccccCCCchhcccCCcCCcCceeCCccCC-----CCccEEEEEecchhhHhhc
Confidence 9999999999999999999999999999999999999999864 7999999987 5899999999999999999
Q ss_pred CCCCCCCCCcEEEEEecCCCCeEEEEEcCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccc
Q 005135 569 GVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYCGQEHGSNGGDGDTDDYDHGM 648 (712)
Q Consensus 569 s~fNlf~~p~~V~V~~~d~~g~~~i~r~~~g~t~~dvl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (712)
++|||||+|++|+|. .+++|+|.+.+.++|+|++|||++|+|+|+.|.++||+++.+. |+| ++.
T Consensus 549 ~~HNLfg~~~~v~v~-~~~~g~~~i~~~~~g~~~~~vL~~v~y~~~~l~~~~~~~~~~~----~~~------~~~----- 612 (634)
T PRK05354 549 DMHNLFGDTNAVHVR-VDEDGGYEIEHVIEGDTVADVLEYVQYDPKELLERLREKAVKE----GKL------SPE----- 612 (634)
T ss_pred cccccCCCCCEEEEE-ECCCCCEEEEEecCCCCHHHHHHHcCCCHHHHHHHHHHHHHhc----CCC------CHH-----
Confidence 999999999999999 4666789999999999999999999999999999999765443 455 232
Q ss_pred ccHHHHHHHHHHhccCCCcccC
Q 005135 649 ANNSALASSLAQYFHSMPYLVV 670 (712)
Q Consensus 649 ~~~~~~~~~~~~~l~~~tyl~~ 670 (712)
|+ +++++.|+++|+|||||+.
T Consensus 613 e~-~~~~~~~~~~l~~ytYl~~ 633 (634)
T PRK05354 613 ER-QQLLEELEAGLRGYTYLED 633 (634)
T ss_pred HH-HHHHHHHHHHccCCCCcCC
Confidence 34 8999999999999999985
No 3
>TIGR01273 speA arginine decarboxylase, biosynthetic. A distinct biodegradative form is also pyridoxal phosphate-dependent but is not similar in sequence.
Probab=100.00 E-value=3.4e-127 Score=1097.21 Aligned_cols=572 Identities=48% Similarity=0.811 Sum_probs=512.5
Q ss_pred CCHHhhhhhhcCCCCCCCCceeCCCccEEEecCCCCcCCcCCcCHHHHHHHhCCCCCCCCCCCCCcEEEEcHHHHHHHHH
Q 005135 64 WSPSHSASLYKIDSWGAPYFAVNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPKSVGGLGLQLPLIVRLPDVLRDRLE 143 (712)
Q Consensus 64 w~~~~~~~ly~i~~wg~~yf~i~~~G~l~v~p~~~~~l~~~~i~l~el~~~~~~~~~~~~~g~~tPl~V~d~d~L~~ni~ 143 (712)
||+++|++||+|++||+|||+||++|||+|+|.+.. +..+|||.+|+++++++ |++||+||||+++|++|++
T Consensus 1 w~~~~~~~ly~i~~Wg~~yf~i~~~G~~~v~p~~~~--~~~~i~l~~~v~~~~~~------g~~tPl~V~d~~iL~~~i~ 72 (624)
T TIGR01273 1 WSASESRKDYNIKGWGAGYFAINKDGNVCVRPGGRD--TLQSIDLLELVDQVRAR------GLQLPLLVRFPDILQHRIR 72 (624)
T ss_pred CChhHHHHHcCCCCcCCccccCCCCeeEEEeeCCCC--CCCCcCHHHHHHHHHhc------CCCCCEEEEcHHHHHHHHH
Confidence 999999999999999999999999999999997641 24789999999999999 8999999999999999999
Q ss_pred HHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHhcCCCCCCcEEEeCCCCCH
Q 005135 144 SLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDA 223 (712)
Q Consensus 144 ~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng~K~~ 223 (712)
+|+++|++++++++|+++++++||+|||+++.|++.|.+.|..|++|+||+|++||.+|+++|+ .|+..|+|||+|++
T Consensus 73 ~l~~aF~~a~~~~~Y~g~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEv~S~~EL~~Al~~g~--~p~~~Ii~NG~K~~ 150 (624)
T TIGR01273 73 SLNDAFANAIEEYQYAGHYQGVYPIKVNQHRSVVEDIVAFGKGLNYGLEAGSKPELLAAMAYAT--KPGAPIVCNGYKDR 150 (624)
T ss_pred HHHHHHHHHHHhhccCCCeeEEEEeccCCcHHHHHHHHHcCCCCceEEEECCHHHHHHHHHcCC--CCCCEEEeCCCCCH
Confidence 9999999999999999999999999999999999999999988889999999999999999995 56778899999999
Q ss_pred HHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHH
Q 005135 224 GYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKL 303 (712)
Q Consensus 224 e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l 303 (712)
++|++|+.+.++|++++|||||++||++|.+++++++++++|||||||...++++|..||+..||||++.+|+.++++++
T Consensus 151 e~I~~Al~~~~lG~~v~IvIDs~~EL~~I~~~a~~~~~~~~IglRvnl~~~~~g~~~~tgg~~SKFGl~~~ei~~~i~~l 230 (624)
T TIGR01273 151 EYIELALIGRKLGHNVFIVIEKLSELDLVIEEAKKLGVKPKLGLRARLASKGSGKWASSGGEKSKFGLSATQILEVVRLL 230 (624)
T ss_pred HHHHHHHHhhhcCCCeEEEECCHHHHHHHHHHHHhcCCCceEEEEEecCCCCCCCcccCCCCCCCCCCCHHHHHHHHHHH
Confidence 99999999888999999999999999999999999999999999999998888999999999999999999999999999
Q ss_pred HHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCCCCCCCCCCcCCCHHHHH
Q 005135 304 EVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEEYA 383 (712)
Q Consensus 304 ~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s~~~~~~~s~~ysleeya 383 (712)
++.+++++++|||||+|||+.+++.++++++++.+++.+++++|+++++|||||||||+|+++++. .++|++|++++||
T Consensus 231 k~~~~l~~L~GLHfHiGSQi~d~~~~~~ai~~~~~i~~eL~~~G~~l~~LDIGGGlgV~Y~g~~~~-~~~s~~y~leeya 309 (624)
T TIGR01273 231 EQNGLLDCLKLLHFHIGSQISNIDDVKKGVREAARFYCELRKLGAKITYVDVGGGLGVDYDGTSSS-SDCSVNYGLEEYA 309 (624)
T ss_pred HhcCCCCceEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEeCCCcCCCCCCcccc-cccCCCCCHHHHH
Confidence 999988789999999999999999999999999999999999999999999999999999987653 3578899999999
Q ss_pred HHHHHHHHHHHHhcCCCCCeEEecCcchhccccceEEEEEEEEEecCCC-CCCC---CcchhhHhhh---ch-hhhHHHH
Q 005135 384 SAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEAVSASVSRAA-PVAM---SPLGLQYLVE---GL-TEDARSD 455 (712)
Q Consensus 384 ~~Iv~~l~~~~~~~gv~~p~Li~EPGRalvA~agvLVt~Vi~vk~~~~~-~~~~---~~~~~~~lvd---g~-~~~~~~~ 455 (712)
+.|+.+++++|++.++++|+|++||||||||+|++|||+|+++|..... .+.. .+...+.+++ .+ ..+++|+
T Consensus 310 ~~Iv~~l~~~~~~~~~~~p~Ii~EpGR~lvA~agvLVt~V~~vK~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~ 389 (624)
T TIGR01273 310 ADVVQALREICDEKGVPHPVIITESGRAITAHHAVLITNVLGVERHEYDPDPKIKEDTPPLVRTLRELYGSIDRRSAIEI 389 (624)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEcCCCchhccceEEEEEEEEEeccCCCCCCCCcccccHHHHHHHHHHHHhccccHHHH
Confidence 9999999999999999999999999999999999999999999985532 1111 1111222222 11 1234566
Q ss_pred HH-------HHHHHHHhh------------------hhc-----c-----------CCCCccccccccccccccchhhhc
Q 005135 456 YT-------KMTTAALRA------------------MEI-----G-----------ASDPVRTYHVNLSIFTSIPDYWAI 494 (712)
Q Consensus 456 y~-------~~~~~~~~g------------------~~~-----~-----------~~~~~~~Y~~N~Svf~SlpD~w~i 494 (712)
|+ ++...|.+| +++ . -..++++||||||+||||||+|+|
T Consensus 390 ~~da~~~~~~~~~~f~~G~l~l~~ra~~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~y~~NfS~fqslPD~Wai 469 (624)
T TIGR01273 390 LHDAQHLKEEAVEGFKLGYLDLEQRAWAEQLYLSICRKVHQLSAKNKDHRPILDELQERLADKYFVNFSVFQSLPDAWGI 469 (624)
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHhhhhheEEehhhhccccchhhh
Confidence 63 344555555 111 0 012577999999999999999999
Q ss_pred CCcceeeecCCCCCCCCeeeEeecccccCCCccccccCCC---cccCCccccCCCCCCCcccEEEeecccchhccccCCC
Q 005135 495 GQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGG---TSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVH 571 (712)
Q Consensus 495 ~q~fPI~pl~rl~e~p~~~~~l~G~TCdS~D~I~~fi~~~---~~LPl~~l~~G~~~~~~~d~L~~~~~GAYq~~m~s~f 571 (712)
+|+||||||||++|+|+++++|+|+||||||+|++|++.. .+||||++++ +++||||||++||||++||+.|
T Consensus 470 ~Q~Fpi~Pl~rl~e~p~~~~~l~DiTCDSDg~i~~fi~~~~~~~~l~lh~~~~-----~e~y~lg~FlvGAYQe~lg~~H 544 (624)
T TIGR01273 470 DQLFPIMPLSRLDEKPTRRAVLQDITCDSDGKIDQFIGEQGITSTLPLHELDP-----DEGYFLGFFLVGAYQEILGDMH 544 (624)
T ss_pred CCccceecCCCCCCCccceEEEeccCCCCCCchhccCCCcCccCCccCCCcCC-----CCCcEEEEEeccHhHHHhcccc
Confidence 9999999999999999999999999999999999999853 7899999988 5889999999999999999999
Q ss_pred CCCCCCcEEEEEecCCCCeEEEEEcCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHhccCCCCCCCCCCCCccccccccH
Q 005135 572 NLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYCGQEHGSNGGDGDTDDYDHGMANN 651 (712)
Q Consensus 572 Nlf~~p~~V~V~~~d~~g~~~i~r~~~g~t~~dvl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (712)
||||+|++|+|.. +++|+|.+.+.++|+|++|||++|+|+|++|.+++|++++++... + + |+
T Consensus 545 NLfg~~~~v~v~~-~~~g~~~~~~~~~g~~~~~vL~~v~y~~~~l~~~~~~~~~~~~~~-----------~-~----e~- 606 (624)
T TIGR01273 545 NLFGDTSAVRVVF-DGDGGYEVEDIREGDTTEDMLRYVQYDPKEILTLYRQKVANNKLD-----------A-E----EK- 606 (624)
T ss_pred ccCCCCCEEEEEE-CCCCCEEEEEecCCCCHHHHHHHcCCCHHHHHHHHHHHHHhcCCC-----------H-H----HH-
Confidence 9999999999994 556789999999999999999999999999999999999987221 2 2 34
Q ss_pred HHHHHHHHHhccCCCccc
Q 005135 652 SALASSLAQYFHSMPYLV 669 (712)
Q Consensus 652 ~~~~~~~~~~l~~~tyl~ 669 (712)
+++++.|+++|+|||||+
T Consensus 607 ~~~~~~~~~~l~~ytYl~ 624 (624)
T TIGR01273 607 KQVLELLERGLSGYPYLS 624 (624)
T ss_pred HHHHHHHHHHccCCCCCC
Confidence 899999999999999996
No 4
>PLN02439 arginine decarboxylase
Probab=100.00 E-value=1.2e-111 Score=958.48 Aligned_cols=520 Identities=74% Similarity=1.170 Sum_probs=459.5
Q ss_pred EEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHhcCCC
Q 005135 130 LIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKG 209 (712)
Q Consensus 130 l~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~G~~~ 209 (712)
++|||+++|++|+++|+++|++++++++|+++++++||+|||+++.||+.+.+.|..|++|+||+|++||.+|+++|+++
T Consensus 1 ~l~rf~d~l~~ri~~L~~aF~~ai~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEa~S~~EL~~al~~~~~~ 80 (559)
T PLN02439 1 LIVRFPDVLKNRLESLQSAFDYAIQSQGYNSHYQGVFPVKCNQDRFLVEDIVKFGSPFRFGLEAGSKPELLLAMSCLCKG 80 (559)
T ss_pred CEeeCHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEeecCCCHHHHHHHHHcCCccCceeEEeCHHHHHHHHHcCCCC
Confidence 47999999999999999999999999999999999999999999999999999998888999999999999999997544
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCC
Q 005135 210 SPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKF 289 (712)
Q Consensus 210 ~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKF 289 (712)
+|+++|+|||+|++++|++|+.++++|++++|||||++||++|.++++++++++.|||||||.+.++++|..+++..+||
T Consensus 81 ~~~~ii~~NG~Kd~e~i~~Al~~~~lG~~~~IviDs~~EL~~I~~~a~~l~~~p~IglRi~~~~~~~~~~~~tgg~~sKF 160 (559)
T PLN02439 81 SPDAFLICNGYKDAEYVSLALLARKLGLNTVIVLEQEEELDLVIEASQRLGVRPVIGVRAKLRTKHSGHFGSTSGEKGKF 160 (559)
T ss_pred CCCeEEECCCCCCHHHHHHHHHhhhCCCCeEEEECCHHHHHHHHHHHHHcCCCceEEEEEecCCCCCCCccccCCCCCCC
Confidence 57899999999999999999998889999889999999999999999999999999999999998889999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCCCCC
Q 005135 290 GLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSA 369 (712)
Q Consensus 290 Gl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s~~~ 369 (712)
|++.+|+.++++++++.++++|++|||||+||||.+++.|+++++++.+++.+++++|+++++|||||||||+|++++++
T Consensus 161 Gl~~~ei~~~i~~lk~~~~l~~L~GLHfHiGSQi~d~~~~~~ai~e~~~l~~eL~~~G~~l~~lDIGGGlgV~Y~g~~~~ 240 (559)
T PLN02439 161 GLTATEIVRVVRKLRKEGMLDCLQLLHFHIGSQIPSTSLLKDGVSEAAQIYCELVRLGAPMRVIDIGGGLGIDYDGSKSG 240 (559)
T ss_pred CCCHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcEEEecCCccccCCCcccc
Confidence 99999999999999999998889999999999999999999999999999999999999999999999999999987654
Q ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCcchhccccceEEEEEEEEEecCCCC-CCCCcchhhHhhh--
Q 005135 370 DSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEAVSASVSRAAP-VAMSPLGLQYLVE-- 446 (712)
Q Consensus 370 ~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPGRalvA~agvLVt~Vi~vk~~~~~~-~~~~~~~~~~lvd-- 446 (712)
..++|.+|++++|++.|+.+++++|++.++++|+|++|||||+||+||+||++|++++...... ....+...+.+++
T Consensus 241 ~~~~s~~ydl~eya~~Vv~~l~~~~~~~g~~~p~Ii~EpGR~lVA~agvLvt~V~~~~~~~~~~~~~~~~~~~~~l~~~~ 320 (559)
T PLN02439 241 SSDMSVAYSLEEYANAVVAAVRDVCDRKGVKHPVICSESGRALVSHHSVLIFEAVSASKRGVPAADDDDQYLLLGLTEEL 320 (559)
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCcchhhcceEEEEEEEEeecCCCCCCCccccHHHHHHHHHH
Confidence 3357789999999999999999999999999999999999999999999999999999643111 0001111222222
Q ss_pred -----ch-----hhhHHHHH-------HHHHHHHHhh--------------h----hccCCCCccccccccccccccchh
Q 005135 447 -----GL-----TEDARSDY-------TKMTTAALRA--------------M----EIGASDPVRTYHVNLSIFTSIPDY 491 (712)
Q Consensus 447 -----g~-----~~~~~~~y-------~~~~~~~~~g--------------~----~~~~~~~~~~Y~~N~Svf~SlpD~ 491 (712)
.+ ..++.|+| +++...|.+| + .+...+...+||||||+||||||+
T Consensus 321 ~~~~~~~~~~~~~~~~~e~~~da~~~~~~~~~~f~~g~~~l~~ra~~e~l~~~~~~~~~~~~~~~~y~~NfS~fqslPD~ 400 (559)
T PLN02439 321 RADYENLYAAADRGDYEECLLYADQLKQECVRLFKEGLLSLEQRAAVDGLCELVSKRVGASDPVATYHINLSVFTSIPDF 400 (559)
T ss_pred HhhhhhhhhhcccccHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCChheEEEEeeehhccCccc
Confidence 11 12344666 3445556655 0 112223344899999999999999
Q ss_pred hhcCCcceeeecCCCCCCCCeeeEeecccccCCCccccccCCCcccCCccccCCCCCCCcccEEEeecccchhccccCCC
Q 005135 492 WAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVH 571 (712)
Q Consensus 492 w~i~q~fPI~pl~rl~e~p~~~~~l~G~TCdS~D~I~~fi~~~~~LPl~~l~~G~~~~~~~d~L~~~~~GAYq~~m~s~f 571 (712)
|+|+|+||||||||++|+|+++++|+|+||||||+|++|++...+||||++++. ++++||||||++||||++||+.|
T Consensus 401 Wai~Q~Fpi~Pl~rl~e~p~~~~~l~diTCDsDg~i~~~~~~~~~lplh~~~~~---~~e~y~lg~Fl~GAYQe~lg~~H 477 (559)
T PLN02439 401 WAIGQLFPIVPLHRLDERPTVRGILSDLTCDSDGKIDKFIGGEGSLPLHELEKN---GGGPYYLGMFLGGAYQEALGSLH 477 (559)
T ss_pred eeeCceeeeeeccccCCCcceeEEEeccccCCCCchhcccCCCCCCCCCCCCCC---CCCCCEEEEEeccHhHHHhcccc
Confidence 999999999999999999999999999999999999999997789999999871 14889999999999999999999
Q ss_pred CCCCCCcEEEEEecCCCC-eEEEEEcCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcccccccc
Q 005135 572 NLFGGPSVVRVLQSDGPH-SFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYCGQEHGSNGGDGDTDDYDHGMAN 650 (712)
Q Consensus 572 Nlf~~p~~V~V~~~d~~g-~~~i~r~~~g~t~~dvl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (712)
||||+|++|+|.. +++| +|.+.+.++|+|++|||++|+|+++.|.+++|++++++... + + |+
T Consensus 478 nLfg~~~~v~v~~-~~~~~~~~~~~~~~g~~~~~vl~~~~y~~~~~~~~~~~~~~~~~~~-----------~-~----~~ 540 (559)
T PLN02439 478 NLFGGPSVVRVSQ-SDGPGGFAVTRAVPGQSCADVLRAMQHEPELMFETLKHRAEEYVHK-----------G-G----LS 540 (559)
T ss_pred ccCCCCCEEEEEE-cCCCCceEEEEecCCCCHHHHHHHcCCCHHHHHHHHHHHHHHccCC-----------H-H----HH
Confidence 9999999999984 4444 69999999999999999999999999999999999997222 2 2 34
Q ss_pred HHHHHHHHHHhccCCCcccC
Q 005135 651 NSALASSLAQYFHSMPYLVV 670 (712)
Q Consensus 651 ~~~~~~~~~~~l~~~tyl~~ 670 (712)
+++++.|+++|++||||+.
T Consensus 541 -~~~~~~~~~~l~~~tyl~~ 559 (559)
T PLN02439 541 -GAVAANLARSFHNMPYLSA 559 (559)
T ss_pred -HHHHHHHHHHhCCCCCCCC
Confidence 8999999999999999974
No 5
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase. This subfamily includes plants and biosynthetic prokaryotic arginine decarboxylases (ADC, EC 4.1.1.19). ADC is involved in the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. It catalyzes the decarboxylation of L-arginine to agmatine, which is then hydrolyzed to putrescine by agmatinase. ADC is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Homodimer formation and the presence of both PLP and Mg2+ cofactors may be required for catalytic activity. Prokaryotic ADCs (biodegradative), which are fold type I PLP-dependent enzymes, are not included in this family.
Probab=100.00 E-value=4.7e-76 Score=652.82 Aligned_cols=397 Identities=54% Similarity=0.951 Sum_probs=359.3
Q ss_pred CCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHh
Q 005135 126 LQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSC 205 (712)
Q Consensus 126 ~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~ 205 (712)
++||+||||++.|++|+++|+++|++++.+.+|.++++++||+|||+++.|+++|.++|.+|++|+||+|.+||++|+++
T Consensus 3 ygtPlyvyd~~~i~~~~~~l~~af~~~~~~~~~~~~~~~~YAvKAN~~~~vl~~l~~~G~~~~~g~DvaS~~El~~al~~ 82 (409)
T cd06830 3 YGLPLLLRFPDILRHRIERLNAAFAKAIEEYGYKGKYQGVYPIKVNQQREVVEEIVKAGKRYNIGLEAGSKPELLAALAL 82 (409)
T ss_pred CCCCEEEEcHHHHHHHHHHHHHHHHHHHHhcCcCCceEEEEEeecCCHHHHHHHHHHcCCccceeEEeCCHHHHHHHHhc
Confidence 89999999999999999999999999888889988999999999999999999999999666679999999999999999
Q ss_pred cCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCC
Q 005135 206 LCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGE 285 (712)
Q Consensus 206 G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~ 285 (712)
|+ +++++|++||.|+.++|+.|+..+++|++++|+|||++||++|.+++++.+.+++|+|||||....+++|+.+++.
T Consensus 83 G~--~~~~ii~~~g~K~~~~l~~a~~~~~~g~~v~i~vDs~~EL~~l~~~a~~~~~~~~v~lRinp~~~~~~~~~~~~~~ 160 (409)
T cd06830 83 LK--TPDALIICNGYKDDEYIELALLARKLGHNVIIVIEKLSELDLILELAKKLGVKPLLGVRIKLASKGSGKWQESGGD 160 (409)
T ss_pred CC--CCCCEEEECCcCCHHHHHHHHhcCcCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEEEccCCCCCcceeccCCC
Confidence 95 7889999999999999999998666677778999999999999999998888899999999987777788899999
Q ss_pred CCCCCCCHHHHHHHHHHHHHcC-CCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcC
Q 005135 286 KGKFGLTTTQILRVVKKLEVAE-MLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYD 364 (712)
Q Consensus 286 ~SKFGl~~~e~~~~l~~l~~~~-~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~ 364 (712)
.||||++.+++.++++.+++.+ .++ +.|||||+|||+.+.+.|.++++.+.+++.++++.|+++++||||||||++|.
T Consensus 161 ~sKFGi~~~~~~~~~~~~~~~~~~l~-l~GlH~H~GSq~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~iDiGGGf~v~y~ 239 (409)
T cd06830 161 RSKFGLTASEILEVVEKLKEAGMLDR-LKLLHFHIGSQITDIRRIKSALREAARIYAELRKLGANLRYLDIGGGLGVDYD 239 (409)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCcCCe-EEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEcCCCcccCCC
Confidence 9999999999999999999975 467 99999999999999999999999999999999988999999999999999997
Q ss_pred CCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCcchhccccceEEEEEEEEEecCCCCCCCCcchhhHh
Q 005135 365 GSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEAVSASVSRAAPVAMSPLGLQYL 444 (712)
Q Consensus 365 ~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPGRalvA~agvLVt~Vi~vk~~~~~~~~~~~~~~~~l 444 (712)
.++... ....++++++|++.|.+.++++|.+.+.+.|+|++||||||||++|+|||+|+++|...
T Consensus 240 ~~~~~~-~~~~~~d~~~~~~~i~~~l~~~~~~~~~~~~~l~~EpGR~lva~ag~lvt~V~~~K~~~-------------- 304 (409)
T cd06830 240 GSRSSS-DSSFNYSLEEYANDIVKTVKEICDEAGVPHPTIVTESGRAIVAHHSVLIFEVLGVKRLA-------------- 304 (409)
T ss_pred CCcCcc-cCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCEEEEecCHHhhhhceEEEEEeEEEEecC--------------
Confidence 653210 01225899999999999999999888888899999999999999999999999999631
Q ss_pred hhchhhhHHHHHHHHHHHHHhhhhccCCCCccccccccccccccchhhhcCCcceeeecCCCCCCCCeeeEeecccccCC
Q 005135 445 VEGLTEDARSDYTKMTTAALRAMEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSD 524 (712)
Q Consensus 445 vdg~~~~~~~~y~~~~~~~~~g~~~~~~~~~~~Y~~N~Svf~SlpD~w~i~q~fPI~pl~rl~e~p~~~~~l~G~TCdS~ 524 (712)
++|++|+|+|+++++.|..++.||+.++++.++.+...++|+|+||||.
T Consensus 305 -------------------------------~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Gp~C~s~ 353 (409)
T cd06830 305 -------------------------------DWYFCNFSLFQSLPDSWAIDQLFPIMPLHRLNEKPTRRAVLGDITCDSD 353 (409)
T ss_pred -------------------------------CEEEEecccccCCcchHHhCCCceEEECCCCCCCCceeEEEeccCcCCC
Confidence 4689999999999999999999999999877665678899999999999
Q ss_pred CccccccCCCccc-------CCccc--cCCCCCCCcccEEEeecccchhccccCCCCCCCCCcEEEE
Q 005135 525 GKIDKFIGGGTSL-------PLHEM--VGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 582 (712)
Q Consensus 525 D~I~~fi~~~~~L-------Pl~~l--~~G~~~~~~~d~L~~~~~GAYq~~m~s~fNlf~~p~~V~V 582 (712)
|+|.+ +..+ |||++ ++| |||+|.++|||+.+|+++||+|++|++|+|
T Consensus 354 D~~~~----~~~l~~~~~~~~lp~~~~~~G-------D~l~~~~~GAY~~s~ss~fn~~~~p~~v~v 409 (409)
T cd06830 354 GKIDS----FIDPPDILPTLPLHPLRKDEP-------YYLGFFLVGAYQEILGDLHNLFGDTNAVHV 409 (409)
T ss_pred CEEee----ecccccccccccCCCCCCCCC-------CEEEEEeccHhhHHHHhcccCCCCCCEEeC
Confidence 99987 3343 36654 677 999999999999999999999999999975
No 6
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-67 Score=578.96 Aligned_cols=390 Identities=26% Similarity=0.388 Sum_probs=331.8
Q ss_pred CceeCCCccEEEecCCCCcCCcCCcCHHHHHHHhCCCCCCCCCCCCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCc
Q 005135 82 YFAVNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPKSVGGLGLQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEAR 161 (712)
Q Consensus 82 yf~i~~~G~l~v~p~~~~~l~~~~i~l~el~~~~~~~~~~~~~g~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~ 161 (712)
++..+.+|++++ .++++.+|+++ ++||+||||++.|++|+++++++|+.. +
T Consensus 2 ~~~~~~~~~l~~----------~~~~~~~l~~~-----------~gTP~yvyd~~~l~~~~~~~~~a~~~~--------~ 52 (394)
T COG0019 2 TFFRNKDGELTI----------EGVDLPALAEE-----------FGTPVYVYDEATLRRNARELKSAFPGS--------G 52 (394)
T ss_pred ccccccccceee----------cCccHHHHhhc-----------cCCCEEEEcHHHHHHHHHHHHHHhccC--------C
Confidence 345566777766 46789999999 999999999999999999999999862 5
Q ss_pred ceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEE
Q 005135 162 YQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVI 241 (712)
Q Consensus 162 ~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~I 241 (712)
.+++||+|||+++.|+++|.+.| .|+||+|.+||++|+++|+ +|++|+|+++.|++++|+.|++ +|+. .|
T Consensus 53 ~~i~yAvKAn~~~~il~~l~~~g----~g~Dv~S~gEl~~al~aG~--~~~~I~f~g~~ks~~ei~~a~e---~gi~-~i 122 (394)
T COG0019 53 AKVFYAVKANSNPAILRLLAEEG----SGFDVASLGELELALAAGF--PPERIVFSGPAKSEEEIAFALE---LGIK-LI 122 (394)
T ss_pred ceEEEEEcCCCCHHHHHHHHHhC----CCceecCHHHHHHHHHcCC--ChhhEEECCCCCCHHHHHHHHH---cCCc-EE
Confidence 79999999999999999999999 5999999999999999995 8899999999999999999997 5665 59
Q ss_pred EECCHHHHHHHHHHHHhcCCCceEEEEEeeCCC-CCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecC
Q 005135 242 VLEQEEEVDLVIEISKKLNVRPVIGARAKLRTK-HSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIG 320 (712)
Q Consensus 242 vVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~-~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiG 320 (712)
+|||++||++|.+++++. +.+|+|||||... ++|..++|+++.||||++.+++.++++.+++...++ +.|||||+|
T Consensus 123 ~vdS~~El~~l~~~a~~~--~~~v~lRInP~~~~~th~~~~tg~~~sKFG~~~~~a~~~~~~~~~~~~l~-~~Glh~HiG 199 (394)
T COG0019 123 NVDSEEELERLSAIAPGL--VARVSLRINPGVSAGTHEYIATGGKSSKFGISPEEALDVLERAAKLLGLE-LVGLHFHIG 199 (394)
T ss_pred EeCCHHHHHHHHHhcccc--CceEEEEECCCCCCccCccccCCccccccCCCHHHHHHHHHHHHhcCCCc-eEEEEEeec
Confidence 999999999999999865 6799999999965 455678999999999999999999999998887788 999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH-HcCCCCcEEEEcCCCCcCcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCC
Q 005135 321 SQIPSTALLTDGVGEAAQIYCELV-RLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNV 399 (712)
Q Consensus 321 Sqi~d~~~~~~ai~~~~~~~~~L~-~~G~~l~~IDIGGGlgv~Y~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv 399 (712)
||+.|.+.|.++++.+.+++.++. +.|+++++||+|||||++|.++.. ..++.+|++.+.+.+++. +
T Consensus 200 Sq~~d~~~~~~a~~~~~~~~~~~~~~~g~~l~~inlGGG~gi~Y~~~~~-------~~~~~~~~~~l~~~~~~~-----~ 267 (394)
T COG0019 200 SQITDLDPFEEALAKVEELFGRLAEELGIQLEWLNLGGGLGITYEDEYD-------PPDLAAYAKALKEAFGEY-----A 267 (394)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCCcCcCCCCCCC-------CcCHHHHHHHHHHHHhhc-----c
Confidence 999999999999999999999995 579999999999999999987332 368899999887777754 4
Q ss_pred CCCeEEecCcchhccccceEEEEEEEEEecCCCCCCCCcchhhHhhhchhhhHHHHHHHHHHHHHhhhhccCCCCccccc
Q 005135 400 KHPVLCSESGRAIVSHHSILIFEAVSASVSRAAPVAMSPLGLQYLVEGLTEDARSDYTKMTTAALRAMEIGASDPVRTYH 479 (712)
Q Consensus 400 ~~p~Li~EPGRalvA~agvLVt~Vi~vk~~~~~~~~~~~~~~~~lvdg~~~~~~~~y~~~~~~~~~g~~~~~~~~~~~Y~ 479 (712)
+.++|++||||+||+++|+|||+|+++|+..++.++ ++|+ +|+++.++
T Consensus 268 ~~~~l~~EPGR~iv~~aG~Lvt~V~~~k~~~~~~~v--------~vD~----------------------gm~~~~rp-- 315 (394)
T COG0019 268 EDVELILEPGRAIVANAGVLVTEVLDVKENGERNFV--------IVDG----------------------GMNDLMRP-- 315 (394)
T ss_pred CCCeEEEccchhhhhcceeEEEEEEEEEEecCceEE--------EEec----------------------hhccCcCH--
Confidence 668999999999999999999999999998542232 2343 33333332
Q ss_pred cccccccccchhhhcCCcceeeecCCCC-CCCCeeeEeecccccCCCccccccCCCcccCCccccCCCCCCCcccEEEee
Q 005135 480 VNLSIFTSIPDYWAIGQLFPIVPIHHLD-ERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMF 558 (712)
Q Consensus 480 ~N~Svf~SlpD~w~i~q~fPI~pl~rl~-e~p~~~~~l~G~TCdS~D~I~~fi~~~~~LPl~~l~~G~~~~~~~d~L~~~ 558 (712)
+..+..+++.+ ++.. ..+...++|+|+||+|+|++.+ ++.||. .+++| |+|+|+
T Consensus 316 ------------aly~a~~~~~~-~~~~~~~~~~~~~v~G~~CesgD~~~~----d~~lp~-~~~~G-------D~l~i~ 370 (394)
T COG0019 316 ------------ALYGAYHHIRL-NRTDEDAEREEYDVVGPTCESGDVLAR----DRALPE-PLKVG-------DLLVIL 370 (394)
T ss_pred ------------HHcCCcccccc-ccccCCCCeEEEEEECCCcCCCCeeee----eeeCCC-CCCCC-------CEEEEc
Confidence 11122335554 4433 3556889999999999999875 778883 46698 999999
Q ss_pred cccchhccccCCCCCCCCCcEEEE
Q 005135 559 LGGAYEEALGGVHNLFGGPSVVRV 582 (712)
Q Consensus 559 ~~GAYq~~m~s~fNlf~~p~~V~V 582 (712)
++|||+.+|+++||++++|++|.|
T Consensus 371 ~aGAY~~sm~s~yN~~~~~~ev~v 394 (394)
T COG0019 371 DAGAYGASMSSNYNGRPRPAEVLV 394 (394)
T ss_pred ccchhhhhhhccccCCCCCceeeC
Confidence 999999999999999999999874
No 7
>TIGR01048 lysA diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis.
Probab=100.00 E-value=2.2e-65 Score=568.62 Aligned_cols=413 Identities=25% Similarity=0.370 Sum_probs=348.9
Q ss_pred eCCCccEEEecCCCCcCCcCCcCHHHHHHHhCCCCCCCCCCCCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCccee
Q 005135 85 VNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPKSVGGLGLQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQG 164 (712)
Q Consensus 85 i~~~G~l~v~p~~~~~l~~~~i~l~el~~~~~~~~~~~~~g~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~ 164 (712)
++.+|++.+ .+.++.+|+++ ++||+||+|++.|++|+++|+++|+.+ ++++
T Consensus 3 ~~~~~~~~~----------~~~~~~~l~~~-----------~~tP~~v~d~~~l~~n~~~l~~~~~~~--------~~~i 53 (417)
T TIGR01048 3 ENKDGELFI----------EGVDLLELAEE-----------FGTPLYVYDEETIRERFRAYKEAFGGA--------YSLV 53 (417)
T ss_pred cCCCCceEE----------CCeeHHHHHHh-----------hCCCEEEEeHHHHHHHHHHHHHhhCCC--------CceE
Confidence 456777755 35689999999 999999999999999999999999741 4789
Q ss_pred eeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEEC
Q 005135 165 VFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLE 244 (712)
Q Consensus 165 ~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVD 244 (712)
+|++|||+++.|++.+.+.| +|+||+|.+|+++++++|+ ++++|+++++.|+.++|+.|++ .|+. .++||
T Consensus 54 ~yavKaN~~~~vl~~l~~~G----~g~dvaS~~E~~~~~~~G~--~~~~I~~~gp~k~~~~l~~a~~---~gi~-~i~iD 123 (417)
T TIGR01048 54 CYAVKANSNLALLRLLAELG----SGFDVVSGGELYRALAAGF--PPEKIVFNGNGKSRAELERALE---LGIR-CINVD 123 (417)
T ss_pred EEEehhCCCHHHHHHHHHcC----CcEEEeCHHHHHHHHHcCC--CcceEEEeCCCCCHHHHHHHHH---cCCC-EEEeC
Confidence 99999999999999999999 5999999999999999995 7789999999999999999987 4543 48999
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEEeeCCCC-CCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCC
Q 005135 245 QEEEVDLVIEISKKLNVRPVIGARAKLRTKH-SGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQI 323 (712)
Q Consensus 245 s~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~-~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi 323 (712)
|++||++|.+++++.+.+++|+||||+.... .+.+.++++..+|||++++++.++++.+++.+.++ +.|||||+|||+
T Consensus 124 s~~el~~l~~~a~~~~~~~~v~lRIn~~~~~~~~~~~~~g~~~srfGi~~~~~~~~~~~~~~~~~l~-l~Glh~H~gs~~ 202 (417)
T TIGR01048 124 SESELELLNEIAPELGKKARVSLRVNPGVDAKTHPYISTGLEDSKFGIDVEEALEAYLYALQLPHLE-LVGIHCHIGSQI 202 (417)
T ss_pred CHHHHHHHHHHHHhcCCCceEEEEECCCCCCCCCCCeecCCCCCCCCCCHHHHHHHHHHHHhCCCCC-EEEEEEeCCCCC
Confidence 9999999999998888888999999997653 34467788889999999999999999998888888 999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCe
Q 005135 324 PSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPV 403 (712)
Q Consensus 324 ~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~ 403 (712)
.|.+.+.++++.+.+++.++++.|.++++||+|||||++|..... ++++++|++.|...++++|. .+. .++
T Consensus 203 ~d~~~~~~~~~~~~~~~~~l~~~g~~l~~idiGGG~~~~y~~~~~-------~~~~~~~~~~i~~~~~~~~~-~~~-~~~ 273 (417)
T TIGR01048 203 TDLSPFVEAAEKVVDLVEELKAEGIDLEFLDLGGGLGIPYTPEEE-------PPDPEEYAQAILAALEGYAD-LGL-DPK 273 (417)
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCccEEEeCCccccccCCCCC-------CCCHHHHHHHHHHHHHHHHh-cCC-CcE
Confidence 999999999999999999999889999999999999999975432 47999999999999999876 332 589
Q ss_pred EEecCcchhccccceEEEEEEEEEecCCCCCCCCcchhhHhhhchhhhHHHHHHHHHHHHHhhhhccCCCCccccccccc
Q 005135 404 LCSESGRAIVSHHSILIFEAVSASVSRAAPVAMSPLGLQYLVEGLTEDARSDYTKMTTAALRAMEIGASDPVRTYHVNLS 483 (712)
Q Consensus 404 Li~EPGRalvA~agvLVt~Vi~vk~~~~~~~~~~~~~~~~lvdg~~~~~~~~y~~~~~~~~~g~~~~~~~~~~~Y~~N~S 483 (712)
|++|||||+||++|+||++|+++|...+..+. ++|+ |++.+.++ +
T Consensus 274 l~~EPGR~lva~~g~lv~~V~~~k~~~~~~~~--------~~d~----------------------g~~~~~~~-----~ 318 (417)
T TIGR01048 274 LILEPGRSIVANAGVLLTRVGFVKEVGSRNFV--------IVDA----------------------GMNDLIRP-----A 318 (417)
T ss_pred EEEccCceeeccceEEEEEEEEEEecCCCEEE--------EEeC----------------------Ccccchhh-----h
Confidence 99999999999999999999999986542221 2232 22221111 1
Q ss_pred cccccchhhhcCCcceeeecCCCCCCCCeeeEeecccccCCCccccccCCCcccCCccccCCCCCCCcccEEEeecccch
Q 005135 484 IFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAY 563 (712)
Q Consensus 484 vf~SlpD~w~i~q~fPI~pl~rl~e~p~~~~~l~G~TCdS~D~I~~fi~~~~~LPl~~l~~G~~~~~~~d~L~~~~~GAY 563 (712)
+ .+..+|+.++++.++.+...++|+|+||++.|+|.+ +..|| ++++| |+|+|.++|||
T Consensus 319 ~---------~~~~~~~~~~~~~~~~~~~~~~v~G~~C~~~D~l~~----~~~lp--~l~~G-------D~l~~~~~GAY 376 (417)
T TIGR01048 319 L---------YGAYHHIIVANRTNDAPTEVADVVGPLCESGDVLAR----DRELP--EVEPG-------DLLAVFDAGAY 376 (417)
T ss_pred h---------ccccceEEEccCCCCCCceEEEEEeCCcCCCCEEee----ccCCC--CCCCC-------CEEEEeCCCcc
Confidence 1 123356666654444456789999999999999876 45666 89999 99999999999
Q ss_pred hccccCCCCCCCCCcEEEEEecCCCCeEEEEEcCCCCCHHHHHHhc
Q 005135 564 EEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVM 609 (712)
Q Consensus 564 q~~m~s~fNlf~~p~~V~V~~~d~~g~~~i~r~~~g~t~~dvl~~~ 609 (712)
+.+|+++||++++|++|.+. + ++++++| +++|++|+++.+
T Consensus 377 ~~~~~~~fn~~~~p~~v~~~--~--~~~~~ir--~~e~~~~~~~~~ 416 (417)
T TIGR01048 377 GASMSSNYNSRPRPAEVLVD--G--GQARLIR--RRETYEDLLALE 416 (417)
T ss_pred hHHHHHHhhCCCCCeEEEEE--C--CEEEEEE--eCCCHHHHHhhc
Confidence 99999999999999999997 2 4688888 789999999764
No 8
>PLN02537 diaminopimelate decarboxylase
Probab=100.00 E-value=2.4e-64 Score=559.57 Aligned_cols=402 Identities=18% Similarity=0.247 Sum_probs=335.2
Q ss_pred cCCcCHHHHHHHhCCCCCCCCCCC-CCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHH
Q 005135 103 HQEIDLLKIVKKVSDPKSVGGLGL-QLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIV 181 (712)
Q Consensus 103 ~~~i~l~el~~~~~~~~~~~~~g~-~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~ 181 (712)
..++++.+|+++ + +||+||+|++.|++|+++|+++|++. +.+++|++|||+++.|++.+.
T Consensus 3 ~~~~~~~~l~~~-----------~~~tP~~v~d~~~l~~N~~~~~~~~~~~--------~~~i~yavKaN~~~~il~~l~ 63 (410)
T PLN02537 3 CEGLRVQDIMES-----------VEKRPFYLYSKPQITRNYEAYKEALEGL--------RSIIGYAIKANNNLKILEHLR 63 (410)
T ss_pred ECCccHHHHHHh-----------cCCCCeEEEeHHHHHHHHHHHHHHhccC--------CceEEEEehhcCCHHHHHHHH
Confidence 356789999999 6 89999999999999999999999741 467999999999999999999
Q ss_pred HcCCCCccceEecCHHHHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCC
Q 005135 182 KFGSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNV 261 (712)
Q Consensus 182 ~~G~~~~~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~ 261 (712)
+.| +|+||+|.+|+++++++|+ ++++|++.+|.|++++|++|++ .| +.++|||++||++|.+++++.+.
T Consensus 64 ~~G----~~~~~~S~~E~~~al~~G~--~~~~ii~~g~~k~~~~l~~a~~---~g--v~i~ids~~el~~l~~~a~~~~~ 132 (410)
T PLN02537 64 ELG----CGAVLVSGNELRLALRAGF--DPTRCIFNGNGKLLEDLVLAAQ---EG--VFVNVDSEFDLENIVEAARIAGK 132 (410)
T ss_pred HcC----CCEEEeCHHHHHHHHHcCC--CcceEEEECCCCCHHHHHHHHH---CC--CEEEECCHHHHHHHHHHHHhcCC
Confidence 999 5899999999999999996 7889999999999999999986 45 46899999999999999998888
Q ss_pred CceEEEEEeeCCC-CCCCccccCCCCCCCCCCHHHHHHHHHHHHHcC-CCCceeEEEEecCCCCCChHHHHHHHHHHHHH
Q 005135 262 RPVIGARAKLRTK-HSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAE-MLDCFQLLHFHIGSQIPSTALLTDGVGEAAQI 339 (712)
Q Consensus 262 ~~~IgLRVn~~~~-~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~-~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~ 339 (712)
+++|+|||||+.. .++...+||...+|||++.+++.++++.+++.+ .++ +.|||||+|||+.+.+.|.++++.+.++
T Consensus 133 ~~~v~lRvnp~~~~~~~~~i~tG~~~sRfGi~~~~~~~~~~~~~~~~~~l~-l~Glh~H~gs~~~~~~~~~~~~~~~~~~ 211 (410)
T PLN02537 133 KVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPNELK-LVGAHCHLGSTITKVDIFRDAAVLMVNY 211 (410)
T ss_pred CceEEEEECCCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHhCCCCCc-EEEEEeccCCCCCchHHHHHHHHHHHHH
Confidence 8999999999754 334456788889999999999999999999887 678 9999999999999999999999999999
Q ss_pred HHHHHHcCCCCcEEEEcCCCCcCcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCcchhccccceE
Q 005135 340 YCELVRLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSIL 419 (712)
Q Consensus 340 ~~~L~~~G~~l~~IDIGGGlgv~Y~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPGRalvA~agvL 419 (712)
+..+++.|.++++||||||||++|...... .+++++|++.|.+.+++ .+ ++|++||||||||++++|
T Consensus 212 ~~~~~~~g~~~~~idiGGGf~v~y~~~~~~------~~~~~~~~~~i~~~~~~----~~---~~li~EPGR~lva~ag~l 278 (410)
T PLN02537 212 VDEIRAQGFELSYLNIGGGLGIDYYHAGAV------LPTPRDLIDTVRELVLS----RD---LTLIIEPGRSLIANTCCF 278 (410)
T ss_pred HHHHHHcCCCccEEEcCCCccccCCCCCCC------CCCHHHHHHHHHHHHHh----cC---CEEEEccChhhhccceEE
Confidence 999999999999999999999999632211 25899999988777763 33 589999999999999999
Q ss_pred EEEEEEEEecCCCCCCCCcchhhHhhhchhhhHHHHHHHHHHHHHhhhhccCCCCccccccccccccccchhhhcCCcce
Q 005135 420 IFEAVSASVSRAAPVAMSPLGLQYLVEGLTEDARSDYTKMTTAALRAMEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFP 499 (712)
Q Consensus 420 Vt~Vi~vk~~~~~~~~~~~~~~~~lvdg~~~~~~~~y~~~~~~~~~g~~~~~~~~~~~Y~~N~Svf~SlpD~w~i~q~fP 499 (712)
|++|+++|+..+..+. ++|+ +++.+ ++.++|++. ++
T Consensus 279 v~~V~~~k~~~~~~~~--------~~dg----------------------g~~~~-----~~p~~~~~~---------~~ 314 (410)
T PLN02537 279 VNRVTGVKTNGTKNFI--------VIDG----------------------SMAEL-----IRPSLYDAY---------QH 314 (410)
T ss_pred EEEEEEEeecCCcEEE--------EEeC----------------------ccccc-----cchHhhccc---------cc
Confidence 9999999986442221 2343 22221 222333221 23
Q ss_pred eeecCCC-CCCCCeeeEeecccccCCCccccccCCCcccCCccccCCCCCCCcccEEEeecccchhccccCCCCCCCCCc
Q 005135 500 IVPIHHL-DERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPS 578 (712)
Q Consensus 500 I~pl~rl-~e~p~~~~~l~G~TCdS~D~I~~fi~~~~~LPl~~l~~G~~~~~~~d~L~~~~~GAYq~~m~s~fNlf~~p~ 578 (712)
+.++... ...+...++|+||||+|.|++.+ +..|| ++++| |+|+|.++|||+.+|+++||+|++|+
T Consensus 315 ~~~~~~~~~~~~~~~~~v~G~~C~~~D~l~~----~~~lp--~~~~G-------D~l~~~~~GAY~~s~~s~fn~~~~p~ 381 (410)
T PLN02537 315 IELVSPPPPDAEVSTFDVVGPVCESADFLGK----DRELP--TPPKG-------AGLVVHDAGAYCMSMASTYNLKMRPP 381 (410)
T ss_pred eeEccCCCCCCCceEEEEecCccCCCCEEEE----cccCC--CCCCC-------CEEEEeCCCcccHhhhHHhcCCCCCe
Confidence 3333221 12345678999999999999876 56777 78999 99999999999999999999999999
Q ss_pred EEEEEecCCCCeEEEEEcCCCCCHHHHHHhcC
Q 005135 579 VVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQ 610 (712)
Q Consensus 579 ~V~V~~~d~~g~~~i~r~~~g~t~~dvl~~~~ 610 (712)
+|.++ . +|+++++| +++|++|+++.++
T Consensus 382 ~v~~~-~--~~~~~~ir--~~et~~~~~~~~~ 408 (410)
T PLN02537 382 EYWVE-E--DGSITKIR--HAETFDDHLRFFE 408 (410)
T ss_pred EEEEE-C--CCEEEEEE--ecCCHHHHHHHhc
Confidence 99997 2 35799898 7899999998875
No 9
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=100.00 E-value=3e-62 Score=539.47 Aligned_cols=371 Identities=18% Similarity=0.221 Sum_probs=306.2
Q ss_pred CCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHh
Q 005135 126 LQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSC 205 (712)
Q Consensus 126 ~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~ 205 (712)
.++||||||.+.|++|+++|+++|+ +++++||||||+++.|++.|.+.| +|+||+|.+||++|+++
T Consensus 11 ~~~p~yv~d~~~i~~~~~~l~~~lp----------~~~~~YAvKaN~~~~il~~l~~~G----~g~DvaS~gEl~~al~~ 76 (394)
T cd06831 11 GKNAFFVGDLGKIVKKHSQWQTVMA----------QIKPFYTVRCNSTPAVLEILAALG----TGFACSSKNEMALVQEL 76 (394)
T ss_pred CCCCeEEEEHHHHHHHHHHHHHHCC----------CCeEEeeeccCCCHHHHHHHHHcC----CCeEeCCHHHHHHHHhc
Confidence 4899999999999999999999996 368999999999999999999999 69999999999999999
Q ss_pred cCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCC
Q 005135 206 LCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGE 285 (712)
Q Consensus 206 G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~ 285 (712)
|+ +|++|+|++|.|+.++|+.|++ .|++ +|++||++||++|.+.++ .++|.|||++....+ +...
T Consensus 77 G~--~~~~Iif~gp~K~~~~l~~a~~---~Gv~-~i~vDS~~El~~i~~~~~----~~~v~lRi~~~~~~~-----~~~~ 141 (394)
T cd06831 77 GV--SPENIIYTNPCKQASQIKYAAK---VGVN-IMTCDNEIELKKIARNHP----NAKLLLHIATEDNIG-----GEEM 141 (394)
T ss_pred CC--CcCCEEEeCCCCCHHHHHHHHH---CCCC-EEEECCHHHHHHHHHhCC----CCcEEEEEeccCCCC-----CCcc
Confidence 95 8999999999999999999987 5665 689999999999987653 368999999864321 2234
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCC
Q 005135 286 KGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDG 365 (712)
Q Consensus 286 ~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~ 365 (712)
.+|||++.+++.++++.+++.+ ++ +.|||||+|||+.+.+.|.++++.+.+++..+++.|.++++||||||||..
T Consensus 142 ~~KFGi~~~~~~~~l~~~~~~~-l~-~~Gih~HiGS~~~~~~~~~~a~~~~~~~~~~~~~~g~~l~~ldiGGGf~~~--- 216 (394)
T cd06831 142 NMKFGTTLKNCRHLLECAKELD-VQ-IVGVKFHVSSSCKEYQTYVHALSDARCVFDMAEEFGFKMNMLDIGGGFTGS--- 216 (394)
T ss_pred CCCCCCCHHHHHHHHHHHHHCC-Ce-EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEeCCCcCCC---
Confidence 6899999999999999999986 57 999999999999999999999999888888888889999999999999841
Q ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCcchhccccceEEEEEEEEEecCCCCCCCCcchhhHhh
Q 005135 366 SKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEAVSASVSRAAPVAMSPLGLQYLV 445 (712)
Q Consensus 366 s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPGRalvA~agvLVt~Vi~vk~~~~~~~~~~~~~~~~lv 445 (712)
.+++++|++.|...++++++.. ..++|++|||||+||++++|||+|+++|...+..... .+
T Consensus 217 ----------~~~~~~~~~~i~~~l~~~~~~~--~~~~li~EPGR~lva~ag~lvt~V~~~K~~~~~~~~~-------~~ 277 (394)
T cd06831 217 ----------EIQLEEVNHVIRPLLDVYFPEG--SGIQIIAEPGSYYVSSAFTLAVNVIAKKAVENDKHLS-------SV 277 (394)
T ss_pred ----------CCCHHHHHHHHHHHHHHhcCcC--CCCEEEEeCChhhhhcceEEEEEEEEEEeeccccccc-------cc
Confidence 2589999999999998865431 2469999999999999999999999999764310000 11
Q ss_pred hchhhhHHHHHHHHHHHHHhhhhccCCCCccccccccccccccchhhhcCCcceeeecCC-CCCCCCeeeEeecccccCC
Q 005135 446 EGLTEDARSDYTKMTTAALRAMEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHH-LDERPGVRGVLSDLTCDSD 524 (712)
Q Consensus 446 dg~~~~~~~~y~~~~~~~~~g~~~~~~~~~~~Y~~N~Svf~SlpD~w~i~q~fPI~pl~r-l~e~p~~~~~l~G~TCdS~ 524 (712)
|+ . +......+||+|.++|+++.+.+...+.++..+... ..+.....++|+||||||.
T Consensus 278 d~-~--------------------~~~~~~~~~~~~~~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Gp~C~s~ 336 (394)
T cd06831 278 EK-N--------------------GSDEPAFVYYMNDGVYGSFASKLSEKLNTTPEVHKKYKEDEPLFTSSLWGPSCDEL 336 (394)
T ss_pred cc-c--------------------CCCCceeEEEEcCceechhhhhhcccCcccceeeccCCCCCCceeEEEEeCCCCHH
Confidence 11 0 011123579999999999988763322222222111 1123356799999999999
Q ss_pred CccccccCCCcccCCccccCCCCCCCcccEEEeecccchhccccCCCCCCCCCcEEEEE
Q 005135 525 GKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVL 583 (712)
Q Consensus 525 D~I~~fi~~~~~LPl~~l~~G~~~~~~~d~L~~~~~GAYq~~m~s~fNlf~~p~~V~V~ 583 (712)
|++.+ +..|| ++++| |||+|.++|||+.+|+++||+|++|++|++.
T Consensus 337 D~l~~----~~~Lp--~l~~G-------D~l~i~~~GAY~~s~ss~Fn~~~~p~~v~~~ 382 (394)
T cd06831 337 DQIVE----SCLLP--ELNVG-------DWLIFDNMGAGSLHEPSTFNDFQRPAIYYMM 382 (394)
T ss_pred Heecc----cCcCC--CCCCC-------CEEEECCCCCcccccccCCCCCCCCcEEEEE
Confidence 99876 56666 89999 9999999999999999999999999999997
No 10
>PRK11165 diaminopimelate decarboxylase; Provisional
Probab=100.00 E-value=7.6e-62 Score=540.85 Aligned_cols=394 Identities=20% Similarity=0.280 Sum_probs=314.2
Q ss_pred CCcCHHHHHHHhCCCCCCCCCCCCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHc
Q 005135 104 QEIDLLKIVKKVSDPKSVGGLGLQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKF 183 (712)
Q Consensus 104 ~~i~l~el~~~~~~~~~~~~~g~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~ 183 (712)
....+.+|+++ ++||+||+|++.|++|++++++ |+ +++||+|||+++.|++.+.++
T Consensus 13 ~~~~~~~l~~~-----------~~tP~~v~d~~~l~~n~~~l~~-~~------------~i~yavKan~~~~il~~~~~~ 68 (420)
T PRK11165 13 TAENLLRLPAE-----------YGTPLWVYDADIIRRRIAQLRQ-FD------------VIRFAQKACSNIHILRLMREQ 68 (420)
T ss_pred CCcCHHHHHHH-----------hCCCEEEEcHHHHHHHHHHHhc-cC------------cceEEehhCCCHHHHHHHHHc
Confidence 45579999998 9999999999999999999984 52 578999999999999999999
Q ss_pred CCCCccceEecCHHHHHHHHHhcCCCCC----CcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhc
Q 005135 184 GSQFRFGLEAGSKPELLLAMSCLCKGSP----EALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKL 259 (712)
Q Consensus 184 G~~~~~GlEvaS~~EL~~Al~~G~~~~p----~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~ 259 (712)
| +|+||+|.+|+++|+++|+ +| ++|+|.++.|+.++|+.|++ +| +.+++||++||++|.+++++
T Consensus 69 G----~g~dvaS~~E~~~a~~~G~--~~~~~~~~Ii~~gp~k~~~~l~~a~~---~g--v~i~vDs~~el~~i~~~~~~- 136 (420)
T PRK11165 69 G----VKVDAVSLGEIERALAAGY--KPGTEPDEIVFTADVIDRATLARVVE---LK--IPVNAGSIDMLDQLGQVSPG- 136 (420)
T ss_pred C----CCEEEeCHHHHHHHHHcCC--CCCCCCCeEEEeCCCCCHHHHHHHHH---CC--CEEEECCHHHHHHHHHhcCC-
Confidence 9 5999999999999999996 66 58999999999999999987 45 46899999999999998763
Q ss_pred CCCceEEEEEeeCCCCC-CCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHH
Q 005135 260 NVRPVIGARAKLRTKHS-GHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQ 338 (712)
Q Consensus 260 g~~~~IgLRVn~~~~~~-~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~ 338 (712)
.+|+||||+..... +.+.++++..||||++.+++.++++.+++.+ ++ +.|||||+|||+ +.+.+.+.++.+.+
T Consensus 137 ---~~v~lRvn~~~~~~~~~~~~~~~~~sKFGi~~~~~~~~~~~~~~~~-l~-l~GlH~H~GS~~-~~~~~~~~~~~l~~ 210 (420)
T PRK11165 137 ---HRVWLRINPGFGHGHSQKTNTGGENSKHGIWHEDLPAALAVIQRYG-LK-LVGIHMHIGSGV-DYGHLEQVCGAMVR 210 (420)
T ss_pred ---CcEEEEECCCCCCCCCCceecCCCCCCCCCCHHHHHHHHHHHHhCC-Cc-EEEEEEeccCCC-ChHHHHHHHHHHHH
Confidence 68999999976533 3467888999999999999999888888765 67 999999999998 77776666655544
Q ss_pred HHHHHHHcCCCCcEEEEcCCCCcCcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCcchhccccce
Q 005135 339 IYCELVRLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSI 418 (712)
Q Consensus 339 ~~~~L~~~G~~l~~IDIGGGlgv~Y~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPGRalvA~agv 418 (712)
.+++.|.++++|||||||+++|..... ++++++|++.+....+++.+..+ ..++|++||||||||++|+
T Consensus 211 ---~~~~~g~~~~~IdiGGGf~~~y~~~~~-------~~d~~~~~~~~~~~~~~~~~~~~-~~~~l~~EPGR~lva~ag~ 279 (420)
T PRK11165 211 ---QVIELGQDIEAISAGGGLSIPYREGEE-------PVDTEHYFGLWDAARKRIARHLG-HPVKLEIEPGRFLVAESGV 279 (420)
T ss_pred ---HHHHhCCCCcEEEeCCCcccCCCCCCC-------CCCHHHHHHHHHHHHHHHHhhcC-CCceEEEccCcceeecceE
Confidence 445669999999999999999975432 47899999877666665554433 2469999999999999999
Q ss_pred EEEEEEEEEecCCCCCCCCcchhhHhhhchhhhHHHHHHHHHHHHHhhhhccCCCCccccccccccccccchhhhcCCcc
Q 005135 419 LIFEAVSASVSRAAPVAMSPLGLQYLVEGLTEDARSDYTKMTTAALRAMEIGASDPVRTYHVNLSIFTSIPDYWAIGQLF 498 (712)
Q Consensus 419 LVt~Vi~vk~~~~~~~~~~~~~~~~lvdg~~~~~~~~y~~~~~~~~~g~~~~~~~~~~~Y~~N~Svf~SlpD~w~i~q~f 498 (712)
||++|+++|...+...+ ++|+ |++.+.++ ++|++ .+
T Consensus 280 lvt~V~~~K~~~~~~~~--------i~D~----------------------G~n~l~~p-----~~~~~---------~~ 315 (420)
T PRK11165 280 LVAQVRAVKQMGSRHFV--------LVDA----------------------GFNDLMRP-----AMYGS---------YH 315 (420)
T ss_pred EEEEEEEEEecCCcEEE--------EEeC----------------------CcccCchh-----hhccc---------cc
Confidence 99999999986542222 2332 23332222 22222 23
Q ss_pred eeeecCCCCC----CCCeeeEeecccccCCCcccccc-C--CCcccCCccccCCCCCCCcccEEEeecccchhccccCCC
Q 005135 499 PIVPIHHLDE----RPGVRGVLSDLTCDSDGKIDKFI-G--GGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVH 571 (712)
Q Consensus 499 PI~pl~rl~e----~p~~~~~l~G~TCdS~D~I~~fi-~--~~~~LPl~~l~~G~~~~~~~d~L~~~~~GAYq~~m~s~f 571 (712)
|+.++++... .++.+++|+|++|+|.|++.+-. + .+..|| ++++| |+|+|.++|||+++|+++|
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~v~Gp~C~~~D~l~~~~~~~~~~~~lP--~l~~G-------D~l~i~~~GAY~~~~ss~f 386 (420)
T PRK11165 316 HISVLAADGRSLEEAPTVDTVVAGPLCESGDVFTQQEGGVVETRALP--QVQVG-------DYLVFHDTGAYGASMSSNY 386 (420)
T ss_pred ceEEecCCCcccccCCceEEEEEeCCCCCCCEEeeccCcccceeECC--CCCCC-------CEEEEecCCCCcHHHHHhh
Confidence 4444432211 13578999999999999986410 0 014555 89999 9999999999999999999
Q ss_pred CCCCCCcEEEEEecCCCCeEEEEEcCCCCCHHHHHHhc
Q 005135 572 NLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVM 609 (712)
Q Consensus 572 Nlf~~p~~V~V~~~d~~g~~~i~r~~~g~t~~dvl~~~ 609 (712)
|++++|++|.+. + |+++++| ++||++|++++.
T Consensus 387 n~~~~p~~v~~~--~--g~~~~ir--~~~~~~d~~~~~ 418 (420)
T PRK11165 387 NSRPLLPEVLFD--N--GQARLIR--RRQTIEELLALE 418 (420)
T ss_pred cCCCCCcEEEEE--C--CEEEEEE--eCCCHHHHHhhh
Confidence 999999999997 3 5799999 789999998764
No 11
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=100.00 E-value=1.6e-62 Score=539.74 Aligned_cols=368 Identities=24% Similarity=0.305 Sum_probs=298.6
Q ss_pred CCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHhc
Q 005135 127 QLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCL 206 (712)
Q Consensus 127 ~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~G 206 (712)
..|+||||++.|++|+++|+++|+. +++++||+|||+++.|++.|.+.| +|+||+|++||++|+++|
T Consensus 2 ~~~~~v~d~~~l~~~~~~l~~a~~~---------~~~~~yAvKaN~~~~il~~l~~~G----~g~DvaS~~El~~al~~G 68 (379)
T cd06836 2 HPAVGLYDLDGFRALVARLTAAFPA---------PVLHTFAVKANPLVPVLRLLAEAG----AGAEVASPGELELALAAG 68 (379)
T ss_pred CCEEEEEcHHHHHHHHHHHHHhcCC---------CcEEEEEEecCCCHHHHHHHHHcC----CcEEEcCHHHHHHHHHcC
Confidence 3589999999999999999999974 478999999999999999999999 699999999999999999
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHh-cCCCceEEEEEeeCCCCCCC-ccccCC
Q 005135 207 CKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKK-LNVRPVIGARAKLRTKHSGH-FGSTSG 284 (712)
Q Consensus 207 ~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~-~g~~~~IgLRVn~~~~~~~~-~~~tgg 284 (712)
+ +|++|+|++|.|+.++|+.|++ +|+ .|++||++||++|.+++++ .+.+.+|+|||||.....++ -..+++
T Consensus 69 ~--~~~~Ii~~gp~K~~~~L~~ai~---~gv--~i~iDS~~El~~i~~~a~~~~~~~~~v~lRvnp~~~~~~~~~~~~~~ 141 (379)
T cd06836 69 F--PPERIVFDSPAKTRAELREALE---LGV--AINIDNFQELERIDALVAEFKEASSRIGLRVNPQVGAGKIGALSTAT 141 (379)
T ss_pred C--ChhhEEEeCCCCCHHHHHHHHH---CCC--EEEECCHHHHHHHHHHHHHhcCCCceEEEEECCCCCCCCccccccCC
Confidence 6 8899999999999999999997 454 6899999999999999987 67778999999997543333 345678
Q ss_pred CCCCCCCCHH--HHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHH-cC-CCCcEEEEcCCCC
Q 005135 285 EKGKFGLTTT--QILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVR-LG-ANMQVIDIGGGLG 360 (712)
Q Consensus 285 ~~SKFGl~~~--e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~-~G-~~l~~IDIGGGlg 360 (712)
..||||++.+ ++.++++.+.... . +.|||||+|||+.+++.+.++++++.+++.++.+ .| .++++||||||||
T Consensus 142 ~~skFG~~~~~~~~~~~~~~~~~~~--~-l~GlH~H~GS~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~~IDiGGGf~ 218 (379)
T cd06836 142 ATSKFGVALEDGARDEIIDAFARRP--W-LNGLHVHVGSQGCELSLLAEGIRRVVDLAEEINRRVGRRQITRIDIGGGLP 218 (379)
T ss_pred CCCCCCcCcchhHHHHHHHHHhcCC--C-eEEEEEecccCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEeCCccc
Confidence 8999999998 5666666544332 3 7899999999999999999999999999999976 46 5899999999999
Q ss_pred cCcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCcchhccccceEEEEEEEEEecCCCCCCCCcch
Q 005135 361 IDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEAVSASVSRAAPVAMSPLG 440 (712)
Q Consensus 361 v~Y~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPGRalvA~agvLVt~Vi~vk~~~~~~~~~~~~~ 440 (712)
++|..... ++++++|++.|...+++.+.. .++|++||||||||++|+||++|+++|+..+..+++
T Consensus 219 v~y~~~~~-------~~~~~~~~~~i~~~l~~~~~~----~~~l~~EPGR~lva~ag~lv~~V~~~K~~~~~~~~~---- 283 (379)
T cd06836 219 VNFESEDI-------TPTFADYAAALKAAVPELFDG----RYQLVTEFGRSLLAKCGTIVSRVEYTKSSGGRRIAI---- 283 (379)
T ss_pred cCCCCCCC-------CCCHHHHHHHHHHHHHHHhcc----CcEEEEecChheeccceEEEEEEEEEEecCCeEEEE----
Confidence 99976432 478999999999988876642 469999999999999999999999999875422222
Q ss_pred hhHhhhchhhhHHHHHHHHHHHHHhhhhccCCCCccccccccccccccchhhhcCCcceeeecCC---CCCCCCeeeEee
Q 005135 441 LQYLVEGLTEDARSDYTKMTTAALRAMEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHH---LDERPGVRGVLS 517 (712)
Q Consensus 441 ~~~lvdg~~~~~~~~y~~~~~~~~~g~~~~~~~~~~~Y~~N~Svf~SlpD~w~i~q~fPI~pl~r---l~e~p~~~~~l~ 517 (712)
+|+ |++.+.++-+ .++.|. +++.++.+ ....+...++|+
T Consensus 284 ----~d~----------------------G~~~~~~~~~--------~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~ 325 (379)
T cd06836 284 ----THA----------------------GAQVATRTAY--------APDDWP----LRVTVFDANGEPKTGPEVVTDVA 325 (379)
T ss_pred ----EcC----------------------Cccccchhhh--------ccccCc----eEEecccccccccCCCceEEEEE
Confidence 222 2222211100 112221 12222221 112235689999
Q ss_pred cccccCCCccccccCCCcccCCccccCCCCCCCcccEEEeecccchhccccCCCCCCCCCcEEEEE
Q 005135 518 DLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVL 583 (712)
Q Consensus 518 G~TCdS~D~I~~fi~~~~~LPl~~l~~G~~~~~~~d~L~~~~~GAYq~~m~s~fNlf~~p~~V~V~ 583 (712)
|+||++.|+|.+ +..|| ++++| |+|+|.++|||+.+|+++||+|++|++|.++
T Consensus 326 G~~C~~~D~l~~----~~~lp--~l~~G-------D~l~~~~~GAY~~~~ss~fn~~~~p~~~~~~ 378 (379)
T cd06836 326 GPCCFAGDVLAK----ERALP--PLEPG-------DYVAVHDTGAYYFSSHSSYNSLPRPAVYGVR 378 (379)
T ss_pred eCCCCCCCEEee----cccCC--CCCCC-------CEEEEeCCCcchHHHHHhhhCCCCCeEEEec
Confidence 999999999876 55666 79999 9999999999999999999999999999885
No 12
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=100.00 E-value=1.2e-61 Score=529.43 Aligned_cols=367 Identities=28% Similarity=0.372 Sum_probs=330.2
Q ss_pred CcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHhcC
Q 005135 128 LPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLC 207 (712)
Q Consensus 128 tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~G~ 207 (712)
||+||+|++.|++|+++|+++++. +++++|++|+|+++.|++.+.+.| +|+||+|.+|+++++++|+
T Consensus 1 TP~~vid~~~l~~n~~~l~~~~~~---------~~~i~~avKan~~~~i~~~l~~~G----~g~~vas~~E~~~~~~~G~ 67 (368)
T cd06810 1 TPFYVYDLDIIRAHYAALKEALPS---------GVKLFYAVKANPNPHVLRTLAEAG----TGFDVASKGELALALAAGV 67 (368)
T ss_pred CCEEEeeHHHHHHHHHHHHHhCCC---------CCeEEEEEccCCCHHHHHHHHHcC----CcEEEeCHHHHHHHHHcCC
Confidence 799999999999999999999862 478999999999999999999999 5999999999999999995
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCC
Q 005135 208 KGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKG 287 (712)
Q Consensus 208 ~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~S 287 (712)
++++|++.++.|++++|+.|++ +|+ ..++|||++||++|.+++++.+.+.+|+||||+.....++|..+++..+
T Consensus 68 --~~~~iv~~gp~~~~~~l~~~~~---~~~-~~~~vds~~el~~l~~~~~~~~~~~~v~lrin~g~~~~~~~~~~~~~~s 141 (368)
T cd06810 68 --PPERIIFTGPAKSVSEIEAALA---SGV-DHIVVDSLDELERLNELAKKLGPKARILLRVNPDVSAGTHKISTGGLKS 141 (368)
T ss_pred --CHHHEEEcCCCCCHHHHHHHHH---CCC-CEEEeCCHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcccCccCCCCC
Confidence 6788999899999999999987 343 3799999999999999998888889999999998665444888889999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCCC
Q 005135 288 KFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSK 367 (712)
Q Consensus 288 KFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s~ 367 (712)
|||++.+++.++++.+++.+ ++ +.|||||+|||+.+.+.+.++++++.+++.++++.|.++++||+||||+++|..
T Consensus 142 rfGi~~~e~~~~~~~~~~~~-l~-l~Gl~~H~gs~~~d~~~~~~~~~~~~~~~~~l~~~g~~~~~id~GGG~~~~y~~-- 217 (368)
T cd06810 142 KFGLSLSEARAALERAKELD-LR-LVGLHFHVGSQILDLETIVQALSDARELIEELVEMGFPLEMLDLGGGLGIPYDE-- 217 (368)
T ss_pred CcCCCHHHHHHHHHHHHhCC-Cc-EEEEEEcCCcCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCEEEeCCCcccccCC--
Confidence 99999999999999999988 77 999999999999999999999999999999999989999999999999999971
Q ss_pred CCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCcchhccccceEEEEEEEEEecCCCCCCCCcchhhHhhhc
Q 005135 368 SADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEAVSASVSRAAPVAMSPLGLQYLVEG 447 (712)
Q Consensus 368 ~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPGRalvA~agvLVt~Vi~vk~~~~~~~~~~~~~~~~lvdg 447 (712)
. ++++++|++.|...+++.+.. .+.++|++||||+|++++++||++|+++|...+
T Consensus 218 ~-------~~~~~~~~~~i~~~~~~~~~~--~~~~~l~~EpGr~l~~~ag~lv~~V~~~k~~~~---------------- 272 (368)
T cd06810 218 Q-------PLDFEEYAALINPLLKKYFPN--DPGVTLILEPGRYIVAQAGVLVTRVVAVKVNGG---------------- 272 (368)
T ss_pred C-------CCCHHHHHHHHHHHHHHHhcc--CCCcEEEEecChhhhhhceEEEEEEEEEEecCC----------------
Confidence 1 589999999999999988752 346799999999999999999999999997643
Q ss_pred hhhhHHHHHHHHHHHHHhhhhccCCCCccccccccccccccchhhhcCCcceeeecCCCCC-CCCeeeEeecccccCCCc
Q 005135 448 LTEDARSDYTKMTTAALRAMEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDE-RPGVRGVLSDLTCDSDGK 526 (712)
Q Consensus 448 ~~~~~~~~y~~~~~~~~~g~~~~~~~~~~~Y~~N~Svf~SlpD~w~i~q~fPI~pl~rl~e-~p~~~~~l~G~TCdS~D~ 526 (712)
..+|++|.|+++++++.|..++.||+.|+.+.++ .+..+++|+|+||++.|+
T Consensus 273 ---------------------------~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~C~~~D~ 325 (368)
T cd06810 273 ---------------------------RFFAVVDGGMNHSFRPALAYDAYHPITPLKAPGPDEPLVPATLAGPLCDSGDV 325 (368)
T ss_pred ---------------------------cEEEEEeCccccccccccccCCcceeEEeCCCcccCCceeEEEECCCCCCCcE
Confidence 1568999999999999998899999999976542 456889999999999999
Q ss_pred cccccCCCcccCCccccCCCCCCCcccEEEeecccchhccccCCCCCCCCCcEEEE
Q 005135 527 IDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 582 (712)
Q Consensus 527 I~~fi~~~~~LPl~~l~~G~~~~~~~d~L~~~~~GAYq~~m~s~fNlf~~p~~V~V 582 (712)
|.+ +..|| ++++| |+|+|+++|||+.+|+++||+|++|++|+|
T Consensus 326 ~~~----~~~lp--~l~~G-------D~l~~~~~GAY~~~~~~~fn~~~~p~~v~~ 368 (368)
T cd06810 326 IGR----DRLLP--ELEVG-------DLLVFEDMGAYGFSESSNFNSHPRPAEYLV 368 (368)
T ss_pred Eee----cccCC--CCCCC-------CEEEEcCCCCCchhhcccccCCCCCcEEeC
Confidence 876 45566 89999 999999999999999999999999999875
No 13
>cd06840 PLPDE_III_Bif_AspK_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bifunctional Aspartate Kinase/Diaminopimelate Decarboxylase. Bifunctional aspartate kinase/diaminopimelate decarboxylase (AspK/DapDC, EC 4.1.1.20/EC 2.7.2.4) typically exists in bacteria. These proteins contain an N-terminal AspK region and a C-terminal DapDC region, which contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, characteristic of fold type III PLP-dependent enzymes. Members of this subfamily have not been fully characterized. Based on their sequence, these proteins may catalyze both reactions catalyzed by AspK and DapDC. AspK catalyzes the phosphorylation of L-aspartate to produce 4-phospho-L-aspartate while DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine.
Probab=100.00 E-value=3.2e-61 Score=527.58 Aligned_cols=357 Identities=22% Similarity=0.249 Sum_probs=285.9
Q ss_pred CCCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHH
Q 005135 125 GLQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMS 204 (712)
Q Consensus 125 g~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~ 204 (712)
+..|||||+|++.|++|+++|++ +.. ..+++||+|||+++.|++.+.++| +|+||+|.+||++|++
T Consensus 9 ~~~tP~~v~d~~~l~~~~~~l~~-~~~---------~~~~~yAvKaN~~~~vl~~l~~~G----~g~dvaS~~El~~al~ 74 (368)
T cd06840 9 PDVGPCYVYDLETVRARARQVSA-LKA---------VDSLFYAIKANPHPDVLRTLEEAG----LGFECVSIGELDLVLK 74 (368)
T ss_pred CCCCCEEEecHHHHHHHHHHHHh-CCC---------CCeEEEEeccCCCHHHHHHHHHcC----CeEEEcCHHHHHHHHH
Confidence 36899999999999999999975 431 247999999999999999999999 6999999999999999
Q ss_pred h--cCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCC-ccc
Q 005135 205 C--LCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGH-FGS 281 (712)
Q Consensus 205 ~--G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~-~~~ 281 (712)
+ |+ +|++|+|+++.|++++|+.|++ +|+ .|++||++||++|.++++ ..+|+|||||.....++ -..
T Consensus 75 ~~~G~--~~~~Iif~gp~K~~~~l~~a~~---~gv--~i~~Ds~~El~~i~~~~~----~~~v~lRi~~~~~~~~~~~~~ 143 (368)
T cd06840 75 LFPDL--DPRRVLFTPNFAARSEYEQALE---LGV--NVTVDNLHPLREWPELFR----GREVILRIDPGQGEGHHKHVR 143 (368)
T ss_pred cccCC--CcceEEEcCCCCCHHHHHHHHH---CCC--EEEECCHHHHHHHHHhcc----cCCEEEEECCCCCCCCCCcee
Confidence 8 85 8999999999999999999987 555 579999999999998875 36899999997653332 345
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCc
Q 005135 282 TSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGI 361 (712)
Q Consensus 282 tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv 361 (712)
+++..||||++.+++.++++.+++.+ ++ +.|||||+|||+.+.+.|.++++.+.+ +.+.+.++++|||||||++
T Consensus 144 ~~~~~skFG~~~~~~~~~l~~~~~~~-l~-l~GlhfH~GS~~~~~~~~~~~~~~~~~----l~~~~~~~~~idiGGGf~~ 217 (368)
T cd06840 144 TGGPESKFGLDVDELDEARDLAKKAG-II-VIGLHAHSGSGVEDTDHWARHGDYLAS----LARHFPAVRILNVGGGLGI 217 (368)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHhCC-Cc-EEEEEEECCCCCCCHHHHHHHHHHHHH----HHHhcCCCCEEEecCcccC
Confidence 67788999999999999999999876 56 999999999999999988776654444 4444457999999999999
Q ss_pred CcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCcchhccccceEEEEEEEEEecCCCCCCCCcchh
Q 005135 362 DYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEAVSASVSRAAPVAMSPLGL 441 (712)
Q Consensus 362 ~Y~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPGRalvA~agvLVt~Vi~vk~~~~~~~~~~~~~~ 441 (712)
+|..... .+++++|++.|....+ . .+.++|++||||||||++|+||++|+++|+..+..+.
T Consensus 218 ~y~~~~~-------~~~~~~~~~~i~~~~~----~--~~~~~l~~EPGR~lva~ag~lvt~V~~vK~~~~~~~~------ 278 (368)
T cd06840 218 PEAPGGR-------PIDLDALDAALAAAKA----A--HPQYQLWMEPGRFIVAESGVLLARVTQIKHKDGVRFV------ 278 (368)
T ss_pred CCCCCCC-------CCCHHHHHHHHHHHHh----h--CCCcEEEEecCceeeecceEEEEEEEEEEecCCcEEE------
Confidence 9975432 4689998887665332 2 2457999999999999999999999999986542111
Q ss_pred hHhhhchhhhHHHHHHHHHHHHHhhhhccCCCCccccccccccccccchhhhcCCcceeeecCCCCCCCCeeeEeecccc
Q 005135 442 QYLVEGLTEDARSDYTKMTTAALRAMEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTC 521 (712)
Q Consensus 442 ~~lvdg~~~~~~~~y~~~~~~~~~g~~~~~~~~~~~Y~~N~Svf~SlpD~w~i~q~fPI~pl~rl~e~p~~~~~l~G~TC 521 (712)
++|+ |++.+.+ .++| ++.+++.++.+.++.++..++|+|+||
T Consensus 279 --~~d~----------------------G~~~l~~-----p~~~---------~~~~~~~~~~~~~~~~~~~~~v~Gp~C 320 (368)
T cd06840 279 --GLET----------------------GMNSLIR-----PALY---------GAYHEIVNLSRLDEPPAGNADVVGPIC 320 (368)
T ss_pred --EEeC----------------------chhcccc-----hhhh---------cccceeEecCCCCcCCcceEEEEeCCc
Confidence 1221 1211111 1111 233456666554444567899999999
Q ss_pred cCCCccccccCCCcccCCccccCCCCCCCcccEEEeecccchhccccCCCCCCCCCcEEEE
Q 005135 522 DSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 582 (712)
Q Consensus 522 dS~D~I~~fi~~~~~LPl~~l~~G~~~~~~~d~L~~~~~GAYq~~m~s~fNlf~~p~~V~V 582 (712)
+|.|++.+ +..|| ++++| |+|+|.++|||+.+|+++||++++|.+|.+
T Consensus 321 ~~~D~l~~----~~~lp--~l~~G-------D~l~~~~~GAY~~~~~s~fn~~~~~~~v~~ 368 (368)
T cd06840 321 ESGDVLGR----DRLLP--ETEEG-------DVILIANAGAYGFCMASTYNLREPAEEVVL 368 (368)
T ss_pred CCCCEEee----cccCC--CCCCC-------CEEEEecCCcchHhhhhhccCCCCCCEEeC
Confidence 99999876 44555 79999 999999999999999999999999999874
No 14
>TIGR01047 nspC carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus.
Probab=100.00 E-value=2e-60 Score=523.15 Aligned_cols=376 Identities=16% Similarity=0.123 Sum_probs=288.8
Q ss_pred CCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHh
Q 005135 126 LQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSC 205 (712)
Q Consensus 126 ~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~ 205 (712)
++||+||||++.|++|+++|+++|.. .+++++||+|||+++.|++.+.++| +|+||+|.+||++|+++
T Consensus 1 ~~tP~yvyd~~~i~~~~~~l~~~~~~--------~~~~i~YAvKAN~~~~il~~l~~~g----~G~D~aS~gEl~~al~a 68 (380)
T TIGR01047 1 IPTPAFVLEEEKLRKNLEILEHVQQQ--------SGAKVLLALKGFAFWGVFPILREYL----DGCTASGLWEAKLAKEE 68 (380)
T ss_pred CCCCEEEecHHHHHHHHHHHHHHHhh--------cCCEEEEEEcccCChHHHHHHHHHC----CcccccCHHHHHHHHHH
Confidence 58999999999999999999999864 2578999999999999999999999 69999999999999988
Q ss_pred cCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCC-CccccCC
Q 005135 206 LCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSG-HFGSTSG 284 (712)
Q Consensus 206 G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~-~~~~tgg 284 (712)
+ ++ ++|+.++.|++++|+.|++ .| +.|+|||++||++|.+++++.+..++|+|||||.....+ +...|++
T Consensus 69 -~--~~-~~i~~~~~k~~~el~~a~~---~g--~~i~idS~~el~~l~~~a~~~~~~~~i~lRinp~~~~~~~~~~~~~~ 139 (380)
T TIGR01047 69 -F--GK-EIHVYSPAYSEEDVPEIIP---LA--DHIIFNSLAQWARYRHLVEGKNSAVKLGLRINPEYSEVGTDLYNPCG 139 (380)
T ss_pred -C--CC-cEEEECCCCCHHHHHHHHH---cC--CEEEECCHHHHHHHHHHHHhcCCCceEEEEECCCCCCCCcccccCCC
Confidence 5 44 4566678899999999997 34 379999999999999999877777899999999865333 4556788
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcC
Q 005135 285 EKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYD 364 (712)
Q Consensus 285 ~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~ 364 (712)
..||||++.+++.+++ .++ +.|||||+||| .+.+.+.++++.+.++..+ .+.++++||||||||++|.
T Consensus 140 ~~sKFGi~~~~~~~~~-------~~~-i~GlH~HiGS~-~~~~~~~~~i~~~~~~~~~---~~~~~~~iDiGGGfgv~y~ 207 (380)
T TIGR01047 140 QFSRLGVQADHFEESL-------LDG-INGLHFHTLCE-KDADALERTLEVIEERFGE---YLPQMDWVNFGGGHHITKP 207 (380)
T ss_pred CCCCCCCCHHHHhHhH-------hhc-CcEEEEecCCC-CCHHHHHHHHHHHHHHHHH---hhCCCCEEEeCCCcCCCCC
Confidence 8999999999887653 134 78999999999 9998887777777665533 2358999999999999984
Q ss_pred CCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCcchhccccceEEEEEEEEEecCCCCCCCCcchhhHh
Q 005135 365 GSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEAVSASVSRAAPVAMSPLGLQYL 444 (712)
Q Consensus 365 ~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPGRalvA~agvLVt~Vi~vk~~~~~~~~~~~~~~~~l 444 (712)
. ++++++++.|.+.+. +.+ ++|++|||||+||++|+||++|+++|+. ++.+++.|.++
T Consensus 208 ~-----------~~~~~~~~~i~~~~~----~~~---~~li~EPGR~lva~ag~lv~~V~~~K~~-~~~~~~vD~g~--- 265 (380)
T TIGR01047 208 G-----------YDVEKLIAVIKAFAE----RHG---VQVILEPGEAIGWQTGFLVASVVDIVEN-EKKIAILDVSF--- 265 (380)
T ss_pred C-----------CCHHHHHHHHHHHHH----HhC---CEEEEeCchHHHhcCeeEEEEEEEEEEC-CeeEEEEecCh---
Confidence 2 578888876655543 333 4899999999999999999999999975 42222222221
Q ss_pred hhchhhhHHHHHHHHHHHHHhhhhccCCCCccccccccccccccchhhhcCCcceeeecCCCC--CCCCeeeEeeccccc
Q 005135 445 VEGLTEDARSDYTKMTTAALRAMEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLD--ERPGVRGVLSDLTCD 522 (712)
Q Consensus 445 vdg~~~~~~~~y~~~~~~~~~g~~~~~~~~~~~Y~~N~Svf~SlpD~w~i~q~fPI~pl~rl~--e~p~~~~~l~G~TCd 522 (712)
++.+. +.+..+. -|..| ++..++...++.. ..++..++|+|++|+
T Consensus 266 ----~~~~~----------------------~~~~~~~-----~p~~~--~~~~~~~~~~~~~~~~~~~~~~~v~G~~C~ 312 (380)
T TIGR01047 266 ----EAHMP----------------------DTLEMPY-----RPSVL--GASDPATRENEEISLKEGQFSYVLGGCTCL 312 (380)
T ss_pred ----HhcCh----------------------hhhccCC-----Ccccc--cCCCccccccccccccCCceeEEEEcCCCC
Confidence 11000 0000000 01111 1112333232211 124567999999999
Q ss_pred CCCccccccCCCcccCCccccCCCCCCCcccEEEeecccchhccccCCCCCCCCCcEEEEEecCCCCeEEEEEcCCCCCH
Q 005135 523 SDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSC 602 (712)
Q Consensus 523 S~D~I~~fi~~~~~LPl~~l~~G~~~~~~~d~L~~~~~GAYq~~m~s~fNlf~~p~~V~V~~~d~~g~~~i~r~~~g~t~ 602 (712)
|.|+|.+ ...+| ++++| |+|+|.++|||+++|+++||+|++|++|.++ ++|+++++| +.++
T Consensus 313 s~D~l~~----~~~lp--~l~~G-------D~l~~~~~GAY~~smss~fn~~~~p~~v~~~---~~g~~~lir---~~~~ 373 (380)
T TIGR01047 313 AGDVMGE----YAFDE--PLKVG-------DKLVFLDMIHYTMVKNTTFNGVKLPSLGCLR---ANGEFQKIR---TFGY 373 (380)
T ss_pred cccEEee----cccCC--CCCCC-------CEEEEcCcCChhhhccCCCCCCCCCcEEEEe---cCCcEEEEE---ecCh
Confidence 9999875 34444 79999 9999999999999999999999999999997 235688887 6899
Q ss_pred HHHHHh
Q 005135 603 GDVLRV 608 (712)
Q Consensus 603 ~dvl~~ 608 (712)
+|..++
T Consensus 374 ~~~~~~ 379 (380)
T TIGR01047 374 EDYKNR 379 (380)
T ss_pred HHhhhc
Confidence 998764
No 15
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-61 Score=510.65 Aligned_cols=396 Identities=23% Similarity=0.297 Sum_probs=330.6
Q ss_pred HHHHHHHhCCCCCCCCCCCCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCC
Q 005135 108 LLKIVKKVSDPKSVGGLGLQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQF 187 (712)
Q Consensus 108 l~el~~~~~~~~~~~~~g~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~ 187 (712)
+..++++..........+-..||||+|...|.++.++|+++++ +++|+||||||+++.|++.|+++|
T Consensus 36 ~r~~i~e~~~~~~~~~~~e~~aFfv~Dl~~I~Rkl~~w~~~Lp----------rV~PfYAVKCN~dp~vl~~La~lG--- 102 (448)
T KOG0622|consen 36 LRNLIEEGTLVAERMETGEKQAFFVADLGAIERKLEAWKKALP----------RVRPFYAVKCNSDPKVLRLLASLG--- 102 (448)
T ss_pred HHHHHHHhhhhhhhccccccCceEEecHHHHHHHHHHHHHhcc----------cCCCceeEEeCCCHHHHHHHHHcC---
Confidence 4555555422222223356899999999999999999999997 479999999999999999999999
Q ss_pred ccceEecCHHHHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEE
Q 005135 188 RFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGA 267 (712)
Q Consensus 188 ~~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgL 267 (712)
+|++|+|+.|+++++.+| ++|+||||+||+|+.++|++|.. .|+. +.++||..||.++.+.. ...++.|
T Consensus 103 -~gfdcaSk~E~~lvl~~g--v~P~riIyanpcK~~s~IkyAa~---~gV~-~~tfDne~el~kv~~~h----P~a~llL 171 (448)
T KOG0622|consen 103 -CGFDCASKNELDLVLSLG--VSPERIIYANPCKQVSQIKYAAK---HGVS-VMTFDNEEELEKVAKSH----PNANLLL 171 (448)
T ss_pred -ccceecChHHHHHHHhcC--CChHHeEecCCCccHHHHHHHHH---cCCe-EEeecCHHHHHHHHHhC----CCceEEE
Confidence 699999999999999999 59999999999999999999986 6777 68899999999986654 3578999
Q ss_pred EEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcC
Q 005135 268 RAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLG 347 (712)
Q Consensus 268 RVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G 347 (712)
||+++... +++....|||++.+++..+++.+|+++. + ++|+|||+||.+.+++.|++++..++.++++..++|
T Consensus 172 rIatdds~-----a~~~l~~KFG~~~~~~~~lLd~ak~l~l-n-vvGvsfHvGSgc~d~~~y~~Ai~dAr~vfd~g~e~G 244 (448)
T KOG0622|consen 172 RIATDDST-----ATCRLNLKFGCSLDNCRHLLDMAKELEL-N-VVGVSFHVGSGCTDLQAYRDAISDARNVFDMGAELG 244 (448)
T ss_pred EEccCCCc-----ccccccCccCCCHHHHHHHHHHHHHcCc-e-EEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 99987542 4677899999999999999999999975 7 999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCCCCcCcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCcchhccccceEEEEEEEEE
Q 005135 348 ANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEAVSAS 427 (712)
Q Consensus 348 ~~l~~IDIGGGlgv~Y~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPGRalvA~agvLVt~Vi~vk 427 (712)
+++.+|||||||+.++.. +.-+++.++.|..++..++++-++ +||+|||||+||.+.+|+++|+++|
T Consensus 245 f~m~~LdiGGGf~g~~~~----------~~~fe~i~~~In~ald~~Fp~~~v---~iiaEpGRf~VasafTLa~nViakk 311 (448)
T KOG0622|consen 245 FEMDILDIGGGFPGDEGH----------AVVFEEIADVINTALDLYFPSGGV---DIIAEPGRFFVASAFTLAVNVIAKK 311 (448)
T ss_pred ceEEEeecCCCCCCccch----------hhhhhhHHHHHHHHHHHhCCCCCc---eEEeccchheeechheeeeeeeeee
Confidence 999999999999987642 246899999999999999987555 8999999999999999999999999
Q ss_pred ecCCCCCCCCcchhhHhhhchhhhHHHHHHHHHHHHHhhhhccCCCCccccccccccccccchhhhcCCcceeeecC--C
Q 005135 428 VSRAAPVAMSPLGLQYLVEGLTEDARSDYTKMTTAALRAMEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIH--H 505 (712)
Q Consensus 428 ~~~~~~~~~~~~~~~~lvdg~~~~~~~~y~~~~~~~~~g~~~~~~~~~~~Y~~N~Svf~SlpD~w~i~q~fPI~pl~--r 505 (712)
....+.+.-.+. -.+..-.||+|+|||+||.+.... ...||--.+ .
T Consensus 312 ~v~~~~~~~d~~-------------------------------d~~~~~mYy~nDGVYGsfnciL~D-~~~~i~~~~~~~ 359 (448)
T KOG0622|consen 312 EVDAKKITSDDE-------------------------------DDEVTFMYYVNDGVYGSFNCILFD-HQHPIPLVVKDP 359 (448)
T ss_pred eccccccCcccc-------------------------------ccCceEEEEEccceeeeechhhhc-ccCCcccccCCC
Confidence 876521110000 011234699999999999976643 333432222 1
Q ss_pred CCCCCCeeeEeecccccCCCccccccCCCcccCCccccCCCCCCCcccEEEeecccchhccccCCCCCCCCCcEEEEEec
Q 005135 506 LDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQS 585 (712)
Q Consensus 506 l~e~p~~~~~l~G~TCdS~D~I~~fi~~~~~LPl~~l~~G~~~~~~~d~L~~~~~GAYq~~m~s~fNlf~~p~~V~V~~~ 585 (712)
..++|....+|||||||+-|+|.+ +..|| .+.+| |||.|.++|||++.++|.||+|.+|+++++. +
T Consensus 360 ~e~e~~~~ssIwGPtcD~lD~i~~----~~~lp--~l~vG-------dwLvf~~mGAYT~~~aS~fNgf~~p~~~y~~-s 425 (448)
T KOG0622|consen 360 SEEEPLYKSSIWGPTCDGLDVIAE----DCLLP--QLNVG-------DWLVFENMGAYTMSAASTFNGFQRPKIYYVM-S 425 (448)
T ss_pred ccccceeeeeeecCCcchHHHHHh----hccCC--CCCcc-------CeEEEccCCccccccccccCCCCCCceEEEe-c
Confidence 224457789999999999999987 66777 79999 9999999999999999999999999999998 3
Q ss_pred CCCCeEEEEE
Q 005135 586 DGPHSFAVTR 595 (712)
Q Consensus 586 d~~g~~~i~r 595 (712)
+ +.|+.+|
T Consensus 426 ~--~~~e~~r 433 (448)
T KOG0622|consen 426 D--GDWEKIR 433 (448)
T ss_pred c--ccHHHhh
Confidence 4 4566666
No 16
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase. This subfamily is composed of Bacillus circulans BtrK decarboxylase and similar proteins. These proteins are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases, eukaryotic ornithine decarboxylases and diaminopimelate decarboxylases. BtrK is presumed to function as a PLP-dependent decarboxylase involved in the biosynthesis of the aminoglycoside antibiotic butirosin. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity.
Probab=100.00 E-value=1.7e-60 Score=523.27 Aligned_cols=376 Identities=20% Similarity=0.309 Sum_probs=311.5
Q ss_pred CCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHh
Q 005135 126 LQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSC 205 (712)
Q Consensus 126 ~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~ 205 (712)
++||+||+|++.|++|+++|+++|++ +.+++|++|||+++.|++.+.+.| .|+||+|.+|+++++++
T Consensus 5 ~~tP~~v~d~~~l~~n~~~l~~~~~~---------~~~~~yavKan~~~~v~~~l~~~g----~g~~vaS~~E~~~~~~~ 71 (382)
T cd06839 5 YGTPFYVYDRDRVRERYAALRAALPP---------AIEIYYSLKANPNPALVAHLRQLG----DGAEVASAGELALALEA 71 (382)
T ss_pred cCCCEEEEeHHHHHHHHHHHHHhcCC---------CcEEEEEeccCCCHHHHHHHHHcC----CCEEEeCHHHHHHHHHc
Confidence 99999999999999999999999863 368999999999999999999988 59999999999999999
Q ss_pred cCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCC
Q 005135 206 LCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGE 285 (712)
Q Consensus 206 G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~ 285 (712)
|+ ++++|++.++.|++++|+.|++ .|+ ..++|||++||++|.+++++.+.+++|+||||+.....+....+++.
T Consensus 72 G~--~~~~I~~~~~~k~~~~l~~a~~---~g~-~~i~vds~~el~~l~~~a~~~~~~~~v~lRin~~~~~~~~g~~~~~~ 145 (382)
T cd06839 72 GV--PPEKILFAGPGKSDAELRRAIE---AGI-GTINVESLEELERIDALAEEHGVVARVALRINPDFELKGSGMKMGGG 145 (382)
T ss_pred CC--CHHHEEEeCCCCCHHHHHHHHH---CCC-CEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCCCCCccccCCC
Confidence 95 7789999999999999999987 343 37999999999999999988888899999999875433333456778
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHH-cCCCCcEEEEcCCCCcCcC
Q 005135 286 KGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVR-LGANMQVIDIGGGLGIDYD 364 (712)
Q Consensus 286 ~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~-~G~~l~~IDIGGGlgv~Y~ 364 (712)
.+|||++.+++.++++.+++...++ +.|||||+|||+.+.+.+.++++++.+++.++.+ .|.++++||+|||||++|.
T Consensus 146 ~sKfG~~~~~~~~~~~~~~~~~~l~-l~Glh~h~gs~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~idiGGG~~~~~~ 224 (382)
T cd06839 146 PSQFGIDVEELPAVLARIAALPNLR-FVGLHIYPGTQILDADALIEAFRQTLALALRLAEELGLPLEFLDLGGGFGIPYF 224 (382)
T ss_pred CCCcCCCHHHHHHHHHHHHhCCCCc-EEEEEEecCcCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEecCccccccC
Confidence 8999999999999999998867788 9999999999999999999999999999999875 6899999999999999997
Q ss_pred CCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCcchhccccceEEEEEEEEEecCCCCCCCCcchhhHh
Q 005135 365 GSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEAVSASVSRAAPVAMSPLGLQYL 444 (712)
Q Consensus 365 ~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPGRalvA~agvLVt~Vi~vk~~~~~~~~~~~~~~~~l 444 (712)
.++. .+++++|+..|...++++.. ..++++|++|||||||++||+||++|+++|+..+.... +
T Consensus 225 ~~~~-------~~~~~~~~~~i~~~l~~~~~--~~~~~~l~~EPGR~l~~~ag~lv~~V~~~k~~~~~~~~--------~ 287 (382)
T cd06839 225 PGET-------PLDLEALGAALAALLAELGD--RLPGTRVVLELGRYLVGEAGVYVTRVLDRKVSRGETFL--------V 287 (382)
T ss_pred CCCC-------CCCHHHHHHHHHHHHHHHhc--CCCCceEEEecChhhhhhceEEEEEEEEEeecCCCEEE--------E
Confidence 5432 47999999999999988732 34678999999999999999999999999976552222 2
Q ss_pred hhchhhhHHHHHHHHHHHHHhhhhccCCCCccccccccccccccchhhhcCCcceeeecCCCCCCCCeeeEeecccccCC
Q 005135 445 VEGLTEDARSDYTKMTTAALRAMEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSD 524 (712)
Q Consensus 445 vdg~~~~~~~~y~~~~~~~~~g~~~~~~~~~~~Y~~N~Svf~SlpD~w~i~q~fPI~pl~rl~e~p~~~~~l~G~TCdS~ 524 (712)
+|+ |++.+.+.+. ++.+. .++.||+.+....++.+...++|+|+||++.
T Consensus 288 ~D~----------------------g~~~~~~~~~-------~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~G~~C~~~ 336 (382)
T cd06839 288 TDG----------------------GMHHHLAASG-------NFGQV--LRRNYPLAILNRMGGEERETVTVVGPLCTPL 336 (382)
T ss_pred EEC----------------------Ccccchhhhc-------ccccc--ccccceeEEccCCCCCCceEEEEEeCCCCCC
Confidence 222 1111111111 11111 2345687766543334567899999999999
Q ss_pred CccccccCCCcccCCccccCCCCCCCcccEEEeecccchhccccC-CCCCCCCCcEEEE
Q 005135 525 GKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGG-VHNLFGGPSVVRV 582 (712)
Q Consensus 525 D~I~~fi~~~~~LPl~~l~~G~~~~~~~d~L~~~~~GAYq~~m~s-~fNlf~~p~~V~V 582 (712)
|+|.+ +..|| ++++| |+|+|.++|||+++|++ +||+|++|.+|+|
T Consensus 337 D~~~~----~~~lp--~l~~G-------D~l~~~~~GAY~~~~~~~~fn~~~~p~~~~~ 382 (382)
T cd06839 337 DLLGR----NVELP--PLEPG-------DLVAVLQSGAYGLSASPLAFLSHPAPAEVLV 382 (382)
T ss_pred CEEee----cccCC--CCCCC-------CEEEEecCCCcccccChhhHhCCCCCCEEeC
Confidence 99876 55666 78998 99999999999999995 9999999999975
No 17
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=100.00 E-value=3.5e-60 Score=518.94 Aligned_cols=372 Identities=25% Similarity=0.357 Sum_probs=315.9
Q ss_pred CCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHh
Q 005135 126 LQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSC 205 (712)
Q Consensus 126 ~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~ 205 (712)
++||+||+|++.|++|+++|+++|++ .+++++|++|||+++.|++.+.+.| .|+||+|.+|+++++++
T Consensus 1 ~~tP~~v~d~~~l~~n~~~l~~~~~~--------~~~~~~yavKaN~~~~v~~~l~~~G----~g~~vaS~~E~~~~~~~ 68 (373)
T cd06828 1 YGTPLYVYDEATIRENYRRLKEAFSG--------PGFKICYAVKANSNLAILKLLAEEG----LGADVVSGGELYRALKA 68 (373)
T ss_pred CCCCEEEEcHHHHHHHHHHHHHhhCC--------CCcEEEEEehhCCCHHHHHHHHHcC----CcEEEeCHHHHHHHHHc
Confidence 57999999999999999999999973 2579999999999999999999999 59999999999999999
Q ss_pred cCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCC-CccccCC
Q 005135 206 LCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSG-HFGSTSG 284 (712)
Q Consensus 206 G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~-~~~~tgg 284 (712)
|+ ++++|++.++.|+.++|+.|++ .|+ ..++|||++||++|.+++++.+.+.+|+|||++...... ...++++
T Consensus 69 G~--~~~~I~~~~p~k~~~~l~~a~~---~g~-~~~~ids~~el~~l~~~a~~~~~~~~v~lRv~~~~~~~~~~~~~~g~ 142 (373)
T cd06828 69 GF--PPERIVFTGNGKSDEELELALE---LGI-LRINVDSLSELERLGEIAPELGKGAPVALRVNPGVDAGTHPYISTGG 142 (373)
T ss_pred CC--CcccEEEeCCCCCHHHHHHHHH---cCC-eEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCCCCCCCeecCC
Confidence 95 7788999999999999999987 343 479999999999999999988888999999999765433 3567788
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcC
Q 005135 285 EKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYD 364 (712)
Q Consensus 285 ~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~ 364 (712)
..+|||++.+++.++++++++...++ +.|||||+|||+.+.+.+.++++++.+++.++++.|.++++||+|||||++|.
T Consensus 143 ~~srfGi~~~e~~~~~~~~~~~~~l~-l~Gi~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~idiGGG~~~~~~ 221 (373)
T cd06828 143 KDSKFGIPLEQALEAYRRAKELPGLK-LVGLHCHIGSQILDLEPFVEAAEKLLDLAAELRELGIDLEFLDLGGGLGIPYR 221 (373)
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCc-EEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCEEEeCCCCCcccC
Confidence 88999999999999999999877788 99999999999999999999999999999999988999999999999999997
Q ss_pred CCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCcchhccccceEEEEEEEEEecCCCCCCCCcchhhHh
Q 005135 365 GSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEAVSASVSRAAPVAMSPLGLQYL 444 (712)
Q Consensus 365 ~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPGRalvA~agvLVt~Vi~vk~~~~~~~~~~~~~~~~l 444 (712)
..+. ++++++|++.|...+++++. ..+.++|++||||++|+++|+||++|+++|+..+.
T Consensus 222 ~~~~-------~~~~~~~~~~i~~~~~~~~~--~~~~~~l~~EpGR~lv~~~g~lv~~V~~~k~~~~~------------ 280 (373)
T cd06828 222 DEDE-------PLDIEEYAEAIAEALKELCE--GGPDLKLIIEPGRYIVANAGVLLTRVGYVKETGGK------------ 280 (373)
T ss_pred CCCC-------CCCHHHHHHHHHHHHHHHHc--cCCCceEEEecCcceeecceEEEEEEEEEEecCCC------------
Confidence 5432 57999999999999999886 34578999999999999999999999999986541
Q ss_pred hhchhhhHHHHHHHHHHHHHhhhhccCCCCccccccccccccccchhhhcCCcceeeecCCCCCCCCeeeEeecccccCC
Q 005135 445 VEGLTEDARSDYTKMTTAALRAMEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSD 524 (712)
Q Consensus 445 vdg~~~~~~~~y~~~~~~~~~g~~~~~~~~~~~Y~~N~Svf~SlpD~w~i~q~fPI~pl~rl~e~p~~~~~l~G~TCdS~ 524 (712)
.++++|.|++..+... ..++.+|+.++++....+..+++|+|+||++.
T Consensus 281 -------------------------------~~~~~d~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~G~~C~~~ 328 (373)
T cd06828 281 -------------------------------TFVGVDAGMNDLIRPA-LYGAYHEIVPVNKPGEGETEKVDVVGPICESG 328 (373)
T ss_pred -------------------------------EEEEEeCCcccchhhH-hcCCccceEEccCCCCCCceEEEEEeCCCCCC
Confidence 1222332322211111 11234466666543214567899999999999
Q ss_pred CccccccCCCcccCCccccCCCCCCCcccEEEeecccchhccccCCCCCCCCCcEEEE
Q 005135 525 GKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 582 (712)
Q Consensus 525 D~I~~fi~~~~~LPl~~l~~G~~~~~~~d~L~~~~~GAYq~~m~s~fNlf~~p~~V~V 582 (712)
|+|.+ +..|| ++++| |+|+|.++|||+++++++||+|++|.+|+|
T Consensus 329 D~l~~----~~~lp--~l~~G-------D~l~~~~~GAY~~~~~~~f~~~~~p~~v~~ 373 (373)
T cd06828 329 DVFAK----DRELP--EVEEG-------DLLAIHDAGAYGYSMSSNYNSRPRPAEVLV 373 (373)
T ss_pred CEEee----cccCC--CCCCC-------CEEEEeCCCcchHHHHHHhhCCCCCcEEeC
Confidence 99876 45666 89999 999999999999999999999999999875
No 18
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated. The sequences in this family contain the pyridoxal binding domain (pfam02784) and C-terminal sheet domain (pfam00278) of a family of Pyridoxal-dependent decarboxylases. Characterized enzymes in this family decarboxylate substrates such as ornithine, diaminopimelate and arginine. The genes of the family modeled here, with the exception of those observed in certain Burkholderia species, are all found in the context of exopolysaccharide biosynthesis loci containing the exosortase/PEP-CTERM protein sorting system. More specifically, these are characteristic of the type 1 exosortase system represented by the Genome Property GenProp0652. The substrate of these enzymes may be a precursor of the carrier or linker which is hypothesized to release the PEP-CTERM protein from the exosortase enzyme. These enzymes are apparently most closely related to the diaminopimelate decarboxylase modeled by TIGR01048
Probab=100.00 E-value=5.5e-60 Score=522.55 Aligned_cols=384 Identities=19% Similarity=0.259 Sum_probs=315.7
Q ss_pred CcCHHHHHHHhCCCCCCCCCCCC-CcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHc
Q 005135 105 EIDLLKIVKKVSDPKSVGGLGLQ-LPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKF 183 (712)
Q Consensus 105 ~i~l~el~~~~~~~~~~~~~g~~-tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~ 183 (712)
+.++.+|+++ ++ ||+||+|++.|++|+++|+++|+. ..+++|++|||+++.|++.+.+.
T Consensus 12 ~~~~~~l~~~-----------~g~tP~~v~d~~~l~~n~~~l~~~~~~---------~~~i~yavKaN~~~~vl~~l~~~ 71 (398)
T TIGR03099 12 GIPLTELAAR-----------AGGTPFYAYDRGLVSERVAALRKALPE---------ELAIHYAVKANPMPALLAHMAPL 71 (398)
T ss_pred CccHHHHHHH-----------hCCCCEEEEeHHHHHHHHHHHHHhccc---------cCcEEEEeccCCCHHHHHHHHHc
Confidence 4579999999 89 999999999999999999999863 36899999999999999999987
Q ss_pred CCCCccceEecCHHHHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCc
Q 005135 184 GSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRP 263 (712)
Q Consensus 184 G~~~~~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~ 263 (712)
| .|+||+|.+|+++++++|+ ++++|++.++.|+.++|+.|++ .| +.++|||++||++|.+++++.+.++
T Consensus 72 g----~g~dvaS~~E~~~~~~~G~--~~~~I~~~gp~k~~~~l~~a~~---~g--v~i~vDs~~el~~l~~~a~~~~~~~ 140 (398)
T TIGR03099 72 V----DGFDVASAGELAVALDTGY--DPGCISFAGPGKTDAELRRALA---AG--VLINVESLRELNRLAALSEALGLRA 140 (398)
T ss_pred C----CcEEEeCHHHHHHHHHcCC--ChhHEEEeCCCCCHHHHHHHHh---CC--CEEEECCHHHHHHHHHHHHhcCCCC
Confidence 7 5999999999999999996 6778999999999999999986 44 4799999999999999998888888
Q ss_pred eEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHH
Q 005135 264 VIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCEL 343 (712)
Q Consensus 264 ~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L 343 (712)
+|+||||+.....+....+++..+|||++.+++.++++.+++. .++ +.|||||+|||+.+.+.+.++++++.+.+.++
T Consensus 141 ~v~LRin~~~~~~~~~~~~~~~~srFGi~~~e~~~~~~~~~~~-~l~-l~Glh~h~gs~~~~~~~~~~~~~~~~~~~~~~ 218 (398)
T TIGR03099 141 RVAVRVNPDFELKGSGMKMGGGAKQFGIDAEQVPAALAFIKAA-DLD-FQGFHIFAGSQNLNAEAIIEAQAKTLALALRL 218 (398)
T ss_pred cEEEEECCCCCCCCcccccCCCCCcCCCCHHHHHHHHHHHHhC-CCe-EEEEEecccccCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999875433333457778899999999999999999988 467 99999999999999998988988888766655
Q ss_pred H-HcCCCCcEEEEcCCCCcCcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCcchhccccceEEEE
Q 005135 344 V-RLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFE 422 (712)
Q Consensus 344 ~-~~G~~l~~IDIGGGlgv~Y~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPGRalvA~agvLVt~ 422 (712)
. +.|.++++||+|||||++|..+.. .+++++++..|...++++++. .+.++|++||||||||++|+||++
T Consensus 219 ~~~~g~~~~~idiGGG~~v~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~--~~~~~l~~EPGR~lva~ag~lv~~ 289 (398)
T TIGR03099 219 AESAPAPVRVINIGGGFGIPYFPGNP-------PLDLAPVGAALAALFARLRDA--LPEVEILLELGRYLVGEAGIYVCR 289 (398)
T ss_pred HHHhCCCCCEEEeCCcccCCCCCCCC-------CCCHHHHHHHHHHHHHHHhhc--CCCCEEEEecChheeccceEEEEE
Confidence 4 468999999999999999975432 478999999999999887654 356799999999999999999999
Q ss_pred EEEEEecCCCCCCCCcchhhHhhhchhhhHHHHHHHHHHHHHhhhhccCCCCccccccccccccccchhhhcCCcceeee
Q 005135 423 AVSASVSRAAPVAMSPLGLQYLVEGLTEDARSDYTKMTTAALRAMEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVP 502 (712)
Q Consensus 423 Vi~vk~~~~~~~~~~~~~~~~lvdg~~~~~~~~y~~~~~~~~~g~~~~~~~~~~~Y~~N~Svf~SlpD~w~i~q~fPI~p 502 (712)
|+++|...+.... ++|+ |++.+.+++ +++.+.| ...+|+..
T Consensus 290 V~~~k~~~~~~~~--------~~d~----------------------g~~~~~~~~-------~~~~~~~--~~~~~~~~ 330 (398)
T TIGR03099 290 VIDRKISRGETFL--------VTDG----------------------GLHHHLSAS-------GNFGQVI--RRNYPVVI 330 (398)
T ss_pred EEEEEecCCcEEE--------EEcC----------------------Ccccccccc-------ccccchh--ccCceeEE
Confidence 9999976542121 2332 222222211 1111111 23467776
Q ss_pred cCCCCCCCCeeeEeecccccCCCccccccCCCcccCCccccCCCCCCCcccEEEeecccchhcccc-CCCCCCCCCcEEE
Q 005135 503 IHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALG-GVHNLFGGPSVVR 581 (712)
Q Consensus 503 l~rl~e~p~~~~~l~G~TCdS~D~I~~fi~~~~~LPl~~l~~G~~~~~~~d~L~~~~~GAYq~~m~-s~fNlf~~p~~V~ 581 (712)
..+.++....+++|+|+||+|.|+|.+ +..|| ++++| |+|+|.++|||+.+|+ ++||+|++|.+|+
T Consensus 331 ~~~~~~~~~~~~~i~G~~C~~~D~~~~----~~~lp--~~~~G-------D~l~~~~~GAY~~~~s~~~fn~~~~~~~v~ 397 (398)
T TIGR03099 331 GNRIGGAVREIASIVGPLCTPLDLLAE----KGTLP--VAEPG-------DLVVIFQSGAYGASASPLAFLGHPEAVELL 397 (398)
T ss_pred ccCCCCCCceEEEEEeCCCCCCCEEee----cCcCC--CCCCC-------CEEEEcCCCCcchhhChHhhhCCCCCCEEe
Confidence 544333346789999999999999876 55666 79999 9999999999999999 5999999999997
Q ss_pred E
Q 005135 582 V 582 (712)
Q Consensus 582 V 582 (712)
+
T Consensus 398 ~ 398 (398)
T TIGR03099 398 V 398 (398)
T ss_pred C
Confidence 4
No 19
>cd06841 PLPDE_III_MccE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme MccE. This subfamily is composed of uncharacterized proteins with similarity to Escherichia coli MccE, a hypothetical protein that is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Most members of this subfamily share the same domain architecture as ODC and DapDC. A few members, including Escherichia coli MccE, contain an additional acetyltransferase domain at the C-terminus.
Probab=100.00 E-value=1.1e-59 Score=517.17 Aligned_cols=368 Identities=20% Similarity=0.232 Sum_probs=304.5
Q ss_pred CCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHh
Q 005135 126 LQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSC 205 (712)
Q Consensus 126 ~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~ 205 (712)
++||+||+|++.|++|+++|+++|++. .++++++|+||||+++.|++.+.+.| +|+||+|.+|+++++++
T Consensus 5 ~~tP~~v~d~~~l~~n~~~l~~~~~~~------~~~~~i~yavKaN~~~~vl~~l~~~g----~~~dvaS~~E~~~~~~~ 74 (379)
T cd06841 5 YGSPFFVFDEDALRENYRELLGAFKKR------YPNVVIAYSYKTNYLPAICKILHEEG----GYAEVVSAMEYELALKL 74 (379)
T ss_pred cCCCeEEEeHHHHHHHHHHHHHHHhhc------CCCeEEEEEehhcccHHHHHHHHHcC----CeEEEeCHHHHHHHHHc
Confidence 899999999999999999999999753 23579999999999999999999999 68999999999999999
Q ss_pred cCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCC
Q 005135 206 LCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGE 285 (712)
Q Consensus 206 G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~ 285 (712)
|+ ++++|+++++.|++++|+.|++ .| +.++|||++||++|.+++++.+++++|+|||++.... +.
T Consensus 75 G~--~~~~Ii~~g~~k~~~~l~~a~~---~g--~~i~ids~~el~~l~~~~~~~~~~~~v~lRv~~~~g~--------~~ 139 (379)
T cd06841 75 GV--PGKRIIFNGPYKSKEELEKALE---EG--ALINIDSFDELERILEIAKELGRVAKVGIRLNMNYGN--------NV 139 (379)
T ss_pred CC--ChHHEEEECCCCCHHHHHHHHH---CC--CEEEECCHHHHHHHHHHHHhcCCcceEEEEECCCCCC--------CC
Confidence 95 7788999999999999999987 34 4799999999999999998888889999999985431 14
Q ss_pred CCCCCCCHHHHHHHHHHHHHc---CCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcC
Q 005135 286 KGKFGLTTTQILRVVKKLEVA---EMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGID 362 (712)
Q Consensus 286 ~SKFGl~~~e~~~~l~~l~~~---~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~ 362 (712)
.+|||++.+|+.++++.+++. +.++ +.|||||+|||+.+++.+.++++++.+++.++ .|.++++||||||||++
T Consensus 140 ~~rfGi~~~e~~~~~~~~~~~~~~~~l~-~~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~idiGGG~~~~ 216 (379)
T cd06841 140 WSRFGFDIEENGEALAALKKIQESKNLS-LVGLHCHVGSNILNPEAYSAAAKKLIELLDRL--FGLELEYLDLGGGFPAK 216 (379)
T ss_pred CCCCCCchhhhHHHHHHHHHhhcCCCee-EEEEEecCCCccCChHHHHHHHHHHHHHHHHh--cCCCCCEEEeCCCcCcC
Confidence 799999998886666665544 6677 99999999999999999999999999999888 69999999999999999
Q ss_pred cCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCcchhccccceEEEEEEEEEecCCCCCCCCcchhh
Q 005135 363 YDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEAVSASVSRAAPVAMSPLGLQ 442 (712)
Q Consensus 363 Y~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPGRalvA~agvLVt~Vi~vk~~~~~~~~~~~~~~~ 442 (712)
|.....+. +.+.++++++|++.|...++++|+ .+.+.++|++||||||||++|+|||+|+++|...+. +
T Consensus 217 y~~~~~~~-~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~l~~EpGR~lva~ag~lvt~V~~~k~~~~~---------~ 285 (379)
T cd06841 217 TPLSLAYP-QEDTVPDPEDYAEAIASTLKEYYA-NKENKPKLILEPGRALVDDAGYLLGRVVAVKNRYGR---------N 285 (379)
T ss_pred cCcccccc-ccCCCCCHHHHHHHHHHHHHHHhh-cCCCCCEEEEecCcceeccceEEEEEEEEEEEcCCc---------E
Confidence 97532110 112368999999999999999986 345678999999999999999999999999975442 1
Q ss_pred HhhhchhhhHHHHHHHHHHHHHhhhhccCCCCccccccccccccccchhhhcCCcceeeecCCCCC-CCCeeeEeecccc
Q 005135 443 YLVEGLTEDARSDYTKMTTAALRAMEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDE-RPGVRGVLSDLTC 521 (712)
Q Consensus 443 ~lvdg~~~~~~~~y~~~~~~~~~g~~~~~~~~~~~Y~~N~Svf~SlpD~w~i~q~fPI~pl~rl~e-~p~~~~~l~G~TC 521 (712)
++.+|.|++ .+++.| +..+|+.++...++ .+...++|+|+||
T Consensus 286 ----------------------------------~~~~d~g~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~G~~C 328 (379)
T cd06841 286 ----------------------------------IAVTDAGIN-NIPTIF--WYHHPILVLRPGKEDPTSKNYDVYGFNC 328 (379)
T ss_pred ----------------------------------EEEEeCCcc-cCcCcc--cCCceEEEeccCCCCCCcceEEEECCCc
Confidence 222333322 122222 23457766643221 3467899999999
Q ss_pred cCCCccccccCCCcccCCccccCCCCCCCcccEEEeecccchhccccCCCCCCCCCcEEEEE
Q 005135 522 DSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVL 583 (712)
Q Consensus 522 dS~D~I~~fi~~~~~LPl~~l~~G~~~~~~~d~L~~~~~GAYq~~m~s~fNlf~~p~~V~V~ 583 (712)
++.|+|.+ +..|| ++++| |+|+|+++|||+++|+++| .+++|++|+++
T Consensus 329 ~~~D~~~~----~~~lp--~l~~G-------D~l~~~~~GAY~~~~s~~f-~~~~p~~v~~~ 376 (379)
T cd06841 329 MESDVLFP----NVPLP--PLNVG-------DILAIRNVGAYNMTQSNQF-IRPRPAVYLID 376 (379)
T ss_pred CCCCEEee----CCcCC--CCCCC-------CEEEEeCCCCCChhhCccc-cCCCCcEEEEe
Confidence 99999876 55666 79999 9999999999999999999 58999999997
No 20
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE. This subfamily is composed of PvsE from Vibrio parahaemolyticus and similar proteins. PvsE is a vibrioferrin biosynthesis protein which is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. It has been suggested that PvsE may be involved in the biosynthesis of the polycarboxylate siderophore vibrioferrin. It may catalyze the decarboxylation of serine to yield ethanolamine. PvsE may require homodimer formation and the presence of the PLP cofactor for activity.
Probab=100.00 E-value=4.2e-59 Score=512.16 Aligned_cols=367 Identities=17% Similarity=0.241 Sum_probs=300.7
Q ss_pred CcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHhcC
Q 005135 128 LPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLC 207 (712)
Q Consensus 128 tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~G~ 207 (712)
.|+||+|++.|++|+++|+++++. +.+++|++|||+++.|++.+.+.| .|+||+|.+|+++++++|
T Consensus 2 ~~~yv~d~~~l~~N~~~l~~~~~~---------~~~i~yavKaN~~~~vl~~l~~~g----~g~dvaS~~E~~~~~~~~- 67 (377)
T cd06843 2 LCAYVYDLAALRAHARALRASLPP---------GCELFYAIKANSDPPILRALAPHV----DGFEVASGGEIAHVRAAV- 67 (377)
T ss_pred eEEEEEcHHHHHHHHHHHHHhcCC---------CCeEEEEeccCCCHHHHHHHHHcC----CcEEEeCHHHHHHHHhcC-
Confidence 599999999999999999998862 468999999999999999998877 599999999999999986
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCC-CCCCccccCCCC
Q 005135 208 KGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTK-HSGHFGSTSGEK 286 (712)
Q Consensus 208 ~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~-~~~~~~~tgg~~ 286 (712)
++++|++.++.|++++|+.|++ .|+. .|+|||++||++|.+++++.+.+.+|+|||++... .++.+..+++..
T Consensus 68 --~~~~I~~~gp~k~~~~l~~a~~---~gi~-~i~vds~~el~~l~~~a~~~~~~~~v~lRi~~~~~~~~~~~~~~~~~~ 141 (377)
T cd06843 68 --PDAPLIFGGPGKTDSELAQALA---QGVE-RIHVESELELRRLNAVARRAGRTAPVLLRVNLALPDLPSSTLTMGGQP 141 (377)
T ss_pred --CCCeEEEeCCCCCHHHHHHHHH---cCCC-EEEeCCHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCCcceecCCCC
Confidence 4678999999999999999987 4554 57899999999999999888888999999999765 445566788899
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHH-cCCCCcEEEEcCCCCcCcCC
Q 005135 287 GKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVR-LGANMQVIDIGGGLGIDYDG 365 (712)
Q Consensus 287 SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~-~G~~l~~IDIGGGlgv~Y~~ 365 (712)
||||++.+++.++++.+++.+.++ +.|||||+|||+.+.+.|.++++.+.+++.++.+ .|+++++||||||||++|..
T Consensus 142 srfG~~~~~~~~~~~~~~~~~~l~-~~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~idiGGGf~~~y~~ 220 (377)
T cd06843 142 TPFGIDEADLPDALELLRDLPNIR-LRGFHFHLMSHNLDAAAHLALVKAYLETARQWAAEHGLDLDVVNVGGGIGVNYAD 220 (377)
T ss_pred CCCCcCHHHHHHHHHHHHhCCCcc-EEEEEEEcCcCcCChHHHHHHHHHHHHHHHHHHHHhCCCCcEEEecCccccccCC
Confidence 999999999999999999887788 9999999999999999999999999999888764 69999999999999999975
Q ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCcchhccccceEEEEEEEEEecCCCCCCCCcchhhHhh
Q 005135 366 SKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEAVSASVSRAAPVAMSPLGLQYLV 445 (712)
Q Consensus 366 s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPGRalvA~agvLVt~Vi~vk~~~~~~~~~~~~~~~~lv 445 (712)
.+. .+++++|++.|.+.++++ . +.++|++||||||||+||+|||+|+++|...+.... ++
T Consensus 221 ~~~-------~~~~~~~~~~i~~~~~~~----~-~~~~l~~EpGR~lva~ag~lv~~V~~~k~~~~~~~~--------~~ 280 (377)
T cd06843 221 PEE-------QFDWAGFCEGLDQLLAEY----E-PGLTLRFECGRYISAYCGYYVTEVLDLKRSHGEWFA--------VL 280 (377)
T ss_pred CCC-------CCCHHHHHHHHHHHHHhc----C-CCCEEEEccChhhhcCceEEEEEEEEEeecCCcEEE--------EE
Confidence 432 478999999887777653 2 457999999999999999999999999986542222 23
Q ss_pred hchhhhHHHHHHHHHHHHHhhhhccCCCCccccccccccccccchhhhcCCcceeeecCCC------CCCCCeeeEeecc
Q 005135 446 EGLTEDARSDYTKMTTAALRAMEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHL------DERPGVRGVLSDL 519 (712)
Q Consensus 446 dg~~~~~~~~y~~~~~~~~~g~~~~~~~~~~~Y~~N~Svf~SlpD~w~i~q~fPI~pl~rl------~e~p~~~~~l~G~ 519 (712)
|+ |++.+. .|..|...+.+.+++.... .......++|+|+
T Consensus 281 d~----------------------g~~~~~------------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~ 326 (377)
T cd06843 281 RG----------------------GTHHFR------------LPAAWGHNHPFSVLPVEEWPYPWPRPSVRDTPVTLVGQ 326 (377)
T ss_pred eC----------------------cccccc------------chHHhcCCCceEeccccccccccccccCCceEEEEEeC
Confidence 33 222111 1222221111122222111 1123467999999
Q ss_pred cccCCCccccccCCCcccCCccccCCCCCCCcccEEEeecccchhccccC-CCCCCCCCcEEEE
Q 005135 520 TCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGG-VHNLFGGPSVVRV 582 (712)
Q Consensus 520 TCdS~D~I~~fi~~~~~LPl~~l~~G~~~~~~~d~L~~~~~GAYq~~m~s-~fNlf~~p~~V~V 582 (712)
||+|.|+|.+ +..|| ++++| |+|+|+++|||+.+|++ +||+|++|.+|++
T Consensus 327 ~C~~~D~l~~----~~~lp--~~~~G-------D~l~i~~~GAY~~~~s~~~fn~~~~p~~v~~ 377 (377)
T cd06843 327 LCTPKDVLAR----DVPVD--RLRAG-------DLVVFPLAGAYGWNISHHDFLMHPHPERIYL 377 (377)
T ss_pred CCCCCCEEee----ccccC--CCCCC-------CEEEEcCCCccchhhchhhhhCCCCCCEEeC
Confidence 9999999876 55666 79999 99999999999999997 9999999999863
No 21
>cd06829 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase. Carboxynorspermidine decarboxylase (CANSDC) catalyzes the decarboxylation of carboxynorspermidine, the last step in the biosynthesis of norspermidine. It is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Based on this similarity, CANSDC may require homodimer formation and the presence of the PLP cofactor for its catalytic activity.
Probab=100.00 E-value=6.5e-59 Score=505.44 Aligned_cols=344 Identities=17% Similarity=0.122 Sum_probs=269.3
Q ss_pred CcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHhcC
Q 005135 128 LPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLC 207 (712)
Q Consensus 128 tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~G~ 207 (712)
||+||||++.|++|+++|+++|.. ++++++||+|||+++.|++.|+++| +|+||+|++||++|+.+.
T Consensus 1 tP~yv~d~~~i~~~~~~~~~~~~~--------~~~~i~YAvKaN~~~~il~~l~~~G----~g~DvaS~~El~~a~~~~- 67 (346)
T cd06829 1 TPCYVLDEAKLRRNLEILKRVQER--------SGAKILLALKAFSMWSVFPLIREYL----DGTTASSLFEARLGREEF- 67 (346)
T ss_pred CCeEEeeHHHHHHHHHHHHHHHhc--------cCCEEEEEEhhcCCHHHHHHHHHhC----CccEecCHHHHHHHHHHC-
Confidence 799999999999999999998853 3579999999999999999999999 699999999999999874
Q ss_pred CCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCC-CCccccCCCC
Q 005135 208 KGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHS-GHFGSTSGEK 286 (712)
Q Consensus 208 ~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~-~~~~~tgg~~ 286 (712)
.+++|++ ++.|+.++|+.|++ .| +.+++||++||++|.+++++ .+.+|+|||||+.... +...++++..
T Consensus 68 --~~~~i~~-~~~k~~~el~~a~~---~~--~~~~~Ds~~EL~~l~~~~~~--~~~~v~lRvnp~~~~~~~~~~~~~~~~ 137 (346)
T cd06829 68 --GGEVHTY-SPAYRDDEIDEILR---LA--DHIIFNSLSQLERFKDRAKA--AGISVGLRINPEYSEVETDLYDPCAPG 137 (346)
T ss_pred --CCceEEE-CCCCCHHHHHHHHH---cC--CEEEECCHHHHHHHHHHHhc--cCCeEEEEECCCCCCCCCceecCCCCC
Confidence 3445555 77889999999986 33 37999999999999999875 4679999999986533 3345678889
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCC
Q 005135 287 GKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGS 366 (712)
Q Consensus 287 SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s 366 (712)
||||++.+++.+. . .++ +.|||||+|||+ +.+.|.++++.+.+++.++ +.++++||||||||++|.
T Consensus 138 sKFG~~~~~~~~~------~-~~~-v~Glh~HvGS~~-~~~~~~~~~~~~~~~~~~~---~~~~~~lDiGGGf~v~~~-- 203 (346)
T cd06829 138 SRLGVTLDELEEE------D-LDG-IEGLHFHTLCEQ-DFDALERTLEAVEERFGEY---LPQLKWLNLGGGHHITRP-- 203 (346)
T ss_pred CCCCCChHHhhhh------h-hcC-ceEEEEccCccc-CHHHHHHHHHHHHHHHHHH---HhcCcEEEcCCCcCCCcC--
Confidence 9999999876542 1 245 889999999999 9999999888887766443 358999999999999973
Q ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCcchhccccceEEEEEEEEEecCCCCCCCCcchhhHhhh
Q 005135 367 KSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEAVSASVSRAAPVAMSPLGLQYLVE 446 (712)
Q Consensus 367 ~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPGRalvA~agvLVt~Vi~vk~~~~~~~~~~~~~~~~lvd 446 (712)
.+++++|++.|...++++ .++|++||||+|||++|+||++|+++|+. +.... ++|
T Consensus 204 ---------~~~~~~~~~~i~~~~~~~-------~~~li~EPGR~lva~ag~lvt~V~~~K~~-~~~~~--------~~d 258 (346)
T cd06829 204 ---------DYDVDRLIALIKRFKEKY-------GVEVYLEPGEAVALNTGYLVATVLDIVEN-GMPIA--------ILD 258 (346)
T ss_pred ---------CCCHHHHHHHHHHHHHHh-------CCEEEEeCchhhhhcceEEEEEEEEEEEc-CceEE--------EEe
Confidence 267999988877666543 35899999999999999999999999975 32111 122
Q ss_pred chhhhHHHHHHHHHHHHHhhhhccCCCCccccccccccccccchhhhcCCcceeeecCCCCCCCCeeeEeecccccCCCc
Q 005135 447 GLTEDARSDYTKMTTAALRAMEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGK 526 (712)
Q Consensus 447 g~~~~~~~~y~~~~~~~~~g~~~~~~~~~~~Y~~N~Svf~SlpD~w~i~q~fPI~pl~rl~e~p~~~~~l~G~TCdS~D~ 526 (712)
.|+...+++.+ ..+..|++........+..+++|+|+||+|.|+
T Consensus 259 -----------------------------------~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~Gp~C~s~D~ 302 (346)
T cd06829 259 -----------------------------------ASATAHMPDVL-EMPYRPPIRGAGEPGEGAHTYRLGGNSCLAGDV 302 (346)
T ss_pred -----------------------------------CChhhcCchhh-ccCCCccccCCCCCCCCceEEEEEcCCCCcccE
Confidence 22221122211 011123322211112345689999999999999
Q ss_pred cccccCCCcccCCccccCCCCCCCcccEEEeecccchhccccCCCCCCCCCcEEEE
Q 005135 527 IDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 582 (712)
Q Consensus 527 I~~fi~~~~~LPl~~l~~G~~~~~~~d~L~~~~~GAYq~~m~s~fNlf~~p~~V~V 582 (712)
|.+ ..+| +++++| |+|+|.++|||+.+|+++||+|++|++|.+
T Consensus 303 l~~-----~~~~-~~l~~G-------D~l~~~~~GAY~~s~ss~fn~~~~p~~v~~ 345 (346)
T cd06829 303 IGD-----YSFD-EPLQVG-------DRLVFEDMAHYTMVKTNTFNGVRLPSIAIR 345 (346)
T ss_pred Eee-----cccC-CCCCCC-------CEEEEeCchhhhhhhhccccCCCCCeEEec
Confidence 864 2444 268998 999999999999999999999999999986
No 22
>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this su
Probab=100.00 E-value=4.5e-57 Score=493.13 Aligned_cols=360 Identities=23% Similarity=0.326 Sum_probs=310.2
Q ss_pred CCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHhc
Q 005135 127 QLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCL 206 (712)
Q Consensus 127 ~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~G 206 (712)
+||+|++|++.|++|+++|+++|+ +.+++|++|||+++.|++.+.+.| +|+||+|.+|+++++++|
T Consensus 1 ~tP~~vid~~~l~~N~~~~~~~~~----------~~~~~~avKAN~~~~v~~~l~~~G----~g~~vaS~~E~~~~~~~G 66 (362)
T cd00622 1 ETPFLVVDLGDVVRKYRRWKKALP----------RVRPFYAVKCNPDPAVLRTLAALG----AGFDCASKGEIELVLGLG 66 (362)
T ss_pred CCCEEEEeHHHHHHHHHHHHHHCC----------CCeEEEEeccCCCHHHHHHHHHcC----CCeEecCHHHHHHHHHcC
Confidence 589999999999999999999885 358999999999999999999999 599999999999999999
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCC
Q 005135 207 CKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEK 286 (712)
Q Consensus 207 ~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~ 286 (712)
+ ++++|+++++.|++++|+.|++ .|+. .+++||++||+++.+.++ ..+++|||+++.... .....
T Consensus 67 ~--~~~~i~~~~~~k~~~~l~~a~~---~gi~-~~~~ds~~el~~l~~~~~----~~~v~vri~~~~~~~-----~~~~~ 131 (362)
T cd00622 67 V--SPERIIFANPCKSISDIRYAAE---LGVR-LFTFDSEDELEKIAKHAP----GAKLLLRIATDDSGA-----LCPLS 131 (362)
T ss_pred C--CcceEEEcCCCCCHHHHHHHHH---cCCC-EEEECCHHHHHHHHHHCC----CCEEEEEEeeCCCCC-----CCccc
Confidence 6 6788999998999999999986 4554 567999999999988774 258999999976422 12235
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCC
Q 005135 287 GKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGS 366 (712)
Q Consensus 287 SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s 366 (712)
||||++++++.++++.+++. .++ +.|||+|+|||+.+.+.+.+.++.+.+++..+++.|..+++||+||||+++|..
T Consensus 132 sRfGi~~~~~~~~~~~~~~~-~~~-~~Glh~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~GGG~~~~y~~- 208 (362)
T cd00622 132 RKFGADPEEARELLRRAKEL-GLN-VVGVSFHVGSQCTDPSAYVDAIADAREVFDEAAELGFKLKLLDIGGGFPGSYDG- 208 (362)
T ss_pred CCCCCCHHHHHHHHHHHHHc-CCE-EEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCcCEEEeCCCcCcccCC-
Confidence 89999999999999998885 567 999999999999999999999999999999998889999999999999999975
Q ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCcchhccccceEEEEEEEEEecCCCCCCCCcchhhHhhh
Q 005135 367 KSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEAVSASVSRAAPVAMSPLGLQYLVE 446 (712)
Q Consensus 367 ~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPGRalvA~agvLVt~Vi~vk~~~~~~~~~~~~~~~~lvd 446 (712)
. ++++++|++.|...+++++.. +.++|++||||++++++++|+|+|+++|+..+. .
T Consensus 209 -~-------~~~~~~~~~~i~~~~~~~~~~---~~~~l~~EpGr~lv~~ag~l~t~V~~vk~~~~~-~------------ 264 (362)
T cd00622 209 -V-------VPSFEEIAAVINRALDEYFPD---EGVRIIAEPGRYLVASAFTLAVNVIAKRKRGDD-D------------ 264 (362)
T ss_pred -C-------CCCHHHHHHHHHHHHHHhCCc---CCCeEEEeCCchhccceEEEEEEEEEEEecCCC-C------------
Confidence 1 479999999999988876542 257899999999999999999999999975430 0
Q ss_pred chhhhHHHHHHHHHHHHHhhhhccCCCCccccccccccccccchhhhcCCcceeeecCCCC-CCCCeeeEeecccccCCC
Q 005135 447 GLTEDARSDYTKMTTAALRAMEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLD-ERPGVRGVLSDLTCDSDG 525 (712)
Q Consensus 447 g~~~~~~~~y~~~~~~~~~g~~~~~~~~~~~Y~~N~Svf~SlpD~w~i~q~fPI~pl~rl~-e~p~~~~~l~G~TCdS~D 525 (712)
...++++|.|+++++.+.|...+.+|+.++++.+ +.+...++|+|+||+++|
T Consensus 265 ---------------------------~~~~~~vd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~~C~~~D 317 (362)
T cd00622 265 ---------------------------RERWYYLNDGVYGSFNEILFDHIRYPPRVLKDGGRDGELYPSSLWGPTCDSLD 317 (362)
T ss_pred ---------------------------ceEEEEEcCCeecchhhhhhccCCceeEEecCCCCCCCeeeEEEEcCCCCccc
Confidence 0146888999999888888777888888886542 345678999999999999
Q ss_pred ccccccCCCcccCCcc-ccCCCCCCCcccEEEeecccchhccccCCCCCCCCCcEEEE
Q 005135 526 KIDKFIGGGTSLPLHE-MVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 582 (712)
Q Consensus 526 ~I~~fi~~~~~LPl~~-l~~G~~~~~~~d~L~~~~~GAYq~~m~s~fNlf~~p~~V~V 582 (712)
+|.+ +..|| + +++| |+|+|.++|||+++|+++||++++|.+|++
T Consensus 318 ~l~~----~~~lp--~~l~~G-------D~l~~~~~GAY~~~~~~~fn~~~~p~~v~~ 362 (362)
T cd00622 318 VIYE----DVLLP--EDLAVG-------DWLLFENMGAYTTAYASTFNGFPPPKIVYV 362 (362)
T ss_pred Eecc----cCcCc--ccCCCC-------CEEEEcCCCCccccccCCCCCCCCCeeEeC
Confidence 9876 45666 6 8999 999999999999999999999999999874
No 23
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.
Probab=100.00 E-value=4.1e-57 Score=503.51 Aligned_cols=374 Identities=18% Similarity=0.249 Sum_probs=296.0
Q ss_pred HHHHHHHhCCCCCCCCCCCCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCC
Q 005135 108 LLKIVKKVSDPKSVGGLGLQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQF 187 (712)
Q Consensus 108 l~el~~~~~~~~~~~~~g~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~ 187 (712)
|.+|+++ ++||+||+|++.|++|+++++++|++. ..+++++|++|||+++.|++.+.+.|
T Consensus 1 ~~~l~~~-----------~~TP~~v~d~~~l~~N~~~l~~~~~~~------~~~~~~~yavKaN~~~~il~~l~~~G--- 60 (423)
T cd06842 1 LVALVEA-----------YGSPLNVLFPQTFRENIAALRAVLDRH------GVDGRVYFARKANKSLALVRAAAAAG--- 60 (423)
T ss_pred ChHHHHh-----------hCCCEEEEcHHHHHHHHHHHHHHHHHh------CCCeEEEEEeccCCCHHHHHHHHHcC---
Confidence 3567777 999999999999999999999999863 13578999999999999999999999
Q ss_pred ccceEecCHHHHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHh-cCCCceEE
Q 005135 188 RFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKK-LNVRPVIG 266 (712)
Q Consensus 188 ~~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~-~g~~~~Ig 266 (712)
+|+||+|.+|+++++++|+ ++++|++.++.|++++|+.|++ .| +.++|||++||++|.+++++ .+.+.+|+
T Consensus 61 -~g~dvaS~~E~~~~~~~G~--~~~~I~~~g~~k~~~~i~~a~~---~g--i~i~vDs~~el~~l~~~a~~~~~~~~~v~ 132 (423)
T cd06842 61 -IGVDVASLAELRQALAAGV--RGDRIVATGPAKTDEFLWLAVR---HG--ATIAVDSLDELDRLLALARGYTTGPARVL 132 (423)
T ss_pred -CCEEECCHHHHHHHHHCCC--CCCeEEEECCCCCHHHHHHHHh---CC--CEEEECCHHHHHHHHHHHHhcCCCCCEEE
Confidence 5999999999999999995 7788999999999999999986 34 46999999999999999987 77888999
Q ss_pred EEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHc-CCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHH
Q 005135 267 ARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVA-EMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVR 345 (712)
Q Consensus 267 LRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~-~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~ 345 (712)
||||+... +..+|||++.+++.++++.+++. +.++ +.|||||+||| +.+.+.++++.+.+++.++++
T Consensus 133 lRIn~~~~---------~~~sRfGi~~~e~~~~~~~i~~~~~~l~-l~Glh~H~gs~--~~~~~~~~~~~~~~~~~~l~~ 200 (423)
T cd06842 133 LRLSPFPA---------SLPSRFGMPAAEVRTALERLAQLRERVR-LVGFHFHLDGY--SAAQRVAALQECLPLIDRARA 200 (423)
T ss_pred EEEeCCCC---------CCCCCCCCCHHHHHHHHHHHHhcCCCCe-EEEEEEEcCCC--CHHHHHHHHHHHHHHHHHHHh
Confidence 99998542 34699999999999999999988 6678 99999999998 888999999999999999998
Q ss_pred cCCCCcEEEEcCCCCcCcCCCCCC------------------------------CCC---CCcCCCHHHHHHHHHHHH--
Q 005135 346 LGANMQVIDIGGGLGIDYDGSKSA------------------------------DSD---LSVAYTLEEYASAVVQAI-- 390 (712)
Q Consensus 346 ~G~~l~~IDIGGGlgv~Y~~s~~~------------------------------~~~---~s~~ysleeya~~Iv~~l-- 390 (712)
.|.++++||||||||++|.+.+.. ..+ ....+++++|++.|...+
T Consensus 201 ~g~~~~~idiGGG~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (423)
T cd06842 201 LGLAPRFIDIGGGFPVSYLADAAEWEAFLAALTEALYGYGRPLTWRNEGGTLRGPDDFYPYGQPLVAADWLRAILSAPLP 280 (423)
T ss_pred cCCCCCEEEeCCCcCCCcCCcHHHHHHHHHhhhhhhhccCCcccccccccccCCCcccccCCCCCCHHHHHHHHHhcccc
Confidence 899999999999999999764310 000 001347788888776533
Q ss_pred -----HHHHHhcCCCCCeEEecCcchhccccceEEEEEEEEEecCCCCCCCCcchhhH-hhhchhhhHHHHHHHHHHHHH
Q 005135 391 -----RYVCDRKNVKHPVLCSESGRAIVSHHSILIFEAVSASVSRAAPVAMSPLGLQY-LVEGLTEDARSDYTKMTTAAL 464 (712)
Q Consensus 391 -----~~~~~~~gv~~p~Li~EPGRalvA~agvLVt~Vi~vk~~~~~~~~~~~~~~~~-lvdg~~~~~~~~y~~~~~~~~ 464 (712)
++.+.. ..++|++||||+|||++|+|||+|+++|+.+.. .++ ++||
T Consensus 281 ~~~~~~~~~~~---~~~~l~~EpGR~lva~ag~lvt~V~~vK~~~~~--------~~~~~~Dg----------------- 332 (423)
T cd06842 281 QGRTIAERLRD---NGITLALEPGRALLDQCGLTVARVAFVKQLGDG--------NHLIGLEG----------------- 332 (423)
T ss_pred ccccHHHHHHh---cCCEEEEcCCHHHHhhcCeEEEEEEEEeecCCC--------CeEEEEec-----------------
Confidence 444432 246999999999999999999999999986220 222 2344
Q ss_pred hhhhccCCCCccccccccccccccchhhhcCCcceeeecC--CCC---CCCCeeeEeecccccCCCccccccCCCcccCC
Q 005135 465 RAMEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIH--HLD---ERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPL 539 (712)
Q Consensus 465 ~g~~~~~~~~~~~Y~~N~Svf~SlpD~w~i~q~fPI~pl~--rl~---e~p~~~~~l~G~TCdS~D~I~~fi~~~~~LPl 539 (712)
+|+++. .|. +.|.+.|+. +.. +.....++|+||||+|.|+|.+ ....||.
T Consensus 333 -----g~~~~~-~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~v~Gp~C~~~D~l~~---~~~~lp~ 387 (423)
T cd06842 333 -----NSFSAC-EFS----------------SEFLVDPLLIPAPEPTTDGAPIEAYLAGASCLESDLITR---RKIPFPR 387 (423)
T ss_pred -----CCCcCC-ccc----------------cceecCceeccCCCCcCCCCCceEEEeCccccchhhhhh---hhccCCC
Confidence 333321 111 111222211 111 1234678999999999998863 1335662
Q ss_pred ccccCCCCCCCcccEEEeecccchhcccc-CCCCCCCCCcEEEE
Q 005135 540 HEMVGGGCGERGPYYLGMFLGGAYEEALG-GVHNLFGGPSVVRV 582 (712)
Q Consensus 540 ~~l~~G~~~~~~~d~L~~~~~GAYq~~m~-s~fNlf~~p~~V~V 582 (712)
++++| |+|+|.++|||+.+++ ++||+|++|++|+|
T Consensus 388 -~~~~G-------D~l~~~~~GAY~~~~~~~~fn~~~~p~ev~~ 423 (423)
T cd06842 388 -LPKPG-------DLLVFPNTAGYQMDFLESRFHRHPLPRRVVV 423 (423)
T ss_pred -CCCCC-------CEEEEecchHHHHHhhhhhhcCCCCCccccC
Confidence 58999 9999999999999655 79999999999875
No 24
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=100.00 E-value=1.1e-55 Score=528.93 Aligned_cols=357 Identities=22% Similarity=0.268 Sum_probs=287.6
Q ss_pred CCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHh
Q 005135 126 LQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSC 205 (712)
Q Consensus 126 ~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~ 205 (712)
.+||+||||++.|++|+++|++.++ ..+++||+|||+++.|++.+.++| +|+||+|++|+++|+++
T Consensus 501 ~~tP~yV~d~~~i~~n~~~l~~~~~----------~~~i~yAvKaN~~~~vl~~l~~~G----~g~dvaS~~El~~al~~ 566 (861)
T PRK08961 501 AGSPCYVYHLPTVRARARALAALAA----------VDQRFYAIKANPHPAILRTLEEEG----FGFECVSIGELRRVFEL 566 (861)
T ss_pred cCCCEEEEEHHHHHHHHHHHHhcCC----------CCcEEEEeecCCCHHHHHHHHHcC----CeEEEcCHHHHHHHHHh
Confidence 5899999999999999999987543 357999999999999999999999 69999999999999998
Q ss_pred --cCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCC-cccc
Q 005135 206 --LCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGH-FGST 282 (712)
Q Consensus 206 --G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~-~~~t 282 (712)
|+ +|++|+|++|+|+.++|+.|++ .|+ .|++||++||++|.+++++ .+|+|||||.....++ -..+
T Consensus 567 ~~G~--~~~~Ii~~gp~K~~~~l~~A~~---~gv--~i~vDS~~EL~~i~~~~~~----~~v~lRinp~~~~~~~~~~~~ 635 (861)
T PRK08961 567 FPEL--SPERVLFTPNFAPRAEYEAAFA---LGV--TVTLDNVEPLRNWPELFRG----REVWLRIDPGHGDGHHEKVRT 635 (861)
T ss_pred cCCC--CCCeEEECCCCCCHHHHHHHHH---CCC--EEEECCHHHHHHHHHhCCC----CcEEEEECCCCCCCCCccccc
Confidence 74 8999999999999999999986 454 6899999999999988753 6899999998653333 3467
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcC
Q 005135 283 SGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGID 362 (712)
Q Consensus 283 gg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~ 362 (712)
++..||||++++++.++++.+++.+ ++ +.|||||+|||+.+++.|.+.++.+.++.. ....+++||||||||++
T Consensus 636 ~~~~sKFGi~~~~~~~~~~~~~~~~-l~-l~GlH~H~GS~~~~~~~~~~~~~~~~~l~~----~~~~~~~iDiGGGf~v~ 709 (861)
T PRK08961 636 GGKESKFGLSQTRIDEFVDLAKTLG-IT-VVGLHAHLGSGIETGEHWRRMADELASFAR----RFPDVRTIDLGGGLGIP 709 (861)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCC-CC-EEEEEEecCCCCCCHHHHHHHHHHHHHHHH----hccCCcEEEecCccCcC
Confidence 7889999999999999999998876 56 999999999999999988876666555443 34579999999999999
Q ss_pred cCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCcchhccccceEEEEEEEEEecCCCCCCCCcchhh
Q 005135 363 YDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEAVSASVSRAAPVAMSPLGLQ 442 (712)
Q Consensus 363 Y~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPGRalvA~agvLVt~Vi~vk~~~~~~~~~~~~~~~ 442 (712)
|..... +++++.|++.|.+. ++.. +.++|++||||||||++|+||++|+++|...+..+++
T Consensus 710 y~~~~~-------~~~~~~~~~~i~~~----~~~~--~~~~li~EPGR~lva~ag~lvt~V~~vK~~~~~~~~~------ 770 (861)
T PRK08961 710 ESAGDE-------PFDLDALDAGLAEV----KAQH--PGYQLWIEPGRYLVAEAGVLLARVTQVKEKDGVRRVG------ 770 (861)
T ss_pred CCCCCC-------CCCHHHHHHHHHHH----Hhhc--CCCEEEEccCceeeecceEEEEEEEEEEecCCceEEE------
Confidence 975432 47899998877553 3332 3479999999999999999999999999865522222
Q ss_pred HhhhchhhhHHHHHHHHHHHHHhhhhccCCCCccccccccccccccchhhhcCCcceeeecCCCCCCCCeeeEeeccccc
Q 005135 443 YLVEGLTEDARSDYTKMTTAALRAMEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCD 522 (712)
Q Consensus 443 ~lvdg~~~~~~~~y~~~~~~~~~g~~~~~~~~~~~Y~~N~Svf~SlpD~w~i~q~fPI~pl~rl~e~p~~~~~l~G~TCd 522 (712)
+|+ ||+.+. +.++|+ ..+++..+.+.++.+...++|+||||+
T Consensus 771 --~d~----------------------G~~~l~-----~p~~~~---------~~~~~~~~~~~~~~~~~~~~v~Gp~C~ 812 (861)
T PRK08961 771 --LET----------------------GMNSLI-----RPALYG---------AYHEIVNLSRLDEPAAGTADVVGPICE 812 (861)
T ss_pred --ECC----------------------cccccC-----Chhhhc---------ccccceecCCCCCCCceEEEEEcCCCC
Confidence 232 222211 112221 122444444444455678999999999
Q ss_pred CCCccccccCCCcccCCccccCCCCCCCcccEEEeecccchhccccCCCCCCCCCcEEEEE
Q 005135 523 SDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVL 583 (712)
Q Consensus 523 S~D~I~~fi~~~~~LPl~~l~~G~~~~~~~d~L~~~~~GAYq~~m~s~fNlf~~p~~V~V~ 583 (712)
+.|++.+ +..|| ++++| |+|+|.++|||+.+|+++||++|+|.+|++.
T Consensus 813 ~~D~l~~----~~~lp--~l~~G-------D~l~~~~~GAY~~~~ss~fn~~p~p~ev~~~ 860 (861)
T PRK08961 813 SSDVLGK----RRRLP--ATAEG-------DVILIANAGAYGYSMSSTYNLREPAREVVLD 860 (861)
T ss_pred CCCEEEe----cccCC--CCCCC-------CEEEEeCCCcchHHHhhhhhCCCCCcEEEEc
Confidence 9999876 44555 89999 9999999999999999999999999999875
No 25
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=100.00 E-value=1.1e-45 Score=384.37 Aligned_cols=247 Identities=27% Similarity=0.402 Sum_probs=213.7
Q ss_pred cHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHhcCCCCCCc
Q 005135 134 LPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEA 213 (712)
Q Consensus 134 d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~G~~~~p~~ 213 (712)
|+++++++++++.+++.. .+++++||+|||+++.|++.+.+.| +|+||+|.+||.+|+++|+ +|++
T Consensus 1 d~~~~~~~~~~~~~~~~~--------~~~~i~yA~KaN~~~~vl~~l~~~g----~g~dv~S~~El~~a~~~g~--~~~~ 66 (251)
T PF02784_consen 1 DLDRIIERIRAAWKAFLP--------YNVKIFYAVKANPNPAVLKILAEEG----CGFDVASPGELELALKAGF--PPDR 66 (251)
T ss_dssp EHHHHHHHHHHHHHHHTT--------T-EEEEEEGGGS--HHHHHHHHHTT----CEEEESSHHHHHHHHHTTT--TGGG
T ss_pred ChHHHHHHHHHHHHhcCC--------CCcEEEEEECcCCCHHHHHHHHHcC----CceEEecccchHHHHhhhc--cccc
Confidence 567777777776666642 1489999999999999999999999 6999999999999999995 8899
Q ss_pred EEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeC-CCCCCCccccCCCCCCCCCC
Q 005135 214 LLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLR-TKHSGHFGSTSGEKGKFGLT 292 (712)
Q Consensus 214 II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~-~~~~~~~~~tgg~~SKFGl~ 292 (712)
|+|++|.|+.++|+.|++. |+. .|+|||++||++|.+++++. +|+|||||. ...++.+.++++..||||++
T Consensus 67 Ii~~gp~k~~~~l~~a~~~---~~~-~i~vDs~~el~~l~~~~~~~----~v~lRin~~~~~~~~~~~~~g~~~skFGi~ 138 (251)
T PF02784_consen 67 IIFTGPGKSDEELEEAIEN---GVA-TINVDSLEELERLAELAPEA----RVGLRINPGIGAGSHPKISTGGKDSKFGID 138 (251)
T ss_dssp EEEECSS--HHHHHHHHHH---TES-EEEESSHHHHHHHHHHHCTH----EEEEEBE-SESTTTSCHHCSSSHTSSSSBE
T ss_pred eeEecCcccHHHHHHHHhC---Cce-EEEeCCHHHHHHHhccCCCc----eeeEEEeeccccccccccCCCCCCCcCCcC
Confidence 9999999999999999973 333 79999999999999998764 999999999 44556677888999999999
Q ss_pred HHH-HHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHH-HcCCC-CcEEEEcCCCCcCcCCCCCC
Q 005135 293 TTQ-ILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELV-RLGAN-MQVIDIGGGLGIDYDGSKSA 369 (712)
Q Consensus 293 ~~e-~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~-~~G~~-l~~IDIGGGlgv~Y~~s~~~ 369 (712)
.++ +.++++++++.+ ++ +.|||||+|||+.+.+.|.++++.+.+++.++. +.|++ +++||||||||++|..
T Consensus 139 ~~~~~~~~l~~~~~~~-l~-l~GlH~H~gS~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~idiGGG~~~~y~~---- 212 (251)
T PF02784_consen 139 IEEEAEEALERAKELG-LR-LVGLHFHVGSQILDAEAFRQAIERLLDLAEELKEELGFEDLEFIDIGGGFGVPYDD---- 212 (251)
T ss_dssp GGGHHHHHHHHHHHTT-EE-EEEEEE-HCSSBSSCHHHHHHHHHHHHHHHHHHHHTTTTT-SEEEEESSB-SSSSS----
T ss_pred hHHHHHHHHHhhccce-EE-EEEeeeeeccCCcchHHHHHHHHHHHHHHhhhccccccccccEEEeeCCCCCCCcc----
Confidence 999 999999999999 67 999999999999999999999999999999998 78988 9999999999999964
Q ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCcchhccc
Q 005135 370 DSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSH 415 (712)
Q Consensus 370 ~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPGRalvA~ 415 (712)
++++++|+..|...+++++.. +.+.|+|++||||||||+
T Consensus 213 ------~~~~~~~~~~i~~~~~~~~~~-~~~~~~l~~EpGR~lva~ 251 (251)
T PF02784_consen 213 ------EYDLEEYAEVIREALKEYFEE-GLPGPKLIIEPGRYLVAN 251 (251)
T ss_dssp ------SSCHHHHHHHHHHHHHHHHCH-TCTTSEEEEEESHHHHGG
T ss_pred ------cccchhHHHHHHHHHHHHHhc-cCCCCEEEEeeCHHHhCC
Confidence 378999999999999999987 678899999999999986
No 26
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=99.95 E-value=7.8e-27 Score=234.94 Aligned_cols=197 Identities=22% Similarity=0.274 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHhcCCCCCCcEEEe
Q 005135 138 LRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVC 217 (712)
Q Consensus 138 L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~G~~~~p~~II~~ 217 (712)
|++|++.+++.+++ +++++|++|+|+++.|++.+.+.+ .|++|+|..|+..++++|+ ++.+|+++
T Consensus 1 l~~N~~~i~~~~~~---------~~~i~~~vKan~~~~i~~~~~~~~----~~~~v~s~~E~~~~~~~g~--~~~~I~~~ 65 (211)
T cd06808 1 IRHNYRRLREAAPA---------GITLFAVVKANANPEVARTLAALG----TGFDVASLGEALLLRAAGI--PPEPILFL 65 (211)
T ss_pred ChHHHHHHHHhCCC---------CCEEEEEEecCCCHHHHHHHHHcC----CcEEEcCHHHHHHHHHcCC--CHHHEEEc
Confidence 57899999998863 468999999999999999999986 6999999999999999995 67889999
Q ss_pred CCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHH
Q 005135 218 NGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQIL 297 (712)
Q Consensus 218 ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~ 297 (712)
++.|++++++.++. .| ...++|||+++|+.+.+.+++.+.+.+|+|||++. ...+|||++++++.
T Consensus 66 ~~~~~~~~l~~~~~---~~-~~~~~ids~~~l~~l~~~~~~~~~~~~v~lrv~~g-----------~~~~R~G~~~~e~~ 130 (211)
T cd06808 66 GPCKQVSELEDAAE---QG-VIVVTVDSLEELEKLEEAALKAGPPARVLLRIDTG-----------DENGKFGVRPEELK 130 (211)
T ss_pred CCCCCHHHHHHHHH---cC-CCEEEeCCHHHHHHHHHHHHHhCCCceEEEEEcCC-----------CCCCCCCCCHHHHH
Confidence 99999999999987 32 24789999999999999998888889999999753 14689999999999
Q ss_pred HHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCC
Q 005135 298 RVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDG 365 (712)
Q Consensus 298 ~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~ 365 (712)
++++.+++.+.++ +.|||+|+||+..+...+.+.+++..+++.++.+.|.++.+||+|||+++.|..
T Consensus 131 ~~~~~i~~~~~l~-l~Gl~~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Ggg~~~~~~~ 197 (211)
T cd06808 131 ALLERAKELPHLR-LVGLHTHFGSADEDYSPFVEALSRFVAALDQLGELGIDLEQLSIGGSFAILYLQ 197 (211)
T ss_pred HHHHHHHhCCCCc-EEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCcCcCC
Confidence 9999999988788 999999999998878889999999999999998889999999999999999863
No 27
>cd06819 PLPDE_III_LS_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Low Specificity D-Threonine Aldolase. Low specificity D-threonine aldolase (Low specificity D-TA, EC 4.3.1.18), encoded by dtaAS gene from Arthrobacter sp. strain DK-38, is the prototype of this subfamily. Low specificity D-TAs are fold type III PLP-dependent enzymes that catalyze the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Members of this subfamily show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that t
Probab=99.91 E-value=5.2e-23 Score=224.73 Aligned_cols=252 Identities=14% Similarity=0.145 Sum_probs=191.2
Q ss_pred CCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHh
Q 005135 126 LQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSC 205 (712)
Q Consensus 126 ~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~ 205 (712)
++||++++|.+.|++|++++++.+++. +.++.|.+|+|.++.|++.+.+.|+ .|++|+|..|++.++++
T Consensus 5 ~~tP~~~id~~~l~~N~~~l~~~~~~~--------~~~l~~~~K~h~~~~i~~~~~~~G~---~~~~vas~~Ea~~~~~~ 73 (358)
T cd06819 5 IDTPALVLDLDALERNIKRMAAFAKAH--------GVRLRPHAKTHKCPAIARRQIAAGA---VGVCCQKLSEAEVMAAA 73 (358)
T ss_pred cCCceEEEEHHHHHHHHHHHHHHHHHc--------CCcccccchhhcCHHHHHHHHhCCC---CcEEEccHHHHHHHHHC
Confidence 889999999999999999999999752 3567889999999999999999995 59999999999999999
Q ss_pred cCCCCCCcEEEeCCCCC----HHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccc
Q 005135 206 LCKGSPEALLVCNGFKD----AGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGS 281 (712)
Q Consensus 206 G~~~~p~~II~~ng~K~----~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~ 281 (712)
|+ + .|++.++.+. .+.++++.. . ++.++|||+++++.|.+++++.+++.+|.|||+++
T Consensus 74 G~--~--~ili~~~~~~~~~~~~~~~~~~~---~--~i~~~vDs~~~l~~l~~~a~~~~~~~~V~l~vd~G--------- 135 (358)
T cd06819 74 GI--R--DILITNEVVGPAKIARLAALARR---A--PLIVCVDHPDNVRALAAAAVEAGVRLDVLVEIDVG--------- 135 (358)
T ss_pred CC--C--eEEEECCcCCHHHHHHHHHHhcC---C--CEEEEECCHHHHHHHHHHHHhcCCceEEEEEECCC---------
Confidence 95 3 4777766543 333444432 3 36899999999999999999888888999999642
Q ss_pred cCCCCCCCCCC-HHHHHHHHHHHHHcCCCCceeEEEEecCCCC------CChHHHHHHHHHHHHHHHHHHHcCCCCcEEE
Q 005135 282 TSGEKGKFGLT-TTQILRVVKKLEVAEMLDCFQLLHFHIGSQI------PSTALLTDGVGEAAQIYCELVRLGANMQVID 354 (712)
Q Consensus 282 tgg~~SKFGl~-~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi------~d~~~~~~ai~~~~~~~~~L~~~G~~l~~ID 354 (712)
.+|||+. .+++.++++.+++.+.|+ +.|||+|.|++. .+...+.+.++.+.++..++++.|.++.+|+
T Consensus 136 ----~~R~Gv~~~~~~~~l~~~i~~~~~l~-l~Gi~~y~G~~~h~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~vs 210 (358)
T cd06819 136 ----QGRCGVPPGEAALALARTIAALPGLR-FAGLQAYHGHLQHIRDYEERRAAIAEAAEALQATRDALEAAGLPCEIVT 210 (358)
T ss_pred ----CCcCCCCChHHHHHHHHHHHhCCCce-EeEEEeeCchhccCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEe
Confidence 2689998 678999999999888888 999999999864 2334556677777778888887899999996
Q ss_pred EcCCCCcCcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCcchhccccceEEEEEEEEE
Q 005135 355 IGGGLGIDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEAVSAS 427 (712)
Q Consensus 355 IGGGlgv~Y~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPGRalvA~agvLVt~Vi~vk 427 (712)
|||+|+.|...... .+.++..-..-.+..... ....|||+.+...+..++++|+++.
T Consensus 211 -gGgs~~~~~~~~~~--------~~~elr~G~~i~~d~~~~-------~~~~~~~~~~~~~A~~v~a~Vis~~ 267 (358)
T cd06819 211 -GGGTGTYEFEAASG--------VYTELQAGSYVFMDADYG-------DNEDEGGAPPFENALFVLTTVISAN 267 (358)
T ss_pred -cCCCcChhhhccCC--------cceEEccCceEEecHHHH-------hcCCccCCCccceeeEEEEEEeeec
Confidence 99999988533210 011110000000000000 1122799999999999999999843
No 28
>cd06812 PLPDE_III_DSD_D-TA_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.90 E-value=2.9e-22 Score=220.19 Aligned_cols=208 Identities=14% Similarity=0.157 Sum_probs=170.9
Q ss_pred CCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHh
Q 005135 126 LQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSC 205 (712)
Q Consensus 126 ~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~ 205 (712)
++||++++|.+.|++|++++++.++.. +.+++|++|+|.++.+++.+.+.|+ .|++|+|.+|++.++++
T Consensus 4 ~~tP~~vid~~~l~~Ni~~~~~~~~~~--------~~~l~~~vKa~~~~~i~~~~~~~G~---~~~~vas~~Ea~~~~~a 72 (374)
T cd06812 4 LDTPFLLLDEARMDRNIARLRQRLSRL--------GVRLRPHLKTAKSLEVARRLLAAGA---SPATVSTLKEAEAFAEA 72 (374)
T ss_pred CCCceEEEeHHHHHHHHHHHHHHHHHc--------CCceeeEecccCCHHHHHHHHhCCC---CcEEEccHHHHHHHHHc
Confidence 889999999999999999999998752 4688999999999999999999996 58999999999999999
Q ss_pred cCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCC
Q 005135 206 LCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGE 285 (712)
Q Consensus 206 G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~ 285 (712)
|+ +.+++.++ +.++.++.+....+.++++.++|||+++|+.|.+++++.+++.+|.|||+. |
T Consensus 73 G~----~~il~~~~-~~~~~~~~~~~l~~~~~~~~~~vds~~~l~~l~~~a~~~~~~~~V~l~vd~-----------G-- 134 (374)
T cd06812 73 GY----RDILYAVG-IAPAKLPRVLALRRQGVNLTILLDSVEQAQAVAAFSRQHGVRFPVLIEIDC-----------D-- 134 (374)
T ss_pred CC----CeeEEeCC-CCHHHHHHHHHHHhcCCceEEEECCHHHHHHHHHHHHHcCCceEEEEEeCC-----------C--
Confidence 95 35778887 477777766654334666789999999999999999988888899999853 2
Q ss_pred CCCCCCCHH-H-HHHHHHHHHHcCCCCceeEEEEecCCC--CCChHHHHHHHHH----HHHHHHHHHHcCCCCcEEEEcC
Q 005135 286 KGKFGLTTT-Q-ILRVVKKLEVAEMLDCFQLLHFHIGSQ--IPSTALLTDGVGE----AAQIYCELVRLGANMQVIDIGG 357 (712)
Q Consensus 286 ~SKFGl~~~-e-~~~~l~~l~~~~~L~~l~GLHfHiGSq--i~d~~~~~~ai~~----~~~~~~~L~~~G~~l~~IDIGG 357 (712)
.+|||+.++ + +.++++.++. +.++ +.|||+|.||| +.+...+++..++ +.++..++++.|.++.++|+||
T Consensus 135 ~~R~Gv~~~~~~~~~l~~~i~~-~~l~-l~Gi~~H~G~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~v~~Gg 212 (374)
T cd06812 135 GHRGGIAPDSDALLEIARILHD-GGAE-LRGVLTHAGESYACRTPEALAAAAEQERAAAVRAAERLRAAGLPCPVVSVGS 212 (374)
T ss_pred CCcCCCCCCcHHHHHHHHHHhc-CCce-EEEEEccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEeecC
Confidence 368999764 3 5666666653 5678 99999999997 4577766655544 6777777777899999999999
Q ss_pred CCCcCcC
Q 005135 358 GLGIDYD 364 (712)
Q Consensus 358 Glgv~Y~ 364 (712)
+.++.+.
T Consensus 213 t~~~~~~ 219 (374)
T cd06812 213 TPTAHFA 219 (374)
T ss_pred Chhhhhh
Confidence 9888775
No 29
>cd00430 PLPDE_III_AR Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with activ
Probab=99.90 E-value=1.8e-21 Score=213.33 Aligned_cols=245 Identities=13% Similarity=0.084 Sum_probs=190.6
Q ss_pred EEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCC----cHHHHHHHHHcCCCCccceEecCHHHHHHHHHh
Q 005135 130 LIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQ----DRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSC 205 (712)
Q Consensus 130 l~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~----~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~ 205 (712)
.+++|++.|++|++++++.++. +.+++|++|+|. .+.|++.+.++|+ .+++|+|..|+..++++
T Consensus 3 ~l~Id~~~i~~N~~~l~~~~~~---------~~~l~~vvKan~yGhg~~~i~~~l~~~G~---~~~~vas~~Ea~~~~~~ 70 (367)
T cd00430 3 WAEIDLDALRHNLRVIRRLLGP---------GTKIMAVVKADAYGHGAVEVAKALEEAGA---DYFAVATLEEALELREA 70 (367)
T ss_pred EEEEEHHHHHHHHHHHHHhCCC---------CCEEEEEEeeccccCcHHHHHHHHHHCCC---CEEEECcHHHHHHHHhc
Confidence 5789999999999999998852 468999999998 5999999999985 48999999999999999
Q ss_pred cCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCC
Q 005135 206 LCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGE 285 (712)
Q Consensus 206 G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~ 285 (712)
|+ +++ +++.++.. .++++.++. .+ +.++|||+++|+.|.+.+++.+++.+|.|||+. |
T Consensus 71 g~--~~~-i~~~~~~~-~~~~~~~~~---~~--i~~~vds~~~l~~l~~~a~~~~~~~~v~l~vdt-----------G-- 128 (367)
T cd00430 71 GI--TAP-ILVLGGTP-PEEAEEAIE---YD--LTPTVSSLEQAEALSAAAARLGKTLKVHLKIDT-----------G-- 128 (367)
T ss_pred CC--CCC-EEEEeCCC-HHHHHHHHH---cC--CEEEECCHHHHHHHHHHHHHcCCceEEEEEEcC-----------C--
Confidence 95 444 44445544 678998876 33 478999999999999999888888889999863 3
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCCC-hHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcC
Q 005135 286 KGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPS-TALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYD 364 (712)
Q Consensus 286 ~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d-~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~ 364 (712)
.+|||++++++.++++.+++.+.++ +.|||+|+||+..+ .....+.++...++...+.+.|+++.++++||+.++.|.
T Consensus 129 ~~R~G~~~~e~~~~~~~i~~~~~l~-~~Gi~~H~~~~~~~~~~~~~~q~~~~~~~~~~l~~~g~~~~~v~~g~s~~~~~~ 207 (367)
T cd00430 129 MGRLGFRPEEAEELLEALKALPGLE-LEGVFTHFATADEPDKAYTRRQLERFLEALAELEEAGIPPPLKHLANSAAILRF 207 (367)
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCce-EEEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCcEEccCCHHHhCC
Confidence 2899999999999999999888888 99999999998766 467778888888888888878889999999999999885
Q ss_pred CCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCcchhccccceEEEEEEEEEecC
Q 005135 365 GSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNV-KHPVLCSESGRAIVSHHSILIFEAVSASVSR 430 (712)
Q Consensus 365 ~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv-~~p~Li~EPGRalvA~agvLVt~Vi~vk~~~ 430 (712)
.+. .+++-.....+ +|. +.+.. +.....-+++.|+++|+++|..+
T Consensus 208 ~~~--------~~d~vR~G~~l----------yG~~~~~~~---~~~~~l~~a~~l~a~Vi~vk~~~ 253 (367)
T cd00430 208 PEA--------HFDMVRPGIAL----------YGLYPSPEV---KSPLGLKPVMSLKARVVQVKTVP 253 (367)
T ss_pred ccc--------cCCeEeeCeEE----------ECcCCCccc---ccccCCceeeEEEEEEEEEEEcC
Confidence 321 12221111111 111 00000 01223458999999999999865
No 30
>cd06818 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase. This subfamily is composed of Burkholderia cepacia cryptic D-serine dehydratase (cryptic DSD), which is also called D-serine deaminase, and similar bacterial proteins. Members of this subfamily are fold type III PLP-dependent enzymes with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity, it is possible cryptic DSDs may also form dimers. Cryptic DSDs are distinct from the ubiquitous bacterial DSDs coded by the dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PLP-dependent enzymes. At present, the enzymatic and biochemical properties
Probab=99.88 E-value=3.8e-21 Score=212.25 Aligned_cols=250 Identities=14% Similarity=0.135 Sum_probs=190.0
Q ss_pred CCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHh
Q 005135 126 LQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSC 205 (712)
Q Consensus 126 ~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~ 205 (712)
+.||++++|.+.|++|++++++.++.. +.++.|.+|+|..+.+++.+.+.|+ .|++|+|..|++.+++.
T Consensus 1 ~~tP~l~idl~~l~~N~~~m~~~~~~~--------~~~l~~h~Kt~~~~~i~~~~~~~G~---~g~~vas~~Ea~~l~~~ 69 (382)
T cd06818 1 VSLPLLVLDASALAHNLAWMQAFAAAH--------GVKLAPHGKTTMAPQLFRRQLEAGA---WGITVATVAQARVALAF 69 (382)
T ss_pred CCCcEEEEEHHHHHHHHHHHHHHHhhc--------CcEEEeecchhhhHHHHHHHHHcCC---CEEEEeEHHHHHHHHHc
Confidence 469999999999999999999988642 4688899999999999999999995 49999999999999998
Q ss_pred cCCCCCCcEEEeCCC--CC-HHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCcccc
Q 005135 206 LCKGSPEALLVCNGF--KD-AGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGST 282 (712)
Q Consensus 206 G~~~~p~~II~~ng~--K~-~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~t 282 (712)
|+ .++++.++. |+ .++|..+++. -.+.++.++|||+++++.|.+.+++.+++..|.|||++.
T Consensus 70 G~----~~il~~~~~~~~~~~~~l~~l~~~-~~~~~i~~~vds~~~l~~L~~~a~~~g~~~~v~i~vn~g---------- 134 (382)
T cd06818 70 GV----RRVLLANQLVGKANLRRLAALLAA-DPDFEFFCLVDSVDNVRALAAFFAALERPLNVLIELGVP---------- 134 (382)
T ss_pred CC----CeEEEecCcCChHHHHHHHHhhhc-CCCCCEEEEECCHHHHHHHHHHHHhcCCceEEEEEECCC----------
Confidence 84 357777543 33 3346555531 014556799999999999999998888888999999742
Q ss_pred CCCCCCCCCC-HHHHHHHHHHHHHcCCCCceeEEEEecCCC-----CCChHHHHHHHHHHHHHHHHHHHcCC-CCcE-EE
Q 005135 283 SGEKGKFGLT-TTQILRVVKKLEVAEMLDCFQLLHFHIGSQ-----IPSTALLTDGVGEAAQIYCELVRLGA-NMQV-ID 354 (712)
Q Consensus 283 gg~~SKFGl~-~~e~~~~l~~l~~~~~L~~l~GLHfHiGSq-----i~d~~~~~~ai~~~~~~~~~L~~~G~-~l~~-ID 354 (712)
..|.|+. .+++.++++.+.+.+.++ +.|||+|.|++ ..+.+...+.++.+.++..+|++.+. +++. ++
T Consensus 135 ---~~R~G~~~~~~~~~l~~~i~~~~~l~-l~Gi~~~~G~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~il 210 (382)
T cd06818 135 ---GGRTGVRTEAEALALADAIAASPALR-LAGVEGYEGVAAHDDSEETLAAVRAFLARAVDLARRLAERGLFPDRELIL 210 (382)
T ss_pred ---CCCCCCCCHHHHHHHHHHHHcCCCce-EeEEEeeccccccCCChhHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEE
Confidence 4678995 577899999999888898 99999999986 34566777778888888888877664 3343 55
Q ss_pred EcCCCCcCcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCcchhccccceEEEEEEEEEec
Q 005135 355 IGGGLGIDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEAVSASVS 429 (712)
Q Consensus 355 IGGGlgv~Y~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPGRalvA~agvLVt~Vi~vk~~ 429 (712)
.|||=+ +++.. ...+....... ...+.+|||||++.+++.+++.|.++|..
T Consensus 211 SgGgT~-----------------~~~~~----~~~~~~~~~~~---~~~~el~pG~y~~~D~g~~~~~~~~~k~~ 261 (382)
T cd06818 211 TAGGSA-----------------WFDLV----AEALAALALDG---PVTLVLRSGCYVTHDHGIYRRAQQALRAR 261 (382)
T ss_pred EecCCH-----------------hHHHH----HHhhcccccCC---ceeEEEecCeeEEecHHHHhhhhhhhhcc
Confidence 566511 22211 11111111111 23689999999999999999998888864
No 31
>cd06820 PLPDE_III_LS_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Low Specificity D-Threonine Aldolase-like. This subfamily is composed of uncharacterized bacterial proteins with similarity to low specificity D-threonine aldolase (D-TA), which is a fold type III PLP-dependent enzyme that catalyzes the interconversion between D-threonine/D-allo-threonine and glycine plus acetaldehyde. Both PLP and divalent cations (eg. Mn2+) are required for catalytic activity. Low specificity D-TAs show similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that the monomeric form of low specificity D-TAs exh
Probab=99.84 E-value=5e-19 Score=193.16 Aligned_cols=209 Identities=10% Similarity=0.063 Sum_probs=171.7
Q ss_pred CCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHh
Q 005135 126 LQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSC 205 (712)
Q Consensus 126 ~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~ 205 (712)
++||++++|.+.|++|++++++.++.. ++++.|.+|+|..+.|++.+.+.|+ .|++|+|..|++.+++.
T Consensus 1 ~~tP~l~id~~~l~~Ni~~~~~~~~~~--------~v~l~~~~K~h~~~~i~~~~~~~G~---~~~~vas~~Ea~~~~~~ 69 (353)
T cd06820 1 LDTPALLIDLDRLERNIARMQAYADAH--------GLSLRPHIKTHKSPEIARLQLAAGA---IGITVATVGEAEVMADA 69 (353)
T ss_pred CCCceEEEeHHHHHHHHHHHHHHHHHc--------CCccccccccccCHHHHHHHHhCCC---CCEEEeeHHHHHHHHHC
Confidence 369999999999999999999988752 3678889999999999999999995 59999999999999999
Q ss_pred cCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCC
Q 005135 206 LCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGE 285 (712)
Q Consensus 206 G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~ 285 (712)
|+ +.|++.++......++.+....+. .++.++|||+++++.|.+++++.+++.+|.|||+++
T Consensus 70 G~----~~i~i~~~~~~~~~~~~l~~l~~~-~~~~~~vds~~~l~~L~~~a~~~~~~~~V~l~vd~G------------- 131 (353)
T cd06820 70 GL----SDIFIAYPIVGRQKLERLRALAER-VTLSVGVDSAEVARGLAEVAEGAGRPLEVLVEVDSG------------- 131 (353)
T ss_pred CC----CeEEEECCcCCHHHHHHHHHHhcC-CCEEEEECCHHHHHHHHHHHHhcCCeeEEEEEECCC-------------
Confidence 85 347777776544444433322112 346899999999999999999888888999999742
Q ss_pred CCCCCCCH-HHHHHHHHHHHHcCCCCceeEEEEecCCCCCC---hHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCc
Q 005135 286 KGKFGLTT-TQILRVVKKLEVAEMLDCFQLLHFHIGSQIPS---TALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGI 361 (712)
Q Consensus 286 ~SKFGl~~-~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d---~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv 361 (712)
.+|||+.+ +++.++++.+.+.+.|+ +.|||+|.|++... ...+.+.++.+.++..++++.|..+.+|++||+..+
T Consensus 132 ~~R~Gv~~~~~~~~l~~~i~~~~~l~-l~Gi~~h~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~vs~Ggs~t~ 210 (353)
T cd06820 132 MNRCGVQTPEDAVALARAIASAPGLR-FRGIFTYPGHSYAPGALEEAAADEAEALLAAAGILEEAGLEPPVVSGGSTPTL 210 (353)
T ss_pred CCcCCCCChHHHHHHHHHHHhCCCcE-EEEEEecCCccCChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEeCcChhh
Confidence 38999988 89999999999888888 99999999986422 345667777888888888888999999999999877
Q ss_pred CcC
Q 005135 362 DYD 364 (712)
Q Consensus 362 ~Y~ 364 (712)
.+.
T Consensus 211 ~~~ 213 (353)
T cd06820 211 WRS 213 (353)
T ss_pred hhh
Confidence 664
No 32
>cd06813 PLPDE_III_DSD_D-TA_like_2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 2. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.82 E-value=1.5e-18 Score=192.11 Aligned_cols=213 Identities=16% Similarity=0.157 Sum_probs=166.0
Q ss_pred CCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHH-cCCCCccceEecCHHHHHHHHH
Q 005135 126 LQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVK-FGSQFRFGLEAGSKPELLLAMS 204 (712)
Q Consensus 126 ~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~-~G~~~~~GlEvaS~~EL~~Al~ 204 (712)
++||++++|++.|++|++++++.+. +.++.|++|+|+++.+++.+.+ .|. -|+.|+|.+|+..+++
T Consensus 9 ~~tP~~viDldal~~N~~~l~~~~~----------~~~ir~~vKa~~~~~ll~~~l~~~G~---~g~~vas~~Ea~~l~~ 75 (388)
T cd06813 9 LDAPFAFVDLDALDANAADLVRRAG----------GKPIRVASKSVRCRALLRRVLAAPGF---QGVMAFTLAEALWLAR 75 (388)
T ss_pred CCCCEEEEEHHHHHHHHHHHHHHcC----------CCcEEEEeccccCHHHHHHHHhhcCC---ceEEEecHHHHHHHHH
Confidence 8999999999999999999998763 2578999999999999998887 475 4999999999999999
Q ss_pred hcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCC
Q 005135 205 CLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSG 284 (712)
Q Consensus 205 ~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg 284 (712)
+|+ +.|++.++.++.++++.++...+.+.++.++|||.++|+.|.+.+++.+++.+|.|||+++....| ..+|.
T Consensus 76 aG~----~~ILl~~p~~~~~~l~~~~~~~~~~~~i~~~Vds~~~l~~l~~~a~~~~~~~~V~l~IDtGm~R~G--~~~G~ 149 (388)
T cd06813 76 QGF----DDILVAYPSVDRAALRELAADPKLGATITLMVDSVEHLDLLDAVAAPMRVEVRVCIDIDASLRFGG--LHFGV 149 (388)
T ss_pred cCC----CeEEEeCCCCCHHHHHHHHhhhccCCeEEEEEcCHHHHHHHHHHHHhcCCceEEEEEECCCccccc--cccCc
Confidence 984 468888898999989988863222345679999999999999999888888899999998654333 13466
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCC-C-CCChH----------------HHHHHHHHHHHHHHHHHHc
Q 005135 285 EKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGS-Q-IPSTA----------------LLTDGVGEAAQIYCELVRL 346 (712)
Q Consensus 285 ~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGS-q-i~d~~----------------~~~~ai~~~~~~~~~L~~~ 346 (712)
.+++|+ +.+++.++++.+++.+.++ +.|||.|.|+ + ..+.. .+.+..+...++.+.|++.
T Consensus 150 ~Rs~~~-~~~~~~~l~~~i~~~~~l~-l~Gi~th~g~~a~~~d~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~l~~~ 227 (388)
T cd06813 150 RRSPLH-TPAQALALAKAIAARPGLR-LVGLMGYEAQIAGVGDSVPGKRVKSAVIRLLKKRSIKELAERRAAVVAALRAE 227 (388)
T ss_pred CCCCCC-CHHHHHHHHHHHhcCCCcE-EEEEEEEchhhccCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678888 6788999999998888888 9999999876 2 23221 1111112223556666677
Q ss_pred CCCCcEEEEcCCCC
Q 005135 347 GANMQVIDIGGGLG 360 (712)
Q Consensus 347 G~~l~~IDIGGGlg 360 (712)
|.++.++| |||.+
T Consensus 228 g~~~~~vN-sgGt~ 240 (388)
T cd06813 228 GEDLEFVN-GGGTG 240 (388)
T ss_pred CCCCCEEe-CCCch
Confidence 88899999 55544
No 33
>cd06821 PLPDE_III_D-TA Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme D-Threonine Aldolase. D-threonine aldolase (D-TA, EC 4.3.1.18) reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Its activity is present in several genera of bacteria but not in fungi. It requires PLP and a divalent cation such as Co2+, Ni2+, Mn2+, or Mg2+ as cofactors for catalytic activity and thermal stability. Members of this subfamily show similarity to bacterial alanine racemase (AR), a fold type III PLP-dependent enzyme which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on its similarity to AR, it is possible that low specificity D-TAs also form dimers in solution. Experimental data show that
Probab=99.81 E-value=2.1e-18 Score=188.74 Aligned_cols=207 Identities=11% Similarity=0.073 Sum_probs=166.2
Q ss_pred CCCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHH
Q 005135 125 GLQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMS 204 (712)
Q Consensus 125 g~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~ 204 (712)
.++||++++|.+.|++|++++++.++. ..++.+.+|+|..+.|++.+.+.|+ .|++|+|..|++.+++
T Consensus 6 ~~~tP~~~id~~~l~~Ni~~~~~~~~~---------~~~l~~~vKah~~~~i~~~~~~~G~---~~~~vas~~Ea~~~~~ 73 (361)
T cd06821 6 EIISPALAVYPDRIEENIRRMIRMAGD---------PQRLRPHVKTHKMAEIVRLQLEAGI---TKFKCATIAEAEMLAE 73 (361)
T ss_pred cCCCceEEEeHHHHHHHHHHHHHHHhc---------CCCccccchhhcCHHHHHHHHhcCC---CcEEEecHHHHHHHHH
Confidence 389999999999999999999998874 2367888999999999999999996 5999999999999999
Q ss_pred hcCCCCCCcEEEeCCC---CCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccc
Q 005135 205 CLCKGSPEALLVCNGF---KDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGS 281 (712)
Q Consensus 205 ~G~~~~p~~II~~ng~---K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~ 281 (712)
.|+ + .+++..+. +..+.++++... .+.++.++|||+++++.+.+.+++.+++.+|.|||+++
T Consensus 74 ~G~--~--~ill~~~~~~~~~~~~~~l~~~~--~~~~~~~~Vds~~~l~~l~~~a~~~~~~~~V~l~Vd~G--------- 138 (361)
T cd06821 74 AGA--P--DVLLAYPLVGPNIERFLELAKKY--PGTRFSALVDDLEAAEALSAAAGSAGLTLSVLLDVNTG--------- 138 (361)
T ss_pred cCC--C--eEEEeCCCCHHHHHHHHHHHhhC--CCCeEEEEECCHHHHHHHHHHHHHcCCeEEEEEEeCCC---------
Confidence 985 3 45555432 333344444321 12345789999999999999998888888899999742
Q ss_pred cCCCCCCCCCCHH-HHHHHHHHHHHcCCCCceeEEEEecCCC-CCC----hHHHHHHHHHHHHHHHHHHHcCCCCcEEEE
Q 005135 282 TSGEKGKFGLTTT-QILRVVKKLEVAEMLDCFQLLHFHIGSQ-IPS----TALLTDGVGEAAQIYCELVRLGANMQVIDI 355 (712)
Q Consensus 282 tgg~~SKFGl~~~-e~~~~l~~l~~~~~L~~l~GLHfHiGSq-i~d----~~~~~~ai~~~~~~~~~L~~~G~~l~~IDI 355 (712)
.+|||+.++ ++.++++.+++.+.|+ +.|||+|.|++ ..+ .+.+.+.++.+.++...+++.|..+.++++
T Consensus 139 ----~~R~Gv~~~~~~~~l~~~i~~~~~l~-l~Gl~~~~gh~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~v~~ 213 (361)
T cd06821 139 ----MNRTGIAPGEDAEELYRAIATLPGLV-LAGLHAYDGHHRNTDLAEREAAADAAYKPVLALREALEAAGLPVPELVA 213 (361)
T ss_pred ----CCcCCCCChHHHHHHHHHHhhCCCce-EeeEEeecCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
Confidence 269999887 7999999998888888 99999999985 334 345667777788888888888889999999
Q ss_pred cCCCCcCc
Q 005135 356 GGGLGIDY 363 (712)
Q Consensus 356 GGGlgv~Y 363 (712)
||.-+..+
T Consensus 214 GgS~~~~~ 221 (361)
T cd06821 214 GGTPSFPF 221 (361)
T ss_pred CCCcchhh
Confidence 98766554
No 34
>PF00278 Orn_DAP_Arg_deC: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; InterPro: IPR022643 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region []. This entry represents the C-terminal region of the Orn/DAP/Arg decarboxylases.; GO: 0003824 catalytic activity; PDB: 1TWI_B 1TUF_A 3MT1_A 3N2B_C 2O0T_A 1HKW_A 1HKV_A 3VAB_A 3N2O_A 7ODC_A ....
Probab=99.79 E-value=1.5e-19 Score=166.34 Aligned_cols=94 Identities=34% Similarity=0.480 Sum_probs=77.4
Q ss_pred cccccccccccccchhhhcCCcceeeecCCCCCCCCeeeEeecccccCCCccccccCCCcccCCccccCCCCCCCcccEE
Q 005135 476 RTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYL 555 (712)
Q Consensus 476 ~~Y~~N~Svf~SlpD~w~i~q~fPI~pl~rl~e~p~~~~~l~G~TCdS~D~I~~fi~~~~~LPl~~l~~G~~~~~~~d~L 555 (712)
++|++|.|+|++ ++.|..++.||+.++++..+.+..+++|+|+||++.|+|.+ +..||. ++++| |||
T Consensus 23 ~~~~vd~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GptC~~~D~i~~----~~~lP~-~l~~G-------D~l 89 (116)
T PF00278_consen 23 RWYYVDDGVYGS-FDPWLYDHQFPILPLSRPDEEPCYPSTIWGPTCDSGDVIAR----DVMLPK-ELEVG-------DWL 89 (116)
T ss_dssp EEEEESS-TTTC-CHHHHHS----EEEESSTTTSTEEEEEEEESSSSTTSEEEE----EEEEES-TTTTT--------EE
T ss_pred eEEEEeCChhhC-hHHHhhCcCceeeeeccccccCcEEEEEEECCcCCCceEee----eccCCC-CCCCC-------CEE
Confidence 567899999999 99999999999999987777888999999999999999986 445553 78999 999
Q ss_pred EeecccchhccccCCCCCCCCCcEEEE
Q 005135 556 GMFLGGAYEEALGGVHNLFGGPSVVRV 582 (712)
Q Consensus 556 ~~~~~GAYq~~m~s~fNlf~~p~~V~V 582 (712)
+|+++|||+.+++++||+|+.|++|+|
T Consensus 90 ~f~~~GAYt~~~~~~Fn~~~~p~~v~v 116 (116)
T PF00278_consen 90 VFENMGAYTISLSSNFNGFPRPAEVYV 116 (116)
T ss_dssp EESS-SSSSGGGSBCGGGT-SCEEEEE
T ss_pred EEecCcccchhhCccccCCCCCCEEEC
Confidence 999999999999999999999999986
No 35
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=99.77 E-value=3.7e-17 Score=180.58 Aligned_cols=218 Identities=11% Similarity=-0.004 Sum_probs=170.9
Q ss_pred HHHHHHHhCCCCCCCCCCCCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccC-CcHHHHHHHHHcCCC
Q 005135 108 LLKIVKKVSDPKSVGGLGLQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCN-QDRFVVEDIVKFGSQ 186 (712)
Q Consensus 108 l~el~~~~~~~~~~~~~g~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN-~~~~Vl~~l~~~G~~ 186 (712)
|.+.+-.+-++ | .+..++|++|.+.|++|++.+++.+++. +.+++|.+|+| .++.|++.+.+.|+
T Consensus 13 ~~~~a~~~~~~----g-~~~~~~yvIDl~~I~~N~~~l~~~~~~~--------~~~l~~vvKAna~~~~ia~~l~~~G~- 78 (382)
T cd06811 13 LIEAALTLHQS----G-AIPPDTYVIDLDQIEENARLLAETAEKY--------GIELYFMTKQFGRNPFLARALLEAGI- 78 (382)
T ss_pred HHHHHHHHHHc----C-CCCCCEEEecHHHHHHHHHHHHHHHhhC--------CCEEEEEEccCCCCHHHHHHHHHcCC-
Confidence 55555555444 1 2889999999999999999999998742 36899999999 69999999999994
Q ss_pred CccceEecCHHHHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEE
Q 005135 187 FRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIG 266 (712)
Q Consensus 187 ~~~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~Ig 266 (712)
-|++|+|..|+..++++|+ ++..|. ....++.++++.++. .++. .++|+|+++++.|.+.+++.+++.+|.
T Consensus 79 --~g~~vas~~Ea~~lr~aGi--~~~~I~-~l~~~~~~el~~~v~---~~~~-~i~V~s~~~l~~L~~~A~~~g~~~~V~ 149 (382)
T cd06811 79 --PGAVAVDFKEARALHEAGL--PLGHVG-HLVQIPRHQVPAVLA---MRPE-VITVYSLEKAREISDAAVELGRVQDVL 149 (382)
T ss_pred --CeEeEecHHHHHHHHHcCC--CHHhEE-EccCCCHHHHHHHHH---cCCC-EEEECCHHHHHHHHHHHHHcCCceEEE
Confidence 3899999999999999995 555555 334467888999887 3332 699999999999999999889889999
Q ss_pred EEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCCChH----HHHHHHHHHHHHHHH
Q 005135 267 ARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTA----LLTDGVGEAAQIYCE 342 (712)
Q Consensus 267 LRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~----~~~~ai~~~~~~~~~ 342 (712)
|||++... -..++ .+.|++++++.++++.+++.+.++ +.|||.| +++..+.. .+.+.++.+.++...
T Consensus 150 LrVdtg~~----ri~~g---~~~G~~~~e~~~~~~~i~~l~~l~-l~Githf-~~~~~d~~~~~~~~~~~~~~l~~~~~~ 220 (382)
T cd06811 150 LRVYGDED----TLYPG---QEGGFPLEELPAVLAAIKALPGIR-IAGLTSF-PCFLYDEEQGDIAPTPNLFTLLKAKEL 220 (382)
T ss_pred EEEECCCC----ccccC---ccceecHHHHHHHHHHHHcCCCcE-EEeEccc-chhhcccCcccccHHHHHHHHHHHHHH
Confidence 99997421 11222 345999999999999998888888 9999766 55433332 245567777777777
Q ss_pred HHHcCCCCcEEEEcC
Q 005135 343 LVRLGANMQVIDIGG 357 (712)
Q Consensus 343 L~~~G~~l~~IDIGG 357 (712)
+++.|.++++|++||
T Consensus 221 l~~~g~~~~~is~Gg 235 (382)
T cd06811 221 LEKRGIEILQLNAPS 235 (382)
T ss_pred HHHCCCCCeEEccCC
Confidence 877888999999985
No 36
>TIGR00492 alr alanine racemase. This enzyme interconverts L-alanine and D-alanine. Its primary function is to generate D-alanine for cell wall formation. With D-alanine-D-alanine ligase, it makes up the D-alanine branch of the peptidoglycan biosynthetic route. It is a monomer with one pyridoxal phosphate per subunit. In E. coli, the ortholog is duplicated so that a second isozyme, DadX, is present. DadX, a paralog of the biosynthetic Alr, is induced by D- or L-alanine and is involved in catabolism.
Probab=99.76 E-value=9.1e-17 Score=176.49 Aligned_cols=197 Identities=13% Similarity=0.090 Sum_probs=159.7
Q ss_pred EEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCC----cHHHHHHHHHcCCCCccceEecCHHHHHHHHHh
Q 005135 130 LIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQ----DRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSC 205 (712)
Q Consensus 130 l~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~----~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~ 205 (712)
.+.+|++.|++|++.+++.++. +.+++|.+|+|. ++.+++.+.+.|+ .+|+|+|..|+..++++
T Consensus 4 ~~~Idl~~l~~N~~~i~~~~~~---------~~~i~~vvKAnaYGhg~~~i~~~l~~~G~---~~~~vas~~Ea~~lr~~ 71 (367)
T TIGR00492 4 TVEIDLAALKHNLSAIRNHIGP---------KSKIMAVVKANAYGHGLIEVAKTLLQAGA---DYFGVANLEEAITLRKA 71 (367)
T ss_pred EEEEEHHHHHHHHHHHHHhcCC---------CCEEEEEEEcCCccCcHHHHHHHHHHCCC---CEEEECcHHHHHHHHhc
Confidence 3679999999999999988853 358999999998 5999999999995 48999999999999999
Q ss_pred cCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCC
Q 005135 206 LCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGE 285 (712)
Q Consensus 206 G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~ 285 (712)
|+ +++.+++ ++.. .++++.+++ . ++.++|||+++++.+.+.+++.+++.+|.|||++ |
T Consensus 72 G~--~~~ilvl-~~~~-~~~~~~~~~---~--~l~~~v~s~~~l~~l~~~a~~~~~~~~V~l~Vdt-----------G-- 129 (367)
T TIGR00492 72 GI--TAPILLL-GGFF-AEDLKILAA---W--DLTTTVHSVEQLQALEEALLKEPKRLKVHLKIDT-----------G-- 129 (367)
T ss_pred CC--CCCEEEE-eCCC-HHHHHHHHH---c--CCEEEECCHHHHHHHHHHHHHcCCceEEEEEeeC-----------C--
Confidence 85 4444454 5544 677888876 3 3579999999999999999888888899999973 3
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCC-ChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCC
Q 005135 286 KGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIP-STALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLG 360 (712)
Q Consensus 286 ~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~-d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlg 360 (712)
.+|||++++|+.++++++++.+.++.+.|||+|++++.. +.+.+.+.++...++...+.+.|.++.++++|.--+
T Consensus 130 m~R~Gi~~~e~~~~~~~i~~~~~l~~l~Gi~tH~~~~~~~~~~~~~~q~~~f~~~~~~l~~~g~~~~~~~~~nS~~ 205 (367)
T TIGR00492 130 MNRLGVKPDEAALFVQKLRQLKKFLELEGIFSHFATADEPKTGTTQKQIERFNSFLEGLKQQNIEPPFRHIANSAA 205 (367)
T ss_pred CCCCCCChHHHHHHHHHHHhCCCCCCceEEEcCCCCCCCCCChHHHHHHHHHHHHHHHHhhcCCCCCcEEccCCHH
Confidence 289999999999999888887766437899999998742 324667778888888888877788888898765433
No 37
>PRK00053 alr alanine racemase; Reviewed
Probab=99.69 E-value=3.8e-15 Score=163.51 Aligned_cols=197 Identities=14% Similarity=0.159 Sum_probs=157.7
Q ss_pred CcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCC----cHHHHHHHHHcCCCCccceEecCHHHHHHHH
Q 005135 128 LPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQ----DRFVVEDIVKFGSQFRFGLEAGSKPELLLAM 203 (712)
Q Consensus 128 tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~----~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al 203 (712)
.+.+++|.+.|++|++.+++.++. +.+++|.+|+|. ...|++.+.+.|+ .+|.|+|..|+...+
T Consensus 3 ~~~l~Idl~~l~~N~~~i~~~~~~---------~~~i~~vvKanaYghg~~~i~~~l~~~G~---~~~~vas~~Ea~~l~ 70 (363)
T PRK00053 3 PATAEIDLDALRHNLRQIRKHAPP---------KSKLMAVVKANAYGHGAVEVAKTLLEAGA---DGFGVATLEEALELR 70 (363)
T ss_pred CeEEEEeHHHHHHHHHHHHHhCCC---------CCEEEEEEeeccccCcHHHHHHHHHHCCC---CEEEECcHHHHHHHH
Confidence 367889999999999999998853 368999999998 5899999999996 489999999999999
Q ss_pred HhcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccC
Q 005135 204 SCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTS 283 (712)
Q Consensus 204 ~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tg 283 (712)
++|+ + ..|++.++....++++.+++ . ++.++|||+++++.|.+. +.+++.+|.|||+ ||
T Consensus 71 ~~G~--~-~~il~l~~~~~~~e~~~~~~---~--~i~~~v~s~~~l~~l~~~--~~~~~~~V~l~vd-----------tG 129 (363)
T PRK00053 71 EAGI--T-APILILGGFFPAEDLPLIIA---Y--NLTTAVHSLEQLEALEKA--ELGKPLKVHLKID-----------TG 129 (363)
T ss_pred hcCC--C-CCEEEEeCCCCHHHHHHHHH---c--CCEEEECCHHHHHHHHHh--ccCCCeEEEEEec-----------CC
Confidence 9985 3 35666666567778888775 3 347999999999999885 5677789999996 33
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCC-CChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcC
Q 005135 284 GEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQI-PSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGID 362 (712)
Q Consensus 284 g~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi-~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~ 362 (712)
.+|||++++++.++++.+++.+.++ +.|||+|+++.. .+.+...+.++...++..++.+.|. .++.+|+--++.
T Consensus 130 --~~R~Gi~~~e~~~~~~~i~~~~~l~-l~Gi~tH~~~~~~~~~~~~~~q~~~f~~~~~~l~~~g~--~~~h~~nS~~~~ 204 (363)
T PRK00053 130 --MHRLGVRPEEAEAALERLLACPNVR-LEGIFSHFATADEPDNSYTEQQLNRFEAALAGLPGKGK--PLRHLANSAAIL 204 (363)
T ss_pred --CCcCCCCHHHHHHHHHHHHhCCCCc-eEEEEecCCCCCCCCChHHHHHHHHHHHHHHHHhhcCC--ceEeccCCHHHh
Confidence 3799999999999999999888888 999999999864 3444556667777777777766565 467777765544
No 38
>PRK13340 alanine racemase; Reviewed
Probab=99.68 E-value=4.5e-15 Score=165.34 Aligned_cols=187 Identities=15% Similarity=0.124 Sum_probs=143.1
Q ss_pred cEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCC----cHHHHHHHHHcCCCCccceEecCHHHHHHHHH
Q 005135 129 PLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQ----DRFVVEDIVKFGSQFRFGLEAGSKPELLLAMS 204 (712)
Q Consensus 129 Pl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~----~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~ 204 (712)
+.+.+|++.|++|++.++++++. +.++.|.+|+|. ...|++.+.+.|+ -+++|+|..|+..+++
T Consensus 41 ~~l~Idl~ai~~N~~~i~~~~~~---------~~~i~~vvKAnaYG~G~~~va~~l~~~G~---~~~~Vas~~Ea~~lr~ 108 (406)
T PRK13340 41 AWLEISPGAFRHNIKTLRSLLAN---------KSKVCAVMKADAYGHGIELLMPSIIKANV---PCIGIASNEEARRVRE 108 (406)
T ss_pred eEEEEcHHHHHHHHHHHHHhCCC---------CCEEEEEEccccccccHHHHHHHHHHCCC---CEEEEccHHHHHHHHh
Confidence 56779999999999999998863 358999999998 4568899989886 4899999999999999
Q ss_pred hcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCC
Q 005135 205 CLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSG 284 (712)
Q Consensus 205 ~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg 284 (712)
+|+ ++..+++ ++. +.++++.+++ .+ +.++|+|+++++.|.+++++.+++.+|.|||++ +|
T Consensus 109 ~G~--~~~ilvl-~~~-~~~el~~~~~---~~--l~~~v~s~~~l~~l~~~a~~~~~~~~V~LkVDt-----------~G 168 (406)
T PRK13340 109 LGF--TGQLLRV-RSA-SPAEIEQALR---YD--LEELIGDDEQAKLLAAIAKKNGKPIDIHLALNS-----------GG 168 (406)
T ss_pred CCC--CCCEEEE-CCC-CHHHHHHHHH---cC--CEEEECCHHHHHHHHHHHHHcCCceEEEEEECC-----------CC
Confidence 995 5544455 554 7788999876 33 468999999999999999888888899999973 22
Q ss_pred CCCCCCCCHHHHHH--HHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHH-HcCCCCc
Q 005135 285 EKGKFGLTTTQILR--VVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELV-RLGANMQ 351 (712)
Q Consensus 285 ~~SKFGl~~~e~~~--~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~-~~G~~l~ 351 (712)
.+|||+.+++..+ .+..+++.+.++ +.|||+|.++. |.....+.+++..++..++. +.|..+.
T Consensus 169 -m~R~G~~~~e~~~~~~~~~l~~~~~l~-l~Gi~tH~a~a--d~~~~~~q~~~f~~~~~~l~~~~g~~~~ 234 (406)
T PRK13340 169 -MSRNGLDMSTARGKWEALRIATLPSLG-IVGIMTHFPNE--DEDEVRWKLAQFKEQTAWLIGEAGLKRE 234 (406)
T ss_pred -CCCcCCChhhhhHHHHHHHHHhCCCcc-EEEEEEECCCC--CcHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 6899999865433 333677778888 99999999973 43344455556555555553 3355444
No 39
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=99.64 E-value=2.3e-14 Score=147.01 Aligned_cols=196 Identities=12% Similarity=0.105 Sum_probs=153.3
Q ss_pred EcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHhcCCCCCC
Q 005135 133 RLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPE 212 (712)
Q Consensus 133 ~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~G~~~~p~ 212 (712)
-+.+.|++|++.+++.+... ..+.++.--+|++....|.+. .+.|+ -+|-|++..|.......+. .+.
T Consensus 3 ~~~~~l~~Ni~~~~~~~~~~------~~~~~l~avvK~hg~~~va~~-~~~G~---~~f~va~l~Ea~~lr~~~~--~~~ 70 (222)
T cd00635 3 ENLEEVRERIAAAAERAGRD------PDEVTLVAVSKTVPAEAIREA-IEAGQ---RDFGENRVQEALDKAEELP--DPD 70 (222)
T ss_pred HHHHHHHHHHHHHHHHcCCC------cCCeEEEEEECCCCHHHHHHH-HHcCC---cccCCCcHHHHHHHHHHcc--CCC
Confidence 35778999999998766200 013567777999877777765 57886 4789999999988887742 222
Q ss_pred -cEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCC
Q 005135 213 -ALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGL 291 (712)
Q Consensus 213 -~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl 291 (712)
.+++-++. ..+++..+++. .++.++|||+++++.|.+.+++.+++.+|.|||+ ||+..+|||+
T Consensus 71 ~~~~llg~~-~~~~~~~~~~~----~~~~~~v~s~~~l~~l~~~a~~~~~~~~v~lkvd-----------tG~~~~R~G~ 134 (222)
T cd00635 71 IEWHFIGHL-QTNKVKYAVRL----FDLIHSVDSLKLAEELNKRAEKEGRVLDVLVQVN-----------IGGEESKSGV 134 (222)
T ss_pred ceEEEECcc-ccccHHHHHhh----CCEEEEcCCHHHHHHHHHHHHhcCCCCcEEEEEe-----------cCCCCCCCCC
Confidence 23332332 34556666541 2467899999999999999988888899999997 4555699999
Q ss_pred CHHHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHc-CCCCcEEEEcCC
Q 005135 292 TTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRL-GANMQVIDIGGG 358 (712)
Q Consensus 292 ~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~-G~~l~~IDIGGG 358 (712)
+++++.++++.+++.+.++ +.|+|+| +|+..+.+.+.++++.+.++...+++. |+.+++||+||.
T Consensus 135 ~~~~~~~~~~~i~~~~~l~-~~Gi~sh-~s~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~is~G~t 200 (222)
T cd00635 135 APEELEELLEEIAALPNLR-IRGLMTI-APLTEDPEEVRPYFRELRELRDELGAKGGVNLKELSMGMS 200 (222)
T ss_pred CHHHHHHHHHHHHcCCCCc-EEEEEEE-CCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCCEEECccc
Confidence 9999999999999888888 9999999 777888899999999999999999887 499999999973
No 40
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase. This family includes eukaryotic D-serine dehydratases (DSD), cryptic DSDs from bacteria, D-threonine aldolases (D-TA), low specificity D-TAs, and similar uncharacterized proteins. DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Members of this family are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity to AR, it is poss
Probab=99.60 E-value=7.3e-14 Score=152.16 Aligned_cols=196 Identities=9% Similarity=0.052 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHhcCCCCCCcEEEe
Q 005135 138 LRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVC 217 (712)
Q Consensus 138 L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~G~~~~p~~II~~ 217 (712)
|++|++++++.+.. .+.++.+.+|++..+.|++.+.+.|+ .|+.|+|..|++.++++|+ ..|++.
T Consensus 2 l~~Ni~~~~~~~~~--------~~~~l~~vvKah~~~~v~~~l~~~G~---~~~~vat~~Ea~~l~~~G~----~~Ili~ 66 (345)
T cd07376 2 LEANISRMAARARA--------SGVRLRPHVKTHKSPELAQRQLAAGA---RGVTVATLAEAETFAEAGV----KDILMA 66 (345)
T ss_pred hHHHHHHHHHHHHH--------cCCccccccchhcCHHHHHHHHhCCC---CcEEEecHHHHHHHHHcCC----CeEEEE
Confidence 78999999998843 24678888999999999999999995 4999999999999999983 468888
Q ss_pred CCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHH
Q 005135 218 NGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQIL 297 (712)
Q Consensus 218 ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~ 297 (712)
++.++.+.++.++...+.+.++.++|||+++++.|.+.+++.+++.+|.|+|+. | .+|+|+++++..
T Consensus 67 ~~~~~~~~~~~~~~l~~~~~~i~~~Vds~~~l~~l~~~a~~~~~~~~V~l~ID~-----------G--~~R~Gv~~~~~~ 133 (345)
T cd07376 67 YPLVGPAAIARLAGLLRQEAEFHVLVDSPEALAALAAFAAAHGVRLRVMLEVDV-----------G--GHRSGVRPEEAA 133 (345)
T ss_pred CCcCCHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCeeEEEEEeCC-----------C--CCcCCCCCcHHH
Confidence 887766667766543221245678999999999999999888888888888862 3 267899865443
Q ss_pred HHHH--HHHHcCCCCceeEEEEecCCC-CCC-----hHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCc
Q 005135 298 RVVK--KLEVAEMLDCFQLLHFHIGSQ-IPS-----TALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDY 363 (712)
Q Consensus 298 ~~l~--~l~~~~~L~~l~GLHfHiGSq-i~d-----~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y 363 (712)
.+.. .+++.+.|+ +.|||+|.|+. -.+ .....+.++...++...++ .|.++.++++||.-.+.+
T Consensus 134 ~l~~~~~i~~~~~l~-l~Gl~~h~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~g~~~~~vs~G~S~~~~~ 205 (345)
T cd07376 134 ALALADAVQASPGLR-LAGVMAYEGHIYGAGGAREGAQARDQAVAAVRAAAAAAE-RGLACPTVSGGGTPTYQL 205 (345)
T ss_pred HHHHHHHhccCCCeE-EeEEEeecchhccCCCHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCEEEeCCCcChhh
Confidence 3222 223567788 99999999953 111 1134445555555555554 488888999998766543
No 41
>cd06826 PLPDE_III_AR2 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme, Alanine Racemase 2. This subfamily is composed of bacterial alanine racemases (EC 5.1.1.1) with similarity to Yersinia pestis and Vibrio cholerae alanine racemase (AR) 2. ARs catalyze the interconversion between L- and D-alanine, an essential component of the peptidoglycan layer of bacterial cell walls. These proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=99.55 E-value=4.9e-13 Score=147.11 Aligned_cols=196 Identities=9% Similarity=0.001 Sum_probs=146.7
Q ss_pred EEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHH----HHHHHHHcCCCCccceEecCHHHHHHHHHh
Q 005135 130 LIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRF----VVEDIVKFGSQFRFGLEAGSKPELLLAMSC 205 (712)
Q Consensus 130 l~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~----Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~ 205 (712)
.+..|++.|++|++.+++.++. +.++.+.+|+|...+ |++.+.+.|+ -+|.|+|..|....+++
T Consensus 3 ~l~Idl~al~~N~~~i~~~~~~---------~~~i~~vvKAnAYGhG~~~va~~l~~~g~---~~f~Vas~~Ea~~lr~~ 70 (365)
T cd06826 3 WLEISTGAFENNIKLLKKLLGG---------NTKLCAVMKADAYGHGIALVMPSIIAQNI---PCVGITSNEEARVVREA 70 (365)
T ss_pred EEEEEHHHHHHHHHHHHHhCCC---------CCEEEEEEEeccccccHHHHHHHHHHCCC---CEEEEccHHHHHHHHhc
Confidence 4679999999999999988763 358999999997644 8888889886 58999999999999999
Q ss_pred cCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCC
Q 005135 206 LCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGE 285 (712)
Q Consensus 206 G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~ 285 (712)
|+ ++..+++ + .+++++++.+++ .++.++|+|+++++.|.+++++.+++.+|.|||++. |
T Consensus 71 Gi--~~~ilvl-~-~~~~~e~~~~i~-----~~i~~~v~s~~~l~~l~~~a~~~~~~~~v~LkvDt~----------G-- 129 (365)
T cd06826 71 GF--TGKILRV-R-TATPSEIEDALA-----YNIEELIGSLDQAEQIDSLAKRHGKTLPVHLALNSG----------G-- 129 (365)
T ss_pred CC--CCCEEEE-e-CCCHHHHHHHHH-----cCCEEEECCHHHHHHHHHHHHHcCCceEEEEEECCC----------C--
Confidence 95 5444455 3 467888999887 235699999999999999998888888999999631 2
Q ss_pred CCCCCCCHHH--HHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHH-HHcCCCC--cEEEEcCCCC
Q 005135 286 KGKFGLTTTQ--ILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCEL-VRLGANM--QVIDIGGGLG 360 (712)
Q Consensus 286 ~SKFGl~~~e--~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L-~~~G~~l--~~IDIGGGlg 360 (712)
-+|||+.+++ +.+++..+.+.+.++ +.|+|.|.++.-. ....+.+++..++...+ .+.|... .++.++.-.+
T Consensus 130 m~R~Gi~~~~~~~~~~~~~~~~~~~l~-l~Gi~tH~a~ad~--~~~~~q~~~f~~~~~~~~~~~g~~~~~~~~h~~nSa~ 206 (365)
T cd06826 130 MSRNGLELSTAQGKEDAVAIATLPNLK-IVGIMTHFPVEDE--DDVRAKLARFNEDTAWLISNAKLKREKITLHAANSFA 206 (365)
T ss_pred CCCCCCCcchhhHHHHHHHHHHCCCCc-EEEEEEeCCCCCc--hHHHHHHHHHHHHHHHHHHhcCCCCCcCeEEeeCCHH
Confidence 3899999743 567777888888888 9999999988532 22234444444444444 3335433 3566655544
Q ss_pred c
Q 005135 361 I 361 (712)
Q Consensus 361 v 361 (712)
+
T Consensus 207 ~ 207 (365)
T cd06826 207 T 207 (365)
T ss_pred H
Confidence 4
No 42
>cd06817 PLPDE_III_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Eukaryotic D-Serine Dehydratase. This subfamily is composed of chicken D-serine dehydratase (DSD, EC 4.3.1.18) and similar eukaryotic proteins. Chicken DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. It is a fold type III PLP-dependent enzyme with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Experimental data suggest that chicken DSD also exists as dimers. Sequence comparison and biochemical experiments show that chicken DSD is distinct from the ubiquitous bacterial DSDs coded by dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PL
Probab=99.49 E-value=9.4e-12 Score=137.96 Aligned_cols=209 Identities=12% Similarity=0.069 Sum_probs=155.5
Q ss_pred CCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHh
Q 005135 126 LQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSC 205 (712)
Q Consensus 126 ~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~ 205 (712)
+.||++++|.+.|++|++++++..+.+ +.++.-.+|+...+.|.+.+.+.|+.+ .|+-|++..|.+...+.
T Consensus 4 l~tP~l~Idl~al~~Ni~~m~~~~~~~--------~~~l~phvKaHg~~~ia~~~~~~Ga~~-~~~~Vatl~EA~~lr~~ 74 (389)
T cd06817 4 LPTPALVIDRAKFKRNCERMLQRAKAL--------GVKFRPHVKTHKTLEGTRLQLGEGRPS-RGIVVSTLAEAEFLLPL 74 (389)
T ss_pred CCCCeEEEEHHHHHHHHHHHHHHHHHc--------CCceeeeecCcCCHHHHHHHhhCCCCc-cCEEEecHHHHHHHHHh
Confidence 889999999999999999999877642 234444599999999999999988522 38999999999999999
Q ss_pred cCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHH-HHhcCCCceEEEEEeeCCCCCCCccccCC
Q 005135 206 LCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEI-SKKLNVRPVIGARAKLRTKHSGHFGSTSG 284 (712)
Q Consensus 206 G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~-a~~~g~~~~IgLRVn~~~~~~~~~~~tgg 284 (712)
|+..+-+.|++.++. ..+.++.++...+..-++.+.|||.+.++.+.+. +++.+.+.+|.|.|+ +|
T Consensus 75 G~~~~I~dilla~~~-~~~~~~~l~~l~~~~~~i~~~Vds~~~l~~l~~~~a~~~g~~~~V~lkvD-----------tG- 141 (389)
T cd06817 75 GEEGRVDDILYGLPV-PPSKLPRLAELSKKLGHLRVMVDNPEQLDFLEQFQPLKSGKKWSVFIKVD-----------CG- 141 (389)
T ss_pred ccccccccEEEECCC-CHHHHHHHHHHHhhcCceEEEECCHHHHHHHHHHHhhccCCceEEEEEEc-----------CC-
Confidence 863211347777776 5567777666322111367999999999999988 776777777777775 33
Q ss_pred CCCCCCCCH--HHHHHHHHHHHH-cCCCCceeEEEEecCC--CCCChHHHHHHHH----HHHHHHHHHHH-cCCCCcEEE
Q 005135 285 EKGKFGLTT--TQILRVVKKLEV-AEMLDCFQLLHFHIGS--QIPSTALLTDGVG----EAAQIYCELVR-LGANMQVID 354 (712)
Q Consensus 285 ~~SKFGl~~--~e~~~~l~~l~~-~~~L~~l~GLHfHiGS--qi~d~~~~~~ai~----~~~~~~~~L~~-~G~~l~~ID 354 (712)
-.|.|+.+ +++.++++.+.+ .+.|+ +.|++.|.|. .+.+.+..++.++ .+.++...|++ .|.+..+|.
T Consensus 142 -m~R~Gv~~~~~~~~~l~~~i~~~~~~L~-l~Gi~tH~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~g~~~~~vs 219 (389)
T cd06817 142 -THRAGVPPESEDAKELIQKLEKASEAVE-LFGFYSHAGHSYSSRSAEDAKEVLREEIEAVLTAAKKLKSIQGDRKLTLS 219 (389)
T ss_pred -CCcCCCCCChHHHHHHHHHHHhhCCCcE-EEEEEEeCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 36789975 458888998888 88888 9999999997 2455555554433 44445555565 788899999
Q ss_pred EcCC
Q 005135 355 IGGG 358 (712)
Q Consensus 355 IGGG 358 (712)
+||-
T Consensus 220 ~GgT 223 (389)
T cd06817 220 VGAT 223 (389)
T ss_pred eCCC
Confidence 8874
No 43
>cd06827 PLPDE_III_AR_proteobact Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=99.49 E-value=1.8e-12 Score=142.15 Aligned_cols=155 Identities=15% Similarity=0.104 Sum_probs=127.0
Q ss_pred EEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCC----cHHHHHHHHHcCCCCccceEecCHHHHHHHHHh
Q 005135 130 LIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQ----DRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSC 205 (712)
Q Consensus 130 l~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~----~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~ 205 (712)
-+.+|++.|++|++.+++.++. .++.+.+|+|. .+.|++.+.+ . -+|.|+|..|...++++
T Consensus 3 ~~~Idl~~l~~N~~~l~~~~~~----------~~l~~vvKanaYGhG~~~ia~~l~~-~----~~f~Vas~~Ea~~lr~~ 67 (354)
T cd06827 3 RATIDLAALRHNLRLVRELAPN----------SKILAVVKANAYGHGLVRVAKALAD-A----DGFAVACIEEALALREA 67 (354)
T ss_pred EEEEEHHHHHHHHHHHHhhCCC----------CeEEEEEeeccccCCHHHHHHHHHc-C----CEEEEccHHHHHHHHhC
Confidence 3579999999999999987752 57899999997 6999998887 4 48999999999999999
Q ss_pred cCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCC
Q 005135 206 LCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGE 285 (712)
Q Consensus 206 G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~ 285 (712)
|+ +++.+++.++.+. ++++.+++ .++.++|+|+++++.+.+.+ .+++.+|.|+|++ |
T Consensus 68 G~--~~~ilvl~~~~~~-~~~~~~~~-----~~l~~~v~s~~~l~~l~~~~--~~~~~~v~l~vDt-----------G-- 124 (354)
T cd06827 68 GI--TKPILLLEGFFSA-DELPLAAE-----YNLWTVVHSEEQLEWLEQAA--LSKPLNVWLKLDS-----------G-- 124 (354)
T ss_pred CC--CCCEEEEECCCCH-HHHHHHHH-----cCCEEEECCHHHHHHHHHhc--CCCCeEEEEEeeC-----------C--
Confidence 95 5555565555454 67887765 34579999999999998876 3566788999863 3
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCC
Q 005135 286 KGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQI 323 (712)
Q Consensus 286 ~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi 323 (712)
-+|||+.++++.++++.+++.+.++ +.|+|.|.++.-
T Consensus 125 m~R~Gi~~~e~~~~~~~i~~~~~l~-l~Gi~tH~a~ad 161 (354)
T cd06827 125 MHRLGFSPEEYAAAYQRLKASPNVA-SIVLMTHFACAD 161 (354)
T ss_pred cCCCCCCHHHHHHHHHHHHhCCCce-EEEEEeeccCCC
Confidence 4899999999999999988888888 999999999863
No 44
>cd06814 PLPDE_III_DSD_D-TA_like_3 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 3. This subfamily is composed of uncharacterized bacterial proteins with similarity to eukaryotic D-serine dehydratases (DSD) and D-threonine aldolases (D-TA). DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. DSD and D-TA are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on their similarity to AR, it is possible mem
Probab=99.48 E-value=7.2e-12 Score=138.50 Aligned_cols=209 Identities=11% Similarity=0.099 Sum_probs=147.9
Q ss_pred CCCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHH-HcCCCCccceEecCHHHHHHHH
Q 005135 125 GLQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIV-KFGSQFRFGLEAGSKPELLLAM 203 (712)
Q Consensus 125 g~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~-~~G~~~~~GlEvaS~~EL~~Al 203 (712)
++.||.+++|++.|++|++++++..+. +.++.-.+|+|....+++... +.|+ -|+-|++..|.+...
T Consensus 6 ~l~TP~l~IDl~al~~Ni~~m~~~~~~---------g~~lrphvKa~ky~~~~~~~l~~~Ga---~g~~vat~~Eae~l~ 73 (379)
T cd06814 6 GIGEPTLLLDKDRLDHNIDLLREHLAG---------SLAYRIVAKSLPSPPLLRHIMKRAGT---RRLMVFHQPFLNAVA 73 (379)
T ss_pred CCCCCEEEEEHHHHHHHHHHHHHhhCC---------CCcEEEEeccccCHHHHHHHHhhCCC---CEEEEecHHHHHHHH
Confidence 589999999999999999999987652 234444599999999999877 6786 599999999998755
Q ss_pred HhcCCCCCCcEEEeCCCCCHHHHHHHHH--hc---cCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCC
Q 005135 204 SCLCKGSPEALLVCNGFKDAGYITLALL--AR---KLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGH 278 (712)
Q Consensus 204 ~~G~~~~p~~II~~ng~K~~e~I~~Al~--~~---~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~ 278 (712)
+.+ ....|++.++. ..+.+...+. .+ ....++.++|||.++++.+.+.+++.+.+.+|.|.|+
T Consensus 74 ~~~---~~~dILl~~p~-~~~~~~r~~~~l~~~~~~~~~~l~~~Vds~e~l~~l~~~a~~~g~~l~V~lkVD-------- 141 (379)
T cd06814 74 KAF---PDADILLGKPM-PVAAAARFYRQLTGSAFRPARQLQWLIDTPERLAQYRALARSLGLTLRINLELD-------- 141 (379)
T ss_pred hcC---CCcCeEEeCCC-CcHHHHHHHhhccccccchhcCEEEEECCHHHHHHHHHHHHHcCCceEEEEEeC--------
Confidence 554 22457788775 2333333221 11 1235678999999999999999888777777777764
Q ss_pred ccccCCCCCCCCCCHH-HHHHHHHHHHHcCCCCceeEEEEecCC--CCCCh---HHHHHHHH----HHHHHHHHHHHcCC
Q 005135 279 FGSTSGEKGKFGLTTT-QILRVVKKLEVAEMLDCFQLLHFHIGS--QIPST---ALLTDGVG----EAAQIYCELVRLGA 348 (712)
Q Consensus 279 ~~~tgg~~SKFGl~~~-e~~~~l~~l~~~~~L~~l~GLHfHiGS--qi~d~---~~~~~ai~----~~~~~~~~L~~~G~ 348 (712)
|| -.|.|+.++ ++.++++.+.+.+.++ +.||+.|-|. ++.+. +...+.+. .+.+....+...|+
T Consensus 142 ---tG--m~R~Gv~~~~~~~~l~~~i~~~~~l~-~~Gi~ty~gh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 215 (379)
T cd06814 142 ---VG--LHRGGFADPQTLPKALTAIDAPPRLR-FSGLMGYEPHVAKLPGLISPAKARAAAMARYQAFVALARAHLGAHT 215 (379)
T ss_pred ---CC--CCCCCCCCHHHHHHHHHHHHhCCCce-EEEEEEEccccccCCCcccHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 33 257899765 6889999998888888 9999999987 34433 33332222 22333333334489
Q ss_pred CCcEEEEcCCCCcCc
Q 005135 349 NMQVIDIGGGLGIDY 363 (712)
Q Consensus 349 ~l~~IDIGGGlgv~Y 363 (712)
+..+|+.||-=-..+
T Consensus 216 ~~~~vs~GgTpT~~~ 230 (379)
T cd06814 216 QKLTLNTGGSPTYRL 230 (379)
T ss_pred CccEEecCCCcceEE
Confidence 999999887543343
No 45
>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=99.33 E-value=1.3e-10 Score=127.50 Aligned_cols=196 Identities=13% Similarity=0.058 Sum_probs=147.0
Q ss_pred CcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccC-CcHHHHHHHHHcCCCCccceEecCHHHHHHHHHhc
Q 005135 128 LPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCN-QDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCL 206 (712)
Q Consensus 128 tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN-~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~G 206 (712)
.|.+..|.+.|++|++.+++..+. .+.++..-+|+| ....+++.+.+.|+ -+|-|++..|.....+.|
T Consensus 1 ~P~l~Idl~al~~Ni~~i~~~~~~--------~~~~l~~vvKa~hg~~~va~~l~~~G~---~~f~va~i~EA~~lr~~G 69 (353)
T cd06815 1 YPRLEINLSKIRHNAKVLVELCKS--------RGIEVTGVTKVVCGDPEIAEALLEGGI---THLADSRIENLKKLKDLG 69 (353)
T ss_pred CCeEEEeHHHHHHHHHHHHHHHhh--------cCCEEEEEEcccCCCHHHHHHHHHcCC---CEEEeccHHHHHHHHhcC
Confidence 488999999999999999987652 135677779999 56899999999997 489999999999888888
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCC
Q 005135 207 CKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEK 286 (712)
Q Consensus 207 ~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~ 286 (712)
+ ....+++ ++. ..++++.+++ .+.+.+++|++.++.+.+.+++.+++.+|.|.|+ ||.
T Consensus 70 ~--~~~illl-g~~-~~~~~~~~~~-----~~~~~~i~s~~~~~~l~~~a~~~~~~~~vhlkvD-----------tGm-- 127 (353)
T cd06815 70 I--SGPKMLL-RIP-MLSEVEDVVK-----YADISLNSELETIKALSEEAKKQGKIHKIILMVD-----------LGD-- 127 (353)
T ss_pred C--CCCEEEE-CCC-CHHHHHHHHh-----hcceeccChHHHHHHHHHHHHHcCCccceEEEEe-----------cCC--
Confidence 4 3334444 433 3567887775 2335678899999999999988887788888885 343
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHH-cCCCCcEEEEcCC
Q 005135 287 GKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVR-LGANMQVIDIGGG 358 (712)
Q Consensus 287 SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~-~G~~l~~IDIGGG 358 (712)
+|+|+.++|+.++++.+++.+.|+ +.||+.|.++-- +.......+++..++.+.+.+ .|.++.++.+|+-
T Consensus 128 ~R~G~~~~e~~~~~~~i~~~~~l~-~~Gi~tH~~~~~-~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~S 198 (353)
T cd06815 128 LREGVLPEDLLDFVEEILKLPGIE-LVGIGTNLGCYG-GVLPTEENMGKLVELKEEIEKEFGIKLPIISGGNS 198 (353)
T ss_pred CccccCHHHHHHHHHHHhCCCCcE-EEecccCccccC-CCCCCHHHHHHHHHHHHHHHHhhCCCCCEEeccch
Confidence 799999989999999998888888 999999998631 211112334555556666655 4666667877753
No 46
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.
Probab=99.28 E-value=8.1e-10 Score=113.69 Aligned_cols=191 Identities=11% Similarity=0.051 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHHhHHhcC-CCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHH----HHHhc-CCCCCCc
Q 005135 140 DRLESLHSAFEFAIQTQG-YEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLL----AMSCL-CKGSPEA 213 (712)
Q Consensus 140 ~ni~~l~~af~~a~~~~~-y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~----Al~~G-~~~~p~~ 213 (712)
+|++.+.+....+.+..+ +..+.++.--+|+.....|.+.+ +.|+ -+|-|++..|... ....| . .
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~i~aVvKahG~~~v~~~~-~~G~---~~fgva~~~Ea~~k~~~Lr~~g~~-----~ 74 (224)
T cd06824 4 ENLAQVKQRIAQAAKQAGRDPSSVQLLAVSKTKPADAIREAY-AAGQ---RHFGENYVQEALEKIEALRDLQDI-----E 74 (224)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCeEEEEEECCCCHHHHHHHH-HcCC---cccCcChHHHHHHHHHHhccCCCe-----e
Confidence 444555444444333333 22336788889998888888885 7886 3688999999985 33332 1 1
Q ss_pred EEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCH
Q 005135 214 LLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTT 293 (712)
Q Consensus 214 II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~ 293 (712)
..+-++.-..+....+.. .+++.+|||.+.++.|.+.+.+.+++.+|.|.|+.+ +..+|||+++
T Consensus 75 ~~~lg~~~~~~~~~~~~~-----~~~~~~I~s~~~~~~l~~~a~~~g~~~~v~l~id~~-----------~Gm~R~Gi~~ 138 (224)
T cd06824 75 WHFIGPIQSNKTKLIAEN-----FDWVHSVDRLKIAKRLNDQRPAGLPPLNVCIQVNIS-----------GEDSKSGVAP 138 (224)
T ss_pred EEEEcCchhhhHHHHHhh-----CCEEEecCCHHHHHHHHHHHHhcCCCCcEEEEEEcC-----------CCCCCCCCCH
Confidence 112244322243555443 456799999999999999998888778888888743 3358999999
Q ss_pred HHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcC
Q 005135 294 TQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGG 357 (712)
Q Consensus 294 ~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGG 357 (712)
+++.++++.+...++++ +.|||+|.+ +..+.....+.++++.++..+++..+.++.++++|+
T Consensus 139 ~~~~~~~~~i~~~~~l~-l~Gl~tH~a-~~~~~~~q~~~f~~~~~~~~~l~~~~~~~~~is~gn 200 (224)
T cd06824 139 EDAAELAEAISQLPNLR-LRGLMAIPA-PTDDEAAQRAAFKRLRQLFDQLKKQYPDLDTLSMGM 200 (224)
T ss_pred HHHHHHHHHHhcCCCCc-EEEEEEeCC-CCCChHHHHHHHHHHHHHHHHHHhhCCCCCEEeCcC
Confidence 99999999998888898 999999954 466777677777888777777776677788999885
No 47
>PF01168 Ala_racemase_N: Alanine racemase, N-terminal domain; InterPro: IPR001608 Alanine racemase plays a role in providing the D-alanine required for cell wall biosynthesis by isomerising L-alanine to D-alanine. Proteins containing this domain are found in both prokaryotes and eukaryotes [,]. The molecular structure of alanine racemase from Bacillus stearothermophilus was determined by X-ray crystallography to a resolution of 1.9 A []. The alanine racemase monomer is composed of two domains, an eight-stranded alpha/beta barrel at the N terminus, and a C-terminal domain essentially composed of beta-strands. The pyridoxal 5'-phosphate (PLP) cofactor lies in and above the mouth of the alpha/beta barrel and is covalently linked via an aldimine linkage to a lysine residue, which is at the C terminus of the first beta-strand of the alpha/beta barrel. This domain is also found in the PROSC (proline synthetase co-transcribed bacterial homolog) family of proteins, which are not known to have alanine racemase activity.; PDB: 3KW3_A 1B54_A 1CT5_A 2ODO_B 2RJG_A 3B8V_D 2RJH_D 3B8T_D 3B8W_B 3B8U_A ....
Probab=99.26 E-value=4.9e-10 Score=113.99 Aligned_cols=188 Identities=13% Similarity=0.116 Sum_probs=146.2
Q ss_pred EcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCC-cHHHHHHHH-Hc-CCCCccceEecCHHHHHHHHHhcCCC
Q 005135 133 RLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQ-DRFVVEDIV-KF-GSQFRFGLEAGSKPELLLAMSCLCKG 209 (712)
Q Consensus 133 ~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~-~~~Vl~~l~-~~-G~~~~~GlEvaS~~EL~~Al~~G~~~ 209 (712)
+|.+.|++|++.+++..+. ..++.-.+|+|. ...+++.+. .. |+ -++-|++..|.....+.|
T Consensus 1 Idl~al~~Ni~~~~~~~~~---------~~~l~~vvK~~ayg~~~~~~~~~~~~g~---~~~~va~~~Ea~~lr~~g--- 65 (218)
T PF01168_consen 1 IDLDALRHNIRKIRQRAGP---------GTKLRAVVKANAYGHGIVRVAKALAEGI---DGFAVATLEEAEELREAG--- 65 (218)
T ss_dssp EEHHHHHHHHHHHHHHHCT---------TSEEEEE-HHHHHTTHHHHHHHHHHHTC---SEEEESSHHHHHHHHHTT---
T ss_pred CCHHHHHHHHHHHHHHcCC---------CCEEEEEEcCCCcCccHHHHHHHHhcCC---CEEEEeeHHHhhhHHhcC---
Confidence 4789999999999998821 245777799954 445555555 33 55 589999999999888876
Q ss_pred CCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCC
Q 005135 210 SPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKF 289 (712)
Q Consensus 210 ~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKF 289 (712)
..|++-++ -..++++.+++ .++.++|||++.++.|.+.+++.+.+.+|.|.|+. |. .|+
T Consensus 66 --~~il~l~~-~~~~~~~~~~~-----~~~~~~v~s~~~~~~l~~~~~~~~~~~~v~l~vdt-----------G~--~R~ 124 (218)
T PF01168_consen 66 --APILVLGP-IPPEELEELVE-----YNIIPTVDSLEQLEALSKAAKKQGKPLKVHLKVDT-----------GM--GRL 124 (218)
T ss_dssp --SEEEEESE-STGGGHHHHHH-----TTEEEEE-SHHHHHHHHHHHHHHTSTEEEEEEBES-----------SS--SSS
T ss_pred --CceEEEcC-CChhhHHHHhh-----CcEEEEEchhhHHHHHHHHHHHcCCceEEEEeecc-----------cc--ccc
Confidence 45766666 45566877776 25789999999999999999988888999998863 32 489
Q ss_pred CCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHH-HHHHHHHHHHHHHHcCCCCcEEEEcCC
Q 005135 290 GLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTD-GVGEAAQIYCELVRLGANMQVIDIGGG 358 (712)
Q Consensus 290 Gl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~-ai~~~~~~~~~L~~~G~~l~~IDIGGG 358 (712)
|+.++++.++++.+++.+.++ +.||+.|.++- .+.+...+ .++...++...+++.|.+..++.+|+-
T Consensus 125 G~~~~~~~~l~~~i~~~~~l~-l~Gl~th~~~~-d~~~~~~~~q~~~~~~~~~~l~~~~~~~~~~s~g~S 192 (218)
T PF01168_consen 125 GVRPEELEELAEAIKALPNLR-LEGLMTHFAHA-DDPDYTNQEQFERFRELAEALEKAGIPPPIVSMGNS 192 (218)
T ss_dssp SBECHHHHHHHHHHHHTTTEE-EEEEEEBGSST-TSSCHHHHHHHHHHHHHHHHHHHTTTTCSEEEEEBH
T ss_pred CCCHHHHHHHHHHHhcCCCce-EeeEecccccc-CCHHHHHHHHHHHHHHHHHHHHhccCCCceecCCCC
Confidence 999999999999999999998 99999999985 33333333 788888888888888888899999863
No 48
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=99.18 E-value=1.4e-08 Score=104.97 Aligned_cols=198 Identities=12% Similarity=0.070 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHHHhHHhcCCC-CcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHhcCCCCCCcEEE
Q 005135 138 LRDRLESLHSAFEFAIQTQGYE-ARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEALLV 216 (712)
Q Consensus 138 L~~ni~~l~~af~~a~~~~~y~-~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~G~~~~p~~II~ 216 (712)
+.+|++++++....+.+..+.. .+.++.=.+|+++ ...++.+.+.|+ -.|-+++..|+..-....-+.....+.+
T Consensus 4 ~~~~~~~i~~~i~~~~~~~~~~~~~~~l~aV~K~~~-~~~i~~l~~~G~---~~fg~~~~~Ea~~k~~~lr~~~~~~~~~ 79 (229)
T TIGR00044 4 IIHYLEDIKTKIEAANTHVNRNPSKVKLLAVSKTKP-ASAIQIAYDAGQ---RAFGENYVQELVEKIKLLEDLGKLEWHF 79 (229)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCeEEEEEECCCC-HHHHHHHHHcCC---ccccEEcHHHHHHHHHHhcccCCceEEE
Confidence 4556666665555544333321 3467788899999 555555888897 4678999999955222210001234566
Q ss_pred eCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHH
Q 005135 217 CNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQI 296 (712)
Q Consensus 217 ~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~ 296 (712)
-++.-+......+.. .+++.+|||++.++.|.+.+.+.+++.+|.|.|+ +|+..+|.|+.++++
T Consensus 80 ig~~q~~~~~~~~~~-----~~l~~~vds~~~~~~l~~~a~~~~~~~~V~l~vd-----------tg~gm~R~G~~~~e~ 143 (229)
T TIGR00044 80 IGPLQSNKDRLVVEN-----FDWVHTIDSLKIAKKLNEQREKLQPPLNVLLQIN-----------ISDEESKSGIQPEEL 143 (229)
T ss_pred ECCCcchHHHHHhhh-----cCEEEEECCHHHHHHHHHHHHhcCCCceEEEEEE-----------CCCCCCCCCCCHHHH
Confidence 666544444333332 4567899999999999999988888889999886 444468999999999
Q ss_pred HHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCC--CCcEEEEcC
Q 005135 297 LRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGA--NMQVIDIGG 357 (712)
Q Consensus 297 ~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~--~l~~IDIGG 357 (712)
.++++.+...++|+ +.||++|.+.. .+.+..++.++.+..+...+.+.+. ++..|.+|+
T Consensus 144 ~~~~~~i~~~~~l~-l~Gl~th~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lS~G~ 204 (229)
T TIGR00044 144 LELAIQIEELKHLK-LRGLMTIGAPT-DSHEDQEENFRFMKLLFWQIKQDSPFGTIDTLSMGM 204 (229)
T ss_pred HHHHHHHhcCCCCe-EEEEEEeCCCC-CCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEeeeC
Confidence 99999999999998 99999999974 5777777888888888888877653 456666554
No 49
>COG3616 Predicted amino acid aldolase or racemase [Amino acid transport and metabolism]
Probab=99.03 E-value=1.4e-08 Score=111.01 Aligned_cols=202 Identities=13% Similarity=0.146 Sum_probs=148.1
Q ss_pred CCCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHH
Q 005135 125 GLQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMS 204 (712)
Q Consensus 125 g~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~ 204 (712)
++.||+++.|.++++.|+.++++..... ..+++++ +|+.+.+.+.+.+.+.|+ +|+-|++..|.+....
T Consensus 15 ~l~tP~~liD~dr~~~Ni~r~qa~~~~~------g~~lrph--~KT~k~~~la~~ql~aGa---~git~~tl~eae~~a~ 83 (368)
T COG3616 15 DLDTPAALIDLDRLDGNIDRMQARADDH------GVRLRPH--VKTHKCPELARIQLDAGA---WGITCATLGEAEVFAD 83 (368)
T ss_pred CCCCchhhhhHHHHhhhHHHHHHhcccc------Cceeecc--cccccCHHHHHHHHhcCC---ceeEeechHHHHHHHc
Confidence 5999999999999999999999877642 2345555 999999999999999997 8999999999999999
Q ss_pred hcCCCCCCcEEEeCCCCCHHHHH-HHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccC
Q 005135 205 CLCKGSPEALLVCNGFKDAGYIT-LALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTS 283 (712)
Q Consensus 205 ~G~~~~p~~II~~ng~K~~e~I~-~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tg 283 (712)
+|+ ++|++.+|.-....++ ++....+.. .+.+++||.+.++.+.+.+.+.+++.+|.|-+.. |
T Consensus 84 aGi----~dIl~a~p~~~~~~~~~L~~l~~~~~-~~~~~iDs~~~~~~l~~~~~~~~~pl~v~iE~D~-----------G 147 (368)
T COG3616 84 AGI----DDILLAYPLPGRAALAALAELLADPP-RISVLIDSVEQLDALAALARDAGKPLRVLIEIDS-----------G 147 (368)
T ss_pred cCc----cceEEecCCCchhHHHHHHHhcCCCC-ceEEEeCCHHHHHHHHHHHHhcCCCeeEEEEeCC-----------C
Confidence 985 5789999866655555 433333222 2678899999999999999988888777777642 2
Q ss_pred CCCCCCCCCHHHH-HHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCC
Q 005135 284 GEKGKFGLTTTQI-LRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGG 358 (712)
Q Consensus 284 g~~SKFGl~~~e~-~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGG 358 (712)
..|.|+...++ ..+.+.+++.+.|+ +.|+.+|-|.--..........+ ......+...|....+|-.||-
T Consensus 148 --~~R~Gv~t~~~~~~La~~~~~~~~l~-~~Gv~~y~gh~~~~~~~~~~~~~--~~a~~~~~~~g~~~~~vt~ggt 218 (368)
T COG3616 148 --LHRSGVRTPEVAEALAAEIAAAPGLR-LAGVMTYPGHSYGPGSEVAAAER--VHAAALLGAVGRAAPVLTSGGT 218 (368)
T ss_pred --CCccCcCChHHHHHHHHhhhhccceE-EeeeecccccccCCcchhhhhhh--hhHHHHhcccCCccceeecCCC
Confidence 25678876544 44555566777887 99999999753222221111111 1222233456889999998774
No 50
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=99.00 E-value=2.2e-08 Score=121.31 Aligned_cols=214 Identities=12% Similarity=0.063 Sum_probs=160.9
Q ss_pred CCcCHHHHHHHhCCCCCCCCCCCCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCC----cHHHHHH
Q 005135 104 QEIDLLKIVKKVSDPKSVGGLGLQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQ----DRFVVED 179 (712)
Q Consensus 104 ~~i~l~el~~~~~~~~~~~~~g~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~----~~~Vl~~ 179 (712)
.++.|.+|++.+... .+.+.+..|.+.|++|++.+++..+. +.+++--||+|. ...|++.
T Consensus 442 r~~~le~i~~~~~~~-------~~~~~~~Idl~al~~N~~~i~~~~~~---------~~k~~aVvKa~aYGhG~~~va~~ 505 (822)
T PRK11930 442 RKFEFEQITELLEQK-------VHETVLEINLNAIVHNLNYYRSKLKP---------ETKIMCMVKAFAYGSGSYEIAKL 505 (822)
T ss_pred CCCCHHHHHHHHHHh-------hhhHHhhhhHHHHHHHHHHHHhhCCC---------CCEEEEEEeeccccCCHHHHHHH
Confidence 367899999998665 77788899999999999999986542 357788899998 5899999
Q ss_pred HHHcCCCCccceEecCHHHHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhc
Q 005135 180 IVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKL 259 (712)
Q Consensus 180 l~~~G~~~~~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~ 259 (712)
+.+.|+ -+|-|++..|.....++|+ +. .|++-++. .+++..+++ .++.++|+|.++++.+.+.+++.
T Consensus 506 l~~~G~---~~f~Va~l~Ea~~lr~~g~--~~-~Ilvl~~~--~~~~~~~~~-----~~l~~~i~s~~~l~~l~~~~~~~ 572 (822)
T PRK11930 506 LQEHRV---DYLAVAYADEGVSLRKAGI--TL-PIMVMNPE--PTSFDTIID-----YKLEPEIYSFRLLDAFIKAAQKK 572 (822)
T ss_pred HHHCCC---CEEEEeeHHHHHHHHhcCC--CC-CEEEEeCC--HHHHHHHHH-----cCCEEEECCHHHHHHHHHHHHHc
Confidence 999997 4789999999999999985 32 46556664 566777665 34578999999999999988777
Q ss_pred C-CCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCC-CCCh-HHHHHHHHHH
Q 005135 260 N-VRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQ-IPST-ALLTDGVGEA 336 (712)
Q Consensus 260 g-~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSq-i~d~-~~~~~ai~~~ 336 (712)
+ ++.+|-|.|+ || -+|.|+.++++.++++.+++.+.++ +.|+..|.++- ..+. ....+.++..
T Consensus 573 ~~~~~~v~l~vD-----------tG--m~R~G~~~~~~~~~~~~i~~~~~l~-~~Gi~tH~~~ad~~~~~~~~~~q~~~f 638 (822)
T PRK11930 573 GITGYPIHIKID-----------TG--MHRLGFEPEDIPELARRLKKQPALK-VRSVFSHLAGSDDPDHDDFTRQQIELF 638 (822)
T ss_pred CCCceEEEEEee-----------CC--CCCCCCChHHHHHHHHHHHhCCCCc-EEEEECCCCCCCCCCchHHHHHHHHHH
Confidence 6 6677777774 33 3788999999999999998888888 99999999864 2222 1224455555
Q ss_pred HHHHHHHHHcC-CCCcEEEEcCCCCc
Q 005135 337 AQIYCELVRLG-ANMQVIDIGGGLGI 361 (712)
Q Consensus 337 ~~~~~~L~~~G-~~l~~IDIGGGlgv 361 (712)
.++...+.+.| .+ .++.++..-++
T Consensus 639 ~~~~~~l~~~~~~~-~~~h~~nS~~~ 663 (822)
T PRK11930 639 DEGSEELQEALGYK-PIRHILNSAGI 663 (822)
T ss_pred HHHHHHHhhccCCC-CcEEccCCHHH
Confidence 56666665443 33 25565554443
No 51
>cd06825 PLPDE_III_VanT Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, VanT and similar proteins. This subfamily is composed of Enterococcus gallinarum VanT and similar proteins. VanT is a membrane-bound serine racemase (EC 5.1.1.18) that is essential for vancomycin resistance in Enterococcus gallinarum. It converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. The C-terminal region of this protein contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, which is homologous to the fold type III PLP-dependent enzyme, bacterial alanine racemase (AR). AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. On the basis of this similarity, it has been suggested that dimer formation of VanT is required for its catalytic activity, and that it catalyzes the racemization of serine in a mechanistically similar manner to that of alanine by
Probab=98.93 E-value=1.7e-07 Score=103.53 Aligned_cols=193 Identities=13% Similarity=0.057 Sum_probs=139.5
Q ss_pred EEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccC----CcHHHHHHHHHcCCCCccceEecCHHHHHHHHHh
Q 005135 130 LIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCN----QDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSC 205 (712)
Q Consensus 130 l~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN----~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~ 205 (712)
.+.+|++.|++|++.+++..+. +.++.--+|+| -...|.+.+.+.|+ -+|-|++..|.....++
T Consensus 3 ~~~Idl~al~~N~~~i~~~~~~---------~~~i~~VVKanAYGhG~~~va~~l~~~G~---~~faVa~~~EA~~Lr~~ 70 (368)
T cd06825 3 WLEIDLSALEHNVKEIKRLLPS---------TCKLMAVVKANAYGHGDVEVARVLEQIGI---DFFAVATIDEGIRLREA 70 (368)
T ss_pred EEEEEHHHHHHHHHHHHHhCCC---------CCeEEEEEeccccCCCHHHHHHHHHHcCC---CEEEEccHHHHHHHHhc
Confidence 4679999999999999987653 24566669996 56999999999997 48999999999999999
Q ss_pred cCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCC
Q 005135 206 LCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGE 285 (712)
Q Consensus 206 G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~ 285 (712)
|+ +. .|++-++. ..+++..+++ .++.++|+|++.++.+.+.+ ++.+|-|.|+ ||
T Consensus 71 Gi--~~-~Ilvl~~~-~~~~~~~~~~-----~~l~~~i~~~~~l~~l~~~~----~~~~vhlkvD-----------tG-- 124 (368)
T cd06825 71 GI--KG-EILILGYT-PPVRAKELKK-----YSLTQTLISEAYAEELSKYA----VNIKVHLKVD-----------TG-- 124 (368)
T ss_pred CC--CC-CEEEEcCC-CHHHHHHHHH-----cCCEEEECCHHHHHHHHhcC----CCceEEEEee-----------CC--
Confidence 85 33 34443433 3566777665 34579999999999987755 3456666664 33
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCC-CCh---HHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCc
Q 005135 286 KGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQI-PST---ALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGI 361 (712)
Q Consensus 286 ~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi-~d~---~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv 361 (712)
-+|+|+.++++ +.+..+.+.+.++ +.|++.|.++-- .+. ....+.++...++...+++.|.++.++.+|+-.++
T Consensus 125 m~R~G~~~~~~-~~~~~~~~~~~l~-~~Gi~tH~a~ad~~~~~~~~~~~~Q~~~f~~~~~~l~~~g~~~~~~h~~nSa~~ 202 (368)
T cd06825 125 MHRLGESPEDI-DSILAIYRLKNLK-VSGIFSHLCVSDSLDEDDIAFTKHQIACFDQVLADLKARGIEVGKIHIQSSYGI 202 (368)
T ss_pred CCCCCCCHHHH-HHHHHHHhCCCCc-EEEEECCCCCCCCCCCcCchHHHHHHHHHHHHHHHHHhcCCCCCcEEeeCCHHH
Confidence 37889988654 6666677778888 999999999742 121 12334455666666667667887778888877554
Q ss_pred C
Q 005135 362 D 362 (712)
Q Consensus 362 ~ 362 (712)
-
T Consensus 203 l 203 (368)
T cd06825 203 L 203 (368)
T ss_pred h
Confidence 3
No 52
>PRK03646 dadX alanine racemase; Reviewed
Probab=98.72 E-value=9.1e-07 Score=97.36 Aligned_cols=154 Identities=13% Similarity=0.061 Sum_probs=119.1
Q ss_pred EEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccC----CcHHHHHHHHHcCCCCccceEecCHHHHHHHHHh
Q 005135 130 LIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCN----QDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSC 205 (712)
Q Consensus 130 l~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN----~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~ 205 (712)
....|.+.|++|++.+++..+ +.++.--+|+| -...|.+.+.+ + -+|-|++..|....+++
T Consensus 5 ~~~Idl~al~~N~~~i~~~~~----------~~~i~aVVKanAYGhG~~~va~~l~~--~---~~faVa~l~Ea~~LR~~ 69 (355)
T PRK03646 5 QASLDLQALKQNLSIVREAAP----------GARVWSVVKANAYGHGIERIWSALGA--T---DGFAVLNLEEAITLRER 69 (355)
T ss_pred EEEEEHHHHHHHHHHHHHhCC----------CCeEEEEEeeccccCCHHHHHHHHhc--C---CEEEEeeHHHHHHHHhc
Confidence 366999999999999987653 24566668996 46888887754 3 37899999999999999
Q ss_pred cCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCC
Q 005135 206 LCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGE 285 (712)
Q Consensus 206 G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~ 285 (712)
|+ +. .|++-++.-+.+++..+.+ .++.++|+|.++++.+.+.+ .+++.+|-|.|+ ||
T Consensus 70 Gi--~~-~Ilvl~~~~~~~~~~~~~~-----~~l~~~i~s~~~l~~l~~~~--~~~~~~vhLkvD-----------TG-- 126 (355)
T PRK03646 70 GW--KG-PILMLEGFFHAQDLELYDQ-----HRLTTCVHSNWQLKALQNAR--LKAPLDIYLKVN-----------SG-- 126 (355)
T ss_pred CC--CC-CEEEEeCCCCHHHHHHHHH-----CCCEEEECCHHHHHHHHHhc--cCCCeEEEEEee-----------CC--
Confidence 85 43 4544445445667887775 34679999999999988765 355566776664 33
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCC
Q 005135 286 KGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQ 322 (712)
Q Consensus 286 ~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSq 322 (712)
-+|.|+.++|+.++++.+++.+.++ +.|++.|.++.
T Consensus 127 M~R~G~~~~e~~~~~~~i~~~~~l~-~~Gi~sH~a~a 162 (355)
T PRK03646 127 MNRLGFQPERVQTVWQQLRAMGNVG-EMTLMSHFARA 162 (355)
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCCE-EEEEEcCCCCC
Confidence 3788999999999999998888888 99999999874
No 53
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane]
Probab=98.55 E-value=1.3e-05 Score=87.85 Aligned_cols=190 Identities=18% Similarity=0.174 Sum_probs=137.3
Q ss_pred EEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCc----HHHHHHHHHcCCCCccceEecCHHHHHHHHHhc
Q 005135 131 IVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQD----RFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCL 206 (712)
Q Consensus 131 ~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~----~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~G 206 (712)
..+|.+.|++|++.+++..+. .++.-.||+|.- ..|.+.+.++|+ -+|-|++..|....+++|
T Consensus 7 ~~Idl~Al~~N~~~i~~~~~~----------~~~~AVVKAnAYGhG~~~va~~l~~~g~---~~f~VA~l~EAi~LR~~g 73 (360)
T COG0787 7 AEIDLGALRHNLRALRELAGP----------AKLMAVVKANAYGHGAVRVAKALLDAGA---DGFGVASLEEAIELREAG 73 (360)
T ss_pred EEEeHHHHHHHHHHHHHhCCC----------cEEEEEEeccccCCCHHHHHHHHHHcCC---CEEEECcHHHHHHHHHcC
Confidence 559999999999998876642 477778999984 889999999997 488999999999999999
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCC
Q 005135 207 CKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEK 286 (712)
Q Consensus 207 ~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~ 286 (712)
+ ....|++-++.-..+++..+.. .++..+|.|+++|+.+.+.+... .+.+|-|.++ || -
T Consensus 74 i--~~~~IlvL~g~~~~~~~~~~~~-----~~l~~~v~s~~ql~~l~~~~~~~-~~l~vhLkiD-----------TG--M 132 (360)
T COG0787 74 I--TGAPILVLEGFFPAEELELAAA-----YNLTPVVNSLEQLEALKNAALKN-KPLKVHLKID-----------TG--M 132 (360)
T ss_pred C--CCCCEEEEcCcCChhhHHHHHH-----cCCeEEECCHHHHHHHHHhhhhc-CceEEEEEEC-----------CC--C
Confidence 5 4235766676666666666665 44678999999999998876653 3445555442 44 4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCC-CChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCC
Q 005135 287 GKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQI-PSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLG 360 (712)
Q Consensus 287 SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi-~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlg 360 (712)
+|.|+.+++....+..+.....+. +.|+-.|..+-- ++.....+.+++ |- +...+.+.+.+.+.-.-+
T Consensus 133 ~RlG~~~~e~~~~~~~~~~~~~~~-~~gi~SHfa~ADe~~~~~~~~Q~~~---F~--~~~~~~~~~~~h~aNSa~ 201 (360)
T COG0787 133 NRLGLRPEEAVALAIDLIALKNLD-LEGIFSHFACADEPEDPYTLKQLER---FN--LAKQGLPGELSHLANSAG 201 (360)
T ss_pred CcCCCChHHHHHHHHHHhhccCCc-eEEEEcccCCCCCCCChHHHHHHHH---HH--HHhccCCCceEEEeccHH
Confidence 789999999888888877777777 999999998742 112222222222 22 445677777766654433
No 54
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism]
Probab=98.41 E-value=2.3e-05 Score=82.96 Aligned_cols=194 Identities=12% Similarity=0.129 Sum_probs=149.5
Q ss_pred CcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCC-cHHHHHHHHHcCCCCccceEecCHHHHHHHHHhc
Q 005135 128 LPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQ-DRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCL 206 (712)
Q Consensus 128 tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~-~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~G 206 (712)
.|-++.|.+.|++|.+.+++.++.. ++.+++-.|+-- ++.+.+.|.+.|. -|+-.+-..|+....++|
T Consensus 3 ~p~l~Idl~~ieeNak~~~~~a~~~--------gI~~~~vtK~~~g~~~iae~l~~~Gi---~~iaesr~~n~~~lr~~g 71 (353)
T COG3457 3 NPGLIIDLDKIEENAKVLQETAARY--------GIELYGVTKQFGGDPFIAEALLALGI---EGIAESRIDNAIRLREAG 71 (353)
T ss_pred CCcEEEeHHHHHHhHHHHHHHHHHc--------CCEEEEEEeeccCChHHHHHHHhcCc---ceeeehhHHHHHHHHHcC
Confidence 5788999999999999999998762 578888899865 7999999999996 366677788899999999
Q ss_pred CCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCC
Q 005135 207 CKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEK 286 (712)
Q Consensus 207 ~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~ 286 (712)
+.+ | -.++-.|+++ +|+..++ .++ ++.+-+++-+..|.+.|.++|+..+|.|+|..+.- ..
T Consensus 72 ~~~-~-~~Llr~P~~s--ei~~vv~----~~D-vs~~sel~~arqlse~A~~~Gk~h~VlLmVd~~Dl----------re 132 (353)
T COG3457 72 CTI-P-GHLLRSPCMS--EIEDVVR----KVD-VSTVSELDTARQLSEAAVRMGKVHDVLLMVDYGDL----------RE 132 (353)
T ss_pred CCc-C-ceEeecccHH--HHHHHHH----hcC-eEEEecHHHHHHHHHHHHHhCcceeEEEEEEcccc----------cC
Confidence 743 2 3455567554 4666554 245 57788899999999999999999999999975432 23
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCC---CCChHHHHHHHHHHHHHHHHHHHc-CCCCcEEEEc
Q 005135 287 GKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQ---IPSTALLTDGVGEAAQIYCELVRL-GANMQVIDIG 356 (712)
Q Consensus 287 SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSq---i~d~~~~~~ai~~~~~~~~~L~~~-G~~l~~IDIG 356 (712)
..+|+-.+++++.++++...+.++ +.||-+|.++. .++++ .+....+....|.+. |++++.|+-|
T Consensus 133 G~~~~~~~~l~~~V~eI~~lkGi~-~vGlgTnF~Cfg~v~PTp~----n~~~ll~~~~~lE~~~Gi~l~~vsag 201 (353)
T COG3457 133 GQWGFLIEDLEETVEEIQQLKGIH-LVGLGTNFPCFGDVLPTPE----NLESLLQGKKKLEASSGIQLKQVSAG 201 (353)
T ss_pred cchhhHHHHHHHHHHHHhcCCCce-EEeeecccccccCcCCCcc----cHHHHHHHHHHHHHhcCceeEEecCC
Confidence 333455689999999999999998 99998887653 44443 455666667777775 9999999843
No 55
>cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins. This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog)
Probab=98.36 E-value=0.00015 Score=75.14 Aligned_cols=174 Identities=18% Similarity=0.150 Sum_probs=118.0
Q ss_pred CcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHhcCCCCCCcE--EEeCCCCCHHHHHHHHHhccCCC
Q 005135 160 ARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEAL--LVCNGFKDAGYITLALLARKLDL 237 (712)
Q Consensus 160 ~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~G~~~~p~~I--I~~ng~K~~e~I~~Al~~~~~G~ 237 (712)
..++++-.-|.-+-.. ++.+.++|... +| =.-..|+..=.... +. .| -|-+.. ...-++.++... ..
T Consensus 22 ~~v~LvaVsK~~~~~~-i~~~~~~G~~~-fG--ENrvQe~~~K~~~l---~~-~i~wHfIG~L-Q~NK~k~i~~~~--~~ 90 (227)
T cd06822 22 SKPRLVAVSKTKPAEL-IKEAYDAGQRH-FG--ENYVQELIEKAPDL---PI-DIKWHFIGHL-QSNKVKKLLKVP--NL 90 (227)
T ss_pred CCcEEEEEECCCCHHH-HHHHHHcCCcc-cc--CcHHHHHHHHHHhc---cC-CceEEEECCC-chhhHHHHhccc--cc
Confidence 3578887778776554 55666778521 11 12233442211211 21 23 333442 233355543211 13
Q ss_pred cEEEEECCHHHHHHHHHHHHhc--CCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHH-HcCCCCceeE
Q 005135 238 NVVIVLEQEEEVDLVIEISKKL--NVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLE-VAEMLDCFQL 314 (712)
Q Consensus 238 ~v~IvVDs~~EL~~I~~~a~~~--g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~-~~~~L~~l~G 314 (712)
..+=+|||++-++.|.+.+.+. +.+..|.|-|| ++++.+|.|++++++.++++.+. +.++|+ ++|
T Consensus 91 ~~ihsvDs~~la~~L~~~a~~~~~~~~~~VlIqVn-----------~g~e~~K~Gv~~~e~~~l~~~i~~~~~~L~-l~G 158 (227)
T cd06822 91 YMVETVDSEKLADKLNKAWEKLGEREPLKVMVQVN-----------TSGEESKSGLEPSEAVELVKHIIEECPNLK-FSG 158 (227)
T ss_pred cEEEecCCHHHHHHHHHHHHHhcCCCCCcEEEEEe-----------CCCCCCCCCCCHHHHHHHHHHHHhhCCCce-EEE
Confidence 4567899999999999999887 88899999997 46778999999999999999996 899998 999
Q ss_pred EEEecCCCCCC-hHHHHHHHHHHHHHHHHHHHc-CCC--CcEEEEcC
Q 005135 315 LHFHIGSQIPS-TALLTDGVGEAAQIYCELVRL-GAN--MQVIDIGG 357 (712)
Q Consensus 315 LHfHiGSqi~d-~~~~~~ai~~~~~~~~~L~~~-G~~--l~~IDIGG 357 (712)
|++|-|-. .+ .+..++.++.+.++++.|++. |.+ +..|.+|+
T Consensus 159 LMt~~~~~-~~~~~~~r~~f~~l~~l~~~L~~~~g~~~~~~~lSmGm 204 (227)
T cd06822 159 LMTIGSFG-YSLSSGPNPDFLCLVDCRKKVCEKLGINPDDLELSMGM 204 (227)
T ss_pred EEeeCCCC-CCcHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEecc
Confidence 99998863 34 255577888888888888875 655 67888775
No 56
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]
Probab=98.29 E-value=0.00023 Score=72.98 Aligned_cols=194 Identities=13% Similarity=0.143 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHHHhHHhcCCC-CcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHhcCCCCCC-cE-
Q 005135 138 LRDRLESLHSAFEFAIQTQGYE-ARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPE-AL- 214 (712)
Q Consensus 138 L~~ni~~l~~af~~a~~~~~y~-~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~G~~~~p~-~I- 214 (712)
+.+|+.++++....+-+..+.. +.++++-.-|.-+ ...++.+.++|... +| =.=..|+..=.... +.. .|
T Consensus 3 i~~nl~~v~~~I~~a~~~a~R~~~~V~LvAVSK~~~-~~~I~~~~~aG~r~-fG--ENrvQe~~~K~~~l---~~~~~i~ 75 (228)
T COG0325 3 IKENLAAVRERIAAAAERAGRNPGSVTLVAVSKTVP-AEDIREAYEAGQRH-FG--ENRVQEALDKIEAL---KDLPDIE 75 (228)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcEEEEEEeCCCC-HHHHHHHHHcCChh-hc--chHHHHHHHHHHhc---CcCCCeE
Confidence 3455555555555444444433 3477776666655 55677888888521 11 01122222211221 111 13
Q ss_pred -EEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCH
Q 005135 215 -LVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTT 293 (712)
Q Consensus 215 -I~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~ 293 (712)
-|-++.-+. -.+.++.. +..+-+||++.-..+|.+.+...+.++++.|-|| ++++.||-|+++
T Consensus 76 WHfIG~LQsN-K~k~v~~~----~~~ihSlDr~klA~~l~kra~~~~~~l~v~iQVN-----------i~~E~sK~G~~~ 139 (228)
T COG0325 76 WHFIGPLQSN-KVKLVAEN----FDWIHSLDRLKLAKELNKRALELPKPLNVLIQVN-----------ISGEESKSGVPP 139 (228)
T ss_pred EEEechhhhh-HHHHHHhh----cceeeecCHHHHHHHHHHHHHhCCCCceEEEEEe-----------cCCccccCCCCH
Confidence 344553222 23444331 4456789999999999998888877899999997 467899999999
Q ss_pred HHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEc
Q 005135 294 TQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIG 356 (712)
Q Consensus 294 ~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIG 356 (712)
+++.++++.+++.++|+ +.||.+ +++-..|+......++.+.++++++.+...+++.|.+|
T Consensus 140 ~e~~~~~~~~~~~~~L~-l~GLM~-ipp~~~d~~~~~~~F~~l~~l~~~l~~~~~~~~~LSMG 200 (228)
T COG0325 140 EELDELAQEVQELPNLE-LRGLMT-IPPLTDDPEEIFAVFRKLRKLFDELKAKYPPIDELSMG 200 (228)
T ss_pred HHHHHHHHHHHhCCCCe-EeEEEe-eCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCeecCc
Confidence 99999999999999998 999998 77777799999999999999999998877788888876
No 57
>KOG3157 consensus Proline synthetase co-transcribed protein [General function prediction only]
Probab=96.04 E-value=0.023 Score=57.42 Aligned_cols=160 Identities=19% Similarity=0.188 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHhcCCCCCCcE-
Q 005135 136 DVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEAL- 214 (712)
Q Consensus 136 d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~G~~~~p~~I- 214 (712)
..|+..+++++++..++-+. ..+++++---|+-|- ..+..+...|.+. +| =-=..||.- ++- ..+ +.|
T Consensus 9 ~~L~~v~~rv~qa~~~~~r~---~~~~rlvaVSKtKPa-~~i~~~Y~~GqR~-FG--ENYVQEl~e--Kap-~lp-~DI~ 77 (244)
T KOG3157|consen 9 SALRAVIERVQQAVNQRPRD---ENAVRLVAVSKTKPA-SLIIEAYDAGQRH-FG--ENYVQELIE--KAP-LLP-DDIK 77 (244)
T ss_pred HHHHHHHHHHHHHHHhcccc---ccceEEEEeecCCcH-HHHHHHHHcCcCh-hh--HHHHHHHHH--hcc-cCc-ccce
Confidence 45677777777777643111 235676655677665 4566677777521 11 011233322 221 123 444
Q ss_pred -EEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCC--CceEEEEEeeCCCCCCCccccCCCCCCCCC
Q 005135 215 -LVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNV--RPVIGARAKLRTKHSGHFGSTSGEKGKFGL 291 (712)
Q Consensus 215 -I~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~--~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl 291 (712)
-|-+..-+.. +...+. --+.-.+-+||++.-..++.+...+++. +.+|.|.|| |+|+.+|+|+
T Consensus 78 WHFIG~lQsnK-~kkl~s--vpnL~~vetVDseK~A~~ld~a~~k~g~~~PL~V~VQvN-----------TSGEd~K~Gi 143 (244)
T KOG3157|consen 78 WHFIGHLQSNK-CKKLLS--VPNLYSVETVDSEKKARKLDSAWSKLGPDNPLKVLVQVN-----------TSGEDSKSGI 143 (244)
T ss_pred eeeechhhhcc-cchhcc--CCceEEEEecchHHHHHHHHHHHHhcCCCCCeEEEEEee-----------cCCccccCCC
Confidence 3333322211 222121 1233334468888888888887777776 567777775 7889999999
Q ss_pred CHHHHHHHHHHHHH-cCCCCceeEEEEecCCC
Q 005135 292 TTTQILRVVKKLEV-AEMLDCFQLLHFHIGSQ 322 (712)
Q Consensus 292 ~~~e~~~~l~~l~~-~~~L~~l~GLHfHiGSq 322 (712)
.+.++.++++.+++ ..+|+ +.||.. |||-
T Consensus 144 epse~~~l~~~i~~~c~nL~-f~GlMT-IGs~ 173 (244)
T KOG3157|consen 144 EPSEAPELAEHIKSECKNLK-FSGLMT-IGSF 173 (244)
T ss_pred ChhhhHHHHHHHHHhCCcce-eeeeEE-eccc
Confidence 99999999999977 78898 999986 7763
No 58
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=92.03 E-value=6.8 Score=40.83 Aligned_cols=165 Identities=19% Similarity=0.078 Sum_probs=92.8
Q ss_pred CCCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeecc------CCcHHHHHHHHHcCCCCccceEecC-HH
Q 005135 125 GLQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKC------NQDRFVVEDIVKFGSQFRFGLEAGS-KP 197 (712)
Q Consensus 125 g~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKa------N~~~~Vl~~l~~~G~~~~~GlEvaS-~~ 197 (712)
|.++|-..++.+...+-++.|.++ |. ..+.+-++... .....+++.+.+.+.+..+.+-+-. ..
T Consensus 8 G~q~~~~~~s~e~~~~i~~~L~~~--------GV-~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~ 78 (265)
T cd03174 8 GLQSEGATFSTEDKLEIAEALDEA--------GV-DSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREK 78 (265)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHc--------CC-CEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchh
Confidence 345555555666666556655443 11 11333333333 4456778888887632223233333 77
Q ss_pred HHHHHHHhcCCCCCCcEEEeCCCC----------C----HHHHHHHH-HhccCCCcEEEEE-------CCHHHHHHHHHH
Q 005135 198 ELLLAMSCLCKGSPEALLVCNGFK----------D----AGYITLAL-LARKLDLNVVIVL-------EQEEEVDLVIEI 255 (712)
Q Consensus 198 EL~~Al~~G~~~~p~~II~~ng~K----------~----~e~I~~Al-~~~~~G~~v~IvV-------Ds~~EL~~I~~~ 255 (712)
+++.+.++|. +.+.+.-+.. + .+.+..++ .+++.|..+.+++ .+.+++..+.+.
T Consensus 79 ~i~~a~~~g~----~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~ 154 (265)
T cd03174 79 GIERALEAGV----DEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKA 154 (265)
T ss_pred hHHHHHhCCc----CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHH
Confidence 7888888873 3443322222 1 22222222 2455788777777 667778888887
Q ss_pred HHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCC-CCceeEEEEecCCC
Q 005135 256 SKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEM-LDCFQLLHFHIGSQ 322 (712)
Q Consensus 256 a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~-L~~l~GLHfHiGSq 322 (712)
+.+.|.. .|++. .|.| -++++++.++++.+++.-. + ..++|+|---+
T Consensus 155 ~~~~g~~---~i~l~----------Dt~G-----~~~P~~v~~li~~l~~~~~~~--~~~~H~Hn~~g 202 (265)
T cd03174 155 LEEAGAD---EISLK----------DTVG-----LATPEEVAELVKALREALPDV--PLGLHTHNTLG 202 (265)
T ss_pred HHHcCCC---EEEec----------hhcC-----CcCHHHHHHHHHHHHHhCCCC--eEEEEeCCCCC
Confidence 7776642 23332 1211 2678899999999876532 3 46899997654
No 59
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=89.51 E-value=11 Score=41.67 Aligned_cols=132 Identities=16% Similarity=0.138 Sum_probs=73.2
Q ss_pred eeccCCcHHHHHHHHHcCCCCccce----EecCHHHHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHH-hccCCCcEEE
Q 005135 167 PVKCNQDRFVVEDIVKFGSQFRFGL----EAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALL-ARKLDLNVVI 241 (712)
Q Consensus 167 avKaN~~~~Vl~~l~~~G~~~~~Gl----EvaS~~EL~~Al~~G~~~~p~~II~~ng~K~~e~I~~Al~-~~~~G~~v~I 241 (712)
..++.+....++.+.+...+-.+.+ -.+...+++.|.+.|. +.|-++......+.+..+++ ++++|..+.+
T Consensus 58 g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~gv----d~iri~~~~~e~~~~~~~i~~ak~~G~~v~~ 133 (337)
T PRK08195 58 GFGAHTDEEYIEAAAEVVKQAKIAALLLPGIGTVDDLKMAYDAGV----RVVRVATHCTEADVSEQHIGLARELGMDTVG 133 (337)
T ss_pred CCCCCCHHHHHHHHHHhCCCCEEEEEeccCcccHHHHHHHHHcCC----CEEEEEEecchHHHHHHHHHHHHHCCCeEEE
Confidence 4455556677777755432111121 1136788888888884 33433333333333333333 4557776655
Q ss_pred EE-----CCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHc--CCCCceeE
Q 005135 242 VL-----EQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVA--EMLDCFQL 314 (712)
Q Consensus 242 vV-----Ds~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~--~~L~~l~G 314 (712)
++ -+.+++..+.+.+.+.|.. .|++. +|.| .+.+.++.+.++.+++. +.+ -.|
T Consensus 134 ~l~~a~~~~~e~l~~~a~~~~~~Ga~---~i~i~----------DT~G-----~~~P~~v~~~v~~l~~~l~~~i--~ig 193 (337)
T PRK08195 134 FLMMSHMAPPEKLAEQAKLMESYGAQ---CVYVV----------DSAG-----ALLPEDVRDRVRALRAALKPDT--QVG 193 (337)
T ss_pred EEEeccCCCHHHHHHHHHHHHhCCCC---EEEeC----------CCCC-----CCCHHHHHHHHHHHHHhcCCCC--eEE
Confidence 54 2456666665555555532 23332 2322 46889999999999865 234 469
Q ss_pred EEEecCCC
Q 005135 315 LHFHIGSQ 322 (712)
Q Consensus 315 LHfHiGSq 322 (712)
+|+|-.-+
T Consensus 194 ~H~HnnlG 201 (337)
T PRK08195 194 FHGHNNLG 201 (337)
T ss_pred EEeCCCcc
Confidence 99996554
No 60
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=89.24 E-value=24 Score=37.46 Aligned_cols=137 Identities=20% Similarity=0.153 Sum_probs=80.7
Q ss_pred ceeeeeeccCCcHHHHHHHHHcCCCCc-cceEecCHHHHHHHHHhcCCCCCCcEEEeCC----------CCCHHH-HHHH
Q 005135 162 YQGVFPVKCNQDRFVVEDIVKFGSQFR-FGLEAGSKPELLLAMSCLCKGSPEALLVCNG----------FKDAGY-ITLA 229 (712)
Q Consensus 162 ~~~~YavKaN~~~~Vl~~l~~~G~~~~-~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng----------~K~~e~-I~~A 229 (712)
+.+-+|-..-+....++.+.+.+..-. +.+-......++.|+.+|. +.|-++-+ .++.++ ++.+
T Consensus 39 IEvG~P~~~~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~g~----~~i~i~~~~S~~~~~~~~~~~~~e~~~~~ 114 (262)
T cd07948 39 IELTSPAASPQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVETGV----DGVDLVFGTSPFLREASHGKSITEIIESA 114 (262)
T ss_pred EEEECCCCCHHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHcCc----CEEEEEEecCHHHHHHHhCCCHHHHHHHH
Confidence 455555444445556666665543111 2344668888999999884 23433221 344444 3333
Q ss_pred ----HHhccCCCcEEEEEC-----CHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHH
Q 005135 230 ----LLARKLDLNVVIVLE-----QEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVV 300 (712)
Q Consensus 230 ----l~~~~~G~~v~IvVD-----s~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l 300 (712)
-.++..|..+.+.++ .++.+..+.+.+.+.|.. |+.+. +|.| -+++.++.+++
T Consensus 115 ~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~-----~i~l~--------Dt~G-----~~~P~~v~~~~ 176 (262)
T cd07948 115 VEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVN-----RVGIA--------DTVG-----IATPRQVYELV 176 (262)
T ss_pred HHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCC-----EEEEC--------CcCC-----CCCHHHHHHHH
Confidence 224456877777773 467777777766666543 33332 2322 35788999999
Q ss_pred HHHHHcCCCCceeEEEEecCCC
Q 005135 301 KKLEVAEMLDCFQLLHFHIGSQ 322 (712)
Q Consensus 301 ~~l~~~~~L~~l~GLHfHiGSq 322 (712)
+.+++.-.+. .++|+|---+
T Consensus 177 ~~~~~~~~~~--i~~H~Hn~~G 196 (262)
T cd07948 177 RTLRGVVSCD--IEFHGHNDTG 196 (262)
T ss_pred HHHHHhcCCe--EEEEECCCCC
Confidence 9998753343 5999997655
No 61
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=89.01 E-value=14 Score=39.54 Aligned_cols=104 Identities=16% Similarity=0.071 Sum_probs=58.5
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHH-hccCCCcEEEEEC----C---HHHHHHHHHHHHhcCCCceEE
Q 005135 195 SKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALL-ARKLDLNVVIVLE----Q---EEEVDLVIEISKKLNVRPVIG 266 (712)
Q Consensus 195 S~~EL~~Al~~G~~~~p~~II~~ng~K~~e~I~~Al~-~~~~G~~v~IvVD----s---~~EL~~I~~~a~~~g~~~~Ig 266 (712)
+...++.+.++|. +.|-++.+..+.+.+..+++ +++.|..+.+.+. + .+.+..+.+.+.+.|..
T Consensus 93 ~~~di~~~~~~g~----~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~---- 164 (275)
T cd07937 93 VELFVEKAAKNGI----DIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGAD---- 164 (275)
T ss_pred HHHHHHHHHHcCC----CEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCC----
Confidence 5667778888773 34544445445554444433 4456766544442 3 34444444444455432
Q ss_pred EEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCC
Q 005135 267 ARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQ 322 (712)
Q Consensus 267 LRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSq 322 (712)
||++. +|.| .+++.++.++++.+++.=.+ -.++|+|---+
T Consensus 165 -~i~l~--------DT~G-----~~~P~~v~~lv~~l~~~~~~--~l~~H~Hnd~G 204 (275)
T cd07937 165 -SICIK--------DMAG-----LLTPYAAYELVKALKKEVGL--PIHLHTHDTSG 204 (275)
T ss_pred -EEEEc--------CCCC-----CCCHHHHHHHHHHHHHhCCC--eEEEEecCCCC
Confidence 23332 2322 35788999999999875224 35899997654
No 62
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=88.12 E-value=11 Score=39.76 Aligned_cols=137 Identities=19% Similarity=0.203 Sum_probs=72.5
Q ss_pred ceeeeeeccCCcHHHHHHHHHcCCCCccceEe-cCHHHHHHHHHhcCCCCCCcEEEeCCCCC----------HHH-H---
Q 005135 162 YQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEA-GSKPELLLAMSCLCKGSPEALLVCNGFKD----------AGY-I--- 226 (712)
Q Consensus 162 ~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEv-aS~~EL~~Al~~G~~~~p~~II~~ng~K~----------~e~-I--- 226 (712)
+.+-||-.......+++.+.+.+.+..+-.=+ .....++.++.+|+ +.|-++.+..+ +++ +
T Consensus 37 iE~g~p~~~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~----~~i~i~~~~s~~~~~~~~~~~~~~~~~~~ 112 (259)
T cd07939 37 IEVGIPAMGEEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRCGV----TAVHISIPVSDIHLAHKLGKDRAWVLDQL 112 (259)
T ss_pred EEEecCCCCHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCc----CEEEEEEecCHHHHHHHhCCCHHHHHHHH
Confidence 45556655555557788887754321111112 45667888888873 34433333221 111 1
Q ss_pred -HHHHHhccCCCcEEEEECC-----HHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHH
Q 005135 227 -TLALLARKLDLNVVIVLEQ-----EEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVV 300 (712)
Q Consensus 227 -~~Al~~~~~G~~v~IvVDs-----~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l 300 (712)
+.+-.+++.|..+.++++. ++++..+.+.+.+.|.. .|++ . +|.| .+++.++.+++
T Consensus 113 ~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~---~i~l--~--------DT~G-----~~~P~~v~~lv 174 (259)
T cd07939 113 RRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGAD---RLRF--A--------DTVG-----ILDPFTTYELI 174 (259)
T ss_pred HHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCC---EEEe--C--------CCCC-----CCCHHHHHHHH
Confidence 1222244567666555543 34455454444444432 1333 2 2222 46788999999
Q ss_pred HHHHHcCCCCceeEEEEecCCC
Q 005135 301 KKLEVAEMLDCFQLLHFHIGSQ 322 (712)
Q Consensus 301 ~~l~~~~~L~~l~GLHfHiGSq 322 (712)
+.+++.--+. .++|+|---+
T Consensus 175 ~~l~~~~~~~--l~~H~Hn~~G 194 (259)
T cd07939 175 RRLRAATDLP--LEFHAHNDLG 194 (259)
T ss_pred HHHHHhcCCe--EEEEecCCCC
Confidence 9987652243 5999997654
No 63
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=86.95 E-value=28 Score=36.80 Aligned_cols=107 Identities=19% Similarity=0.161 Sum_probs=61.7
Q ss_pred ecCHHHHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHH-hccCCCcEEEEE-----CCHHHHHHHHHHHHhcCCCceEE
Q 005135 193 AGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALL-ARKLDLNVVIVL-----EQEEEVDLVIEISKKLNVRPVIG 266 (712)
Q Consensus 193 vaS~~EL~~Al~~G~~~~p~~II~~ng~K~~e~I~~Al~-~~~~G~~v~IvV-----Ds~~EL~~I~~~a~~~g~~~~Ig 266 (712)
.+....++.+++.|. +.+-++.+..+...++.+++ +++.|..+.+++ -+++++..+.+.+.+.|.. .
T Consensus 85 ~~~~~~i~~a~~~g~----~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d-~-- 157 (263)
T cd07943 85 IGTVDDLKMAADLGV----DVVRVATHCTEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGAD-C-- 157 (263)
T ss_pred ccCHHHHHHHHHcCC----CEEEEEechhhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCC-E--
Confidence 345677888888873 33433333222223333332 445677776666 3566666666666665542 1
Q ss_pred EEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCC
Q 005135 267 ARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQ 322 (712)
Q Consensus 267 LRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSq 322 (712)
|++ . +|.| -+++.++.++++.+++.-... -.++|+|---+
T Consensus 158 i~l--~--------DT~G-----~~~P~~v~~lv~~l~~~~~~~-~l~~H~Hn~~G 197 (263)
T cd07943 158 VYV--T--------DSAG-----AMLPDDVRERVRALREALDPT-PVGFHGHNNLG 197 (263)
T ss_pred EEE--c--------CCCC-----CcCHHHHHHHHHHHHHhCCCc-eEEEEecCCcc
Confidence 333 1 2322 367899999999998752222 35999997654
No 64
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=86.18 E-value=40 Score=37.18 Aligned_cols=131 Identities=14% Similarity=0.127 Sum_probs=71.1
Q ss_pred eccCCcHHHHHHHHHcCCCCccceE----ecCHHHHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHH-hccCCCcEEEE
Q 005135 168 VKCNQDRFVVEDIVKFGSQFRFGLE----AGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALL-ARKLDLNVVIV 242 (712)
Q Consensus 168 vKaN~~~~Vl~~l~~~G~~~~~GlE----vaS~~EL~~Al~~G~~~~p~~II~~ng~K~~e~I~~Al~-~~~~G~~v~Iv 242 (712)
.++.+...-++.+.+...+-.+..= -+...+++.|.++|. +.|-++......+.++..++ ++++|..+.++
T Consensus 58 ~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~gv----d~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~ 133 (333)
T TIGR03217 58 FSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAAYDAGA----RTVRVATHCTEADVSEQHIGMARELGMDTVGF 133 (333)
T ss_pred CCCCChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHHHHCCC----CEEEEEeccchHHHHHHHHHHHHHcCCeEEEE
Confidence 4555566666666654322112211 136788999999884 23423333333333333332 44567766555
Q ss_pred EC-----CHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHc-C-CCCceeEE
Q 005135 243 LE-----QEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVA-E-MLDCFQLL 315 (712)
Q Consensus 243 VD-----s~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~-~-~L~~l~GL 315 (712)
+. +.+++..+.+...+.|.. .|.+. +|.| .++++++.+.++.+++. + .+ -.|+
T Consensus 134 l~~s~~~~~e~l~~~a~~~~~~Ga~---~i~i~----------DT~G-----~~~P~~v~~~v~~l~~~l~~~i--~ig~ 193 (333)
T TIGR03217 134 LMMSHMTPPEKLAEQAKLMESYGAD---CVYIV----------DSAG-----AMLPDDVRDRVRALKAVLKPET--QVGF 193 (333)
T ss_pred EEcccCCCHHHHHHHHHHHHhcCCC---EEEEc----------cCCC-----CCCHHHHHHHHHHHHHhCCCCc--eEEE
Confidence 42 335555555555555432 23332 2322 36789999999999865 2 23 3699
Q ss_pred EEecCCC
Q 005135 316 HFHIGSQ 322 (712)
Q Consensus 316 HfHiGSq 322 (712)
|+|-.-+
T Consensus 194 H~HnnlG 200 (333)
T TIGR03217 194 HAHHNLS 200 (333)
T ss_pred EeCCCCc
Confidence 9997654
No 65
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=86.16 E-value=29 Score=38.81 Aligned_cols=135 Identities=19% Similarity=0.200 Sum_probs=76.9
Q ss_pred ceeeeeeccCCcHHHHHHHHHcCCCCccceEecC---HHHHHHHHHhcCCCCCCcEEEeCCCCCH--------------H
Q 005135 162 YQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGS---KPELLLAMSCLCKGSPEALLVCNGFKDA--------------G 224 (712)
Q Consensus 162 ~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS---~~EL~~Al~~G~~~~p~~II~~ng~K~~--------------e 224 (712)
+.+-||.-......+++.+.+.+... -+-+-+ ...++.|+.+|+ +.|-++.+..+. +
T Consensus 43 IE~G~p~~~~~~~e~i~~i~~~~~~~--~i~~~~r~~~~di~~a~~~g~----~~i~i~~~~Sd~h~~~~~~~s~~~~l~ 116 (378)
T PRK11858 43 IEAGFPAVSEDEKEAIKAIAKLGLNA--SILALNRAVKSDIDASIDCGV----DAVHIFIATSDIHIKHKLKKTREEVLE 116 (378)
T ss_pred EEEeCCCcChHHHHHHHHHHhcCCCe--EEEEEcccCHHHHHHHHhCCc----CEEEEEEcCCHHHHHHHhCCCHHHHHH
Confidence 45556665555557888888776422 122222 778888888874 344343343221 2
Q ss_pred HHHHHHH-hccCCCcEEEEEC-----CHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHH
Q 005135 225 YITLALL-ARKLDLNVVIVLE-----QEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILR 298 (712)
Q Consensus 225 ~I~~Al~-~~~~G~~v~IvVD-----s~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~ 298 (712)
.+..+++ ++..|..+.+..+ +.+.+..+.+.+.+.|.. ||++. +|.| .+++.++.+
T Consensus 117 ~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~-----~I~l~--------DT~G-----~~~P~~v~~ 178 (378)
T PRK11858 117 RMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGAD-----RVRFC--------DTVG-----ILDPFTMYE 178 (378)
T ss_pred HHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCC-----EEEEe--------ccCC-----CCCHHHHHH
Confidence 1222222 3446776666653 355666666666555543 33332 2332 468899999
Q ss_pred HHHHHHHcCCCCceeEEEEecCCC
Q 005135 299 VVKKLEVAEMLDCFQLLHFHIGSQ 322 (712)
Q Consensus 299 ~l~~l~~~~~L~~l~GLHfHiGSq 322 (712)
+++.+++.-.+ -.++|+|--.+
T Consensus 179 lv~~l~~~~~~--~l~~H~Hnd~G 200 (378)
T PRK11858 179 LVKELVEAVDI--PIEVHCHNDFG 200 (378)
T ss_pred HHHHHHHhcCC--eEEEEecCCcC
Confidence 99998765323 46999997655
No 66
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=85.27 E-value=43 Score=35.48 Aligned_cols=73 Identities=21% Similarity=0.163 Sum_probs=42.6
Q ss_pred hccCCCcEEEEEC-----CHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHc
Q 005135 232 ARKLDLNVVIVLE-----QEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVA 306 (712)
Q Consensus 232 ~~~~G~~v~IvVD-----s~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~ 306 (712)
+++.|..+.++.+ +++.+..+.+.+.+.|.. .|++. +|.| -+++.++.++++.+++.
T Consensus 123 a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~---~i~l~----------DT~G-----~~~P~~v~~lv~~l~~~ 184 (268)
T cd07940 123 AKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAGAT---TINIP----------DTVG-----YLTPEEFGELIKKLKEN 184 (268)
T ss_pred HHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCC---EEEEC----------CCCC-----CCCHHHHHHHHHHHHHh
Confidence 3446766666655 456656555555555532 23331 2322 25788999999999874
Q ss_pred -CCCCceeEEEEecCCC
Q 005135 307 -EMLDCFQLLHFHIGSQ 322 (712)
Q Consensus 307 -~~L~~l~GLHfHiGSq 322 (712)
+.++...++|+|-.-+
T Consensus 185 ~~~~~i~l~~H~Hn~~G 201 (268)
T cd07940 185 VPNIKVPISVHCHNDLG 201 (268)
T ss_pred CCCCceeEEEEecCCcc
Confidence 4211135999997654
No 67
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=81.01 E-value=69 Score=35.65 Aligned_cols=137 Identities=19% Similarity=0.205 Sum_probs=75.8
Q ss_pred ceeeeeeccCCcHHHHHHHHHcCCCCc-cceEecCHHHHHHHHHhcCCCCCCcEEEeCCC----------CCHH-HHH--
Q 005135 162 YQGVFPVKCNQDRFVVEDIVKFGSQFR-FGLEAGSKPELLLAMSCLCKGSPEALLVCNGF----------KDAG-YIT-- 227 (712)
Q Consensus 162 ~~~~YavKaN~~~~Vl~~l~~~G~~~~-~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng~----------K~~e-~I~-- 227 (712)
+.+-||.........++.+.+.+..-. ..+--.....++.|.++|. +.|-+..+. ++.+ .++
T Consensus 39 IEvG~p~~~~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~g~----~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~ 114 (363)
T TIGR02090 39 IEAGFPIASEGEFEAIKKISQEGLNAEICSLARALKKDIDKAIDCGV----DSIHTFIATSPIHLKYKLKKSRDEVLEKA 114 (363)
T ss_pred EEEeCCCCChHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHHcCc----CEEEEEEcCCHHHHHHHhCCCHHHHHHHH
Confidence 455566555555666777776653111 1112235777888888873 344332221 2321 122
Q ss_pred -HHH-HhccCCCcEEEEECC-----HHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHH
Q 005135 228 -LAL-LARKLDLNVVIVLEQ-----EEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVV 300 (712)
Q Consensus 228 -~Al-~~~~~G~~v~IvVDs-----~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l 300 (712)
.++ .+++.|..+.+.+++ ++.+..+.+.+.+.|.. ||++. +|.| .+++.++.+++
T Consensus 115 ~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~-----~i~l~--------DT~G-----~~~P~~v~~li 176 (363)
T TIGR02090 115 VEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAGAD-----RINIA--------DTVG-----VLTPQKMEELI 176 (363)
T ss_pred HHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCC-----EEEEe--------CCCC-----ccCHHHHHHHH
Confidence 122 144567777777643 45666665555555542 23332 2322 46789999999
Q ss_pred HHHHHcCCCCceeEEEEecCCC
Q 005135 301 KKLEVAEMLDCFQLLHFHIGSQ 322 (712)
Q Consensus 301 ~~l~~~~~L~~l~GLHfHiGSq 322 (712)
+.+++.-.+ ..++|+|--.+
T Consensus 177 ~~l~~~~~~--~l~~H~Hnd~G 196 (363)
T TIGR02090 177 KKLKENVKL--PISVHCHNDFG 196 (363)
T ss_pred HHHhcccCc--eEEEEecCCCC
Confidence 999865323 46999997655
No 68
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=79.99 E-value=11 Score=44.78 Aligned_cols=32 Identities=16% Similarity=0.139 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCC
Q 005135 290 GLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQI 323 (712)
Q Consensus 290 Gl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi 323 (712)
.+.+.++.++++.+++.-.+ -.++|+|--++.
T Consensus 180 ~l~P~~~~~lv~~lk~~~~~--pi~~H~Hnt~Gl 211 (593)
T PRK14040 180 LLKPYAAYELVSRIKKRVDV--PLHLHCHATTGL 211 (593)
T ss_pred CcCHHHHHHHHHHHHHhcCC--eEEEEECCCCch
Confidence 57889999999999875333 358999987763
No 69
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=79.92 E-value=27 Score=37.11 Aligned_cols=103 Identities=15% Similarity=0.099 Sum_probs=56.0
Q ss_pred HHHHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHH-hccCCCcEEEEECC-----HHHHHHHHHHHHhcCCCceEEEEE
Q 005135 196 KPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALL-ARKLDLNVVIVLEQ-----EEEVDLVIEISKKLNVRPVIGARA 269 (712)
Q Consensus 196 ~~EL~~Al~~G~~~~p~~II~~ng~K~~e~I~~Al~-~~~~G~~v~IvVDs-----~~EL~~I~~~a~~~g~~~~IgLRV 269 (712)
...+..+...|+ +.|-++-+.++.+.+..+++ ++++|..+.++++. .+++..+.+.+.+.|.. .|++
T Consensus 85 ~~~l~~a~~~gv----~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~---~i~l 157 (266)
T cd07944 85 IDLLEPASGSVV----DMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPD---VFYI 157 (266)
T ss_pred HHHHHHHhcCCc----CEEEEecccccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCC---EEEE
Confidence 345556655552 33433334444444444443 34467666555443 45555555554444422 2333
Q ss_pred eeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHc-CC-CCceeEEEEecCCC
Q 005135 270 KLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVA-EM-LDCFQLLHFHIGSQ 322 (712)
Q Consensus 270 n~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~-~~-L~~l~GLHfHiGSq 322 (712)
. +|.| .+++.++.++++.+++. +. + -.++|+|---+
T Consensus 158 ~----------DT~G-----~~~P~~v~~lv~~l~~~~~~~~--~i~~H~Hn~~G 195 (266)
T cd07944 158 V----------DSFG-----SMYPEDIKRIISLLRSNLDKDI--KLGFHAHNNLQ 195 (266)
T ss_pred e----------cCCC-----CCCHHHHHHHHHHHHHhcCCCc--eEEEEeCCCcc
Confidence 2 2322 46789999999999865 31 3 45999996554
No 70
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=79.55 E-value=64 Score=35.85 Aligned_cols=123 Identities=15% Similarity=0.093 Sum_probs=65.2
Q ss_pred HHHHHHHHHc-CCCCccceEecCHHHHHHHHHhcCCCCCCcEEEeC----------CCCCHHHHH----HHHH-hccCCC
Q 005135 174 RFVVEDIVKF-GSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCN----------GFKDAGYIT----LALL-ARKLDL 237 (712)
Q Consensus 174 ~~Vl~~l~~~-G~~~~~GlEvaS~~EL~~Al~~G~~~~p~~II~~n----------g~K~~e~I~----~Al~-~~~~G~ 237 (712)
..+++.+.+. +.. +..=+.....++.|+++|. +.|.+.- -.++.++.. .+++ +++.|.
T Consensus 103 ~ev~~~i~~~~~~~--~~~l~~n~~die~A~~~g~----~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl 176 (347)
T PLN02746 103 KDVMAAVRNLEGAR--FPVLTPNLKGFEAAIAAGA----KEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSI 176 (347)
T ss_pred HHHHHHHHhccCCc--eeEEcCCHHHHHHHHHcCc----CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC
Confidence 4677777663 222 2223668999999999984 3443331 124443332 1222 344565
Q ss_pred cEEEEE--------C---CHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHc
Q 005135 238 NVVIVL--------E---QEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVA 306 (712)
Q Consensus 238 ~v~IvV--------D---s~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~ 306 (712)
.+...+ + +++.+..+.+.+.+.|.. ||++. +|.| -+++.++.++++.+++.
T Consensus 177 ~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~Gad-----~I~l~--------DT~G-----~a~P~~v~~lv~~l~~~ 238 (347)
T PLN02746 177 PVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMGCY-----EISLG--------DTIG-----VGTPGTVVPMLEAVMAV 238 (347)
T ss_pred eEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcCCC-----EEEec--------CCcC-----CcCHHHHHHHHHHHHHh
Confidence 543223 1 244444444444444432 23332 2322 34688999999998764
Q ss_pred -CCCCceeEEEEecCCC
Q 005135 307 -EMLDCFQLLHFHIGSQ 322 (712)
Q Consensus 307 -~~L~~l~GLHfHiGSq 322 (712)
+.. -.++|+|--..
T Consensus 239 ~~~~--~i~~H~Hnd~G 253 (347)
T PLN02746 239 VPVD--KLAVHFHDTYG 253 (347)
T ss_pred CCCC--eEEEEECCCCC
Confidence 432 35899996554
No 71
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=78.80 E-value=85 Score=34.69 Aligned_cols=91 Identities=22% Similarity=0.284 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCceeEEEEec-------CCCCC-------ChHHHHHHHH-HHHHHHHHHHHcCCCCcEEEE
Q 005135 291 LTTTQILRVVKKLEVAEMLDCFQLLHFHI-------GSQIP-------STALLTDGVG-EAAQIYCELVRLGANMQVIDI 355 (712)
Q Consensus 291 l~~~e~~~~l~~l~~~~~L~~l~GLHfHi-------GSqi~-------d~~~~~~ai~-~~~~~~~~L~~~G~~l~~IDI 355 (712)
.+.+.+.++.+++++.|+ + ..|-||- |.|.. +.+.+.+++. ....++..|++.|+.++++-|
T Consensus 55 ~~~~~~~~~akrak~~Gm-~--vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQV 131 (332)
T PF07745_consen 55 NDLEDVIALAKRAKAAGM-K--VLLDFHYSDFWADPGKQNKPAAWANLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQV 131 (332)
T ss_dssp TSHHHHHHHHHHHHHTT--E--EEEEE-SSSS--BTTB-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEE
T ss_pred CCHHHHHHHHHHHHHCCC-e--EEEeecccCCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEe
Confidence 467889999999999998 4 3677876 55633 4455555544 456777888889999999999
Q ss_pred cC----CCCcCcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHH
Q 005135 356 GG----GLGIDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVC 394 (712)
Q Consensus 356 GG----Glgv~Y~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~ 394 (712)
|= |+=-+.. + .-+++.++.-+...++.+.
T Consensus 132 GNEin~Gmlwp~g--~--------~~~~~~~a~ll~ag~~AVr 164 (332)
T PF07745_consen 132 GNEINNGMLWPDG--K--------PSNWDNLAKLLNAGIKAVR 164 (332)
T ss_dssp SSSGGGESTBTTT--C--------TT-HHHHHHHHHHHHHHHH
T ss_pred CccccccccCcCC--C--------ccCHHHHHHHHHHHHHHHH
Confidence 96 3322221 1 2467888887776665443
No 72
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=78.15 E-value=1e+02 Score=33.07 Aligned_cols=71 Identities=23% Similarity=0.210 Sum_probs=44.1
Q ss_pred hccCCCcEEEEEC--------CHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHH
Q 005135 232 ARKLDLNVVIVLE--------QEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKL 303 (712)
Q Consensus 232 ~~~~G~~v~IvVD--------s~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l 303 (712)
++..|..+.+.++ +++.+..+.+.+.+.|.. ||++. +|.| -+++.++.++++.+
T Consensus 124 a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G~~-----~i~l~--------DT~G-----~~~P~~v~~l~~~l 185 (280)
T cd07945 124 AIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSDLPIK-----RIMLP--------DTLG-----ILSPFETYTYISDM 185 (280)
T ss_pred HHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHHcCCC-----EEEec--------CCCC-----CCCHHHHHHHHHHH
Confidence 3446777777777 456666665555555543 23322 2322 35788999999998
Q ss_pred HH-cCCCCceeEEEEecCCC
Q 005135 304 EV-AEMLDCFQLLHFHIGSQ 322 (712)
Q Consensus 304 ~~-~~~L~~l~GLHfHiGSq 322 (712)
++ .+.+. .++|+|--.+
T Consensus 186 ~~~~~~~~--i~~H~Hnd~G 203 (280)
T cd07945 186 VKRYPNLH--FDFHAHNDYD 203 (280)
T ss_pred HhhCCCCe--EEEEeCCCCC
Confidence 76 34443 5899997654
No 73
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=77.21 E-value=34 Score=40.61 Aligned_cols=32 Identities=25% Similarity=0.171 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCC
Q 005135 290 GLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQI 323 (712)
Q Consensus 290 Gl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi 323 (712)
.+++.++.++++.+++.-.+. .++|+|--+..
T Consensus 174 ~~~P~~v~~lv~~lk~~~~~p--i~~H~Hnt~Gl 205 (582)
T TIGR01108 174 ILTPKAAYELVSALKKRFGLP--VHLHSHATTGM 205 (582)
T ss_pred CcCHHHHHHHHHHHHHhCCCc--eEEEecCCCCc
Confidence 467899999999998753243 58999987764
No 74
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=76.46 E-value=88 Score=36.24 Aligned_cols=30 Identities=23% Similarity=0.197 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCceeEEEEecCCC
Q 005135 291 LTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQ 322 (712)
Q Consensus 291 l~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSq 322 (712)
+++.++.++++.+++.-.+. .++|+|-.+.
T Consensus 179 l~P~~v~~Lv~~lk~~~~vp--I~~H~Hnt~G 208 (467)
T PRK14041 179 LTPKRAYELVKALKKKFGVP--VEVHSHCTTG 208 (467)
T ss_pred cCHHHHHHHHHHHHHhcCCc--eEEEecCCCC
Confidence 57889999999998753343 5899997765
No 75
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=75.89 E-value=1e+02 Score=34.29 Aligned_cols=137 Identities=20% Similarity=0.220 Sum_probs=72.1
Q ss_pred ceeeeeeccCCcHHHHHHHHHcCCCCcc-ceEecCHHHHHHHHHhcCCCCCCcEEEeCCC----------CCHHH-HH--
Q 005135 162 YQGVFPVKCNQDRFVVEDIVKFGSQFRF-GLEAGSKPELLLAMSCLCKGSPEALLVCNGF----------KDAGY-IT-- 227 (712)
Q Consensus 162 ~~~~YavKaN~~~~Vl~~l~~~G~~~~~-GlEvaS~~EL~~Al~~G~~~~p~~II~~ng~----------K~~e~-I~-- 227 (712)
+.+-||.-+.....+++.+.+.+.+-.+ .+--.....++.|+.+|. +.|-++.+. |++++ ++
T Consensus 40 IEvG~p~~~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~----~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~ 115 (365)
T TIGR02660 40 LEVGIPAMGEEERAVIRAIVALGLPARLMAWCRARDADIEAAARCGV----DAVHISIPVSDLQIEAKLRKDRAWVLERL 115 (365)
T ss_pred EEEeCCCCCHHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCCc----CEEEEEEccCHHHHHHHhCcCHHHHHHHH
Confidence 4555666544445778888776521111 111145777888888873 334333332 22222 11
Q ss_pred -HHHH-hccCCCcEEEEECCH-----HHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHH
Q 005135 228 -LALL-ARKLDLNVVIVLEQE-----EEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVV 300 (712)
Q Consensus 228 -~Al~-~~~~G~~v~IvVDs~-----~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l 300 (712)
.+++ +++.|..+.+..++. +.+..+.+.+.+.|.. ||++. +|.| .+++.++.+++
T Consensus 116 ~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~-----~i~l~--------DT~G-----~~~P~~v~~lv 177 (365)
T TIGR02660 116 ARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAGAD-----RFRFA--------DTVG-----ILDPFSTYELV 177 (365)
T ss_pred HHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcC-----EEEEc--------ccCC-----CCCHHHHHHHH
Confidence 1111 344666665655543 3333344434444432 33332 2332 46789999999
Q ss_pred HHHHHcCCCCceeEEEEecCCC
Q 005135 301 KKLEVAEMLDCFQLLHFHIGSQ 322 (712)
Q Consensus 301 ~~l~~~~~L~~l~GLHfHiGSq 322 (712)
+.+++.-.+ ..++|+|--.+
T Consensus 178 ~~l~~~~~v--~l~~H~HNd~G 197 (365)
T TIGR02660 178 RALRQAVDL--PLEMHAHNDLG 197 (365)
T ss_pred HHHHHhcCC--eEEEEecCCCC
Confidence 998865223 35999997654
No 76
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=72.15 E-value=92 Score=33.48 Aligned_cols=135 Identities=16% Similarity=0.025 Sum_probs=70.5
Q ss_pred cCCcHHHHHHHHHcCCC--CccceEecCHHHHHHHHHhcCCCCCCcEEEeCC----------CCCHHHHH----HHHH-h
Q 005135 170 CNQDRFVVEDIVKFGSQ--FRFGLEAGSKPELLLAMSCLCKGSPEALLVCNG----------FKDAGYIT----LALL-A 232 (712)
Q Consensus 170 aN~~~~Vl~~l~~~G~~--~~~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng----------~K~~e~I~----~Al~-~ 232 (712)
++.....++.+.+.+.. .-...-......++.|+++|. +.+.+..+ .++.++.. .+++ +
T Consensus 49 ~~~d~~~v~~~~~~~~~~~~v~~~~r~~~~die~A~~~g~----~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a 124 (279)
T cd07947 49 TEKDREAVEACLDRGYKFPEVTGWIRANKEDLKLVKEMGL----KETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEA 124 (279)
T ss_pred ChHHHHHHHHHHHcCCCCCEEEEEecCCHHHHHHHHHcCc----CEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHH
Confidence 55566666667665421 112334467888999999984 23433222 23333322 1111 3
Q ss_pred ccCCCcEEEEECCHH----------HHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCC--CCCCCCCCHHHHHHHH
Q 005135 233 RKLDLNVVIVLEQEE----------EVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSG--EKGKFGLTTTQILRVV 300 (712)
Q Consensus 233 ~~~G~~v~IvVDs~~----------EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg--~~SKFGl~~~e~~~~l 300 (712)
+..|..+.+.+|... -+.++.+.+.+.|.. .||++. +|-| ...+|++.+.++.+++
T Consensus 125 ~~~g~~v~~~~ed~~r~d~~~~v~~~~~~~~~~~~~~G~~----~~i~l~--------DTvG~a~P~~~~~~p~~v~~l~ 192 (279)
T cd07947 125 LDHGIKPRCHLEDITRADIYGFVLPFVNKLMKLSKESGIP----VKIRLC--------DTLGYGVPYPGASLPRSVPKII 192 (279)
T ss_pred HHCCCeEEEEEEcccCCCcccchHHHHHHHHHHHHHCCCC----EEEEec--------cCCCcCCccccccchHHHHHHH
Confidence 345666666665322 233333333333321 234443 2222 2345677778999999
Q ss_pred HHHHHc---CCCCceeEEEEecCCC
Q 005135 301 KKLEVA---EMLDCFQLLHFHIGSQ 322 (712)
Q Consensus 301 ~~l~~~---~~L~~l~GLHfHiGSq 322 (712)
+.+++. +.. -.++|+|--..
T Consensus 193 ~~l~~~~~~p~~--~l~~H~Hn~~G 215 (279)
T cd07947 193 YGLRKDCGVPSE--NLEWHGHNDFY 215 (279)
T ss_pred HHHHHhcCCCCc--eEEEEecCCCC
Confidence 998764 222 25999996554
No 77
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=72.05 E-value=82 Score=33.92 Aligned_cols=104 Identities=14% Similarity=0.153 Sum_probs=53.4
Q ss_pred EECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHH-----HHHHHHHHHHHcCCCCceeEEE
Q 005135 242 VLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTT-----QILRVVKKLEVAEMLDCFQLLH 316 (712)
Q Consensus 242 vVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~-----e~~~~l~~l~~~~~L~~l~GLH 316 (712)
...|+..|.++++...+.+++ ..||..+.-+ |. +.+ +.|.+.. ++.++=+.+++.++ -|.
T Consensus 40 ~~~Nl~~l~~~L~~n~~~~I~---~yRisS~liP---~a--shp--~~~~~~~~~~~~~l~~iG~~~~~~~i-----Rls 104 (275)
T PF03851_consen 40 ARQNLEDLLRILEYNIAHGIR---FYRISSDLIP---LA--SHP--EVGWDWEEEFAEELAEIGDLAKENGI-----RLS 104 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTT-----EEE--TTSST---TT--TST--T--S-HHHHHHHHHHHHHHHHHHTT------EEE
T ss_pred HHHHHHHHHHHHHHHHHcCCC---EEecCcccCC---CC--CCc--ccccchHHHHHHHHHHHHHHHHHcCC-----eEE
Confidence 346788888888888876643 4688644221 10 011 3445443 23333334455553 488
Q ss_pred EecCCC----CCChHHHHHHHHHHHHHHHHHHHcCCCCc-----EEEEcCCCC
Q 005135 317 FHIGSQ----IPSTALLTDGVGEAAQIYCELVRLGANMQ-----VIDIGGGLG 360 (712)
Q Consensus 317 fHiGSq----i~d~~~~~~ai~~~~~~~~~L~~~G~~l~-----~IDIGGGlg 360 (712)
||.|-. .++.+.+.++++++.--+.-|..+|.+-. .|-+||.+|
T Consensus 105 ~HP~qf~vLnSp~~~Vv~~si~~L~yH~~~Ld~mg~~~~~~~~i~IH~GG~Yg 157 (275)
T PF03851_consen 105 MHPDQFTVLNSPREEVVENSIRDLEYHARLLDLMGLDDSPDHKINIHVGGVYG 157 (275)
T ss_dssp E---TT--TT-SSHHHHHHHHHHHHHHHHHHHHTT-TT----EEEEE----SS
T ss_pred ecCCcceeCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccEEEEeeCCCCC
Confidence 998752 34678888888888777777777887655 788888776
No 78
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=71.19 E-value=1.5e+02 Score=31.58 Aligned_cols=136 Identities=15% Similarity=0.114 Sum_probs=77.2
Q ss_pred eccCCcHHHHHHHHHcCCCCccceEecC----HHHHHHHH---HhcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEE
Q 005135 168 VKCNQDRFVVEDIVKFGSQFRFGLEAGS----KPELLLAM---SCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVV 240 (712)
Q Consensus 168 vKaN~~~~Vl~~l~~~G~~~~~GlEvaS----~~EL~~Al---~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~ 240 (712)
+...+...+++.|.+.|.. -+||+| ..+...+. +.+ .+..+ +.-..-..+.++.|+++ |+..+
T Consensus 19 ~s~~~k~~i~~~L~~~Gv~---~IEvG~P~~~~~~~~~~~~l~~~~---~~~~v-~~~~r~~~~di~~a~~~---g~~~i 88 (262)
T cd07948 19 FDTEDKIEIAKALDAFGVD---YIELTSPAASPQSRADCEAIAKLG---LKAKI-LTHIRCHMDDARIAVET---GVDGV 88 (262)
T ss_pred CCHHHHHHHHHHHHHcCCC---EEEEECCCCCHHHHHHHHHHHhCC---CCCcE-EEEecCCHHHHHHHHHc---CcCEE
Confidence 4555567899999999973 467754 33332222 222 22333 32223345679999874 45432
Q ss_pred -EEE----------------CCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHH
Q 005135 241 -IVL----------------EQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKL 303 (712)
Q Consensus 241 -IvV----------------Ds~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l 303 (712)
+.+ ++++++..+.+.+++.|.. +++.+. .-|+.+++.+.++++++
T Consensus 89 ~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~----v~~~~e--------------da~r~~~~~l~~~~~~~ 150 (262)
T cd07948 89 DLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIE----VRFSSE--------------DSFRSDLVDLLRVYRAV 150 (262)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe----EEEEEE--------------eeCCCCHHHHHHHHHHH
Confidence 222 4455566666777776533 444432 23577889999999999
Q ss_pred HHcCCCCceeEEEEecCCCCCChHHHHHHHHH
Q 005135 304 EVAEMLDCFQLLHFHIGSQIPSTALLTDGVGE 335 (712)
Q Consensus 304 ~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~ 335 (712)
.+.|. + -..|-=..| +.++..+.+-++.
T Consensus 151 ~~~g~-~-~i~l~Dt~G--~~~P~~v~~~~~~ 178 (262)
T cd07948 151 DKLGV-N-RVGIADTVG--IATPRQVYELVRT 178 (262)
T ss_pred HHcCC-C-EEEECCcCC--CCCHHHHHHHHHH
Confidence 98875 3 223332344 5677654443333
No 79
>PRK09389 (R)-citramalate synthase; Provisional
Probab=69.94 E-value=1.7e+02 Score=34.03 Aligned_cols=137 Identities=15% Similarity=0.116 Sum_probs=72.5
Q ss_pred ceeeeeeccCCcHHHHHHHHHcCCCCc-cceEecCHHHHHHHHHhcCCCCCCcEEEeCCCCCH----------H-HHHHH
Q 005135 162 YQGVFPVKCNQDRFVVEDIVKFGSQFR-FGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDA----------G-YITLA 229 (712)
Q Consensus 162 ~~~~YavKaN~~~~Vl~~l~~~G~~~~-~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng~K~~----------e-~I~~A 229 (712)
+.+-||.-.......++.+.+.+..-. +++--.....++.++++|. +.|-+..+..+. + .++.+
T Consensus 41 IE~G~p~~~~~d~e~v~~i~~~~~~~~i~a~~r~~~~di~~a~~~g~----~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~ 116 (488)
T PRK09389 41 IEAGSAITSEGEREAIKAVTDEGLNAEICSFARAVKVDIDAALECDV----DSVHLVVPTSDLHIEYKLKKTREEVLETA 116 (488)
T ss_pred EEEeCCcCCHHHHHHHHHHHhcCCCcEEEeecccCHHHHHHHHhCCc----CEEEEEEccCHHHHHHHhCCCHHHHHHHH
Confidence 455566544445667777776552111 1122234677888888873 245344332211 1 11221
Q ss_pred H---H-hccCCCcEEEEEC-----CHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHH
Q 005135 230 L---L-ARKLDLNVVIVLE-----QEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVV 300 (712)
Q Consensus 230 l---~-~~~~G~~v~IvVD-----s~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l 300 (712)
. + +++.|..+.+..+ +++-+..+.+.+.+.|.. ||++. +|.| .+++.++.+++
T Consensus 117 ~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~-----~i~l~--------DTvG-----~~~P~~~~~lv 178 (488)
T PRK09389 117 VEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAGAD-----RICFC--------DTVG-----ILTPEKTYELF 178 (488)
T ss_pred HHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCC-----EEEEe--------cCCC-----CcCHHHHHHHH
Confidence 1 1 3345666666665 344444444444444432 23332 2322 46788999999
Q ss_pred HHHHHcCCCCceeEEEEecCCC
Q 005135 301 KKLEVAEMLDCFQLLHFHIGSQ 322 (712)
Q Consensus 301 ~~l~~~~~L~~l~GLHfHiGSq 322 (712)
+.+++.-.+ ..++|+|--.+
T Consensus 179 ~~l~~~~~v--~l~~H~HND~G 198 (488)
T PRK09389 179 KRLSELVKG--PVSIHCHNDFG 198 (488)
T ss_pred HHHHhhcCC--eEEEEecCCcc
Confidence 998875333 46999997655
No 80
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=68.98 E-value=51 Score=39.30 Aligned_cols=94 Identities=20% Similarity=0.138 Sum_probs=53.0
Q ss_pred HHHHHHHhccCCCcEEEEECCHHHHHHHH---HHHHhcCCCceEEEEEeeCCCCCCC-cc-------ccCC----CCCCC
Q 005135 225 YITLALLARKLDLNVVIVLEQEEEVDLVI---EISKKLNVRPVIGARAKLRTKHSGH-FG-------STSG----EKGKF 289 (712)
Q Consensus 225 ~I~~Al~~~~~G~~v~IvVDs~~EL~~I~---~~a~~~g~~~~IgLRVn~~~~~~~~-~~-------~tgg----~~SKF 289 (712)
+++.|.+ .|+.++=++|++.+++.+. +.+++.|......|=...+..++-. +. ..|- ..--.
T Consensus 101 ~v~~a~~---~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~IkDta 177 (596)
T PRK14042 101 FVKLAVN---NGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCDSIAIKDMA 177 (596)
T ss_pred HHHHHHH---cCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCcc
Confidence 5555554 7888777888888777664 4455666654444333222111110 00 1111 11123
Q ss_pred C-CCHHHHHHHHHHHHHcCCCCceeEEEEecCCCC
Q 005135 290 G-LTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQI 323 (712)
Q Consensus 290 G-l~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi 323 (712)
| +++.++.++++.+++.-.+ -.++|+|--++.
T Consensus 178 G~l~P~~v~~lv~alk~~~~i--pi~~H~Hnt~Gl 210 (596)
T PRK14042 178 GLLTPTVTVELYAGLKQATGL--PVHLHSHSTSGL 210 (596)
T ss_pred cCCCHHHHHHHHHHHHhhcCC--EEEEEeCCCCCc
Confidence 4 4678899999999875334 458999977763
No 81
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=68.37 E-value=1.5e+02 Score=32.06 Aligned_cols=124 Identities=19% Similarity=0.053 Sum_probs=65.1
Q ss_pred HHHHHHHHHcCCCCccceEecCHHHHHHHHHhcCCCCCCcEEEeCC----------CCCHHH----HHHHHH-hccCCCc
Q 005135 174 RFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNG----------FKDAGY----ITLALL-ARKLDLN 238 (712)
Q Consensus 174 ~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng----------~K~~e~----I~~Al~-~~~~G~~ 238 (712)
..+++.|.+.. +..+..=+.....++.|+++|. +.+-+.-+ .++.++ ++.+++ +++.|..
T Consensus 61 ~e~~~~l~~~~-~~~~~~l~~~~~~ie~A~~~g~----~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~ 135 (287)
T PRK05692 61 AEVMAGIQRRP-GVTYAALTPNLKGLEAALAAGA----DEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVR 135 (287)
T ss_pred HHHHHhhhccC-CCeEEEEecCHHHHHHHHHcCC----CEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCE
Confidence 45566665422 1112223457778888888873 23322211 233333 333333 3445654
Q ss_pred EEEE----E----C---CHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHc-
Q 005135 239 VVIV----L----E---QEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVA- 306 (712)
Q Consensus 239 v~Iv----V----D---s~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~- 306 (712)
+... + + +++.+..+.+.+.+.|.. ||++. +|.| -+++.++.++++.+++.
T Consensus 136 v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d-----~i~l~--------DT~G-----~~~P~~v~~lv~~l~~~~ 197 (287)
T PRK05692 136 VRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCY-----EISLG--------DTIG-----VGTPGQVRAVLEAVLAEF 197 (287)
T ss_pred EEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCc-----EEEec--------cccC-----ccCHHHHHHHHHHHHHhC
Confidence 3221 2 1 455666666655566543 33332 2322 34788999999998864
Q ss_pred CCCCceeEEEEecCCC
Q 005135 307 EMLDCFQLLHFHIGSQ 322 (712)
Q Consensus 307 ~~L~~l~GLHfHiGSq 322 (712)
+.+. .++|+|--..
T Consensus 198 ~~~~--i~~H~Hn~~G 211 (287)
T PRK05692 198 PAER--LAGHFHDTYG 211 (287)
T ss_pred CCCe--EEEEecCCCC
Confidence 4343 4899997655
No 82
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=67.93 E-value=47 Score=32.48 Aligned_cols=103 Identities=16% Similarity=0.103 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHcCCCCceeEEEEecCCCCC-------ChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCC
Q 005135 293 TTQILRVVKKLEVAEMLDCFQLLHFHIGSQIP-------STALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDG 365 (712)
Q Consensus 293 ~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~-------d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~ 365 (712)
..++.++.+.+++.++ . +..+|++...... +.+ .+++++.+.+.++.++++| .+++.+..|- .+...
T Consensus 26 ~~~~~~~~~~~~~~gl-~-i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg--~~~i~~~~g~-~~~~~ 99 (213)
T PF01261_consen 26 DDEAEELRRLLEDYGL-K-IASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLG--AKYIVVHSGR-YPSGP 99 (213)
T ss_dssp HHHHHHHHHHHHHTTC-E-EEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHT--BSEEEEECTT-ESSST
T ss_pred hHHHHHHHHHHHHcCC-e-EEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhC--CCceeecCcc-ccccc
Confidence 3567778888888886 5 8889988765432 223 5566666666666666677 4556666552 11110
Q ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHHH---HHHhcCCCCCeEEecCcchhcc
Q 005135 366 SKSADSDLSVAYTLEEYASAVVQAIRY---VCDRKNVKHPVLCSESGRAIVS 414 (712)
Q Consensus 366 s~~~~~~~s~~ysleeya~~Iv~~l~~---~~~~~gv~~p~Li~EPGRalvA 414 (712)
..+.++-.+.+++.+++ ++++.|+ +|.+||-.....
T Consensus 100 ----------~~~~~~~~~~~~~~l~~l~~~a~~~gv---~i~lE~~~~~~~ 138 (213)
T PF01261_consen 100 ----------EDDTEENWERLAENLRELAEIAEEYGV---RIALENHPGPFS 138 (213)
T ss_dssp ----------TSSHHHHHHHHHHHHHHHHHHHHHHTS---EEEEE-SSSSSS
T ss_pred ----------CCCHHHHHHHHHHHHHHHHhhhhhhcc---eEEEecccCccc
Confidence 12343444444444444 4556676 899998766654
No 83
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=66.91 E-value=26 Score=38.76 Aligned_cols=46 Identities=22% Similarity=0.270 Sum_probs=33.4
Q ss_pred CCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCC
Q 005135 261 VRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQ 322 (712)
Q Consensus 261 ~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSq 322 (712)
....|++|+++... -+=|++.++..++++.+.+.|. + .||+|.|+.
T Consensus 214 ~~~~v~~R~s~~~~------------~~~g~~~ee~~~i~~~L~~~Gv-D---~I~Vs~g~~ 259 (353)
T cd04735 214 KDFILGYRFSPEEP------------EEPGIRMEDTLALVDKLADKGL-D---YLHISLWDF 259 (353)
T ss_pred CCceEEEEECcccc------------cCCCCCHHHHHHHHHHHHHcCC-C---EEEeccCcc
Confidence 56689999986321 0117888999999999988873 5 578877754
No 84
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=66.79 E-value=1.4e+02 Score=34.35 Aligned_cols=30 Identities=27% Similarity=0.228 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCceeEEEEecCCC
Q 005135 291 LTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQ 322 (712)
Q Consensus 291 l~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSq 322 (712)
+++.++.++++.+++.-.+ -.++|+|-...
T Consensus 180 l~P~~v~~lv~alk~~~~~--pi~~H~Hnt~G 209 (448)
T PRK12331 180 LTPYVAYELVKRIKEAVTV--PLEVHTHATSG 209 (448)
T ss_pred CCHHHHHHHHHHHHHhcCC--eEEEEecCCCC
Confidence 4678899999999875324 35899997765
No 85
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=66.54 E-value=1.8e+02 Score=30.87 Aligned_cols=142 Identities=10% Similarity=-0.016 Sum_probs=81.6
Q ss_pred eccCCcHHHHHHHHHcCCCCccceEec----C------------HHHHHHHHHhcCCCCCCcE-EEeCCC-CCHHHHHHH
Q 005135 168 VKCNQDRFVVEDIVKFGSQFRFGLEAG----S------------KPELLLAMSCLCKGSPEAL-LVCNGF-KDAGYITLA 229 (712)
Q Consensus 168 vKaN~~~~Vl~~l~~~G~~~~~GlEva----S------------~~EL~~Al~~G~~~~p~~I-I~~ng~-K~~e~I~~A 229 (712)
+..-....+++.|.+.|.. -+|++ | ...++.+.+... +..++ .++.+. .+.+.|+.|
T Consensus 17 f~~~~~~~ia~~L~~~GVd---~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~l~~a 91 (266)
T cd07944 17 FGDEFVKAIYRALAAAGID---YVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK--GNTKIAVMVDYGNDDIDLLEPA 91 (266)
T ss_pred CCHHHHHHHHHHHHHCCCC---EEEeecCCCCccccCCCccCCCHHHHHHHHhhhc--cCCEEEEEECCCCCCHHHHHHH
Confidence 3444445788888888863 35555 1 233444444431 13344 455553 467788888
Q ss_pred HHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCC
Q 005135 230 LLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEML 309 (712)
Q Consensus 230 l~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L 309 (712)
.....-.+++.+-...++++....+.+++.|.. +++++.. -|+.+.+.+.++++++.+.|.
T Consensus 92 ~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~----v~~~~~~--------------a~~~~~~~~~~~~~~~~~~g~- 152 (266)
T cd07944 92 SGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYE----VFFNLMA--------------ISGYSDEELLELLELVNEIKP- 152 (266)
T ss_pred hcCCcCEEEEecccccHHHHHHHHHHHHHCCCe----EEEEEEe--------------ecCCCHHHHHHHHHHHHhCCC-
Confidence 763211133344456777777777778777643 4454421 135788999999999988874
Q ss_pred CceeEEEEecCCCCCChHHHHHHHHHH
Q 005135 310 DCFQLLHFHIGSQIPSTALLTDGVGEA 336 (712)
Q Consensus 310 ~~l~GLHfHiGSqi~d~~~~~~ai~~~ 336 (712)
+ .+.+=--..+..++.+.+-++.+
T Consensus 153 ~---~i~l~DT~G~~~P~~v~~lv~~l 176 (266)
T cd07944 153 D---VFYIVDSFGSMYPEDIKRIISLL 176 (266)
T ss_pred C---EEEEecCCCCCCHHHHHHHHHHH
Confidence 4 34443333466787555444443
No 86
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=65.18 E-value=1.9e+02 Score=31.46 Aligned_cols=107 Identities=13% Similarity=0.136 Sum_probs=65.8
Q ss_pred EEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCC--CCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEe
Q 005135 241 IVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTK--HSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFH 318 (712)
Q Consensus 241 IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~--~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfH 318 (712)
+...|+..|.++++...+.+++ ..|+.-..- .+|. ...+ ....-...+++.++-+.+++.++ + +.+|
T Consensus 42 ~~~~Nl~~l~~~l~~~~~~~I~---~~R~sS~l~P~~~h~--~~~~-w~~~~~~~~~~~~~g~~~~~~~i-r----ls~H 110 (303)
T PRK02308 42 IALSNLENLLRILKYNIAHGIG---LFRLSSSLIPLATHP--ELEG-WDYIEPFKEELREIGEFIKEHNI-R----LSFH 110 (303)
T ss_pred HHHHHHHHHHHHHHHHHHCCCC---EEEcccCcCCCCCCh--hhcc-cCCCCCCHHHHHHHHHHHHHcCC-C----eecc
Confidence 4567888899999988877654 357654321 1121 0000 11123455677777777777754 4 6677
Q ss_pred cCCC----CCChHHHHHHHHHHHHHHHHHHHcCCC---CcEEEEcCC
Q 005135 319 IGSQ----IPSTALLTDGVGEAAQIYCELVRLGAN---MQVIDIGGG 358 (712)
Q Consensus 319 iGSq----i~d~~~~~~ai~~~~~~~~~L~~~G~~---l~~IDIGGG 358 (712)
.+.- .++.+.+..+++.+..-+..+..+|.+ .=+|-.||.
T Consensus 111 p~y~inL~S~~~ev~e~Si~~L~~~~~~~~~lG~~~~~~vViHpG~~ 157 (303)
T PRK02308 111 PDQFVVLNSPKPEVVENSIKDLEYHAKLLDLMGIDDSSKINIHVGGA 157 (303)
T ss_pred ChhhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCcc
Confidence 5531 235677788888888888877888876 555666664
No 87
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=64.90 E-value=53 Score=36.23 Aligned_cols=50 Identities=18% Similarity=0.323 Sum_probs=36.5
Q ss_pred hcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCC
Q 005135 258 KLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQ 322 (712)
Q Consensus 258 ~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSq 322 (712)
..+....|++|+++... -+-|++.++..++++.|.+.|.++ .||+|.|+.
T Consensus 204 ~vg~~~~v~iRl~~~~~------------~~~G~~~~e~~~~~~~l~~~G~vd---~i~vs~g~~ 253 (343)
T cd04734 204 AVGPDFIVGIRISGDED------------TEGGLSPDEALEIAARLAAEGLID---YVNVSAGSY 253 (343)
T ss_pred HcCCCCeEEEEeehhhc------------cCCCCCHHHHHHHHHHHHhcCCCC---EEEeCCCCC
Confidence 45666789999975421 122789999999999999887545 588887764
No 88
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=64.88 E-value=1.8e+02 Score=30.32 Aligned_cols=101 Identities=18% Similarity=0.209 Sum_probs=57.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCceeEEEE--e----cCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcC
Q 005135 289 FGLTTTQILRVVKKLEVAEMLDCFQLLHF--H----IGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGID 362 (712)
Q Consensus 289 FGl~~~e~~~~l~~l~~~~~L~~l~GLHf--H----iGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~ 362 (712)
.+.+..++.++.+.+++.|+ . +..+.+ | +++ .+.+...++++.+.+.+...+++|.+ +|.+.|+ ...
T Consensus 47 ~~~~~~~~~~l~~~l~~~Gl-~-i~~~~~~~~~~~~~~~--~d~~~r~~~~~~~~~~i~~a~~lG~~--~v~~~~~-~~~ 119 (284)
T PRK13210 47 LDWSKEERLSLVKAIYETGV-R-IPSMCLSGHRRFPFGS--RDPATRERALEIMKKAIRLAQDLGIR--TIQLAGY-DVY 119 (284)
T ss_pred ccCCHHHHHHHHHHHHHcCC-C-ceEEecccccCcCCCC--CCHHHHHHHHHHHHHHHHHHHHhCCC--EEEECCc-ccc
Confidence 34566778888888888885 5 666542 2 222 35666667777777777777777864 4666543 211
Q ss_pred cCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecC
Q 005135 363 YDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSES 408 (712)
Q Consensus 363 Y~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EP 408 (712)
+.. .+ .-.++.+.+.+.+ +.+.+.+.|+ +|.+|+
T Consensus 120 ~~~-~~-------~~~~~~~~~~l~~-l~~~a~~~gv---~l~lE~ 153 (284)
T PRK13210 120 YEE-KS-------EETRQRFIEGLAW-AVEQAAAAQV---MLAVEI 153 (284)
T ss_pred ccc-cc-------HHHHHHHHHHHHH-HHHHHHHhCC---EEEEEe
Confidence 111 00 1123344333333 2334456676 899998
No 89
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=60.68 E-value=35 Score=37.64 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=33.7
Q ss_pred CceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCC
Q 005135 262 RPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQ 322 (712)
Q Consensus 262 ~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSq 322 (712)
...|++|+++.... +=|++.+|..++++.+.+.+ ++ .||+|.|++
T Consensus 207 ~~~v~vRis~~d~~------------~~G~~~~e~~~i~~~l~~~g-vD---~i~vs~g~~ 251 (337)
T PRK13523 207 DGPLFVRISASDYH------------PGGLTVQDYVQYAKWMKEQG-VD---LIDVSSGAV 251 (337)
T ss_pred CCCeEEEecccccC------------CCCCCHHHHHHHHHHHHHcC-CC---EEEeCCCCC
Confidence 35799999864210 11788999999999998877 35 699999974
No 90
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=60.07 E-value=82 Score=36.46 Aligned_cols=31 Identities=23% Similarity=0.219 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCCceeEEEEecCCC
Q 005135 290 GLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQ 322 (712)
Q Consensus 290 Gl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSq 322 (712)
.+++.++.++++.+++...+. .++|+|-.++
T Consensus 188 ~l~P~~v~~Lv~alk~~~~~p--i~~H~Hnt~G 218 (468)
T PRK12581 188 ILTPKAAKELVSGIKAMTNLP--LIVHTHATSG 218 (468)
T ss_pred CcCHHHHHHHHHHHHhccCCe--EEEEeCCCCc
Confidence 357899999999998865553 5999998776
No 91
>PRK12677 xylose isomerase; Provisional
Probab=57.03 E-value=1.7e+02 Score=33.02 Aligned_cols=100 Identities=18% Similarity=0.188 Sum_probs=57.1
Q ss_pred HHHHHHHHHHcCCCCceeEEEE----e----cCC-CCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCC
Q 005135 296 ILRVVKKLEVAEMLDCFQLLHF----H----IGS-QIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGS 366 (712)
Q Consensus 296 ~~~~l~~l~~~~~L~~l~GLHf----H----iGS-qi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s 366 (712)
+.++.+.+++.|+ . +.++.. | .|+ -..+.+.-+.+++.+.+.++...++|.+.=.+- +|.-|.+|...
T Consensus 69 ~~~lk~~l~~~GL-~-v~~v~~n~f~~p~~~~g~lts~d~~~R~~Ai~~~~r~IdlA~eLGa~~Vvv~-~G~~g~~~~~~ 145 (384)
T PRK12677 69 IKRFKKALDETGL-V-VPMVTTNLFTHPVFKDGAFTSNDRDVRRYALRKVLRNIDLAAELGAKTYVMW-GGREGAEYDAA 145 (384)
T ss_pred HHHHHHHHHHcCC-e-eEEEecCCCCCccccCCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-eCCCCccCccc
Confidence 5556666667775 5 555521 2 122 123455556667777777777777887643332 44344444332
Q ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHHHHHh---cCCCCCeEEecCc
Q 005135 367 KSADSDLSVAYTLEEYASAVVQAIRYVCDR---KNVKHPVLCSESG 409 (712)
Q Consensus 367 ~~~~~~~s~~ysleeya~~Iv~~l~~~~~~---~gv~~p~Li~EPG 409 (712)
.++++..+..++.|+++++. .| ...+|.+||=
T Consensus 146 ----------~d~~~a~~~~~eaL~~l~~~A~~~G-~gV~laIEpk 180 (384)
T PRK12677 146 ----------KDVRAALDRYREAIDLLAAYVKDQG-YDLRFALEPK 180 (384)
T ss_pred ----------CCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEccC
Confidence 24666666677777776654 22 1237999984
No 92
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=56.76 E-value=2.6e+02 Score=29.35 Aligned_cols=102 Identities=17% Similarity=0.170 Sum_probs=57.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCceeEEE--EecCCC--CCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCc
Q 005135 288 KFGLTTTQILRVVKKLEVAEMLDCFQLLH--FHIGSQ--IPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDY 363 (712)
Q Consensus 288 KFGl~~~e~~~~l~~l~~~~~L~~l~GLH--fHiGSq--i~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y 363 (712)
..+++..++.++.+.+++.|+ . +.++. .|..-. ..+.+..+++++.+.+.+....++|.+ +|.++|+- ..+
T Consensus 51 ~~~~~~~~~~~l~~~l~~~gl-~-i~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~--~i~~~~~~-~~~ 125 (283)
T PRK13209 51 RLDWSREQRLALVNALVETGF-R-VNSMCLSAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIR--VIQLAGYD-VYY 125 (283)
T ss_pred ccCCCHHHHHHHHHHHHHcCC-c-eeEEecccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCC--EEEECCcc-ccc
Confidence 345677788888888888886 5 65554 232111 134555566677777777777777865 66676542 111
Q ss_pred CCCCCCCCCCCcCCCHHHHHHHHHHHHHH---HHHhcCCCCCeEEecCc
Q 005135 364 DGSKSADSDLSVAYTLEEYASAVVQAIRY---VCDRKNVKHPVLCSESG 409 (712)
Q Consensus 364 ~~s~~~~~~~s~~ysleeya~~Iv~~l~~---~~~~~gv~~p~Li~EPG 409 (712)
. .+.++..+.+++.+++ .+++.|+ +|.+|+-
T Consensus 126 ~------------~~~~~~~~~~~~~l~~l~~~A~~~GV---~i~iE~~ 159 (283)
T PRK13209 126 E------------QANNETRRRFIDGLKESVELASRASV---TLAFEIM 159 (283)
T ss_pred c------------ccHHHHHHHHHHHHHHHHHHHHHhCC---EEEEeec
Confidence 1 1123332333333333 4455676 8999984
No 93
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=56.52 E-value=2.6e+02 Score=30.67 Aligned_cols=104 Identities=13% Similarity=0.146 Sum_probs=61.9
Q ss_pred EEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHH-----HHHHHHHHHHHcCCCCceeEE
Q 005135 241 IVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTT-----QILRVVKKLEVAEMLDCFQLL 315 (712)
Q Consensus 241 IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~-----e~~~~l~~l~~~~~L~~l~GL 315 (712)
+...|+..|.++++...+.+++ ..|+.-..-+ +. | ...+|.... ++.++-+.++++++ -|
T Consensus 46 l~~~Nl~~l~~~L~~n~~~~I~---f~RisS~l~P---~a-s---h~~~~~~~~~~~~~~l~~iG~~a~~~~i-----RL 110 (312)
T TIGR00629 46 LGKANLRDTMKTLHWNIGHGIP---FYRFSSSIFP---FA-S---HPDVGYDLVTFAQKELREIGELAKTHQH-----RL 110 (312)
T ss_pred HHHHHHHHHHHHHHHHHHcCCc---EEecCccccC---cC-c---CchhhhhHHHHHHHHHHHHHHHHHHcCe-----EE
Confidence 4457888888888888777654 3576432210 10 0 112344332 33344444455543 48
Q ss_pred EEecCCCC----CChHHHHHHHHHHHHHHHHHHHcCCCC-------cEEEEcCCC
Q 005135 316 HFHIGSQI----PSTALLTDGVGEAAQIYCELVRLGANM-------QVIDIGGGL 359 (712)
Q Consensus 316 HfHiGSqi----~d~~~~~~ai~~~~~~~~~L~~~G~~l-------~~IDIGGGl 359 (712)
.+|.+-.+ .+.+.+.++++++..-..-|..+|.+- =+|-+||.+
T Consensus 111 S~Hp~qfi~LnS~~~evv~~Si~~L~~ha~~l~~mg~~~~~~~~~~iviH~Gg~~ 165 (312)
T TIGR00629 111 TFHPGQFTQFTSPRESVVKSAIRDLAYHDEMLSAMKLAEQLNKDAVIIIHIGGAF 165 (312)
T ss_pred EECCCccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccCCCceEEEccCcCC
Confidence 89988643 567888888988877777777777542 235666654
No 94
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=56.41 E-value=2.6e+02 Score=29.34 Aligned_cols=101 Identities=17% Similarity=0.230 Sum_probs=58.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCceeEEEE------ecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcC
Q 005135 289 FGLTTTQILRVVKKLEVAEMLDCFQLLHF------HIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGID 362 (712)
Q Consensus 289 FGl~~~e~~~~l~~l~~~~~L~~l~GLHf------HiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~ 362 (712)
.+.+..++.++.+.+++.|+ . +.++.+ .+++ .+....+++++.+.+.+..+.++|.+ +|-++|+ ...
T Consensus 47 ~~~~~~~~~~~~~~l~~~gl-~-i~~~~~~~~~~~~l~~--~~~~~r~~~~~~~~~~i~~a~~lG~~--~v~~~~~-~~~ 119 (279)
T TIGR00542 47 LDWSREQRLALVNAIIETGV-R-IPSMCLSAHRRFPLGS--KDKAVRQQGLEIMEKAIQLARDLGIR--TIQLAGY-DVY 119 (279)
T ss_pred cCCCHHHHHHHHHHHHHcCC-C-ceeeecCCCccCcCCC--cCHHHHHHHHHHHHHHHHHHHHhCCC--EEEecCc-ccc
Confidence 45677888888888998886 5 666642 1222 25566667777777777777778875 5556553 222
Q ss_pred cCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecC
Q 005135 363 YDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSES 408 (712)
Q Consensus 363 Y~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EP 408 (712)
+... . .-.++.+.+.+.+ +.++++++|+ +|.+|+
T Consensus 120 ~~~~-~-------~~~~~~~~~~l~~-l~~~A~~~Gv---~l~lE~ 153 (279)
T TIGR00542 120 YEEH-D-------EETRRRFREGLKE-AVELAARAQV---TLAVEI 153 (279)
T ss_pred cCcC-C-------HHHHHHHHHHHHH-HHHHHHHcCC---EEEEee
Confidence 2111 0 1123333333322 3345566777 899994
No 95
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=49.63 E-value=2.1e+02 Score=29.28 Aligned_cols=71 Identities=21% Similarity=0.180 Sum_probs=43.6
Q ss_pred hccCCCcEEEEECC-----HHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHc
Q 005135 232 ARKLDLNVVIVLEQ-----EEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVA 306 (712)
Q Consensus 232 ~~~~G~~v~IvVDs-----~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~ 306 (712)
++++|..+.+.++. .+++..+.+.+.+.|.. . |++. +|.| -+++.++.++++.+++.
T Consensus 117 ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~--i~l~----------Dt~G-----~~~P~~v~~lv~~~~~~ 178 (237)
T PF00682_consen 117 AKELGYEVAFGCEDASRTDPEELLELAEALAEAGAD-I--IYLA----------DTVG-----IMTPEDVAELVRALREA 178 (237)
T ss_dssp HHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-S-E--EEEE----------ETTS------S-HHHHHHHHHHHHHH
T ss_pred HHhcCCceEeCccccccccHHHHHHHHHHHHHcCCe-E--EEee----------CccC-----CcCHHHHHHHHHHHHHh
Confidence 44578877787764 55666665555555532 1 4443 2322 35788999999999865
Q ss_pred -CCCCceeEEEEecCCC
Q 005135 307 -EMLDCFQLLHFHIGSQ 322 (712)
Q Consensus 307 -~~L~~l~GLHfHiGSq 322 (712)
+.+ -.++|+|---+
T Consensus 179 ~~~~--~l~~H~Hnd~G 193 (237)
T PF00682_consen 179 LPDI--PLGFHAHNDLG 193 (237)
T ss_dssp STTS--EEEEEEBBTTS
T ss_pred ccCC--eEEEEecCCcc
Confidence 433 56999997655
No 96
>PRK06801 hypothetical protein; Provisional
Probab=49.40 E-value=3.7e+02 Score=29.06 Aligned_cols=131 Identities=17% Similarity=0.179 Sum_probs=76.9
Q ss_pred HHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHH
Q 005135 223 AGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKK 302 (712)
Q Consensus 223 ~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~ 302 (712)
.+.|..|.+ ...++. -+|+-+++.+..+++.|++.+. .|-|-+.+. ..+| ...+.+...++.
T Consensus 7 ~~~l~~A~~-~~yaV~-Afn~~n~e~~~avi~AAe~~~~--PvIl~~~~~-------------~~~~-~~~~~~~~~~~~ 68 (286)
T PRK06801 7 ANGLAHARK-HGYALG-AFNVLDSHFLRALFAAAKQERS--PFIINIAEV-------------HFKY-ISLESLVEAVKF 68 (286)
T ss_pred HHHHHHHHH-CCceEE-EEeeCCHHHHHHHHHHHHHHCC--CEEEEeCcc-------------hhhc-CCHHHHHHHHHH
Confidence 345566654 335554 6899999999999999998764 344554321 1233 345566666666
Q ss_pred HHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCCCCCCCCCCcCCCHHHH
Q 005135 303 LEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEEY 382 (712)
Q Consensus 303 l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s~~~~~~~s~~ysleey 382 (712)
+.+.-.+ -+.||.--|. +.+.+. +++ +.|+. .|.|+++ .++++|-
T Consensus 69 ~a~~~~v--pV~lHlDH~~---~~e~i~----~Ai-------~~Gft----------SVm~D~S---------~l~~eeN 113 (286)
T PRK06801 69 EAARHDI--PVVLNLDHGL---HFEAVV----RAL-------RLGFS----------SVMFDGS---------TLEYEEN 113 (286)
T ss_pred HHHHCCC--CEEEECCCCC---CHHHHH----HHH-------HhCCc----------EEEEcCC---------CCCHHHH
Confidence 5544333 3567764443 444333 221 23443 2334443 2466666
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEecCcc
Q 005135 383 ASAVVQAIRYVCDRKNVKHPVLCSESGR 410 (712)
Q Consensus 383 a~~Iv~~l~~~~~~~gv~~p~Li~EPGR 410 (712)
.+. ...+.++|..+|+ .|-.|.|.
T Consensus 114 i~~-t~~v~~~a~~~gv---~VE~ElG~ 137 (286)
T PRK06801 114 VRQ-TREVVKMCHAVGV---SVEAELGA 137 (286)
T ss_pred HHH-HHHHHHHHHHcCC---eEEeecCc
Confidence 554 3446678888887 58899998
No 97
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=49.23 E-value=23 Score=42.72 Aligned_cols=17 Identities=12% Similarity=0.317 Sum_probs=9.8
Q ss_pred CCCCCHHhhhhhhcCCCCCC
Q 005135 61 SSHWSPSHSASLYKIDSWGA 80 (712)
Q Consensus 61 ~~~w~~~~~~~ly~i~~wg~ 80 (712)
++.|.++.++.- .+|++
T Consensus 617 KK~~k~e~~Mrr---~nW~k 633 (1102)
T KOG1924|consen 617 KKVYKPEVPMRR---FNWSK 633 (1102)
T ss_pred cccCCCCCcccc---CCccc
Confidence 335766666543 25776
No 98
>KOG4127 consensus Renal dipeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=49.02 E-value=84 Score=35.05 Aligned_cols=58 Identities=22% Similarity=0.302 Sum_probs=34.0
Q ss_pred HHHHHHHHcCCCCceeEEEEecCC-CCCChHHHHHHHHHHHHHHHHHHH-cCCCCcEEEEcCCC-CcCcC
Q 005135 298 RVVKKLEVAEMLDCFQLLHFHIGS-QIPSTALLTDGVGEAAQIYCELVR-LGANMQVIDIGGGL-GIDYD 364 (712)
Q Consensus 298 ~~l~~l~~~~~L~~l~GLHfHiGS-qi~d~~~~~~ai~~~~~~~~~L~~-~G~~l~~IDIGGGl-gv~Y~ 364 (712)
+++++++++|. ++.+.|..+- ++.+-.. +.+++.-+..+++ .| ++.|-||||| |+++.
T Consensus 289 dVL~llk~NgG---vVMVnfy~~~isc~~~A~----v~~v~~Hi~hIr~VaG--~~hIGlGg~yDGi~~~ 349 (419)
T KOG4127|consen 289 DVLQLLKENGG---VVMVNFYPGFISCSDRAT----VSDVADHINHIRAVAG--IDHIGLGGDYDGIPRV 349 (419)
T ss_pred HHHHHHhhcCC---EEEEEeecccccCCCccc----HHHHHHHHHHHHHhhc--cceeeccCCcCCcCCC
Confidence 46777888887 6788888742 1222222 3333333333444 25 7889889887 55543
No 99
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=48.31 E-value=1.3e+02 Score=32.62 Aligned_cols=52 Identities=27% Similarity=0.286 Sum_probs=37.0
Q ss_pred HHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCC
Q 005135 255 ISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQ 322 (712)
Q Consensus 255 ~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSq 322 (712)
+.+..+....|++|+++... ...|++.+++.++++.+.+.+. + .||+|.|..
T Consensus 201 vr~~~g~d~~i~vris~~~~------------~~~g~~~~e~~~la~~l~~~G~-d---~i~vs~g~~ 252 (327)
T cd02803 201 VREAVGPDFPVGVRLSADDF------------VPGGLTLEEAIEIAKALEEAGV-D---ALHVSGGSY 252 (327)
T ss_pred HHHHcCCCceEEEEechhcc------------CCCCCCHHHHHHHHHHHHHcCC-C---EEEeCCCCC
Confidence 33345556689999986421 1236888999999999998873 4 688888875
No 100
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=48.11 E-value=1.6e+02 Score=35.29 Aligned_cols=32 Identities=31% Similarity=0.191 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCC
Q 005135 290 GLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQI 323 (712)
Q Consensus 290 Gl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi 323 (712)
++.+.++.++++.+++.-.+ -.++|+|--+..
T Consensus 179 ~~~P~~~~~lv~~lk~~~~~--pi~~H~Hnt~Gl 210 (592)
T PRK09282 179 LLTPYAAYELVKALKEEVDL--PVQLHSHCTSGL 210 (592)
T ss_pred CcCHHHHHHHHHHHHHhCCC--eEEEEEcCCCCc
Confidence 56889999999999875324 369999987763
No 101
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=47.73 E-value=34 Score=36.31 Aligned_cols=90 Identities=16% Similarity=0.110 Sum_probs=60.8
Q ss_pred cCCcHHHHHHHHHcCCCC------ccceEecCHHHHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEE
Q 005135 170 CNQDRFVVEDIVKFGSQF------RFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVL 243 (712)
Q Consensus 170 aN~~~~Vl~~l~~~G~~~------~~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvV 243 (712)
.-+++.+++.+...|-.| +-.++......+..|.+.. +-..++--+..+...|..+|+++..|+ ++-.|
T Consensus 26 ~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~----g~~~lVRvp~~~~~~i~r~LD~Ga~gi-ivP~v 100 (256)
T PRK10558 26 ALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGS----ASAPVVRVPTNEPVIIKRLLDIGFYNF-LIPFV 100 (256)
T ss_pred cCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhc----CCCcEEECCCCCHHHHHHHhCCCCCee-eecCc
Confidence 356789999999988543 2233334444444444432 123456667789999999999766665 35689
Q ss_pred CCHHHHHHHHHHHHhcCCCceEEEE
Q 005135 244 EQEEEVDLVIEISKKLNVRPVIGAR 268 (712)
Q Consensus 244 Ds~~EL~~I~~~a~~~g~~~~IgLR 268 (712)
++.+|.+.+.+.++- |..|.|
T Consensus 101 ~tae~a~~~v~a~ky----pP~G~R 121 (256)
T PRK10558 101 ETAEEARRAVASTRY----PPEGIR 121 (256)
T ss_pred CCHHHHHHHHHHcCC----CCCCcC
Confidence 999999999887753 566665
No 102
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=46.81 E-value=3.5e+02 Score=27.94 Aligned_cols=138 Identities=22% Similarity=0.225 Sum_probs=73.6
Q ss_pred cCCcHHHHHHHHHcCCCCccceEecCHH------------HHHHHHHhcCCCCCCcE-EEeCCCCCHHHHHHHHHhccCC
Q 005135 170 CNQDRFVVEDIVKFGSQFRFGLEAGSKP------------ELLLAMSCLCKGSPEAL-LVCNGFKDAGYITLALLARKLD 236 (712)
Q Consensus 170 aN~~~~Vl~~l~~~G~~~~~GlEvaS~~------------EL~~Al~~G~~~~p~~I-I~~ng~K~~e~I~~Al~~~~~G 236 (712)
......+++.|.+.|.. .+|+++.. |+...+..- .+..++ .++.+. .+.++.+.++..-.
T Consensus 18 ~e~~~~i~~~L~~~GV~---~IEvg~~~~~~~~p~~~~~~~~i~~l~~~--~~~~~~~~l~~~~--~~~i~~a~~~g~~~ 90 (265)
T cd03174 18 TEDKLEIAEALDEAGVD---SIEVGSGASPKAVPQMEDDWEVLRAIRKL--VPNVKLQALVRNR--EKGIERALEAGVDE 90 (265)
T ss_pred HHHHHHHHHHHHHcCCC---EEEeccCcCccccccCCCHHHHHHHHHhc--cCCcEEEEEccCc--hhhHHHHHhCCcCE
Confidence 34456788999999973 46666443 322222221 122344 233221 66788888743222
Q ss_pred CcEEEEEC--------------CHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCC--CCHHHHHHHH
Q 005135 237 LNVVIVLE--------------QEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFG--LTTTQILRVV 300 (712)
Q Consensus 237 ~~v~IvVD--------------s~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFG--l~~~e~~~~l 300 (712)
+++.+... .++++...++.+++.|.. +++++. .-|+ .+.+++.+++
T Consensus 91 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~----v~~~~~--------------~~~~~~~~~~~l~~~~ 152 (265)
T cd03174 91 VRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLE----VEGSLE--------------DAFGCKTDPEYVLEVA 152 (265)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe----EEEEEE--------------eecCCCCCHHHHHHHH
Confidence 22222222 345555556666666543 344331 1134 7889999999
Q ss_pred HHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHH
Q 005135 301 KKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEA 336 (712)
Q Consensus 301 ~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~ 336 (712)
+++.+.|. + ...|-=..| ...++.+.+.++.+
T Consensus 153 ~~~~~~g~-~-~i~l~Dt~G--~~~P~~v~~li~~l 184 (265)
T cd03174 153 KALEEAGA-D-EISLKDTVG--LATPEEVAELVKAL 184 (265)
T ss_pred HHHHHcCC-C-EEEechhcC--CcCHHHHHHHHHHH
Confidence 99999884 4 333443455 45676555444443
No 103
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=46.62 E-value=4.6e+02 Score=29.32 Aligned_cols=154 Identities=12% Similarity=0.024 Sum_probs=79.6
Q ss_pred HHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCC---C-CCCCCCCH--HHH
Q 005135 223 AGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSG---E-KGKFGLTT--TQI 296 (712)
Q Consensus 223 ~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg---~-~SKFGl~~--~e~ 296 (712)
.+.|..|.+ ...++. -+|+-+++.+.-+++.|.+.+. .|.|-+.+... ++ .++ . ..+|-+-. ..+
T Consensus 10 k~~L~~A~~-~~yAV~-AfNv~n~e~~~avi~AAee~~s--PVIlq~s~~~~---~~--~~g~~~~~~~~~~~~~~~~~~ 80 (350)
T PRK09197 10 QEMFDRAKE-NGFALP-AVNVVGTDSINAVLEGAAEAKS--PVIIQFSNGGA---AF--IAGKGVKDDGQGAAVLGAIAG 80 (350)
T ss_pred HHHHHHHHH-CCceEE-EEEeCCHHHHHHHHHHHHHHCC--CEEEEcChhhH---hh--cCCccccccchhhhhhhHHHH
Confidence 345555554 234444 6899999999999999998764 34444433210 00 011 0 00111100 113
Q ss_pred HHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCCCCCCCCCCcC
Q 005135 297 LRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSADSDLSVA 376 (712)
Q Consensus 297 ~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s~~~~~~~s~~ 376 (712)
...++.+.+.-.+ -+.||.--|.. .+.+.++++++...+.+...-+.|+. .|.+|+|.
T Consensus 81 ~~~v~~~A~~~~V--PValHLDHg~~-~~~~~i~~ai~~g~~~v~~a~~~gft----------SVMiDgS~--------- 138 (350)
T PRK09197 81 AKHVHEVAEHYGV--PVILHTDHCAK-KLLPWIDGLLDAGEKHFAAGGKPLFS----------SHMIDLSE--------- 138 (350)
T ss_pred HHHHHHHHHHCCC--CEEEECCCCCC-cchHHHHHHHHhhHHHHHhcCCCCce----------eEEeeCCC---------
Confidence 3444444332223 35677654431 22555565655543433332223333 33444442
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCcch
Q 005135 377 YTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRA 411 (712)
Q Consensus 377 ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPGRa 411 (712)
++++|=.+...+ +.++|...|+ .+-.|.|+-
T Consensus 139 lpfEeNI~~Tke-vVe~Ah~~Gv---sVEaELG~I 169 (350)
T PRK09197 139 EPLEENIEICSK-YLERMAKAGM---TLEIELGVT 169 (350)
T ss_pred CCHHHHHHHHHH-HHHHHHHcCC---EEEEEEecc
Confidence 567776665444 4457778887 799999984
No 104
>PRK00915 2-isopropylmalate synthase; Validated
Probab=46.19 E-value=5.5e+02 Score=30.08 Aligned_cols=143 Identities=17% Similarity=0.127 Sum_probs=70.0
Q ss_pred ceeeeeeccCCcHHHHHHHHHcCCCCcc-ceEecCHHHHHHHHHhcCCCCCCcEEEeCCC----------CCHHHHH---
Q 005135 162 YQGVFPVKCNQDRFVVEDIVKFGSQFRF-GLEAGSKPELLLAMSCLCKGSPEALLVCNGF----------KDAGYIT--- 227 (712)
Q Consensus 162 ~~~~YavKaN~~~~Vl~~l~~~G~~~~~-GlEvaS~~EL~~Al~~G~~~~p~~II~~ng~----------K~~e~I~--- 227 (712)
+.+-||.-.......++.+.+.+..-.+ ++-=+...+++.+++++......+|-+..+. ++.+++.
T Consensus 43 IE~G~p~~s~~d~~~v~~i~~~~~~~~i~a~~r~~~~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~ 122 (513)
T PRK00915 43 IEAGFPASSPGDFEAVKRIARTVKNSTVCGLARAVKKDIDAAAEALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMA 122 (513)
T ss_pred EEEcCCCCChHHHHHHHHHHhhCCCCEEEEEccCCHHHHHHHHHHhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHH
Confidence 3445554333445556666554421111 1111447778888854321122344333332 2222211
Q ss_pred -HHH-HhccCCCcEEEEECC-----HHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHH
Q 005135 228 -LAL-LARKLDLNVVIVLEQ-----EEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVV 300 (712)
Q Consensus 228 -~Al-~~~~~G~~v~IvVDs-----~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l 300 (712)
.++ .++++|..+.+..++ ++.+..+.+.+.+.|.. ||++. +|.| .+++.++.+++
T Consensus 123 ~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~-----~i~l~--------DTvG-----~~~P~~~~~~i 184 (513)
T PRK00915 123 VEAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAAIDAGAT-----TINIP--------DTVG-----YTTPEEFGELI 184 (513)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHcCCC-----EEEEc--------cCCC-----CCCHHHHHHHH
Confidence 111 134467777676643 33344444444444432 34433 2322 46788999999
Q ss_pred HHHHHc-CCC-CceeEEEEecCCC
Q 005135 301 KKLEVA-EML-DCFQLLHFHIGSQ 322 (712)
Q Consensus 301 ~~l~~~-~~L-~~l~GLHfHiGSq 322 (712)
+.+++. +.. +...++|+|--.+
T Consensus 185 ~~l~~~~~~~~~v~l~~H~HND~G 208 (513)
T PRK00915 185 KTLRERVPNIDKAIISVHCHNDLG 208 (513)
T ss_pred HHHHHhCCCcccceEEEEecCCCC
Confidence 988764 320 0146999997665
No 105
>COG1638 DctP TRAP-type C4-dicarboxylate transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=44.74 E-value=1.7e+02 Score=32.37 Aligned_cols=116 Identities=15% Similarity=0.268 Sum_probs=77.1
Q ss_pred CCccEEEecCCCCcCCcCCcCHHHHHHHhCCCC------CCCCC-------C-CCCcEEEEcHHHHHHHHH-HHHHHHHH
Q 005135 87 PSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPK------SVGGL-------G-LQLPLIVRLPDVLRDRLE-SLHSAFEF 151 (712)
Q Consensus 87 ~~G~l~v~p~~~~~l~~~~i~l~el~~~~~~~~------~~~~~-------g-~~tPl~V~d~d~L~~ni~-~l~~af~~ 151 (712)
.+|.|.|..+.+.+|- +=.+.+++++... |.+.+ + +..|+++.|.+.+++-++ .+-+.+.+
T Consensus 57 t~G~l~i~vfP~~qLG----~~~~~ie~l~~G~id~~~~s~~~l~~~~P~~~v~~lPflf~d~~~~~~~~~~~~g~~l~~ 132 (332)
T COG1638 57 TGGRLKIEVFPNSQLG----GEAEMIEQLRSGTLDIGVVSLGFLAGLVPEFGVFDLPFLFRDEEHARRVLDSEFGEELLK 132 (332)
T ss_pred hCCeEEEEECCCcccC----cHHHHHHHHhcCCeeEEeccchhhcccCCcceeecCCeeeCCHHHHHHHHccHHHHHHHH
Confidence 4788888877665552 2344444443321 00110 0 379999999999888877 66666666
Q ss_pred hHHhcCCC------Ccceeeeeec---------------cCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHhcCCCC
Q 005135 152 AIQTQGYE------ARYQGVFPVK---------------CNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGS 210 (712)
Q Consensus 152 a~~~~~y~------~~~~~~YavK---------------aN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~G~~~~ 210 (712)
.++..|+. ..+|-+|+-| +.+++..++.+..+|+ --.-.+.+|+..||..|. ++
T Consensus 133 ~~e~~g~~~l~~~~~G~R~~t~~k~PI~~peDlkGlkiRv~~s~~~~~~~~a~GA----~P~pm~f~Evy~aLqtGv-VD 207 (332)
T COG1638 133 SLEAKGLKGLAFWENGFRQFTSNKRPIKTPEDLKGLKIRVPQSPLLLAMFKALGA----NPTPMPFAEVYTALQTGV-VD 207 (332)
T ss_pred HHHHcCCEEEEEecCceeeeecCCCCCCChHHhCCCeeecCCCHHHHHHHHHcCC----CCCCCCHHHHHHHHHcCC-cc
Confidence 66666542 2356666644 7778999999999995 345788999999999995 44
Q ss_pred C
Q 005135 211 P 211 (712)
Q Consensus 211 p 211 (712)
.
T Consensus 208 G 208 (332)
T COG1638 208 G 208 (332)
T ss_pred c
Confidence 3
No 106
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=44.27 E-value=40 Score=35.63 Aligned_cols=90 Identities=16% Similarity=0.131 Sum_probs=60.3
Q ss_pred cCCcHHHHHHHHHcCCCC------ccceEecCHHHHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEE
Q 005135 170 CNQDRFVVEDIVKFGSQF------RFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVL 243 (712)
Q Consensus 170 aN~~~~Vl~~l~~~G~~~------~~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvV 243 (712)
.-+++.+++.+...|-.| +-.++..+...+..|.+.. +-..++--+..+...|+.+|+++..|+ ++-.|
T Consensus 19 ~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~----g~~~~VRvp~~~~~~i~r~LD~Ga~gI-ivP~v 93 (249)
T TIGR03239 19 ALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGS----ASAPVVRPPWNEPVIIKRLLDIGFYNF-LIPFV 93 (249)
T ss_pred cCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhc----CCCcEEECCCCCHHHHHHHhcCCCCEE-EecCc
Confidence 456789999999988543 2233334444444444432 122355667789999999999766664 35689
Q ss_pred CCHHHHHHHHHHHHhcCCCceEEEE
Q 005135 244 EQEEEVDLVIEISKKLNVRPVIGAR 268 (712)
Q Consensus 244 Ds~~EL~~I~~~a~~~g~~~~IgLR 268 (712)
++.+|.+.+.+.++- |..|.|
T Consensus 94 ~taeea~~~v~a~ky----pP~G~R 114 (249)
T TIGR03239 94 ESAEEAERAVAATRY----PPEGIR 114 (249)
T ss_pred CCHHHHHHHHHHcCC----CCCCcC
Confidence 999999999887753 566665
No 107
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=43.49 E-value=2.4e+02 Score=29.06 Aligned_cols=91 Identities=22% Similarity=0.292 Sum_probs=45.0
Q ss_pred HHHHHHHHHHcCCCCceeEEEEecCCC---------CCC-hHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCC
Q 005135 296 ILRVVKKLEVAEMLDCFQLLHFHIGSQ---------IPS-TALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDG 365 (712)
Q Consensus 296 ~~~~l~~l~~~~~L~~l~GLHfHiGSq---------i~d-~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~ 365 (712)
+.++.+.+++.|+ + +.++|+..+.- .++ ...+.+.+++++++ +.++|. +.|.+.-|.. +.
T Consensus 41 ~~~l~~~l~~~gl-~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---a~~lg~--~~i~~~~g~~-~~-- 110 (254)
T TIGR03234 41 AEALKARLAAAGL-E-QVLFNLPAGDWAAGERGIACLPGREEEFREGVALAIAY---ARALGC--PQVNCLAGKR-PA-- 110 (254)
T ss_pred HHHHHHHHHHcCC-e-EEEEeCCCCccccCCCccccCCccHHHHHHHHHHHHHH---HHHhCC--CEEEECcCCC-CC--
Confidence 3444555667775 6 77877655421 011 12223344444433 345565 4666665531 11
Q ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHHH---HHHhcCCCCCeEEecCc
Q 005135 366 SKSADSDLSVAYTLEEYASAVVQAIRY---VCDRKNVKHPVLCSESG 409 (712)
Q Consensus 366 s~~~~~~~s~~ysleeya~~Iv~~l~~---~~~~~gv~~p~Li~EPG 409 (712)
+.+.++.-+.+++.+++ ++++.|+ +|.+||-
T Consensus 111 ----------~~~~~~~~~~~~~~l~~l~~~A~~~gi---~l~lE~~ 144 (254)
T TIGR03234 111 ----------GVSPEEARATLVENLRYAADALDRIGL---TLLIEPI 144 (254)
T ss_pred ----------CCCHHHHHHHHHHHHHHHHHHHHhcCC---EEEEEEC
Confidence 12344444444444444 4555665 7999873
No 108
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=40.02 E-value=4.8e+02 Score=27.68 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHHHHHc-CCCCceeEEEEecCCC
Q 005135 290 GLTTTQILRVVKKLEVA-EMLDCFQLLHFHIGSQ 322 (712)
Q Consensus 290 Gl~~~e~~~~l~~l~~~-~~L~~l~GLHfHiGSq 322 (712)
.+++.++.++++.+++. +.+. .++|+|---+
T Consensus 176 ~~~P~~v~~lv~~l~~~~~~~~--l~~H~Hnd~G 207 (273)
T cd07941 176 GTLPHEIAEIVKEVRERLPGVP--LGIHAHNDSG 207 (273)
T ss_pred CCCHHHHHHHHHHHHHhCCCCe--eEEEecCCCC
Confidence 36788999999998764 5343 5999997554
No 109
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=39.85 E-value=1e+02 Score=34.51 Aligned_cols=60 Identities=20% Similarity=0.161 Sum_probs=38.5
Q ss_pred hcCCCceEEEEEeeCCCCCCCccc---cCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCC
Q 005135 258 KLNVRPVIGARAKLRTKHSGHFGS---TSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQ 322 (712)
Q Consensus 258 ~~g~~~~IgLRVn~~~~~~~~~~~---tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSq 322 (712)
..+....|++|+++.....+ |.. .+.+...-|++.++..++++++.+.|. + -||+|.|++
T Consensus 214 ~~g~~f~v~vri~~~~~~~~-~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gv-D---~l~vs~g~~ 276 (382)
T cd02931 214 RCGEDFPVSLRYSVKSYIKD-LRQGALPGEEFQEKGRDLEEGLKAAKILEEAGY-D---ALDVDAGSY 276 (382)
T ss_pred hcCCCceEEEEEechhhccc-cccccccccccccCCCCHHHHHHHHHHHHHhCC-C---EEEeCCCCC
Confidence 34545689999996421100 000 011123459999999999999998873 5 589998874
No 110
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=39.83 E-value=5.2e+02 Score=27.99 Aligned_cols=135 Identities=15% Similarity=0.135 Sum_probs=77.5
Q ss_pred HHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHH
Q 005135 223 AGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKK 302 (712)
Q Consensus 223 ~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~ 302 (712)
.+-|..|.+ ...++. -+++-+.+.+.-+++.|++.+.+ |.|-+.+. ..+|....+.+..+++.
T Consensus 7 ~~lL~~A~~-~~yAV~-AfN~~n~e~~~avi~AAe~~~sP--vIiq~~~~-------------~~~~~~~~~~~~~~~~~ 69 (285)
T PRK07709 7 KEMLNKALE-GKYAVG-QFNMNNLEWTQAILAAAEEEKSP--VILGVSEG-------------AARHMTGFKTVVAMVKA 69 (285)
T ss_pred HHHHHHHHH-CCceEE-EEEECCHHHHHHHHHHHHHHCCC--EEEEcCcc-------------hhhhcCCHHHHHHHHHH
Confidence 455666654 335555 68999999999999999987643 44444321 23443344556666665
Q ss_pred HHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCCCCCCCCCCcCCCHHHH
Q 005135 303 LEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEEY 382 (712)
Q Consensus 303 l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s~~~~~~~s~~ysleey 382 (712)
+.+.-...--+.||.--|. +.+.+++++ +.|+. .|.+|+|. ++++|=
T Consensus 70 ~a~~~~~~VPV~lHLDHg~---~~e~i~~ai-----------~~Gft----------SVM~DgS~---------lp~eeN 116 (285)
T PRK07709 70 LIEEMNITVPVAIHLDHGS---SFEKCKEAI-----------DAGFT----------SVMIDASH---------HPFEEN 116 (285)
T ss_pred HHHHcCCCCcEEEECCCCC---CHHHHHHHH-----------HcCCC----------EEEEeCCC---------CCHHHH
Confidence 5543221102456654443 555444332 23443 33445542 467766
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEecCcch
Q 005135 383 ASAVVQAIRYVCDRKNVKHPVLCSESGRA 411 (712)
Q Consensus 383 a~~Iv~~l~~~~~~~gv~~p~Li~EPGRa 411 (712)
.+...+ +-+++...|+ .+-.|.|+-
T Consensus 117 i~~Tre-vv~~Ah~~gv---~VEaElG~i 141 (285)
T PRK07709 117 VETTKK-VVEYAHARNV---SVEAELGTV 141 (285)
T ss_pred HHHHHH-HHHHHHHcCC---EEEEEEecc
Confidence 655444 4457777787 688998884
No 111
>PRK12999 pyruvate carboxylase; Reviewed
Probab=39.17 E-value=2.5e+02 Score=36.41 Aligned_cols=95 Identities=14% Similarity=0.064 Sum_probs=50.1
Q ss_pred HHHHHHHHHhccCCCcEEEEECCHHHHHHHHH---HHHhcCCCceEEEEEee---C-CCCCCC---cc-------ccCC-
Q 005135 223 AGYITLALLARKLDLNVVIVLEQEEEVDLVIE---ISKKLNVRPVIGARAKL---R-TKHSGH---FG-------STSG- 284 (712)
Q Consensus 223 ~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~---~a~~~g~~~~IgLRVn~---~-~~~~~~---~~-------~tgg- 284 (712)
.++++.|.+ .|+.++-++|++.+++.+.. .+++.|....+.+-..- + +...+. +. ..|-
T Consensus 630 ~~~i~~a~~---~Gid~~rifd~lnd~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~ 706 (1146)
T PRK12999 630 RAFVREAAA---AGIDVFRIFDSLNWVENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAGAH 706 (1146)
T ss_pred HHHHHHHHH---cCCCEEEEeccCChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 455777665 56776667777776655444 34455544334443330 0 110000 00 0010
Q ss_pred ---CCCCCC-CCHHHHHHHHHHHHHcCCCCceeEEEEecCCC
Q 005135 285 ---EKGKFG-LTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQ 322 (712)
Q Consensus 285 ---~~SKFG-l~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSq 322 (712)
..--.| +++.++.++++.+++.-.+ -.++|+|--+.
T Consensus 707 ~i~ikDt~G~l~P~~~~~lv~~lk~~~~i--pi~~H~Hnt~G 746 (1146)
T PRK12999 707 ILAIKDMAGLLKPAAAYELVSALKEEVDL--PIHLHTHDTSG 746 (1146)
T ss_pred EEEECCccCCCCHHHHHHHHHHHHHHcCC--eEEEEeCCCCc
Confidence 011124 4678899999999875334 35888887765
No 112
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=38.33 E-value=5.5e+02 Score=28.86 Aligned_cols=98 Identities=16% Similarity=0.235 Sum_probs=53.6
Q ss_pred HHHHHHHHHHcCCCCceeEEEE----ec----CC-CCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEE-cCCCCcCcCC
Q 005135 296 ILRVVKKLEVAEMLDCFQLLHF----HI----GS-QIPSTALLTDGVGEAAQIYCELVRLGANMQVIDI-GGGLGIDYDG 365 (712)
Q Consensus 296 ~~~~l~~l~~~~~L~~l~GLHf----Hi----GS-qi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDI-GGGlgv~Y~~ 365 (712)
+.++-+.+++.|+ . +.++.. |- |+ -..+.+..+.+++.+.+.++...++|.+ .|.+ +|-.|.+|..
T Consensus 70 ~~~lk~~L~~~GL-~-v~~v~~nl~~~~~~~~g~las~d~~vR~~ai~~~kraId~A~eLGa~--~v~v~~G~~g~~~~~ 145 (382)
T TIGR02631 70 VRRFKKALDETGL-K-VPMVTTNLFSHPVFKDGGFTSNDRSVRRYALRKVLRNMDLGAELGAE--TYVVWGGREGAEYDG 145 (382)
T ss_pred HHHHHHHHHHhCC-e-EEEeeccccCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC--EEEEccCCCCCcCcc
Confidence 3455556677775 4 444332 21 11 1225555677788887777767778876 3444 4434444432
Q ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHHHHHH---hcCCCCCeEEecC
Q 005135 366 SKSADSDLSVAYTLEEYASAVVQAIRYVCD---RKNVKHPVLCSES 408 (712)
Q Consensus 366 s~~~~~~~s~~ysleeya~~Iv~~l~~~~~---~~gv~~p~Li~EP 408 (712)
. -+.++.-+..++.|+++++ +.|. ..+|.+||
T Consensus 146 ~----------~d~~~a~~~~~e~L~~lae~A~~~G~-GV~laLEp 180 (382)
T TIGR02631 146 A----------KDVRAALDRMREALNLLAAYAEDQGY-GLRFALEP 180 (382)
T ss_pred c----------cCHHHHHHHHHHHHHHHHHHHHhhCC-CcEEEEcc
Confidence 2 2345555555666666553 3321 13899998
No 113
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=38.09 E-value=2.7e+02 Score=32.67 Aligned_cols=31 Identities=23% Similarity=0.179 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHHHHcC--CCCceeEEEEecCCCC
Q 005135 291 LTTTQILRVVKKLEVAE--MLDCFQLLHFHIGSQI 323 (712)
Q Consensus 291 l~~~e~~~~l~~l~~~~--~L~~l~GLHfHiGSqi 323 (712)
+++.++.++++.+++.- .+ -.++|+|--++.
T Consensus 181 l~P~~~~~LV~~Lk~~~~~~i--pI~~H~Hnt~Gl 213 (499)
T PRK12330 181 LKPQPAYDIVKGIKEACGEDT--RINLHCHSTTGV 213 (499)
T ss_pred CCHHHHHHHHHHHHHhCCCCC--eEEEEeCCCCCc
Confidence 57889999999998752 44 458999987763
No 114
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=37.74 E-value=6e+02 Score=28.07 Aligned_cols=122 Identities=14% Similarity=0.104 Sum_probs=66.2
Q ss_pred ceEecCHHHHHHHHHhcCCCCCCcEE-EeC-CCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEE
Q 005135 190 GLEAGSKPELLLAMSCLCKGSPEALL-VCN-GFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGA 267 (712)
Q Consensus 190 GlEvaS~~EL~~Al~~G~~~~p~~II-~~n-g~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgL 267 (712)
|+-..+..|...++... .+..++. ++. +.-+.+.++.|..++.-.+++.+.....+.+....+.++++|.. +
T Consensus 58 g~~~~~~~e~i~~~~~~--~~~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~----v 131 (337)
T PRK08195 58 GFGAHTDEEYIEAAAEV--VKQAKIAALLLPGIGTVDDLKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMD----T 131 (337)
T ss_pred CCCCCCHHHHHHHHHHh--CCCCEEEEEeccCcccHHHHHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCe----E
Confidence 34444666765555433 2344543 233 34567889999874322223334445555666666777777654 2
Q ss_pred EEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHH
Q 005135 268 RAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGE 335 (712)
Q Consensus 268 RVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~ 335 (712)
.+++.. . +-.+++++.+.++++.+.|- ++ +.+=-......++.+.+-++.
T Consensus 132 ~~~l~~---------a-----~~~~~e~l~~~a~~~~~~Ga-~~---i~i~DT~G~~~P~~v~~~v~~ 181 (337)
T PRK08195 132 VGFLMM---------S-----HMAPPEKLAEQAKLMESYGA-QC---VYVVDSAGALLPEDVRDRVRA 181 (337)
T ss_pred EEEEEe---------c-----cCCCHHHHHHHHHHHHhCCC-CE---EEeCCCCCCCCHHHHHHHHHH
Confidence 333321 1 13578899999999988875 42 333222234567654444333
No 115
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=37.24 E-value=4.9e+02 Score=26.93 Aligned_cols=54 Identities=6% Similarity=-0.119 Sum_probs=24.1
Q ss_pred cHHHHHHHHHc-CCCCccceEecCHHHHHHHHHhcCCCCCCcEEEeCC-CCCHHHHHHHHH
Q 005135 173 DRFVVEDIVKF-GSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNG-FKDAGYITLALL 231 (712)
Q Consensus 173 ~~~Vl~~l~~~-G~~~~~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng-~K~~e~I~~Al~ 231 (712)
+..+++.+.+. +.+..+|--+.|...++..+.+|. +++++..- .++ +.++.+++
T Consensus 66 n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~Ga----~~viigt~~~~~-~~~~~~~~ 121 (233)
T cd04723 66 NDEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGA----SRVIVGTETLPS-DDDEDRLA 121 (233)
T ss_pred cHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcCC----CeEEEcceeccc-hHHHHHHH
Confidence 34455555543 222223334455555555555552 34444332 344 44555443
No 116
>PRK08185 hypothetical protein; Provisional
Probab=37.19 E-value=5.7e+02 Score=27.66 Aligned_cols=128 Identities=14% Similarity=0.171 Sum_probs=75.1
Q ss_pred HHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCC-CCCCHHHHHHHHHH
Q 005135 224 GYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGK-FGLTTTQILRVVKK 302 (712)
Q Consensus 224 e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SK-FGl~~~e~~~~l~~ 302 (712)
+.|..|.+ .+.++. -+++-|++.+.-+++.|++.+.+ |-|-+.+.. .| .| .++...++.
T Consensus 3 ~~L~~A~~-~~yaV~-AfN~~n~e~~~avi~AAee~~sP--vIl~~~~~~-------------~~~~~---~~~~~~~~~ 62 (283)
T PRK08185 3 ELLKVAKE-HQFAVG-AFNVADSCFLRAVVEEAEANNAP--AIIAIHPNE-------------LDFLG---DNFFAYVRE 62 (283)
T ss_pred HHHHHHHH-cCceEE-EEEeCCHHHHHHHHHHHHHhCCC--EEEEeCcch-------------hhhcc---HHHHHHHHH
Confidence 45566654 335555 68999999999999999987654 444443211 12 23 225555554
Q ss_pred HHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCCCCCCCCCCcCCCHHHH
Q 005135 303 LEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEEY 382 (712)
Q Consensus 303 l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s~~~~~~~s~~ysleey 382 (712)
+.+.-.+. +.||.--|. +.+.+++++ +.|+.- |.++++ .++++|+
T Consensus 63 ~a~~~~vP--V~lHLDHg~---~~e~i~~ai-----------~~Gf~S----------VM~D~S---------~l~~eeN 107 (283)
T PRK08185 63 RAKRSPVP--FVIHLDHGA---TIEDVMRAI-----------RCGFTS----------VMIDGS---------LLPYEEN 107 (283)
T ss_pred HHHHCCCC--EEEECCCCC---CHHHHHHHH-----------HcCCCE----------EEEeCC---------CCCHHHH
Confidence 44332333 456654443 555443332 234432 344443 3678888
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEecCcc
Q 005135 383 ASAVVQAIRYVCDRKNVKHPVLCSESGR 410 (712)
Q Consensus 383 a~~Iv~~l~~~~~~~gv~~p~Li~EPGR 410 (712)
.+...+ +.++|..+|+ .+-.|.|+
T Consensus 108 i~~t~~-vv~~a~~~gv---~vE~ElG~ 131 (283)
T PRK08185 108 VALTKE-VVELAHKVGV---SVEGELGT 131 (283)
T ss_pred HHHHHH-HHHHHHHcCC---eEEEEEee
Confidence 775544 5567888887 58888888
No 117
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=36.79 E-value=1.1e+02 Score=32.29 Aligned_cols=109 Identities=17% Similarity=0.210 Sum_probs=72.2
Q ss_pred ccCCcHHHHHHHHHcCCC------CccceEecCHHHHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEE
Q 005135 169 KCNQDRFVVEDIVKFGSQ------FRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIV 242 (712)
Q Consensus 169 KaN~~~~Vl~~l~~~G~~------~~~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~Iv 242 (712)
-+-+++..+|.++..|-. .+.+.+..|.--...|++.. +..-++-.+.-+...|+.+|..+..++ ++.-
T Consensus 23 ~~l~~p~~~Ei~A~aGfDwl~iD~EHapnd~~sl~~qL~a~~~~----~~~pvVR~p~g~~~~Ikq~LD~GAqtl-liPm 97 (255)
T COG3836 23 LSLPDPYMAEILATAGFDWLLIDGEHAPNDLQSLLHQLQAVAAY----ASPPVVRPPVGDPVMIKQLLDIGAQTL-LIPM 97 (255)
T ss_pred ecCCcHHHHHHHHhcCCCEEEecccccCccHHHHHHHHHHhhcc----CCCCeeeCCCCCHHHHHHHHcccccee-eeec
Confidence 345677889999988842 34456666666555555543 223355667778889999998544443 2457
Q ss_pred ECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHH
Q 005135 243 LEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQI 296 (712)
Q Consensus 243 VDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~ 296 (712)
|+|.+|.+.+.+..+ .|..|+|= |.+..+.-|+|| ...+.
T Consensus 98 V~s~eqAr~~V~A~r----YPP~G~Rg---------vg~~~arAsr~~-~i~dy 137 (255)
T COG3836 98 VDTAEQARQAVAATR----YPPLGERG---------VGSALARASRFG-RIADY 137 (255)
T ss_pred cCCHHHHHHHHHhcc----CCCCCccc---------cchhhhhhhhcC-CHHHH
Confidence 999999999877654 47788882 334556778999 54443
No 118
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=35.92 E-value=7.7e+02 Score=28.79 Aligned_cols=143 Identities=15% Similarity=0.099 Sum_probs=73.8
Q ss_pred ceeeeeeccCCcHHHHHHHHHcCCCCc-cceEecCHHHHHHHHHhcCCCCCCcEEEeCCC----------CCHHH-HH--
Q 005135 162 YQGVFPVKCNQDRFVVEDIVKFGSQFR-FGLEAGSKPELLLAMSCLCKGSPEALLVCNGF----------KDAGY-IT-- 227 (712)
Q Consensus 162 ~~~~YavKaN~~~~Vl~~l~~~G~~~~-~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng~----------K~~e~-I~-- 227 (712)
+.+-||.-.......++.|.+....-. +++--+....+..+++++.+....+|-+..+. |+.++ ++
T Consensus 40 IEvG~p~~s~~d~e~v~~i~~~~~~~~i~al~r~~~~did~a~~al~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~ 119 (494)
T TIGR00973 40 IEAGFPVSSPGDFEAVQRIARTVKNPRVCGLARCVEKDIDAAAEALKPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERA 119 (494)
T ss_pred EEEECCCCCHHHHHHHHHHHHhCCCCEEEEEcCCCHHhHHHHHHhccccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHH
Confidence 445566544445556666655442111 22322357778888877521122344333332 23332 22
Q ss_pred -HHHH-hccCCCcEEEEEC-----CHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHH
Q 005135 228 -LALL-ARKLDLNVVIVLE-----QEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVV 300 (712)
Q Consensus 228 -~Al~-~~~~G~~v~IvVD-----s~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l 300 (712)
.++. ++..|..+.+..+ +++.+..+.+.+.+.|.. ||++. +|-| .+++.++.+++
T Consensus 120 ~~~v~~a~~~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~Ga~-----~i~l~--------DTvG-----~~~P~~~~~~i 181 (494)
T TIGR00973 120 VGMVKYAKNFTDDVEFSCEDAGRTEIPFLARIVEAAINAGAT-----TINIP--------DTVG-----YALPAEYGNLI 181 (494)
T ss_pred HHHHHHHHHcCCeEEEEcCCCCCCCHHHHHHHHHHHHHcCCC-----EEEeC--------CCCC-----CCCHHHHHHHH
Confidence 1222 3445666666666 234555555555555432 45543 2222 46788999999
Q ss_pred HHHHHc-CCC-CceeEEEEecCCC
Q 005135 301 KKLEVA-EML-DCFQLLHFHIGSQ 322 (712)
Q Consensus 301 ~~l~~~-~~L-~~l~GLHfHiGSq 322 (712)
+.+++. +.. +...++|+|--..
T Consensus 182 ~~l~~~~~~~~~v~l~~H~HND~G 205 (494)
T TIGR00973 182 KGLRENVPNIDKAILSVHCHNDLG 205 (494)
T ss_pred HHHHHhhccccCceEEEEeCCCCC
Confidence 988764 321 1246999997655
No 119
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=35.89 E-value=1.2e+02 Score=31.50 Aligned_cols=62 Identities=19% Similarity=0.162 Sum_probs=43.1
Q ss_pred cCHHHHHHHHHhcCCCCCCcEEE---eCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHh
Q 005135 194 GSKPELLLAMSCLCKGSPEALLV---CNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKK 258 (712)
Q Consensus 194 aS~~EL~~Al~~G~~~~p~~II~---~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~ 258 (712)
..-+|+.-||++|. + .++|+ +++.-....|.+|..+++-|=+.+-++...+++....+...+
T Consensus 27 p~~aEfISAlAAG~--n-AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~ 91 (218)
T PF07279_consen 27 PGVAEFISALAAGW--N-AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGE 91 (218)
T ss_pred CCHHHHHHHHhccc--c-ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhh
Confidence 34679999999994 3 45655 455555667899988888776766677777776655544433
No 120
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=35.26 E-value=6e+02 Score=27.35 Aligned_cols=141 Identities=15% Similarity=0.103 Sum_probs=74.5
Q ss_pred eccCCcHHHHHHHHHcCCCCccceEec-------C-----HHHHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhccC
Q 005135 168 VKCNQDRFVVEDIVKFGSQFRFGLEAG-------S-----KPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKL 235 (712)
Q Consensus 168 vKaN~~~~Vl~~l~~~G~~~~~GlEva-------S-----~~EL~~Al~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~ 235 (712)
+-..+...+++.|.+.|. --+||+ . ..|....+.. .+..++....+ ..+.++.|+++
T Consensus 23 ~s~e~k~~ia~~L~~~Gv---~~IEvgsf~~p~~~p~~~d~~e~~~~l~~---~~~~~~~~l~~--~~~~ie~A~~~--- 91 (287)
T PRK05692 23 IPTADKIALIDRLSAAGL---SYIEVASFVSPKWVPQMADAAEVMAGIQR---RPGVTYAALTP--NLKGLEAALAA--- 91 (287)
T ss_pred cCHHHHHHHHHHHHHcCC---CEEEeCCCcCcccccccccHHHHHHhhhc---cCCCeEEEEec--CHHHHHHHHHc---
Confidence 344445678888888886 357776 1 1233333322 12223322222 56789999874
Q ss_pred CCcEEEEECC-----------------HHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHH
Q 005135 236 DLNVVIVLEQ-----------------EEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILR 298 (712)
Q Consensus 236 G~~v~IvVDs-----------------~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~ 298 (712)
|+..+-.+.+ ++++..+.+.+++.|......|=.... ....++ .+++.+.+
T Consensus 92 g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~----------~~~~~~--~~~~~~~~ 159 (287)
T PRK05692 92 GADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLG----------CPYEGE--VPPEAVAD 159 (287)
T ss_pred CCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEec----------CCCCCC--CCHHHHHH
Confidence 4443333323 345666777777766543222221111 001111 46788999
Q ss_pred HHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHH
Q 005135 299 VVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGE 335 (712)
Q Consensus 299 ~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~ 335 (712)
+++.+.+.|. + ...|-=..| +.++..+.+-++.
T Consensus 160 ~~~~~~~~G~-d-~i~l~DT~G--~~~P~~v~~lv~~ 192 (287)
T PRK05692 160 VAERLFALGC-Y-EISLGDTIG--VGTPGQVRAVLEA 192 (287)
T ss_pred HHHHHHHcCC-c-EEEeccccC--ccCHHHHHHHHHH
Confidence 9999999885 4 223333344 5577655544443
No 121
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=34.60 E-value=96 Score=34.01 Aligned_cols=55 Identities=24% Similarity=0.245 Sum_probs=37.2
Q ss_pred HHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCC
Q 005135 252 VIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQ 322 (712)
Q Consensus 252 I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSq 322 (712)
|.++.+..|....|++|+++.. ..+-|++.++..++++.|++.+. + .||+|.|+.
T Consensus 206 I~aIR~avG~d~~v~vris~~~------------~~~~g~~~eea~~ia~~Le~~Gv-d---~iev~~g~~ 260 (338)
T cd04733 206 YDAIRAAVGPGFPVGIKLNSAD------------FQRGGFTEEDALEVVEALEEAGV-D---LVELSGGTY 260 (338)
T ss_pred HHHHHHHcCCCCeEEEEEcHHH------------cCCCCCCHHHHHHHHHHHHHcCC-C---EEEecCCCC
Confidence 3333334555568999997521 12337888999999999988773 5 588888864
No 122
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=34.16 E-value=3.4e+02 Score=29.61 Aligned_cols=51 Identities=16% Similarity=0.246 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHH
Q 005135 244 EQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEV 305 (712)
Q Consensus 244 Ds~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~ 305 (712)
|+.+++..+.+.+.+.|+.+-..-.+.+. +| ...|-++.++..++++.+++
T Consensus 242 d~~~~l~~l~~~l~~~gv~pyyl~~~~p~----------~g-~~~f~~~~~~~~~i~~~l~~ 292 (321)
T TIGR03822 242 DDPETLAALMRAFVECRIKPYYLHHLDLA----------PG-TAHFRVTIEEGQALVRALRG 292 (321)
T ss_pred CCHHHHHHHHHHHHhcCCeeEEEEecCCC----------CC-cccccCcHHHHHHHHHHHHH
Confidence 89999999999888887765444444331 11 35677888888888887765
No 123
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=34.10 E-value=5.8e+02 Score=26.81 Aligned_cols=89 Identities=16% Similarity=0.082 Sum_probs=51.2
Q ss_pred CHHHHHHHHHhccCCCcEEEEECCHH---HHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHH
Q 005135 222 DAGYITLALLARKLDLNVVIVLEQEE---EVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILR 298 (712)
Q Consensus 222 ~~e~I~~Al~~~~~G~~v~IvVDs~~---EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~ 298 (712)
..+.++.|+.+ |+..+-++.+.+ ++....+.+++.|.. +++++.. . +-.+++.+.+
T Consensus 87 ~~~~i~~a~~~---g~~~iri~~~~s~~~~~~~~i~~ak~~G~~----v~~~~~~---------~-----~~~~~~~~~~ 145 (263)
T cd07943 87 TVDDLKMAADL---GVDVVRVATHCTEADVSEQHIGAARKLGMD----VVGFLMM---------S-----HMASPEELAE 145 (263)
T ss_pred CHHHHHHHHHc---CCCEEEEEechhhHHHHHHHHHHHHHCCCe----EEEEEEe---------c-----cCCCHHHHHH
Confidence 46778888873 555444444554 455555666666643 4444321 1 1357789999
Q ss_pred HHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHH
Q 005135 299 VVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGE 335 (712)
Q Consensus 299 ~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~ 335 (712)
+++++.+.|. + ...|-=..| ...+..+.+-++.
T Consensus 146 ~~~~~~~~G~-d-~i~l~DT~G--~~~P~~v~~lv~~ 178 (263)
T cd07943 146 QAKLMESYGA-D-CVYVTDSAG--AMLPDDVRERVRA 178 (263)
T ss_pred HHHHHHHcCC-C-EEEEcCCCC--CcCHHHHHHHHHH
Confidence 9999998875 4 223332334 4577655444443
No 124
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=33.54 E-value=84 Score=32.94 Aligned_cols=56 Identities=27% Similarity=0.369 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHcCC-CCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCC--CcEEEEcC
Q 005135 294 TQILRVVKKLEVAEM-LDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGAN--MQVIDIGG 357 (712)
Q Consensus 294 ~e~~~~l~~l~~~~~-L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~--l~~IDIGG 357 (712)
....++++.+++.+. ++ -+||+.|+.....+++.++ +.+.++.++|.+ ++.+|+..
T Consensus 136 ~~~~~~v~~l~~~g~~iD-giGlQ~H~~~~~~~~~~~~-------~~l~~~~~~g~pi~iTE~dv~~ 194 (254)
T smart00633 136 QAIYELVKKLKAKGVPID-GIGLQSHLSLGSPNIAEIR-------AALDRFASLGLEIQITELDISG 194 (254)
T ss_pred HHHHHHHHHHHHCCCccc-eeeeeeeecCCCCCHHHHH-------HHHHHHHHcCCceEEEEeecCC
Confidence 467889999988877 78 7899999987555554433 334444555655 44566553
No 125
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=33.53 E-value=82 Score=33.70 Aligned_cols=92 Identities=12% Similarity=0.196 Sum_probs=58.6
Q ss_pred cCCcHHHHHHHHHcCCCCccceE----ecCHHHHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECC
Q 005135 170 CNQDRFVVEDIVKFGSQFRFGLE----AGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQ 245 (712)
Q Consensus 170 aN~~~~Vl~~l~~~G~~~~~GlE----vaS~~EL~~Al~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs 245 (712)
.-+++.+++.+...|-.| +-+| .-+..++...+.+-. ..+-..++--+..+...|..+|.++..|+ ++-.|+|
T Consensus 25 ~~~sp~~~E~~a~~GfD~-v~iD~EHg~~~~~~l~~~i~a~~-~~g~~~lVRvp~~~~~~i~r~LD~GA~GI-ivP~V~s 101 (267)
T PRK10128 25 SSTTSYMAEIAATSGYDW-LLIDGEHAPNTIQDLYHQLQAIA-PYASQPVIRPVEGSKPLIKQVLDIGAQTL-LIPMVDT 101 (267)
T ss_pred cCCCcHHHHHHHHcCCCE-EEEccccCCCCHHHHHHHHHHHH-hcCCCeEEECCCCCHHHHHHHhCCCCCee-EecCcCC
Confidence 456789999999988543 2222 134445442222210 01122355667778999999999776665 3568999
Q ss_pred HHHHHHHHHHHHhcCCCceEEEE
Q 005135 246 EEEVDLVIEISKKLNVRPVIGAR 268 (712)
Q Consensus 246 ~~EL~~I~~~a~~~g~~~~IgLR 268 (712)
.+|.+.+.+.++ -|..|.|
T Consensus 102 aeeA~~~V~a~r----YpP~G~R 120 (267)
T PRK10128 102 AEQARQVVSATR----YPPYGER 120 (267)
T ss_pred HHHHHHHHHhcC----CCCCCCC
Confidence 999999988775 2555655
No 126
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=32.55 E-value=2.8e+02 Score=30.59 Aligned_cols=50 Identities=12% Similarity=0.028 Sum_probs=32.7
Q ss_pred hcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCC
Q 005135 258 KLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGS 321 (712)
Q Consensus 258 ~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGS 321 (712)
..+.. .|++|+++... . ....+|.+.++..++++.|.+.+. + .||+-.|+
T Consensus 215 ~vg~d-~v~vRis~~~~-----~----~~~~~~~~~ee~~~~~~~l~~~g~-d---~i~vs~g~ 264 (338)
T cd02933 215 AIGAD-RVGIRLSPFGT-----F----NDMGDSDPEATFSYLAKELNKRGL-A---YLHLVEPR 264 (338)
T ss_pred HhCCC-ceEEEECcccc-----C----CCCCCCCCHHHHHHHHHHHHHcCC-c---EEEEecCC
Confidence 34544 49999986421 1 112358899999999999988873 5 46664443
No 127
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=32.04 E-value=2e+02 Score=27.65 Aligned_cols=53 Identities=15% Similarity=0.130 Sum_probs=33.1
Q ss_pred HHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcC
Q 005135 298 RVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGID 362 (712)
Q Consensus 298 ~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~ 362 (712)
++++.+++.+- + +.|++..+|+.. ..+.++.+.|++.|..-..+=+||++.++
T Consensus 43 ~~v~aa~~~~a-d-iVglS~l~~~~~----------~~~~~~~~~l~~~gl~~~~vivGG~~vi~ 95 (134)
T TIGR01501 43 EFIKAAIETKA-D-AILVSSLYGHGE----------IDCKGLRQKCDEAGLEGILLYVGGNLVVG 95 (134)
T ss_pred HHHHHHHHcCC-C-EEEEecccccCH----------HHHHHHHHHHHHCCCCCCEEEecCCcCcC
Confidence 34555556553 6 889998887642 22334555667777644457778877664
No 128
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=31.48 E-value=3.6e+02 Score=31.18 Aligned_cols=117 Identities=14% Similarity=0.179 Sum_probs=66.6
Q ss_pred cHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCc-----HHHHHHHHHcCCCCccceEecCHHHHHHHHHhcCC
Q 005135 134 LPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQD-----RFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCK 208 (712)
Q Consensus 134 d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~-----~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~G~~ 208 (712)
+.+.++.+++.+++. ........|..+ .-++++.+. ..+++.+.+. .+.-+.+|.-+..+++.|+++|.
T Consensus 103 ~~e~i~~r~~~~~~~-~~~rvG~~~~AD---~IaL~~~s~dp~~v~~~Vk~V~~~-~dvPLSIDT~dpevleaAleaga- 176 (450)
T PRK04165 103 DDEEIDARLKKINNF-QFERVGEILKLD---MVALRNASGDPEKFAKAVKKVAET-TDLPLILCSEDPAVLKAALEVVA- 176 (450)
T ss_pred ChHHHHHHHHHhhcc-hHhhhcccccCC---EEEEeCCCCCHHHHHHHHHHHHHh-cCCCEEEeCCCHHHHHHHHHhcC-
Confidence 356777777777432 111111112222 124565442 3566777663 12347899999999999999983
Q ss_pred CCCCcEEEeCCCCC--HHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCC
Q 005135 209 GSPEALLVCNGFKD--AGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNV 261 (712)
Q Consensus 209 ~~p~~II~~ng~K~--~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~ 261 (712)
+...+|.+ -.++ ++...+|. +.|+.+++.-++++.+..+.+.+.+.|+
T Consensus 177 -d~~plI~S-at~dN~~~m~~la~---~yg~pvVv~~~dl~~L~~lv~~~~~~GI 226 (450)
T PRK04165 177 -DRKPLLYA-ATKENYEEMAELAK---EYNCPLVVKAPNLEELKELVEKLQAAGI 226 (450)
T ss_pred -CCCceEEe-cCcchHHHHHHHHH---HcCCcEEEEchhHHHHHHHHHHHHHcCC
Confidence 32334543 3334 33334444 3566544433447788888888888877
No 129
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=31.40 E-value=5.1e+02 Score=26.90 Aligned_cols=97 Identities=7% Similarity=-0.028 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHcCCCCceeEEEEecCC---CC--CChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCCC
Q 005135 293 TTQILRVVKKLEVAEMLDCFQLLHFHIGS---QI--PSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSK 367 (712)
Q Consensus 293 ~~e~~~~l~~l~~~~~L~~l~GLHfHiGS---qi--~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s~ 367 (712)
..++.++-+.+++.|+ . +.+++.+.++ .+ .+....+++++.+.+.++...++|.+ .|-+..|.. .|..
T Consensus 46 ~~~~~~l~~~~~~~gl-~-v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lGa~--~i~~~~~~~-~~~~-- 118 (275)
T PRK09856 46 AGGIKQIKALAQTYQM-P-IIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDMAKEMNAG--YTLISAAHA-GYLT-- 118 (275)
T ss_pred chHHHHHHHHHHHcCC-e-EEEecCcccCcCccccCCCHHHHHHHHHHHHHHHHHHHHhCCC--EEEEcCCCC-CCCC--
Confidence 3456666667777775 5 6666542221 11 24445566677777777666677865 444444321 1211
Q ss_pred CCCCCCCcCCCHHHHHHHHHHHHHH---HHHhcCCCCCeEEecCc
Q 005135 368 SADSDLSVAYTLEEYASAVVQAIRY---VCDRKNVKHPVLCSESG 409 (712)
Q Consensus 368 ~~~~~~s~~ysleeya~~Iv~~l~~---~~~~~gv~~p~Li~EPG 409 (712)
+.++.-+.+++.+++ ++++.|+ +|.+||-
T Consensus 119 ----------~~~~~~~~~~~~l~~l~~~a~~~gv---~l~iE~~ 150 (275)
T PRK09856 119 ----------PPNVIWGRLAENLSELCEYAENIGM---DLILEPL 150 (275)
T ss_pred ----------CHHHHHHHHHHHHHHHHHHHHHcCC---EEEEecC
Confidence 223333444444444 4556676 8999973
No 130
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=31.37 E-value=2.4e+02 Score=31.58 Aligned_cols=51 Identities=24% Similarity=0.289 Sum_probs=35.0
Q ss_pred hcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCC
Q 005135 258 KLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQ 322 (712)
Q Consensus 258 ~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSq 322 (712)
..+....||+|+++..- ..+ -|.+.++..++++.|++.|.++ -||+--|+.
T Consensus 212 ~vg~~~~vg~Rls~~d~------~~~-----~g~~~~e~~~la~~L~~~G~~d---~i~vs~~~~ 262 (363)
T COG1902 212 AVGADFPVGVRLSPDDF------FDG-----GGLTIEEAVELAKALEEAGLVD---YIHVSEGGY 262 (363)
T ss_pred HhCCCceEEEEECcccc------CCC-----CCCCHHHHHHHHHHHHhcCCcc---EEEeecccc
Confidence 44555569999987432 011 1899999999999999998644 466655544
No 131
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=31.34 E-value=70 Score=38.85 Aligned_cols=9 Identities=11% Similarity=-0.086 Sum_probs=5.2
Q ss_pred CHHHHHHHH
Q 005135 222 DAGYITLAL 230 (712)
Q Consensus 222 ~~e~I~~Al 230 (712)
+-++|+.++
T Consensus 714 pyeeik~~I 722 (1102)
T KOG1924|consen 714 PYEEIKNVI 722 (1102)
T ss_pred CHHHHHHHH
Confidence 455666655
No 132
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=30.73 E-value=7.2e+02 Score=26.89 Aligned_cols=132 Identities=17% Similarity=0.142 Sum_probs=74.7
Q ss_pred HHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHH
Q 005135 223 AGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKK 302 (712)
Q Consensus 223 ~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~ 302 (712)
.+-|+.|.+ .+.++. -+++-+.+.+.-+++.|++.+. .|-|-+.+.. .+| ...+.+...++.
T Consensus 7 k~iL~~A~~-~~yaV~-AfNv~n~e~~~avi~AAee~~s--PvIlq~~~~~-------------~~~-~g~~~~~~~~~~ 68 (284)
T PRK12857 7 AELLKKAEK-GGYAVG-AFNCNNMEIVQAIVAAAEAEKS--PVIIQASQGA-------------IKY-AGIEYISAMVRT 68 (284)
T ss_pred HHHHHHHHH-cCCeEE-EEEeCCHHHHHHHHHHHHHhCC--CEEEEechhH-------------hhh-CCHHHHHHHHHH
Confidence 345555554 335554 6899999999999999998764 3444443211 122 223345554444
Q ss_pred HHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCCCCCCCCCCcCCCHHHH
Q 005135 303 LEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEEY 382 (712)
Q Consensus 303 l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s~~~~~~~s~~ysleey 382 (712)
+.+.-.+ -+.||.--|. +.+.++++++ .|+. .|.||+|. ++++|=
T Consensus 69 ~A~~~~V--PValHLDH~~---~~e~i~~ai~-----------~Gft----------SVM~DgS~---------lp~eeN 113 (284)
T PRK12857 69 AAEKASV--PVALHLDHGT---DFEQVMKCIR-----------NGFT----------SVMIDGSK---------LPLEEN 113 (284)
T ss_pred HHHHCCC--CEEEECCCCC---CHHHHHHHHH-----------cCCC----------eEEEeCCC---------CCHHHH
Confidence 4332223 3466654442 5554333333 2443 34455542 567776
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEecCcch
Q 005135 383 ASAVVQAIRYVCDRKNVKHPVLCSESGRA 411 (712)
Q Consensus 383 a~~Iv~~l~~~~~~~gv~~p~Li~EPGRa 411 (712)
.+...+. -+++...|+ .+-.|.|+-
T Consensus 114 i~~T~~v-v~~Ah~~gv---sVEaElG~v 138 (284)
T PRK12857 114 IALTKKV-VEIAHAVGV---SVEAELGKI 138 (284)
T ss_pred HHHHHHH-HHHHHHcCC---EEEEEeeec
Confidence 6655444 456777787 799999983
No 133
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=30.70 E-value=3.7e+02 Score=30.74 Aligned_cols=121 Identities=17% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCCCCcEEEeCCC------------CCHHHHHHHHHhccCCCcEEEEECCHHH--------HHHHHHH
Q 005135 196 KPELLLAMSCLCKGSPEALLVCNGF------------KDAGYITLALLARKLDLNVVIVLEQEEE--------VDLVIEI 255 (712)
Q Consensus 196 ~~EL~~Al~~G~~~~p~~II~~ng~------------K~~e~I~~Al~~~~~G~~v~IvVDs~~E--------L~~I~~~ 255 (712)
..||.+|..+|. ..++++.|. .-.+.|..++. ...++.|.+|+... ++.+.++
T Consensus 221 ~~eL~rA~~LGa----~~VV~HPGs~~~~~~~ee~i~~i~e~L~~~la---~~~gV~IlLENmag~g~~lG~~~eeL~~I 293 (413)
T PTZ00372 221 LDDLQRCEQLGI----KLYNFHPGSTVGQCSKEEGIKNIADCINKAHE---ETKSVIIVLENTAGQKNSVGSKFEDLRDI 293 (413)
T ss_pred HHHHHHHHHcCC----CEEEECCCcCCCCCCHHHHHHHHHHHHHHHHh---CcCCCEEEEecCCCCCCcccCCHHHHHHH
Q ss_pred HHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCC--CCHHHHHHHHHHHHHcCCCCceeEEEEe---------------
Q 005135 256 SKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFG--LTTTQILRVVKKLEVAEMLDCFQLLHFH--------------- 318 (712)
Q Consensus 256 a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFG--l~~~e~~~~l~~l~~~~~L~~l~GLHfH--------------- 318 (712)
....+-..+||+=+ +|++....=. -+.+.+.++++.+.+.-.++.|..+|+|
T Consensus 294 id~v~~~~rlGvCL-----------DTcHafaAGydl~t~e~~~~~l~~f~~~iGl~rL~~vHLNDSk~~~GS~~DRH~~ 362 (413)
T PTZ00372 294 IALVEDKSRVGVCL-----------DTCHLFAAGYDIRTKESFDKVMKEFDEIVGLKYLKAVHLNDSKSDLGSGLDRHEN 362 (413)
T ss_pred HHhcCCcCCeEEEE-----------EHHHHHhcCCCCCcHHHHHHHHHHHHHhcChhheeEEEEEcCCCccCCCcccccC
Q ss_pred cCCCCCChHHHHHHHH
Q 005135 319 IGSQIPSTALLTDGVG 334 (712)
Q Consensus 319 iGSqi~d~~~~~~ai~ 334 (712)
+|...-+.+.|+..++
T Consensus 363 IG~G~Ig~~~f~~l~~ 378 (413)
T PTZ00372 363 IGKGKLGMETFKFIMN 378 (413)
T ss_pred cCCCCcChHHHHHHHh
No 134
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=29.80 E-value=8.4e+02 Score=27.39 Aligned_cols=149 Identities=14% Similarity=0.064 Sum_probs=75.4
Q ss_pred HHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCC----C---CCHHHHH
Q 005135 225 YITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKF----G---LTTTQIL 297 (712)
Q Consensus 225 ~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKF----G---l~~~e~~ 297 (712)
.|+.|.+ ...++. -+|+-+++.+.-+++.|.+.+. .|.|-+.+... ++ .++..-+. | +....+.
T Consensus 18 lL~~A~~-~~yAVg-AfNv~n~e~~~Avi~AAEe~~s--PvIlq~s~~~~---~~--~~g~~~~~~~~~~~~~~~~~~~~ 88 (357)
T TIGR01520 18 LFQYAKE-NNFAIP-AINCTSSSTINAALEAAADVKS--PIIIQFSNGGA---AF--IAGKGVKDEVPQGASILGAIAGA 88 (357)
T ss_pred HHHHHHH-CCceEE-EEEeCCHHHHHHHHHHHHHhCC--CEEEEcCcchh---hh--cCCcccccccchhhhhhhHHHHH
Confidence 3444433 224444 6899999999999999998764 34455533210 00 01000000 0 0112244
Q ss_pred HHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcC--CC-CcCcCCCCCCCCCCC
Q 005135 298 RVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGG--GL-GIDYDGSKSADSDLS 374 (712)
Q Consensus 298 ~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGG--Gl-gv~Y~~s~~~~~~~s 374 (712)
..++.+.+.-.+ -+.||.--|... +.+.+.++++... .++.-+| || .|.+|+|.
T Consensus 89 ~~v~~~Ae~a~V--PValHLDHg~~~-~~~~i~~ai~ag~-------------~~~~~~g~~gftSVMiDgS~------- 145 (357)
T TIGR01520 89 HHVHSIAEHYGV--PVVLHTDHCAKK-LLPWVDGLLEAGE-------------KYFSAHGKPLFSSHMIDLSE------- 145 (357)
T ss_pred HHHHHHHHHCCC--CEEEECCCCCCc-chHHHHHHHHhhh-------------hhhhhcCCCCCceEEeeCCC-------
Confidence 555555443333 346776555421 1132333333221 1122233 34 34555542
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCcch
Q 005135 375 VAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRA 411 (712)
Q Consensus 375 ~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPGRa 411 (712)
++++|=.+..++.+ ++|...|+ .+-.|.|+-
T Consensus 146 --lpfeENI~~TrevV-e~Ah~~Gv---sVEaELG~v 176 (357)
T TIGR01520 146 --EPIEENIEICVKYL-KRMAKIKM---WLEIEIGIT 176 (357)
T ss_pred --CCHHHHHHHHHHHH-HHHHHcCC---EEEEEeccc
Confidence 57887766655544 46777887 799999974
No 135
>PF12224 Amidoligase_2: Putative amidoligase enzyme; InterPro: IPR022025 This family of proteins are likely to act as amidoligase enzymes [] Protein in this family are found in conserved gene neighbourhoods encoding a glutamine amidotransferase-like thiol peptidase (in proteobacteria) or an Aig2 family cyclotransferase protein (in firmicutes) [].
Probab=29.63 E-value=2e+02 Score=29.77 Aligned_cols=54 Identities=22% Similarity=0.155 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHcCCC--CceeEEEEecCCCCCC--hHHHHHHHHHHHHHHHHHHHc
Q 005135 293 TTQILRVVKKLEVAEML--DCFQLLHFHIGSQIPS--TALLTDGVGEAAQIYCELVRL 346 (712)
Q Consensus 293 ~~e~~~~l~~l~~~~~L--~~l~GLHfHiGSqi~d--~~~~~~ai~~~~~~~~~L~~~ 346 (712)
.+++.++++.|++.+.+ +.-.|+|+|+|-+..+ ...+++.++-+.-+-..|.++
T Consensus 91 ~~~i~~~~~~lr~~~~~~~~~scg~HVHv~~~~~~~~~~~l~~l~~~~~~~E~~l~~~ 148 (252)
T PF12224_consen 91 LEEIDKVLEALRRNGAIGTNDSCGFHVHVGPEPPSFSLETLKRLAKAFWLFEPWLRRL 148 (252)
T ss_pred HHHHHHHHHHHHHcCCccccCCeeEEEEECCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888876543 2236999999976555 665555444444444444443
No 136
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=29.58 E-value=4.1e+02 Score=28.38 Aligned_cols=88 Identities=22% Similarity=0.217 Sum_probs=51.2
Q ss_pred ceeeeeeccCCcHHHHHHHHHcCCCCccceE--ecCHHHHHHHHHhcCCCCCCcEEEeCCCCC-HHHHHHHHHhccCCCc
Q 005135 162 YQGVFPVKCNQDRFVVEDIVKFGSQFRFGLE--AGSKPELLLAMSCLCKGSPEALLVCNGFKD-AGYITLALLARKLDLN 238 (712)
Q Consensus 162 ~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlE--vaS~~EL~~Al~~G~~~~p~~II~~ng~K~-~e~I~~Al~~~~~G~~ 238 (712)
+.++..+-.|..+ ++.+.+.- |+. ..|..|+. +.. +.+-++++.|... .+....|++ .|..
T Consensus 30 ~~~vav~d~~~~~--a~~~a~~~-----~~~~~~~~~~~ll---~~~---~iD~V~Iatp~~~H~e~~~~AL~---aGkh 93 (342)
T COG0673 30 LELVAVVDRDPER--AEAFAEEF-----GIAKAYTDLEELL---ADP---DIDAVYIATPNALHAELALAALE---AGKH 93 (342)
T ss_pred eEEEEEecCCHHH--HHHHHHHc-----CCCcccCCHHHHh---cCC---CCCEEEEcCCChhhHHHHHHHHh---cCCE
Confidence 3555444455433 55554432 333 44555554 332 3477888888544 445555655 4544
Q ss_pred EEEEEC-----CHHHHHHHHHHHHhcCCCceEEE
Q 005135 239 VVIVLE-----QEEEVDLVIEISKKLNVRPVIGA 267 (712)
Q Consensus 239 v~IvVD-----s~~EL~~I~~~a~~~g~~~~IgL 267 (712)
+-+| +++|.+.|.+++++.|+...|+.
T Consensus 94 --Vl~EKPla~t~~ea~~l~~~a~~~~~~l~v~~ 125 (342)
T COG0673 94 --VLCEKPLALTLEEAEELVELARKAGVKLMVGF 125 (342)
T ss_pred --EEEcCCCCCCHHHHHHHHHHHHHcCCceeeeh
Confidence 4454 68999999999998766554443
No 137
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=29.51 E-value=9.4e+02 Score=27.86 Aligned_cols=84 Identities=14% Similarity=0.120 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCC-CCcCcCCCCCC
Q 005135 291 LTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGG-LGIDYDGSKSA 369 (712)
Q Consensus 291 l~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGG-lgv~Y~~s~~~ 369 (712)
++.+.+.++++.+++.+. . +...|- + +..+.++...+.+.|+.=-+||-|.| |+
T Consensus 185 at~dN~~~m~~la~~yg~-p-vVv~~~-------d-------l~~L~~lv~~~~~~GI~dIILDPg~ggf~--------- 239 (450)
T PRK04165 185 ATKENYEEMAELAKEYNC-P-LVVKAP-------N-------LEELKELVEKLQAAGIKDLVLDPGTENIK--------- 239 (450)
T ss_pred cCcchHHHHHHHHHHcCC-c-EEEEch-------h-------HHHHHHHHHHHHHcCCCcEEECCCCchhh---------
Confidence 333455666676777765 3 544332 1 44555666667788885457888775 43
Q ss_pred CCCCCcCCCHHHHHHHHHH-HHHHHHHhcCCCCCeEEecCcc
Q 005135 370 DSDLSVAYTLEEYASAVVQ-AIRYVCDRKNVKHPVLCSESGR 410 (712)
Q Consensus 370 ~~~~s~~ysleeya~~Iv~-~l~~~~~~~gv~~p~Li~EPGR 410 (712)
++++.|. .++. +|++-++..|. |. ++=++|
T Consensus 240 -------ksl~~~~-~iRr~Al~~~~~~lgy--Pi-l~~~s~ 270 (450)
T PRK04165 240 -------ETLDDFV-QIRRAAIKKGDRPLGY--PI-IAFPIE 270 (450)
T ss_pred -------hhHHHHH-HHHhhhhhcccccCCC--CE-EEcchh
Confidence 4566654 3333 35444555555 44 444555
No 138
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=29.41 E-value=7.1e+02 Score=26.45 Aligned_cols=92 Identities=13% Similarity=0.086 Sum_probs=51.1
Q ss_pred CHHHHHHHHHhccCCCcEEEEEC---CHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHH
Q 005135 222 DAGYITLALLARKLDLNVVIVLE---QEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILR 298 (712)
Q Consensus 222 ~~e~I~~Al~~~~~G~~v~IvVD---s~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~ 298 (712)
.+++++.+.. .|+..+-++. +++.+....+.+++.|.. +++.+....+ ...+++.+.+
T Consensus 93 ~~~di~~~~~---~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~----v~~~i~~~~~------------~~~~~~~~~~ 153 (275)
T cd07937 93 VELFVEKAAK---NGIDIFRIFDALNDVRNLEVAIKAVKKAGKH----VEGAICYTGS------------PVHTLEYYVK 153 (275)
T ss_pred HHHHHHHHHH---cCCCEEEEeecCChHHHHHHHHHHHHHCCCe----EEEEEEecCC------------CCCCHHHHHH
Confidence 4567888776 3454433444 445555555666666643 2333321100 1347788999
Q ss_pred HHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHH
Q 005135 299 VVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEA 336 (712)
Q Consensus 299 ~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~ 336 (712)
+++++.+.|. + ...|.=..| +..+..+.+-++.+
T Consensus 154 ~~~~~~~~Ga-~-~i~l~DT~G--~~~P~~v~~lv~~l 187 (275)
T cd07937 154 LAKELEDMGA-D-SICIKDMAG--LLTPYAAYELVKAL 187 (275)
T ss_pred HHHHHHHcCC-C-EEEEcCCCC--CCCHHHHHHHHHHH
Confidence 9999999885 4 233433344 55777555444443
No 139
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=29.24 E-value=1.6e+02 Score=32.13 Aligned_cols=51 Identities=14% Similarity=0.097 Sum_probs=35.0
Q ss_pred HHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCC
Q 005135 255 ISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGS 321 (712)
Q Consensus 255 ~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGS 321 (712)
+.+..|....|++|+++.. ..+-|.+.+++.++++.+.+.+. + -||+|.|.
T Consensus 214 IR~~vG~d~~v~vri~~~~------------~~~~g~~~~e~~~ia~~Le~~gv-d---~iev~~g~ 264 (336)
T cd02932 214 VRAVWPEDKPLFVRISATD------------WVEGGWDLEDSVELAKALKELGV-D---LIDVSSGG 264 (336)
T ss_pred HHHHcCCCceEEEEEcccc------------cCCCCCCHHHHHHHHHHHHHcCC-C---EEEECCCC
Confidence 3334555668999998631 11237788999999999988763 5 57888775
No 140
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=29.15 E-value=2.8e+02 Score=27.33 Aligned_cols=90 Identities=12% Similarity=0.155 Sum_probs=43.2
Q ss_pred EEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHH
Q 005135 215 LVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTT 294 (712)
Q Consensus 215 I~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~ 294 (712)
+|-.+.-+...+...- ++|++.+|++-..+.-+...+.+++.|++ -+.+++.... ...-.++.+
T Consensus 14 vYRS~~P~~~n~~fL~---~L~LKTII~L~~e~~~~~~~~f~~~~~I~-l~~~~~~~~~------------~~~~~~~~~ 77 (164)
T PF03162_consen 14 VYRSAQPTPANFPFLE---RLGLKTIINLRPEPPSQDFLEFAEENGIK-LIHIPMSSSK------------DPWVPISEE 77 (164)
T ss_dssp EEEESS--HHHHHHHH---HHT-SEEEE--SS---HHHHHHHHHTT-E-EEE-------------------GGG----HH
T ss_pred ccCCCCCChhhHHHHH---HCCCceEEEecCCCCCHHHHHHHhhcCce-EEEecccccc------------CccccCCHH
Confidence 5555666666666532 37899888887775445555566666543 3333332110 012246677
Q ss_pred HHHHHHHHHHHcCCCCceeEEEEecCCC
Q 005135 295 QILRVVKKLEVAEMLDCFQLLHFHIGSQ 322 (712)
Q Consensus 295 e~~~~l~~l~~~~~L~~l~GLHfHiGSq 322 (712)
++.++++.+.+..+- -..+||+-|+.
T Consensus 78 ~v~~aL~~ild~~n~--PvLiHC~~G~~ 103 (164)
T PF03162_consen 78 QVAEALEIILDPRNY--PVLIHCNHGKD 103 (164)
T ss_dssp HHHHHHHHHH-GGG---SEEEE-SSSSS
T ss_pred HHHHHHHHHhCCCCC--CEEEEeCCCCc
Confidence 888888877665443 45899999986
No 141
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=29.08 E-value=7.7e+02 Score=26.72 Aligned_cols=132 Identities=14% Similarity=0.192 Sum_probs=76.0
Q ss_pred HHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHH
Q 005135 223 AGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKK 302 (712)
Q Consensus 223 ~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~ 302 (712)
.+.|+.|.+ ...++. -+++-+++-+.-+++.|++.+.+ |-|-+.+. .-+| +..+.+..+++.
T Consensus 7 k~iL~~A~~-~~yAV~-AfN~~n~e~~~avi~AAee~~sP--vIlq~s~~-------------~~~~-~~~~~~~~~~~~ 68 (286)
T PRK12738 7 KYLLQDAQA-NGYAVP-AFNIHNAETIQAILEVCSEMRSP--VILAGTPG-------------TFKH-IALEEIYALCSA 68 (286)
T ss_pred HHHHHHHHH-CCceEE-EEEeCCHHHHHHHHHHHHHHCCC--EEEEcCcc-------------hhhh-CCHHHHHHHHHH
Confidence 455666654 334554 68999999999999999988653 33433221 1122 234455555555
Q ss_pred HHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCCCCCCCCCCcCCCHHHH
Q 005135 303 LEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEEY 382 (712)
Q Consensus 303 l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s~~~~~~~s~~ysleey 382 (712)
+.+.-.+. +.||.--|. +.+.+++++ +.|+. .|.+|+|. ++++|=
T Consensus 69 ~a~~~~VP--ValHLDHg~---~~e~i~~ai-----------~~GFt----------SVM~DgS~---------lp~eeN 113 (286)
T PRK12738 69 YSTTYNMP--LALHLDHHE---SLDDIRRKV-----------HAGVR----------SAMIDGSH---------FPFAEN 113 (286)
T ss_pred HHHHCCCC--EEEECCCCC---CHHHHHHHH-----------HcCCC----------eEeecCCC---------CCHHHH
Confidence 54433333 467764443 444333322 23543 34555542 567776
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEecCcch
Q 005135 383 ASAVVQAIRYVCDRKNVKHPVLCSESGRA 411 (712)
Q Consensus 383 a~~Iv~~l~~~~~~~gv~~p~Li~EPGRa 411 (712)
.+...+ +-++|...|+ .+-.|.|+-
T Consensus 114 i~~T~e-vv~~Ah~~gv---~VEaElG~i 138 (286)
T PRK12738 114 VKLVKS-VVDFCHSQDC---SVEAELGRL 138 (286)
T ss_pred HHHHHH-HHHHHHHcCC---eEEEEEEee
Confidence 665444 4457777787 688998884
No 142
>KOG2875 consensus 8-oxoguanine DNA glycosylase [Replication, recombination and repair]
Probab=28.95 E-value=44 Score=35.87 Aligned_cols=80 Identities=26% Similarity=0.400 Sum_probs=48.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcC
Q 005135 285 EKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYD 364 (712)
Q Consensus 285 ~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~ 364 (712)
..+.||--.. +-++.|++.+. +|| +.| +-|+..|+..+...++..+. ..|..+-.|| |++|.
T Consensus 98 ~D~~F~~la~---qgvRlLrQdP~-E~l--fSF-iCSSNNNIaRIT~Mve~fc~------~fG~~i~~~d-----g~~~h 159 (323)
T KOG2875|consen 98 VDDHFQELAQ---QGVRLLRQDPI-ECL--FSF-ICSSNNNIARITGMVERFCQ------AFGPRIIQLD-----GVDYH 159 (323)
T ss_pred CChHHHHHHH---hhhHHHhcCcH-HHH--HHH-HhcCCCcHHHHHHHHHHHHH------hhCcceEeec-----Ccccc
Confidence 3566763322 44566666664 543 554 77778888876655554433 3476666666 78886
Q ss_pred CCCCCCCCCCcCCCHHHHH-HHHHHHHHH
Q 005135 365 GSKSADSDLSVAYTLEEYA-SAVVQAIRY 392 (712)
Q Consensus 365 ~s~~~~~~~s~~ysleeya-~~Iv~~l~~ 392 (712)
+- +++++++ .++...+++
T Consensus 160 ~F----------Psl~~L~g~~~Ea~LR~ 178 (323)
T KOG2875|consen 160 GF----------PSLQALAGPEVEAELRK 178 (323)
T ss_pred cC----------ccHHHhcCcHhHHHHHH
Confidence 52 6899888 445444543
No 143
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=28.56 E-value=7e+02 Score=26.05 Aligned_cols=96 Identities=18% Similarity=0.150 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHHcCCCCceeEEEEe--cCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCCCCC
Q 005135 292 TTTQILRVVKKLEVAEMLDCFQLLHFH--IGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSA 369 (712)
Q Consensus 292 ~~~e~~~~l~~l~~~~~L~~l~GLHfH--iGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s~~~ 369 (712)
+.+++.++.+.+++.+.+. + .+|.. .+.-..+.+...++++.+.+.++...++|.+ ++.+-.|.. ..
T Consensus 43 ~~~~~~~l~~~~~~~~~~~-i-~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~A~~lG~~--~v~~~~g~~---~~---- 111 (279)
T cd00019 43 KKERAEKFKAIAEEGPSIC-L-SVHAPYLINLASPDKEKREKSIERLKDEIERCEELGIR--LLVFHPGSY---LG---- 111 (279)
T ss_pred CHHHHHHHHHHHHHcCCCc-E-EEEcCceeccCCCCHHHHHHHHHHHHHHHHHHHHcCCC--EEEECCCCC---CC----
Confidence 5677777777787774433 2 33321 1122235557778888888888877888876 455544321 10
Q ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHH---hcCCCCCeEEecC
Q 005135 370 DSDLSVAYTLEEYASAVVQAIRYVCD---RKNVKHPVLCSES 408 (712)
Q Consensus 370 ~~~~s~~ysleeya~~Iv~~l~~~~~---~~gv~~p~Li~EP 408 (712)
.+.++..+.++..++++++ +.|+ +|.+|+
T Consensus 112 -------~~~~~~~~~~~~~l~~l~~~a~~~gi---~l~lEn 143 (279)
T cd00019 112 -------QSKEEGLKRVIEALNELIDKAETKGV---VIALET 143 (279)
T ss_pred -------CCHHHHHHHHHHHHHHHHHhccCCCC---EEEEeC
Confidence 1234444555556666554 4454 788887
No 144
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=28.27 E-value=7.1e+02 Score=26.07 Aligned_cols=105 Identities=20% Similarity=0.198 Sum_probs=59.0
Q ss_pred HHHHHHHHHhccCCC-cEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHH
Q 005135 223 AGYITLALLARKLDL-NVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVK 301 (712)
Q Consensus 223 ~e~I~~Al~~~~~G~-~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~ 301 (712)
.++++...++ |. -++|.+|+...+.++++..++.|...+.||=+||.+ +.+.+..++.
T Consensus 81 ~~~i~~~~~a---Gad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~T------------------p~~~i~~~l~ 139 (228)
T PRK08091 81 FEVAKACVAA---GADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPET------------------PISLLEPYLD 139 (228)
T ss_pred HHHHHHHHHh---CCCEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCCC------------------CHHHHHHHHh
Confidence 4566655543 32 246788877778788787888887668899998753 3445544444
Q ss_pred HHHHcCCCCceeEEEEecCC--CCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCC
Q 005135 302 KLEVAEMLDCFQLLHFHIGS--QIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGL 359 (712)
Q Consensus 302 ~l~~~~~L~~l~GLHfHiGS--qi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGl 359 (712)
. ++.+.-+....|- |-... ..+.+..++...+.+.|.+. .|-+=||.
T Consensus 140 ---~---vD~VLiMtV~PGfgGQ~f~~----~~l~KI~~lr~~~~~~~~~~-~IeVDGGI 188 (228)
T PRK08091 140 ---Q---IDLIQILTLDPRTGTKAPSD----LILDRVIQVENRLGNRRVEK-LISIDGSM 188 (228)
T ss_pred ---h---cCEEEEEEECCCCCCccccH----HHHHHHHHHHHHHHhcCCCc-eEEEECCC
Confidence 3 3324445556553 43322 34444444433333445442 25566665
No 145
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=27.95 E-value=7.3e+02 Score=26.10 Aligned_cols=142 Identities=11% Similarity=0.025 Sum_probs=69.5
Q ss_pred eccCCcHHHHHHHHHcCCCCccceEecC----HHHHHHHHHhcCCCCCCcEE-EeCCCCCHHHHHHHHHhcc-CCCcEEE
Q 005135 168 VKCNQDRFVVEDIVKFGSQFRFGLEAGS----KPELLLAMSCLCKGSPEALL-VCNGFKDAGYITLALLARK-LDLNVVI 241 (712)
Q Consensus 168 vKaN~~~~Vl~~l~~~G~~~~~GlEvaS----~~EL~~Al~~G~~~~p~~II-~~ng~K~~e~I~~Al~~~~-~G~~v~I 241 (712)
+.......+++.|.+.|.. -+||+| +.+.+.+...--..+..++. ++.+ ..+.++.|+++.+ .|+..+-
T Consensus 17 ~~~~~k~~i~~~L~~~Gv~---~iEvg~~~~~~~~~~~~~~l~~~~~~~~~~~l~r~--~~~~v~~a~~~~~~~~~~~i~ 91 (268)
T cd07940 17 LTPEEKLEIARQLDELGVD---VIEAGFPAASPGDFEAVKRIAREVLNAEICGLARA--VKKDIDAAAEALKPAKVDRIH 91 (268)
T ss_pred CCHHHHHHHHHHHHHcCCC---EEEEeCCCCCHHHHHHHHHHHHhCCCCEEEEEccC--CHhhHHHHHHhCCCCCCCEEE
Confidence 3444556777777777752 345543 33332222221001223332 2222 2455777766421 1144322
Q ss_pred EEC-----------------CHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHH
Q 005135 242 VLE-----------------QEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLE 304 (712)
Q Consensus 242 vVD-----------------s~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~ 304 (712)
++. +++.+....+.+++.|.. +++++.. .+ -.+++.+.++++++.
T Consensus 92 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~----v~~~~~~------------~~--~~~~~~~~~~~~~~~ 153 (268)
T cd07940 92 TFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLD----VEFSAED------------AT--RTDLDFLIEVVEAAI 153 (268)
T ss_pred EEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCe----EEEeeec------------CC--CCCHHHHHHHHHHHH
Confidence 332 345555666667766532 3343221 11 257888899999999
Q ss_pred HcCCCCceeEEEEecCCCCCChHHHHHHHHHH
Q 005135 305 VAEMLDCFQLLHFHIGSQIPSTALLTDGVGEA 336 (712)
Q Consensus 305 ~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~ 336 (712)
+.|. + -..|-=..| ...+..+.+.++.+
T Consensus 154 ~~G~-~-~i~l~DT~G--~~~P~~v~~lv~~l 181 (268)
T cd07940 154 EAGA-T-TINIPDTVG--YLTPEEFGELIKKL 181 (268)
T ss_pred HcCC-C-EEEECCCCC--CCCHHHHHHHHHHH
Confidence 8874 4 223333344 45776555444443
No 146
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=27.85 E-value=3.1e+02 Score=31.77 Aligned_cols=59 Identities=19% Similarity=0.200 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCCCCCCcEEEeCC--CCCHHH-HHHHHHhccCCCcE-EEEECCHHHHHHHHHHHHh
Q 005135 196 KPELLLAMSCLCKGSPEALLVCNG--FKDAGY-ITLALLARKLDLNV-VIVLEQEEEVDLVIEISKK 258 (712)
Q Consensus 196 ~~EL~~Al~~G~~~~p~~II~~ng--~K~~e~-I~~Al~~~~~G~~v-~IvVDs~~EL~~I~~~a~~ 258 (712)
..+++..+.. +|+.|++++| .-+.+. |+.|-.-.+.+.++ +|..-|.+--+.+.++..+
T Consensus 110 ~~~l~~I~~~----~PDIILLaGGtDGG~~e~~l~NA~~La~~~~~~pIIyAGN~~a~~~V~~il~~ 172 (463)
T TIGR01319 110 NKDIEAIEES----NLDIILFAGGTDGGEEECGIHNAKMLAEHGLDCAIIVAGNKDIQDEVQEIFDH 172 (463)
T ss_pred HHHHHHHhhc----CCCEEEEeCCcCCCchHHHHHHHHHHHhcCCCCcEEEeCCHHHHHHHHHHHhc
Confidence 4455554443 7888888887 345555 44443322344433 5656777766666666654
No 147
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=27.80 E-value=4.9e+02 Score=29.07 Aligned_cols=105 Identities=10% Similarity=0.176 Sum_probs=57.6
Q ss_pred cEEEEECC-HHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCc----cccCCCCCCCCCCHHHHHHHHHHHHHcCCCCce
Q 005135 238 NVVIVLEQ-EEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHF----GSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCF 312 (712)
Q Consensus 238 ~v~IvVDs-~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~----~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l 312 (712)
++++-||. .++++..++.++.+|.+. .|||+..+-+--.++ ..--+..+++|++++.+.++.+.|.+.+.-+ +
T Consensus 204 ~~ivlVD~~~d~~~~al~~a~~~g~~l-~gVRlDs~gdl~DK~~~~~~~~~~~~~~~G~~~~l~~~vr~~Ld~~g~~~-v 281 (352)
T PRK07188 204 ELIALVDYNNDVITDSLKVAREFGDKL-KGVRVDTSKNMIDKYFIRHPEVLGTFDPRGVNPELIKALRKALDENGGKH-V 281 (352)
T ss_pred CeEEEEecCcccHHHHHHHHHHhCCCc-cEEEeCCcchHhhhhcccccccccccccccccHHHHHHHHHHHhhCCCCC-c
Confidence 35566672 134444555566655433 489985320000000 0001236789999999999999998887534 3
Q ss_pred eEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCC
Q 005135 313 QLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGL 359 (712)
Q Consensus 313 ~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGl 359 (712)
+ |- . |.-.|.+. +.++.+.|++++..=||.=+
T Consensus 282 k-I~--a-SgGine~~-----------I~~~~~~g~piD~~GVGt~l 313 (352)
T PRK07188 282 K-II--V-SSGFDAKK-----------IREFEAQNVPVDIYGVGSSL 313 (352)
T ss_pred E-EE--E-eCCCCHHH-----------HHHHHHcCCCccEEecCccc
Confidence 2 22 2 33335442 23345678898877666544
No 148
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=27.75 E-value=1.6e+02 Score=27.24 Aligned_cols=84 Identities=17% Similarity=0.175 Sum_probs=41.0
Q ss_pred cEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHH------HHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCC
Q 005135 213 ALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEE------EVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEK 286 (712)
Q Consensus 213 ~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~------EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~ 286 (712)
.+.+ .|--+.++|+.+.. .|++.+|+.---. ..+.+.+.++++|... +-|-|. ++
T Consensus 8 ~~~v-s~Q~~~~d~~~la~---~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y-~~iPv~------------~~-- 68 (110)
T PF04273_consen 8 DLSV-SGQPSPEDLAQLAA---QGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQY-VHIPVD------------GG-- 68 (110)
T ss_dssp TEEE-ECS--HHHHHHHHH---CT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EE-EE----------------TT--
T ss_pred CeEE-CCCCCHHHHHHHHH---CCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeE-EEeecC------------CC--
Confidence 4444 34467788886554 7888778773221 2334556677776541 222221 11
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCC
Q 005135 287 GKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGS 321 (712)
Q Consensus 287 SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGS 321 (712)
+++.+++..+.+.+.+.+. -+.+||..|.
T Consensus 69 ---~~~~~~v~~f~~~l~~~~~---Pvl~hC~sG~ 97 (110)
T PF04273_consen 69 ---AITEEDVEAFADALESLPK---PVLAHCRSGT 97 (110)
T ss_dssp ---T--HHHHHHHHHHHHTTTT---SEEEE-SCSH
T ss_pred ---CCCHHHHHHHHHHHHhCCC---CEEEECCCCh
Confidence 4677888888777777664 3467766664
No 149
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=27.44 E-value=4.1e+02 Score=28.73 Aligned_cols=132 Identities=17% Similarity=0.140 Sum_probs=74.6
Q ss_pred HHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHH
Q 005135 223 AGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKK 302 (712)
Q Consensus 223 ~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~ 302 (712)
++.|+.|.+. ..++. -+|+-+++.+.-+++.|++.+. +|-|-+.+.. .+|. ..+.+...++.
T Consensus 6 ~~ll~~A~~~-~yAV~-AfN~~n~e~~~avi~AAe~~~s--PvIlq~~~~~-------------~~~~-~~~~~~~~~~~ 67 (287)
T PF01116_consen 6 KELLKKAKEG-GYAVP-AFNVYNLETARAVIEAAEELNS--PVILQISPSE-------------VKYM-GLEYLAAMVKA 67 (287)
T ss_dssp HHHHHHHHHH-T-BEE-EEE-SSHHHHHHHHHHHHHTTS---EEEEEEHHH-------------HHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCeEE-EEeeCCHHHHHHHHHHHHHhCC--CEEEEcchhh-------------hhhh-hHHHHHHHHHH
Confidence 4556666653 34554 6899999999999999998754 4455554421 1111 23455556666
Q ss_pred HHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCCCCCCCCCCcCCCHHHH
Q 005135 303 LEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEEY 382 (712)
Q Consensus 303 l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s~~~~~~~s~~ysleey 382 (712)
+.+.-.+ -+.||.--|. +.+.++++++. |+. .|.+|+|. .+++|=
T Consensus 68 ~a~~~~v--PValHLDH~~---~~e~i~~ai~~-----------Gft----------SVM~DgS~---------l~~eeN 112 (287)
T PF01116_consen 68 AAEEASV--PVALHLDHGK---DFEDIKRAIDA-----------GFT----------SVMIDGSA---------LPFEEN 112 (287)
T ss_dssp HHHHSTS--EEEEEEEEE----SHHHHHHHHHH-----------TSS----------EEEEE-TT---------S-HHHH
T ss_pred HHHHcCC--CEEeecccCC---CHHHHHHHHHh-----------Ccc----------cccccCCc---------CCHHHH
Confidence 5554344 4577775543 45444443333 443 33455542 567776
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEecCcch
Q 005135 383 ASAVVQAIRYVCDRKNVKHPVLCSESGRA 411 (712)
Q Consensus 383 a~~Iv~~l~~~~~~~gv~~p~Li~EPGRa 411 (712)
.+...+ +-++|...|+ .+-.|.|+-
T Consensus 113 i~~T~~-vv~~ah~~gv---~VEaElG~i 137 (287)
T PF01116_consen 113 IAITRE-VVEYAHAYGV---SVEAELGHI 137 (287)
T ss_dssp HHHHHH-HHHHHHHTT----EEEEEESBS
T ss_pred HHHHHH-HHHhhhhhCC---EEEEEeeee
Confidence 554444 4457888886 788898875
No 150
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=27.20 E-value=2.1e+02 Score=28.74 Aligned_cols=74 Identities=22% Similarity=0.139 Sum_probs=43.3
Q ss_pred cCHHHHHHHHHhcCCCCCCcEEEeCCCCCH-H---------------------------HHHHHHHhccCCCcEEEEECC
Q 005135 194 GSKPELLLAMSCLCKGSPEALLVCNGFKDA-G---------------------------YITLALLARKLDLNVVIVLEQ 245 (712)
Q Consensus 194 aS~~EL~~Al~~G~~~~p~~II~~ng~K~~-e---------------------------~I~~Al~~~~~G~~v~IvVDs 245 (712)
-+..||..|.+.+. +.--+|++|+.-.. + .+.++..++.+|.. .+.|++
T Consensus 89 m~~~eL~Ta~~~~l--pviivV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~-~~~v~~ 165 (202)
T cd02006 89 FMIEELAVGAQHRI--PYIHVLVNNAYLGLIRQAQRAFDMDYQVNLAFENINSSELGGYGVDHVKVAEGLGCK-AIRVTK 165 (202)
T ss_pred ccHHHHHHHHHhCC--CeEEEEEeCchHHHHHHHHHHhcCccccccccccccccccCCCCCCHHHHHHHCCCE-EEEECC
Confidence 45689999888873 43344566652111 0 02223333446765 588999
Q ss_pred HHHHHHHHHHHHh----cCCCceEEEEEe
Q 005135 246 EEEVDLVIEISKK----LNVRPVIGARAK 270 (712)
Q Consensus 246 ~~EL~~I~~~a~~----~g~~~~IgLRVn 270 (712)
.+||+..++.+.+ .+.+.-|-+++.
T Consensus 166 ~~el~~al~~a~~~~~~~~~p~liev~i~ 194 (202)
T cd02006 166 PEELAAAFEQAKKLMAEHRVPVVVEAILE 194 (202)
T ss_pred HHHHHHHHHHHHHhcccCCCcEEEEEEec
Confidence 9999988877753 333334445553
No 151
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=27.08 E-value=8.3e+02 Score=26.44 Aligned_cols=132 Identities=18% Similarity=0.188 Sum_probs=77.0
Q ss_pred HHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHH
Q 005135 223 AGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKK 302 (712)
Q Consensus 223 ~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~ 302 (712)
.+-|+.|.+ ...++. -+++-+.+-+.-+++.|++.+. +|-|-+.+. .-|| ...+.+...+..
T Consensus 7 k~il~~A~~-~~yaV~-AfN~~n~e~~~avi~AAee~~s--PvIiq~~~~-------------~~~~-~g~~~~~~~~~~ 68 (284)
T PRK09195 7 KQMLNNAQR-GGYAVP-AFNIHNLETMQVVVETAAELHS--PVIIAGTPG-------------TFSY-AGTEYLLAIVSA 68 (284)
T ss_pred HHHHHHHHH-cCceEE-EEEeCCHHHHHHHHHHHHHhCC--CEEEEcChh-------------HHhh-CCHHHHHHHHHH
Confidence 345666654 345564 6899999999999999998864 344444321 1122 223455666665
Q ss_pred HHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCCCCCCCCCCcCCCHHHH
Q 005135 303 LEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEEY 382 (712)
Q Consensus 303 l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s~~~~~~~s~~ysleey 382 (712)
+.+.-.+ -+.||.--|. +.+.+++++ +.|+. .|.||+|. ++++|=
T Consensus 69 ~A~~~~V--PV~lHLDHg~---~~e~i~~Ai-----------~~Gft----------SVM~DgS~---------l~~eeN 113 (284)
T PRK09195 69 AAKQYHH--PLALHLDHHE---KFDDIAQKV-----------RSGVR----------SVMIDGSH---------LPFAQN 113 (284)
T ss_pred HHHHCCC--CEEEECCCCC---CHHHHHHHH-----------HcCCC----------EEEeCCCC---------CCHHHH
Confidence 5443333 3467765443 454333332 34554 34555542 567766
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEecCcch
Q 005135 383 ASAVVQAIRYVCDRKNVKHPVLCSESGRA 411 (712)
Q Consensus 383 a~~Iv~~l~~~~~~~gv~~p~Li~EPGRa 411 (712)
.+...+ +.+++...|+ .+-.|.|+-
T Consensus 114 i~~T~~-vv~~Ah~~gv---~VEaElG~v 138 (284)
T PRK09195 114 ISLVKE-VVDFCHRFDV---SVEAELGRL 138 (284)
T ss_pred HHHHHH-HHHHHHHcCC---EEEEEEecc
Confidence 555444 4456777787 689999884
No 152
>PRK01060 endonuclease IV; Provisional
Probab=26.89 E-value=7.4e+02 Score=25.80 Aligned_cols=98 Identities=14% Similarity=0.115 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCceeEEEEecCCC----CCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCC
Q 005135 291 LTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQ----IPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGS 366 (712)
Q Consensus 291 l~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSq----i~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s 366 (712)
++.+++.++-+.+++.++ . +..+..|..-. ..+.+....+++.+.+.+....++|.+ +|-+-.|.. +..
T Consensus 44 ~~~~~~~~lk~~~~~~gl-~-~~~~~~h~~~~~nl~~~d~~~r~~s~~~~~~~i~~A~~lga~--~vv~h~G~~--~~~- 116 (281)
T PRK01060 44 LEELNIEAFKAACEKYGI-S-PEDILVHAPYLINLGNPNKEILEKSRDFLIQEIERCAALGAK--LLVFHPGSH--LGD- 116 (281)
T ss_pred CCHHHHHHHHHHHHHcCC-C-CCceEEecceEecCCCCCHHHHHHHHHHHHHHHHHHHHcCCC--EEEEcCCcC--CCC-
Confidence 466777777777777775 4 44455554321 235566667777777777777777876 444444421 111
Q ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHHHHHh-cCCCCCeEEecC
Q 005135 367 KSADSDLSVAYTLEEYASAVVQAIRYVCDR-KNVKHPVLCSES 408 (712)
Q Consensus 367 ~~~~~~~s~~ysleeya~~Iv~~l~~~~~~-~gv~~p~Li~EP 408 (712)
...++..+.+++.+++++.+ .+ .+|.+|+
T Consensus 117 ----------~~~~~~~~~~~e~l~~l~~~~~g---v~l~iEn 146 (281)
T PRK01060 117 ----------IDEEDCLARIAESLNEALDKTQG---VTIVLEN 146 (281)
T ss_pred ----------CcHHHHHHHHHHHHHHHHhcCCC---CEEEEec
Confidence 12233445556666665443 33 4788888
No 153
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=26.70 E-value=1.4e+02 Score=34.43 Aligned_cols=86 Identities=22% Similarity=0.300 Sum_probs=42.8
Q ss_pred eeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcC----CCCcCcCCCCCCCCCCCcCCCHHHHHHHHH
Q 005135 312 FQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGG----GLGIDYDGSKSADSDLSVAYTLEEYASAVV 387 (712)
Q Consensus 312 l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGG----Glgv~Y~~s~~~~~~~s~~ysleeya~~Iv 387 (712)
....-+|+||+-.-. .++....+++.-....-..++||.++| |+|+ |.+.+. +.-.++-++.|.+
T Consensus 229 ~~isDih~GSk~F~~----~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigi-Ypgq~~---eL~i~di~~qy~~--- 297 (481)
T COG1311 229 ALISDIHRGSKEFLE----DEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGI-YPGQEE---ELVIADIYEQYEE--- 297 (481)
T ss_pred EEEeeeecccHHHHH----HHHHHHHHHhcCCcccccceEEEEEeccccccccc-ccCccc---ccccccchHHHHH---
Confidence 345678999973322 233333333221111223568888886 5554 444332 2222334445532
Q ss_pred HHHHHHHHhcCCCCCeEEecCcch
Q 005135 388 QAIRYVCDRKNVKHPVLCSESGRA 411 (712)
Q Consensus 388 ~~l~~~~~~~gv~~p~Li~EPGRa 411 (712)
+.++.++- -+|++|++=||-.
T Consensus 298 --~A~~L~~v-p~~I~v~i~PGnh 318 (481)
T COG1311 298 --LAEFLDQV-PEHIKVFIMPGNH 318 (481)
T ss_pred --HHHHHhhC-CCCceEEEecCCC
Confidence 23333321 2478999999964
No 154
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=26.51 E-value=9e+02 Score=26.68 Aligned_cols=93 Identities=20% Similarity=0.320 Sum_probs=61.1
Q ss_pred CCCCC---CHHHHHHHHHHHHHcCCCCceeEEEEecCCCCCC--------------hHHHHHHHHH-HHHHHHHHHHcCC
Q 005135 287 GKFGL---TTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPS--------------TALLTDGVGE-AAQIYCELVRLGA 348 (712)
Q Consensus 287 SKFGl---~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d--------------~~~~~~ai~~-~~~~~~~L~~~G~ 348 (712)
+++|. +...+.++.++++..|| + +++.||-.-.-.| .+..++++-+ ....+..+++.|+
T Consensus 94 n~yggGnnD~~k~ieiakRAk~~Gm-K--Vl~dFHYSDfwaDPakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~eGi 170 (403)
T COG3867 94 NGYGGGNNDLKKAIEIAKRAKNLGM-K--VLLDFHYSDFWADPAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKEGI 170 (403)
T ss_pred CccCCCcchHHHHHHHHHHHHhcCc-E--EEeeccchhhccChhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45554 44556677778888887 3 5788997543333 3344445443 3445566778899
Q ss_pred CCcEEEEc----CCCCcCcCCCCCCCCCCCcCC-CHHHHHHHHHHHHHHH
Q 005135 349 NMQVIDIG----GGLGIDYDGSKSADSDLSVAY-TLEEYASAVVQAIRYV 393 (712)
Q Consensus 349 ~l~~IDIG----GGlgv~Y~~s~~~~~~~s~~y-sleeya~~Iv~~l~~~ 393 (712)
.+.++-+| |||--| +| ++ .++.++..+.+.++.+
T Consensus 171 ~pdmVQVGNEtn~gflwp-~G----------e~~~f~k~a~L~n~g~~av 209 (403)
T COG3867 171 LPDMVQVGNETNGGFLWP-DG----------EGRNFDKMAALLNAGIRAV 209 (403)
T ss_pred CccceEeccccCCceecc-CC----------CCcChHHHHHHHHHHhhhh
Confidence 99999999 577555 22 12 6888988888877654
No 155
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=26.51 E-value=7.4e+02 Score=25.71 Aligned_cols=18 Identities=17% Similarity=0.158 Sum_probs=10.5
Q ss_pred EEEeCCCCCHHHHHHHHH
Q 005135 214 LLVCNGFKDAGYITLALL 231 (712)
Q Consensus 214 II~~ng~K~~e~I~~Al~ 231 (712)
+.+.+|.++.|.++.++.
T Consensus 79 i~vGGGIrs~e~v~~~l~ 96 (234)
T PRK13587 79 IEVGGGIRTKSQIMDYFA 96 (234)
T ss_pred EEEcCCcCCHHHHHHHHH
Confidence 455555666666665554
No 156
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=26.04 E-value=1.6e+02 Score=32.15 Aligned_cols=109 Identities=17% Similarity=0.248 Sum_probs=68.4
Q ss_pred eCCCccEEEecCCCCcCCcCCcCHHHHHHHhCCCCCCCCCCCCCcE--EEEc-HHHHHHHHHHHHHHHHHhHHhcCCCCc
Q 005135 85 VNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPKSVGGLGLQLPL--IVRL-PDVLRDRLESLHSAFEFAIQTQGYEAR 161 (712)
Q Consensus 85 i~~~G~l~v~p~~~~~l~~~~i~l~el~~~~~~~~~~~~~g~~tPl--~V~d-~d~L~~ni~~l~~af~~a~~~~~y~~~ 161 (712)
|.++-||.|+|...+ -.+.+=+++|++++.+.+...+. -..|+ .|.. .|.| -+.-+.|+++.++ .|.++
T Consensus 86 vsS~yHlEitPSDaG--~~DRvViQellKevAQt~qie~~-~qr~fKvvvi~ead~L---T~dAQ~aLRRTME--kYs~~ 157 (351)
T KOG2035|consen 86 VSSNYHLEITPSDAG--NYDRVVIQELLKEVAQTQQIETQ-GQRPFKVVVINEADEL---TRDAQHALRRTME--KYSSN 157 (351)
T ss_pred ecccceEEeChhhcC--cccHHHHHHHHHHHHhhcchhhc-cccceEEEEEechHhh---hHHHHHHHHHHHH--HHhcC
Confidence 557889999996433 24566789999987765533332 22344 4443 3333 3344556666665 35677
Q ss_pred ceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHh
Q 005135 162 YQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSC 205 (712)
Q Consensus 162 ~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~ 205 (712)
.++. +-||....|++.|...-. .+-+-+-|..|+-..|.-
T Consensus 158 ~RlI--l~cns~SriIepIrSRCl--~iRvpaps~eeI~~vl~~ 197 (351)
T KOG2035|consen 158 CRLI--LVCNSTSRIIEPIRSRCL--FIRVPAPSDEEITSVLSK 197 (351)
T ss_pred ceEE--EEecCcccchhHHhhhee--EEeCCCCCHHHHHHHHHH
Confidence 7876 789999999998877541 133445677777666654
No 157
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=25.69 E-value=89 Score=29.61 Aligned_cols=29 Identities=24% Similarity=0.428 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHc----CCCCcEEEEcCCCC
Q 005135 332 GVGEAAQIYCELVRL----GANMQVIDIGGGLG 360 (712)
Q Consensus 332 ai~~~~~~~~~L~~~----G~~l~~IDIGGGlg 360 (712)
.++++.+++..+.+. .-...++|+|+|.|
T Consensus 5 Ei~~~~~~i~~~~~~~~~~~~~~~vvD~GsG~G 37 (141)
T PF13679_consen 5 EIERMAELIDSLCDSVGESKRCITVVDLGSGKG 37 (141)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCEEEEeCCChh
Confidence 345555555555433 45788999999987
No 158
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=25.12 E-value=1.8e+02 Score=30.72 Aligned_cols=92 Identities=18% Similarity=0.260 Sum_probs=59.9
Q ss_pred cCCcHHHHHHHHHcCCCCccceE----ecCHHHHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECC
Q 005135 170 CNQDRFVVEDIVKFGSQFRFGLE----AGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQ 245 (712)
Q Consensus 170 aN~~~~Vl~~l~~~G~~~~~GlE----vaS~~EL~~Al~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs 245 (712)
.-+++.+++.+...|..| +-+| +.+..++..++.+.- ..+...++--+..+...|+.++.++..|+ ++-.|+|
T Consensus 19 ~~~~p~~~e~~~~~g~D~-v~iDlEH~~~~~~~~~~~~~a~~-~~g~~~~VRv~~~~~~~i~~~Ld~Ga~gI-ivP~v~s 95 (249)
T TIGR02311 19 GLADPYAAEICAGAGFDW-LLIDGEHAPNDVRTILSQLQALA-PYPSSPVVRPAIGDPVLIKQLLDIGAQTL-LVPMIET 95 (249)
T ss_pred eCCCcHHHHHHHhcCCCE-EEEeccCCCCCHHHHHHHHHHHH-hcCCCcEEECCCCCHHHHHHHhCCCCCEE-EecCcCC
Confidence 456688999999988543 2222 136666655555421 01123455556678889999998766564 2568999
Q ss_pred HHHHHHHHHHHHhcCCCceEEEE
Q 005135 246 EEEVDLVIEISKKLNVRPVIGAR 268 (712)
Q Consensus 246 ~~EL~~I~~~a~~~g~~~~IgLR 268 (712)
.+|++.+.+.++. +..|.|
T Consensus 96 ~e~a~~~v~~~~y----~P~G~R 114 (249)
T TIGR02311 96 AEQAEAAVAATRY----PPMGIR 114 (249)
T ss_pred HHHHHHHHHHcCC----CCCCcC
Confidence 9999999888762 456665
No 159
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=25.12 E-value=1.3e+02 Score=32.75 Aligned_cols=56 Identities=20% Similarity=0.295 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHcCC-CCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCC--CCcEEEEcC
Q 005135 293 TTQILRVVKKLEVAEM-LDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGA--NMQVIDIGG 357 (712)
Q Consensus 293 ~~e~~~~l~~l~~~~~-L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~--~l~~IDIGG 357 (712)
.+.+.++++.+++.|. ++ -+|+..|+..... ++.+.+ .+.++.++|. .++.+||..
T Consensus 187 ~~~~~~lv~~l~~~gvpId-gIG~Q~H~~~~~~-~~~i~~-------~l~~~~~~Gl~i~ITElDv~~ 245 (320)
T PF00331_consen 187 RDAYLNLVKDLKARGVPID-GIGLQSHFDAGYP-PEQIWN-------ALDRFASLGLPIHITELDVRD 245 (320)
T ss_dssp HHHHHHHHHHHHHTTHCS--EEEEEEEEETTSS-HHHHHH-------HHHHHHTTTSEEEEEEEEEES
T ss_pred HHHHHHHHHHHHhCCCccc-eechhhccCCCCC-HHHHHH-------HHHHHHHcCCceEEEeeeecC
Confidence 3568889999998887 88 6799999988755 433333 3333455565 566788774
No 160
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=24.94 E-value=3.6e+02 Score=29.36 Aligned_cols=112 Identities=15% Similarity=0.185 Sum_probs=63.3
Q ss_pred CCCCCHHHHHHHHH-hccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHH
Q 005135 218 NGFKDAGYITLALL-ARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQI 296 (712)
Q Consensus 218 ng~K~~e~I~~Al~-~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~ 296 (712)
+++-+.++|+..+. |+..|+.++.-||.+.-...+.+..++++.... . .....+.+-++.++.
T Consensus 76 ~~~YT~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~~~pel~~~~~------------~----~~~~~~~l~~~~~~t 139 (326)
T cd06564 76 DGYYTKEEFKELIAYAKDRGVNIIPEIDSPGHSLAFTKAMPELGLKNP------------F----SKYDKDTLDISNPEA 139 (326)
T ss_pred CCcccHHHHHHHHHHHHHcCCeEeccCCCcHHHHHHHHhhHHhcCCCc------------c----cCCCcccccCCCHHH
Confidence 45567888877666 666899999999999999999887776544321 0 011122333444555
Q ss_pred HHHHHHHHHcCCCCcee--EEEEecCCCCC-----ChHHHHHHHHHHHHHHHHHHHcCCC
Q 005135 297 LRVVKKLEVAEMLDCFQ--LLHFHIGSQIP-----STALLTDGVGEAAQIYCELVRLGAN 349 (712)
Q Consensus 297 ~~~l~~l~~~~~L~~l~--GLHfHiGSqi~-----d~~~~~~ai~~~~~~~~~L~~~G~~ 349 (712)
.++++.+-+. ..+.+. .=.||+|..-. ..+.+..-++++.+++ ++.|..
T Consensus 140 ~~f~~~l~~E-~~~~f~~~~~~~HiGgDE~~~~~~~~~~~~~f~~~~~~~v---~~~gk~ 195 (326)
T cd06564 140 VKFVKALFDE-YLDGFNPKSDTVHIGADEYAGDAGYAEAFRAYVNDLAKYV---KDKGKT 195 (326)
T ss_pred HHHHHHHHHH-HHHhcCCCCCEEEeccccccccCccHHHHHHHHHHHHHHH---HHcCCe
Confidence 5555543211 111133 57899998522 2333444444444443 445643
No 161
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=24.61 E-value=9.7e+02 Score=26.39 Aligned_cols=122 Identities=15% Similarity=0.116 Sum_probs=65.1
Q ss_pred ceEecCHHHHHHHHHhcCCCCCCcEE-EeC-CCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEE
Q 005135 190 GLEAGSKPELLLAMSCLCKGSPEALL-VCN-GFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGA 267 (712)
Q Consensus 190 GlEvaS~~EL~~Al~~G~~~~p~~II-~~n-g~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgL 267 (712)
|+-..|..|...++... .+..++. ++. +.-+.+.++.|..++.-.+++.+.....+.+....+.++++|.. +
T Consensus 57 G~~~~~~~e~i~~~~~~--~~~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~----v 130 (333)
T TIGR03217 57 GFSAHTDLEYIEAAADV--VKRAKVAVLLLPGIGTVHDLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMD----T 130 (333)
T ss_pred CCCCCChHHHHHHHHHh--CCCCEEEEEeccCccCHHHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCe----E
Confidence 44455666654444333 2444543 443 34467889999874322233333344445566666677777643 2
Q ss_pred EEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHH
Q 005135 268 RAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGE 335 (712)
Q Consensus 268 RVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~ 335 (712)
.+++... |..+++++.+.++++.+.|- +++ .|-=..| ...++.+.+-++.
T Consensus 131 ~~~l~~s--------------~~~~~e~l~~~a~~~~~~Ga-~~i-~i~DT~G--~~~P~~v~~~v~~ 180 (333)
T TIGR03217 131 VGFLMMS--------------HMTPPEKLAEQAKLMESYGA-DCV-YIVDSAG--AMLPDDVRDRVRA 180 (333)
T ss_pred EEEEEcc--------------cCCCHHHHHHHHHHHHhcCC-CEE-EEccCCC--CCCHHHHHHHHHH
Confidence 2333211 24678899999999988875 532 2322233 4567654443333
No 162
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=24.35 E-value=9.7e+02 Score=26.29 Aligned_cols=132 Identities=16% Similarity=0.141 Sum_probs=76.1
Q ss_pred HHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHH
Q 005135 223 AGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKK 302 (712)
Q Consensus 223 ~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~ 302 (712)
.+.|+.|.+ ...++. -+++-+++.+.-+.+.|++.+.+ |-|-+.+. ..|| +..+.+..+++.
T Consensus 6 k~lL~~A~~-~~yaV~-AfN~~n~e~~~avi~AAe~~~sP--vIlq~s~~-------------~~~~-~g~~~~~~~~~~ 67 (307)
T PRK05835 6 NEILLKAHK-EGYGVG-AFNFVNFEMLNAIFEAGNEENSP--LFIQASEG-------------AIKY-MGIDMAVGMVKI 67 (307)
T ss_pred HHHHHHHHH-CCceEE-EEEECCHHHHHHHHHHHHHHCCC--EEEEcCcc-------------HHhh-CChHHHHHHHHH
Confidence 455666655 334554 68999999999999999987654 33444221 1233 223445566665
Q ss_pred HHHcC-CCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCCCCCCCCCCcCCCHHH
Q 005135 303 LEVAE-MLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEE 381 (712)
Q Consensus 303 l~~~~-~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s~~~~~~~s~~yslee 381 (712)
+.+.- .+. +.||.--|. +.+.++++ -+.|+.- |.+|+| .++++|
T Consensus 68 ~a~~~~~VP--ValHLDHg~---~~e~i~~a-----------i~~GftS----------VM~DgS---------~l~~ee 112 (307)
T PRK05835 68 MCERYPHIP--VALHLDHGT---TFESCEKA-----------VKAGFTS----------VMIDAS---------HHAFEE 112 (307)
T ss_pred HHHhcCCCe--EEEECCCCC---CHHHHHHH-----------HHcCCCE----------EEEeCC---------CCCHHH
Confidence 54432 233 456654443 55433322 2345543 344444 256776
Q ss_pred HHHHHHHHHHHHHHhcCCCCCeEEecCcch
Q 005135 382 YASAVVQAIRYVCDRKNVKHPVLCSESGRA 411 (712)
Q Consensus 382 ya~~Iv~~l~~~~~~~gv~~p~Li~EPGRa 411 (712)
=.+...+ +-+++..+|+ .+-.|.|+-
T Consensus 113 Ni~~T~~-vve~Ah~~gv---~VEaElG~v 138 (307)
T PRK05835 113 NLELTSK-VVKMAHNAGV---SVEAELGRL 138 (307)
T ss_pred HHHHHHH-HHHHHHHcCC---EEEEEeccc
Confidence 6655444 4457777887 799999985
No 163
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=24.31 E-value=9e+02 Score=25.90 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHHcCCCCceeEEEEecCC
Q 005135 292 TTTQILRVVKKLEVAEMLDCFQLLHFHIGS 321 (712)
Q Consensus 292 ~~~e~~~~l~~l~~~~~L~~l~GLHfHiGS 321 (712)
+.+++..+++.+++.|. .+|+|.|-
T Consensus 171 ~~~~~~~~~~~A~~~g~-----~v~~H~~E 195 (325)
T cd01320 171 PPEKFVRAFQRAREAGL-----RLTAHAGE 195 (325)
T ss_pred CHHHHHHHHHHHHHCCC-----ceEEeCCC
Confidence 67788889999998764 47888864
No 164
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=23.98 E-value=6.6e+02 Score=26.74 Aligned_cols=88 Identities=16% Similarity=0.260 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHHHcCC-CCceeEEEEe----cCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcC
Q 005135 290 GLTTTQILRVVKKLEVAEM-LDCFQLLHFH----IGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYD 364 (712)
Q Consensus 290 Gl~~~e~~~~l~~l~~~~~-L~~l~GLHfH----iGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~ 364 (712)
--+.++..++++.+.+.|. +. -..|+.| .||. |...-.+++.-+.+.+.-.+++| ++.|-+- |+-|-|.
T Consensus 50 DWs~~er~~l~~ai~etgv~ip-SmClSaHRRfPfGS~--D~~~r~~aleiM~KaI~LA~dLG--IRtIQLA-GYDVYYE 123 (287)
T COG3623 50 DWSKEERLALVNAIQETGVRIP-SMCLSAHRRFPFGSK--DEATRQQALEIMEKAIQLAQDLG--IRTIQLA-GYDVYYE 123 (287)
T ss_pred CCCHHHHHHHHHHHHHhCCCcc-chhhhhhccCCCCCC--CHHHHHHHHHHHHHHHHHHHHhC--ceeEeec-cceeeec
Confidence 3456788889998888875 22 3356666 5775 66666677666666555555667 5667776 4777776
Q ss_pred CCCCCCCCCCcCCCHHHHHHHHHHHHH
Q 005135 365 GSKSADSDLSVAYTLEEYASAVVQAIR 391 (712)
Q Consensus 365 ~s~~~~~~~s~~ysleeya~~Iv~~l~ 391 (712)
...+ -|...|.+.+..++.
T Consensus 124 ~~d~--------eT~~rFi~g~~~a~~ 142 (287)
T COG3623 124 EADE--------ETRQRFIEGLKWAVE 142 (287)
T ss_pred cCCH--------HHHHHHHHHHHHHHH
Confidence 4322 366777776666554
No 165
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=23.90 E-value=4.1e+02 Score=27.99 Aligned_cols=77 Identities=26% Similarity=0.207 Sum_probs=41.2
Q ss_pred EEEeCCCCCHHHHHHHHHhccCCCcEEEEECC--HHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCC
Q 005135 214 LLVCNGFKDAGYITLALLARKLDLNVVIVLEQ--EEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGL 291 (712)
Q Consensus 214 II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs--~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl 291 (712)
.+++.++ +.+.++++.. +|+. .+-|-| +.-+..|..+++ .|++ .| | +|| +-
T Consensus 71 ~f~stpf-d~~s~d~l~~---~~~~-~~KIaS~dl~n~~lL~~~A~-tgkP-vI-l-------------STG------~s 123 (241)
T PF03102_consen 71 DFFSTPF-DEESVDFLEE---LGVP-AYKIASGDLTNLPLLEYIAK-TGKP-VI-L-------------STG------MS 123 (241)
T ss_dssp EEEEEE--SHHHHHHHHH---HT-S-EEEE-GGGTT-HHHHHHHHT-T-S--EE-E-------------E-T------T-
T ss_pred EEEECCC-CHHHHHHHHH---cCCC-EEEeccccccCHHHHHHHHH-hCCc-EE-E-------------ECC------CC
Confidence 4667775 5666777654 4444 344433 334555555544 4443 22 1 343 34
Q ss_pred CHHHHHHHHHHHHHcCCCCceeEEEEe
Q 005135 292 TTTQILRVVKKLEVAEMLDCFQLLHFH 318 (712)
Q Consensus 292 ~~~e~~~~l~~l~~~~~L~~l~GLHfH 318 (712)
+.+|+.++++.+++.+.-+ +..|||=
T Consensus 124 tl~EI~~Av~~~~~~~~~~-l~llHC~ 149 (241)
T PF03102_consen 124 TLEEIERAVEVLREAGNED-LVLLHCV 149 (241)
T ss_dssp -HHHHHHHHHHHHHHCT---EEEEEE-
T ss_pred CHHHHHHHHHHHHhcCCCC-EEEEecC
Confidence 6789999999998877766 8999984
No 166
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=23.28 E-value=6.3e+02 Score=23.75 Aligned_cols=83 Identities=16% Similarity=0.102 Sum_probs=44.2
Q ss_pred EEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHH------HHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCC
Q 005135 215 LVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVD------LVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGK 288 (712)
Q Consensus 215 I~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~------~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SK 288 (712)
++..+--+.+.++... ++|++.+|++=+..|.+ .+.+.+...|+.. +-+-+. . .
T Consensus 9 ~~~s~qlt~~d~~~L~---~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y-~~iPv~-----------~----~- 68 (135)
T TIGR01244 9 LYVSPQLTKADAAQAA---QLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTY-HHQPVT-----------A----G- 68 (135)
T ss_pred eeEcCCCCHHHHHHHH---HCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeE-EEeecC-----------C----C-
Confidence 4445656777787643 37898888886554422 2223344444331 222221 0 1
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCceeEEEEecCC
Q 005135 289 FGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGS 321 (712)
Q Consensus 289 FGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGS 321 (712)
+++.+++..+.+.+.+.+. -+.+||-.|.
T Consensus 69 -~~~~~~v~~f~~~~~~~~~---pvL~HC~sG~ 97 (135)
T TIGR01244 69 -DITPDDVETFRAAIGAAEG---PVLAYCRSGT 97 (135)
T ss_pred -CCCHHHHHHHHHHHHhCCC---CEEEEcCCCh
Confidence 3566677666666655442 3467776665
No 167
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=23.27 E-value=2e+02 Score=27.42 Aligned_cols=63 Identities=14% Similarity=0.119 Sum_probs=43.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCC---CCChHHHHHHHHHHHHHHHHHHHcCC
Q 005135 286 KGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQ---IPSTALLTDGVGEAAQIYCELVRLGA 348 (712)
Q Consensus 286 ~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSq---i~d~~~~~~ai~~~~~~~~~L~~~G~ 348 (712)
..+.|+++..+.++.+.|.+.|.+....|.=..+..+ +.+......+-.....++.++..+|+
T Consensus 42 A~~~~VNpnTv~raY~eLE~eG~i~t~rg~G~fV~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~G~ 107 (125)
T COG1725 42 AKDLGVNPNTVQRAYQELEREGIVETKRGKGTFVTEDAKEILDQLKRELAEEELEEFIEEAKALGL 107 (125)
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCEEEecCeeEEEcCCchhhHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3567999999999999999999987677776666655 33333334444445556666666554
No 168
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=23.16 E-value=3.5e+02 Score=25.74 Aligned_cols=53 Identities=13% Similarity=0.121 Sum_probs=32.9
Q ss_pred HHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcC
Q 005135 298 RVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGID 362 (712)
Q Consensus 298 ~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~ 362 (712)
++++.+++.+- + +.|++..+++.. ..+.++...|++.|..=-.+=+||++.++
T Consensus 41 ~~v~aa~~~~a-d-iVglS~L~t~~~----------~~~~~~~~~l~~~gl~~v~vivGG~~~i~ 93 (128)
T cd02072 41 EFIDAAIETDA-D-AILVSSLYGHGE----------IDCKGLREKCDEAGLKDILLYVGGNLVVG 93 (128)
T ss_pred HHHHHHHHcCC-C-EEEEeccccCCH----------HHHHHHHHHHHHCCCCCCeEEEECCCCCC
Confidence 34555555543 6 889998888743 23334555667777622446678888765
No 169
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=22.81 E-value=2.4e+02 Score=25.11 Aligned_cols=81 Identities=23% Similarity=0.320 Sum_probs=50.5
Q ss_pred cCCcHHHHHHHH-HcCCCCccceEecCHHHHHHHHHhcCCCCCCcEEEeCCCCC-HHHHHHHHHhccCCCcEEEEEC---
Q 005135 170 CNQDRFVVEDIV-KFGSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKD-AGYITLALLARKLDLNVVIVLE--- 244 (712)
Q Consensus 170 aN~~~~Vl~~l~-~~G~~~~~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng~K~-~e~I~~Al~~~~~G~~v~IvVD--- 244 (712)
++.++.-.+.+. +.|. . -..|..|+...- +++-++++.+... .+.+..+++ .|.. +.+|
T Consensus 32 ~d~~~~~~~~~~~~~~~----~-~~~~~~~ll~~~------~~D~V~I~tp~~~h~~~~~~~l~---~g~~--v~~EKP~ 95 (120)
T PF01408_consen 32 CDPDPERAEAFAEKYGI----P-VYTDLEELLADE------DVDAVIIATPPSSHAEIAKKALE---AGKH--VLVEKPL 95 (120)
T ss_dssp ECSSHHHHHHHHHHTTS----E-EESSHHHHHHHT------TESEEEEESSGGGHHHHHHHHHH---TTSE--EEEESSS
T ss_pred EeCCHHHHHHHHHHhcc----c-chhHHHHHHHhh------cCCEEEEecCCcchHHHHHHHHH---cCCE--EEEEcCC
Confidence 555665555543 3442 2 455655554322 3467888888544 455666665 4554 5566
Q ss_pred --CHHHHHHHHHHHHhcCCCceEE
Q 005135 245 --QEEEVDLVIEISKKLNVRPVIG 266 (712)
Q Consensus 245 --s~~EL~~I~~~a~~~g~~~~Ig 266 (712)
+++|+++|.+.+++.++...||
T Consensus 96 ~~~~~~~~~l~~~a~~~~~~~~Vg 119 (120)
T PF01408_consen 96 ALTLEEAEELVEAAKEKGVKVMVG 119 (120)
T ss_dssp SSSHHHHHHHHHHHHHHTSCEEEE
T ss_pred cCCHHHHHHHHHHHHHhCCEEEEe
Confidence 8999999999999887765443
No 170
>PF03664 Glyco_hydro_62: Glycosyl hydrolase family 62 ; InterPro: IPR005193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha -L-arabinofuranosidases (3.2.1.55 from EC) which are all members of glycoside hydrolase family 62 (GH62 from CAZY). This enzyme hydrolyzed aryl alpha-L-arabinofuranosides and cleaves arabinosyl side chains from arabinoxylan and arabinan.; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process
Probab=22.49 E-value=1.7e+02 Score=31.01 Aligned_cols=33 Identities=24% Similarity=0.466 Sum_probs=24.5
Q ss_pred c-chhccccC-CCCCCCCCcEEEEEecCCCCeEEEEEc
Q 005135 561 G-AYEEALGG-VHNLFGGPSVVRVLQSDGPHSFAVTRA 596 (712)
Q Consensus 561 G-AYq~~m~s-~fNlf~~p~~V~V~~~d~~g~~~i~r~ 596 (712)
| .|+.+|++ ..|||.-..++.|. |.++|.++-+
T Consensus 171 gs~~~vvmsd~~~nLFEA~~VYkv~---G~~~YLmiVE 205 (271)
T PF03664_consen 171 GSSYTVVMSDTRNNLFEAVQVYKVK---GQNQYLMIVE 205 (271)
T ss_pred CCceEEEEecCccceeeeeEEEEEc---CCceEEEEEE
Confidence 5 67777887 69999888888775 4567776653
No 171
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=21.93 E-value=5.6e+02 Score=25.78 Aligned_cols=40 Identities=23% Similarity=0.237 Sum_probs=29.0
Q ss_pred hccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeC
Q 005135 232 ARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLR 272 (712)
Q Consensus 232 ~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~ 272 (712)
++.+|.. .+.|++.+||+...+.+.+.+.+.-|-+++.+.
T Consensus 147 A~a~G~~-~~~v~~~~el~~al~~a~~~~gp~lIeV~v~~~ 186 (205)
T cd02003 147 ARSLGAR-VEKVKTIEELKAALAKAKASDRTTVIVIKTDPK 186 (205)
T ss_pred HHhCCCE-EEEECCHHHHHHHHHHHHhCCCCEEEEEEeecc
Confidence 3346776 577899999999888877655555666777654
No 172
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=21.82 E-value=1.1e+03 Score=26.58 Aligned_cols=98 Identities=13% Similarity=0.136 Sum_probs=57.3
Q ss_pred HHHHHHHHHHcCCCCceeE----EE----EecCCC-CCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCC
Q 005135 296 ILRVVKKLEVAEMLDCFQL----LH----FHIGSQ-IPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGS 366 (712)
Q Consensus 296 ~~~~l~~l~~~~~L~~l~G----LH----fHiGSq-i~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s 366 (712)
+.++.+.+++.|+ . +.+ +. ++.||- .+|.+.-+.+++.+.+.++..+++|.+. |+|=+|=|.+|.+.
T Consensus 71 ~~~~~~~l~~~GL-~-v~~i~p~~f~~~~~~~GSLt~pD~~vR~~AIe~~k~~idiA~eLGa~~--I~iW~~DG~~~~g~ 146 (378)
T TIGR02635 71 YEELARYAEELGL-K-IGAINPNLFQDDDYKFGSLTHPDKRIRRKAIDHLLECVDIAKKTGSKD--ISLWLADGTNYPGQ 146 (378)
T ss_pred HHHHHHHHHHcCC-c-eeeeeCCccCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCe--EEEecCCcCcCCcc
Confidence 4455555677765 4 443 22 233663 4455666677777777776666778763 44333333444331
Q ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecC
Q 005135 367 KSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSES 408 (712)
Q Consensus 367 ~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EP 408 (712)
-++.+--+.+++.++++|... .+..++.+||
T Consensus 147 ----------~~~~~a~~rl~esL~eI~~~~-~~~v~~~iE~ 177 (378)
T TIGR02635 147 ----------DDFRSRKDRLEESLAEVYEHL-GADMRLLIEY 177 (378)
T ss_pred ----------cCHHHHHHHHHHHHHHHHHhC-cCCCEEEEec
Confidence 245554477888888888543 2466899976
No 173
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=21.46 E-value=6.2e+02 Score=28.46 Aligned_cols=164 Identities=17% Similarity=0.073 Sum_probs=88.6
Q ss_pred HHHHHHHHHcCCCCccceEecCHHHHHHHHHhcCCCCCC-------cEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCH
Q 005135 174 RFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPE-------ALLVCNGFKDAGYITLALLARKLDLNVVIVLEQE 246 (712)
Q Consensus 174 ~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~G~~~~p~-------~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~ 246 (712)
+.|-+.|..-|.+. ..|..+|...++....++.- |+.+..|..-.++|..++....+-+-+...++..
T Consensus 157 PeI~eVllSGGDPL-----~ls~~~L~~ll~~L~~IpHv~iiRi~TR~pvv~P~RIt~~L~~~l~~~~~~v~~~tH~NHp 231 (369)
T COG1509 157 PEIREVLLSGGDPL-----SLSDKKLEWLLKRLRAIPHVKIIRIGTRLPVVLPQRITDELCEILGKSRKPVWLVTHFNHP 231 (369)
T ss_pred chhheEEecCCCcc-----ccCHHHHHHHHHHHhcCCceeEEEeecccceechhhccHHHHHHHhccCceEEEEcccCCh
Confidence 34555566656433 45666666555544323332 2223344333344555554312223334567888
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCC--HHHHHHHHHHHHHcCCCCceeEEEEecCCCCC
Q 005135 247 EEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLT--TTQILRVVKKLEVAEMLDCFQLLHFHIGSQIP 324 (712)
Q Consensus 247 ~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~--~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~ 324 (712)
.|+..-.+.|-+. -...|+.+.-.+- -.+ |++ ++-+.++.+.|...+..- --.|..--..
T Consensus 232 ~Eit~e~~~A~~~--L~~aGv~l~NQsV---------LLr---GVND~~evl~~L~~~L~~~gV~P----YYl~~~D~~~ 293 (369)
T COG1509 232 NEITPEAREACAK--LRDAGVPLLNQSV---------LLR---GVNDDPEVLKELSRALFDAGVKP----YYLHQLDLVQ 293 (369)
T ss_pred hhcCHHHHHHHHH--HHHcCceeecchh---------eec---ccCCCHHHHHHHHHHHHHcCCcc----eEEeccCccC
Confidence 8877655444221 1233343321100 001 553 445577888888877532 3333333345
Q ss_pred ChHHHHHHHHHHHHHHHHHHHc--C--CCCcEEEEcCCCC
Q 005135 325 STALLTDGVGEAAQIYCELVRL--G--ANMQVIDIGGGLG 360 (712)
Q Consensus 325 d~~~~~~ai~~~~~~~~~L~~~--G--~~l~~IDIGGGlg 360 (712)
....|+-.+.++.+++.+|+.. | .+.-.+|++||=|
T Consensus 294 G~~hfr~~i~~~~~i~~~lr~~~SG~~~P~~v~d~pgg~g 333 (369)
T COG1509 294 GAAHFRVPIAEGLQIVEELRGRTSGYAVPTLVVDIPGGGG 333 (369)
T ss_pred CccceeccHHHHHHHHHHHHHhCCCcccceeEEecCCCCC
Confidence 6677888899999999999863 5 4667899999843
No 174
>PF13941 MutL: MutL protein
Probab=21.43 E-value=8.3e+02 Score=28.35 Aligned_cols=136 Identities=21% Similarity=0.241 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcCCCCCCcEEEeCCC--CCHHHH-HHHHHhccCCCcE-EEEECCHHHHHHHHHHHHhcCCCceEEEEEee
Q 005135 196 KPELLLAMSCLCKGSPEALLVCNGF--KDAGYI-TLALLARKLDLNV-VIVLEQEEEVDLVIEISKKLNVRPVIGARAKL 271 (712)
Q Consensus 196 ~~EL~~Al~~G~~~~p~~II~~ng~--K~~e~I-~~Al~~~~~G~~v-~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~ 271 (712)
..+++..... .|+-|++++|. -+.+.+ ..|-.-.+.+.++ +|..-|.+--+.+.++..+.++.. .+-.
T Consensus 114 ~~~l~~i~~~----~PDiILLaGGtDgG~~~~il~nA~~La~~~~~~pVIyAGN~~a~~~v~~il~~~~~~~----~~~~ 185 (457)
T PF13941_consen 114 EEDLEEIREI----RPDIILLAGGTDGGNKEVILHNAEMLAEANLRIPVIYAGNKAAQDEVEEILEKAGKEV----VITE 185 (457)
T ss_pred HHHHHHHhcc----CCCEEEEeCCccCCchHHHHHHHHHHHhCCCCCcEEEECCHHHHHHHHHHHHhCCCCE----EEeC
Confidence 3445444333 68888888873 233333 3332222234433 677788777777777766444331 2221
Q ss_pred CCCCCCCccccCCCCCCCC-CCHHHHHHHHHHHHHcCCCCceeEEEE---ecCC-CCCChHHHHHHHHHHHHHHHHHHHc
Q 005135 272 RTKHSGHFGSTSGEKGKFG-LTTTQILRVVKKLEVAEMLDCFQLLHF---HIGS-QIPSTALLTDGVGEAAQIYCELVRL 346 (712)
Q Consensus 272 ~~~~~~~~~~tgg~~SKFG-l~~~e~~~~l~~l~~~~~L~~l~GLHf---HiGS-qi~d~~~~~~ai~~~~~~~~~L~~~ 346 (712)
+. .-+++ +.++-+.++++.+=....++ .+|++- +++. -++.+. ++-++.+++.+- .
T Consensus 186 NV------------~P~i~~ln~~paR~~I~~~F~~~Ii~-akGl~~~~~~~~~~i~PTP~----AVl~~~~lla~~--~ 246 (457)
T PF13941_consen 186 NV------------MPKIDVLNVEPAREAIREVFLRHIIQ-AKGLSKLREMVDGPIMPTPA----AVLRAAELLAEG--G 246 (457)
T ss_pred CC------------CCCCCCcChHHHHHHHHHHHHHHHhc-CCCHHHHHHHhCCcccCCHH----HHHHHHHHHHhc--c
Confidence 11 11222 23444444444332222222 334432 3333 245554 555555555432 3
Q ss_pred CCCCcEEEEcCC
Q 005135 347 GANMQVIDIGGG 358 (712)
Q Consensus 347 G~~l~~IDIGGG 358 (712)
+-++=.|||||-
T Consensus 247 ~g~llvVDIGGA 258 (457)
T PF13941_consen 247 IGDLLVVDIGGA 258 (457)
T ss_pred cCCEEEEEccCc
Confidence 447889999984
No 175
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=20.57 E-value=1.1e+03 Score=25.50 Aligned_cols=132 Identities=17% Similarity=0.177 Sum_probs=76.0
Q ss_pred HHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHH
Q 005135 223 AGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKK 302 (712)
Q Consensus 223 ~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~ 302 (712)
.+.|+.|.+ ...++. -+++-+++.++-+++.|++.+. +|-|-+.+.. -|| ...+.+..+++.
T Consensus 5 k~ll~~A~~-~~yAV~-AfN~~n~e~~~avi~AAee~~s--PvIlq~s~~~-------------~~~-~~~~~~~~~~~~ 66 (282)
T TIGR01858 5 KYMLQDAQA-GGYAVP-AFNIHNLETIQAVVETAAEMRS--PVILAGTPGT-------------FKH-AGTEYIVALCSA 66 (282)
T ss_pred HHHHHHHHH-cCCeEE-EEEeCCHHHHHHHHHHHHHhCC--CEEEEeCccH-------------Hhh-CCHHHHHHHHHH
Confidence 345666654 234554 6899999999999999998765 3445443211 122 224455566665
Q ss_pred HHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCCCCCCCCCCcCCCHHHH
Q 005135 303 LEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEEY 382 (712)
Q Consensus 303 l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s~~~~~~~s~~ysleey 382 (712)
+.+.-.+ -+.||.--|. +.+.++ ++ -+.|+. .|.+|+|. ++++|=
T Consensus 67 ~a~~~~V--PValHLDHg~---~~e~i~----~a-------i~~GFt----------SVM~DgS~---------lp~eeN 111 (282)
T TIGR01858 67 ASTTYNM--PLALHLDHHE---SLDDIR----QK-------VHAGVR----------SAMIDGSH---------FPFAQN 111 (282)
T ss_pred HHHHCCC--CEEEECCCCC---CHHHHH----HH-------HHcCCC----------EEeecCCC---------CCHHHH
Confidence 5443333 3467764443 444332 22 234554 34555542 567776
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEecCcch
Q 005135 383 ASAVVQAIRYVCDRKNVKHPVLCSESGRA 411 (712)
Q Consensus 383 a~~Iv~~l~~~~~~~gv~~p~Li~EPGRa 411 (712)
.+...+ +.+++...|+ .+-.|.|+-
T Consensus 112 i~~T~~-vv~~Ah~~gv---~VEaElG~v 136 (282)
T TIGR01858 112 VKLVKE-VVDFCHRQDC---SVEAELGRL 136 (282)
T ss_pred HHHHHH-HHHHHHHcCC---eEEEEEEec
Confidence 655444 4456777787 688898874
No 176
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=20.51 E-value=9.7e+02 Score=24.87 Aligned_cols=67 Identities=6% Similarity=0.128 Sum_probs=43.7
Q ss_pred CcHHHHHHHHHcC-CCCccceEecCHHHHHHHHHhcCCCCCCcEEEeCC-CCCHHHHHHHHHhccCCCcEEEEEC
Q 005135 172 QDRFVVEDIVKFG-SQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNG-FKDAGYITLALLARKLDLNVVIVLE 244 (712)
Q Consensus 172 ~~~~Vl~~l~~~G-~~~~~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng-~K~~e~I~~Al~~~~~G~~v~IvVD 244 (712)
.|..+++.|.+.- .+..+|-=+.|...++..+.+|. +++++..- .++++.++.+.. +.|-++++.+|
T Consensus 63 ~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~Ga----~kvvigt~a~~~~~~l~~~~~--~fg~~ivvslD 131 (234)
T PRK13587 63 REFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGI----NYCIVGTKGIQDTDWLKEMAH--TFPGRIYLSVD 131 (234)
T ss_pred chHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCCC----CEEEECchHhcCHHHHHHHHH--HcCCCEEEEEE
Confidence 3456676666632 33345556789999999999984 67777554 577787777665 34444455555
No 177
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=20.28 E-value=5.2e+02 Score=25.44 Aligned_cols=74 Identities=14% Similarity=0.103 Sum_probs=43.0
Q ss_pred cCHHHHHHHHHhcCCCCCCcEEEeCCCCCH-H------------------HHHHHHHhccCCCcEEEEECCHHHHHHHHH
Q 005135 194 GSKPELLLAMSCLCKGSPEALLVCNGFKDA-G------------------YITLALLARKLDLNVVIVLEQEEEVDLVIE 254 (712)
Q Consensus 194 aS~~EL~~Al~~G~~~~p~~II~~ng~K~~-e------------------~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~ 254 (712)
-+..||..|.+.+. +.--++++|+.-.. . ...++..++.+|.. .+.|++.+||+..++
T Consensus 82 ~~~~eL~ta~~~~l--pi~ivV~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~-~~~v~~~~el~~al~ 158 (186)
T cd02015 82 MNIQELATAAQYNL--PVKIVILNNGSLGMVRQWQELFYEGRYSHTTLDSNPDFVKLAEAYGIK-GLRVEKPEELEAALK 158 (186)
T ss_pred ccHHHHHHHHHhCC--CeEEEEEECCccHHHHHHHHHHcCCceeeccCCCCCCHHHHHHHCCCc-eEEeCCHHHHHHHHH
Confidence 36789998888873 33333555552110 0 01122223336766 578999999999888
Q ss_pred HHHhcCCCceEEEEEe
Q 005135 255 ISKKLNVRPVIGARAK 270 (712)
Q Consensus 255 ~a~~~g~~~~IgLRVn 270 (712)
.+.+.+.+.-|-+++.
T Consensus 159 ~a~~~~~p~liev~~~ 174 (186)
T cd02015 159 EALASDGPVLLDVLVD 174 (186)
T ss_pred HHHhCCCCEEEEEEeC
Confidence 8876544444445554
No 178
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=20.01 E-value=3.7e+02 Score=29.38 Aligned_cols=66 Identities=12% Similarity=0.052 Sum_probs=40.3
Q ss_pred HHHHHHHHH----cCCCCccceEecC---HHHHHHHHHhcCCCCCCcEEEeCC--CCCHHHHHHHHHhccCCCcEEEEEC
Q 005135 174 RFVVEDIVK----FGSQFRFGLEAGS---KPELLLAMSCLCKGSPEALLVCNG--FKDAGYITLALLARKLDLNVVIVLE 244 (712)
Q Consensus 174 ~~Vl~~l~~----~G~~~~~GlEvaS---~~EL~~Al~~G~~~~p~~II~~ng--~K~~e~I~~Al~~~~~G~~v~IvVD 244 (712)
..+++..++ .|++-....+.++ ..-+++..+.| ++|+++++++- ..|.++++..+. .| +.+.+|
T Consensus 141 ~k~lrAaa~A~~~TG~pI~~H~~~g~~~~~e~~~il~e~G--v~~~rvvigH~D~~~D~~y~~~la~---~G--~~l~~D 213 (308)
T PF02126_consen 141 EKVLRAAARAHKETGAPISTHTGRGTRMGLEQLDILEEEG--VDPSRVVIGHMDRNPDLDYHRELAD---RG--VYLEFD 213 (308)
T ss_dssp HHHHHHHHHHHHHHT-EEEEEESTTGTCHHHHHHHHHHTT----GGGEEETSGGGST-HHHHHHHHH---TT---EEEET
T ss_pred HHHHHHHHHHHHHhCCeEEEcCCCCCcCHHHHHHHHHHcC--CChhHeEEeCCCCCCCHHHHHHHHh---cC--CEEEec
Confidence 445555443 4544333444454 45567777888 69999999875 577788877765 34 679999
Q ss_pred CH
Q 005135 245 QE 246 (712)
Q Consensus 245 s~ 246 (712)
.+
T Consensus 214 ~~ 215 (308)
T PF02126_consen 214 TI 215 (308)
T ss_dssp TT
T ss_pred CC
Confidence 88
Done!