Query 005135
Match_columns 712
No_of_seqs 398 out of 2365
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 16:26:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005135.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005135hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n2o_A ADC, biosynthetic argin 100.0 8E-121 3E-125 1050.3 55.9 573 62-670 7-639 (648)
2 3nzq_A ADC, biosynthetic argin 100.0 3E-118 1E-122 1031.3 58.3 573 63-671 29-658 (666)
3 3nzp_A Arginine decarboxylase; 100.0 2E-113 7E-118 986.6 60.2 556 72-671 3-609 (619)
4 3vab_A Diaminopimelate decarbo 100.0 4.2E-69 1.4E-73 601.5 41.9 415 82-613 25-441 (443)
5 3n2b_A Diaminopimelate decarbo 100.0 5.7E-69 1.9E-73 600.2 37.2 423 71-613 17-440 (441)
6 2o0t_A Diaminopimelate decarbo 100.0 7.7E-65 2.6E-69 570.7 40.3 428 76-610 12-448 (467)
7 7odc_A Protein (ornithine deca 100.0 1.2E-62 3.9E-67 546.8 34.7 401 104-595 16-418 (424)
8 2j66_A BTRK, decarboxylase; bu 100.0 9.6E-62 3.3E-66 539.1 41.4 415 104-617 4-424 (428)
9 3mt1_A Putative carboxynorsper 100.0 1E-62 3.5E-67 537.2 32.9 362 126-609 2-364 (365)
10 1twi_A Diaminopimelate decarbo 100.0 1.6E-61 5.5E-66 538.2 41.2 425 78-611 2-429 (434)
11 3n29_A Carboxynorspermidine de 100.0 1.1E-61 3.7E-66 537.7 31.6 375 126-608 42-417 (418)
12 1knw_A Diaminopimelate decarbo 100.0 1.1E-57 3.9E-62 506.7 42.9 395 105-611 14-420 (425)
13 2qgh_A Diaminopimelate decarbo 100.0 5E-57 1.7E-61 501.3 41.6 399 104-610 20-419 (425)
14 2oo0_A ODC, ornithine decarbox 100.0 1.1E-55 3.9E-60 496.6 41.6 391 104-583 26-419 (471)
15 3btn_A Antizyme inhibitor 1; T 100.0 8.7E-57 3E-61 502.9 28.5 409 103-607 16-426 (448)
16 1f3t_A ODC, ornithine decarbox 100.0 3.7E-54 1.3E-58 478.5 37.2 391 104-583 17-409 (425)
17 2yxx_A Diaminopimelate decarbo 100.0 1.4E-53 4.7E-58 467.6 34.1 380 108-609 4-384 (386)
18 2p3e_A Diaminopimelate decarbo 100.0 1.1E-52 3.6E-57 465.2 39.9 406 83-609 10-417 (420)
19 2nva_A Arginine decarboxylase, 100.0 1.4E-52 4.8E-57 457.4 36.1 367 108-582 5-372 (372)
20 2plj_A Lysine/ornithine decarb 100.0 1.4E-52 4.7E-57 465.2 34.8 363 107-583 45-408 (419)
21 1xfc_A Alanine racemase; alpha 99.9 9.9E-26 3.4E-30 246.8 23.5 247 126-430 9-264 (384)
22 2dy3_A Alanine racemase; alpha 99.9 1E-24 3.4E-29 236.7 21.2 242 127-430 2-249 (361)
23 1vfs_A Alanine racemase; TIM-b 99.9 1.6E-24 5.5E-29 237.4 21.2 250 126-430 5-263 (386)
24 2vd8_A Alanine racemase; pyrid 99.9 1.4E-24 4.7E-29 238.4 20.0 250 126-430 9-265 (391)
25 1bd0_A Alanine racemase; isome 99.9 1.4E-23 4.9E-28 230.3 19.3 245 127-430 6-258 (388)
26 3anu_A D-serine dehydratase; P 99.9 1.6E-22 5.5E-27 220.2 21.1 253 126-429 10-275 (376)
27 3co8_A Alanine racemase; prote 99.9 1.2E-20 4.1E-25 206.3 21.0 247 126-430 7-260 (380)
28 3gwq_A D-serine deaminase; str 99.8 1.6E-19 5.6E-24 200.4 27.3 204 125-358 43-252 (426)
29 1rcq_A Catabolic alanine racem 99.8 1.2E-18 4.2E-23 188.7 22.2 238 128-430 3-246 (357)
30 2rjg_A Alanine racemase; alpha 99.8 1.2E-17 4.1E-22 182.6 24.3 241 127-430 22-268 (379)
31 3llx_A Predicted amino acid al 99.8 1.4E-17 4.7E-22 181.8 18.2 205 126-364 12-224 (376)
32 3cpg_A Uncharacterized protein 99.6 6E-15 2.1E-19 155.0 20.1 197 131-357 25-246 (282)
33 4ecl_A Serine racemase, vantg; 99.6 8.9E-15 3E-19 159.8 16.8 195 129-363 7-209 (374)
34 3e5p_A Alanine racemase; ALR, 99.5 1.6E-13 5.5E-18 149.7 13.7 162 126-322 6-173 (371)
35 3kw3_A Alanine racemase; niaid 99.4 6.3E-13 2.2E-17 145.2 15.3 161 126-322 18-183 (376)
36 3sy1_A UPF0001 protein YGGS; e 99.4 1.6E-11 5.5E-16 126.6 21.5 199 137-357 4-205 (245)
37 4a3q_A Alanine racemase 1; iso 99.4 3E-12 1E-16 140.1 15.8 161 126-322 6-172 (382)
38 3mub_A Alanine racemase; alpha 99.4 9.9E-12 3.4E-16 135.4 18.3 159 126-322 6-169 (367)
39 3hur_A Alanine racemase; struc 99.1 8.1E-10 2.8E-14 121.3 15.0 157 126-322 7-169 (395)
40 3r79_A Uncharacterized protein 99.0 8.8E-08 3E-12 98.6 23.1 189 138-356 6-196 (244)
41 1ct5_A Protein (yeast hypothet 98.9 4.6E-08 1.6E-12 101.4 19.0 194 138-356 14-221 (256)
42 1ydn_A Hydroxymethylglutaryl-C 89.7 14 0.00047 38.1 17.9 103 244-386 152-257 (295)
43 2ftp_A Hydroxymethylglutaryl-C 83.5 36 0.0012 35.2 17.0 102 245-386 157-261 (302)
44 3ble_A Citramalate synthase fr 80.1 47 0.0016 35.0 16.6 110 232-386 146-265 (337)
45 3vni_A Xylose isomerase domain 79.6 12 0.00039 37.7 11.3 102 291-409 44-153 (294)
46 2cw6_A Hydroxymethylglutaryl-C 78.7 63 0.0022 33.2 17.9 152 191-386 78-258 (298)
47 1nvm_A HOA, 4-hydroxy-2-oxoval 72.3 21 0.00071 37.8 11.2 140 196-387 96-247 (345)
48 2ztj_A Homocitrate synthase; ( 71.9 68 0.0023 34.4 15.3 176 162-387 42-242 (382)
49 1fob_A Beta-1,4-galactanase; B 70.0 38 0.0013 35.6 12.6 64 189-265 5-78 (334)
50 2nx9_A Oxaloacetate decarboxyl 64.3 99 0.0034 34.2 14.9 104 196-323 103-214 (464)
51 3ivs_A Homocitrate synthase, m 61.5 1.6E+02 0.0054 32.1 15.7 136 162-322 78-235 (423)
52 3hgj_A Chromate reductase; TIM 61.1 42 0.0014 35.5 10.8 54 252-321 209-262 (349)
53 1i60_A IOLI protein; beta barr 59.3 68 0.0023 31.3 11.6 97 295-411 47-146 (278)
54 1ur4_A Galactanase; hydrolase, 57.7 2.1E+02 0.0071 30.9 18.8 60 189-262 26-104 (399)
55 1qtw_A Endonuclease IV; DNA re 55.7 68 0.0023 31.6 10.9 99 291-409 44-147 (285)
56 3obe_A Sugar phosphate isomera 55.4 56 0.0019 33.3 10.4 95 295-409 77-171 (305)
57 2x7v_A Probable endonuclease 4 55.1 72 0.0025 31.4 11.0 98 291-409 44-146 (287)
58 3dxi_A Putative aldolase; TIM 54.3 1.3E+02 0.0044 31.5 13.0 93 225-323 89-199 (320)
59 1ur4_A Galactanase; hydrolase, 53.0 2.5E+02 0.0084 30.3 19.5 64 291-357 86-164 (399)
60 3rmj_A 2-isopropylmalate synth 52.6 1.4E+02 0.0048 31.8 13.2 170 125-322 23-216 (370)
61 1xla_A D-xylose isomerase; iso 51.2 1.2E+02 0.0042 32.1 12.6 101 294-409 69-182 (394)
62 3cqj_A L-ribulose-5-phosphate 50.9 1.1E+02 0.0036 30.6 11.5 103 290-409 62-168 (295)
63 3m0m_A L-rhamnose isomerase; b 50.2 1.1E+02 0.0039 33.4 12.2 100 294-408 107-220 (438)
64 3qc0_A Sugar isomerase; TIM ba 49.5 91 0.0031 30.4 10.6 96 294-408 45-143 (275)
65 1ydo_A HMG-COA lyase; TIM-barr 48.4 89 0.003 32.4 10.6 102 245-386 155-259 (307)
66 3tva_A Xylose isomerase domain 48.1 80 0.0027 31.4 10.0 100 291-409 48-160 (290)
67 3l5l_A Xenobiotic reductase A; 47.1 45 0.0015 35.4 8.3 48 258-321 221-269 (363)
68 1k77_A EC1530, hypothetical pr 46.6 1.3E+02 0.0044 29.1 11.1 94 297-410 43-146 (260)
69 3tc3_A UV damage endonuclease; 46.2 2.1E+02 0.0073 29.8 12.9 103 243-360 56-168 (310)
70 1hjs_A Beta-1,4-galactanase; 4 46.2 80 0.0027 33.1 9.9 66 291-357 57-134 (332)
71 1muw_A Xylose isomerase; atomi 45.9 1.1E+02 0.0039 32.2 11.3 101 294-409 69-182 (386)
72 1rqb_A Transcarboxylase 5S sub 45.1 2.7E+02 0.0094 31.3 14.5 104 196-323 120-233 (539)
73 1fob_A Beta-1,4-galactanase; B 45.0 1.3E+02 0.0045 31.3 11.4 91 292-393 58-165 (334)
74 3ngf_A AP endonuclease, family 44.4 1.3E+02 0.0046 29.5 10.9 92 296-408 50-151 (269)
75 3dx5_A Uncharacterized protein 44.2 87 0.003 31.0 9.5 97 293-408 47-143 (286)
76 3gr7_A NADPH dehydrogenase; fl 43.6 1E+02 0.0034 32.5 10.2 44 262-321 209-252 (340)
77 1xim_A D-xylose isomerase; iso 42.9 1.2E+02 0.0042 32.0 11.0 99 294-409 69-182 (393)
78 1bxb_A Xylose isomerase; xylos 41.2 2.2E+02 0.0075 30.0 12.6 102 294-409 69-182 (387)
79 1nvm_A HOA, 4-hydroxy-2-oxoval 40.0 3.4E+02 0.012 28.2 14.5 133 173-335 32-186 (345)
80 1ydn_A Hydroxymethylglutaryl-C 39.1 3.2E+02 0.011 27.6 13.4 75 245-335 118-192 (295)
81 2xvc_A ESCRT-III, SSO0910; cel 38.8 13 0.00044 29.3 1.7 25 286-310 32-56 (59)
82 3kws_A Putative sugar isomeras 37.8 1.8E+02 0.006 28.7 10.7 102 294-409 64-167 (287)
83 2qf7_A Pyruvate carboxylase pr 35.9 4.8E+02 0.016 32.1 15.9 32 290-323 734-765 (1165)
84 3ktc_A Xylose isomerase; putat 35.2 3.6E+02 0.012 27.4 12.8 97 295-407 62-167 (333)
85 2dqw_A Dihydropteroate synthas 35.1 3.9E+02 0.013 27.5 13.4 104 175-305 94-218 (294)
86 1z41_A YQJM, probable NADH-dep 34.7 93 0.0032 32.5 8.2 44 262-321 209-252 (338)
87 1gvf_A Tagatose-bisphosphate a 34.5 4E+02 0.014 27.4 13.2 133 222-411 6-138 (286)
88 2zvr_A Uncharacterized protein 33.5 2.1E+02 0.0071 28.3 10.4 96 295-409 69-171 (290)
89 3bg3_A Pyruvate carboxylase, m 30.1 7.1E+02 0.024 28.9 15.3 104 196-323 200-318 (718)
90 3u0h_A Xylose isomerase domain 29.0 1.6E+02 0.0054 28.7 8.5 52 295-350 48-100 (281)
91 3kru_A NADH:flavin oxidoreduct 28.9 2.7E+02 0.0091 29.3 10.6 50 255-321 203-252 (343)
92 2yci_X 5-methyltetrahydrofolat 28.0 4.8E+02 0.017 26.3 13.3 82 174-266 67-167 (271)
93 3m1r_A Formimidoylglutamase; s 28.0 4.1E+02 0.014 27.4 11.8 111 199-318 172-289 (322)
94 2vef_A Dihydropteroate synthas 26.5 2.4E+02 0.0083 29.3 9.6 38 189-231 88-127 (314)
95 1a0c_A Xylose isomerase; ketol 25.9 6.6E+02 0.022 27.2 16.7 229 107-395 84-364 (438)
96 2ftp_A Hydroxymethylglutaryl-C 25.5 5.4E+02 0.019 26.1 14.9 95 222-335 85-196 (302)
97 3aal_A Probable endonuclease 4 25.2 3E+02 0.01 27.3 10.0 97 291-409 50-151 (303)
98 1r85_A Endo-1,4-beta-xylanase; 25.1 79 0.0027 33.9 5.7 58 293-358 211-271 (379)
99 1aj0_A DHPS, dihydropteroate s 25.1 5.2E+02 0.018 26.3 11.7 105 175-305 80-206 (282)
100 3qxb_A Putative xylose isomera 24.9 1.2E+02 0.0042 30.6 6.9 54 295-350 71-130 (316)
101 3q94_A Fructose-bisphosphate a 23.6 6.1E+02 0.021 26.0 13.7 134 222-411 9-144 (288)
102 3eeg_A 2-isopropylmalate synth 23.2 6.3E+02 0.022 26.1 14.3 71 234-322 133-210 (325)
103 2q02_A Putative cytoplasmic pr 22.6 5.1E+02 0.018 24.8 12.5 90 295-410 52-142 (272)
104 1eye_A DHPS 1, dihydropteroate 22.4 6.3E+02 0.021 25.7 13.0 104 176-305 72-198 (280)
105 1rvg_A Fructose-1,6-bisphospha 22.3 6.3E+02 0.022 26.1 11.7 131 223-411 6-136 (305)
106 3tsm_A IGPS, indole-3-glycerol 21.7 1.9E+02 0.0065 29.5 7.5 105 195-330 131-236 (272)
107 1tx2_A DHPS, dihydropteroate s 21.4 6.7E+02 0.023 25.7 12.7 104 176-305 106-225 (297)
108 1w32_A Endo-1,4-beta-xylanase 21.2 1E+02 0.0034 32.6 5.5 57 294-358 192-253 (348)
109 1ur1_A Endoxylanase; hydrolase 21.1 83 0.0028 33.7 4.8 57 293-357 208-267 (378)
110 2cw6_A Hydroxymethylglutaryl-C 21.1 6.5E+02 0.022 25.4 13.8 143 171-337 27-195 (298)
111 3emz_A Xylanase, endo-1,4-beta 20.7 76 0.0026 33.4 4.4 57 294-358 187-246 (331)
112 2fiq_A Putative tagatose 6-pho 20.1 3.5E+02 0.012 29.5 9.5 119 224-354 3-124 (420)
No 1
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=8.3e-121 Score=1050.31 Aligned_cols=573 Identities=35% Similarity=0.637 Sum_probs=508.1
Q ss_pred CCCCHHhhhhhhcCCCCCCCCceeCCCccEEEecCCCCcCCcCCcCHHHHHHHhCCCCCCCCCCCCCcEEEEcHHHHHHH
Q 005135 62 SHWSPSHSASLYKIDSWGAPYFAVNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPKSVGGLGLQLPLIVRLPDVLRDR 141 (712)
Q Consensus 62 ~~w~~~~~~~ly~i~~wg~~yf~i~~~G~l~v~p~~~~~l~~~~i~l~el~~~~~~~~~~~~~g~~tPl~V~d~d~L~~n 141 (712)
++||+++|++||+|++||+|||+||++|||+|.|.+. +..+|+|.+|+++++++ +++||+||+|++.|++|
T Consensus 7 ~~w~~~~~~~~y~i~~Wg~~yf~in~~G~l~v~~~~~---~~~~v~l~eLa~~l~~~------~~gTPlyV~D~d~L~~n 77 (648)
T 3n2o_A 7 QTSKLDRVRADYNVHYWSQGFYGIDDQGEMYVSPRSD---NAHQIQLSKIVKQLEER------QLNVPVLVRFPQILHQR 77 (648)
T ss_dssp ---CHHHHHHHHCTHHHHTTSEEECTTSCEEECCSTT---CCCCEEHHHHHHHHHHT------TCCSSEEEECHHHHHHH
T ss_pred CCCCHHHHHHHcCCCCCCcccccCCCCCcEEEeCCCC---CCCccCHHHHHHHHhhc------CCCCCEEEEeHHHHHHH
Confidence 4699999999999999999999999999999998542 46789999999877766 69999999999999999
Q ss_pred HHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCC---ccceEecCHHHHHHHHHhcCCCCCCcEEEeC
Q 005135 142 LESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQF---RFGLEAGSKPELLLAMSCLCKGSPEALLVCN 218 (712)
Q Consensus 142 i~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~---~~GlEvaS~~EL~~Al~~G~~~~p~~II~~n 218 (712)
+++|+++|++++.+++|.++++++||+|||+++.|++.+.+.|+.| ++|+||+|++|+++|+++|+ +|+++|++|
T Consensus 78 i~~l~~af~~a~~~~~y~~~~~i~YAvKAN~~~~Vl~~l~~~G~~~~~~g~GlDvaS~gEL~~al~aG~--~~e~iIv~n 155 (648)
T 3n2o_A 78 VHSICDAFNQAIEEYQYPNKYLLVYPIKVNQQREVVDEILASQAQLETKQLGLEAGSKPELLAVLAMAQ--HASSVIVCN 155 (648)
T ss_dssp HHHHHHHHHHHHHHHTCSSCEEECEEGGGCCCHHHHHHHHHHHHHSTTCCCEEEECSHHHHHHHHHHTS--SSCCEEEEC
T ss_pred HHHHHHHHHHHHHhhcccCCeEEEEEEeecCcHHHHHHHHHhCCccccCCceEEecCHHHHHHHHHcCC--CCCcEEEec
Confidence 9999999999988999999999999999999999999999997544 47999999999999999995 777888899
Q ss_pred CCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHH
Q 005135 219 GFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILR 298 (712)
Q Consensus 219 g~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~ 298 (712)
|+|++++|++|+.+.+.|++++|+|||++||++|.+++++.+++++|+|||||+..++++|+.||+..||||++++++.+
T Consensus 156 G~K~~eeI~~Al~~~~~G~~v~IvVDS~~EL~~I~~~A~~~g~~~~V~LRInp~~~~~~~~i~TGg~~SKFGi~~~e~~~ 235 (648)
T 3n2o_A 156 GYKDREYIRLALIGEKLGHKVFIVLEKMSELDLVLREAKSLGVTPRLGIRIRLASQGAGKWQASGGEKSKFGLSASQVLN 235 (648)
T ss_dssp SCCCHHHHHHHHHHHHTTCEEEEEECSTHHHHHHHHHHHHHTCCCEEEEEBCCSTTSTTTTCSSSSCCCCCCBCHHHHHH
T ss_pred CCCCHHHHHHHHHhhcCCCCEEEEECCHHHHHHHHHHHHhcCCCcEEEEEEECCCCCCCCccccCCCCCcCcCCHHHHHH
Confidence 99999999999986668888889999999999999999999999999999999988788999999999999999999999
Q ss_pred HHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCCCCCCCCCCcCCC
Q 005135 299 VVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYT 378 (712)
Q Consensus 299 ~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s~~~~~~~s~~ys 378 (712)
+++++++.+++++++|||||+|||+.+++.++++++++.+++.++++.|+++++|||||||||+|.++++. ++.|++|+
T Consensus 236 ll~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~al~~~~~l~~~L~~~G~~l~~LDiGGGfgI~Y~~~~~~-~~~s~~~~ 314 (648)
T 3n2o_A 236 VISRLKKENQLDTLQLVHFHLGSQMANIRDVRNGVNESARFYCELRTLGANITYFDVGGGLAIDYDGTRSQ-SSNSMNYG 314 (648)
T ss_dssp HHHHHHHTTCGGGEEEEECCCCSSBCCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCSCBCCCTTSCCCS-STTSCSCC
T ss_pred HHHHHHhCCCCCceEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEeCCCcCCCcCCcccc-ccccCCCC
Confidence 99999999998669999999999999999999999999999999999999999999999999999877653 36778899
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCeEEecCcchhccccceEEEEEEEEEecCCCCCCC----CcchhhHhh---hch---
Q 005135 379 LEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEAVSASVSRAAPVAM----SPLGLQYLV---EGL--- 448 (712)
Q Consensus 379 leeya~~Iv~~l~~~~~~~gv~~p~Li~EPGRalvA~agvLVt~Vi~vk~~~~~~~~~----~~~~~~~lv---dg~--- 448 (712)
+++|++.|+.+++++|++.++++|+|++||||||||+||+||++|+++|......+.. .+...+.++ +.+
T Consensus 315 leeya~~I~~~l~~~~~~~~~~~p~Ii~EPGR~iVa~aGvLvt~Vi~vK~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 394 (648)
T 3n2o_A 315 LVEYARNIVNTVGDVCKDYKQPMPVIISESGRSLTAHHAVLISNVIGTETYKPETVTEPEEDFPLLLNNMWRSWLNLHNG 394 (648)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCEEEECCHHHHHGGGEEEEEEEEEEECCCCCCCCCCCTTCCHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcEEEEecCHHHHHhhheEEEEEEEEEecCCCCCCCCcccccHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999865422211 111122222 222
Q ss_pred -h-hhHHHHH-------HHHHHHHHhh------------------hhc----cC-C------------CCcccccccccc
Q 005135 449 -T-EDARSDY-------TKMTTAALRA------------------MEI----GA-S------------DPVRTYHVNLSI 484 (712)
Q Consensus 449 -~-~~~~~~y-------~~~~~~~~~g------------------~~~----~~-~------------~~~~~Y~~N~Sv 484 (712)
+ .+++|+| +++...|.+| +++ .- . .++++||||||+
T Consensus 395 ~~~~~~~e~~~da~~~~~~~~~~f~~g~~~l~~ra~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~y~~n~S~ 474 (648)
T 3n2o_A 395 TDARALIEIYNDTQSDLAEVHSQFATGVLTLEHRAWAEQTSLRIYYELNRLMSTKNRFHRPILDELSERLADKFFVNFSL 474 (648)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHSCTTSTTHHHHHHHHHHHTCEEEEESSCH
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhhccccCcHHHHHHHHHHhHHheeehhh
Confidence 2 3556777 4455566666 111 10 1 156889999999
Q ss_pred ccccchhhhcCCcceeeecCCCCCCCCeeeEeecccccCCCccccccCC---CcccCCccccCCCCCCCcccEEEeeccc
Q 005135 485 FTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGG 561 (712)
Q Consensus 485 f~SlpD~w~i~q~fPI~pl~rl~e~p~~~~~l~G~TCdS~D~I~~fi~~---~~~LPl~~l~~G~~~~~~~d~L~~~~~G 561 (712)
||||||+|+|+|+||||||||++|+|+++++|+|+||||||+|++|++. ..+||||+++. +|+||||||++|
T Consensus 475 fqslpD~W~i~q~fpi~Pi~rl~e~p~~~~~l~diTCDsdG~i~~f~~~~~~~~~l~lh~~~~-----~e~y~lg~fl~G 549 (648)
T 3n2o_A 475 FQSLPDSWGIDQVFPVLPLSGLQNAADRRAVMLDITCDSDGAIDAYVDGQGIESTLPVPAWNE-----DEPYLMGFFLVG 549 (648)
T ss_dssp HHHCHHHHHHCCCCCEEESSCGGGTTSEEEEEEESSSCTTCBCCCEEETTEEESSEEECCCCT-----TSCCEEEEESCC
T ss_pred hccCcchhhhcCccceeeccccCCCcceeeEEeccccCCCCchhhccCCCCCccceecCcCCC-----CCccEEEEEecc
Confidence 9999999999999999999999999999999999999999999999976 37999999987 689999999999
Q ss_pred chhccccCCCCCCCCCcEEEEEecCCCCeEEEEEcCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 005135 562 AYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYCGQEHGSNGGDGDT 641 (712)
Q Consensus 562 AYq~~m~s~fNlf~~p~~V~V~~~d~~g~~~i~r~~~g~t~~dvl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (712)
|||++||++|||||+|++|+|.. +++|+|.+.+.++|+|++|||++|+|+|+.|+++||+++++++..
T Consensus 550 AYQe~lg~~HnLfg~~~~v~v~~-~~~g~~~~~~~~~g~t~~~~l~~~~y~~~~~~~~~~~~~~~~~~~----------- 617 (648)
T 3n2o_A 550 AYQEILGDMHNLFGDTHSVVVNV-GDQGEINIDFINEGDTVEDMMRYVHIDVDQIRKNYHSLVSQRVDQ----------- 617 (648)
T ss_dssp SSHHHHCCCGGGCCCCEEEEEEE-CTTSCEEEEEEECCCBHHHHHHHTTCCHHHHHHHHHHHHHHHSCH-----------
T ss_pred hhhHHhccccccCCCCCEEEEEE-cCCCCEEEEEeecCCCHHHHHHhcCCCHHHHHHHHHHHHHhcCCH-----------
Confidence 99999999999999999999994 666889999999999999999999999999999999999986332
Q ss_pred CccccccccHHHHHHHHHHhccCCCcccC
Q 005135 642 DDYDHGMANNSALASSLAQYFHSMPYLVV 670 (712)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~l~~~tyl~~ 670 (712)
+ |+ +++++.|+++|+|||||+.
T Consensus 618 --~----~~-~~~~~~~~~~l~~~tyl~~ 639 (648)
T 3n2o_A 618 --E----EQ-QQILAELEQGLSGYTYLED 639 (648)
T ss_dssp --H----HH-HHHHHHHHHHHHSBSSCCC
T ss_pred --H----HH-HHHHHHHHHHccCCCChhH
Confidence 3 34 8999999999999999997
No 2
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; 3.10A {Escherichia coli}
Probab=100.00 E-value=3.4e-118 Score=1031.29 Aligned_cols=573 Identities=36% Similarity=0.644 Sum_probs=502.3
Q ss_pred CCCHHhhhhhhcCCCCCCCCceeCCCccEEEecCCCCcCCcCCcCHHHHHHHhCCCCCCCCCCCCCcEEEEcHHHHHHHH
Q 005135 63 HWSPSHSASLYKIDSWGAPYFAVNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPKSVGGLGLQLPLIVRLPDVLRDRL 142 (712)
Q Consensus 63 ~w~~~~~~~ly~i~~wg~~yf~i~~~G~l~v~p~~~~~l~~~~i~l~el~~~~~~~~~~~~~g~~tPl~V~d~d~L~~ni 142 (712)
+||+++|++||+|++||.+||.||++|+|+|.|.+.. +..+|+|.+|+++++++ +++||+||+|++.|++|+
T Consensus 29 ~w~~~~~~~ly~i~~W~~~~f~in~~G~l~v~g~~~~--~~~~v~l~eLa~~l~~~------~~gTPlyV~D~d~Lr~ni 100 (666)
T 3nzq_A 29 SQEASKMLRTYNIAWWGNNYYDVNELGHISVCPDPDV--PEARVDLAQLVKTREAQ------GQRLPALFCFPQILQHRL 100 (666)
T ss_dssp -----CTTTTTTHHHHTTTTEEECTTSSEEECSCTTS--TTCCEEHHHHHHHHHHT------TCCSSEEEECHHHHHHHH
T ss_pred CCCHHHHHHHcCcCCCCCccccCCCCCeEEEeCCCCC--CCCCcCHHHHHHHHHhc------cCCCCEEEeCHHHHHHHH
Confidence 6999999999999999999999999999999985321 46789999999976665 699999999999999999
Q ss_pred HHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHhcCCCCCCcEEEeCCCCC
Q 005135 143 ESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKD 222 (712)
Q Consensus 143 ~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng~K~ 222 (712)
++|+++|++++.+++|.++++++||+|||+++.|++.+.+.|++ +|+||+|++|+.+|+++|+ +|+++|++||+|+
T Consensus 101 ~~l~~af~~a~~~~~Y~~~~~i~YAvKAN~~~~Vl~~l~~~G~~--~G~dvaS~gEl~~al~aG~--~p~~iIv~nG~K~ 176 (666)
T 3nzq_A 101 RSINAAFKRARESYGYNGDYFLVYPIKVNQHRRVIESLIHSGEP--LGLEAGSKAELMAVLAHAG--MTRSVIVCNGYKD 176 (666)
T ss_dssp HHHHHHHHHHHHHHTCCSCEEEEEEGGGCCCHHHHHHHHTSSSC--EEEEESSHHHHHHHHHHHT--TSCCEEEECSCCC
T ss_pred HHHHHHHHHhHHhhcccCCeEEEEEEeeCChHHHHHHHHHcCCC--ceEEEeCHHHHHHHHHcCC--CCCcEEEEcCCCC
Confidence 99999999999999999999999999999999999999999953 5999999999999999995 7767888999999
Q ss_pred HHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHH
Q 005135 223 AGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKK 302 (712)
Q Consensus 223 ~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~ 302 (712)
+++|++|+.+.++|++++|+|||++||++|.+++++.+++++|+|||||...++++|+.||+..||||++++++.+++++
T Consensus 177 ~eeI~~Al~~~~~G~~v~ivVDS~~ELe~L~~~A~~~g~~~~V~LRVnp~~~~~~~~i~TG~~~SKFGi~~~e~~~ll~~ 256 (666)
T 3nzq_A 177 REYIRLALIGEKMGHKVYLVIEKMSEIAIVLDEAERLNVVPRLGVRARLASQGSGKWQSSGGEKSKFGLAATQVLQLVET 256 (666)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHTTCCCCEEEEBCCSSSCSSTTCSSSSSCCCSCBCHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCEEEEECCHHHHHHHHHHHHHcCCCceEEEEEEecCCCCcCccccCCCCCcCcCCHHHHHHHHHH
Confidence 99999999866678888899999999999999999999999999999999888889999999999999999999999999
Q ss_pred HHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCCCCCCCCCCcCCCHHHH
Q 005135 303 LEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEEY 382 (712)
Q Consensus 303 l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s~~~~~~~s~~ysleey 382 (712)
+++.++++++.|||||+|||+.+++.++++++++.+++.++++.|+++++|||||||||+|.++++. .+.|.+|++++|
T Consensus 257 l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~l~~~L~~~G~~l~~LDiGGGfgI~Y~~~~~~-~~~s~~~~leey 335 (666)
T 3nzq_A 257 LREAGRLDSLQLLHFHLGSQMANIRDIATGVRESARFYVELHKLGVNIQCFDVGGGLGVDYEGTRSQ-SDCSVNYGLNEY 335 (666)
T ss_dssp HHHTTCTTTEEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCCCCEEECCSCCCCCSSSSCSS-STTCCSSCHHHH
T ss_pred HHhCCCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCEEEeCCCcCCCcCCcccc-ccccCCCCHHHH
Confidence 9999998768999999999999999999999999999999999999999999999999999876643 356778999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEecCcchhccccceEEEEEEEEEecCCCCCCC----CcchhhHhh---hchh-----h
Q 005135 383 ASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEAVSASVSRAAPVAM----SPLGLQYLV---EGLT-----E 450 (712)
Q Consensus 383 a~~Iv~~l~~~~~~~gv~~p~Li~EPGRalvA~agvLVt~Vi~vk~~~~~~~~~----~~~~~~~lv---dg~~-----~ 450 (712)
++.|+.+++++|++.++++|+|++||||||||+||+||++|+++|......+.. .+...+.++ +.++ .
T Consensus 336 a~~I~~~l~~~~~~~~~~~p~Ii~EPGRaiVa~aGvLvt~Vi~vK~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 415 (666)
T 3nzq_A 336 ANNIIWAIGDACEENGLPHPTVITESGRAVTAHHTVLVSNIIGVERNEYTVPTAPAEDAPRALQSMWETWQEMHEPGTRR 415 (666)
T ss_dssp HHHHHHHHHHHHHHHTCCCCEEEECCHHHHHTTSEEEEEEEEEEECCCCCCCCCCCTTSCHHHHHHHHHHHHHSSSSCST
T ss_pred HHHHHHHHHHHHHHcCCCCcEEEEecCHHHHHhhhEEEEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHhhccccccc
Confidence 999999999999999999999999999999999999999999999865422211 111122222 2222 3
Q ss_pred hHHHHH-------HHHHHHHHhh------------------hhc----c-C------------CCCcccccccccccccc
Q 005135 451 DARSDY-------TKMTTAALRA------------------MEI----G-A------------SDPVRTYHVNLSIFTSI 488 (712)
Q Consensus 451 ~~~~~y-------~~~~~~~~~g------------------~~~----~-~------------~~~~~~Y~~N~Svf~Sl 488 (712)
+++|+| +++...|.+| +++ . . ..++++||||||+||||
T Consensus 416 ~~~e~~~da~~~~~~~~~~f~~g~~~l~~ra~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~y~~n~S~fqsl 495 (666)
T 3nzq_A 416 SLREWLHDSQMDLHDIHIGYSSGIFSLQERAWAEQLYLSMCHEVQKQLDPQNRAHRPIIDELQERMADKMYVNFSLFQSM 495 (666)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHCCTTSGGGHHHHHHHHHTTCEEEEESSCHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHhHHheeehhhhccC
Confidence 455666 3445556655 111 1 0 12568999999999999
Q ss_pred chhhhcCCcceeeecCCCCCCCCeeeEeecccccCCCccccccCC---CcccCCccccCCCCCCCcccEEEeecccchhc
Q 005135 489 PDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGG---GTSLPLHEMVGGGCGERGPYYLGMFLGGAYEE 565 (712)
Q Consensus 489 pD~w~i~q~fPI~pl~rl~e~p~~~~~l~G~TCdS~D~I~~fi~~---~~~LPl~~l~~G~~~~~~~d~L~~~~~GAYq~ 565 (712)
||+|+|+|+||||||||++|+|+++++|+|+||||||+|++|++. ..+||||+++. +|+||||||++||||+
T Consensus 496 PD~W~i~q~fpi~Pi~rl~e~p~~~~~l~diTCDsdG~i~~fi~~~~~~~~l~lh~~~~-----~e~y~lg~Fl~GAYQe 570 (666)
T 3nzq_A 496 PDAWGIDQLFPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPEYDP-----ENPPMLGFFMVGAYQE 570 (666)
T ss_dssp THHHHSCCCCCEEESSCTTSCCCEEEEEEESCSSTTCBCCCEEETTEEESSEEECSCCT-----TSCCEEEECSCCSSCG
T ss_pred cchhhhccccceeeccccCCCcceeeEEeccccCCCCchhhccCCCCccccccccccCC-----CCccEEEEEecchhhH
Confidence 999999999999999999999999999999999999999999986 37999999987 6899999999999999
Q ss_pred cccCCCCCCCCCcEEEEEecCCCCeEEEEEcCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHhccCCCCCCCCCCCCccc
Q 005135 566 ALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYCGQEHGSNGGDGDTDDYD 645 (712)
Q Consensus 566 ~m~s~fNlf~~p~~V~V~~~d~~g~~~i~r~~~g~t~~dvl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 645 (712)
+||++|||||+|++|+|.. +++|+|.+.+.++|+|++|||++|+|+|+.|+++||++++++ +| ++ +
T Consensus 571 ~lg~~HnLfg~~~~v~v~~-~~~g~~~~~~~~~g~t~~~vl~~~~y~~~~l~~~~~~~~~~~-----~~------~~-~- 636 (666)
T 3nzq_A 571 ILGNMHNLFGDTEAVDVFV-FPDGSVEVELSDEGDTVADMLQYVQLDPKTLLTQFRDQVKKT-----DL------DA-E- 636 (666)
T ss_dssp GGCCCTTSCCCCEEEEEEE-CTTSCEEEEEEECCCBHHHHHHHTTCCHHHHHHHHHHHTGGG-----CS------CH-H-
T ss_pred HhccccccCCCCCEEEEEE-cCCCCEEEEEeecCCCHHHHHHhcCCCHHHHHHHHHHHHHhC-----CC------CH-H-
Confidence 9999999999999999994 666889999999999999999999999999999999999875 23 12 2
Q ss_pred cccccHHHHHHHHHHhccCCCcccCC
Q 005135 646 HGMANNSALASSLAQYFHSMPYLVVP 671 (712)
Q Consensus 646 ~~~~~~~~~~~~~~~~l~~~tyl~~~ 671 (712)
|+ +++++.|+++|+|||||+..
T Consensus 637 ---~~-~~~~~~~~~~l~~~tyl~~~ 658 (666)
T 3nzq_A 637 ---LQ-QQFLEEFEAGLYGYTYLEDE 658 (666)
T ss_dssp ---HH-HHHHHHHHHHHSSBSSCCCC
T ss_pred ---HH-HHHHHHHHHHccCCCCcchh
Confidence 34 89999999999999999973
No 3
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; HET: PLP; 3.00A {Campylobacter jejuni subsp}
Probab=100.00 E-value=2e-113 Score=986.65 Aligned_cols=556 Identities=32% Similarity=0.569 Sum_probs=476.2
Q ss_pred hhcCCCCCCCCceeCCCccEEEecCCCCcCCcCCcCHHHHHHHhCCCCCCCCCCCCCcEEEEcHHHHHHHHHHHHHHHHH
Q 005135 72 LYKIDSWGAPYFAVNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPKSVGGLGLQLPLIVRLPDVLRDRLESLHSAFEF 151 (712)
Q Consensus 72 ly~i~~wg~~yf~i~~~G~l~v~p~~~~~l~~~~i~l~el~~~~~~~~~~~~~g~~tPl~V~d~d~L~~ni~~l~~af~~ 151 (712)
-|+|++||.+||+|| +|+|+|+|. .+++|.+|+++++++ +++||+||+|++.|++|+++|+++|++
T Consensus 3 ~y~i~~w~~~~f~~~-~G~l~v~~~-------~~v~l~~l~~~l~~~------~~gTP~yV~D~d~L~~ni~~l~~af~~ 68 (619)
T 3nzp_A 3 DYGIDIWGNENFIIK-NGKVCINYE-------KKPAIIDIVKELRDD------GYKGPLLLRFPHLIQKQIENIYGNFNK 68 (619)
T ss_dssp CTTTTTTSGGGEEEC-SSSEEESSS-------SCCBHHHHHHHHHHT------TCCSCEEEECHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCceEEe-CCEEEEecC-------CCCCHHHHHHHHHhc------CCCCCEEEEcHHHHHHHHHHHHHHHHH
Confidence 499999999999999 999999862 258999999998888 799999999999999999999999999
Q ss_pred hHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHH
Q 005135 152 AIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALL 231 (712)
Q Consensus 152 a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng~K~~e~I~~Al~ 231 (712)
++++++|.++++++||+|||+++.|++.+.+.|+.+++|+||+|++|+.+|+++|+ ++. +|++||+|++++|++|+.
T Consensus 69 a~~~~~y~g~~~i~YAVKAN~~~~Vl~~L~~~Ga~~g~G~dvaS~~El~~al~aG~--~~~-~Iv~nG~K~~e~I~~Al~ 145 (619)
T 3nzp_A 69 ARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGKDYNYGLEAGSKAELLLAMAYNN--EGA-PITVNGFKDRELINIGFI 145 (619)
T ss_dssp HHHHTTCCSCEEEEEEGGGCCCHHHHHHHHHHTGGGTCEEEECSHHHHHHHHHHSC--TTS-EEEECSCCCHHHHHHHHH
T ss_pred HhhhcccCCCEEEEEEEeccCcHHHHHHHHHhCCCCCceEEEeCHHHHHHHHhcCC--CCC-EEEeCCCCCHHHHHHHHh
Confidence 99999999999999999999999999999999987778999999999999999994 544 567889999999999986
Q ss_pred hccCCCcEEEEECCHHHHHHHHHHHHhcC-CCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCC
Q 005135 232 ARKLDLNVVIVLEQEEEVDLVIEISKKLN-VRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLD 310 (712)
Q Consensus 232 ~~~~G~~v~IvVDs~~EL~~I~~~a~~~g-~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~ 310 (712)
++++|++++|+|||++||++|.+++++.| ++++|+|||||...++|+|.+||+..||||++++++.++++++++.++++
T Consensus 146 a~~~g~~v~ivVDS~~ELe~l~~~a~~~g~~~~~V~LRInp~~~g~~~~~~TGg~~sKFGi~~ee~~~ll~~l~~~~~L~ 225 (619)
T 3nzp_A 146 AAEMGHNITLTIEGLNELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLLKENKLLE 225 (619)
T ss_dssp HHHTTCEEEEEESSHHHHHHHHHHHTTSCSCCCEEEEEBCCTTC-------------CCSBCHHHHHHHHHHHHHTTCTT
T ss_pred hhhcCCcEEEEECCHHHHHHHHHHHHHcCCCCCEEEEEEecCCCCCcccccCCCCCccCcCCHHHHHHHHHHHHhCCCCC
Confidence 66678888899999999999999999998 89999999999877788999999999999999999999999999999884
Q ss_pred ceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCC-CCcEEEEcCCCCcCcCCCCCCCCCCCcCCCHHHHHHHHHHH
Q 005135 311 CFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGA-NMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEEYASAVVQA 389 (712)
Q Consensus 311 ~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~-~l~~IDIGGGlgv~Y~~s~~~~~~~s~~ysleeya~~Iv~~ 389 (712)
+++|||||+|||+.+++.++++++++.+++.++++.|+ ++++|||||||||+|.++++ .+|.+|++++|++.|+.+
T Consensus 226 ~l~GLHfHiGSqi~d~~~~~~al~~~~~l~~~L~~~G~~~l~~LDiGGG~gI~Y~~~~~---~~s~~~~l~eya~~I~~~ 302 (619)
T 3nzp_A 226 QFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLAVEYSQFKN---EKSRNYTLREYANDVVFI 302 (619)
T ss_dssp TEEEEECCCCSCBCCSHHHHHHHHHHHHHHHHHHHTTCTTCCEEEEESCBCCCCCCSSS---CCSCSSCHHHHHHHHHHH
T ss_pred ceeEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEeCCCcCCCCCCCcc---cccCCCCHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999 99999999999999987653 345689999999999999
Q ss_pred HHHHHHhcCCCCCeEEecCcchhccccceEEEEEEEEEecCCCC-CCC----CcchhhHhh---hchh-hhHHHHH----
Q 005135 390 IRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEAVSASVSRAAP-VAM----SPLGLQYLV---EGLT-EDARSDY---- 456 (712)
Q Consensus 390 l~~~~~~~gv~~p~Li~EPGRalvA~agvLVt~Vi~vk~~~~~~-~~~----~~~~~~~lv---dg~~-~~~~~~y---- 456 (712)
++++|++.++++|+|++||||||||+||+||++|+++|+.+... +.. .+...+.++ +.++ .+++|+|
T Consensus 303 l~~~~~~~~~~~p~Ii~EPGR~iva~aGvLvt~Vi~vk~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~d~~ 382 (619)
T 3nzp_A 303 LKNIAEQKKDLEPDIFIESGRFVAANHAVLIAPVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSI 382 (619)
T ss_dssp HHHHHHHTTCCCCEEEECCCHHHHGGGEEEEEEEEEEECCCCCGGGSCCCSSCCHHHHHHHHHHHHCCTTTHHHHHHHHH
T ss_pred HHHHHHhcCCCCCEEEEeccHHHHHhhhhEEEEEEEEecCCCcccccCCCccccHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999865421 111 111122222 1222 2445666
Q ss_pred ---HHHHHHHHhh------------------hhc----c----CC-------CCccccccccccccccchhhhcCCccee
Q 005135 457 ---TKMTTAALRA------------------MEI----G----AS-------DPVRTYHVNLSIFTSIPDYWAIGQLFPI 500 (712)
Q Consensus 457 ---~~~~~~~~~g------------------~~~----~----~~-------~~~~~Y~~N~Svf~SlpD~w~i~q~fPI 500 (712)
+++...|.+| +++ . .. .++++||||||+||||||+|+|+|+|||
T Consensus 383 ~~~~~~~~~f~~g~~~l~~ra~~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~~n~S~fqslpD~W~i~q~fpi 462 (619)
T 3nzp_A 383 DHLESILTLFDLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSMPDFWGLEQNFPI 462 (619)
T ss_dssp HHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCC-------------CCSBEEEESSCTTTTCHHHHHSSCCCCE
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHhhHHheeeehhhccCcchhhcCcccce
Confidence 3344455555 111 0 01 2478999999999999999999999999
Q ss_pred eecCCCCCCCCeeeEeecccccCCCccccccCCCcccCCccccCCCCCCCcccEEEeecccchhccccCCCCCCCCCcEE
Q 005135 501 VPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVV 580 (712)
Q Consensus 501 ~pl~rl~e~p~~~~~l~G~TCdS~D~I~~fi~~~~~LPl~~l~~G~~~~~~~d~L~~~~~GAYq~~m~s~fNlf~~p~~V 580 (712)
|||||++++|+++++|+|+||||||+|+ | +.+.+||||+++.. +|+||||||++||||++||++|||||+|++|
T Consensus 463 ~Pi~rl~e~p~~~~~l~diTCDsdg~i~-~-~~~~~l~lh~~~~~----~~~y~lg~fl~GAYQe~lg~~HnLfg~~~~v 536 (619)
T 3nzp_A 463 MPLDRLDEEPTRSASIWDITCDSDGEIS-Y-SKDKPLFLHDVDVE----KENYFLGFFLVGAYQEVLGMKHNLFTHPTEA 536 (619)
T ss_dssp EESSCTTSCCCCBBCCEESCSCTTSBCC-C-CSSSCCBCCCCCTT----TSCCEEEECSCSSSTTTTCCCTTSCCCCEEE
T ss_pred eeccccCCCcceeeEEecccccCCCccc-c-CCcccccCCCCCCC----CCCcEEEEEccchHHHHHhhccccCCCCCEE
Confidence 9999999999999999999999999999 8 66789999999832 6889999999999999999999999999999
Q ss_pred EEEecCCCCeEEEEEcCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHhccCCCCCCCCCCCCccccccccHHHHHHHHHH
Q 005135 581 RVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMFETLKHRAEEYCGQEHGSNGGDGDTDDYDHGMANNSALASSLAQ 660 (712)
Q Consensus 581 ~V~~~d~~g~~~i~r~~~g~t~~dvl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (712)
+|.. +++| |.+.+.++|+|++|||++|+|+|+.|+++||++++++ ++| ++ + |+ +++++.|++
T Consensus 537 ~v~~-~~~g-~~~~~~~~g~~~~~~l~~~~y~~~~~~~~~~~~~~~~----~~~------~~-~----~~-~~~~~~~~~ 598 (619)
T 3nzp_A 537 IISI-NEKG-YEVEGIIEAQSILDTLEDLDYDIHAIMDILNERISNS----KLV------ND-K----QK-KHILGELYL 598 (619)
T ss_dssp EEEE-CSSC-EEEEEEECCCCHHHHHHHTTCCHHHHHHHHHHHHHSC----SSS------CH-H----HH-HHHHHHHHH
T ss_pred EEEE-cCCc-eEEEEeecCCCHHHHHHhcCCCHHHHHHHHHHHHHhc----CCC------CH-H----HH-HHHHHHHHH
Confidence 9994 5555 9999999999999999999999999999999999886 233 22 2 34 899999999
Q ss_pred hccCCCcccCC
Q 005135 661 YFHSMPYLVVP 671 (712)
Q Consensus 661 ~l~~~tyl~~~ 671 (712)
+|+|||||+..
T Consensus 599 ~l~~~tyl~~~ 609 (619)
T 3nzp_A 599 FLNDNGYLKSI 609 (619)
T ss_dssp HHTSCSSCCCC
T ss_pred HccCCCCcCcc
Confidence 99999999973
No 4
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV}
Probab=100.00 E-value=4.2e-69 Score=601.51 Aligned_cols=415 Identities=20% Similarity=0.277 Sum_probs=351.4
Q ss_pred CceeCCCccEEEecCCCCcCCcCCcCHHHHHHHhCCCCCCCCCCCCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCc
Q 005135 82 YFAVNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPKSVGGLGLQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEAR 161 (712)
Q Consensus 82 yf~i~~~G~l~v~p~~~~~l~~~~i~l~el~~~~~~~~~~~~~g~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~ 161 (712)
+|+. .+|+|.+ ++++|.+|+++ ++||+||+|++.|++|+++|+++|+. .+
T Consensus 25 ~~~~-~~~~l~~----------~~~~l~~la~~-----------~~tP~~vid~~~l~~n~~~l~~~~~~--------~~ 74 (443)
T 3vab_A 25 HFEY-RNGVLHA----------ENVSLPEIAKA-----------VGTPFYVYSRATIERHFRVFHDAFAD--------MD 74 (443)
T ss_dssp SEEE-ETTEEEE----------TTEEHHHHHHH-----------HCSSEEEEEHHHHHHHHHHHHHHTTT--------SC
T ss_pred ccee-eCCEEEE----------CCeeHHHHHhh-----------cCCCEEEEEHHHHHHHHHHHHHhhcc--------CC
Confidence 4665 4788877 46899999999 99999999999999999999999974 24
Q ss_pred ceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEE
Q 005135 162 YQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVI 241 (712)
Q Consensus 162 ~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~I 241 (712)
++++|++|||+++.|++.+.+.| +|+||+|.+|+.+++++|+ ++++|+|+++.|++++|+.|++ .|+. .+
T Consensus 75 ~~i~yavKAn~~~~v~~~l~~~G----~g~dvaS~~E~~~~~~~G~--~~~~I~~~g~~k~~~ei~~a~~---~gv~-~~ 144 (443)
T 3vab_A 75 TLVTYALKANSNQAVLTALAKLG----AGADTVSQGEIRRALAAGI--PANRIVFSGVGKTPREMDFALE---AGIY-CF 144 (443)
T ss_dssp EEEEEEGGGCCCHHHHHHHHHTT----CEEEESSHHHHHHHHHTTC--CGGGEEEECTTCCHHHHHHHHH---HTCS-EE
T ss_pred cEEEEEeccCCCHHHHHHHHHcC----CcEEEeCHHHHHHHHHcCC--ChhhEEEcCCCCCHHHHHHHHH---CCCC-EE
Confidence 79999999999999999999999 5999999999999999995 7788999999999999999997 3554 58
Q ss_pred EECCHHHHHHHHHHHHhcCCCceEEEEEeeCCC-CCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecC
Q 005135 242 VLEQEEEVDLVIEISKKLNVRPVIGARAKLRTK-HSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIG 320 (712)
Q Consensus 242 vVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~-~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiG 320 (712)
+|||++||++|.+++++.+++++|+||||++.. +++.|++||+..+|||++.+++.++++++++.+.++ +.|||||+|
T Consensus 145 ~vds~~el~~l~~~a~~~~~~~~V~lRVn~~~~~~~~~~i~tG~~~sRfGi~~~e~~~ll~~~~~~~~l~-l~Glh~H~g 223 (443)
T 3vab_A 145 NVESEPELEILSARAVAAGKVAPVSLRINPDVDAKTHAKISTGKSENKFGIPRDKARAAYARAASLPGLN-VVGIDMHIG 223 (443)
T ss_dssp EECCHHHHHHHHHHHHHHTCCEEEEEEEECCBCTTTCCBC---CCCCSSSEEGGGHHHHHHHHHHSTTEE-EEEEECCCC
T ss_pred EECCHHHHHHHHHHHHhcCCCceEEEEECCCCCCCCCcccccCCCCCCCcCCHHHHHHHHHHHhhCCCce-EEEEEEecc
Confidence 999999999999999998999999999999854 556788999999999999999999999999998888 999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCC
Q 005135 321 SQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVK 400 (712)
Q Consensus 321 Sqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~ 400 (712)
||+.+.+.++++++++.+++.++++.|+++++||||||||++|.+.++ ..+++++|++.|...+++ .+
T Consensus 224 s~~~d~~~~~~a~~~~~~l~~~l~~~G~~l~~ldiGGG~~i~y~~~~~------~~~~~~~~~~~i~~~~~~----~~-- 291 (443)
T 3vab_A 224 SQIIDLEPFDNAFALMAELVKELQADGHNIRHVDVGGGLGIPYRTPNT------PPPPPVAYAQIVAKHIKP----LG-- 291 (443)
T ss_dssp SSBCCSHHHHHHHHHHHHHHHHHHHTTCCCCEEECCCCBCCCCCCC---------CCCHHHHHHHHHHHHGG----GC--
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEeCCCcccCcCCCCC------CCCCHHHHHHHHHHHHHh----cC--
Confidence 999999999999999999999999999999999999999999976431 147999999998877764 33
Q ss_pred CCeEEecCcchhccccceEEEEEEEEEecCCCCCCCCcchhhHhhhchhhhHHHHHHHHHHHHHhhhhccCCCCcccccc
Q 005135 401 HPVLCSESGRAIVSHHSILIFEAVSASVSRAAPVAMSPLGLQYLVEGLTEDARSDYTKMTTAALRAMEIGASDPVRTYHV 480 (712)
Q Consensus 401 ~p~Li~EPGRalvA~agvLVt~Vi~vk~~~~~~~~~~~~~~~~lvdg~~~~~~~~y~~~~~~~~~g~~~~~~~~~~~Y~~ 480 (712)
++|++|||||||+++|+||++|+++|+..+..++ ++|+ +|+++.++
T Consensus 292 -~~l~~EPGR~lva~ag~lv~~V~~~K~~~~~~~~--------~vD~----------------------gm~~~~rp--- 337 (443)
T 3vab_A 292 -LKTVFEPGRLIVGNAGLLVTEVIFVKEGDAKNFV--------IVDA----------------------AMNDLIRP--- 337 (443)
T ss_dssp -SEEEECCSHHHHGGGEEEEEEEEEEEECSSCEEE--------EESC----------------------CTTTCCHH---
T ss_pred -CEEEEecCHHHhhcccEEEEEEEEEEecCCeeEE--------EEcc----------------------ccccccch---
Confidence 5999999999999999999999999986542222 3443 45444332
Q ss_pred ccccccccchhhhcCCcceeeecCCC-CCCCCeeeEeecccccCCCccccccCCCcccCCccccCCCCCCCcccEEEeec
Q 005135 481 NLSIFTSIPDYWAIGQLFPIVPIHHL-DERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFL 559 (712)
Q Consensus 481 N~Svf~SlpD~w~i~q~fPI~pl~rl-~e~p~~~~~l~G~TCdS~D~I~~fi~~~~~LPl~~l~~G~~~~~~~d~L~~~~ 559 (712)
++|++ | +++.|+++. .+.+...++|+||||+|.|+|.+ ++.|| ++++| |+|+|.+
T Consensus 338 --~ly~~----~-----~~~~~~~~~~~~~~~~~~~v~Gp~C~s~D~l~~----~~~lp--~l~~G-------D~l~~~~ 393 (443)
T 3vab_A 338 --TLYDA----F-----HDIRPVIMPNDNAPRIRADFVGPVCETGDYLGL----DREVA--KPAPG-------DLIAICT 393 (443)
T ss_dssp --HHHCC----C-----CCEEESBCCCTTSCEEEEEEECSSSSTTCEEEE----EEEEE--CCCTT-------CEEEEES
T ss_pred --HHhCc----c-----ceeEEcccCCCCCCceEEEEEccCCCCCCEEee----ccCcC--CCCCC-------CEEEEeC
Confidence 22222 2 245565542 23456789999999999999987 55676 79999 9999999
Q ss_pred ccchhccccCCCCCCCCCcEEEEEecCCCCeEEEEEcCCCCCHHHHHHhcCCCH
Q 005135 560 GGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEP 613 (712)
Q Consensus 560 ~GAYq~~m~s~fNlf~~p~~V~V~~~d~~g~~~i~r~~~g~t~~dvl~~~~~~~ 613 (712)
+|||+.+|+++||+|++|++|.|+ + |+++++| ++||++|+++....++
T Consensus 394 ~GAY~~~~ss~fN~~~~p~~v~v~--~--~~~~~ir--~ret~~dl~~~~~~~~ 441 (443)
T 3vab_A 394 TGAYGAVLSSTYNSRLLIPEVLGD--G--ERYHVVR--PRRTYEELLALDSVPD 441 (443)
T ss_dssp CTTTTGGGCCCGGGCCCCCEEEEE--T--TEEEEEE--CCCCHHHHHHTSCCCT
T ss_pred CCcCchhhhccccCCCCCcEEEEE--C--CeEEEEE--ecCCHHHHHhcccCcc
Confidence 999999999999999999999997 3 5799999 8999999999887543
No 5
>3n2b_A Diaminopimelate decarboxylase; LYSA, lyase, structural genom center for structural genomics of infectious diseases, CSGI; 1.80A {Vibrio cholerae}
Probab=100.00 E-value=5.7e-69 Score=600.16 Aligned_cols=423 Identities=21% Similarity=0.286 Sum_probs=351.4
Q ss_pred hhhcCCCCCCCCceeCCCccEEEecCCCCcCCcCCcCHHHHHHHhCCCCCCCCCCCCCcEEEEcHHHHHHHHHHHHHHHH
Q 005135 71 SLYKIDSWGAPYFAVNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPKSVGGLGLQLPLIVRLPDVLRDRLESLHSAFE 150 (712)
Q Consensus 71 ~ly~i~~wg~~yf~i~~~G~l~v~p~~~~~l~~~~i~l~el~~~~~~~~~~~~~g~~tPl~V~d~d~L~~ni~~l~~af~ 150 (712)
.||.-.+= -.+|++.++|+|.+ ++++|.+|+++ ++||+||+|++.|++|+++|+++|+
T Consensus 17 ~~~~~~~~-~~~~~~~~~~~l~~----------~~~~l~~la~~-----------~~TP~~vidl~~l~~n~~~l~~~~~ 74 (441)
T 3n2b_A 17 NLYFQSNA-MDYFNYQEDGQLWA----------EQVPLADLANQ-----------YGTPLYVYSRATLERHWHAFDKSVG 74 (441)
T ss_dssp CTTCCBCS-SCSEEECTTSSEEE----------TTEEHHHHHHH-----------HCSSEEEEEHHHHHHHHHHHHHHTT
T ss_pred eeeeecCC-ccccCcccCCEEEE----------CCccHHHHHhh-----------cCCCEEEEEHHHHHHHHHHHHHhhc
Confidence 45555442 23677755788877 47899999999 9999999999999999999999997
Q ss_pred HhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHH
Q 005135 151 FAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLAL 230 (712)
Q Consensus 151 ~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng~K~~e~I~~Al 230 (712)
. .+++++|++|||+++.|++.+.+.| +|+||+|.+|+..++++|+ ++++|++++++|++++|+.|+
T Consensus 75 ~--------~~~~i~yavKAn~~~~v~~~l~~~G----~g~dvaS~~E~~~~~~~G~--~~~~I~~~g~~k~~~ei~~a~ 140 (441)
T 3n2b_A 75 D--------YPHLICYAVKANSNLGVLNTLARLG----SGFDIVSVGELERVLAAGG--DPSKVVFSGVGKTEAEMKRAL 140 (441)
T ss_dssp T--------SCEEEEEEGGGCCCHHHHHHHHHTT----CEEEESSHHHHHHHHHTTC--CGGGEEECCTTCCHHHHHHHH
T ss_pred c--------CCcEEEEEeccCCCHHHHHHHHHcC----CcEEEeCHHHHHHHHHcCC--CcccEEEcCCCCCHHHHHHHH
Confidence 4 1479999999999999999999999 5999999999999999995 778899998899999999998
Q ss_pred HhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCC-CCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCC
Q 005135 231 LARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTK-HSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEML 309 (712)
Q Consensus 231 ~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~-~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L 309 (712)
+ .|+. +++|||++||++|.+++++.+++++|+||||++.. +++.|++||+..+|||++++++.++++++++.+.|
T Consensus 141 ~---~gv~-~~~vds~~el~~l~~~a~~~~~~~~V~lRvn~~~~~~~~~~i~tG~~~sKfG~~~~~~~~~~~~~~~~~~l 216 (441)
T 3n2b_A 141 Q---LKIK-CFNVESEPELQRLNKVAGELGVKAPISLRINPDVDAKTHPYISTGLRDNKFGITFDRAAQVYRLAHSLPNL 216 (441)
T ss_dssp H---TTCS-EEEECSHHHHHHHHHHHHHHTCCEEEEEEBCCCCCTTTCHHHHHHHHTSSSSBCGGGHHHHHHHHHHCTTE
T ss_pred H---CCCC-EEEEcCHHHHHHHHHHHHhcCCCcEEEEEeccCCCcCCCcccccCCCCCcccCCHHHHHHHHHHHhcCCCe
Confidence 7 4554 58999999999999999988889999999999865 44568889888999999999999999999998888
Q ss_pred CceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCCCCCCCCCCcCCCHHHHHHHHHHH
Q 005135 310 DCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEEYASAVVQA 389 (712)
Q Consensus 310 ~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s~~~~~~~s~~ysleeya~~Iv~~ 389 (712)
+ +.|||||+|||+.+++.++++++++.+++.++++.|+++++||||||||++|.++. .+++++|++.|...
T Consensus 217 ~-l~Glh~H~gs~~~d~~~~~~a~~~~~~l~~~l~~~G~~l~~LdiGGG~gi~y~~~~--------~~~~~~~~~~i~~~ 287 (441)
T 3n2b_A 217 D-VHGIDCHIGSQLTALAPFIDATDRLLALIDSLKAEGIHIRHLDVGGGLGVVYRDEL--------PPQPSEYAKALLDR 287 (441)
T ss_dssp E-EEEEECCTTCSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCSCCCEEC-------------CEECHHHHHHHHH
T ss_pred E-EEEEEEeecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEECCCcccCCCCCC--------CCCHHHHHHHHHHH
Confidence 8 99999999999999999999999999999999999999999999999999997532 36899999998877
Q ss_pred HHHHHHhcCCCCCeEEecCcchhccccceEEEEEEEEEecCCCCCCCCcchhhHhhhchhhhHHHHHHHHHHHHHhhhhc
Q 005135 390 IRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEAVSASVSRAAPVAMSPLGLQYLVEGLTEDARSDYTKMTTAALRAMEI 469 (712)
Q Consensus 390 l~~~~~~~gv~~p~Li~EPGRalvA~agvLVt~Vi~vk~~~~~~~~~~~~~~~~lvdg~~~~~~~~y~~~~~~~~~g~~~ 469 (712)
+++. ..++|++|||||||+++|+||++|+++|+..++.++ ++|+
T Consensus 288 l~~~------~~~~l~~EPGR~lva~ag~lv~~V~~~K~~~~~~~~--------~vD~---------------------- 331 (441)
T 3n2b_A 288 LERH------RDLELIFEPGRAIAANAGVLVTKVEFLKHTEHKNFA--------IIDA---------------------- 331 (441)
T ss_dssp HTTT------CCSEEEECCSHHHHGGGEEEEEEEEEEEEC--CEEE--------EESC----------------------
T ss_pred HHhc------cCCEEEEeCCHHHHhhccEEEEEEEEEEecCCceEE--------EEcc----------------------
Confidence 7642 236999999999999999999999999986542222 2444
Q ss_pred cCCCCccccccccccccccchhhhcCCcceeeecCCCCCCCCeeeEeecccccCCCccccccCCCcccCCccccCCCCCC
Q 005135 470 GASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGE 549 (712)
Q Consensus 470 ~~~~~~~~Y~~N~Svf~SlpD~w~i~q~fPI~pl~rl~e~p~~~~~l~G~TCdS~D~I~~fi~~~~~LPl~~l~~G~~~~ 549 (712)
+|+++.++ ++|+ .| +++.|+.+ .+.+...++|+||||+|.|+|.+ ++.| ++++|
T Consensus 332 gm~~~~rp-----~ly~----~~-----~~~~~~~~-~~~~~~~~~v~Gp~C~s~D~l~~----~~~l---~l~~G---- 385 (441)
T 3n2b_A 332 AMNDLIRP-----ALYQ----AW-----QDIIPLRP-RQGEAQTYDLVGPVCETSDFLGK----DRDL---VLQEG---- 385 (441)
T ss_dssp CTTTCCC---------------------CCEEESSC-CSSCCEEEEEECSSSSTTCEEEE----EEEE---CCCTT----
T ss_pred ccccccch-----HHhC----cc-----cceEEccC-CCCCceeEEEECCcCCCCCEEee----cccc---CCCCC----
Confidence 45554332 2332 22 24556543 34467889999999999999876 3444 58999
Q ss_pred CcccEEEeecccchhccccCCCCCCCCCcEEEEEecCCCCeEEEEEcCCCCCHHHHHHhcCCCH
Q 005135 550 RGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEP 613 (712)
Q Consensus 550 ~~~d~L~~~~~GAYq~~m~s~fNlf~~p~~V~V~~~d~~g~~~i~r~~~g~t~~dvl~~~~~~~ 613 (712)
|+|+|+++|||+.+|+++||+|++|++|.|+ + |+++++| ++||++|+++.....|
T Consensus 386 ---D~l~~~~~GAY~~~~ss~fN~~~~p~~v~v~--~--~~~~~ir--~ret~~dl~~~~~~~~ 440 (441)
T 3n2b_A 386 ---DLLAVRSSGAYGFTMSSNYNTRPRVAEVMVD--G--NKTYLVR--QREELSSLWALESVLP 440 (441)
T ss_dssp ---CEEEESSCSSSSGGGCBCTTTCCCCEEEEEE--T--TEEEEEE--CCCCGGGGGTTBCCCC
T ss_pred ---CEEEEeCCCcCchhhhccccCCCCCcEEEEE--C--CcEEEEE--ecCCHHHHhhccccCC
Confidence 9999999999999999999999999999997 3 5799999 8999999999876543
No 6
>2o0t_A Diaminopimelate decarboxylase; PLP binding enzyme, lysine biosynthesis, STRU genomics, TB structural genomics consortium, TBSGC; HET: LLP; 2.33A {Mycobacterium tuberculosis} PDB: 1hkv_A* 1hkw_A
Probab=100.00 E-value=7.7e-65 Score=570.68 Aligned_cols=428 Identities=24% Similarity=0.334 Sum_probs=362.0
Q ss_pred CCCCCCCceeCCCccEEEecCCCCcCCcCCcCHHHHHHHhCCCCCCCCCCCCCcEEEEcHHHHHHHHHHHHHHHHHhHHh
Q 005135 76 DSWGAPYFAVNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPKSVGGLGLQLPLIVRLPDVLRDRLESLHSAFEFAIQT 155 (712)
Q Consensus 76 ~~wg~~yf~i~~~G~l~v~p~~~~~l~~~~i~l~el~~~~~~~~~~~~~g~~tPl~V~d~d~L~~ni~~l~~af~~a~~~ 155 (712)
..|+ ++|.+|++|+|++ +++++.+|+++ ++||+||+|++.|++|+++|+++|.
T Consensus 12 ~~w~-~~~~~~~~~~l~~----------~~~~l~~l~~~-----------~~tP~~vid~~~l~~n~~~l~~~~~----- 64 (467)
T 2o0t_A 12 NVWP-RNTTRDEVGVVCI----------AGIPLTQLAQE-----------YGTPLFVIDEDDFRSRCRETAAAFG----- 64 (467)
T ss_dssp TTSC-TTEEECSSSCEEE----------TTEEHHHHHHH-----------HCSSEEEEEHHHHHHHHHHHHHHTS-----
T ss_pred ccCC-cceEEcCCCeEEE----------CCccHHHHHhh-----------cCCCEEEEeHHHHHHHHHHHHHhcC-----
Confidence 3677 6999999999988 25789999999 9999999999999999999999883
Q ss_pred cCCCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhccC
Q 005135 156 QGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKL 235 (712)
Q Consensus 156 ~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~ 235 (712)
.+++++|++|||+++.|++.+.+.| +|++|+|.+|+..++++|+ +|++|++.++.|++++|+.|+. .
T Consensus 65 ----~~~~i~~avKan~~~~v~~~l~~~G----~g~~vas~~E~~~~~~~G~--~~~~I~~~g~~k~~~~i~~a~~---~ 131 (467)
T 2o0t_A 65 ----SGANVHYAAKAFLCSEVARWISEEG----LCLDVCTGGELAVALHASF--PPERITLHGNNKSVSELTAAVK---A 131 (467)
T ss_dssp ----SGGGBEEEGGGCCCHHHHHHHHHHT----CEEEECSHHHHHHHHHTTC--CGGGEEECCTTCCHHHHHHHHH---H
T ss_pred ----CCcEEEEEeccCCCHHHHHHHHHcC----CeEEEeCHHHHHHHHHcCC--CcccEEEeCCCCCHHHHHHHHH---C
Confidence 2479999999999999999999999 5999999999999999995 6789999999999999999987 3
Q ss_pred CCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCC-CCCCccccCCCCCCCCCCH--HHHHHHHHHHHHcCCCCce
Q 005135 236 DLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTK-HSGHFGSTSGEKGKFGLTT--TQILRVVKKLEVAEMLDCF 312 (712)
Q Consensus 236 G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~-~~~~~~~tgg~~SKFGl~~--~e~~~~l~~l~~~~~L~~l 312 (712)
|+. .++|||++||++|.+.+++.+++.+|+||||++.. +++.|++++++.+|||+++ +|+.++++++++.+.|+ +
T Consensus 132 gv~-~i~vds~~el~~l~~~a~~~~~~~~v~lrvn~g~~~~~~~~~~~~~~~srfG~~~~~~e~~~~~~~~~~~~~l~-l 209 (467)
T 2o0t_A 132 GVG-HIVVDSMTEIERLDAIAGEAGIVQDVLVRLTVGVEAHTHEFISTAHEDQKFGLSVASGAAMAAVRRVFATDHLR-L 209 (467)
T ss_dssp TCS-EEEECSHHHHHHHHHHHHHHTCCEEEEEEEECSEEEEETEEEEESSCCSSSSEETTTTHHHHHHHHHHHCSSEE-E
T ss_pred CCC-EEEECCHHHHHHHHHHHHhhCCCCeEEEEEcCCCCCCCCcccccCCCCCCcCCcCCHHHHHHHHHHHHhCCCCC-E
Confidence 454 68999999999999999888888999999999743 4567889999999999987 58999999999988888 9
Q ss_pred eEEEEecCCCCCChHHHHHHHHHHHHHHHHHH-HcC----CCCcEEEEcCCCCcCcCCCCCCCCCCCcCCCHHHHHHHHH
Q 005135 313 QLLHFHIGSQIPSTALLTDGVGEAAQIYCELV-RLG----ANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEEYASAVV 387 (712)
Q Consensus 313 ~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~-~~G----~~l~~IDIGGGlgv~Y~~s~~~~~~~s~~ysleeya~~Iv 387 (712)
.|||||+|||+.+.+.+.++++.+.+++.+++ +.| +++++||+|||||++|..++. ++++++|++.|.
T Consensus 210 ~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~~~~~ln~GGG~~i~y~~~~~-------~~~~~~~~~~v~ 282 (467)
T 2o0t_A 210 VGLHSHIGSQIFDVDGFELAAHRVIGLLRDVVGEFGPEKTAQIATVDLGGGLGISYLPSDD-------PPPIAELAAKLG 282 (467)
T ss_dssp EEEECCCEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCEEECCCCBCCCSSTTCC-------CCCHHHHHHHHH
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCEEEeCCCcCcCCCCCCC-------CCCHHHHHHHHH
Confidence 99999999999999999999999999999996 568 999999999999999975432 479999999999
Q ss_pred HHHHHHHHhcCCCCCeEEecCcchhccccceEEEEEEEEEecCCCCCCCCcchhhHh-hhchhhhHHHHHHHHHHHHHhh
Q 005135 388 QAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEAVSASVSRAAPVAMSPLGLQYL-VEGLTEDARSDYTKMTTAALRA 466 (712)
Q Consensus 388 ~~l~~~~~~~gv~~p~Li~EPGRalvA~agvLVt~Vi~vk~~~~~~~~~~~~~~~~l-vdg~~~~~~~~y~~~~~~~~~g 466 (712)
..++++|+.+|++.|+|++||||++++++++|+++|+++|+..... ..+++|+ +|+
T Consensus 283 ~~i~~~~~~~g~~~~~l~~EpGR~~v~~ag~l~t~V~~vK~~~~g~----~~~~~~~~vd~------------------- 339 (467)
T 2o0t_A 283 TIVSDESTAVGLPTPKLVVEPGRAIAGPGTITLYEVGTVKDVDVSA----TAHRRYVSVDG------------------- 339 (467)
T ss_dssp HHHHHHHHHTTCCCCEEEBCCSHHHHSTTEEEEEEEEEEEEEECSS----SCEEEEEEESC-------------------
T ss_pred HHHHHHHHhcCCCCCeEEeccchheeccceEEEEEEEEEeecccCC----CCccEEEEEcC-------------------
Confidence 9999999998988899999999999999999999999999852100 0012231 232
Q ss_pred hhccCCCCccccccccccccccchhhhcCCcceeeecCCCCCCCCeeeEeecccccCCCccccccCCCcccCCccccCCC
Q 005135 467 MEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGG 546 (712)
Q Consensus 467 ~~~~~~~~~~~Y~~N~Svf~SlpD~w~i~q~fPI~pl~rl~e~p~~~~~l~G~TCdS~D~I~~fi~~~~~LPl~~l~~G~ 546 (712)
+|++..++ .+ .+..||++++++....+..+++|+|+||+|+|++.. +..||- ++++|
T Consensus 340 ---g~~~~~~p-------------~~-y~~~~~~~~~~~~~~~~~~~~~v~G~~C~s~D~~~~----d~~lp~-~l~~G- 396 (467)
T 2o0t_A 340 ---GMSDNIRT-------------AL-YGAQYDVRLVSRVSDAPPVPARLVGKHCESGDIIVR----DTWVPD-DIRPG- 396 (467)
T ss_dssp ---CTTTCCHH-------------HH-HCCCCCEEECSSCCCSCEEEEEEECSSSSTTCEEEE----EEEEET-TCCTT-
T ss_pred ---ccccccch-------------HH-hCCcCceEecCCCCCCCceeEEEECCCcCCCCEEEe----ccccCC-CCCCC-
Confidence 22222221 11 123456667766544556789999999999999875 334441 78999
Q ss_pred CCCCcccEEEeecccchhccccCCCCCCCCCcEEEEEecCCCCeEEEEEcCCCCCHHHHHHhcC
Q 005135 547 CGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQ 610 (712)
Q Consensus 547 ~~~~~~d~L~~~~~GAYq~~m~s~fNlf~~p~~V~V~~~d~~g~~~i~r~~~g~t~~dvl~~~~ 610 (712)
|+|+|+++|||+.+|+++||+|++|++|+|. + ++..++| +++|++|+++...
T Consensus 397 ------D~l~~~~~GAY~~~~~s~fn~~~~p~~v~v~--~--~~~~~i~--rre~~~dl~~~~~ 448 (467)
T 2o0t_A 397 ------DLVAVAATGAYCYSLSSRYNMVGRPAVVAVH--A--GNARLVL--RRETVDDLLSLEV 448 (467)
T ss_dssp ------CEEEESCCSSSSSTTCBCGGGCCCCEEEEEE--T--TEEEEEE--CCCCHHHHHTTBC
T ss_pred ------CEEEEcCCCcchHHHhhHhhCCCCCcEEEEe--C--CeEEEEE--cCCCHHHHHhccc
Confidence 9999999999999999999999999999997 3 4677777 7999999999886
No 7
>7odc_A Protein (ornithine decarboxylase); pyridoxal-5'-phosphate, PLP, group IV decarboxylase, polyami parasitical, chemotherapy target, putrescine; HET: PLP; 1.60A {Mus musculus} SCOP: b.49.2.3 c.1.6.1 PDB: 2on3_A 1d7k_A*
Probab=100.00 E-value=1.2e-62 Score=546.77 Aligned_cols=401 Identities=19% Similarity=0.234 Sum_probs=317.8
Q ss_pred CCcCHHHHHHHhCCCCCCCCCCCCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHc
Q 005135 104 QEIDLLKIVKKVSDPKSVGGLGLQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKF 183 (712)
Q Consensus 104 ~~i~l~el~~~~~~~~~~~~~g~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~ 183 (712)
+++++.++++++..... ..+.+||+||+|++.|++|+++|+++|+ +++++|++|||+++.|++.+.++
T Consensus 16 ~~~~~~~~i~~~~~~~~--~~~~~tP~~v~dl~~l~~n~~~~~~~~~----------~~~i~yavKAn~~~~v~~~l~~~ 83 (424)
T 7odc_A 16 EGFTAKDILDQKINEVS--SSDDKDAFYVADLGDILKKHLRWLKALP----------RVTPFYAVKCNDSRAIVSTLAAI 83 (424)
T ss_dssp SSCCHHHHHHHHHC--------CCCCEEEEEHHHHHHHHHHHHHHCT----------TEEEEEEGGGCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhcc--cCCCCCcEEEeeHHHHHHHHHHHHHhCC----------CCeEEEEeccCCcHHHHHHHHHc
Confidence 46789999988654421 1136899999999999999999999885 36899999999999999999999
Q ss_pred CCCCccceEecCHHHHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCc
Q 005135 184 GSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRP 263 (712)
Q Consensus 184 G~~~~~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~ 263 (712)
| +|+||+|.+|+++++++|+ ++++|+|++++|++++|+.|++ .|+. .++|||++||++|.++++ ..
T Consensus 84 G----~g~dvaS~~E~~~~~~~G~--~~~~Ii~~g~~k~~~ei~~a~~---~gv~-~~~vds~~el~~l~~~~~----~~ 149 (424)
T 7odc_A 84 G----TGFDCASKTEIQLVQGLGV--PAERVIYANPCKQVSQIKYAAS---NGVQ-MMTFDSEIELMKVARAHP----KA 149 (424)
T ss_dssp T----CEEEECSHHHHHHHHHTTC--CGGGEEECCSSCCHHHHHHHHH---TTCC-EEEECSHHHHHHHHHHCT----TC
T ss_pred C----CcEEECCHHHHHHHHHcCC--ChhhEEECCCCCCHHHHHHHHH---CCCC-EEEeCCHHHHHHHHHhCC----CC
Confidence 9 5999999999999999995 7889999999999999999987 5665 579999999999988764 37
Q ss_pred eEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHH
Q 005135 264 VIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCEL 343 (712)
Q Consensus 264 ~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L 343 (712)
+|+||||++.. .+++...+|||++.+++.++++++++. .++ +.|||||+|||+.+++.+.++++++.++++.+
T Consensus 150 ~v~lRvn~~~~-----~~~~~~~skfG~~~~~~~~~~~~~~~~-~l~-l~Glh~H~gsq~~d~~~~~~a~~~~~~~~~~~ 222 (424)
T 7odc_A 150 KLVLRIATDDS-----KAVCRLSVKFGATLKTSRLLLERAKEL-NID-VIGVSFHVGSGCTDPDTFVQAVSDARCVFDMA 222 (424)
T ss_dssp EEEEEBCC----------------CCCBCHHHHHHHHHHHHHT-TCE-EEEEECCCCSSCCCTHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCC-----CCCCCCCCCCCCCHHHHHHHHHHHHhC-CCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 89999998632 134566899999999999999999886 467 99999999999999999999999999999988
Q ss_pred HHcCCCCcEEEEcCCCCcCcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCcchhccccceEEEEE
Q 005135 344 VRLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEA 423 (712)
Q Consensus 344 ~~~G~~l~~IDIGGGlgv~Y~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPGRalvA~agvLVt~V 423 (712)
++.|+++++|||||||+++++. ++++++|++.|..++++.|... ..++|++|||||||+++|+||++|
T Consensus 223 ~~~G~~~~~ldiGGG~~~~~~~----------~~~~~~~a~~i~~~~~~~~~~~--~~~~ii~EPGR~lva~ag~lv~~V 290 (424)
T 7odc_A 223 TEVGFSMHLLDIGGGFPGSEDT----------KLKFEEITSVINPALDKYFPSD--SGVRIIAEPGRYYVASAFTLAVNI 290 (424)
T ss_dssp HHHTCCCCEEECCCCCCCSSSS----------SSCHHHHHHHHHHHHHHHSCGG--GTCEEEECCSHHHHGGGEEEEEEE
T ss_pred HhcCCCCCEEEeCCCcCCCCCC----------CCCHHHHHHHHHHHHHHHhccc--CCcEEEECCCHHhhhhcEEEEEEE
Confidence 8999999999999999976421 4899999999999999887632 236999999999999999999999
Q ss_pred EEEEecCCCCCCCCcchhhHhhhchhhhHHHHHHHHHHHHHhhhhccCCCCccccccccccccccchhhh-cCCcceeee
Q 005135 424 VSASVSRAAPVAMSPLGLQYLVEGLTEDARSDYTKMTTAALRAMEIGASDPVRTYHVNLSIFTSIPDYWA-IGQLFPIVP 502 (712)
Q Consensus 424 i~vk~~~~~~~~~~~~~~~~lvdg~~~~~~~~y~~~~~~~~~g~~~~~~~~~~~Y~~N~Svf~SlpD~w~-i~q~fPI~p 502 (712)
+++|...+.... .|+-. ...+...+|++|.|+|.++...+. .....|++.
T Consensus 291 ~~~k~~~~~~~~---------~~~~~--------------------~~~~~~~~~~i~~g~~~~~~~~ly~~~~~~p~~~ 341 (424)
T 7odc_A 291 IAKKTVWKEQPG---------SDDED--------------------ESNEQTFMYYVNDGVYGSFNCILYDHAHVKALLQ 341 (424)
T ss_dssp EEEEEEC------------------------------------------CCEEEEEESCCTTTTTHHHHHSCCCCCCEES
T ss_pred EEEEEccccccc---------ccccc--------------------ccCcceEEEEEeCCcCCChhhHhhccCccceeee
Confidence 999986431000 00000 000112569999999998844332 112224432
Q ss_pred cCC-CCCCCCeeeEeecccccCCCccccccCCCcccCCccccCCCCCCCcccEEEeecccchhccccCCCCCCCCCcEEE
Q 005135 503 IHH-LDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVR 581 (712)
Q Consensus 503 l~r-l~e~p~~~~~l~G~TCdS~D~I~~fi~~~~~LPl~~l~~G~~~~~~~d~L~~~~~GAYq~~m~s~fNlf~~p~~V~ 581 (712)
.+ ..+.+...++|+||||+|.|+|.+ +..|| ++++| |+|+|.++|||+.+|+++||+|++|++|+
T Consensus 342 -~~~~~~~~~~~~~v~Gp~C~s~D~l~~----~~~Lp--~l~~G-------D~l~~~~~GAY~~s~ss~fN~~~~p~~v~ 407 (424)
T 7odc_A 342 -KRPKPDEKYYSSSIWGPTCDGLDRIVE----RCNLP--EMHVG-------DWMLFENMGAYTVAAASTFNGFQRPNIYY 407 (424)
T ss_dssp -SCCCTTCCEEEEEEECSSSCTTCEEEE----EEEEE--CCCTT-------CEEEECSCCSSSGGGCCCGGGCCCCEEEE
T ss_pred -cCCCCCCCeeeEEEECCCCCCCCEecc----cccCC--CCCCC-------CEEEECCCCCCchhhccCCCCCCCCeEEE
Confidence 22 123456789999999999999976 56777 79999 99999999999999999999999999998
Q ss_pred EEecCCCCeEEEEE
Q 005135 582 VLQSDGPHSFAVTR 595 (712)
Q Consensus 582 V~~~d~~g~~~i~r 595 (712)
+. .+ +.|.++|
T Consensus 408 ~~-~~--~~~~~ir 418 (424)
T 7odc_A 408 VM-SR--PMWQLMK 418 (424)
T ss_dssp EE-EH--HHHHHHC
T ss_pred EE-cc--hHHHHHH
Confidence 76 22 4576666
No 8
>2j66_A BTRK, decarboxylase; butirosin, AHBA biosynthesis, lyase; HET: PLP; 1.65A {Bacillus circulans}
Probab=100.00 E-value=9.6e-62 Score=539.11 Aligned_cols=415 Identities=17% Similarity=0.262 Sum_probs=340.0
Q ss_pred CCcCHHHHHHHhCCCCCCCCCCCCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHc
Q 005135 104 QEIDLLKIVKKVSDPKSVGGLGLQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKF 183 (712)
Q Consensus 104 ~~i~l~el~~~~~~~~~~~~~g~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~ 183 (712)
+++++.+|+++ ++||+||+|++.|++|+++|+++|+. +++++|++|||+++.|++.+.+.
T Consensus 4 ~~~~~~~l~~~-----------~~tP~~vid~~~l~~n~~~l~~~~~~---------~~~i~~avKan~~~~v~~~l~~~ 63 (428)
T 2j66_A 4 DQAEITALTKR-----------FETPFYLYDGDFIEAHYRQLRSRTNP---------AIQFYLSLKANNNIHLAKLFRQW 63 (428)
T ss_dssp CHHHHHHHHHH-----------SCSSEEEEEHHHHHHHHHHHHHTSCT---------TEEEEEEGGGCCCHHHHHHHHHT
T ss_pred CcccHHHHHHh-----------hCCCEEEEeHHHHHHHHHHHHHhcCC---------CcEEEEEeeeCCCHHHHHHHHHc
Confidence 56789999999 99999999999999999999998852 47999999999999999999999
Q ss_pred CCCCccceEecCHHHHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCc
Q 005135 184 GSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRP 263 (712)
Q Consensus 184 G~~~~~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~ 263 (712)
| .|++|+|.+|++.++++|+ ++++|++.++.|+.++|+.|+. .|+. +++|||++||++|.+.+++.+++.
T Consensus 64 G----~g~~vas~~E~~~~~~~G~--~~~~I~~~g~~k~~~~i~~a~~---~~v~-~~~vds~~el~~l~~~a~~~~~~~ 133 (428)
T 2j66_A 64 G----LGVEVASAGELALARHAGF--SAENIIFSGPGKKRSELEIAVQ---SGIY-CIIAESVEELFYIEELAEKENKTA 133 (428)
T ss_dssp T----CEEEESSHHHHHHHHHTTC--CGGGEEECCSCCCHHHHHHHHH---HTCS-EEEECSHHHHHHHHHHHHHHTCCE
T ss_pred C----CeEEEeCHHHHHHHHHcCC--CcCeEEEeCCCCCHHHHHHHHH---CCCC-EEEECCHHHHHHHHHHHHhhCCCc
Confidence 9 5999999999999999995 6778999999999999999987 3443 799999999999999999888889
Q ss_pred eEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHH
Q 005135 264 VIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCEL 343 (712)
Q Consensus 264 ~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L 343 (712)
+|+||||++...+++|..++++.+|||++.+++.++++++++.+.++ +.|||+|+|||+.+.+.+.++++++.+++.++
T Consensus 134 ~V~lrvn~g~~~~~~~~~~~~~~srfG~~~~e~~~~~~~~~~~~~l~-l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l 212 (428)
T 2j66_A 134 RVAIRINPDKSFGSTAIKMGGVPRQFGMDESMLDAVMDAVRSLQFTK-FIGIHVYTGTQNLNTDSIIESMKYTVDLGRNI 212 (428)
T ss_dssp EEEEEEECSSCC--CCCSSSCCCCSSSEEGGGHHHHHHHHHHCTTEE-EEEEECCCCSCBCCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHhCCCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999987777888899999999999999999999999998888 99999999999999999999999999999999
Q ss_pred H-HcCCCCcEEEEcCCCCcCcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCcchhccccceEEEE
Q 005135 344 V-RLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFE 422 (712)
Q Consensus 344 ~-~~G~~l~~IDIGGGlgv~Y~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPGRalvA~agvLVt~ 422 (712)
+ +.|+++++||+|||||++|...+. .+++++|++.|...+..++. .+.+.++|++||||++++++++|+++
T Consensus 213 ~~~~g~~~~~l~~GGG~~i~y~~~~~-------~~~~~~~~~~i~~~~~~~~~-~~~~~~~l~~EpGr~~~~~ag~l~t~ 284 (428)
T 2j66_A 213 YERYGIVCECINLGGGFGVPYFSHEK-------ALDIGKITRTVSDYVQEARD-TRFPQTTFIIESGRYLLAQAAVYVTE 284 (428)
T ss_dssp HHHHCCCCSEEECCCCBCCCCC--CC-------CCCHHHHHHHHHHHHHHHHT-TTCTTCEEEEEESHHHHGGGEEEEEE
T ss_pred HHHhCCCCCEEEeCCCcCcCCCCCCC-------CCCHHHHHHHHHHHHHHHHh-ccCCCcEEEEecCHHHHhhceEEEEE
Confidence 4 569999999999999999975432 47999999999999988765 34567899999999999999999999
Q ss_pred EEEEEecCCCCCCCCcchhhH-hhhchhhhHHHHHHHHHHHHHhhhhccCCCCccccccccccccccchhhhcCCcceee
Q 005135 423 AVSASVSRAAPVAMSPLGLQY-LVEGLTEDARSDYTKMTTAALRAMEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIV 501 (712)
Q Consensus 423 Vi~vk~~~~~~~~~~~~~~~~-lvdg~~~~~~~~y~~~~~~~~~g~~~~~~~~~~~Y~~N~Svf~SlpD~w~i~q~fPI~ 501 (712)
|+++|+.++ .++ ++|+ +|+++.++.. |.. .| +..+|+.
T Consensus 285 V~~vK~~~g---------~~~~~~d~----------------------g~~~~~~~~~-----~~~---~y--~~~~~~~ 323 (428)
T 2j66_A 285 VLYRKASKG---------EVFVIVDG----------------------GMHHHAASTF-----RGR---SM--RSNYPME 323 (428)
T ss_dssp EEEEEEETT---------EEEEEESC----------------------CTTTCTTC---------------------CEE
T ss_pred EEEEEecCC---------cEEEEECC----------------------ccccchhhhc-----cch---hc--cCcCcEE
Confidence 999998654 223 2343 3333333321 111 11 1234655
Q ss_pred ec---CCCCCCCCeeeEeecccccCCCccccccCCCcccCCccccCCCCCCCcccEEEeecccchhccccC-CCCCCCCC
Q 005135 502 PI---HHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGG-VHNLFGGP 577 (712)
Q Consensus 502 pl---~rl~e~p~~~~~l~G~TCdS~D~I~~fi~~~~~LPl~~l~~G~~~~~~~d~L~~~~~GAYq~~m~s-~fNlf~~p 577 (712)
++ ++....+..++.|+|++|+|+|++.. +..|| ++++| |+|+|+++|||+.+|++ +||+|++|
T Consensus 324 ~~~~~~~~~~~~~~~~~i~G~~C~s~D~l~~----d~~lp--~~~~G-------D~l~~~~~GAY~~~~~s~~fn~~~~p 390 (428)
T 2j66_A 324 YIPVREDSGRRELEKVTIAGPLCTPEDCLGK----DVHVP--ALYPG-------DLVCVLNSGAYGLSFSPVHFLGHPTP 390 (428)
T ss_dssp EEC---------CEEEEEECSSSSTTCEEEE----EEEES--CCCTT-------CEEEESSCSSSSGGGSCTTGGGCCCC
T ss_pred eecccCCCCCCCCceEEEEcCCCCCCcEEEe----cccCC--CCCCC-------CEEEEeCCCcchHHhhhhhhhCCCCC
Confidence 55 32223345789999999999999876 45566 89999 99999999999999997 99999999
Q ss_pred cEEEEEecCCCCeEEEEEcCCCCCHHHHHHhcCCCHHHHH
Q 005135 578 SVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQHEPELMF 617 (712)
Q Consensus 578 ~~V~V~~~d~~g~~~i~r~~~g~t~~dvl~~~~~~~~~l~ 617 (712)
++|+++ + |+++++| +++|++|+++....++..|+
T Consensus 391 ~~v~~~--~--~~~~~ir--~~e~~~dl~~~~~~~~~~~~ 424 (428)
T 2j66_A 391 IEILKR--N--GSYELIR--RKGTADDIVATQLQTESNLL 424 (428)
T ss_dssp EEEEEE--T--TEEEEEE--CCCCHHHHHGGGC-------
T ss_pred eEEEEE--C--CeEEEEE--cCCCHHHHhhcccCCcccce
Confidence 999997 3 5799999 89999999998876655543
No 9
>3mt1_A Putative carboxynorspermidine decarboxylase prote; PSI2, MCSG, structural genomics; 2.50A {Sinorhizobium meliloti}
Probab=100.00 E-value=1e-62 Score=537.19 Aligned_cols=362 Identities=13% Similarity=0.100 Sum_probs=286.4
Q ss_pred CCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHh
Q 005135 126 LQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSC 205 (712)
Q Consensus 126 ~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~ 205 (712)
++||+||+|++.|++|+++|+++|+.. +++++|++|||+++.|++.+.+.| .|+||+|.+|++++++.
T Consensus 2 ~gtP~yv~d~~~l~~n~~~l~~~~~~~--------~~~i~yavKAn~~~~v~~~l~~~G----~g~dvaS~~E~~~~~~~ 69 (365)
T 3mt1_A 2 IETPYYLIDKAKLTRNMERIAHVREKS--------GAKALLALKCFATWSVFDLMRDYM----DGTTSSSLFEVRLGRER 69 (365)
T ss_dssp CCSSEEEEEHHHHHHHHHHHHHHHHHH--------CCEEEEETTTCCCGGGHHHHTTTS----CEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeHHHHHHHHHHHHHHHhhc--------CCEEEEEehhcCCHHHHHHHHHhC----CeEEECCHHHHHHHHhh
Confidence 789999999999999999999999742 479999999999999999999999 59999999999999984
Q ss_pred cCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCC-CCCCccccCC
Q 005135 206 LCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTK-HSGHFGSTSG 284 (712)
Q Consensus 206 G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~-~~~~~~~tgg 284 (712)
+ |++|++.++.|++++|+.|++ .|. .++|||++||++|.+++++ ++|+|||||... +.+..++||+
T Consensus 70 -~---~~~ii~~~~~k~~~el~~a~~---~g~--~i~vds~~el~~l~~~a~~----~~v~lRvnp~~~~~~~~~i~tg~ 136 (365)
T 3mt1_A 70 -F---GKETHAYSVAYGDNEIDEVVS---HAD--KIIFNSISQLERFADKAAG----IARGLRLNPQVSSSSFDLADPAR 136 (365)
T ss_dssp -T---CSEEEEEESCCCTTTHHHHHH---HCS--EEEESSHHHHHHHGGGGTT----SEEEEEECCC-------------
T ss_pred -C---CCceEEECCCCCHHHHHHHHH---cCC--EEEECCHHHHHHHHHHhcc----CCEEEEEecCCCCCCCccccCCC
Confidence 4 367888888899899999997 343 6899999999999888764 789999999865 3345678898
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcC
Q 005135 285 EKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYD 364 (712)
Q Consensus 285 ~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~ 364 (712)
..||||++.+++.+. ..+ + +.|||||+|||+.+++.|.++++.+.+++.+ .|.++++||||||||++|.
T Consensus 137 ~~sKFG~~~~~~~~~-----~l~--~-~~Glh~HigSq~~~~~~~~~~~~~~~~~~~~---~g~~~~~ldiGGG~~i~y~ 205 (365)
T 3mt1_A 137 PFSRLGEWDVPKVER-----VMD--R-INGFMIHNNCENKDFGLFDRMLGEIEERFGA---LIARVDWVSLGGGIHFTGD 205 (365)
T ss_dssp ---CCSBCCHHHHHT-----TGG--G-CSEEEECCC--CCSHHHHHHHHHHHHHHHHH---HHTTSSEEECCSCCCTTST
T ss_pred CCCcCCCCHHHHhhh-----ccC--C-eEEEEEeCCCCCCCHHHHHHHHHHHHHHHHH---hCCCCCEEEeCCCcCCCCC
Confidence 999999999988763 111 3 7899999999999999999999988877654 4789999999999999985
Q ss_pred CCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCcchhccccceEEEEEEEEEecCCCCCCCCcchhhHh
Q 005135 365 GSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEAVSASVSRAAPVAMSPLGLQYL 444 (712)
Q Consensus 365 ~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPGRalvA~agvLVt~Vi~vk~~~~~~~~~~~~~~~~l 444 (712)
++++++|++.|.+.+++ .+ ++|++||||+||+++|+||++|+++|+. ++
T Consensus 206 -----------~~~~~~~~~~i~~~~~~----~~---~~l~~EPGR~lv~~ag~lv~~V~~~k~~-~~------------ 254 (365)
T 3mt1_A 206 -----------DYPVDAFSARLRAFSDR----YG---VQIYLEPGEASITKSTTLEVTVLDTLYN-GK------------ 254 (365)
T ss_dssp -----------TCCHHHHHHHHHHHHHH----HT---CEEEECCSHHHHTTSEEEEEEEEEEEES-SS------------
T ss_pred -----------CCCHHHHHHHHHHHHHH----hC---cEEEEeCchHhhccceEEEEEEEEEEEC-Cc------------
Confidence 26899999987666554 44 3899999999999999999999999975 31
Q ss_pred hhchhhhHHHHHHHHHHHHHhhhhccCCCCccccccccccccccchhhhcCCcceeeecCCCCCCCCeeeEeecccccCC
Q 005135 445 VEGLTEDARSDYTKMTTAALRAMEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSD 524 (712)
Q Consensus 445 vdg~~~~~~~~y~~~~~~~~~g~~~~~~~~~~~Y~~N~Svf~SlpD~w~i~q~fPI~pl~rl~e~p~~~~~l~G~TCdS~ 524 (712)
..+++|.|++..++|.|.. ..-|.+. .+.+...++|+||||+|+
T Consensus 255 -------------------------------~~~~vD~g~~~~~~~~~~~-~~~p~l~----~~~~~~~~~v~Gp~C~s~ 298 (365)
T 3mt1_A 255 -------------------------------NLAIVDSSIEAHMLDLLIY-RETAKVL----PNEGSHSYMICGKSCLAG 298 (365)
T ss_dssp -------------------------------EEEEESCCHHHHCHHHHHT-TCCCCCS----SCCSSEEEEEECSSCCSS
T ss_pred -------------------------------EEEEEcCccccCChHHhcC-CcCceec----cCCCceEEEEEeCCCCcc
Confidence 2344555555566666532 1123221 245678899999999999
Q ss_pred CccccccCCCcccCCccccCCCCCCCcccEEEeecccchhccccCCCCCCCCCcEEEEEecCCCCeEEEEEcCCCCCHHH
Q 005135 525 GKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGD 604 (712)
Q Consensus 525 D~I~~fi~~~~~LPl~~l~~G~~~~~~~d~L~~~~~GAYq~~m~s~fNlf~~p~~V~V~~~d~~g~~~i~r~~~g~t~~d 604 (712)
|+|.+ ...+| ++++| |+|+|+++|||+.+|+++||+|++|++|.|+ ++ +.+.++| ++|++|
T Consensus 299 D~l~~----~~~~~--~l~~G-------D~l~~~~~GAY~~~~~s~fn~~~~p~~v~v~--~~-~~~~~ir---ret~~d 359 (365)
T 3mt1_A 299 DVFGE----FRFAE--ELKVG-------DRISFQDAAGYTMVKKNWFNGVKMPAIAIRE--LD-GSVRTVR---EFTYAD 359 (365)
T ss_dssp CEEEE----EEESS--CCCTT-------CEEEESSCCTTSTTSCCCGGGCCCCEEEEEC--TT-SCEEEEE---CCCHHH
T ss_pred CEEcc----cccCC--CCCCC-------CEEEEecccchhhhhcccccCCCCCcEEEEE--CC-CcEEEee---ecCHHH
Confidence 99875 33444 79999 9999999999999999999999999999997 22 4588887 599999
Q ss_pred HHHhc
Q 005135 605 VLRVM 609 (712)
Q Consensus 605 vl~~~ 609 (712)
+++++
T Consensus 360 ~~~~~ 364 (365)
T 3mt1_A 360 YEQSL 364 (365)
T ss_dssp HHHHH
T ss_pred HHhhc
Confidence 99864
No 10
>1twi_A Diaminopimelate decarboxylase; antibiotic resistance, lysine biosynthesis, structural genomics, NYSGXRC, PSI; HET: LYS PLP; 2.00A {Methanocaldococcus jannaschii} SCOP: b.49.2.3 c.1.6.1 PDB: 1tuf_A*
Probab=100.00 E-value=1.6e-61 Score=538.22 Aligned_cols=425 Identities=20% Similarity=0.288 Sum_probs=358.9
Q ss_pred CCCCCceeCCCccEEEecCCCCcCCcCCcCHHHHHHHhCCCCCCCCCCCCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcC
Q 005135 78 WGAPYFAVNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPKSVGGLGLQLPLIVRLPDVLRDRLESLHSAFEFAIQTQG 157 (712)
Q Consensus 78 wg~~yf~i~~~G~l~v~p~~~~~l~~~~i~l~el~~~~~~~~~~~~~g~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~ 157 (712)
||+++|+++ +|+|.+ +++++.+|+++ ++||+|++|++.|++|+++|+++|+++..+.+
T Consensus 2 ~~~~~~~~~-~~~l~~----------~~~~~~~l~~~-----------~~tP~~vidl~~l~~n~~~l~~~~~~a~~~~~ 59 (434)
T 1twi_A 2 LGNDTVEIK-DGRFFI----------DGYDAIELAEK-----------FGTPLYVMSEEQIKINYNRYIEAFKRWEEETG 59 (434)
T ss_dssp TTCTTEEEE-TTEEEE----------TTEEHHHHHHH-----------HCSSEEEEEHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCceeEE-CCEEEE----------CCccHHHHHHh-----------hCCCEEEEEHHHHHHHHHHHHHhhhhhhcccC
Confidence 999999997 499987 35789999999 99999999999999999999999986554443
Q ss_pred CCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCC
Q 005135 158 YEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDL 237 (712)
Q Consensus 158 y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~ 237 (712)
.+++++|++|||+++.|++.+.+.| +|++|+|.+|+..++++|+ ++.+|++.++.|++++++.|++ .|+
T Consensus 60 --~~~~~~~avKan~~~~v~~~l~~~G----~g~~vas~~E~~~~~~~G~--~~~~I~~~g~~k~~~~i~~a~~---~~i 128 (434)
T 1twi_A 60 --KEFIVAYAYKANANLAITRLLAKLG----CGADVVSGGELYIAKLSNV--PSKKIVFNGNCKTKEEIIMGIE---ANI 128 (434)
T ss_dssp --CCEEEEEEGGGCCCHHHHHHHHHTT----CEEEECSHHHHHHHHHTTC--CGGGEEECCSSCCHHHHHHHHH---TTC
T ss_pred --CCeEEEEEEccCCCHHHHHHHHHcC----CcEEEeCHHHHHHHHHCCC--CCCcEEEECCCCCHHHHHHHHH---CCC
Confidence 2579999999999999999999999 5999999999999999995 6678999999999999999986 343
Q ss_pred cEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCC-CCCCccccCCCCCCCCCCHHH--HHHHHHHHHHcCCCCceeE
Q 005135 238 NVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTK-HSGHFGSTSGEKGKFGLTTTQ--ILRVVKKLEVAEMLDCFQL 314 (712)
Q Consensus 238 ~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~-~~~~~~~tgg~~SKFGl~~~e--~~~~l~~l~~~~~L~~l~G 314 (712)
. .++|||++||++|.+.+++.+++.+|+||||++.. +++.+.+||++.+|||++.++ +.++++++++.+.|+ +.|
T Consensus 129 ~-~~~vds~~el~~l~~~a~~~~~~~~v~lrvn~g~~~~~~~~~~tG~~~~rfG~~~~~~~~~~~~~~~~~~~~l~-l~G 206 (434)
T 1twi_A 129 R-AFNVDSISELILINETAKELGETANVAFRINPNVNPKTHPKISTGLKKNKFGLDVESGIAMKAIKMALEMEYVN-VVG 206 (434)
T ss_dssp S-EEEECSHHHHHHHHHHHHHHTCCEEEEEEEECCCCTTTCHHHHHHHHHSSCSEESTTSHHHHHHHHHHHCSSEE-EEE
T ss_pred C-EEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCCCCCcccccCCCCCCccCChhhhHHHHHHHHHHhCCCCC-EEE
Confidence 2 69999999999999999888888999999999865 445577788778999999988 999999999998888 999
Q ss_pred EEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHH
Q 005135 315 LHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVC 394 (712)
Q Consensus 315 LHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~ 394 (712)
||+|+|||+.+.+.+.++++++.+++.++++.|+++++||+||||+++|...+. .+++++|++.|...+..++
T Consensus 207 l~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~l~~GGg~~~~y~~~~~-------~~~~~~~~~~i~~~i~~~~ 279 (434)
T 1twi_A 207 VHCHIGSQLTDISPFIEETRKVMDFVVELKEEGIEIEDVNLGGGLGIPYYKDKQ-------IPTQKDLADAIINTMLKYK 279 (434)
T ss_dssp EECCCCSSBCCSHHHHHHHHHHHHHHHHHHHTTCCCSEEECCCCBCCCSSSSSC-------CCCHHHHHHHHHHHHHTTT
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCcCcCCCCCCC-------CCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999889999999999999999964322 4799999999999998887
Q ss_pred HhcCCCCCeEEecCcchhccccceEEEEEEEEEecCCCCCCCCcchhhHhhhchhhhHHHHHHHHHHHHHhhhhccCCCC
Q 005135 395 DRKNVKHPVLCSESGRAIVSHHSILIFEAVSASVSRAAPVAMSPLGLQYLVEGLTEDARSDYTKMTTAALRAMEIGASDP 474 (712)
Q Consensus 395 ~~~gv~~p~Li~EPGRalvA~agvLVt~Vi~vk~~~~~~~~~~~~~~~~lvdg~~~~~~~~y~~~~~~~~~g~~~~~~~~ 474 (712)
++.++ |++++||||++++++++|+++|+++|+.++...+ ++|+ |+.+.
T Consensus 280 ~~~g~--~~~~~EpGr~~~~~a~~l~~~V~~vk~~~g~~~~--------~vd~----------------------G~~d~ 327 (434)
T 1twi_A 280 DKVEM--PNLILEPGRSLVATAGYLLGKVHHIKETPVTKWV--------MIDA----------------------GMNDM 327 (434)
T ss_dssp TTSCC--CEEEECCSHHHHGGGEEEEEEEEEEEECSSCEEE--------EESC----------------------CTTTC
T ss_pred hhcCC--eEEEEccChHhhhhceEEEEEEEEEEecCCcEEE--------EEcC----------------------chhcc
Confidence 65554 7999999999999999999999999986542111 2332 23332
Q ss_pred ccccccccccccccchhhhcCCcceeeecCCCCCCCCeeeEeecccccCCCccccccCCCcccCCccccCCCCCCCcccE
Q 005135 475 VRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYY 554 (712)
Q Consensus 475 ~~~Y~~N~Svf~SlpD~w~i~q~fPI~pl~rl~e~p~~~~~l~G~TCdS~D~I~~fi~~~~~LPl~~l~~G~~~~~~~d~ 554 (712)
.++ ++| +..++++++++ +..+ .++.|+|++|+|+|++.. +..|| ++++| |+
T Consensus 328 ~~~-----~l~---------~~~~~~~~~~~-~~~~-~~~~i~G~~C~s~D~~~~----d~~lp--~~~~G-------D~ 378 (434)
T 1twi_A 328 MRP-----AMY---------EAYHHIINCKV-KNEK-EVVSIAGGLCESSDVFGR----DRELD--KVEVG-------DV 378 (434)
T ss_dssp CHH-----HHH---------CCCCCEEESBC-CSCE-EEEEEECSSSCTTCEEEE----EEEEE--CCCTT-------CE
T ss_pred cch-----HHh---------cccceeEecCC-CCCC-ceEEEECCCCCCCCEEee----ccCCC--CCCCC-------CE
Confidence 211 111 22346666653 2233 789999999999999876 44566 89999 99
Q ss_pred EEeecccchhccccCCCCCCCCCcEEEEEecCCCCeEEEEEcCCCCCHHHHHHhcCC
Q 005135 555 LGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQH 611 (712)
Q Consensus 555 L~~~~~GAYq~~m~s~fNlf~~p~~V~V~~~d~~g~~~i~r~~~g~t~~dvl~~~~~ 611 (712)
|+|+++|||+.+|+++||+|++|++|+++ + ++++++| +++|++|+++....
T Consensus 379 v~~~~~GAY~~~~~s~fn~~~~p~~v~~~--~--~~~~~ir--~~~~~~d~~~~~~~ 429 (434)
T 1twi_A 379 LAIFDVGAYGISMANNYNARGRPRMVLTS--K--KGVFLIR--ERETYADLIAKDIV 429 (434)
T ss_dssp EEEECCSSSSGGGCBCTTTCCCCEEEEEE--T--TEEEEEE--CCCCHHHHTTTBCC
T ss_pred EEEeCCCcchHhhhhhhhCCCCCeEEEEE--C--CcEEEEE--ecCCHHHHHhcccc
Confidence 99999999999999999999999999997 3 5799998 79999999998763
No 11
>3n29_A Carboxynorspermidine decarboxylase; lyase; HET: PLP; 1.90A {Campylobacter jejuni subsp}
Probab=100.00 E-value=1.1e-61 Score=537.74 Aligned_cols=375 Identities=15% Similarity=0.104 Sum_probs=287.6
Q ss_pred CCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHh
Q 005135 126 LQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSC 205 (712)
Q Consensus 126 ~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~ 205 (712)
++||+||+|++.|++|+++|+++|+.. +++++||+|||+++.|++.|.+.| .|+||+|.+|+++++++
T Consensus 42 ~~TP~yv~d~~~l~~n~~~l~~~~~~~--------~~~i~yAvKAN~~~~vl~~l~~~G----~G~dvaS~~El~~a~~~ 109 (418)
T 3n29_A 42 IQTPAYILEEDKLRKNCELLASVGEKS--------GAKVLLALKGFAFSGAMKIVGEYL----KGCTCSGLWEAKFAKEY 109 (418)
T ss_dssp CCSSEEEEEHHHHHHHHHHHHHHHHHH--------CCEEEEETTTCCCGGGHHHHHHHS----CEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEeHHHHHHHHHHHHHhhhhc--------CCEEEEEEccCCCHHHHHHHHHcC----CeEEECCHHHHHHHHhh
Confidence 999999999999999999999999752 479999999999999999999999 59999999999999987
Q ss_pred cCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCC-CCCCccccCC
Q 005135 206 LCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTK-HSGHFGSTSG 284 (712)
Q Consensus 206 G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~-~~~~~~~tgg 284 (712)
+ |++|++.++.|++++|+.|++. |+ .|+|||++||++|.++++ +++|+|||||... +++.+++|++
T Consensus 110 -~---~~~Ii~~~~~k~~~el~~A~~~---g~--~i~vds~~EL~~l~~~a~----~~~v~lRvnp~~~~~~~~~i~tg~ 176 (418)
T 3n29_A 110 -M---DKEIHTYSPAFKEDEIGEIASL---SH--HIVFNSLAQFHKFQSKTQ----KNSLGLRCNVEFSLAPKELYNPCG 176 (418)
T ss_dssp -T---CSEEEEEESSCCHHHHHHHHHH---CS--EEEESSHHHHHHHGGGCT----TSEEEEEBCCCCC----------C
T ss_pred -C---CCCEEEECCCCCHHHHHHHHHc---CC--eEEECCHHHHHHHHHhcC----CCCEEEEEeCCCCCCCCcccccCC
Confidence 4 4688888899999999999973 44 589999999999988765 4799999999865 4456788999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcC
Q 005135 285 EKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYD 364 (712)
Q Consensus 285 ~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~ 364 (712)
..+|||++++++.+. .+..+.|||||+||| .+++.|.++++.+.+++ .+.|+++++||||||||++|.
T Consensus 177 ~~sKFGi~~~~~~~~--------~l~~l~Glh~HigSq-~~~~~~~~~~~~~~~~~---~~~g~~l~~ldiGGGf~i~y~ 244 (418)
T 3n29_A 177 RYSRLGIRAKDFENV--------DLNAIEGLHFHALCE-ESADALEAVLKVFEEKF---GKWIGQMKWVNFGGGHHITKK 244 (418)
T ss_dssp TTCCSSBCGGGGTTC--------CCTTCCEEECCCCSS-BCHHHHHHHHHHHHHHH---GGGTTTCSEEECCSCBCTTST
T ss_pred CCCcCcCCHHHHHHh--------hcCceEEEEEecCCC-CCHHHHHHHHHHHHHHH---HHhCCCCCEEEeCCCcCCCCC
Confidence 999999999987652 231288999999999 79999988888876654 346899999999999999985
Q ss_pred CCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCcchhccccceEEEEEEEEEecCCCCCCCCcchhhHh
Q 005135 365 GSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEAVSASVSRAAPVAMSPLGLQYL 444 (712)
Q Consensus 365 ~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPGRalvA~agvLVt~Vi~vk~~~~~~~~~~~~~~~~l 444 (712)
++++++|++.|.+.+++ .++ +|++||||+||+++|+||++|+++|+. ++.+++.|.+...
T Consensus 245 -----------~~~~~~~~~~i~~~~~~----~~~---~ii~EPGR~lva~ag~lv~~V~~~K~~-~~~~~~vD~g~~~- 304 (418)
T 3n29_A 245 -----------GYDVEKLIALCKNFSDK----YGV---QVYLEPGEAVGWQTGNLVASVVDIIEN-EKQIAILDTSSEA- 304 (418)
T ss_dssp -----------TCCHHHHHHHHHHHHHH----HTC---EEEECCSHHHHTTSEEEEEEEEEEEES-SSEEEEESSCHHH-
T ss_pred -----------CCCHHHHHHHHHHHHHH----cCC---EEEEeCCHHhhhhcEEEEEEEEEEEeC-CCEEEEECCcccc-
Confidence 26899999887665554 443 899999999999999999999999986 3222222221110
Q ss_pred hhchhhhHHHHHHHHHHHHHhhhhccCCCCccccccccccccccchhhhcCCcceeeecCCCCCCCCeeeEeecccccCC
Q 005135 445 VEGLTEDARSDYTKMTTAALRAMEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSD 524 (712)
Q Consensus 445 vdg~~~~~~~~y~~~~~~~~~g~~~~~~~~~~~Y~~N~Svf~SlpD~w~i~q~fPI~pl~rl~e~p~~~~~l~G~TCdS~ 524 (712)
.|++.+ .+ +| ...+|++ |+. -.+++.|+.+. +.+...++|+||||+|+
T Consensus 305 --~m~d~~-----------------~~-----~~--rp~l~~a----~~~-~~h~~~~~~~~-~~~~~~~~v~Gp~C~s~ 352 (418)
T 3n29_A 305 --HMPDTI-----------------IM-----PY--TSEVLNA----RIL-ATRENEKISDL-KENEFAYLLTGNTCLAG 352 (418)
T ss_dssp --HSHHHH-----------------HT-----TC--CCCBTTE----EEE-ECTTCCBCCCC-CTTCEEEEEECSSSCTT
T ss_pred --cchhhh-----------------cc-----Cc--Cceeecc----ccc-cccccccccCC-CCCceEEEEEcCCCCCC
Confidence 011000 00 00 1112211 100 01234444332 34578899999999999
Q ss_pred CccccccCCCcccCCccccCCCCCCCcccEEEeecccchhccccCCCCCCCCCcEEEEEecCCCCeEEEEEcCCCCCHHH
Q 005135 525 GKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGD 604 (712)
Q Consensus 525 D~I~~fi~~~~~LPl~~l~~G~~~~~~~d~L~~~~~GAYq~~m~s~fNlf~~p~~V~V~~~d~~g~~~i~r~~~g~t~~d 604 (712)
|+|.+ ...+| ++++| |+|+|+++|||+.+|+++||+|++|++|+|+ ++ +.+.++| ++|++|
T Consensus 353 D~l~~----~~~~~--~l~~G-------D~l~~~~~GAY~~s~ss~fN~~~~p~~v~v~--~~-~~~~~iR---ret~~D 413 (418)
T 3n29_A 353 DVMGE----YAFDK--KLKIG-------DKIVFLDQIHYTIVKNTTFNGIRLPNLMLLD--HK-NELQMIR---EFSYKD 413 (418)
T ss_dssp CEEEE----EEESS--CCCTT-------CEEEESSCSSSSGGGCCCGGGCCCCEEEEEC--TT-SCEEEEE---CCCTHH
T ss_pred CEEee----cccCC--CCCCC-------CEEEEeCccchhHHHhccccCCCCCCEEEEE--cC-CcEEEEe---cCCHHH
Confidence 99875 33333 79999 9999999999999999999999999999996 23 5788887 699999
Q ss_pred HHHh
Q 005135 605 VLRV 608 (712)
Q Consensus 605 vl~~ 608 (712)
+++.
T Consensus 414 ~~~~ 417 (418)
T 3n29_A 414 YSLR 417 (418)
T ss_dssp HHTT
T ss_pred Hhhc
Confidence 9864
No 12
>1knw_A Diaminopimelate decarboxylase; pyridoxal-phosphate, decarboxylation, lysin barrel, lyase; HET: PLP MES; 2.10A {Escherichia coli} SCOP: b.49.2.3 c.1.6.1 PDB: 1ko0_A*
Probab=100.00 E-value=1.1e-57 Score=506.70 Aligned_cols=395 Identities=21% Similarity=0.273 Sum_probs=323.1
Q ss_pred CcCHHHHHHHhCCCCCCCCCCCCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcC
Q 005135 105 EIDLLKIVKKVSDPKSVGGLGLQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFG 184 (712)
Q Consensus 105 ~i~l~el~~~~~~~~~~~~~g~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G 184 (712)
..++.+|+++ ++||+|++|++.|++|+++|+ +|+ +++|++|||+++.|++.+.+.|
T Consensus 14 ~~~~~~l~~~-----------~~tP~~vidl~~l~~N~~~l~-~~~------------~i~~avKAn~~~~v~~~l~~~G 69 (425)
T 1knw_A 14 AENLLRLPAE-----------FGCPVWVYDAQIIRRQIAALK-QFD------------VVRFAQKACSNIHILRLMREQG 69 (425)
T ss_dssp HHHHHHHHHH-----------HCSSEEEEEHHHHHHHHHTTT-TSS------------EEEEEGGGCCCHHHHHHHHHTT
T ss_pred hhhHHHHHHh-----------hCCCEEEEEHHHHHHHHHHHh-hCC------------cceEeeecCCCHHHHHHHHHcC
Confidence 4579999998 999999999999999999998 762 7899999999999999999999
Q ss_pred CCCccceEecCHHHHHHHHHhcCCCCC----CcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcC
Q 005135 185 SQFRFGLEAGSKPELLLAMSCLCKGSP----EALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLN 260 (712)
Q Consensus 185 ~~~~~GlEvaS~~EL~~Al~~G~~~~p----~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g 260 (712)
+|++|+|.+|+..++++|+ ++ ++|++.++.|++++|+.|++ .|+ .++|||++||++|.+.+++
T Consensus 70 ----~g~~vas~~E~~~~~~~G~--~~~~~~~~Iv~~g~~k~~~~l~~a~~---~~i--~~~vds~~el~~l~~~a~~-- 136 (425)
T 1knw_A 70 ----VKVDSVSLGEIERALAAGY--NPQTHPDDIVFTADVIDQATLERVSE---LQI--PVNAGSVDMLDQLGQVSPG-- 136 (425)
T ss_dssp ----CEEEECSHHHHHHHHHTTC--CTTTCTTSEEEEESCCCHHHHHHHHH---HTC--CEEESSHHHHHHHHHHSTT--
T ss_pred ----CeEEEcCHHHHHHHHHcCC--CCCCCcCeEEEECCCCCHHHHHHHHH---cCC--EEEECCHHHHHHHHHhhhh--
Confidence 5999999999999999995 67 78999888999999999987 344 4899999999999887653
Q ss_pred CCceEEEEEeeCCC-CCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHH
Q 005135 261 VRPVIGARAKLRTK-HSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQI 339 (712)
Q Consensus 261 ~~~~IgLRVn~~~~-~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~ 339 (712)
.+++|||||+.. ++|.+.+||+..+|||++.+++.++++++++. .++ +.|||||+|||+ +.+.+.++++++.++
T Consensus 137 --~~v~lRv~~~~~~~~h~~i~tG~~~~RfG~~~~~~~~~~~~~~~~-~l~-l~Gl~~H~gs~~-~~~~~~~~~~~~~~~ 211 (425)
T 1knw_A 137 --HRVWLRVNPGFGHGHSQKTNTGGENSKHGIWYTDLPAALDVIQRH-HLQ-LVGIHMHIGSGV-DYAHLEQVCGAMVRQ 211 (425)
T ss_dssp --CEEEEEEECSCCSSCTTSCCSSSTTCCCSEEGGGHHHHHHHHHHT-TCE-EEEEECCCCCTT-CHHHHHHHHHHHHHH
T ss_pred --ccEEEEECCCCCCCCCcccccCCCCCCCcCCHHHHHHHHHHHHHC-CCC-EEEEEEECCCCC-CHHHHHHHHHHHHHH
Confidence 489999999875 44668899989999999999999999999998 677 999999999999 999998888887776
Q ss_pred HHHHHHcCCCCcEEEEcCCCCcCcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCcchhccccceE
Q 005135 340 YCELVRLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSIL 419 (712)
Q Consensus 340 ~~~L~~~G~~l~~IDIGGGlgv~Y~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPGRalvA~agvL 419 (712)
+.++ |+++++||+||||+++|...+. .+++++|++.|.+.++.++...+. .|++++||||++++++++|
T Consensus 212 ~~~~---G~~~~~ln~GGG~~~~y~~~~~-------~~d~~~~~~~~~~~~~~i~~~~~~-~~~~~~EpGr~~v~~ag~l 280 (425)
T 1knw_A 212 VIEF---GQDLQAISAGGGLSVPYQQGEE-------AVDTEHYYGLWNAAREQIARHLGH-PVKLEIEPGRFLVAQSGVL 280 (425)
T ss_dssp HHHH---TCCCSEEECCCCCCCCCSTTCC-------CCCHHHHHHHHHHHHHHHHHHHTS-CCEEEECCSHHHHGGGEEE
T ss_pred HHHh---CCCCcEEEeCCCcccCCCCCCC-------CCCHHHHHHHHHHHHHHHHHHhCC-CCEEEEcCChHHhhhceEE
Confidence 6544 9999999999999999953222 479999999888877777665542 4799999999999999999
Q ss_pred EEEEEEEEecCCCCCCCCcchhhHhhhchhhhHHHHHHHHHHHHHhhhhccCCCCccccccccccccccchhhhcCCcce
Q 005135 420 IFEAVSASVSRAAPVAMSPLGLQYLVEGLTEDARSDYTKMTTAALRAMEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFP 499 (712)
Q Consensus 420 Vt~Vi~vk~~~~~~~~~~~~~~~~lvdg~~~~~~~~y~~~~~~~~~g~~~~~~~~~~~Y~~N~Svf~SlpD~w~i~q~fP 499 (712)
+++|+++|+.++..++ ++|+ |+++..++ ++| ++.++
T Consensus 281 ~t~V~~vk~~~~~~~~--------~vd~----------------------G~~d~~~~-----~l~---------~~~~~ 316 (425)
T 1knw_A 281 ITQVRSVKQMGSRHFV--------LVDA----------------------GFNDLMRP-----AMY---------GSYHH 316 (425)
T ss_dssp EEEEEEEEEETTEEEE--------EESC----------------------CTTTSCHH-----HHH---------CCCCC
T ss_pred EEEEEEEEecCCcEEE--------EECC----------------------chhhccch-----hhh---------cccce
Confidence 9999999986542111 2232 23322211 111 23346
Q ss_pred eeecCCCCCCC----CeeeEeecccccCCCccccccCCC---cccCCccccCCCCCCCcccEEEeecccchhccccCCCC
Q 005135 500 IVPIHHLDERP----GVRGVLSDLTCDSDGKIDKFIGGG---TSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHN 572 (712)
Q Consensus 500 I~pl~rl~e~p----~~~~~l~G~TCdS~D~I~~fi~~~---~~LPl~~l~~G~~~~~~~d~L~~~~~GAYq~~m~s~fN 572 (712)
+.++.+..+.+ ..++.|+|++|+|+|++...+++. ..|| ++++| |+|+|+++|||+.+|+++||
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~v~G~~C~s~D~~~~d~~~~~~~~~lp--~~~~G-------D~l~~~~~GAY~~~~~s~fn 387 (425)
T 1knw_A 317 ISALAADGRSLEHAPTVETVVAGPLCESGDVFTQQEGGNVETRALP--EVKAG-------DYLVLHDTGAYGASMSSNYN 387 (425)
T ss_dssp EEEECTTCCCCTTCCEEEEEEECSSSSTTCBSSBCTTSCBCCEEEE--CCCTT-------CEEEEESCSSSSGGGCCCTT
T ss_pred eEecCCCCCccccCCceeEEEECCCCCCCCEEeecCCCCccceeCC--CCCCC-------CEEEEeCCCcchHHHHhHhh
Confidence 55664322222 378999999999999987621110 4566 89999 99999999999999999999
Q ss_pred CCCCCcEEEEEecCCCCeEEEEEcCCCCCHHHHHHhcCC
Q 005135 573 LFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVMQH 611 (712)
Q Consensus 573 lf~~p~~V~V~~~d~~g~~~i~r~~~g~t~~dvl~~~~~ 611 (712)
+|++|++|+++ + |+++++| +++|++|+++....
T Consensus 388 ~~~~p~~v~~~--~--~~~~~ir--~r~~~~d~~~~~~~ 420 (425)
T 1knw_A 388 SRPLLPEVLFD--N--GQARLIR--RRQTIEELLALELL 420 (425)
T ss_dssp TCCCCCEEEEE--T--TEEEEEE--CCCCHHHHHTTTCS
T ss_pred CCCCCeEEEEe--C--CcEEEEE--eCCCHHHHHHHHHh
Confidence 99999999997 3 5799999 78999999987653
No 13
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A*
Probab=100.00 E-value=5e-57 Score=501.28 Aligned_cols=399 Identities=21% Similarity=0.299 Sum_probs=329.2
Q ss_pred CCcCHHHHHHHhCCCCCCCCCCCCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHc
Q 005135 104 QEIDLLKIVKKVSDPKSVGGLGLQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKF 183 (712)
Q Consensus 104 ~~i~l~el~~~~~~~~~~~~~g~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~ 183 (712)
.++++.+|+++ ++||+|++|++.|++|+++|+++|+.. +++++|++|||+++.|++.+.+.
T Consensus 20 ~~~~~~~l~~~-----------~~tP~~vidl~~i~~N~~~l~~~~~~~--------~~~l~~avKan~~~~v~~~l~~~ 80 (425)
T 2qgh_A 20 HMFNYEELFQT-----------HKTPFYLYDFDKIKQAFLNYKEAFKGR--------KSLICYALKANSNLSILSLLAHL 80 (425)
T ss_dssp ---CHHHHHHH-----------CCSSEEEEEHHHHHHHHHHHHHTTCSS--------CEEEEEEGGGCCCHHHHHHHHHT
T ss_pred ccccHHHHHHh-----------hCCCEEEEEHHHHHHHHHHHHHhcCcC--------CCEEEEEeccCCCHHHHHHHHHc
Confidence 57899999999 999999999999999999999988631 46999999999999999999999
Q ss_pred CCCCccceEecCHHHHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCc
Q 005135 184 GSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRP 263 (712)
Q Consensus 184 G~~~~~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~ 263 (712)
| +|++|+|.+|++.++++|+ ++++|++.++.|+.++|+.|++ .|+. .++|||++||++|.+.+++.+++.
T Consensus 81 G----~g~~vas~~E~~~~~~~G~--~~~~i~~~g~~k~~~~i~~a~~---~gv~-~i~vds~~el~~l~~~a~~~~~~~ 150 (425)
T 2qgh_A 81 E----SGADCVSIGEIQRALKAGI--KPYRIVFSGVGKSAFEIEQALK---LNIL-FLNVESFMELKTIETIAQSLGIKA 150 (425)
T ss_dssp T----CEEEESSHHHHHHHHHTTC--CGGGEEECCTTCCHHHHHHHHH---TTCS-EEEECSHHHHHHHHHHHHHHTCCE
T ss_pred C----CeEEEeCHHHHHHHHHcCC--ChhHEEEcCCCCCHHHHHHHHH---CCCC-EEEeCCHHHHHHHHHHHHhcCCCc
Confidence 9 5999999999999999995 7788999888999999999987 4443 589999999999999998888889
Q ss_pred eEEEEEeeCCC-CCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHH
Q 005135 264 VIGARAKLRTK-HSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCE 342 (712)
Q Consensus 264 ~IgLRVn~~~~-~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~ 342 (712)
+|.||||++.. +++...+||++.+|||++++++.++++++++.+.|+ +.|||+|+|||..+++.+.++++.+.+++.+
T Consensus 151 ~v~lrvn~g~~~~~~~~~~tg~~~sRfG~~~~e~~~l~~~~~~~~~l~-l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~ 229 (425)
T 2qgh_A 151 RISIRINPNIDAKTHPYISTGLKENKFGVGEKEALEMFLWAKKSAFLE-PVSVHFHIGSQLLDLEPIIEASQKVAKIAKS 229 (425)
T ss_dssp EEEEEBCCCCCCCSCGGGBCCSTTSSSSBCHHHHHHHHHHHHHCSSEE-EEEEECCCBSSBCCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCCCCcccccCCCCCCCcCCHHHHHHHHHHHHhCCCcc-EEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999865 344566888899999999999999999999998888 9999999999998999999999999999999
Q ss_pred HHHcCCCCcEEEEcCCCCcCcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCcchhccccceEEEE
Q 005135 343 LVRLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFE 422 (712)
Q Consensus 343 L~~~G~~l~~IDIGGGlgv~Y~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPGRalvA~agvLVt~ 422 (712)
+++.|+++++||+|||||++|.++. .+++++|++.|...+. .. .|++++||||++++++++|+++
T Consensus 230 l~~~g~~~~~l~~GGG~~i~y~~~~--------~~~~~~~~~~v~~~i~----~~---~~~~~~EpGr~~~~~a~~l~t~ 294 (425)
T 2qgh_A 230 LIALGIDLRFFDVGGGIGVSYENEE--------TIKLYDYAQGILNALQ----GL---DLTIICEPGRSIVAESGELITQ 294 (425)
T ss_dssp HHHTTCCCCEEECCCCBCCCTTSCC--------CCCHHHHHHHHHHHTT----TC---CCEEEECCCHHHHTTTEEEEEE
T ss_pred HHhcCCCCCEEEECCCcCcCCCCCC--------CCCHHHHHHHHHHHHh----hc---CCEEEEcCchhhhhcceEEEEE
Confidence 9888999999999999999994321 3689999988877764 22 3789999999999999999999
Q ss_pred EEEEEecCCCCCCCCcchhhHhhhchhhhHHHHHHHHHHHHHhhhhccCCCCccccccccccccccchhhhcCCcceeee
Q 005135 423 AVSASVSRAAPVAMSPLGLQYLVEGLTEDARSDYTKMTTAALRAMEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVP 502 (712)
Q Consensus 423 Vi~vk~~~~~~~~~~~~~~~~lvdg~~~~~~~~y~~~~~~~~~g~~~~~~~~~~~Y~~N~Svf~SlpD~w~i~q~fPI~p 502 (712)
|+++|+.++..++ ++|+ |+++..++ ++| +..+++++
T Consensus 295 V~~vk~~~~~~~~--------~vd~----------------------G~~d~~~~-----~l~---------~~~~~~~~ 330 (425)
T 2qgh_A 295 VLYEKKAQNKRFV--------IVDA----------------------GMNDFLRP-----SLY---------HAKHAIRV 330 (425)
T ss_dssp EEEEEC--CCCEE--------EESC----------------------CTTTCCHH-----HHH---------CCCCCEEE
T ss_pred EEEEEecCCCEEE--------EEcC----------------------chhcccch-----hhc---------CCcceeee
Confidence 9999986542222 2332 33332221 111 12234555
Q ss_pred cCCCCCCCCeeeEeecccccCCCccccccCCCcccCCccccCCCCCCCcccEEEeecccchhccccCCCCCCCCCcEEEE
Q 005135 503 IHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 582 (712)
Q Consensus 503 l~rl~e~p~~~~~l~G~TCdS~D~I~~fi~~~~~LPl~~l~~G~~~~~~~d~L~~~~~GAYq~~m~s~fNlf~~p~~V~V 582 (712)
++..+.++..++.|+|++|+|.|.+.. +..|| ++++| |+|.|+++|||+.+|+++||+|++|++|.+
T Consensus 331 ~~~~~~~~~~~~~i~G~~C~s~D~~~~----d~~lp--~~~~G-------D~v~~~~~GAY~~~~~s~fn~~~~p~~v~~ 397 (425)
T 2qgh_A 331 ITPSKGREISPCDVVGPVCESSDTFLK----DAHLP--ELEPG-------DKIAIEKVGAYGSSMASQYNSRPKLLELAL 397 (425)
T ss_dssp CSCC---CCEEEEEECSSSSTTCEEEE----EEEEC--CCCTT-------CEEEECSCSSSSGGGCCCTTTCCCCEEEEE
T ss_pred ccCCCCCcceEEEEECCCcCCCcEecc----cccCC--CCCCC-------CEEEEeCCCCchhhhhccccCCCCCeEEEE
Confidence 521022225789999999999999875 45566 89999 999999999999999999999999999998
Q ss_pred EecCCCCeEEEEEcCCCCCHHHHHHhcC
Q 005135 583 LQSDGPHSFAVTRAMPGPSCGDVLRVMQ 610 (712)
Q Consensus 583 ~~~d~~g~~~i~r~~~g~t~~dvl~~~~ 610 (712)
+ + ++++++| +++|++|+++...
T Consensus 398 ~--~--~~~~~ir--~re~~~dl~~~~~ 419 (425)
T 2qgh_A 398 E--D--HKIRVIR--KREALEDLWRLEE 419 (425)
T ss_dssp C--C---CEEEEE--CCCCGGGGTGGGT
T ss_pred E--C--CcEEEEE--ecCCHHHHHHhHh
Confidence 6 3 4689999 8999999998753
No 14
>2oo0_A ODC, ornithine decarboxylase; beta-alpha barrel, sheet, lyase; HET: PLP; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.1e-55 Score=496.56 Aligned_cols=391 Identities=19% Similarity=0.241 Sum_probs=315.8
Q ss_pred CCcCHHHHHHHhCCCCCCCCCCCCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHc
Q 005135 104 QEIDLLKIVKKVSDPKSVGGLGLQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKF 183 (712)
Q Consensus 104 ~~i~l~el~~~~~~~~~~~~~g~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~ 183 (712)
++.++.+++++...... ..+++||+||+|++.|++|+++|+++|+ +.+++|++|||+++.|++.+.++
T Consensus 26 ~~~~~~~~i~~~~~~~~--~~~~~tP~~viDl~~l~~n~~~l~~~~~----------~~~i~yavKAn~~~~v~~~l~~~ 93 (471)
T 2oo0_A 26 EGFTAKDILDQKINEVS--SSDDKDAFYVADLGDILKKHLRWLKALP----------RVTPFYAVKCNDSKAIVKTLAAT 93 (471)
T ss_dssp TTCCHHHHHHHHHHHTT--TSSCCCCEEEEEHHHHHHHHHHHHHHCT----------TEEEEEEGGGCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhh--cCCCCCcEEEEEHHHHHHHHHHHHHhCC----------CCeEEEEEeeCCCHHHHHHHHHc
Confidence 45577777766442211 1148999999999999999999999885 36999999999999999999999
Q ss_pred CCCCccceEecCHHHHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCc
Q 005135 184 GSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRP 263 (712)
Q Consensus 184 G~~~~~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~ 263 (712)
| .|+||+|.+|+..++++|+ ++++|+++++.|++++|++|++ .|+. .++|||++||++|.+.++ +.
T Consensus 94 G----~g~dvaS~~E~~~~~~aG~--~~~~iv~~g~~k~~~ei~~a~~---~gv~-~~~vds~~el~~l~~~~~----~~ 159 (471)
T 2oo0_A 94 G----TGFDCASKTEIQLVQSLGV--PPERIIYANPCKQVSQIKYAAN---NGVQ-MMTFDSEVELMKVARAHP----KA 159 (471)
T ss_dssp T----CEEEECSHHHHHHHHHTTC--CGGGEEECCSSCCHHHHHHHHH---TTCC-EEEECSHHHHHHHHHHCT----TC
T ss_pred C----CcEEEeCHHHHHHHHHcCC--ChhhEEEeCCCCCHHHHHHHHH---CCCC-EEEECCHHHHHHHHHhCC----CC
Confidence 9 5999999999999999995 7889999999999999999986 4554 699999999999987653 47
Q ss_pred eEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHH
Q 005135 264 VIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCEL 343 (712)
Q Consensus 264 ~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L 343 (712)
+|+||||++... .++...+|||++.+++.++++++++. .++ +.|||||+|||+.+.+.+.++++++.++++.+
T Consensus 160 ~V~lRvn~g~~~-----~~~~~~~RfG~~~~~~~~~~~~~~~~-~l~-l~Glh~H~gs~~~~~~~~~~a~~~~~~~~~~~ 232 (471)
T 2oo0_A 160 KLVLRIATDDSK-----AVCRLSVKFGATLRTSRLLLERAKEL-NID-VVGVSFHVGSGCTDPETFVQAISDARCVFDMG 232 (471)
T ss_dssp EEEEEECCCCTT-----SSBCCTTTSCBCHHHHHHHHHHHHHT-TCE-EEEEEECCCBSCCCTHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCC-----CCCCCCCCCCCCHHHHHHHHHHHHhC-CCc-EEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 899999986432 35667899999999999999999988 567 99999999999999999999999999999988
Q ss_pred HHcCCCCcEEEEcCCCCcCcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCcchhccccceEEEEE
Q 005135 344 VRLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEA 423 (712)
Q Consensus 344 ~~~G~~l~~IDIGGGlgv~Y~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPGRalvA~agvLVt~V 423 (712)
++.|+++++||+||||++.|+. ++++++|++.|...+++++... +.++|++||||++++++++|+++|
T Consensus 233 ~~~G~~~~~ldiGGG~~~~~~~----------~~~~~~~~~~i~~~l~~~~p~~--~~~~li~EpGR~~v~~ag~l~t~V 300 (471)
T 2oo0_A 233 AEVGFSMYLLDIGGGFPGSEDV----------KLKFEEITGVINPALDKYFPSD--SGVRIIAEPGRYYVASAFTLAVNI 300 (471)
T ss_dssp HHHTCCCCEEECCCCCCSSSSS----------SSCHHHHHHHHHHHHHHHSCGG--GTCEEEECCSHHHHGGGEEEEEEE
T ss_pred HHcCCCCCEEEECCCcCCCCCC----------CCCHHHHHHHHHHHHHHHhccc--CCcEEEecCccceecCcEEEEEEE
Confidence 8899999999999999886531 4789999999999999886532 247999999999999999999999
Q ss_pred EEEEecCCCCCCCCcchhhHhhhchhhhHHHHHHHHHHHHHhhhhccCCCCccccccccccccccchhhhcCCcc--eee
Q 005135 424 VSASVSRAAPVAMSPLGLQYLVEGLTEDARSDYTKMTTAALRAMEIGASDPVRTYHVNLSIFTSIPDYWAIGQLF--PIV 501 (712)
Q Consensus 424 i~vk~~~~~~~~~~~~~~~~lvdg~~~~~~~~y~~~~~~~~~g~~~~~~~~~~~Y~~N~Svf~SlpD~w~i~q~f--PI~ 501 (712)
+++|+..... .. .+... .......+|+++.+++.++...+. +..+ |++
T Consensus 301 ~~vK~~~~~~-v~--------y~~~~--------------------~~~~~~~~~~i~~G~~~~~~~~L~-~~~~~~~vl 350 (471)
T 2oo0_A 301 IAKKIVLKEQ-TG--------SDDED--------------------ESSEQTFMYYVNDGVYGSFNCILY-DHAHVKPLL 350 (471)
T ss_dssp EEEEEEC------------------------------------------CCEEEEEESCCTTTGGGHHHH-SCCCCCCEE
T ss_pred EEEEecCccc-cc--------ccccc--------------------ccCCceEEEEEECCcccchhhHhh-ccCcceeee
Confidence 9999865311 10 00000 000112467799998887765432 2223 333
Q ss_pred ecCC-CCCCCCeeeEeecccccCCCccccccCCCcccCCccccCCCCCCCcccEEEeecccchhccccCCCCCCCCCcEE
Q 005135 502 PIHH-LDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVV 580 (712)
Q Consensus 502 pl~r-l~e~p~~~~~l~G~TCdS~D~I~~fi~~~~~LPl~~l~~G~~~~~~~d~L~~~~~GAYq~~m~s~fNlf~~p~~V 580 (712)
+++ ..+.+..++.|+|++|+|+|++.. +..|| ++++| |+|+|+++|||+.+|+++||+|++|++|
T Consensus 351 -~~~~~~~~~~~~~~I~G~~C~s~D~l~~----d~~lp--~l~~G-------D~l~~~~~GAY~~s~~s~fN~~~~p~~v 416 (471)
T 2oo0_A 351 -QKRPKPDEKYYSSSIWGPTCDGLDRIVE----RCDLP--EMHVG-------DWMLFENMGAYTVAAASTFNGFQRPTIY 416 (471)
T ss_dssp -SSCCCTTCCEEEEEEECSSSCTTCEEEE----EEEEE--CCCTT-------CEEEECSCCSSSGGGCCCGGGCCCCEEE
T ss_pred -ccCCCCCCCeeEEEEECCCCCCCCEEee----ccCCC--CCCCC-------CEEEEeCCCcchhhhhccccCCCCCeEE
Confidence 222 122445789999999999999875 45566 79999 9999999999999999999999999999
Q ss_pred EEE
Q 005135 581 RVL 583 (712)
Q Consensus 581 ~V~ 583 (712)
++.
T Consensus 417 ~~~ 419 (471)
T 2oo0_A 417 YVM 419 (471)
T ss_dssp EEE
T ss_pred EEe
Confidence 886
No 15
>3btn_A Antizyme inhibitor 1; TIM-like A/B barrel domain and A sheet domain, structural genomics, israel structural proteomics center, ISPC; 2.05A {Mus musculus}
Probab=100.00 E-value=8.7e-57 Score=502.86 Aligned_cols=409 Identities=18% Similarity=0.206 Sum_probs=317.3
Q ss_pred cCCcCHHHHHHHhCCCCCCCCCCCCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHH
Q 005135 103 HQEIDLLKIVKKVSDPKSVGGLGLQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVK 182 (712)
Q Consensus 103 ~~~i~l~el~~~~~~~~~~~~~g~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~ 182 (712)
.+++++.++++++..+. ...++||+||+|++.|++|+++|+++|+ +++++|++|||+++.|++.+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~---~~~~~tP~~vid~~~l~~n~~~~~~~~~----------~~~i~yavKAn~~~~v~~~l~~ 82 (448)
T 3btn_A 16 DEGTNLGNVIDNYVYEH---TLTGKNAFFVGDLGKIVKKHSQWQTVVA----------QIKPFYTVKCNSTPAVLEILAA 82 (448)
T ss_dssp CTTCCHHHHHHHHHHHH---HHSSCCCEEEEEHHHHHHHHHHHHHHCT----------TEEEEEEGGGCCCHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHhc---ccCCCCCEEEEeHHHHHHHHHHHHHhCC----------CCeEEEEeeeCCCHHHHHHHHH
Confidence 46789999998865441 0017999999999999999999999885 3699999999999999999999
Q ss_pred cCCCCccceEecCHHHHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCC
Q 005135 183 FGSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVR 262 (712)
Q Consensus 183 ~G~~~~~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~ 262 (712)
+| .|+||+|.+|++.++++|+ ++++|+++++.|++++|++|++ .|+. .++|||++||++|.+.++ +
T Consensus 83 ~G----~g~~vaS~~E~~~~~~aG~--~~~~iv~~g~~k~~~ei~~a~~---~gv~-~~~vds~~el~~l~~~~~----~ 148 (448)
T 3btn_A 83 LG----TGFACSSKNEMALVQELGV--SPENIIFTSPCKQVSQIKYAAK---VGVN-IMTCDNEIELKKIARNHP----N 148 (448)
T ss_dssp HT----CEEEESSHHHHHHHHHTTC--CGGGEEECCSSCCHHHHHHHHH---HTCC-EEEECSHHHHHHHHHHCT----T
T ss_pred cC----CcEEEeCHHHHHHHHHcCC--ChhhEEEcCCCCCHHHHHHHHH---cCCC-EEEeCCHHHHHHHHHhCC----C
Confidence 99 5999999999999999995 7889999999999999999987 3454 699999999999987643 5
Q ss_pred ceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHH
Q 005135 263 PVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCE 342 (712)
Q Consensus 263 ~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~ 342 (712)
++|+||||++... .++...+|||++.+++.++++++++. .++ +.|||||+|||+.+.+.+.++++++.++++.
T Consensus 149 ~~v~lRin~g~~~-----~~~~~~~RfG~~~~~~~~~~~~~~~~-~l~-~~Gl~~H~gs~~~d~~~~~~~~~~~~~~~~~ 221 (448)
T 3btn_A 149 AKVLLHIATEDNI-----GGEDGNMKFGTTLKNCRHLLECAKEL-DVQ-IIGVKFHVSSACKEYQVYVHALSDARCVFDM 221 (448)
T ss_dssp CEEEEEBCCCC-------------CCCCBCHHHHHHHHHHHHHH-TCE-EEEEECCCCTTCCCTTHHHHHHHHHHHHHHH
T ss_pred CeEEEEEecCCCc-----cCCCCCCcCCCCHHHHHHHHHHHHhC-CCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
Confidence 7899999987543 24567899999999999999999888 577 9999999999999999999999999899988
Q ss_pred HHHcCCCCcEEEEcCCCCcCcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCcchhccccceEEEE
Q 005135 343 LVRLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFE 422 (712)
Q Consensus 343 L~~~G~~l~~IDIGGGlgv~Y~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPGRalvA~agvLVt~ 422 (712)
+++.|+++++||+||||+..| +++++|++.|...++++++.. ..++|++||||++++++++|+++
T Consensus 222 ~~~~G~~~~~ldiGGG~~~~~-------------~~~~~~~~~v~~~i~~~~p~~--~~~~l~~EpGR~~v~~ag~l~t~ 286 (448)
T 3btn_A 222 AGEFGFTMNMLDIGGGFTGTE-------------IQLEEVNHVISPLLDIYFPEG--SGIQIISEPGSYYVSSAFTLAVN 286 (448)
T ss_dssp HHHTTCCCCEEECCSCCCSCH-------------HHHHHHHHHHHHHHHHHSCTT--SCCEEEECCSHHHHTTTEEEEEE
T ss_pred HHHcCCCCCEEEeCCCcCCCC-------------CCHHHHHHHHHHHHHHHhccc--CCcEEEEeCCcceeeeeEEEEEE
Confidence 889999999999999995332 368999999999999876431 24799999999999999999999
Q ss_pred EEEEEecCCCCCCCCcchhhHhhhchhhhHHHHHHHHHHHHHhhhhccCCCCccccccccccccccchhhhcCCcceeee
Q 005135 423 AVSASVSRAAPVAMSPLGLQYLVEGLTEDARSDYTKMTTAALRAMEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVP 502 (712)
Q Consensus 423 Vi~vk~~~~~~~~~~~~~~~~lvdg~~~~~~~~y~~~~~~~~~g~~~~~~~~~~~Y~~N~Svf~SlpD~w~i~q~fPI~p 502 (712)
|+++|+......... +..+. ......+|+++.+++.+++..+. +..+|+..
T Consensus 287 V~~vK~~~~g~~vsy--g~~~~--------------------------~~~~~~~~~i~~G~~d~~~~~l~-~~~~~~~v 337 (448)
T 3btn_A 287 IIAKKVVENDKFSSG--VEKNG--------------------------SDEPAFVYYMNDGVYGSFASKLS-EDLNTIPE 337 (448)
T ss_dssp EEEEEEC---------------------------------------------CEEEEESCCTTTTTGGGGC-----CCCE
T ss_pred EEEEEeccccccccc--ccccc--------------------------cCCceEEEEEccccccccchhhh-ccCcceee
Confidence 999998642110000 00000 00011246677777776655432 22233322
Q ss_pred -cCCC-CCCCCeeeEeecccccCCCccccccCCCcccCCccccCCCCCCCcccEEEeecccchhccccCCCCCCCCCcEE
Q 005135 503 -IHHL-DERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVV 580 (712)
Q Consensus 503 -l~rl-~e~p~~~~~l~G~TCdS~D~I~~fi~~~~~LPl~~l~~G~~~~~~~d~L~~~~~GAYq~~m~s~fNlf~~p~~V 580 (712)
+++. .+.+..++.|+|++|+|+|++.. +..|| ++++| |+|+|+++|||+.+|+++||+|++|++|
T Consensus 338 l~~~~~~~~~~~~~~v~G~~C~s~D~l~~----d~~lp--~l~~G-------D~l~~~~~GAY~~~~~s~fN~~~~p~~v 404 (448)
T 3btn_A 338 VHKKYKEDEPLFTSSLWGPSCDELDQIVE----SCLLP--ELNVG-------DWLIFDNMGADSFHEPSAFNDFQRPAIY 404 (448)
T ss_dssp ECCC-----CEEEEEEECTTCSTTCEEEE----EEEEE--CCCTT-------CEEEESSCCSSCCCCCCGGGTTCCCEEE
T ss_pred eccCCCCCCCceEEEEECCCCCCCCEEee----ccccC--CCCCC-------CEEEEcCCCCCchhhcccccCCCCCeEE
Confidence 2321 12345789999999999999875 45566 79999 9999999999999999999999999999
Q ss_pred EEEecCCCCeEEEEEcCCCCCHHHHHH
Q 005135 581 RVLQSDGPHSFAVTRAMPGPSCGDVLR 607 (712)
Q Consensus 581 ~V~~~d~~g~~~i~r~~~g~t~~dvl~ 607 (712)
++. .+ +.++++| +++|++|+..
T Consensus 405 ~~~-~~--~~~~~ir--~~~~~~~~~~ 426 (448)
T 3btn_A 405 FMM-SF--SDWYEMQ--DAGITSDAMM 426 (448)
T ss_dssp EEE-EH--HHHHHHH--HTTGGGSGGG
T ss_pred EEE-cC--CceeEEE--ecccccchhc
Confidence 986 22 4678887 6788888743
No 16
>1f3t_A ODC, ornithine decarboxylase; beta-alpha-barrel, modified greek KEY beta-sheet, lyase; HET: PLP; 2.00A {Trypanosoma brucei} SCOP: b.49.2.3 c.1.6.1 PDB: 1qu4_A* 1szr_C* 2tod_A* 1njj_A*
Probab=100.00 E-value=3.7e-54 Score=478.48 Aligned_cols=391 Identities=19% Similarity=0.237 Sum_probs=307.4
Q ss_pred CCcCHHHHHHHhCCCCCCCCCCCCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHc
Q 005135 104 QEIDLLKIVKKVSDPKSVGGLGLQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKF 183 (712)
Q Consensus 104 ~~i~l~el~~~~~~~~~~~~~g~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~ 183 (712)
+++++.+++++...... ..++||+|++|++.|++|+++|+++|+ +.+++|++|||+++.|++.+.+.
T Consensus 17 ~~~~~~~~~~~~~~~~~---~~~~tP~~vidl~~l~~n~~~~~~~~~----------~~~~~~avKAn~~~~v~~~l~~~ 83 (425)
T 1f3t_A 17 EGFNTRDALCKKISMNT---CDEGDPFFVADLGDIVRKHETWKKCLP----------RVTPFYAVKCNDDWRVLGTLAAL 83 (425)
T ss_dssp CCSSHHHHHHHHCC---------CCCEEEEEHHHHHHHHHHHHHHCT----------TEEEEEEGGGCCCHHHHHHHHHT
T ss_pred cCCcHHHHHHHHHHhcc---cCCCCcEEEEeHHHHHHHHHHHHHhCC----------CCeEEEEeeeCCCHHHHHHHHHc
Confidence 67899999999765421 127999999999999999999998875 36999999999999999999999
Q ss_pred CCCCccceEecCHHHHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCc
Q 005135 184 GSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRP 263 (712)
Q Consensus 184 G~~~~~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~ 263 (712)
| .|++|+|.+|++.++++|+ ++++|++++++|++++|+.|++ .|+. .++|||++||++|.+.++ +.
T Consensus 84 G----~g~~vas~~E~~~~~~~G~--~~~~iv~~g~~k~~~~l~~a~~---~gv~-~~~vds~~el~~l~~~~~----~~ 149 (425)
T 1f3t_A 84 G----TGFDCASNTEIQRVRGIGV--PPEKIIYANPCKQISHIRYARD---SGVD-VMTFDCVDELEKVAKTHP----KA 149 (425)
T ss_dssp T----CEEEECSHHHHHHHHHTTC--CGGGEEECCSSCCHHHHHHHHH---TTCC-EEEECSHHHHHHHHHHCT----TC
T ss_pred C----CcEEEeCHHHHHHHHHcCC--ChhhEEEcCCCCCHHHHHHHHH---CCCC-EEEeCCHHHHHHHHHhCC----CC
Confidence 9 5999999999999999995 7889999999999999999987 4554 599999999999987653 47
Q ss_pred eEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHH
Q 005135 264 VIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCEL 343 (712)
Q Consensus 264 ~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L 343 (712)
+|.|||+++.. .+++...+|||++.+++.++++.+++. .++ +.|||||+|||+.+.+.+.++++++.++++.+
T Consensus 150 ~v~lrid~g~~-----~~~~~~~~RfG~~~~~~~~~~~~~~~~-~l~-~~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~~ 222 (425)
T 1f3t_A 150 KMVLRISTDDS-----LARCRLSVKFGAKVEDCRFILEQAKKL-NID-VTGVSFHVGSGSTDASTFAQAISDSRFVFDMG 222 (425)
T ss_dssp EEEEEBCC---------------CCSCBCHHHHHHHHHHHHHT-TCE-EEEEECCCCSCCSCTHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCC-----CccCCCCCcCCCCHHHHHHHHHHHHhC-CCe-EEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 89999997643 245667899999999999999999887 567 99999999999999999999999999999888
Q ss_pred HHcCCCCcEEEEcCCCCcCcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCcchhccccceEEEEE
Q 005135 344 VRLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEA 423 (712)
Q Consensus 344 ~~~G~~l~~IDIGGGlgv~Y~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPGRalvA~agvLVt~V 423 (712)
++.|+++++||+||||++.++. ++++++|++.|...+..+++.. +.++|++||||++++++++|+++|
T Consensus 223 ~~~G~~~~~l~iGGG~~~~~~~----------~~~~~~~~~~vr~~i~~~~~~~--~~~~l~~EpGR~~v~~a~~l~t~V 290 (425)
T 1f3t_A 223 TELGFNMHILDIGGGFPGTRDA----------PLKFEEIAGVINNALEKHFPPD--LKLTIVAEPGRYYVASAFTLAVNV 290 (425)
T ss_dssp HHTTCCCCEEECCCCCCSSTTS----------SSCHHHHHHHHHHHHHHHSCCC--TTCEEEECCSHHHHGGGEEEEEEE
T ss_pred HHcCCCCCEEEeCCCcCCCCCC----------CCCHHHHHHHHHHHHHHhcCcC--CCcEEEEeCCceeeeeeEEEEEEE
Confidence 8899999999999999876521 4789999999999999885431 347999999999999999999999
Q ss_pred EEEEecCCCCCCCCcchhhHhhhchhhhHHHHHHHHHHHHHhhhhccCCCCccccccccccccccchhhhcCCccee-ee
Q 005135 424 VSASVSRAAPVAMSPLGLQYLVEGLTEDARSDYTKMTTAALRAMEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPI-VP 502 (712)
Q Consensus 424 i~vk~~~~~~~~~~~~~~~~lvdg~~~~~~~~y~~~~~~~~~g~~~~~~~~~~~Y~~N~Svf~SlpD~w~i~q~fPI-~p 502 (712)
+++|+.+.....+ + +..+ ......+|+++.+++.+++..+. +..+++ +.
T Consensus 291 ~~vK~~~~g~~~v-~-g~~~---------------------------~~~~~~~~~i~~G~~d~~~~~l~-~~~~~~~vl 340 (425)
T 1f3t_A 291 IAKKVTPGVQTDV-G-AHAE---------------------------SNAQSFMYYVNDGVYGSFNCILY-DHAVVRPLP 340 (425)
T ss_dssp EEEEEC--------------------------------------------CCEEEEESCCTTTGGGHHHH-SCCCCCCEE
T ss_pred EEEEecccccccc-c-cccc---------------------------cCcceEEEEEeccccccchhhhh-cccccceee
Confidence 9999864210000 0 0000 00112567788888877765542 222222 22
Q ss_pred cCCC-CCCCCeeeEeecccccCCCccccccCCCcccCCccccCCCCCCCcccEEEeecccchhccccCCCCCCCCCcEEE
Q 005135 503 IHHL-DERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVR 581 (712)
Q Consensus 503 l~rl-~e~p~~~~~l~G~TCdS~D~I~~fi~~~~~LPl~~l~~G~~~~~~~d~L~~~~~GAYq~~m~s~fNlf~~p~~V~ 581 (712)
+++. .+.+..++.|+|++|+|.|++.. +..|| ++++| |+|+|+++|||+.+|+++||+|++|.+++
T Consensus 341 ~~~~~~~~~~~~~~i~G~~C~s~D~~~~----d~~lp--~~~~G-------D~v~~~~~GAY~~s~~s~fn~~~~p~v~~ 407 (425)
T 1f3t_A 341 QREPIPNEKLYPSSVWGPTCDGLDQIVE----RYYLP--EMQVG-------EWLLFEDMGAYTVVGTSSFNGFQSPTIYY 407 (425)
T ss_dssp CSCCCTTCCEEEEEEECSSSCTTCEEEE----EEEEE--CCCTT-------CEEEECSCCSSSGGGCCCGGGCCCCEEEE
T ss_pred ecCCCCCCCeeEEEEEcCCcCCCCEecc----cccCC--CCCCC-------CEEEEcCCCCCchhhcccccCCCCCEEEE
Confidence 2321 12345789999999999999876 44565 79999 99999999999999999999999998887
Q ss_pred EE
Q 005135 582 VL 583 (712)
Q Consensus 582 V~ 583 (712)
+.
T Consensus 408 ~~ 409 (425)
T 1f3t_A 408 VV 409 (425)
T ss_dssp EC
T ss_pred Ee
Confidence 75
No 17
>2yxx_A Diaminopimelate decarboxylase; TM1517, TIM beta/alpha barrel fold, lyase, structural genomi NPPSFA; HET: PLP; 1.70A {Thermotoga maritima}
Probab=100.00 E-value=1.4e-53 Score=467.56 Aligned_cols=380 Identities=23% Similarity=0.313 Sum_probs=309.5
Q ss_pred HHHHHHHhCCCCCCCCCCCCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCC
Q 005135 108 LLKIVKKVSDPKSVGGLGLQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQF 187 (712)
Q Consensus 108 l~el~~~~~~~~~~~~~g~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~ 187 (712)
+.+|+++ ++||+|++|++.|++|+++|+++++. .+.+++|++|||+++.|++.+.+.|
T Consensus 4 ~~~l~~~-----------~~tP~~vidl~~l~~N~~~l~~~~~~--------~~~~i~~avKAn~~~~v~~~l~~~G--- 61 (386)
T 2yxx_A 4 LRKVAEI-----------HGTPTYVYFEETLRKRSRLVKEVFEG--------VNLLPTFAVKANNNPVLLKILREEG--- 61 (386)
T ss_dssp HHHHHHH-----------HCSSEEEEEHHHHHHHHHHHHHHTTT--------SCEEEEEEGGGCCCHHHHHHHHHTT---
T ss_pred HHHHHHh-----------cCCCEEEEEHHHHHHHHHHHHHhhcc--------CCceEEEEEeeCCCHHHHHHHHHcC---
Confidence 6778877 89999999999999999999998863 1469999999999999999999999
Q ss_pred ccceEecCHHHHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEE
Q 005135 188 RFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGA 267 (712)
Q Consensus 188 ~~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgL 267 (712)
+|++|+|.+|+..++++|+ ++++|++.++.|++++|+.|++ .|+. .++|||++||++|.+.+++ +.++.|
T Consensus 62 -~g~~vas~~E~~~~~~~G~--~~~~Il~~~~~k~~~~l~~a~~---~~v~-~~~vds~~el~~l~~~a~~---~~~v~l 131 (386)
T 2yxx_A 62 -FGMDVVTKGELLAAKLAGV--PSHTVVWNGNGKSRDQMEHFLR---EDVR-IVNVDSFEEMEIWRELNPE---GVEYFI 131 (386)
T ss_dssp -CEEEECSHHHHHHHHHTTC--CGGGEEECCSCCCHHHHHHHHH---TTCC-EEEECCHHHHHHHHHHCCT---TCEEEE
T ss_pred -CeEEEcCHHHHHHHHHcCC--ChhhEEEeCCCCCHHHHHHHHH---CCCC-EEEeCCHHHHHHHHHhcCc---CCeEEE
Confidence 5999999999999999995 7778999999999999999987 3432 6999999999999887654 478999
Q ss_pred EEeeCCCCC-CCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHc
Q 005135 268 RAKLRTKHS-GHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRL 346 (712)
Q Consensus 268 RVn~~~~~~-~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~ 346 (712)
|||++.... |.+.+||...+|||++.++ .++++ .+.+.++ +.|||+|+|||..+.+.+.++++++.+++.++
T Consensus 132 rv~~~~~~~~h~~i~tG~~~~RfG~~~~~-~~~~~--~~~~~l~-~~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l--- 204 (386)
T 2yxx_A 132 RVNPEVDAKTHPHISTGLKKHKFGIPLED-LDSFM--ERFRSMN-IRGLHVHIGSQITRVEPFVEAFSKVVRASERY--- 204 (386)
T ss_dssp EEECCCCTTTSHHHHHHHHHSSSSEEGGG-HHHHH--HHHTTSC-EEEEECCCCSSBCCSHHHHHHHHHHHHHHHHH---
T ss_pred EECCCCCCCCCcccccCCCCCCCCCChhH-HHHHh--hccCCCc-EEEEEEECCCCCCCHHHHHHHHHHHHHHHHhC---
Confidence 999987543 4567787667999999988 88888 4566677 99999999999988888888888887777766
Q ss_pred CCCCcEEEEcCCCCcCcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCcchhccccceEEEEEEEE
Q 005135 347 GANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEAVSA 426 (712)
Q Consensus 347 G~~l~~IDIGGGlgv~Y~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPGRalvA~agvLVt~Vi~v 426 (712)
+++++|+||||+++|.++ .++++++++.|...+..+ |++++||||++++++++|+++|+++
T Consensus 205 --~~~~~n~GGG~~~~~~~~---------~~~~~~~~~~vr~~i~~y--------~~~~~epGr~~~~~a~~l~t~V~~v 265 (386)
T 2yxx_A 205 --GFEEINIGGGWGINYSGE---------ELDLSSYREKVVPDLKRF--------KRVIVEIGRYIVAPSGYLLLRVVLV 265 (386)
T ss_dssp --TCSEEECCCCBCCCSSSC---------CCCHHHHHHHTGGGGTTC--------SEEEEEECHHHHGGGEEEEEEEEEE
T ss_pred --CCCEEEECCCcCcCCCCC---------CCCHHHHHHHHHHHHHhC--------CeEEecCcceeeccccEEEEEEEEE
Confidence 689999999999999632 368889988876665431 3899999999999999999999999
Q ss_pred EecCCCCCCCCcchhhHhhhchhhhHHHHHHHHHHHHHhhhhccCCCCccccccccccccccchhhhcCCcceeeecCCC
Q 005135 427 SVSRAAPVAMSPLGLQYLVEGLTEDARSDYTKMTTAALRAMEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHHL 506 (712)
Q Consensus 427 k~~~~~~~~~~~~~~~~lvdg~~~~~~~~y~~~~~~~~~g~~~~~~~~~~~Y~~N~Svf~SlpD~w~i~q~fPI~pl~rl 506 (712)
|+.++...+ ++|+ |+.+..++ ++| +..+|++++++.
T Consensus 266 k~~~g~~~~--------~vd~----------------------G~~d~~~~-----~l~---------~~~~~~~~i~~~ 301 (386)
T 2yxx_A 266 KRRHNKAFV--------VVDG----------------------GMNVLIRP-----ALY---------SAYHRIFVLGKQ 301 (386)
T ss_dssp EEETTEEEE--------EESC----------------------CTTTCCHH-----HHT---------CCCCCEEETTCC
T ss_pred EecCCcEEE--------EEeC----------------------ccccccch-----HHh---------cccCceEeccCC
Confidence 986442111 2232 23222111 011 233466677643
Q ss_pred CCCCCeeeEeecccccCCCccccccCCCcccCCccccCCCCCCCcccEEEeecccchhccccCCCCCCCCCcEEEEEecC
Q 005135 507 DERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVLQSD 586 (712)
Q Consensus 507 ~e~p~~~~~l~G~TCdS~D~I~~fi~~~~~LPl~~l~~G~~~~~~~d~L~~~~~GAYq~~m~s~fNlf~~p~~V~V~~~d 586 (712)
+ +..++.|+|++|+|.|.+.. +..+| ++++| |+|.|+++|||+.+|+++||+|++|.+|.+. .+
T Consensus 302 ~--~~~~~~i~G~~C~~~D~~~~----d~~lp--~~~~G-------D~v~~~~~GAY~~~~~s~fn~~~~p~~~~~~-~~ 365 (386)
T 2yxx_A 302 G--KEMRADVVGPLCESGDVIAY----DRELP--EVEPG-------DIIAVENAGAYGYTMSNNYNSTTRPAEVLVR-EN 365 (386)
T ss_dssp C--CSEEEEEECSSSSTTCEEEE----EEEES--CCCTT-------CEEEESSCSSSSGGGCCCTTTCCCCEEEEEC-TT
T ss_pred C--CceEEEEEcCCCCCCCEEee----ccccC--CCCCC-------CEEEEeCCCCchHHHhhhhhCCCCCcEEEEE-CC
Confidence 2 26789999999999999875 44566 78999 9999999999999999999999999999995 12
Q ss_pred CCCeEEEEEcCCCCCHHHHHHhc
Q 005135 587 GPHSFAVTRAMPGPSCGDVLRVM 609 (712)
Q Consensus 587 ~~g~~~i~r~~~g~t~~dvl~~~ 609 (712)
|+++++| +++|++|+++..
T Consensus 366 --~~~~~ir--~~~~~~d~~~~~ 384 (386)
T 2yxx_A 366 --GRISLIR--RRETEMDIFKDV 384 (386)
T ss_dssp --SCEEEEE--CCCCHHHHTTTC
T ss_pred --CeEEEEE--ecCCHHHHHhhh
Confidence 5799998 789999998764
No 18
>2p3e_A Diaminopimelate decarboxylase; southeast collaboratory for struct genomics, riken spring-8 center; 1.99A {Aquifex aeolicus}
Probab=100.00 E-value=1.1e-52 Score=465.19 Aligned_cols=406 Identities=23% Similarity=0.329 Sum_probs=324.0
Q ss_pred c-eeCCCccEEEecCCCCcCCcCCcCHHHHHHHhCCCCCCCCCCCCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCc
Q 005135 83 F-AVNPSGNVSVRPYGHATLAHQEIDLLKIVKKVSDPKSVGGLGLQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEAR 161 (712)
Q Consensus 83 f-~i~~~G~l~v~p~~~~~l~~~~i~l~el~~~~~~~~~~~~~g~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~ 161 (712)
| .++ +|++++ +++++.+|+++ ++||+|++|++.|++|+++|++.++.
T Consensus 10 ~~~~~-~~~l~~----------~~~~~~~l~~~-----------~~tP~~vidl~~l~~N~~~l~~~~~~---------- 57 (420)
T 2p3e_A 10 YLEYR-DGELFI----------EGVSLKELAQT-----------FGTPLYVYSSNFIKERFEAYRKAFPD---------- 57 (420)
T ss_dssp TEEEE-TTEEEE----------TTEEHHHHHHH-----------HCSSEEEEEHHHHHHHHHHHHHHSTT----------
T ss_pred hhhcc-CceeEE----------CCccHHHHHHh-----------hCCCEEEEEHHHHHHHHHHHHHhCCc----------
Confidence 5 665 588876 35689999999 89999999999999999999998852
Q ss_pred ceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEE
Q 005135 162 YQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVI 241 (712)
Q Consensus 162 ~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~I 241 (712)
.+++|++|+|+++.|++.+.+.| +|++|+|.+|+..++++|+ ++.+|++.++.|+.++++.|++ .|+. ++
T Consensus 58 ~~l~~vvKan~~~~v~~~l~~~G----~~~~vas~~E~~~~~~~G~--~~~~Il~~g~~~~~~~l~~a~~---~~i~-~~ 127 (420)
T 2p3e_A 58 ALICYAVKANFNPHLVKLLGELG----AGADIVSGGELYLAKKAGI--PPERIVYAGVGKTEKELTDAVD---SEIL-MF 127 (420)
T ss_dssp SEEEEEGGGCCCHHHHHHHHHTT----CEEEESSHHHHHHHHHTTC--CGGGEEECSSCCCHHHHHHHHH---TTCS-EE
T ss_pred CeEEEEEecCCCHHHHHHHHHcC----CeEEEeCHHHHHHHHHcCC--ChhHEEEeCCCCCHHHHHHHHH---cCCC-EE
Confidence 58999999999999999999999 5999999999999999995 6667999998899999999987 3432 59
Q ss_pred EECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCC-CCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecC
Q 005135 242 VLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHS-GHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIG 320 (712)
Q Consensus 242 vVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~-~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiG 320 (712)
+|||++|+++|.+.+++.+++.+|+|||||+.... +.+.+||...+|||++++++.++++++++.+.++ +.|||+|+|
T Consensus 128 ~vds~~~l~~l~~~a~~~~~~~~v~lRvn~~~~~~~~~~idtG~~~~R~G~~~~e~~~~~~~~~~~~~l~-l~Gl~~H~g 206 (420)
T 2p3e_A 128 NVESRQELDVLNEIAGKLGKKARIAIRVNPDVDPKTHPYIATGMQKSKFGVDIREAQKEYEYASKLENLE-IVGIHCHIG 206 (420)
T ss_dssp EECCHHHHHHHHHHHHHHTCCEEEEEEEEC----------------CCSCEEGGGHHHHHHHHHTCTTEE-EEEEECCCC
T ss_pred EeCCHHHHHHHHHHHHhcCCCCcEEEEECCCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHhCCCCC-EEEEEEECC
Confidence 99999999999999988888899999999986543 4466888788999999999999999999988888 999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCC
Q 005135 321 SQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVK 400 (712)
Q Consensus 321 Sqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~ 400 (712)
|+..+.+.+.+.++.+.+++.++++.|.++++||+|||++++|...+. .++++++++.|...+..+ |
T Consensus 207 s~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~l~~Ggg~~~~~~~~~~-------~~~~~~~~~~vr~g~~~y----g-- 273 (420)
T 2p3e_A 207 SQILDISPYREAVEKVVSLYESLTQKGFDIKYLDIGGGLGIKYKPEDK-------EPAPQDLADLLKDLLENV----K-- 273 (420)
T ss_dssp SSBSSCTHHHHHHHHHHHHHHHHHHTTCCCCEEECCCCBCCCCSTTCC-------CCCHHHHHHHHTTTC--C----C--
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCcCcCCCCCCC-------CCCHHHHHHHHHHHHHhc----C--
Confidence 998878888899999999999998889999999999999999964322 468999988887666532 3
Q ss_pred CCeEEecCcchhccccceEEEEEEEEEecCCCCCCCCcchhhHhhhchhhhHHHHHHHHHHHHHhhhhccCCCCcccccc
Q 005135 401 HPVLCSESGRAIVSHHSILIFEAVSASVSRAAPVAMSPLGLQYLVEGLTEDARSDYTKMTTAALRAMEIGASDPVRTYHV 480 (712)
Q Consensus 401 ~p~Li~EPGRalvA~agvLVt~Vi~vk~~~~~~~~~~~~~~~~lvdg~~~~~~~~y~~~~~~~~~g~~~~~~~~~~~Y~~ 480 (712)
|+++.||||++++++++|+++|+++|+.++...+ ++|+ |+.+..+
T Consensus 274 -~~~~~e~Gr~~~~~a~~l~t~Vi~vk~~~g~~~a--------~v~~----------------------G~~dg~~---- 318 (420)
T 2p3e_A 274 -AKIILEPGRSIMGNAGILITQVQFLKDKGSKHFI--------IVDA----------------------GMNDLIR---- 318 (420)
T ss_dssp -SEEEECCSHHHHGGGEEEEEEEEEEEEETTEEEE--------EESC----------------------CTTTCCH----
T ss_pred -CEEEEeCCHHHHhhceEEEEEEEEEEecCCcEEE--------EEcC----------------------chhcccc----
Confidence 6889999999999999999999999986542111 2221 2222111
Q ss_pred ccccccccchhhhcCCcceeeecCCCCCCCCeeeEeecccccCCCccccccCCCcccCCccccCCCCCCCcccEEEeecc
Q 005135 481 NLSIFTSIPDYWAIGQLFPIVPIHHLDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLG 560 (712)
Q Consensus 481 N~Svf~SlpD~w~i~q~fPI~pl~rl~e~p~~~~~l~G~TCdS~D~I~~fi~~~~~LPl~~l~~G~~~~~~~d~L~~~~~ 560 (712)
..+ .++.+|++++++. ..+..++.|+|++|+|.|.+.. +..+| ++++| |++.|+++
T Consensus 319 ---------~~l-~~~~~~~v~v~~~-g~~~~~~~i~G~~Cms~D~~~~----d~~lp--~~~~G-------D~v~~~~~ 374 (420)
T 2p3e_A 319 ---------PSI-YNAYHHIIPVETK-ERKKVVADIVGPICETGDFLAL----DREIE--EVQRG-------EYLAVLSA 374 (420)
T ss_dssp ---------HHH-HCCCCCEEESBCC-C---CEEEEECSSSSTTCEEEE----EEECC--CCCTT-------CEEEECSC
T ss_pred ---------hhh-hCccceeEecCCC-CCCceeEEEEccCCCCccEEee----cccCC--CCCCC-------CEEEEeCC
Confidence 111 1223466677532 2344789999999999998865 34455 78999 99999999
Q ss_pred cchhccccCCCCCCCCCcEEEEEecCCCCeEEEEEcCCCCCHHHHHHhc
Q 005135 561 GAYEEALGGVHNLFGGPSVVRVLQSDGPHSFAVTRAMPGPSCGDVLRVM 609 (712)
Q Consensus 561 GAYq~~m~s~fNlf~~p~~V~V~~~d~~g~~~i~r~~~g~t~~dvl~~~ 609 (712)
|||+.+|+++||+|++|.+|.++ + ++++++| +++|++|+++..
T Consensus 375 gAY~~~~~s~fn~~~~p~~~~~~--~--~~~~~ir--~~~~~~d~~~~~ 417 (420)
T 2p3e_A 375 GAYGFAMSSHYNMRPRAAEVLVE--N--GSVKLIR--KRENYDYIVEPS 417 (420)
T ss_dssp TTTTGGGCBCGGGCCCCEEEEEE--T--TEEEEEE--CCCCHHHHHGGG
T ss_pred CcchhhhhhhhhcCCCCeEEEEe--C--CcEEEEE--ecCCHHHHHhhc
Confidence 99999999999999999999997 3 4789998 789999999875
No 19
>2nva_A Arginine decarboxylase, A207R protein; PLP, TIM barrel, eukaryotic ODC- like, lyase; HET: PL2; 1.80A {Paramecium bursaria chlorella virus 1} PDB: 2nv9_A*
Probab=100.00 E-value=1.4e-52 Score=457.41 Aligned_cols=367 Identities=19% Similarity=0.275 Sum_probs=306.1
Q ss_pred HHHHHHHhCCCCCCCCCCCCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCC
Q 005135 108 LLKIVKKVSDPKSVGGLGLQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQF 187 (712)
Q Consensus 108 l~el~~~~~~~~~~~~~g~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~ 187 (712)
+.+|+++. . .++||++++|++.|++|+++|+++|+ +.+++|++|||+++.|++.+.+.|
T Consensus 5 ~~~l~~~~-~-------~~~tP~~vidl~~l~~N~~~l~~~~~----------~~~~~~~vKan~~~~v~~~l~~~G--- 63 (372)
T 2nva_A 5 VNNILKAH-P-------HQTKSFYVSSPKIVEDLIDQWTILFP----------RVTPHYAVKCNNDEVLLKTMCDKN--- 63 (372)
T ss_dssp HHHHHHHC-T-------TCCSEEEEECHHHHHHHHHHHHHHCT----------TEEEEEEGGGCCCHHHHHHHHHTT---
T ss_pred HHHHHHhc-C-------CCCCCEEEEeHHHHHHHHHHHHHhCC----------CCeEEEEeeeCCCHHHHHHHHHcC---
Confidence 56777762 1 27999999999999999999999874 368999999999999999999999
Q ss_pred ccceEecCHHHHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEE
Q 005135 188 RFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGA 267 (712)
Q Consensus 188 ~~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgL 267 (712)
+|++|+|.+|+..++++|+ ++++|++.++.|++++++.|++ .|+. .++|||++||++|.+.++ ..+|.|
T Consensus 64 -~g~~vas~~E~~~~~~~G~--~~~~I~~~~~~k~~~~l~~a~~---~~v~-~~~vds~~~l~~l~~~~~----~~~v~l 132 (372)
T 2nva_A 64 -VNFDCASSSEIKKVIQIGV--SPSRIIFAHTMKTIDDLIFAKD---QGVD-IATFDSSFELDKIHTYHP----NCKMIL 132 (372)
T ss_dssp -CEEEECSHHHHHHHHHHTC--CGGGEEECCSCCCHHHHHHHHH---HTCC-EEEECSHHHHHHHHHHCT----TCEEEE
T ss_pred -CcEEEcCHHHHHHHHHcCC--CHHHEEECCCCCCHHHHHHHHH---CCCC-EEEeCCHHHHHHHHHhCC----CCeEEE
Confidence 5999999999999999995 7778999999999999999987 3554 489999999999988764 368999
Q ss_pred EEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcC
Q 005135 268 RAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLG 347 (712)
Q Consensus 268 RVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G 347 (712)
||+++.. +.. ....+|||++.+++.++++.+++. .++ +.|||+|+|||..+.+.+.++++++.+++.++++.|
T Consensus 133 rv~~~~~--~~~---~~~~~R~G~~~~~~~~~~~~~~~~-~l~-~~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~g 205 (372)
T 2nva_A 133 RIRCDDP--NAT---VQLGNKFGANEDEIRHLLEYAKQL-DIE-VIGISFHVGSGSRNPEAYYRAIKSSKEAFNEAISVG 205 (372)
T ss_dssp EBCCCCT--TCS---BCCTTTSSBCGGGHHHHHHHHHHT-TCC-EEEEECCCCBSBCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEecCCC--CCc---ccCCCCCCCCHHHHHHHHHHHHHc-CCe-EEEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 9998764 211 223499999999999999999888 577 999999999999889999999999999999998889
Q ss_pred CCCcEEEEcCCCCcCcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCcchhccccceEEEEEEEEE
Q 005135 348 ANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEAVSAS 427 (712)
Q Consensus 348 ~~l~~IDIGGGlgv~Y~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPGRalvA~agvLVt~Vi~vk 427 (712)
.+++++|+|||||++| +. ++++++|++.|...+..++.. ..+++++||||++++++++|+++|+++|
T Consensus 206 ~~~~~~~~GGg~~~~~-~~---------~~~~~~~~~~vr~~i~~y~~~---~~~~~~~epGr~~~~~a~~l~t~V~~vk 272 (372)
T 2nva_A 206 HKPYILDIGGGLHADI-DE---------GELSTYMSDYINDAIKDFFPE---DTVTIVAEPGRFFAEHYSVLATQVIGKR 272 (372)
T ss_dssp CCCCEEECCSCBCCCC-C------------CCCHHHHHHHHHHHHHCCC---TTCEEEECCSHHHHGGGEEEEEEEEEEE
T ss_pred CCCcEEEeCCCCCcCC-CC---------CCCHHHHHHHHHHHHHHhcCc---CCCEEEEccChhHhhceEEEEEEEEEEE
Confidence 9999999999999998 21 256789999999988877432 1379999999999999999999999999
Q ss_pred ecCCCCCCCCcchhhHhhhchhhhHHHHHHHHHHHHHhhhhccCCCCccccccccccccccchhhhcCCcc-eeeecCCC
Q 005135 428 VSRAAPVAMSPLGLQYLVEGLTEDARSDYTKMTTAALRAMEIGASDPVRTYHVNLSIFTSIPDYWAIGQLF-PIVPIHHL 506 (712)
Q Consensus 428 ~~~~~~~~~~~~~~~~lvdg~~~~~~~~y~~~~~~~~~g~~~~~~~~~~~Y~~N~Svf~SlpD~w~i~q~f-PI~pl~rl 506 (712)
+.++ .+.+++|.|++.+++..|...+.+ |+++.+..
T Consensus 273 ~~~g-------------------------------------------~~~~~vd~G~~d~~~~~l~~~~~~~~v~~~~~~ 309 (372)
T 2nva_A 273 VRDG-------------------------------------------LYEYFFNESTYGGFSNVIFEKSVPTPQLLRDVP 309 (372)
T ss_dssp EETT-------------------------------------------EEEEEESCCTTTTCTHHHHSCCCCCCEESSCCC
T ss_pred EeCC-------------------------------------------cEEEEECCCccccchHhhhcccCccceeccCcc
Confidence 8643 134567777777777777654444 67654321
Q ss_pred CCCCCeeeEeecccccCCCccccccCCCcccCCccccCCCCCCCcccEEEeecccchhccccCCCCCCCCCcEEEE
Q 005135 507 DERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRV 582 (712)
Q Consensus 507 ~e~p~~~~~l~G~TCdS~D~I~~fi~~~~~LPl~~l~~G~~~~~~~d~L~~~~~GAYq~~m~s~fNlf~~p~~V~V 582 (712)
.+.+..++.|+|++|+|+|++.. +..|| ++++| |+|.|+++|||+.+|+++||+|++|++|++
T Consensus 310 ~~g~~~~~~i~G~~C~~~D~~~~----d~~lp--~~~~G-------D~v~~~~~GAY~~~~~~~fn~~~~p~~~~~ 372 (372)
T 2nva_A 310 DDEEYVPSVLYGCTCDGVDVINH----NVALP--ELHIG-------DWVYFPSWGAYTNVLTTSFNGFGEYDVYYI 372 (372)
T ss_dssp TTCCEEEEEEECSSSCTTCEEEE----EEEEE--CCCTT-------CEEEESSCCSSSGGGCCCGGGCCCEEEEEC
T ss_pred CCCCcceEEEEeCCcCCCCEEcc----cccCC--CCCCC-------CEEEEcCCCCCchhhhccccCCCCCcEEeC
Confidence 22345789999999999999875 44555 89999 999999999999999999999999999864
No 20
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio vulnificus} PDB: 2plk_A*
Probab=100.00 E-value=1.4e-52 Score=465.19 Aligned_cols=363 Identities=20% Similarity=0.272 Sum_probs=309.1
Q ss_pred CHHHHHHHhCCCCCCCCCCCCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCC
Q 005135 107 DLLKIVKKVSDPKSVGGLGLQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQ 186 (712)
Q Consensus 107 ~l~el~~~~~~~~~~~~~g~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~ 186 (712)
++.+|+++ ++||++++|++.|++|+++|+++|+ +.+++|++|||+++.|++.+.+.|
T Consensus 45 ~~~~l~~~-----------~~tP~~vidl~~l~~N~~~l~~~~~----------~~~i~~avKAn~~~~v~~~l~~~G-- 101 (419)
T 2plj_A 45 LIEASVEQ-----------FGAPLLLLDCDVIRQQYRALKNALP----------NVTLHYALKPLPHPVVVRTLLAEG-- 101 (419)
T ss_dssp HHHHHHHH-----------HCSSEEEEEHHHHHHHHHHHHHHST----------TEEEEEESTTCCCHHHHHHHHHHT--
T ss_pred HHHHHHHh-----------cCCCEEEEeHHHHHHHHHHHHHhCC----------CCeEEEEeccCCCHHHHHHHHHcC--
Confidence 68888888 9999999999999999999999875 368999999999999999999999
Q ss_pred CccceEecCHHHHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEE
Q 005135 187 FRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIG 266 (712)
Q Consensus 187 ~~~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~Ig 266 (712)
.|++|+|.+|+..++++|+ ++++|++.++.|++++|+.|++ .|+. .++|||++||++|.+.+++ .+|.
T Consensus 102 --~g~~vas~~E~~~~r~~G~--~~~~Il~~g~~k~~~~l~~a~~---~~v~-~~~vds~~el~~l~~~a~~----~~v~ 169 (419)
T 2plj_A 102 --ASFDLATTGEVELVASEGV--PADLTIHTHPIKRDADIRDALA---YGCN-VFVVDNLNELEKFKAYRDD----VELL 169 (419)
T ss_dssp --CEEEECSHHHHHHHHHTTC--CGGGEEECCSSCCHHHHHHHHH---HTCC-EEEECSHHHHHTTGGGTTT----CEEE
T ss_pred --CcEEEeCHHHHHHHHHcCC--ChhhEEEeCCCCCHHHHHHHHH---CCCC-EEEeCCHHHHHHHHHhcCC----CCEE
Confidence 5999999999999999995 7778999999999999999987 3554 4999999999999876542 6899
Q ss_pred EEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHc
Q 005135 267 ARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRL 346 (712)
Q Consensus 267 LRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~ 346 (712)
|||+++..+ .+....+|||++.+++.++++++++. .++ +.|||||+|||+.+.+.+.++++++.+++.++++.
T Consensus 170 lrvd~g~~~-----~~~~~~~RfG~~~~e~~~~~~~~~~~-~l~-l~Gl~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~ 242 (419)
T 2plj_A 170 VRLSFRNSE-----AFADLSKKFGCSPEQALVIIETAKEW-NIR-IKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVER 242 (419)
T ss_dssp EEBCC--------------CCCSCBCHHHHHHHHHHHHHT-TCE-EEEEECCCCTTCCCTHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEcCCCCC-----CCCCCCCCCcCCHHHHHHHHHHHHhC-CCc-EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 999976431 12234699999999999999999988 577 99999999999988999999999999999999989
Q ss_pred CC-CCcEEEEcCCCCcCcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCcchhccccceEEEEEEE
Q 005135 347 GA-NMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESGRAIVSHHSILIFEAVS 425 (712)
Q Consensus 347 G~-~l~~IDIGGGlgv~Y~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPGRalvA~agvLVt~Vi~ 425 (712)
|+ ++++||+|||||++|... ++++++|++.|...+.. + +. .|++++||||++++++++|+++|++
T Consensus 243 G~~~~~~l~~GGG~~~~y~~~---------~~~~~~~~~~vr~~i~~-y---~~-~~~~~~EpGr~~~~~a~~l~t~V~~ 308 (419)
T 2plj_A 243 GLPALSTLDIGGGFPVNYTQQ---------VMPIDQFCAPINEALSL-L---PE-TVHVLAEPGRFICAPAVTSVASVMG 308 (419)
T ss_dssp TCCCCCEEECCCCCCCCSSSC---------CCCHHHHHHHHHHHHTT-S---CT-TCEEEECCCHHHHGGGEEEEEEEEE
T ss_pred CCCCCCEEEECCCcCcCCCCC---------CCCHHHHHHHHHHHHHh-C---CC-CCEEEEcCCHHHhhhcEEEEEEEEE
Confidence 99 999999999999999642 36899999999888775 2 21 4799999999999999999999999
Q ss_pred EEecCCCCCCCCcchhhHhhhchhhhHHHHHHHHHHHHHhhhhccCCCCccccccccccccccchhhhcCCcceeeecCC
Q 005135 426 ASVSRAAPVAMSPLGLQYLVEGLTEDARSDYTKMTTAALRAMEIGASDPVRTYHVNLSIFTSIPDYWAIGQLFPIVPIHH 505 (712)
Q Consensus 426 vk~~~~~~~~~~~~~~~~lvdg~~~~~~~~y~~~~~~~~~g~~~~~~~~~~~Y~~N~Svf~SlpD~w~i~q~fPI~pl~r 505 (712)
+|+.++ .+.+++|.|++.+++..|...+.+|+++.++
T Consensus 309 vk~~~g-------------------------------------------~~~~~vd~G~~d~~~~~l~~~~~~~v~~~~~ 345 (419)
T 2plj_A 309 QAEREG-------------------------------------------QIWYYLDDGIYGSFSGLMFDDARYPLTTIKQ 345 (419)
T ss_dssp EEEETT-------------------------------------------EEEEEESCCTTTGGGHHHHSCCCCCEEESCC
T ss_pred EEeECC-------------------------------------------eEEEEEcCccccchHHHHhccccceEEecCC
Confidence 998533 1346788888888888887666778877532
Q ss_pred CCCCCCeeeEeecccccCCCccccccCCCcccCCccccCCCCCCCcccEEEeecccchhccccCCCCCCCCCcEEEEE
Q 005135 506 LDERPGVRGVLSDLTCDSDGKIDKFIGGGTSLPLHEMVGGGCGERGPYYLGMFLGGAYEEALGGVHNLFGGPSVVRVL 583 (712)
Q Consensus 506 l~e~p~~~~~l~G~TCdS~D~I~~fi~~~~~LPl~~l~~G~~~~~~~d~L~~~~~GAYq~~m~s~fNlf~~p~~V~V~ 583 (712)
..+..++.|+|++|+|+|++.. +..|| ++++| |+|+|+++|||+.+|+++||+|++|++|++.
T Consensus 346 --~~~~~~~~i~G~~C~s~D~~~~----d~~lp--~~~~G-------D~v~~~~~GAY~~~~~s~fn~~~~p~~v~~~ 408 (419)
T 2plj_A 346 --GGELIPSVLSGPTCDSVDVIAE----NILLP--KLNNG-------DLVIGRTMGAYTSATATDFNFFKRAQTIALN 408 (419)
T ss_dssp --SSCEEEEEEECSSSCTTCEEEE----EEEEE--CCCTT-------CEEEESSCSSSSGGGCBCGGGCCCCEEEEEC
T ss_pred --CCCceeEEEEcCCcCCCCeeee----cccCC--CCCCC-------CEEEEeCCCCchhhhhhhhcCCCCCeEEEEe
Confidence 2346889999999999999865 34455 89999 9999999999999999999999999999986
No 21
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, INT aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis}
Probab=99.94 E-value=9.9e-26 Score=246.77 Aligned_cols=247 Identities=12% Similarity=0.067 Sum_probs=191.4
Q ss_pred CCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeecc----CCcHHHHHHHHHcCCCCccceEecCHHHHHH
Q 005135 126 LQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKC----NQDRFVVEDIVKFGSQFRFGLEAGSKPELLL 201 (712)
Q Consensus 126 ~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKa----N~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~ 201 (712)
...|.+++|++.|++|++++++.++ +.+++|++|+ |.++.|++.+.++|+ -||+|+|..|+..
T Consensus 9 ~~~~~~~idl~~i~~N~~~l~~~~~----------~~~l~~vvKanaYG~~~~~i~~~l~~~G~---~~~~vas~~Ea~~ 75 (384)
T 1xfc_A 9 GLLAEAMVDLGAIEHNVRVLREHAG----------HAQLMAVVKADGYGHGATRVAQTALGAGA---AELGVATVDEALA 75 (384)
T ss_dssp --CEEEEEEHHHHHHHHHHHHHHHT----------TSEEEEECHHHHHTTCHHHHHHHHHHTTC---CEEEESCHHHHHH
T ss_pred CCCeEEEEeHHHHHHHHHHHHHhCC----------CCEEEEEEeeCCcCCChHHHHHHHHHCCC---CEEEEeEHHHHHH
Confidence 6679999999999999999998874 3689999999 999999999999995 4899999999999
Q ss_pred HHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccc
Q 005135 202 AMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGS 281 (712)
Q Consensus 202 Al~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~ 281 (712)
++++|+ ++ .|++.++ |+.++++.+++ .+ +.++|||+++++.|.+.+++.+++.+|.|||+
T Consensus 76 ~~~~G~--~~-~Il~~g~-~~~~~~~~~~~---~~--i~~~vds~~~l~~l~~~a~~~~~~~~V~l~vd----------- 135 (384)
T 1xfc_A 76 LRADGI--TA-PVLAWLH-PPGIDFGPALL---AD--VQVAVSSLRQLDELLHAVRRTGRTATVTVKVD----------- 135 (384)
T ss_dssp HHHTTC--CS-CEEECCC-CTTCCCHHHHH---TT--CEEEECSHHHHHHHHHHHHHHCCCEEEEEEBC-----------
T ss_pred HHhcCC--CC-CEEEEcC-CCHHHHHHHHH---cC--cEEEECCHHHHHHHHHHHHhcCCceEEEEEEE-----------
Confidence 999995 43 5777777 77788999886 33 57999999999999999988888888888886
Q ss_pred cCCCCCCCCCCH---HHHHHHHHHHHHcCCCCceeEEEEecCCCCC-ChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcC
Q 005135 282 TSGEKGKFGLTT---TQILRVVKKLEVAEMLDCFQLLHFHIGSQIP-STALLTDGVGEAAQIYCELVRLGANMQVIDIGG 357 (712)
Q Consensus 282 tgg~~SKFGl~~---~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~-d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGG 357 (712)
+| .+|||+++ +++.++++++++.+.|+ +.|||+|+||+.. +....++.++...++...+++.|++++++++||
T Consensus 136 tG--~~R~G~~~~~~~~~~~~~~~i~~~~~l~-l~Gl~tH~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~l~~g~ 212 (384)
T 1xfc_A 136 TG--LNRNGVGPAQFPAMLTALRQAMAEDAVR-LRGLMSHMVYADKPDDSINDVQAQRFTAFLAQAREQGVRFEVAHLSN 212 (384)
T ss_dssp SS--CCSSSBCTTTHHHHHHHHHHHHHTTSEE-EEEEECCC-----CCSHHHHHHHHHHHHHHHHHHHTTCCCSEEECBC
T ss_pred CC--CCccCCCcCcHHHHHHHHHHHHhCCCCc-EEEEEecCCCcCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCeEEEec
Confidence 33 38999998 89999999999988888 9999999999863 334456778888888888888899999999999
Q ss_pred CCCcCcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCcchhccccceEEEEEEEEEecC
Q 005135 358 GLGIDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNV-KHPVLCSESGRAIVSHHSILIFEAVSASVSR 430 (712)
Q Consensus 358 Glgv~Y~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv-~~p~Li~EPGRalvA~agvLVt~Vi~vk~~~ 430 (712)
+.++.|..+... + -..+...- ++. +.+.+ +| ..+.+++.|+++|+.+|+.+
T Consensus 213 s~~~~~~~~~~~--~-~vR~G~~l---------------yg~~~~~~~-~e---~~~~~a~~l~~~Vi~vk~~~ 264 (384)
T 1xfc_A 213 SSATMARPDLTF--D-LVRPGIAV---------------YGLSPVPAL-GD---MGLVPAMTVKCAVALVKSIR 264 (384)
T ss_dssp HHHHHHCGGGCC--S-EECCSGGG---------------GTCCSSGGG-CC---TTCCCCEEEEEECCEEEEEC
T ss_pred CHHHhcCccccC--C-EEccCHHh---------------HCCCccccc-cc---CCCceEEEEEEEEEEEEEcC
Confidence 999987432100 0 00011111 111 11122 34 46899999999999999853
No 22
>2dy3_A Alanine racemase; alpha/beta barrel, isomerase; HET: PLP; 2.10A {Corynebacterium glutamicum}
Probab=99.93 E-value=1e-24 Score=236.66 Aligned_cols=242 Identities=11% Similarity=0.008 Sum_probs=184.5
Q ss_pred CCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeecc----CCcHHHHHHHHHcCCCCccceEecCHHHHHHH
Q 005135 127 QLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKC----NQDRFVVEDIVKFGSQFRFGLEAGSKPELLLA 202 (712)
Q Consensus 127 ~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKa----N~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~A 202 (712)
.+|++++|++.|++|++++++.++. .+++|++|+ |.++.|++.+.++|+ .||+|+|.+|+..+
T Consensus 2 ~~~~~~idl~~l~~N~~~~~~~~~~----------~~l~~vvKanaYG~~~~~i~~~l~~~G~---~~~~vas~~E~~~~ 68 (361)
T 2dy3_A 2 NLLTTKIDLDAIAHNTRVLKQMAGP----------AKLMAVVKANAYNHGVEKVAPVIAAHGA---DAFGVATLAEAMQL 68 (361)
T ss_dssp CSEEEEECHHHHHHHHHHHHHHHTT----------SEEEEECHHHHHHTCHHHHHHHHHHTTC---CEEEESSHHHHHHH
T ss_pred CceEEEEeHHHHHHHHHHHHHhCCC----------cEEEEEEEecCcCCCHHHHHHHHHHCCC---CEEEEeEHHHHHHH
Confidence 4689999999999999999998852 689999999 799999999999995 48999999999999
Q ss_pred HHhcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCcccc
Q 005135 203 MSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGST 282 (712)
Q Consensus 203 l~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~t 282 (712)
+++|+ ++ .|++.++ |+.++++.|++ .+ +.++|||++|+++|.+.+++ +.+|.|||+ +
T Consensus 69 ~~~G~--~~-~il~~~~-~~~~~~~~~~~---~~--i~~~vds~~~l~~l~~~a~~---~~~v~l~vd-----------t 125 (361)
T 2dy3_A 69 RDIGI--SQ-EVLCWIW-TPEQDFRAAID---RN--IDLAVISPAHAKALIETDAE---HIRVSIKID-----------S 125 (361)
T ss_dssp HHTTC--CS-EEEECCC-CTTSCHHHHHT---TT--CEEEECSHHHHHHHHTSCCS---CEEEEEEBC-----------C
T ss_pred HhcCC--CC-CEEEECC-CCHHHHHHHHH---cC--CEEEECCHHHHHHHHHhCcc---CCEEEEEEe-----------C
Confidence 99995 43 4666677 77778998885 34 57999999999999876654 456666664 2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCCCh-HHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCc
Q 005135 283 SGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPST-ALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGI 361 (712)
Q Consensus 283 gg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~-~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv 361 (712)
| .+|||++++++.++++++++.+.|+ +.|||+|+||+.... ..+.+.++.+.++...+++.|++++++++||+.++
T Consensus 126 G--~~R~G~~~~~~~~~~~~~~~~~~l~-~~Gl~tH~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~g~s~~~ 202 (361)
T 2dy3_A 126 G--LHRSGVDEQEWEGVFSALAAAPHIE-VTGMFTHLACADEPENPETDRQIIAFRRALALARKHGLECPVNHVCNSPAF 202 (361)
T ss_dssp S--SCSSSBCHHHHHHHHHHHHTCTTEE-EEEEECCCC--------CHHHHHHHHHHHHHHHHHTTCCCCSCBCCCHHHH
T ss_pred C--CCCCCCCHHHHHHHHHHHHhCCCCC-EEEEEecCCCcCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCeEEEeCCHHH
Confidence 3 3899999999999999999888888 999999999986422 22667788888888888888999999999999998
Q ss_pred CcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCcchhccccceEEEEEEEEEecC
Q 005135 362 DYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNV-KHPVLCSESGRAIVSHHSILIFEAVSASVSR 430 (712)
Q Consensus 362 ~Y~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv-~~p~Li~EPGRalvA~agvLVt~Vi~vk~~~ 430 (712)
.|..+... + -..+...-| +. |... +||| +.+++.|+++|+.+|+.+
T Consensus 203 ~~~~~~~~--~-~vR~G~~l~---------------g~~~~~~--~e~~---~~~a~~l~~~Vi~vk~~~ 249 (361)
T 2dy3_A 203 LTRSDLHM--E-MVRPGLAFY---------------GLEPVAG--LEHG---LKPAMTWEAKVSVVKQIE 249 (361)
T ss_dssp HHCGGGCT--T-EECCCGGGG---------------TCCSSTT--CCCS---CCCCEEEEEECCEEEECC
T ss_pred hcCcccCC--C-EEecchHhh---------------CCCcccc--cCCC---ceeEEEEEEEEEEEEEcC
Confidence 87432100 0 001111111 11 1122 3777 899999999999999854
No 23
>1vfs_A Alanine racemase; TIM-barrel, greek-KEY motief, isomerase; HET: KCX DCS; 1.90A {Streptomyces lavendulae} SCOP: b.49.2.2 c.1.6.1 PDB: 1vfh_A* 1vft_A*
Probab=99.92 E-value=1.6e-24 Score=237.43 Aligned_cols=250 Identities=12% Similarity=0.007 Sum_probs=192.3
Q ss_pred CCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeecc----CCcHHHHHHHHHcCCCCccceEecCHHHHHH
Q 005135 126 LQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKC----NQDRFVVEDIVKFGSQFRFGLEAGSKPELLL 201 (712)
Q Consensus 126 ~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKa----N~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~ 201 (712)
+.+|++++|++.|++|++++++.++ +.+++|++|+ |.++.|++.+.+.|+ -+|+|+|..|+..
T Consensus 5 ~~~p~~~idl~~i~~N~~~l~~~~~----------~~~l~~vvKanaYGhg~~~i~~~l~~~G~---~~f~vas~~Ea~~ 71 (386)
T 1vfs_A 5 PTRVYAEIDLDAVRANVRALRARAP----------RSALMAVVKSNAYGHGAVPCARAAQEAGA---AWLGTATPEEALE 71 (386)
T ss_dssp CSSEEEEEEHHHHHHHHHHHHTTST----------TSEEEEECHHHHHTTCHHHHHHHHHHHTC---CEEEESSHHHHHH
T ss_pred CCCeEEEEeHHHHHHHHHHHHHhCC----------CcEEEEEEEecccCCCHHHHHHHHHHCCC---CEEEEeeHHHHHH
Confidence 6799999999999999999988773 3689999999 789999999999996 4799999999999
Q ss_pred HHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccc
Q 005135 202 AMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGS 281 (712)
Q Consensus 202 Al~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~ 281 (712)
++++|+ ++ .|++.++. ..++++.++. .+ +.++|||+++++.|.+.+++.+++.+|.|+|+
T Consensus 72 ~~~~G~--~~-~il~~~~~-~~~~~~~~~~---~~--i~~~vds~~~l~~l~~~a~~~~~~~~V~l~vd----------- 131 (386)
T 1vfs_A 72 LRAAGI--QG-RIMCWLWT-PGGPWREAIE---TD--IDVSVSGMWALDEVRAAARAAGRTARIQLKAD----------- 131 (386)
T ss_dssp HHHTTC--CS-EEEECCCC-TTCCHHHHHH---TT--CEEEECSHHHHHHHHHHHHHHTSCEEEEEEBC-----------
T ss_pred HHhcCC--CC-CEEEECCC-CHHHHHHHHH---cC--CEEEECCHHHHHHHHHHHHhcCCceEEEEEEc-----------
Confidence 999995 43 45555553 4567888886 33 46899999999999999988888788888885
Q ss_pred cCCCCCCCCCCHHHHHHH---HHHHHHcCCCCceeEEEEecCCCCCCh-HHHHHHHHHHHHHHHHHHHcCCCCcEEEEcC
Q 005135 282 TSGEKGKFGLTTTQILRV---VKKLEVAEMLDCFQLLHFHIGSQIPST-ALLTDGVGEAAQIYCELVRLGANMQVIDIGG 357 (712)
Q Consensus 282 tgg~~SKFGl~~~e~~~~---l~~l~~~~~L~~l~GLHfHiGSqi~d~-~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGG 357 (712)
|| .+|||++++++.++ ++++++.+.|+ +.|||+|+||+.... ....+.++...++...+++.|.+++++++||
T Consensus 132 tG--~~R~G~~~~e~~~~~~~~~~i~~~~~l~-l~Gl~tH~~~~~~~~~~~~~~~~~~f~~~~~~l~~~g~~~~~~~~g~ 208 (386)
T 1vfs_A 132 TG--LGRNGCQPADWAELVGAAVAAQAEGTVQ-VTGVWSHFACADEPGHPSIRLQLDAFRDMLAYAEKEGVDPEVRHIAN 208 (386)
T ss_dssp SS--CCSSSBCHHHHHHHHHHHHHHHHTTSEE-EEEEECCCSSTTSTTCHHHHHHHHHHHHHHHHHHHTTCCCSEEEEEC
T ss_pred CC--CCCCCCCHhHHHHHHHHHHHHHhCCCce-EEEEEecCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCeEEecC
Confidence 33 38999999888555 88898888888 999999999986422 2346677777778888888899999999999
Q ss_pred CCCcCcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCcchhccccceEEEEEEEEEecC
Q 005135 358 GLGIDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNV-KHPVLCSESGRAIVSHHSILIFEAVSASVSR 430 (712)
Q Consensus 358 Glgv~Y~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv-~~p~Li~EPGRalvA~agvLVt~Vi~vk~~~ 430 (712)
+.++.|...... + -..+...- ++. |.+.+..| +|+.+.+++.|+++|+.+|+.+
T Consensus 209 s~g~~~~~~~~~--~-~vR~G~~l---------------yg~~p~~~~~~~-~~~~l~pa~~l~a~Vi~vk~~~ 263 (386)
T 1vfs_A 209 SPATLTLPETHF--D-LVRTGLAV---------------YGVSPSPELGTP-AQLGLRPAMTLRASLALVKTVP 263 (386)
T ss_dssp HHHHHHCGGGCS--S-EEEECGGG---------------GTCCSCGGGCCT-TTTTCCCCEEEEEECCEEEEEC
T ss_pred CHHHHcCccccC--C-EEEeChhh---------------hCCCcccccccc-cccCCceEEEEEEEEEEEEEcC
Confidence 999887432110 0 00000100 111 11222233 5889999999999999999853
No 24
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A*
Probab=99.92 E-value=1.4e-24 Score=238.43 Aligned_cols=250 Identities=12% Similarity=0.021 Sum_probs=195.5
Q ss_pred CCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeecc----CCcHHHHHHHHHcCCCCccceEecCHHHHHH
Q 005135 126 LQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKC----NQDRFVVEDIVKFGSQFRFGLEAGSKPELLL 201 (712)
Q Consensus 126 ~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKa----N~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~ 201 (712)
..+|.+++|++.|++|++++++.++. +.+++|++|+ +..+.|++.+.+.|+ -+|+|+|..|+..
T Consensus 9 ~~~~~~~idl~ai~~N~~~l~~~~~~---------~~~l~~vvKanaYGhg~~~v~~~l~~~G~---~~f~vas~~Ea~~ 76 (391)
T 2vd8_A 9 YRDTWVEVDLDAIYNNVTHIXEFIPS---------DVEIFAVVKGNAYGHDYVPVAXIALEAGA---TRLAVAFLDEALV 76 (391)
T ss_dssp CSSCEEEEEHHHHHHHHHHHHHHSCT---------TCEEEEECHHHHHTTCHHHHHHHHHHTTC---CEEEESSHHHHHH
T ss_pred CCCeEEEEcHHHHHHHHHHHHHhcCC---------CCEEEEEEEecccCCChHHHHHHHHHcCC---CeEEeecHHHHHH
Confidence 56899999999999999999988742 4689999999 578999999999995 4899999999999
Q ss_pred HHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccc
Q 005135 202 AMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGS 281 (712)
Q Consensus 202 Al~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~ 281 (712)
++++|+ +++ |++.+ .++.++++.+++ .++.++|||+++++.|.+ +++.+++.+|.|+|+
T Consensus 77 lr~~G~--~~~-il~~g-~~~~~~~~~~~~-----~~i~~~vds~~~l~~l~~-a~~~~~~~~V~lkvd----------- 135 (391)
T 2vd8_A 77 LRRAGI--TAP-ILVLG-PSPPRDINVAAE-----NDVALTVFQXEWVDEAIX-LWDGSSTMXYHINFD----------- 135 (391)
T ss_dssp HHHTTC--CSC-EEECS-CCCGGGHHHHHH-----TTEEEECCCHHHHHHHHH-HCCSSCCEEEEEEBC-----------
T ss_pred HHhcCC--CCc-eEEec-CCChHHHHHHHH-----CCeEEEEcCHHHHHHHHH-HHhcCCceEEEEEEe-----------
Confidence 999995 443 55544 588888999986 346789999999999999 877777778888875
Q ss_pred cCCCCCCCCCCH-HHHHHHHHHHHHcCCCCceeEEEEecCCCCC-ChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCC
Q 005135 282 TSGEKGKFGLTT-TQILRVVKKLEVAEMLDCFQLLHFHIGSQIP-STALLTDGVGEAAQIYCELVRLGANMQVIDIGGGL 359 (712)
Q Consensus 282 tgg~~SKFGl~~-~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~-d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGl 359 (712)
|| .+|||+++ +++.++++++++.+.|+ +.|||+|++|+.. +...+.+.++...++...+++.|+++.++++|++.
T Consensus 136 tG--m~R~G~~~~~e~~~~~~~i~~~~~l~-l~Gl~tH~~~~d~~~~~~~~~q~~~f~~~~~~l~~~g~~~~~~~~gnS~ 212 (391)
T 2vd8_A 136 SG--MGRIGIRERXELXGFLXSLEGAPFLE-LEGVYTHFATADEVETSYFDXQYNTFLEQLSWLXEFGVDPXFVHTANSA 212 (391)
T ss_dssp SS--CCSSSBCCHHHHHHHHHHHTTCTTEE-EEEEECCCSSTTSSSCHHHHHHHHHHHHHHHHHHHTTCCCCSEECCCHH
T ss_pred CC--CCCCCCCchhhHHHHHHHHhhcCCce-EEEeeeccccccCCCcHHHHHHHHHHHHHHHHHHhccCCcceEEecchh
Confidence 33 37999985 89999999999888888 9999999999864 32235667777777777888889889999999999
Q ss_pred CcCcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCcchhccccceEEEEEEEEEecC
Q 005135 360 GIDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNV-KHPVLCSESGRAIVSHHSILIFEAVSASVSR 430 (712)
Q Consensus 360 gv~Y~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv-~~p~Li~EPGRalvA~agvLVt~Vi~vk~~~ 430 (712)
++.|..+.. .++ +...+. -+|. |.+. +.||||+.+.+++.|+++|+.+|+.+
T Consensus 213 g~~~~~~~~--------~~~------vR~G~~----lyg~~p~~~-~~~~g~~~l~pa~~l~~~V~~vk~~~ 265 (391)
T 2vd8_A 213 ATLRFQGIT--------FNA------VRIGIA----MYGLSPSVE-IRPFLPFXLEPALSLHTXVAHIKQVI 265 (391)
T ss_dssp HHTTCTTCC--------TTE------EEESTT----TTTCCSCTT-TGGGCSSCCCCCEEEEEEEEEEEEEC
T ss_pred HhhcCcccC--------CCE------EehhHH----hcCCCCccc-cccccccccceeEEEEEEeeEEEEcC
Confidence 998753211 110 000000 0111 1112 25889999999999999999999754
No 25
>1bd0_A Alanine racemase; isomerase, pyridoxal phosphate, alanine phosphonate; HET: IN5; 1.60A {Geobacillus stearothermophilus} SCOP: b.49.2.2 c.1.6.1 PDB: 1sft_A* 2sfp_A* 1l6g_A* 1niu_A* 1l6f_A* 1xql_A* 1xqk_A* 1epv_A* 1ftx_A* 3uw6_A
Probab=99.91 E-value=1.4e-23 Score=230.26 Aligned_cols=245 Identities=12% Similarity=0.050 Sum_probs=188.5
Q ss_pred CCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcc-eeeeeecc----CCcHHHHHHHHHcCCCCccceEecCHHHHHH
Q 005135 127 QLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARY-QGVFPVKC----NQDRFVVEDIVKFGSQFRFGLEAGSKPELLL 201 (712)
Q Consensus 127 ~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~-~~~YavKa----N~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~ 201 (712)
.+|.+++|++.|++|++++++.++ +. +++|++|+ |..+.|++.+.+.|+ -+|+|+|..|+..
T Consensus 6 ~~~~~~idl~ai~~N~~~l~~~~~----------~~~~l~~vvKAnaYG~g~~~v~~~l~~~G~---~~f~vas~~Ea~~ 72 (388)
T 1bd0_A 6 RDTWAEVDLDAIYDNVENLRRLLP----------DDTHIMAVVKANAYGHGDVQVARTALEAGA---SRLAVAFLDEALA 72 (388)
T ss_dssp SSEEEEEEHHHHHHHHHHHHHHSC----------TTCEEEEECHHHHHTTCHHHHHHHHHHHTC---CEEEESSHHHHHH
T ss_pred CceEEEEcHHHHHHHHHHHHHhCC----------CCCEEEEEEEecccCCCHHHHHHHHHHCCC---CEEEEeeHHHHHH
Confidence 578999999999999999998873 47 89999999 899999999999995 4899999999999
Q ss_pred HHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccc
Q 005135 202 AMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGS 281 (712)
Q Consensus 202 Al~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~ 281 (712)
++++|+ ++ .|++.++ ++.++++.+++ .++.++|||+++++.|.+.+ +.+++.+|.|+|+
T Consensus 73 lr~aG~--~~-~Il~~g~-~~~~~~~~~~~-----~~i~~~vds~~~l~~l~~~a-~~~~~~~V~lkvd----------- 131 (388)
T 1bd0_A 73 LREKGI--EA-PILVLGA-SRPADAALAAQ-----QRIALTVFRSDWLEEASALY-SGPFPIHFHLKMD----------- 131 (388)
T ss_dssp HHHTTC--CS-CEEECSC-CCGGGHHHHHH-----TTEEEEECCHHHHHHHHHHC-CCSSCEEEEEEBC-----------
T ss_pred HHhCCc--CC-CEEEECC-CCHHHHHHHHH-----cCCEEEECCHHHHHHHHHHh-ccCCCeEEEEEEc-----------
Confidence 999995 43 4666555 88889999986 34679999999999999988 7777778888885
Q ss_pred cCCCCCCCCCCH-HHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHc-CCCCcEEEEcCCC
Q 005135 282 TSGEKGKFGLTT-TQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRL-GANMQVIDIGGGL 359 (712)
Q Consensus 282 tgg~~SKFGl~~-~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~-G~~l~~IDIGGGl 359 (712)
|| .+|||+++ +++.++++++++.+.|+ +.|||+|++|+......+ ..+..+.+.++++. |+++.++++||+.
T Consensus 132 tG--m~R~G~~~~~e~~~~~~~i~~~~~l~-l~Gl~tH~~~~~~~~~~~---~~~q~~~f~~l~~~~g~~~~~~~~g~S~ 205 (388)
T 1bd0_A 132 TG--MGRLGVKDEEETKRIVALIERHPHFV-LEGLYTHFATADEVNTDY---FSYQYTRFLHMLEWLPSRPPLVHCANSA 205 (388)
T ss_dssp SS--SCSSSBCSHHHHHHHHHHHHHSTTEE-EEEEECCCSSTTSSCCHH---HHHHHHHHHHHHTTCSSCCSEEECCCHH
T ss_pred CC--CCcCCCCCHHHHHHHHHHHHhCCCce-EEEEEEccCCCCCCCcHH---HHHHHHHHHHHHhhcCCCCCeEEecCCH
Confidence 33 37999986 89999999999988888 999999999986433222 23333445557766 8889999999999
Q ss_pred CcCcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCcchhccccceEEEEEEEEEecC
Q 005135 360 GIDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNV-KHPVLCSESGRAIVSHHSILIFEAVSASVSR 430 (712)
Q Consensus 360 gv~Y~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv-~~p~Li~EPGRalvA~agvLVt~Vi~vk~~~ 430 (712)
++.|..+.. .++ +...+. -+|. |.+.+.+|| |+.+.+++.|+++|+.+|+.+
T Consensus 206 ~~~~~~~~~--------~~~------vR~G~~----lyG~~p~~~~~~~~-~~~l~pa~~l~~~V~~vk~~~ 258 (388)
T 1bd0_A 206 ASLRFPDRT--------FNM------VRFGIA----MYGLAPSPGIKPLL-PYPLKEAFSLHSRLVHVKKLQ 258 (388)
T ss_dssp HHHHCTTSC--------TTE------EEECGG----GGTCCSCGGGGGGC-SSCCCCCEEEEEECSEEEEEC
T ss_pred HHhcCcccC--------CCE------EehhHH----HHCCCccccccccc-ccCcceEEEEEEEEEEEEEcC
Confidence 998753211 111 000000 0121 222333366 788999999999999999864
No 26
>3anu_A D-serine dehydratase; PLP-dependent fold-type III enzyme, PL binding, zinc binding, lyase; HET: PLP; 1.90A {Gallus gallus} PDB: 3anv_A* 3awn_A* 3awo_A*
Probab=99.89 E-value=1.6e-22 Score=220.23 Aligned_cols=253 Identities=9% Similarity=-0.004 Sum_probs=191.4
Q ss_pred CCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHh
Q 005135 126 LQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSC 205 (712)
Q Consensus 126 ~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~ 205 (712)
++||++++|++.|++|++++++.++.. +.+++|++|+|.++.|++.+.+.|+ .|++|+|..|++.++++
T Consensus 10 ~~tP~~~idl~~l~~N~~~l~~~~~~~--------~~~l~~~vKa~~~~~i~~~l~~~G~---~~~~vas~~Ea~~~~~~ 78 (376)
T 3anu_A 10 LPTPALTIDRTTARRNAERMRERCRAL--------GVRLRPHVKTHKTLEGGLLATGGTR---RGIAVSTLAEARFFADG 78 (376)
T ss_dssp SCSSEEEEEHHHHHHHHHHHHHHHHHH--------TCEECCBCTTTCCHHHHHHHTTTCC---EEEEESSHHHHHHHHHT
T ss_pred CCCceEEEeHHHHHHHHHHHHHHHHHc--------CCcEEEEEhhhcCHHHHHHHHHCCC---CeEEEccHHHHHHHHHC
Confidence 899999999999999999999998642 4689999999999999999999985 59999999999999999
Q ss_pred cCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCC
Q 005135 206 LCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGE 285 (712)
Q Consensus 206 G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~ 285 (712)
|+ + .+++.+|.+ +++++.++...+.+.++.++|||+++++.|.+.+++.+++.+|.|||+. +
T Consensus 79 G~--~--~ii~~~~~~-~~~l~~~~~l~~~~~~i~~~vds~~~l~~l~~~a~~~~~~~~V~l~vd~-----------g-- 140 (376)
T 3anu_A 79 GF--D--DILLAYPVP-TARLEECAGLARRLDAFHVLLDRPEALASLRQRPLGHGKRWLVWLKLDC-----------G-- 140 (376)
T ss_dssp TC--E--EEEEEEECC-GGGHHHHHHHHHHSSCEEEEECCHHHHHHHHTSCCCTTCCEEEEEEECC-----------C--
T ss_pred CC--C--eEEEECCCc-HHHHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHHHhCCCceEEEEEECC-----------C--
Confidence 85 3 667667777 7778887762211234679999999999999888777777888888863 2
Q ss_pred CCCCCCCHHH--HHHHHHHHHHcC---CCCceeEEEEecCC-CC-CChH---HH-HHHHHHHHHHHHHHHHcCCCCcEEE
Q 005135 286 KGKFGLTTTQ--ILRVVKKLEVAE---MLDCFQLLHFHIGS-QI-PSTA---LL-TDGVGEAAQIYCELVRLGANMQVID 354 (712)
Q Consensus 286 ~SKFGl~~~e--~~~~l~~l~~~~---~L~~l~GLHfHiGS-qi-~d~~---~~-~~ai~~~~~~~~~L~~~G~~l~~ID 354 (712)
.+|||+++++ +.++++.+++ + .|+ +.|||+|.|| +. .+.. .+ .+.++.+.++...+++.|.++.+++
T Consensus 141 ~~R~G~~~~~~~~~~l~~~i~~-~~~~~l~-l~Gl~~h~g~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~vs 218 (376)
T 3anu_A 141 NGRAGVRPTDPAALELAQAIAN-DAPEEVT-LVGVYAHCGNTYGCSGADTIQAIARTTTNAVLSFVAALRQAGVPCPQAS 218 (376)
T ss_dssp --CSSBCTTSHHHHHHHHHHHH-SCTTTEE-EEEEEECCGGGC-CCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred CCcCCCCCCchhHHHHHHHHhC-CCCCceE-EEEEEeeCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 2789999877 9999999988 7 888 9999999998 43 3432 23 3367777788888888899999999
Q ss_pred EcCCCC-cCcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCc-chhccccceEEEEEEEEEec
Q 005135 355 IGGGLG-IDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESG-RAIVSHHSILIFEAVSASVS 429 (712)
Q Consensus 355 IGGGlg-v~Y~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPG-RalvA~agvLVt~Vi~vk~~ 429 (712)
+||+.+ +.+......... ......-|... + ..++| |+++.+++.++++|+++|..
T Consensus 219 ~Ggs~~~~~~~~~~~~~~~--vr~G~~l~~~~----------------~--~~~~~~~~~~~~a~~l~a~Vi~vk~~ 275 (376)
T 3anu_A 219 IGSTPSCSHPIPEMSQLTE--LHPGNYIFYDL----------------Q--QTQLGSCQPQDVAIRVLTRVIGHYAH 275 (376)
T ss_dssp ECCHHHHHSCCGGGGGSSE--ECCCGGGTCCH----------------H--HHHHTSSCGGGCCEEEEEEEEEEETT
T ss_pred EccCHHHhhhhhhcCCceE--eccceEEEecc----------------c--cccccCCCcCceEEEEEEEEEeeeCC
Confidence 999998 776432000000 00111111100 0 01234 67899999999999999874
No 27
>3co8_A Alanine racemase; protein structure initiative II, PSI-II, PLP, TIM barrel, structural genomics, NEW YORK SGX center for structural genomics; HET: PLP; 1.70A {Oenococcus oeni}
Probab=99.86 E-value=1.2e-20 Score=206.35 Aligned_cols=247 Identities=10% Similarity=-0.010 Sum_probs=173.3
Q ss_pred CCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeecc----CCcHHHHHHHHHcCCCCccceEecCHHHHHH
Q 005135 126 LQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKC----NQDRFVVEDIVKFGSQFRFGLEAGSKPELLL 201 (712)
Q Consensus 126 ~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKa----N~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~ 201 (712)
..+|.+++|++.|++|++++++.++ +.+++|++|+ +.++.|++.+.+.|+ -+|+|+|..|+..
T Consensus 7 ~~~~~~~idl~~l~~N~~~l~~~~~----------~~~l~~vvKanaYGhg~~~i~~~l~~~G~---~~~~vas~~Ea~~ 73 (380)
T 3co8_A 7 HRSTRIEFSKSSLAYNVQYTKQVSG----------AKTLWLAVKSNAYGHGLLQVSKIARECGV---DGLAVSVLDEGIA 73 (380)
T ss_dssp TSSCEEEECHHHHHHHHHHHHHHHC----------CSEEEEECHHHHHTTCHHHHHHHHGGGTC---CEEEESSHHHHHH
T ss_pred cCCeEEEEcHHHHHHHHHHHHHhCC----------CcEEEEEEEecccCCCHHHHHHHHHHcCC---CEEEEeeHHHHHH
Confidence 6789999999999999999998873 3689999999 578999999999995 4899999999999
Q ss_pred HHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccc
Q 005135 202 AMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGS 281 (712)
Q Consensus 202 Al~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~ 281 (712)
++++|+ +++ |++.+ .++.++++.++. .+ +.++|||+++++.|.+.++ .+ +.+|.|+|+
T Consensus 74 l~~aG~--~~~-il~~g-~~~~~~~~~~~~---~~--i~~~vds~~~l~~l~~~a~-~~-~~~V~l~vd----------- 131 (380)
T 3co8_A 74 IRQAGI--DDF-ILILG-PIDVKYAPIASK---YH--FLTTVSSLDWLKSADKILG-KE-KLSVNLAVD----------- 131 (380)
T ss_dssp HHHTTC--CCC-EEECS-CCCGGGHHHHHH---TT--CEEEECCHHHHHHHHHHCT-TC-CEEEEEEBC-----------
T ss_pred HHhcCC--CCC-EEEEC-CCCHHHHHHHHH---CC--CEEEECCHHHHHHHHHhcc-cC-CceEEEEEc-----------
Confidence 999995 444 54444 488888999886 33 5789999999999999887 77 677777775
Q ss_pred cCCCCCCCCCC-HHHHHHHHHHHHH-cCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCC
Q 005135 282 TSGEKGKFGLT-TTQILRVVKKLEV-AEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGL 359 (712)
Q Consensus 282 tgg~~SKFGl~-~~e~~~~l~~l~~-~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGl 359 (712)
|| .+|||++ ++++.++++++++ .+.|+ +.|||+|+||+......+ ..+..+.+.++.+....+.++.+|++.
T Consensus 132 tG--~~R~G~~~~ee~~~~~~~i~~~~~~l~-l~Gl~tH~~~~~~~~~~~---~~~q~~~f~~~~~~~~~~~~~~~~nS~ 205 (380)
T 3co8_A 132 TG--MNRIGVRSKKDLKDEIEFLQEHSDHFS-YDGIFTHFASSDNPDDHY---FQRQKNRWYELIDGLIMPRYVHVMNSG 205 (380)
T ss_dssp SS--SCSSSBCSHHHHHHHHHHHHHCTTTEE-EEEEECCCC------------CHHHHHHHHHHHTTSCCCSEEECBCHH
T ss_pred CC--CCCCCCCCHHHHHHHHHHHHhhCCCce-EEEEEEcCCCCCCCCcHH---HHHHHHHHHHHHhccCCCCcEEEeCCH
Confidence 33 3899999 9999999999999 88888 999999999985322221 122222333333222245678888877
Q ss_pred CcCcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCcchhccccceEEEEEEEEEecC
Q 005135 360 GIDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNV-KHPVLCSESGRAIVSHHSILIFEAVSASVSR 430 (712)
Q Consensus 360 gv~Y~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv-~~p~Li~EPGRalvA~agvLVt~Vi~vk~~~ 430 (712)
++.+....... ..++ +..... -+|. |...+ .|+ |+.+.+++.|+++|+.+|+.+
T Consensus 206 g~~~~~~~~~~-----~~~~------vR~G~~----lyG~~p~~~~-~~~-~~~l~pa~~l~a~Vi~vk~~~ 260 (380)
T 3co8_A 206 AAMYHSKELPG-----CNSI------ARVGTV----VYGVEPSEGV-LGP-IDKLKPVFELKSALTFVKKIP 260 (380)
T ss_dssp HHHHCGGGCTT-----SCSE------EEESTT----TTTCCTTTTS-SSC-GGGSCCCEEEEEECSEEEEEC
T ss_pred HHhcCcccccC-----CCce------EcccHh----hhCcCCCccc-ccc-ccCcceeEEEEEEEEEEEEcC
Confidence 76653211000 0010 000000 0111 11122 366 888999999999999999854
No 28
>3gwq_A D-serine deaminase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; HET: MSE; 2.00A {Burkholderia xenovorans LB400}
Probab=99.85 E-value=1.6e-19 Score=200.40 Aligned_cols=204 Identities=14% Similarity=0.123 Sum_probs=177.2
Q ss_pred CCCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHH
Q 005135 125 GLQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMS 204 (712)
Q Consensus 125 g~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~ 204 (712)
.++||++++|++.|++|++++++.++.. +.++.+.+|+|..+.|++.+.+.|+ .|++|+|..|++.+++
T Consensus 43 ~~~tP~~viDl~al~~N~~~l~~~~~~~--------gv~l~~vvKah~~~~va~~l~~~G~---~g~~vas~~Ea~~l~~ 111 (426)
T 3gwq_A 43 DVSLPAAVLYADRVEHNLKWMQAFVAEY--------GVKLAPHGKTTMAPQLFRRQLETGA---WGITLATAHQVRAAYH 111 (426)
T ss_dssp CBCSSEEEEEHHHHHHHHHHHHHHHHHH--------CCEECCBCTTTCCHHHHHHHHHTTC---CCEEESSHHHHHHHHH
T ss_pred cCCCCeEEEeHHHHHHHHHHHHHHHhhc--------CCEEEEEEccCCCHHHHHHHHHCCC---CeEEEeCHHHHHHHHH
Confidence 3999999999999999999999988642 4689999999999999999999996 5999999999999999
Q ss_pred hcCCCCCCcEEEeCCCCCHHHHHHHHHhcc-CCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccC
Q 005135 205 CLCKGSPEALLVCNGFKDAGYITLALLARK-LDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTS 283 (712)
Q Consensus 205 ~G~~~~p~~II~~ng~K~~e~I~~Al~~~~-~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tg 283 (712)
+|+ ++|++.++...++.++.++...+ .+++++++|||+++++.|.+.+++.+++.+|.|+|+. +
T Consensus 112 ~Gi----~~ill~~~~~~~~~~~~~~~l~~~~~~~l~~~Vds~~~l~~L~~~a~~~~~~~~V~l~Vdt-----------G 176 (426)
T 3gwq_A 112 GGV----SRVLMANQLVGRRNMMMVAELLSDPEFEFFCLVDSVEGVEQLGEFFKSVNKQLQVLLELGV-----------P 176 (426)
T ss_dssp TTC----CEEEECSCCCSHHHHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCCEEEEEEECC-----------T
T ss_pred CCC----CeEEEECCcCCHHHHHHHHHHhhcCCccEEEEeCCHHHHHHHHHHHHHCCCeeEEEEEeCC-----------C
Confidence 984 47888999888888877654322 3466788999999999999999988888999999963 2
Q ss_pred CCCCCCCCC-HHHHHHHHHHHHHcC-CCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCC---CCcEEEEcCC
Q 005135 284 GEKGKFGLT-TTQILRVVKKLEVAE-MLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGA---NMQVIDIGGG 358 (712)
Q Consensus 284 g~~SKFGl~-~~e~~~~l~~l~~~~-~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~---~l~~IDIGGG 358 (712)
.+|||+. .+++.++++++++.+ .|+ +.|||+|.|+. .+.+.+++.++++.+++.+|++.|. ++.+|++||.
T Consensus 177 --~~R~Gv~~~~e~~~l~~~i~~~~~~l~-l~Gl~th~g~~-~~~~~~~~~~~~l~~l~~~L~~~g~~~~~~~~lS~G~S 252 (426)
T 3gwq_A 177 --GGRTGVRDAAQRNAVLEAITRYPDTLK-LAGVELYEGVL-KEEHEVREFLQSAVAVTRELVEQERFARAPAVLSGAGS 252 (426)
T ss_dssp --TSSSSBCSHHHHHHHHHHHHTSTTTEE-EEEEEECGGGC-CSHHHHHHHHHHHHHHHHHHHHHTCCSSSSEEEEECCS
T ss_pred --CCcCCCCCHHHHHHHHHHHHcCCCCEE-EEeEEEEcccc-CCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCEEEecCC
Confidence 3699997 489999999999988 888 99999999984 5788888999999999999988886 8999999974
No 29
>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} SCOP: b.49.2.2 c.1.6.1 PDB: 2odo_A*
Probab=99.81 E-value=1.2e-18 Score=188.65 Aligned_cols=238 Identities=11% Similarity=0.024 Sum_probs=169.7
Q ss_pred CcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeecc----CCcHHHHHHHHHcCCCCccceEecCHHHHHHHH
Q 005135 128 LPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKC----NQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAM 203 (712)
Q Consensus 128 tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKa----N~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al 203 (712)
.|.+++|++.|++|++++++. + +.+++|.+|+ +..+.|++.+.+.+ .||+|+|..|+..++
T Consensus 3 ~~~~~idl~~l~~N~~~l~~~-~----------~~~l~~vvKanaYG~g~~~i~~~l~~~~----~~~~va~~~Ea~~~~ 67 (357)
T 1rcq_A 3 PARALIDLQALRHNYRLAREA-T----------GARALAVIKADAYGHGAVRCAEALAAEA----DGFAVACIEEGLELR 67 (357)
T ss_dssp CCEEEEEHHHHHHHHHHHHHH-H----------CSEEEEECHHHHHTTCHHHHHHHHTTTC----SEEEESSHHHHHHHH
T ss_pred ceEEEEeHHHHHHHHHHHHhC-C----------CCeEEEEEEeccccCCHHHHHHHHHHhC----CEEEEccHHHHHHHH
Confidence 588999999999999999887 3 3689999999 78999999998774 599999999999999
Q ss_pred HhcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccC
Q 005135 204 SCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTS 283 (712)
Q Consensus 204 ~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tg 283 (712)
++|+ ++ .|++..|.++.++++.+++ .++.++|||+++++.|.+ + +.+++.+|.|+|+ ||
T Consensus 68 ~~G~--~~-~Il~~~g~~~~~~~~~~~~-----~~i~~~vds~~~l~~l~~-a-~~~~~~~V~l~vd-----------tG 126 (357)
T 1rcq_A 68 EAGI--RQ-PILLLEGFFEASELELIVA-----HDFWCVVHCAWQLEAIER-A-SLARPLNVWLKMD-----------SG 126 (357)
T ss_dssp HTTC--CS-CEEETTCCSSGGGHHHHHH-----TTEEEEECSHHHHHHHHH-C-CCSSCEEEEEEBC-----------SS
T ss_pred hCCc--CC-CEEEEeCCCCHHHHHHHHH-----cCCEEEECCHHHHHHHHh-h-ccCCCeEEEEEEc-----------CC
Confidence 9995 43 4664566688899999986 346799999999999998 7 7777788998886 33
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHH-cCCCCcEEEEcCCCCcC
Q 005135 284 GEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVR-LGANMQVIDIGGGLGID 362 (712)
Q Consensus 284 g~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~-~G~~l~~IDIGGGlgv~ 362 (712)
.+|||++++++.++++++++.+.|+ +.|||+|++++......+. .+..+.+.++.+ +..++...|-||++..+
T Consensus 127 --~~R~G~~~~~~~~~~~~i~~~~~l~-l~Gl~th~~~~~~~~~~~~---~~~~~~f~~~~~~l~~~~s~~ns~~~~~~~ 200 (357)
T 1rcq_A 127 --MHRVGFFPEDFRAAHERLRASGKVA-KIVMMSHFSRADELDCPRT---EEQLAAFSAASQGLEGEISLRNSPAVLGWP 200 (357)
T ss_dssp --SCSSSBCHHHHHHHHHHHHHTTCEE-EEEEECCCSSTTCTTCTHH---HHHHHHHHHHHTTCCSCEECCCHHHHHHCT
T ss_pred --CCCCCCCHHHHHHHHHHHHhCCCCc-EEEEEEcccCCCCCCcHHH---HHHHHHHHHHHhccCCCeEEEeCHHhhcCc
Confidence 3899999999999999999998888 9999999999864332221 122222333332 22223333334444332
Q ss_pred cCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCcchhccccceEEEEEEEEEecC
Q 005135 363 YDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNV-KHPVLCSESGRAIVSHHSILIFEAVSASVSR 430 (712)
Q Consensus 363 Y~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv-~~p~Li~EPGRalvA~agvLVt~Vi~vk~~~ 430 (712)
..+.. . ..+...- +|. |...+ .++ |..+.+++.|+++|+.+|+.+
T Consensus 201 ~~~~~----~--vR~G~~l---------------yg~~~~~~~-~~~-~~~~~~a~~l~~~Vi~vk~~~ 246 (357)
T 1rcq_A 201 KVPSD----W--VRPGILL---------------YGATPFERA-HPL-ADRLRPVMTLESKVISVRDLP 246 (357)
T ss_dssp TSCCS----E--ECCCGGG---------------GTCCSSSSC-CTT-GGGCCCCEEEEEEEEEEEEEC
T ss_pred ccCCC----E--EccCHHh---------------hCCCccccc-ccc-cCCCceEEEEEEEEEEEEEcC
Confidence 11000 0 0010000 111 11121 344 778999999999999999854
No 30
>2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradat isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A*
Probab=99.78 E-value=1.2e-17 Score=182.65 Aligned_cols=241 Identities=14% Similarity=0.027 Sum_probs=173.3
Q ss_pred CCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeecc----CCcHHHHHHHHHcCCCCccceEecCHHHHHHH
Q 005135 127 QLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKC----NQDRFVVEDIVKFGSQFRFGLEAGSKPELLLA 202 (712)
Q Consensus 127 ~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKa----N~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~A 202 (712)
.+|++++|++.|++|++++++.++ +.+++|.+|+ +..+.|++.+.+ . .||.|+|..|+..+
T Consensus 22 ~~p~~~idl~al~~N~~~l~~~~~----------~~~l~~vvKanaYGhg~~~v~~~l~~-~----~~~~va~~~Ea~~l 86 (379)
T 2rjg_A 22 QAATVVINRRALRHNLQRLRELAP----------ASKMVAVVKANAYGHGLLETARTLPD-A----DAFGVARLEEALRL 86 (379)
T ss_dssp CCSEEEEEHHHHHHHHHHHHHHST----------TSEEEEECHHHHHTTCHHHHHHHCTT-C----SEEEESSHHHHHHH
T ss_pred CCeEEEEeHHHHHHHHHHHHHhCC----------CCEEEEEEeecccCCCHHHHHHHHHh-C----CEEEEeEHHHHHHH
Confidence 789999999999999999988763 3689999999 799999999887 5 59999999999999
Q ss_pred HHhcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCcccc
Q 005135 203 MSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGST 282 (712)
Q Consensus 203 l~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~t 282 (712)
+++|+ ++ .|++.+|.++.++++.+++ .++.++|||+++++.|.+ + +.+++.+|.|+|+ |
T Consensus 87 r~~G~--~~-~Il~~~g~~~~~~~~~~~~-----~~i~~~vds~~~l~~l~~-a-~~~~~~~V~l~vd-----------t 145 (379)
T 2rjg_A 87 RAGGI--TK-PVLLLEGFFDARDLPTISA-----QHFHTAVHNEEQLAALEE-A-SLDEPVTVWMKLD-----------T 145 (379)
T ss_dssp HHTTC--CS-CEEETTCCSCGGGHHHHHH-----TTEEEEECSHHHHHHHHH-C-CCSSCBCEEEEBC-----------S
T ss_pred HhCCc--CC-CEEEEECCCCHHHHHHHHH-----cCcEEEECCHHHHHHHHh-h-CCCCCeEEEEEEC-----------C
Confidence 99985 43 5665677788889999886 346799999999999988 6 6777788999886 3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCC-CCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCc
Q 005135 283 SGEKGKFGLTTTQILRVVKKLEVAEM-LDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGI 361 (712)
Q Consensus 283 gg~~SKFGl~~~e~~~~l~~l~~~~~-L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv 361 (712)
| .+|||++++|+.++++++++.+. |+ +.|||+|.+++......+ ..+..+.+.++.+. .+.. +++|++-++
T Consensus 146 G--m~R~G~~~~e~~~~~~~i~~~~~~l~-l~Gl~tH~~~~d~~~~~~---~~~q~~~f~~~~~~-l~~~-~s~gnS~~~ 217 (379)
T 2rjg_A 146 G--MHRLGVRPEQAEAFYHRLTQCKNVRQ-PVNIVSHFARADEPKCGA---TEKQLAIFNTFCEG-KPGQ-RSIAASGGI 217 (379)
T ss_dssp S--CCSSSBCHHHHHHHHHHHTTCSSBCS-SCEEECCCSSTTCTTSTH---HHHHHHHHHHHHTT-CCSC-EECCCHHHH
T ss_pred C--CCccCCCHHHHHHHHHHHHhCCCcEE-EEEEEEECCccCCCCcHH---HHHHHHHHHHHHhc-cCCC-eEEEECcch
Confidence 3 37999999999999999998888 88 999999999986433222 11222233333321 2223 788876655
Q ss_pred CcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCC-CCCeEEecCcchhccccceEEEEEEEEEecC
Q 005135 362 DYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNV-KHPVLCSESGRAIVSHHSILIFEAVSASVSR 430 (712)
Q Consensus 362 ~Y~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv-~~p~Li~EPGRalvA~agvLVt~Vi~vk~~~ 430 (712)
.+......+ . ..+...- +|. |.+.+..++ +....+++.|+++|+.+|+.+
T Consensus 218 ~~~~~~~~~-~--vR~G~~l---------------yG~~p~~~~~~~~-~~~l~pa~~l~a~Vi~vk~~~ 268 (379)
T 2rjg_A 218 LLWPQSHFD-W--VRPGIIL---------------YGVSPLEDRSTGA-DFGCQPVMSLTSSLIAVREHK 268 (379)
T ss_dssp HHCGGGCSS-E--ECCCGGG---------------GTCCSSSSSCCGG-GGTCCCCEEEEEEEEEEEEEC
T ss_pred hcCcccCCC-E--ECccHHH---------------HCCCccccccccc-ccCCceEEEEEEEEEEEEEcC
Confidence 442111000 0 0001100 111 111110122 567899999999999999864
No 31
>3llx_A Predicted amino acid aldolase or racemase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: LLP TRS; 1.50A {Idiomarina loihiensis}
Probab=99.75 E-value=1.4e-17 Score=181.83 Aligned_cols=205 Identities=13% Similarity=0.120 Sum_probs=163.6
Q ss_pred CCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHh
Q 005135 126 LQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSC 205 (712)
Q Consensus 126 ~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~ 205 (712)
++||++++|++.|++|++++++.++. .+.++.+.+|+|..+.|++.+.+.|+ .|+.|++..|++..+++
T Consensus 12 ~~tP~~~idl~al~~N~~~l~~~~~~--------~~~~l~~vvKah~~~~va~~l~~~G~---~~~~va~~~Ea~~l~~~ 80 (376)
T 3llx_A 12 PDTPYLLIDEAKLKSNINYLKQRVES--------LGSHLRPHLKTLRTLEAAGYLLDSKS---APATVSTLAEAEAYAKA 80 (376)
T ss_dssp SCSSEEEEEHHHHHHHHHHHHHHHHH--------TTCCBCCBCTTTCBHHHHHHHCSSTT---SCEEESSHHHHHHHHHT
T ss_pred CCCcEEEEcHHHHHHHHHHHHHHHHh--------CCCeEEEEecccCCHHHHHHHHhcCC---CcEEEecHHHHHHHHhC
Confidence 89999999999999999999998874 14688999999999999999999986 58999999999999999
Q ss_pred cCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCC
Q 005135 206 LCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGE 285 (712)
Q Consensus 206 G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~ 285 (712)
|+ + .+|+.++.. .+.++.++...+.+.++.++|||+++++.|.+.+++.+++.+|.|+|+ +|.
T Consensus 81 Gi--~--~~il~~~~~-~~~~~~~~~l~~~~~~l~~~Vds~~~l~~l~~~a~~~~~~~~V~l~vd-----------tG~- 143 (376)
T 3llx_A 81 GY--T--DLLYAVGIA-PAKLKRVAALRQQGINLHILLDNITQAQAVVDYAAEFGQDFSVFIEID-----------SDD- 143 (376)
T ss_dssp TC--C--EEEEEEECC-GGGHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTCCCEEEEEBC-----------SSS-
T ss_pred CC--C--cEEEeCCCC-HHHHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhcCCceEEEEEEC-----------CCC-
Confidence 85 2 455666655 667877763211235678899999999999999988888888888885 332
Q ss_pred CCCCCCCHHH--HHHHHHHHHHcCCCCceeEEEEecCCCCC--ChH----HHHHHHHHHHHHHHHHHHcCCCCcEEEEcC
Q 005135 286 KGKFGLTTTQ--ILRVVKKLEVAEMLDCFQLLHFHIGSQIP--STA----LLTDGVGEAAQIYCELVRLGANMQVIDIGG 357 (712)
Q Consensus 286 ~SKFGl~~~e--~~~~l~~l~~~~~L~~l~GLHfHiGSqi~--d~~----~~~~ai~~~~~~~~~L~~~G~~l~~IDIGG 357 (712)
+|||+.+++ +.++++.+ .++ +.|||+|.|++.. +.+ ..++.++.+.++...+++.|.++.++++||
T Consensus 144 -~R~G~~~~~~~l~~~~~~l----~l~-l~Gl~th~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~l~~~g~~~~~vs~g~ 217 (376)
T 3llx_A 144 -HRGGIKPSDSKLLTIAKTL----GEH-FTGLMTHAGGSYACNTEQGLKNFAKQECDAVRIARNNLETAGIHCAITSVGS 217 (376)
T ss_dssp -SSSCBCTTCTHHHHHHHHH----GGG-EEEEECCCGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEECC
T ss_pred -CCCCCCCchHHHHHHHHHh----CCE-EeEEEEecccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEcC
Confidence 689999876 66666655 467 9999999998642 221 245666677777777888899999999999
Q ss_pred CCCcCcC
Q 005135 358 GLGIDYD 364 (712)
Q Consensus 358 Glgv~Y~ 364 (712)
+.++.+.
T Consensus 218 S~~~~~~ 224 (376)
T 3llx_A 218 TPTAHFG 224 (376)
T ss_dssp HHHHHHC
T ss_pred Chhhhhh
Confidence 9777654
No 32
>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703}
Probab=99.64 E-value=6e-15 Score=155.03 Aligned_cols=197 Identities=10% Similarity=0.079 Sum_probs=151.2
Q ss_pred EEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHh-----
Q 005135 131 IVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSC----- 205 (712)
Q Consensus 131 ~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~----- 205 (712)
+..|.+.|++|++++++..++. ..+.+++|.+|++....|.+. .+.|+ -+|.|++..|+...+++
T Consensus 25 l~idl~ai~~Ni~~~~~~~~~~------~~~~~l~avvK~hg~~~va~~-~~~G~---~~f~va~~~Ea~~lr~~l~~~~ 94 (282)
T 3cpg_A 25 ITDGVHRVLDRIAAAEEQAGRE------AGSVRLLAATKTRDIGEIMAA-IDAGV---RMIGENRPQEVTAKAEGLARRC 94 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC------TTSSEEEEECTTCCHHHHHHH-HHTTC---CCEEESCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCC------CCCcEEEEEECCCCHHHHHHH-HHCCC---CEEEEEeHHHHHHHHHhhhhhc
Confidence 3457788888888887654310 124789999999999999998 68886 48999999999998877
Q ss_pred ----------cCCCC----CCcEEEe--CCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEE
Q 005135 206 ----------LCKGS----PEALLVC--NGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARA 269 (712)
Q Consensus 206 ----------G~~~~----p~~II~~--ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRV 269 (712)
|+ + +..|++. ++.+. +.++.++. . .+++++|||+++++.|.+.+++.+++.+|.|||
T Consensus 95 ~~~g~~~~~~G~--~~d~~~~~i~~~~iG~~~~-~~~~~~~~--~--~~l~~~Vds~~~l~~L~~~a~~~~~~~~V~lkV 167 (282)
T 3cpg_A 95 AERGFSLGVAGA--APDAAAEHIPFHLIGQLQS-NKIGKVLP--V--VDTIESVDSIDLAEKISRRAVARGITVGVLLEV 167 (282)
T ss_dssp HHTTEEECCC--------CCEEECEEECSCCCG-GGHHHHTT--T--CSEEEEECCHHHHHHHHHHHHHHTCCEEEEEEB
T ss_pred cccccccccccc--cccccccceeeeecChhHH-HHHHHHHH--h--CCEEEEeCCHHHHHHHHHHHHhcCCCceEEEEE
Confidence 53 2 3344432 34444 34776653 1 346789999999999999988888888999999
Q ss_pred eeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHc-CC
Q 005135 270 KLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRL-GA 348 (712)
Q Consensus 270 n~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~-G~ 348 (712)
| +|++.+|||++++++.++++++++.+.|+ +.|||+|.+++. +.+...+.++++.++...+++. |.
T Consensus 168 d-----------tGme~~R~G~~~ee~~~l~~~i~~~~~l~-l~Gl~th~~~~~-~~~~~~~~~~~l~~~~~~l~~~~g~ 234 (282)
T 3cpg_A 168 N-----------ESGEESKSGCDPAHAIRIAQKIGTLDGIE-LQGLMTIGAHVH-DETVIRRGFSHLRKTRDLILASGEP 234 (282)
T ss_dssp C-----------CSSCTTSSSBCGGGHHHHHHHHHTCTTEE-EEEEECCCCCSS-CHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred E-----------CCCCCCCCCcCHHHHHHHHHHHHhCCCce-EEeEEEECCCCC-CHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 6 45667999999999999999999988888 999999999974 6666667788888888888765 63
Q ss_pred ---CCcEEEEcC
Q 005135 349 ---NMQVIDIGG 357 (712)
Q Consensus 349 ---~l~~IDIGG 357 (712)
++..+++|+
T Consensus 235 ~~~~~~~lS~g~ 246 (282)
T 3cpg_A 235 GTDRCRELSMGM 246 (282)
T ss_dssp TCTTCCEEECCC
T ss_pred CCCCCCEEEecC
Confidence 477787664
No 33
>4ecl_A Serine racemase, vantg; antibiotic resistance, vancomycin resistance, center for STR genomics of infectious diseases (csgid); HET: MSE; 2.02A {Enterococcus faecalis}
Probab=99.60 E-value=8.9e-15 Score=159.78 Aligned_cols=195 Identities=12% Similarity=0.054 Sum_probs=157.2
Q ss_pred cEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccC----CcHHHHHHHHHcCCCCccceEecCHHHHHHHHH
Q 005135 129 PLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCN----QDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMS 204 (712)
Q Consensus 129 Pl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN----~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~ 204 (712)
...++|++.|++|++++++.++ .+.++++.+|+| ....|++.+.+.|+ -+|.|++..|+...++
T Consensus 7 ~~l~Idl~al~~N~~~l~~~~~---------~~~~l~avvKanaYGhg~~~va~~l~~~G~---~~f~va~~~Ea~~lr~ 74 (374)
T 4ecl_A 7 AYLEINLNNLEHNVNTLQKAMS---------PKCELMAVVKAEAYGHGMYEVTTYLEQIGV---SSFAVATIDEGIRLRK 74 (374)
T ss_dssp EEEEECHHHHHHHHHHHHHTSC---------TTCEEEEECHHHHHTTCHHHHHHHHHHTTC---CEEEESSHHHHHHHHH
T ss_pred EEEEEcHHHHHHHHHHHHHhcC---------CCCEEEEEEccCccCCCHHHHHHHHHHCCC---CEEEEEEHHHHHHHHh
Confidence 3577999999999999998774 247899999997 88999999999996 4899999999999999
Q ss_pred hcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCC
Q 005135 205 CLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSG 284 (712)
Q Consensus 205 ~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg 284 (712)
+|+ ++ .|++-++ ...++++.+++ .++.++|||+++++.|.+. +++.+|.|+|+ ||
T Consensus 75 ~G~--~~-~ilvlg~-~~~~~~~~~~~-----~~i~~~v~s~~~l~~l~~~----~~~~~v~lkvd-----------tG- 129 (374)
T 4ecl_A 75 YGI--SS-EILILGY-TSPSRAKELCK-----YELTQTLIDYRYSLLLNKQ----GYDIKAHIKID-----------TG- 129 (374)
T ss_dssp TTC--CS-EEEECSC-CCGGGHHHHHH-----TTCEEEECCHHHHHHHHTT----CCCEEEEEEEE-----------SS-
T ss_pred cCC--CC-CEEEEeC-CCHHHHHHHHH-----CCCEEEECCHHHHHHHHhc----CCCccEEEEEc-----------CC-
Confidence 984 43 4544454 46677888886 2357899999999998765 66788888886 33
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCC----ChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCC
Q 005135 285 EKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIP----STALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLG 360 (712)
Q Consensus 285 ~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~----d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlg 360 (712)
.+|||+. +++.++++++++.+.|+ +.|||+|++++.. +.....+.++...++...|++.|.++.++++|+.-+
T Consensus 130 -m~R~G~~-~e~~~~~~~i~~~~~l~-l~Gl~tH~~~ad~~~~~~~~~~~~q~~~f~~~~~~l~~~g~~~~~~~~~nSa~ 206 (374)
T 4ecl_A 130 -MHRLGFS-TEDKDKILAAFSLKHIK-VAGIFTHLCAADSLEENDVAFTNKQIGSFYKVLDWLKSSGLNIPKVHIQSSYG 206 (374)
T ss_dssp -SCSSSEE-SSCHHHHHHHTTCTTEE-EEEEECCCSCTTCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCCHHH
T ss_pred -CCcCccC-HHHHHHHHHHHhCCCce-EEEEEEECCccCcccCcCcHHHHHHHHHHHHHHHHHHHcCCCCCeEEecCCch
Confidence 3799999 88899999998888888 9999999999854 233345667777777778888899999999998766
Q ss_pred cCc
Q 005135 361 IDY 363 (712)
Q Consensus 361 v~Y 363 (712)
+.+
T Consensus 207 ~~~ 209 (374)
T 4ecl_A 207 LLN 209 (374)
T ss_dssp HHH
T ss_pred hhc
Confidence 654
No 34
>3e5p_A Alanine racemase; ALR, PLP, SCP, isomerase, pyridoxal phosph; HET: PLP EPE 2PE; 2.50A {Enterococcus faecalis} PDB: 3e6e_A*
Probab=99.48 E-value=1.6e-13 Score=149.67 Aligned_cols=162 Identities=12% Similarity=0.124 Sum_probs=135.3
Q ss_pred CCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccC----CcHHHHHHHHHcCCCCccceEecCHHHHHH
Q 005135 126 LQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCN----QDRFVVEDIVKFGSQFRFGLEAGSKPELLL 201 (712)
Q Consensus 126 ~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN----~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~ 201 (712)
+....+++|++.|++|++++++.++ .+.++++.+|+| ....|++.+.+.|+ -+|.|++..|+..
T Consensus 6 ~r~~~~~Idl~al~~N~~~l~~~~~---------~~~~l~avvKanaYGhg~~~va~~l~~~G~---~~f~va~~~Ea~~ 73 (371)
T 3e5p_A 6 HRPTRLHIDTQAITENVQKECQRLP---------EGTALFAVVKANGYGHGAVESAKAAKKGGA---TGFCVALLDEAIE 73 (371)
T ss_dssp TSSCEEEECHHHHHHHHHHHHHSSC---------SSSEEEEECHHHHHTTCHHHHHHHHHHTTC---CCEEESSHHHHHH
T ss_pred cCCeEEEEEHHHHHHHHHHHHHhcC---------CCCEEEEEECcccccCCHHHHHHHHHHcCC---CEEEEEeHHHHHH
Confidence 3445688999999999999998774 247899999994 78999999999996 4899999999999
Q ss_pred HHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHH-HHHHHhcCCCceEEEEEeeCCCCCCCcc
Q 005135 202 AMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLV-IEISKKLNVRPVIGARAKLRTKHSGHFG 280 (712)
Q Consensus 202 Al~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I-~~~a~~~g~~~~IgLRVn~~~~~~~~~~ 280 (712)
.+++|+ ++ .|++-++ +..++++.+++. ++.++|||+++++.| .+.+++.+++.+|.|+|+
T Consensus 74 lr~~G~--~~-~Ilvlg~-~~~~~~~~~~~~-----~i~~~V~s~~~l~~l~~~~a~~~~~~~~V~lkvd---------- 134 (371)
T 3e5p_A 74 LREAGV--QD-PILILSV-VDLAYVPLLIQY-----DLSVTVATQEWLEAALQQLTPESNTPLRVHLKVD---------- 134 (371)
T ss_dssp HHTTTC--CS-CEEEEEE-CCGGGHHHHHHH-----TCEEEECCHHHHHHHHHHHCSCCSCCBCEEEEBC----------
T ss_pred HHhcCC--CC-CEEEEcC-CCHHHHHHHHHC-----CCEEEECCHHHHHHHHHHHHHHcCCceEEEEEEC----------
Confidence 999985 43 3544455 566778888863 357899999999999 998888888888998885
Q ss_pred ccCCCCCCCCCCH-HHHHHHHHHHHHcCCCCceeEEEEecCCC
Q 005135 281 STSGEKGKFGLTT-TQILRVVKKLEVAEMLDCFQLLHFHIGSQ 322 (712)
Q Consensus 281 ~tgg~~SKFGl~~-~e~~~~l~~l~~~~~L~~l~GLHfHiGSq 322 (712)
|| .+|||+.+ +++.++++++++.+.++ +.|||+|+++.
T Consensus 135 -tG--m~R~G~~~~ee~~~~~~~i~~~~~l~-l~Gl~tH~a~a 173 (371)
T 3e5p_A 135 -TG--MGRIGFLTPEETKQAVRFVQSHKEFL-WEGIFTHFSTA 173 (371)
T ss_dssp -SS--SCSSSBCSSHHHHHHHHHHHHSTTBC-CCEEECCCSCT
T ss_pred -CC--CCcCCCCCHHHHHHHHHHHHhCCCcc-EEEEEEEcCCC
Confidence 33 37999998 99999999999998898 99999999986
No 35
>3kw3_A Alanine racemase; niaid, ssgcid, seattle structural genomics center for infect disease, iodide SOAK, LLP, CAT-scratch DI isomerase; HET: LLP; 2.04A {Bartonella henselae}
Probab=99.45 E-value=6.3e-13 Score=145.18 Aligned_cols=161 Identities=12% Similarity=0.115 Sum_probs=133.9
Q ss_pred CCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCC----cHHHHHHHHHcCCCCccceEecCHHHHHH
Q 005135 126 LQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQ----DRFVVEDIVKFGSQFRFGLEAGSKPELLL 201 (712)
Q Consensus 126 ~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~----~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~ 201 (712)
...|.+++|++.|++|++++++.++. .++++.+|+|. ...|++.+.+.|+ -+|.|++..|+..
T Consensus 18 ~~~~~~~Idl~al~~N~~~l~~~~~~----------~~l~aVvKAnaYGHG~~~va~~l~~~G~---~~f~Va~~~Ea~~ 84 (376)
T 3kw3_A 18 PATAIATIDVRAIVANYRTLAQHVAP----------TECSAVVKANAYGLGAHKIAPALYQAGC---RTFFVAQIEEALQ 84 (376)
T ss_dssp CCSEEEEECHHHHHHHHHHHHHHHTT----------SEECEECHHHHHTTCHHHHHHHHHHTTC---CEEEESSHHHHHH
T ss_pred CCCeEEEEcHHHHHHHHHHHHHhCCC----------CEEEEEECCccccCCHHHHHHHHHHcCC---CEEEEeEHHHHHH
Confidence 46778999999999999999988752 68999999985 5889999999996 4899999999999
Q ss_pred HHHhc-CCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCcc
Q 005135 202 AMSCL-CKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFG 280 (712)
Q Consensus 202 Al~~G-~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~ 280 (712)
.+++| + + ..|++-++. ..++++.+++ .++.++|||+++++.|.+.+++.+++.+|.|+|+
T Consensus 85 lr~ag~~--~-~~ilvl~~~-~~~~~~~~~~-----~~i~~~V~s~~~l~~l~~~a~~~~~~~~V~lkVd---------- 145 (376)
T 3kw3_A 85 LKAVLPE--N-VMIALLNGF-PHKAEEFVAQ-----SGIIPLLNSWSTIEDWQTLCQKKNKKFPAIIQVD---------- 145 (376)
T ss_dssp HHHHSCS--S-CEEEETTCC-CTTCHHHHHH-----TTCEEEECSHHHHHHHHHHHHHHTCCCEEEEEBC----------
T ss_pred HHhcCCC--C-CCEEEEeCC-CHHHHHHHHH-----CCCEEEECCHHHHHHHHHHHHHcCCCeEEEEEEC----------
Confidence 98887 4 3 345555654 3455777775 3357899999999999999988888889998885
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCC
Q 005135 281 STSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQ 322 (712)
Q Consensus 281 ~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSq 322 (712)
|| .+|||+.++|+.++++.+++.+.++ +.|||+|+++.
T Consensus 146 -tG--m~R~G~~~~e~~~l~~~i~~~~~l~-l~Gl~tH~a~a 183 (376)
T 3kw3_A 146 -TN--MSRLGLDKKELQKLIKNPTIFEKAE-IKYILSHLANG 183 (376)
T ss_dssp -SS--CCSSSBCHHHHHHHHHCCTHHHHSE-EEEEECCCSST
T ss_pred -CC--CCcccCCHHHHHHHHHHHHhCCCCc-EEEEEEECCCC
Confidence 33 3799999999999999888777788 99999999985
No 36
>3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A*
Probab=99.40 E-value=1.6e-11 Score=126.60 Aligned_cols=199 Identities=10% Similarity=0.029 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHHHHhHHhcCCC-CcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHhcCCCC-CCc-
Q 005135 137 VLRDRLESLHSAFEFAIQTQGYE-ARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGS-PEA- 213 (712)
Q Consensus 137 ~L~~ni~~l~~af~~a~~~~~y~-~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~G~~~~-p~~- 213 (712)
.|++|++++++....+.+..+-. .+++++-.+|+.+ ...++.+.+.|+ -.|-++...|+..-...+.... |.-
T Consensus 4 ~i~~nl~~i~~~i~~a~~~~~r~~~~v~l~AV~Kahg-~~~i~~~~~~G~---~~fgen~vqEa~~kr~~~~~~~~~~i~ 79 (245)
T 3sy1_A 4 DIAHNLAQVRDKISAAATRCGRSPEEITLVAVSKTKP-ASAIAEAIDAGQ---RQFSEHYVQEGVDKIRHFQELGVTGLE 79 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEECTTCC-HHHHHHHHHTTC---CEEEESSHHHHHHHHHHHHHHTCCSCE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCCC-HHHHHHHHHcCC---CEEEEecHHHHHHHHHhhhhccCCCeE
Confidence 36778877777776655555542 3578888899977 456788889997 3677999999875555541000 122
Q ss_pred EEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCH
Q 005135 214 LLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTT 293 (712)
Q Consensus 214 II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~ 293 (712)
..+-++.. .+.++.++.. .+++.+|||++.++.|.+.+++.+++.+|.|+|| ||++.+|||+++
T Consensus 80 w~~iG~lq-~nk~~~~~~~----~~~i~sVds~~~a~~l~~~a~~~~~~~~V~lqVn-----------tG~e~~R~G~~~ 143 (245)
T 3sy1_A 80 WNFAGPLQ-SNKSRLVAEH----FDWCITIDRLRIATRLNDQRPAELPPLNVLIQIN-----------ISDENSKSGIQL 143 (245)
T ss_dssp EEECSCCC-GGGHHHHHHH----CSEEEEECCHHHHHHHHHHSCTTSCCEEEEEEBC-----------CSCTTCCSSBCG
T ss_pred EeecCCCC-hHHHHHHHHH----CCEEEecCCHHHHHHHHHHHHHcCCCceEEEEEE-----------CCCCcCCcCCCH
Confidence 23434433 3345555431 4567899999999999999988888899999996 567789999999
Q ss_pred HHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcC
Q 005135 294 TQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGG 357 (712)
Q Consensus 294 ~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGG 357 (712)
+++.++++.+.+.++|+ +.||+. ++++..+++.+++.++++.+++++|++.+.++++|++|+
T Consensus 144 ee~~~l~~~i~~~~~l~-l~Glmt-~~~~~~d~~~~~~~f~~l~~l~~~l~~~~~~~~~LSmGm 205 (245)
T 3sy1_A 144 AELDELAAAVAELPRLR-LRGLSA-IPAPESEYVRQFEVARQMAVAFAGLKTRYPHIDTLALGQ 205 (245)
T ss_dssp GGHHHHHHHHTTCTTEE-EEEEEC-CCCCCSCHHHHHHHHHHHHHHHHHHHTTSTTCCEEECCC
T ss_pred HHHHHHHHHHHcCCCCe-EEEEEE-eCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEeccC
Confidence 99999999999999998 999965 577888999999999999999999988777899999885
No 37
>4a3q_A Alanine racemase 1; isomerase, PLP-dependent enzymes; HET: PLP; 2.15A {Staphylococcus aureus} PDB: 3oo2_A
Probab=99.39 E-value=3e-12 Score=140.11 Aligned_cols=161 Identities=14% Similarity=0.112 Sum_probs=129.4
Q ss_pred CCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccC----CcHHHHHHHHHcCCCCccceEecCHHHHHH
Q 005135 126 LQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCN----QDRFVVEDIVKFGSQFRFGLEAGSKPELLL 201 (712)
Q Consensus 126 ~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN----~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~ 201 (712)
+..+..++|++.|++|++ +++.++. +.++++.+|+| ....|++.+.+.|+ -+|.|++..|+..
T Consensus 6 ~r~~~~~Idl~al~~N~~-l~~~~~~---------~~~l~aVvKAnaYGhg~~~va~~l~~~G~---~~f~Va~~~Ea~~ 72 (382)
T 4a3q_A 6 YRSAYMNVDLNAVASNFK-VFSTLHP---------NKTVMAVVKANAYGLGSVKVARHLMENGA---TFFAVATLDEAIE 72 (382)
T ss_dssp CSSEEEEEEHHHHHHHHH-HHHHHCT---------TSEEEEECHHHHHTTCHHHHHHHHHHTTC---CEEEESSHHHHHH
T ss_pred cCCEEEEEEHHHHHHHHH-HHhhcCC---------CCEEEEEEeeccccCCHHHHHHHHHHCCC---CEEEEeEHHHHHH
Confidence 344567799999999999 9987742 47899999996 45889999999996 4899999999999
Q ss_pred HHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCC-CceEEEEEeeCCCCCCCcc
Q 005135 202 AMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNV-RPVIGARAKLRTKHSGHFG 280 (712)
Q Consensus 202 Al~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~-~~~IgLRVn~~~~~~~~~~ 280 (712)
.+++|+ +. .|++-++ .+.++++.+++ . ++.++|+|+++++.|.+.+++.++ +.+|.|+|+
T Consensus 73 lr~aGi--~~-~ilvlg~-~~~~~~~~~~~---~--~i~~~V~s~~~l~~l~~~a~~~~~~~~~V~lkvD---------- 133 (382)
T 4a3q_A 73 LRMHGI--TA-KILVLGV-LPAKDIDKAIQ---H--RVALTVPSKQWLKEAIKNISGEQEKKLWLHIKLD---------- 133 (382)
T ss_dssp HHTTTC--CS-EEEECSC-CCGGGHHHHHH---T--TCBEEECCHHHHHHHHHTCCTTCCSCEEEEEEBC----------
T ss_pred HHhCCC--CC-CEEEEeC-CCHHHHHHHHH---c--CCEEEECCHHHHHHHHHHHHHcCCCceeEEEEEC----------
Confidence 999984 33 4544444 46677888876 2 346899999999999998888887 778888875
Q ss_pred ccCCCCCCCCCCHHH-HHHHHHHHHHcCCCCceeEEEEecCCC
Q 005135 281 STSGEKGKFGLTTTQ-ILRVVKKLEVAEMLDCFQLLHFHIGSQ 322 (712)
Q Consensus 281 ~tgg~~SKFGl~~~e-~~~~l~~l~~~~~L~~l~GLHfHiGSq 322 (712)
|| .+|||+.+++ +.++++++++.+.++ +.|||+|+++.
T Consensus 134 -tG--m~R~G~~~~e~~~~~~~~i~~~~~l~-l~Gl~tH~a~a 172 (382)
T 4a3q_A 134 -TG--MGRLGIKDTNTYQEVIEIIQQYEQLV-FEGVFTHFACA 172 (382)
T ss_dssp -SS--SSSSSBCCHHHHHHHHHHHHHCTTEE-EEEEECCC---
T ss_pred -CC--CCcCCCChHHHHHHHHHHHHhCCCce-EEEEEEECcCC
Confidence 33 3799999876 999999999999888 99999999974
No 38
>3mub_A Alanine racemase; alpha/beta barrel, extended beta-strand domain, pyridoxal PH cofactor, carba lysine, isomerase; HET: LLP KCX; 2.00A {Streptococcus pneumoniae} PDB: 3s46_A*
Probab=99.37 E-value=9.9e-12 Score=135.37 Aligned_cols=159 Identities=11% Similarity=0.102 Sum_probs=129.8
Q ss_pred CCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccC----CcHHHHHHHHHcCCCCccceEecCHHHHHH
Q 005135 126 LQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCN----QDRFVVEDIVKFGSQFRFGLEAGSKPELLL 201 (712)
Q Consensus 126 ~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN----~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~ 201 (712)
+....+++|++.|++|++++++.++. +.++++.+|+| ....|.+.+.+. + -+|.|++..|+..
T Consensus 6 ~r~~~~~Idl~al~~N~~~l~~~~~~---------~~~l~aVvKanaYGhg~~~va~~l~~~-~---~~f~va~~~Ea~~ 72 (367)
T 3mub_A 6 HRPTKALIHLGAIRQNIQQMGAHIPQ---------GTLKLAVVKANAYGHGAVAVAKAIQDD-V---DGFCVSNIDEAIE 72 (367)
T ss_dssp TSSCEEEECHHHHHHHHHHHHHTSCT---------TCEEEEECHHHHHTTCHHHHHHHHGGG-C---SEEEESSHHHHHH
T ss_pred cCCeEEEEeHHHHHHHHHHHHHhCCC---------CCEEEEEECcccccCCHHHHHHHHHHh-C---CeEEEeEHHHHHH
Confidence 44556889999999999999987642 47899999995 558899998887 5 4899999999999
Q ss_pred HHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccc
Q 005135 202 AMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGS 281 (712)
Q Consensus 202 Al~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~ 281 (712)
.+++|+ +.. |++-++ .+.++++.+++ .++.++|+|+++++.|.+.+++. ++.+|.|+|+
T Consensus 73 lr~~G~--~~~-ilvlg~-~~~~~~~~~~~-----~~l~~~V~s~~~l~~l~~~a~~~-~~~~V~lkvd----------- 131 (367)
T 3mub_A 73 LRQAGL--SKP-ILILGV-SEIEAVALAKE-----YDFTLTVAGLEWIQALLDKEVDL-TGLTVHLKID----------- 131 (367)
T ss_dssp HHHTTC--CSC-EEEEEE-CCGGGHHHHHH-----TTEEEEECCHHHHHHHHHTTCCC-TTCEEEEEEC-----------
T ss_pred HHHcCC--CCC-EEEEcC-CCHHHHHHHHH-----cCCEEEECCHHHHHHHHHHHHhc-CCeeEEEEEC-----------
Confidence 999985 434 444444 45667888876 34679999999999999988766 6788888885
Q ss_pred cCCCCCCCCCCH-HHHHHHHHHHHHcCCCCceeEEEEecCCC
Q 005135 282 TSGEKGKFGLTT-TQILRVVKKLEVAEMLDCFQLLHFHIGSQ 322 (712)
Q Consensus 282 tgg~~SKFGl~~-~e~~~~l~~l~~~~~L~~l~GLHfHiGSq 322 (712)
|| .+|||+.+ +++.++++++++ +.++ +.||++|+++.
T Consensus 132 tG--m~R~G~~~~ee~~~~~~~i~~-~~l~-l~Gl~tH~a~a 169 (367)
T 3mub_A 132 SG--MGRIGFREASEVEQAQDLLQQ-HGVC-VEGIFTHFATA 169 (367)
T ss_dssp SS--CCSSSBCSHHHHHHHHHHHHH-TTCE-EEEEEECCSST
T ss_pred CC--CCcCCCCcHHHHHHHHHHHcc-CCcE-EEEEEEEccCC
Confidence 33 37999998 999999999999 8898 99999999985
No 39
>3hur_A Alanine racemase; structural genomics, isomerase, pyridoxal phosphate, PSI-2, protein structure initiative; 2.50A {Oenococcus oeni psu-1}
Probab=99.08 E-value=8.1e-10 Score=121.32 Aligned_cols=157 Identities=11% Similarity=0.058 Sum_probs=125.9
Q ss_pred CCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccC----CcHHHHHHHHHc-CCCCccceEecCHHHHH
Q 005135 126 LQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCN----QDRFVVEDIVKF-GSQFRFGLEAGSKPELL 200 (712)
Q Consensus 126 ~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN----~~~~Vl~~l~~~-G~~~~~GlEvaS~~EL~ 200 (712)
+..+.+.+|++.|++|++++++. . .+.++++.+|+| ....|.+.+.+. |+ -+|.|++..|..
T Consensus 7 ~r~~~l~Idl~al~~N~~~l~~~-~---------~~~~l~aVvKAnaYGHG~~~va~~l~~~~G~---~~f~Va~~~Ea~ 73 (395)
T 3hur_A 7 HRPTWVSVDLDAAAHNLQEIREW-T---------KAKKVYAVLKADGYGLGAIPLAKAFQETASA---DALIVSNLDEAL 73 (395)
T ss_dssp SCCEEEEEEHHHHHHHHHHHHHH-H---------TCSEEEEECCHHHHHTCHHHHHHHHHHTTCC---SEEEESCHHHHH
T ss_pred cCCeEEEEeHHHHHHHHHHHHhc-C---------CCCEEEEEECCCccCCCHHHHHHHHHhcCCC---CEEEEeeHHHHH
Confidence 34445779999999999999887 3 257899999997 468899999999 97 489999999999
Q ss_pred HHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCcc
Q 005135 201 LAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFG 280 (712)
Q Consensus 201 ~Al~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~ 280 (712)
..+++|+ +. .|++-++ ...++++.++. .++..+|+|+++++.|.+. + + +.+|.|.|+
T Consensus 74 ~lr~aGi--~~-~Ilvlg~-~~~~~~~~~~~-----~~l~~~V~s~~~l~~l~~~-~--~-~~~V~lkvD---------- 130 (395)
T 3hur_A 74 ELRQADL--TL-PIWVLGA-WDYSDLKLFID-----HDIVITIPSLAWLQNLPDF-E--G-TLKVSLAID---------- 130 (395)
T ss_dssp HHHHTTC--CS-CEEESSC-CCGGGHHHHHH-----TTEEEEECCHHHHHTCCCC-S--S-CEEEEEEBC----------
T ss_pred HHHhcCC--CC-CEEEEcC-CCHHHHHHHHH-----cCCEEEECCHHHHHHHHHh-c--C-CCcEEEEEc----------
Confidence 9999984 33 4555555 45667888776 3567899999999998765 3 5 666777664
Q ss_pred ccCCCCCCCCCCHHH-HHHHHHHHHHcCCCCceeEEEEecCCC
Q 005135 281 STSGEKGKFGLTTTQ-ILRVVKKLEVAEMLDCFQLLHFHIGSQ 322 (712)
Q Consensus 281 ~tgg~~SKFGl~~~e-~~~~l~~l~~~~~L~~l~GLHfHiGSq 322 (712)
|| .+|+|+.+++ +.++++++++.+.++ +.||+.|.++.
T Consensus 131 -tG--m~R~G~~~~e~~~~~~~~i~~~~~l~-l~Gl~TH~a~a 169 (395)
T 3hur_A 131 -TG--MTRIGFDKADEISAAKKIIDKNPQLD-LFSVYTHFATA 169 (395)
T ss_dssp -CS--SCSSSBCCHHHHHHHHHHHHHCTTEE-EEEEECCCTTT
T ss_pred -CC--CCCcCCChHHHHHHHHHHHHhCCCce-EEEEEEeCcCC
Confidence 33 4899999887 999999999999888 99999999975
No 40
>3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium, TIM barrel; HET: PLP; 1.90A {Agrobacterium tumefaciens}
Probab=98.96 E-value=8.8e-08 Score=98.56 Aligned_cols=189 Identities=13% Similarity=0.093 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHHhHHhcCCC-CcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHhcCCCCCCc-EE
Q 005135 138 LRDRLESLHSAFEFAIQTQGYE-ARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEA-LL 215 (712)
Q Consensus 138 L~~ni~~l~~af~~a~~~~~y~-~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~G~~~~p~~-II 215 (712)
|.+|++++++....+.+..+-. .+++++--+|+.+.. .++.+.+.|+ -.|-++...|+..-.+.+....|.. ..
T Consensus 6 i~~nl~~v~~~i~~a~~~~~r~~~~v~l~AVvKahga~-~i~~~~~~G~---~~fgen~vqEa~~kr~~~~~~~~~i~wh 81 (244)
T 3r79_A 6 IEARLEDVRQRIADVAEKSGRKAADVALVAVSKTFDAE-AIQPVIDAGQ---RVFGENRVQEAQGKWPALKEKTSDIELH 81 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCGGGSEEEEECTTCCHH-HHHHHHHTTC---CEEEESCHHHHHHHHHHHHHHSTTCEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCcCHH-HHHHHHHCCC---CEEEEeeHHHHHHHHHhccccCCCeEEE
Confidence 6677777777666555544442 357888889997764 5688889997 3678999999876555541000222 23
Q ss_pred EeCCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHH
Q 005135 216 VCNGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQ 295 (712)
Q Consensus 216 ~~ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e 295 (712)
+-++.. .+.++.++.. .+++.+|||++.++.|.+.+++.+++.+|.|.|| ||++.+|+|+.+++
T Consensus 82 ~iG~lq-~nk~~~~v~~----~~~i~sVds~~~a~~L~~~a~~~g~~~~V~LqVd-----------tG~e~~R~Gv~~ee 145 (244)
T 3r79_A 82 LIGPLQ-SNKAADAVAL----FDVVESIDREKIARALSEECARQGRSLRFYVQVN-----------TGLEPQKAGIDPRE 145 (244)
T ss_dssp ECSCCC-GGGHHHHHHH----CSEEEEECSHHHHHHHHHHHHHHTCCCEEEEEBC-----------TTCCTTSCSBCHHH
T ss_pred ecCCCC-HHHHHHHHHH----CCEEEeeCCHHHHHHHHHHHHHcCCCceEEEEEE-----------CCCCcCCCCCCHHH
Confidence 444433 3445655531 3567899999999999999998888899999985 56778999999999
Q ss_pred HHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEc
Q 005135 296 ILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIG 356 (712)
Q Consensus 296 ~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIG 356 (712)
+.++++.+.+.+.|+ +.||..|... ..+++ ..++++.++...+ ++..|.+|
T Consensus 146 ~~~l~~~i~~l~~L~-l~GlmTh~a~-~dd~~---~~f~~l~~l~~~l-----~~~~lSmG 196 (244)
T 3r79_A 146 TVAFVAFCRDELKLP-VEGLMCIPPA-EENPG---PHFALLAKLAGQC-----GLEKLSMG 196 (244)
T ss_dssp HHHHHHHHHHTSCCC-CCEEECCCCT-TSCSH---HHHHHHHHHHHHH-----TCCEEECC
T ss_pred HHHHHHHHHcCCCCE-EEEEEecCCC-CCCHH---HHHHHHHHHHHhC-----CCCEEEee
Confidence 999999999999998 9999887644 45554 3344444444333 46777766
No 41
>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A*
Probab=98.91 E-value=4.6e-08 Score=101.37 Aligned_cols=194 Identities=11% Similarity=0.054 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHHHhHHhcCC---CCcceeeeeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHhcCCCCCCcE
Q 005135 138 LRDRLESLHSAFEFAIQTQGY---EARYQGVFPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEAL 214 (712)
Q Consensus 138 L~~ni~~l~~af~~a~~~~~y---~~~~~~~YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~G~~~~p~~I 214 (712)
|++|++++++....+.+..+- ..+.++.--+|+.+...|. .+.+.|+ -+|-|+...|+..-... + +. .|
T Consensus 14 i~~nl~~v~~~i~~~~~~~~r~~~~~~v~l~aVvK~hg~~~i~-~~~~aG~---~~fgva~vqEa~~~r~~-~--~~-~l 85 (256)
T 1ct5_A 14 LIAQYESVREVVNAEAKNVHVNENASKILLLVVSKLKPASDIQ-ILYDHGV---REFGENYVQELIEKAKL-L--PD-DI 85 (256)
T ss_dssp HHHHHHHHHHHHHHHHHTC-------CCEEEEECTTSCHHHHH-HHHHHTC---CEEEECCHHHHHHHHHH-S--CT-TC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCEEEEEECCCCHHHHH-HHHHcCC---CEEEEEcHHHHHHHHHh-c--cc-Ce
Confidence 555555555555444333322 1246777789998876665 6888997 47899999999877776 3 32 35
Q ss_pred EEe--CCCCCHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCC---CceEEEEEeeCCCCCCCccccCCCCCCC
Q 005135 215 LVC--NGFKDAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNV---RPVIGARAKLRTKHSGHFGSTSGEKGKF 289 (712)
Q Consensus 215 I~~--ng~K~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~---~~~IgLRVn~~~~~~~~~~~tgg~~SKF 289 (712)
.+. ++. ..+.++.++... ..+++.+|||++.++.|.+.+.+.+. +.+|.|-|| ||++.+|+
T Consensus 86 ~~h~iG~l-q~nk~~~~~~~~--~~~l~~sVds~~~a~~l~~~a~~~~~~~~~l~V~lqVd-----------tG~e~~R~ 151 (256)
T 1ct5_A 86 KWHFIGGL-QTNKCKDLAKVP--NLYSVETIDSLKKAKKLNESRAKFQPDCNPILCNVQIN-----------TSHEDQKS 151 (256)
T ss_dssp EEEECSCC-CGGGHHHHHHCT--TEEEEEEECSHHHHHHHHHHHHHHCTTSCCEEEEEEBC-----------CSSSCCSS
T ss_pred eEeecCCC-CHHHHHHHhccc--ccCEEEEECCHHHHHHHHHHHHHcCCCCCCceEEEEEE-----------CCCCCCCc
Confidence 553 433 233355542111 25678999999999999999888877 677887774 67778999
Q ss_pred CCCH-HHHHHHHHHHH--HcCCCCceeEEEEec--CCCCCChHHHHHHHHHHHHHHHHHHHcCC-CCcEEEEc
Q 005135 290 GLTT-TQILRVVKKLE--VAEMLDCFQLLHFHI--GSQIPSTALLTDGVGEAAQIYCELVRLGA-NMQVIDIG 356 (712)
Q Consensus 290 Gl~~-~e~~~~l~~l~--~~~~L~~l~GLHfHi--GSqi~d~~~~~~ai~~~~~~~~~L~~~G~-~l~~IDIG 356 (712)
|+++ +++.++++.+. +.++|+ +.||+.|. +.. .+.+..+..++.+.++.+.+++ ++ ++..|..|
T Consensus 152 G~~~~~e~~~l~~~i~~~~~~~L~-l~Glmth~~~~~a-d~~~~~~~~f~~~~~~~~~l~~-~~~~~~~lS~G 221 (256)
T 1ct5_A 152 GLNNEAEIFEVIDFFLSEECKYIK-LNGLMTIGSWNVS-HEDSKENRDFATLVEWKKKIDA-KFGTSLKLSMG 221 (256)
T ss_dssp SBCCHHHHHHHHHHHHSTTCCSEE-EEEEECCCCCC----------HHHHHHHHHHHHHHH-HHCCCCEEECC
T ss_pred CcCchHHHHHHHHHHHHccCCCee-EEEEEEECCcCCC-CCHHHHHHHHHHHHHHHHHHHh-cCCCCCEEEec
Confidence 9999 89999999999 889998 99999999 532 2333345566777777777765 33 46666544
No 42
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=89.68 E-value=14 Score=38.11 Aligned_cols=103 Identities=16% Similarity=0.121 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCC-CCceeEEEEecCCC
Q 005135 244 EQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEM-LDCFQLLHFHIGSQ 322 (712)
Q Consensus 244 Ds~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~-L~~l~GLHfHiGSq 322 (712)
-+++++..+.+.+.+.|.. .|++. +|.| .+++.+..++++.+++.-- + -.++|+|-+++
T Consensus 152 ~~~~~~~~~~~~~~~~G~d---~i~l~----------Dt~G-----~~~P~~~~~lv~~l~~~~~~~--~l~~H~Hn~~G 211 (295)
T 1ydn_A 152 VTPQAVASVTEQLFSLGCH---EVSLG----------DTIG-----RGTPDTVAAMLDAVLAIAPAH--SLAGHYHDTGG 211 (295)
T ss_dssp CCHHHHHHHHHHHHHHTCS---EEEEE----------ETTS-----CCCHHHHHHHHHHHHTTSCGG--GEEEEEBCTTS
T ss_pred CCHHHHHHHHHHHHhcCCC---EEEec----------CCCC-----CcCHHHHHHHHHHHHHhCCCC--eEEEEECCCcc
Confidence 4788888888887788764 23332 1222 1578899999999986522 2 35899999887
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEc-CCCC-cCcCCCCCCCCCCCcCCCHHHHHHHH
Q 005135 323 IPSTALLTDGVGEAAQIYCELVRLGANMQVIDIG-GGLG-IDYDGSKSADSDLSVAYTLEEYASAV 386 (712)
Q Consensus 323 i~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIG-GGlg-v~Y~~s~~~~~~~s~~ysleeya~~I 386 (712)
.... ....++ +.|+ +.||.. +|+| .+|-..+.. |..+++++..+
T Consensus 212 la~a-n~l~Ai-----------~aG~--~~vd~sv~GlG~cp~a~g~~G------N~~~e~lv~~l 257 (295)
T 1ydn_A 212 RALD-NIRVSL-----------EKGL--RVFDASVGGLGGCPFAPGAKG------NVDTVAVVEML 257 (295)
T ss_dssp CHHH-HHHHHH-----------HHTC--CEEEEBTTCCSCBTTBTTSCC------BCBHHHHHHHH
T ss_pred hHHH-HHHHHH-----------HhCC--CEEEeccccCCCCCCCCCCcC------ChhHHHHHHHH
Confidence 4322 111111 2354 567753 4565 466543322 67888876643
No 43
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=83.47 E-value=36 Score=35.18 Aligned_cols=102 Identities=17% Similarity=0.129 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHc-CCCCceeEEEEecCCCC
Q 005135 245 QEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVA-EMLDCFQLLHFHIGSQI 323 (712)
Q Consensus 245 s~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~-~~L~~l~GLHfHiGSqi 323 (712)
+++++..+.+.+.+.|.. .|++. +|-| ..++.++.++++.+++. +.+ -.++|+|-+++.
T Consensus 157 ~~~~~~~~~~~~~~~G~d---~i~l~----------DT~G-----~~~P~~~~~lv~~l~~~~~~~--~l~~H~Hn~~Gl 216 (302)
T 2ftp_A 157 DPRQVAWVARELQQMGCY---EVSLG----------DTIG-----VGTAGATRRLIEAVASEVPRE--RLAGHFHDTYGQ 216 (302)
T ss_dssp CHHHHHHHHHHHHHTTCS---EEEEE----------ESSS-----CCCHHHHHHHHHHHTTTSCGG--GEEEEEBCTTSC
T ss_pred CHHHHHHHHHHHHHcCCC---EEEEe----------CCCC-----CcCHHHHHHHHHHHHHhCCCC--eEEEEeCCCccH
Confidence 567777777777677764 23332 2222 25688999999998764 233 359999999875
Q ss_pred CChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEc-CCCCc-CcCCCCCCCCCCCcCCCHHHHHHHH
Q 005135 324 PSTALLTDGVGEAAQIYCELVRLGANMQVIDIG-GGLGI-DYDGSKSADSDLSVAYTLEEYASAV 386 (712)
Q Consensus 324 ~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIG-GGlgv-~Y~~s~~~~~~~s~~ysleeya~~I 386 (712)
.... ...+ .+.|+ +.||.. +|+|- ||-..+.. |.++|+.+..+
T Consensus 217 a~An-~laA-----------v~aGa--~~vd~tv~GlG~cp~a~gr~G------N~~~E~lv~~l 261 (302)
T 2ftp_A 217 ALAN-IYAS-----------LLEGI--AVFDSSVAGLGGCPYAKGATG------NVASEDVLYLL 261 (302)
T ss_dssp HHHH-HHHH-----------HHTTC--CEEEEBGGGCCBCGGGTTCBC------BCBHHHHHHHH
T ss_pred HHHH-HHHH-----------HHhCC--CEEEecccccCCCCCCCCCCC------ChhHHHHHHHH
Confidence 3221 1111 13454 567753 35664 56443332 67888876544
No 44
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=80.12 E-value=47 Score=34.96 Aligned_cols=110 Identities=24% Similarity=0.298 Sum_probs=64.8
Q ss_pred hccCCCcEEEEECC--------HHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHH
Q 005135 232 ARKLDLNVVIVLEQ--------EEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKL 303 (712)
Q Consensus 232 ~~~~G~~v~IvVDs--------~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l 303 (712)
+++.|..+.+.++. ++.+..+.+.+.+.|.. +|++. +|.| .+++.++.++++.+
T Consensus 146 ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~-----~i~l~--------DT~G-----~~~P~~v~~lv~~l 207 (337)
T 3ble_A 146 AIKSGLKINVYLEDWSNGFRNSPDYVKSLVEHLSKEHIE-----RIFLP--------DTLG-----VLSPEETFQGVDSL 207 (337)
T ss_dssp HHHTTCEEEEEEETHHHHHHHCHHHHHHHHHHHHTSCCS-----EEEEE--------CTTC-----CCCHHHHHHHHHHH
T ss_pred HHHCCCEEEEEEEECCCCCcCCHHHHHHHHHHHHHcCCC-----EEEEe--------cCCC-----CcCHHHHHHHHHHH
Confidence 34578888888877 55555565656666643 23332 2322 35789999999998
Q ss_pred HHc-CCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEc-CCCCcCcCCCCCCCCCCCcCCCHHH
Q 005135 304 EVA-EMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIG-GGLGIDYDGSKSADSDLSVAYTLEE 381 (712)
Q Consensus 304 ~~~-~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIG-GGlgv~Y~~s~~~~~~~s~~yslee 381 (712)
++. +.+ ..++|+|--.+. ++..+.. . .+.| .+.||.- +|||- ++ -|.++|+
T Consensus 208 ~~~~p~~--~i~~H~Hnd~Gl--------A~AN~la---A-v~aG--a~~vd~tv~GlG~-----~a------GN~~~E~ 260 (337)
T 3ble_A 208 IQKYPDI--HFEFHGHNDYDL--------SVANSLQ---A-IRAG--VKGLHASINGLGE-----RA------GNTPLEA 260 (337)
T ss_dssp HHHCTTS--CEEEECBCTTSC--------HHHHHHH---H-HHTT--CSEEEEBGGGCSS-----TT------CBCBHHH
T ss_pred HHhcCCC--eEEEEecCCcch--------HHHHHHH---H-HHhC--CCEEEEecccccc-----cc------cchhHHH
Confidence 764 344 359999987653 2222111 1 1235 5678833 34552 11 1678888
Q ss_pred HHHHH
Q 005135 382 YASAV 386 (712)
Q Consensus 382 ya~~I 386 (712)
++..+
T Consensus 261 lv~~L 265 (337)
T 3ble_A 261 LVTTI 265 (337)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 45
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=79.63 E-value=12 Score=37.74 Aligned_cols=102 Identities=16% Similarity=0.146 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCceeEEEE-ecCCC--CCChHHHHHHHHHHHHHHHHHHHcCCCCcEEE--EcCCCCcCcCC
Q 005135 291 LTTTQILRVVKKLEVAEMLDCFQLLHF-HIGSQ--IPSTALLTDGVGEAAQIYCELVRLGANMQVID--IGGGLGIDYDG 365 (712)
Q Consensus 291 l~~~e~~~~l~~l~~~~~L~~l~GLHf-HiGSq--i~d~~~~~~ai~~~~~~~~~L~~~G~~l~~ID--IGGGlgv~Y~~ 365 (712)
++..++.++.+.+++.|+ . +...|. ...-. ..+.+...++++.+.+.++.+.++|.+ +|. +++|++.+|.+
T Consensus 44 ~~~~~~~~~~~~l~~~gl-~-i~~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~a~~lG~~--~v~~~~~~~~~~~~~~ 119 (294)
T 3vni_A 44 YSDIQINELKACAHGNGI-T-LTVGHGPSAEQNLSSPDPDIRKNAKAFYTDLLKRLYKLDVH--LIGGALYSYWPIDYTK 119 (294)
T ss_dssp CCHHHHHHHHHHHHHTTC-E-EEEEECCCGGGCTTCSCHHHHHHHHHHHHHHHHHHHHHTCC--EEEESTTSCSSCCTTS
T ss_pred cCHHHHHHHHHHHHHcCC-e-EEEeecCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC--eeeccccCCCCCcCCC
Confidence 456778888888888885 5 544332 11101 236666667777777777777777865 454 56777766642
Q ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHHHHH---HhcCCCCCeEEecCc
Q 005135 366 SKSADSDLSVAYTLEEYASAVVQAIRYVC---DRKNVKHPVLCSESG 409 (712)
Q Consensus 366 s~~~~~~~s~~ysleeya~~Iv~~l~~~~---~~~gv~~p~Li~EPG 409 (712)
. .+.++..+.+++.+++++ ++.|+ +|.+|+-
T Consensus 120 ~----------~~~~~~~~~~~~~l~~l~~~a~~~Gv---~l~lEn~ 153 (294)
T 3vni_A 120 T----------IDKKGDWERSVESVREVAKVAEACGV---DFCLEVL 153 (294)
T ss_dssp C----------CCHHHHHHHHHHHHHHHHHHHHHTTC---EEEEECC
T ss_pred C----------CCHHHHHHHHHHHHHHHHHHHHHcCC---EEEEEec
Confidence 1 244444455555555544 45676 7999974
No 46
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=78.70 E-value=63 Score=33.20 Aligned_cols=152 Identities=13% Similarity=0.109 Sum_probs=85.0
Q ss_pred eEecCHHHHHHHHHhcCCCCCCcEEEeCCCC----------CHH----HHHHHHH-hccCCCcEEEEEC-----------
Q 005135 191 LEAGSKPELLLAMSCLCKGSPEALLVCNGFK----------DAG----YITLALL-ARKLDLNVVIVLE----------- 244 (712)
Q Consensus 191 lEvaS~~EL~~Al~~G~~~~p~~II~~ng~K----------~~e----~I~~Al~-~~~~G~~v~IvVD----------- 244 (712)
.-+.....++.|+++|. +.+-+..+.. +.+ .++.+++ +++.|..+.+.+-
T Consensus 78 ~l~~~~~~i~~a~~ag~----~~v~i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~~v~~~l~~~~~~~~~~~~ 153 (298)
T 2cw6_A 78 VLTPNLKGFEAAVAAGA----KEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKI 153 (298)
T ss_dssp EECCSHHHHHHHHHTTC----SEEEEEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTCEEEEEEETTTCBTTTBSC
T ss_pred EEcCCHHhHHHHHHCCC----CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCC
Confidence 34567788888998884 2342222221 111 1122222 3346766544332
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHc-CCCCceeEEEEecCCCC
Q 005135 245 QEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVA-EMLDCFQLLHFHIGSQI 323 (712)
Q Consensus 245 s~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~-~~L~~l~GLHfHiGSqi 323 (712)
+++++..+.+.+.+.|.. .|++. +|.| .+++.++.++++.+++. +.+ -.++|+|-..+.
T Consensus 154 ~~~~~~~~~~~~~~~Ga~---~i~l~----------DT~G-----~~~P~~~~~lv~~l~~~~~~~--~i~~H~Hn~~Gl 213 (298)
T 2cw6_A 154 SPAKVAEVTKKFYSMGCY---EISLG----------DTIG-----VGTPGIMKDMLSAVMQEVPLA--ALAVHCHDTYGQ 213 (298)
T ss_dssp CHHHHHHHHHHHHHTTCS---EEEEE----------ETTS-----CCCHHHHHHHHHHHHHHSCGG--GEEEEEBCTTSC
T ss_pred CHHHHHHHHHHHHHcCCC---EEEec----------CCCC-----CcCHHHHHHHHHHHHHhCCCC--eEEEEECCCCch
Confidence 678888888888888764 23332 2332 36789999999998764 333 359999987653
Q ss_pred CChHHHHHHHHHHHHHHHHHHHcCCCCcEEEE-cCCCCc-CcCCCCCCCCCCCcCCCHHHHHHHH
Q 005135 324 PSTALLTDGVGEAAQIYCELVRLGANMQVIDI-GGGLGI-DYDGSKSADSDLSVAYTLEEYASAV 386 (712)
Q Consensus 324 ~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDI-GGGlgv-~Y~~s~~~~~~~s~~ysleeya~~I 386 (712)
. +..+.. . .+.|+ +++|. =+|+|- ||-..+.. |..+|+++..+
T Consensus 214 a--------~An~la---A-~~aGa--~~vd~tv~GlG~cp~a~g~aG------N~~~E~lv~~l 258 (298)
T 2cw6_A 214 A--------LANTLM---A-LQMGV--SVVDSSVAGLGGCPYAQGASG------NLATEDLVYML 258 (298)
T ss_dssp H--------HHHHHH---H-HHTTC--CEEEEBTTSCCCCTTSCSSCC------BCBHHHHHHHH
T ss_pred H--------HHHHHH---H-HHhCC--CEEEeecccccCCCCCCCCcC------ChhHHHHHHHH
Confidence 1 111111 1 13454 56664 245653 66543332 67888876655
No 47
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=72.26 E-value=21 Score=37.81 Aligned_cols=140 Identities=16% Similarity=0.171 Sum_probs=78.1
Q ss_pred HHHHHHHHHhcCCCCCCcEEEeCCC----CCHHHHHHHHHhccCCCcEEEEE-----CCHHHHHHHHHHHHhcCCCceEE
Q 005135 196 KPELLLAMSCLCKGSPEALLVCNGF----KDAGYITLALLARKLDLNVVIVL-----EQEEEVDLVIEISKKLNVRPVIG 266 (712)
Q Consensus 196 ~~EL~~Al~~G~~~~p~~II~~ng~----K~~e~I~~Al~~~~~G~~v~IvV-----Ds~~EL~~I~~~a~~~g~~~~Ig 266 (712)
...++.|.++|. +.+.+..+. ...+.++.|. +.|..+.+.+ -+++.+..+.+.+.+.|..
T Consensus 96 ~~~i~~a~~aGv----d~v~I~~~~s~~~~~~~~i~~ak---~~G~~v~~~~~~a~~~~~e~~~~ia~~~~~~Ga~---- 164 (345)
T 1nvm_A 96 VHDLKNAYQAGA----RVVRVATHCTEADVSKQHIEYAR---NLGMDTVGFLMMSHMIPAEKLAEQGKLMESYGAT---- 164 (345)
T ss_dssp HHHHHHHHHHTC----CEEEEEEETTCGGGGHHHHHHHH---HHTCEEEEEEESTTSSCHHHHHHHHHHHHHHTCS----
T ss_pred HHHHHHHHhCCc----CEEEEEEeccHHHHHHHHHHHHH---HCCCEEEEEEEeCCCCCHHHHHHHHHHHHHCCCC----
Confidence 556777778873 234333343 2233444443 4577776776 2356666666666666654
Q ss_pred EEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcC--CCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHH
Q 005135 267 ARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAE--MLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELV 344 (712)
Q Consensus 267 LRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~--~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~ 344 (712)
+|++. +|.| ..++.++.++++.+++.- .+ ..++|+|--.+. ++..+... .
T Consensus 165 -~i~l~--------DT~G-----~~~P~~v~~lv~~l~~~~~~~~--pi~~H~Hn~~G~--------avAn~laA----~ 216 (345)
T 1nvm_A 165 -CIYMA--------DSGG-----AMSMNDIRDRMRAFKAVLKPET--QVGMHAHHNLSL--------GVANSIVA----V 216 (345)
T ss_dssp -EEEEE--------CTTC-----CCCHHHHHHHHHHHHHHSCTTS--EEEEECBCTTSC--------HHHHHHHH----H
T ss_pred -EEEEC--------CCcC-----ccCHHHHHHHHHHHHHhcCCCc--eEEEEECCCccH--------HHHHHHHH----H
Confidence 23221 2222 235889999999998753 44 569999976653 22222111 2
Q ss_pred HcCCCCcEEEEc-CCCCcCcCCCCCCCCCCCcCCCHHHHHHHHH
Q 005135 345 RLGANMQVIDIG-GGLGIDYDGSKSADSDLSVAYTLEEYASAVV 387 (712)
Q Consensus 345 ~~G~~l~~IDIG-GGlgv~Y~~s~~~~~~~s~~ysleeya~~Iv 387 (712)
+.|+ +.+|.- +|+|-. + -|.++++++..+.
T Consensus 217 ~aGa--~~vd~tv~GlG~~-----a------GN~~le~lv~~L~ 247 (345)
T 1nvm_A 217 EEGC--DRVDASLAGMGAG-----A------GNAPLEVFIAVAE 247 (345)
T ss_dssp HTTC--CEEEEBGGGCSST-----T------CBCBHHHHHHHHH
T ss_pred HcCC--CEEEecchhccCC-----c------cCcCHHHHHHHHH
Confidence 3454 567743 455521 1 1678888776653
No 48
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*
Probab=71.88 E-value=68 Score=34.37 Aligned_cols=176 Identities=18% Similarity=0.160 Sum_probs=89.9
Q ss_pred ceeeeeeccCCcHHHHHHHHHcCCCCcc-ceEecCHHHHHHHHHhcCCCCCCcEEEeCC---------CCCHHH----HH
Q 005135 162 YQGVFPVKCNQDRFVVEDIVKFGSQFRF-GLEAGSKPELLLAMSCLCKGSPEALLVCNG---------FKDAGY----IT 227 (712)
Q Consensus 162 ~~~~YavKaN~~~~Vl~~l~~~G~~~~~-GlEvaS~~EL~~Al~~G~~~~p~~II~~ng---------~K~~e~----I~ 227 (712)
+.+-||.-.-+....++.+.+.+....+ .+--+....++.|+++|. + .+-+..+ .++.++ ++
T Consensus 42 IE~g~p~~~~~~~~~~~~i~~~~~~~~v~~~~r~~~~di~~a~~~g~--~--~v~i~~~~s~~~~~~~~~s~~e~l~~~~ 117 (382)
T 2ztj_A 42 IEVTTPVASPQSRKDAEVLASLGLKAKVVTHIQCRLDAAKVAVETGV--Q--GIDLLFGTSKYLRAPHGRDIPRIIEEAK 117 (382)
T ss_dssp EEECCTTSCHHHHHHHHHHHTSCCSSEEEEEEESCHHHHHHHHHTTC--S--EEEEEECC--------CCCHHHHHHHHH
T ss_pred EEEcCCcCCHHHHHHHHHHHhcCCCcEEEEEcccChhhHHHHHHcCC--C--EEEEEeccCHHHHHHhCCCHHHHHHHHH
Confidence 4454543222234466677766532211 122234667888888873 2 3322222 123332 22
Q ss_pred HHHH-hccCC--CcEEEEEC-----CHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHH
Q 005135 228 LALL-ARKLD--LNVVIVLE-----QEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRV 299 (712)
Q Consensus 228 ~Al~-~~~~G--~~v~IvVD-----s~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~ 299 (712)
.+++ +++.| ..+.+.++ +++.+..+.+.+.+. . . +|++. +|.| .+++.++.++
T Consensus 118 ~~v~~ak~~g~~~~v~~~~ed~~~~~~~~~~~~~~~~~~~-a--~---~i~l~--------DT~G-----~~~P~~~~~l 178 (382)
T 2ztj_A 118 EVIAYIREAAPHVEVRFSAEDTFRSEEQDLLAVYEAVAPY-V--D---RVGLA--------DTVG-----VATPRQVYAL 178 (382)
T ss_dssp HHHHHHHHHCTTSEEEEEETTTTTSCHHHHHHHHHHHGGG-C--S---EEEEE--------ETTS-----CCCHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHh-c--C---EEEec--------CCCC-----CCCHHHHHHH
Confidence 2222 33456 66667666 334444444444443 2 2 33332 2322 4578899999
Q ss_pred HHHHHHc--CCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEc-CCCCcCcCCCCCCCCCCCcC
Q 005135 300 VKKLEVA--EMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIG-GGLGIDYDGSKSADSDLSVA 376 (712)
Q Consensus 300 l~~l~~~--~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIG-GGlgv~Y~~s~~~~~~~s~~ 376 (712)
++.+++. ..+ ..++|+|--.+. ++..+.. . .+.| .+.||.- +|+|- +. -|
T Consensus 179 v~~l~~~~~~~~--~i~~H~Hnd~Gl--------AvAN~la---A-v~aG--a~~vd~tv~GlGe-----ra------GN 231 (382)
T 2ztj_A 179 VREVRRVVGPRV--DIEFHGHNDTGC--------AIANAYE---A-IEAG--ATHVDTTILGIGE-----RN------GI 231 (382)
T ss_dssp HHHHHHHHTTTS--EEEEEEBCTTSC--------HHHHHHH---H-HHTT--CCEEEEBGGGCSS-----TT------CB
T ss_pred HHHHHHhcCCCC--eEEEEeCCCccH--------HHHHHHH---H-HHhC--CCEEEEccccccc-----cc------cc
Confidence 9999886 544 469999977653 2222111 1 1335 5577732 34552 22 16
Q ss_pred CCHHHHHHHHH
Q 005135 377 YTLEEYASAVV 387 (712)
Q Consensus 377 ysleeya~~Iv 387 (712)
.++++.+..+.
T Consensus 232 ~~lE~vv~~L~ 242 (382)
T 2ztj_A 232 TPLGGFLARMY 242 (382)
T ss_dssp CBHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 88998876653
No 49
>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A
Probab=70.04 E-value=38 Score=35.56 Aligned_cols=64 Identities=11% Similarity=-0.156 Sum_probs=39.7
Q ss_pred cceEecCHHHHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEEEE----------CCHHHHHHHHHHHHh
Q 005135 189 FGLEAGSKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVIVL----------EQEEEVDLVIEISKK 258 (712)
Q Consensus 189 ~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~IvV----------Ds~~EL~~I~~~a~~ 258 (712)
.|.|++|..|++. .|. + .+....+..+.++++.. +|++. +-+ .+++.+..+.+.+++
T Consensus 5 ~g~d~s~~~~~e~---~g~-----~-~~~~~G~~~~~~~ilk~---~G~n~-vRlri~v~P~~g~~d~~~~~~~~~~ak~ 71 (334)
T 1fob_A 5 RGADISSLLLLED---EGY-----S-YKNLNGQTQALETILAD---AGINS-IRQRVWVNPSDGSYDLDYNLELAKRVKA 71 (334)
T ss_dssp EEEECTTHHHHHH---TTC-----C-CBCTTSCBCCHHHHHHH---HTCCE-EEEEECSCCTTCTTCHHHHHHHHHHHHH
T ss_pred eeeeHHHHHHHHH---cCC-----E-EECCCCCCchHHHHHHH---cCCCE-EEEEEEECCCCCccCHHHHHHHHHHHHH
Confidence 4899999999874 562 1 33322233344555443 56773 444 467888888888888
Q ss_pred cCCCceE
Q 005135 259 LNVRPVI 265 (712)
Q Consensus 259 ~g~~~~I 265 (712)
.|.++-+
T Consensus 72 ~Gl~v~l 78 (334)
T 1fob_A 72 AGMSLYL 78 (334)
T ss_dssp TTCEEEE
T ss_pred CCCEEEE
Confidence 8765433
No 50
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=64.35 E-value=99 Score=34.17 Aligned_cols=104 Identities=18% Similarity=0.110 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHH-hccCCCcEEEEE----C---CHHHHHHHHHHHHhcCCCceEEE
Q 005135 196 KPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALL-ARKLDLNVVIVL----E---QEEEVDLVIEISKKLNVRPVIGA 267 (712)
Q Consensus 196 ~~EL~~Al~~G~~~~p~~II~~ng~K~~e~I~~Al~-~~~~G~~v~IvV----D---s~~EL~~I~~~a~~~g~~~~IgL 267 (712)
...++.++++|. +.+-+.....+.+.++.+++ +++.|..+...+ . +++.+..+.+.+.+.|.. .|
T Consensus 103 ~~~v~~a~~~Gv----d~i~if~~~sd~~ni~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~Gad---~I 175 (464)
T 2nx9_A 103 DTFVERAVKNGM----DVFRVFDAMNDVRNMQQALQAVKKMGAHAQGTLCYTTSPVHNLQTWVDVAQQLAELGVD---SI 175 (464)
T ss_dssp HHHHHHHHHTTC----CEEEECCTTCCTHHHHHHHHHHHHTTCEEEEEEECCCCTTCCHHHHHHHHHHHHHTTCS---EE
T ss_pred HHHHHHHHhCCc----CEEEEEEecCHHHHHHHHHHHHHHCCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHCCCC---EE
Confidence 344666777763 33433333333344544444 344676554444 1 455566665655566653 13
Q ss_pred EEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCC
Q 005135 268 RAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQI 323 (712)
Q Consensus 268 RVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi 323 (712)
++. +|.| ++.+.++.++++.+++.-.+ ..++|+|--++.
T Consensus 176 ~l~----------DT~G-----~~~P~~v~~lv~~l~~~~~~--~i~~H~Hnd~Gl 214 (464)
T 2nx9_A 176 ALK----------DMAG-----ILTPYAAEELVSTLKKQVDV--ELHLHCHSTAGL 214 (464)
T ss_dssp EEE----------ETTS-----CCCHHHHHHHHHHHHHHCCS--CEEEEECCTTSC
T ss_pred EEc----------CCCC-----CcCHHHHHHHHHHHHHhcCC--eEEEEECCCCCh
Confidence 332 3333 46789999999998775333 469999987764
No 51
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*
Probab=61.51 E-value=1.6e+02 Score=32.13 Aligned_cols=136 Identities=19% Similarity=0.195 Sum_probs=77.5
Q ss_pred ceeeeeeccCCc-HHHHHHHHHcCCCCc-cceEecCHHHHHHHHHhcCCCCCCcE-EEe---------CCCCCHHHH---
Q 005135 162 YQGVFPVKCNQD-RFVVEDIVKFGSQFR-FGLEAGSKPELLLAMSCLCKGSPEAL-LVC---------NGFKDAGYI--- 226 (712)
Q Consensus 162 ~~~~YavKaN~~-~~Vl~~l~~~G~~~~-~GlEvaS~~EL~~Al~~G~~~~p~~I-I~~---------ng~K~~e~I--- 226 (712)
+.+-|| +++++ ...++.+.+.+.... +++-......++.|+++|. +.| ++. +-.|+.+++
T Consensus 78 IEvG~P-~asp~d~~~~~~i~~~~~~~~v~~~~r~~~~di~~A~~aG~----~~V~i~~s~Sd~~~~~~l~~s~~e~l~~ 152 (423)
T 3ivs_A 78 IELTSP-VASEQSRQDCEAICKLGLKCKILTHIRCHMDDARVAVETGV----DGVDVVIGTSQYLRKYSHGKDMTYIIDS 152 (423)
T ss_dssp EEECCT-TSCHHHHHHHHHHHTSCCSSEEEEEEESCHHHHHHHHHTTC----SEEEEEEEC-------------CHHHHH
T ss_pred EEEeec-ccCHHHHHHHHHHHhcCCCCEEEEeeccChhhHHHHHHcCC----CEEEEEeeccHHHHHHHcCCCHHHHHHH
Confidence 455555 45554 567788887764221 1223466788999999984 244 331 112443222
Q ss_pred -HHHHH-hccCCCcEEEEEC-----CHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHH
Q 005135 227 -TLALL-ARKLDLNVVIVLE-----QEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRV 299 (712)
Q Consensus 227 -~~Al~-~~~~G~~v~IvVD-----s~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~ 299 (712)
..++. +++.|..+.+.++ +++.+..+.+.+.+.|.. +|++. +|.| .+++.++.++
T Consensus 153 ~~~~v~~ak~~G~~V~~~~eda~r~d~~~~~~v~~~~~~~Ga~-----~i~l~--------DTvG-----~~~P~~v~~l 214 (423)
T 3ivs_A 153 ATEVINFVKSKGIEVRFSSEDSFRSDLVDLLSLYKAVDKIGVN-----RVGIA--------DTVG-----CATPRQVYDL 214 (423)
T ss_dssp HHHHHHHHHTTTCEEEEEEESGGGSCHHHHHHHHHHHHHHCCS-----EEEEE--------ETTS-----CCCHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEEccCcCCCHHHHHHHHHHHHHhCCC-----ccccC--------CccC-----cCCHHHHHHH
Confidence 11222 4557877777665 345566666666666653 23332 2332 4578899999
Q ss_pred HHHHHHcCCCCceeEEEEecCCC
Q 005135 300 VKKLEVAEMLDCFQLLHFHIGSQ 322 (712)
Q Consensus 300 l~~l~~~~~L~~l~GLHfHiGSq 322 (712)
++.+++...+ ..++|+|--.+
T Consensus 215 v~~l~~~~~~--~i~~H~Hnd~G 235 (423)
T 3ivs_A 215 IRTLRGVVSC--DIECHFHNDTG 235 (423)
T ss_dssp HHHHHHHCSS--EEEEEEBCTTS
T ss_pred HHHHHhhcCC--eEEEEECCCCc
Confidence 9998876444 46999997665
No 52
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=61.14 E-value=42 Score=35.47 Aligned_cols=54 Identities=17% Similarity=0.242 Sum_probs=37.2
Q ss_pred HHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCC
Q 005135 252 VIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGS 321 (712)
Q Consensus 252 I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGS 321 (712)
+.++.+..|....|++|+++.. |. .=|.+.++..++++.+.+.| ++ .||+|.|.
T Consensus 209 v~aVR~avG~d~pV~vRls~~~-----~~-------~~g~~~~~~~~la~~L~~~G-vd---~i~vs~g~ 262 (349)
T 3hgj_A 209 AQAVREVVPRELPLFVRVSATD-----WG-------EGGWSLEDTLAFARRLKELG-VD---LLDCSSGG 262 (349)
T ss_dssp HHHHHHHSCTTSCEEEEEESCC-----CS-------TTSCCHHHHHHHHHHHHHTT-CC---EEEEECCC
T ss_pred HHHHHHHhcCCceEEEEecccc-----cc-------CCCCCHHHHHHHHHHHHHcC-CC---EEEEecCC
Confidence 3333344565567999998752 11 11788899999999999887 34 68888754
No 53
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=59.33 E-value=68 Score=31.35 Aligned_cols=97 Identities=9% Similarity=-0.032 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCCCCCCCCCC
Q 005135 295 QILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSADSDLS 374 (712)
Q Consensus 295 e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s~~~~~~~s 374 (712)
++.++.+.+++.|+ . +..+|....-...+.....+.++.+.+.++.+.++|.+ +|-+-+|....
T Consensus 47 ~~~~~~~~l~~~gl-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~--~v~~~~g~~~~------------ 110 (278)
T 1i60_A 47 SLDDLAEYFQTHHI-K-PLALNALVFFNNRDEKGHNEIITEFKGMMETCKTLGVK--YVVAVPLVTEQ------------ 110 (278)
T ss_dssp CHHHHHHHHHTSSC-E-EEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHHHTCC--EEEEECCBCSS------------
T ss_pred CHHHHHHHHHHcCC-C-eeeeccccccccCCHHHHHHHHHHHHHHHHHHHHcCCC--EEEEecCCCCC------------
Confidence 34455566667775 5 77787754211136666666777777777777777865 44444433210
Q ss_pred cCCCHHHHHHHHHHHHHHHH---HhcCCCCCeEEecCcch
Q 005135 375 VAYTLEEYASAVVQAIRYVC---DRKNVKHPVLCSESGRA 411 (712)
Q Consensus 375 ~~ysleeya~~Iv~~l~~~~---~~~gv~~p~Li~EPGRa 411 (712)
.++.++..+.+++.+++++ .+.|+ +|.+|+-..
T Consensus 111 -~~~~~~~~~~~~~~l~~l~~~a~~~gv---~l~lEn~~~ 146 (278)
T 1i60_A 111 -KIVKEEIKKSSVDVLTELSDIAEPYGV---KIALEFVGH 146 (278)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHGGGTC---EEEEECCCC
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHhcCC---EEEEEecCC
Confidence 1244444445555555444 45666 899998643
No 54
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*
Probab=57.74 E-value=2.1e+02 Score=30.87 Aligned_cols=60 Identities=13% Similarity=0.076 Sum_probs=38.2
Q ss_pred cceEecCHHHHHHHHHhcCCCCCCcEEEe-CCCCCHHHHHHHHHhccCCCcEEEEE------------------CCHHHH
Q 005135 189 FGLEAGSKPELLLAMSCLCKGSPEALLVC-NGFKDAGYITLALLARKLDLNVVIVL------------------EQEEEV 249 (712)
Q Consensus 189 ~GlEvaS~~EL~~Al~~G~~~~p~~II~~-ng~K~~e~I~~Al~~~~~G~~v~IvV------------------Ds~~EL 249 (712)
.|+|+++..|++ +.|. . .+. +| +..+.++.... +|++ .|-+ .+++.+
T Consensus 26 ~G~Dis~~~~~e---~~G~-----~-y~~~~G-~~~d~~~ilk~---~G~N-~VRlrvwv~p~~~~g~~y~~g~~d~~~~ 91 (399)
T 1ur4_A 26 KGVDVSSIIALE---ESGV-----A-FYNESG-KKQDIFKTLKE---AGVN-YVRVRIWNDPYDANGNGYGGGNNDLEKA 91 (399)
T ss_dssp EEEECTTHHHHH---HTTC-----C-CBCTTS-CBCCHHHHHHH---TTCC-EEEEEECSCCBCTTCCBCSTTCCCHHHH
T ss_pred EEEehhhhHHHH---HcCC-----e-eeCCCC-ccchHHHHHHH---CCCC-EEEEeeecCCcccccCccCCCCCCHHHH
Confidence 699999999987 4562 1 233 23 22233444332 6777 4555 568888
Q ss_pred HHHHHHHHhcCCC
Q 005135 250 DLVIEISKKLNVR 262 (712)
Q Consensus 250 ~~I~~~a~~~g~~ 262 (712)
..+++.|++.|.+
T Consensus 92 ~~~a~~Ak~~GLk 104 (399)
T 1ur4_A 92 IQIGKRATANGMK 104 (399)
T ss_dssp HHHHHHHHHTTCE
T ss_pred HHHHHHHHHCCCE
Confidence 8888899888764
No 55
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*
Probab=55.73 E-value=68 Score=31.63 Aligned_cols=99 Identities=17% Similarity=0.140 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCceeEEEEecCC--C--CCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCC
Q 005135 291 LTTTQILRVVKKLEVAEMLDCFQLLHFHIGS--Q--IPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGS 366 (712)
Q Consensus 291 l~~~e~~~~l~~l~~~~~L~~l~GLHfHiGS--q--i~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s 366 (712)
++..++.++.+.+++.|+ + +..+.+|..- . ..+.+..++.++.+.+.++.+.++|.+ +|-+..|....
T Consensus 44 ~~~~~~~~~~~~l~~~gl-~-~~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~i~~A~~lGa~--~v~~~~g~~~~---- 115 (285)
T 1qtw_A 44 LTTQTIDEFKAACEKYHY-T-SAQILPHDSYLINLGHPVTEALEKSRDAFIDEMQRCEQLGLS--LLNFHPGSHLM---- 115 (285)
T ss_dssp CCHHHHHHHHHHHHHTTC-C-GGGBCCBCCTTCCTTCSSHHHHHHHHHHHHHHHHHHHHTTCC--EEEECCCBCTT----
T ss_pred CCHHHHHHHHHHHHHcCC-C-ceeEEecCCcccccCCCCHHHHHHHHHHHHHHHHHHHHcCCC--EEEECcCCCCC----
Confidence 566778888888888875 4 3223344321 1 135566677777777777777778864 56555443211
Q ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHHHHHh-cCCCCCeEEecCc
Q 005135 367 KSADSDLSVAYTLEEYASAVVQAIRYVCDR-KNVKHPVLCSESG 409 (712)
Q Consensus 367 ~~~~~~~s~~ysleeya~~Iv~~l~~~~~~-~gv~~p~Li~EPG 409 (712)
.++.++..+.+++.+++++.+ .|+ +|.+|+=
T Consensus 116 ---------~~~~~~~~~~~~~~l~~l~a~~~gv---~l~lEn~ 147 (285)
T 1qtw_A 116 ---------QISEEDCLARIAESINIALDKTQGV---TAVIENT 147 (285)
T ss_dssp ---------TSCHHHHHHHHHHHHHHHHHHCSSC---EEEEECC
T ss_pred ---------CCCHHHHHHHHHHHHHHHHhccCCC---EEEEecC
Confidence 124555556666677776644 444 8888873
No 56
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=55.38 E-value=56 Score=33.33 Aligned_cols=95 Identities=6% Similarity=-0.087 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCCCCCCCCCC
Q 005135 295 QILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSADSDLS 374 (712)
Q Consensus 295 e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s~~~~~~~s 374 (712)
++.++.+.+++.|+ . +..+|+-..-...+.....+.++.+.+.++...++|.+ +|-++| .+- . .+
T Consensus 77 ~~~~l~~~l~~~GL-~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~A~~lG~~--~v~~~~-~~~---~-~~------ 141 (305)
T 3obe_A 77 ASKDYKKMVDDAGL-R-ISSSHLTPSLREYTKENMPKFDEFWKKATDIHAELGVS--CMVQPS-LPR---I-EN------ 141 (305)
T ss_dssp CHHHHHHHHHHTTC-E-EEEEBCCCSCCCCCGGGHHHHHHHHHHHHHHHHHHTCS--EEEECC-CCC---C-SS------
T ss_pred CHHHHHHHHHHCCC-e-EEEeeccccccccchhhHHHHHHHHHHHHHHHHHcCCC--EEEeCC-CCC---C-CC------
Confidence 56666777778875 5 66676432111123333344444555555555566754 555653 221 0 00
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCc
Q 005135 375 VAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESG 409 (712)
Q Consensus 375 ~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPG 409 (712)
.-.++.+++.+.. +.+.++++|+ +|.+|+=
T Consensus 142 -~~~~~~~~~~l~~-l~~~a~~~Gv---~l~lEn~ 171 (305)
T 3obe_A 142 -EDDAKVVSEIFNR-AGEITKKAGI---LWGYHNH 171 (305)
T ss_dssp -HHHHHHHHHHHHH-HHHHHHTTTC---EEEEECC
T ss_pred -HHHHHHHHHHHHH-HHHHHHHcCC---EEEEecC
Confidence 1123444443333 2334556776 8999873
No 57
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*
Probab=55.12 E-value=72 Score=31.45 Aligned_cols=98 Identities=15% Similarity=0.194 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCceeEEEEecCC--CC--CChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCC
Q 005135 291 LTTTQILRVVKKLEVAEMLDCFQLLHFHIGS--QI--PSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGS 366 (712)
Q Consensus 291 l~~~e~~~~l~~l~~~~~L~~l~GLHfHiGS--qi--~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s 366 (712)
++..++.++.+.+++.|+ + +..+.+|..- .. .+.+...+.++.+.+.++.+.++|.+ +|-+..|....
T Consensus 44 ~~~~~~~~~~~~l~~~gl-~-~~~~~~h~~~~~~~~~~~~~~r~~~~~~~~~~i~~A~~lG~~--~v~~~~g~~~~---- 115 (287)
T 2x7v_A 44 PSDEAATKFKREMKKHGI-D-WENAFCHSGYLINLASPKDDIWQKSVELLKKEVEICRKLGIR--YLNIHPGSHLG---- 115 (287)
T ss_dssp CCHHHHHHHHHHHHHHTC-C-GGGEEEECCTTCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCC--EEEECCEECTT----
T ss_pred CCHHHHHHHHHHHHHcCC-C-cceeEEecccccccCCCCHHHHHHHHHHHHHHHHHHHHcCCC--EEEEecCCCCC----
Confidence 456778888888888885 4 4334444321 11 34555666777777777777777864 45554332210
Q ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHHHHHh-cCCCCCeEEecCc
Q 005135 367 KSADSDLSVAYTLEEYASAVVQAIRYVCDR-KNVKHPVLCSESG 409 (712)
Q Consensus 367 ~~~~~~~s~~ysleeya~~Iv~~l~~~~~~-~gv~~p~Li~EPG 409 (712)
.+.++-.+.+++.+++++++ .| .+|.+|+-
T Consensus 116 ----------~~~~~~~~~~~~~l~~l~~~~~g---v~l~lEn~ 146 (287)
T 2x7v_A 116 ----------TGEEEGIDRIVRGLNEVLNNTEG---VVILLENV 146 (287)
T ss_dssp ----------SCHHHHHHHHHHHHHHHHTTCCS---CEEEEECC
T ss_pred ----------CCHHHHHHHHHHHHHHHHcccCC---CEEEEeCC
Confidence 13455556677777777755 34 48888874
No 58
>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482}
Probab=54.35 E-value=1.3e+02 Score=31.50 Aligned_cols=93 Identities=15% Similarity=0.105 Sum_probs=49.4
Q ss_pred HHHHHHHhccCCCcEEEEECCHHHHHHHHHH---HHhcCCCceEEEEEeeCCC-CC--C-Ccccc-----CC-----CCC
Q 005135 225 YITLALLARKLDLNVVIVLEQEEEVDLVIEI---SKKLNVRPVIGARAKLRTK-HS--G-HFGST-----SG-----EKG 287 (712)
Q Consensus 225 ~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~---a~~~g~~~~IgLRVn~~~~-~~--~-~~~~t-----gg-----~~S 287 (712)
.++.+..+...|+..+.++++..+++...+. +++.|.. +++.+... +. . .+... .| ...
T Consensus 89 dv~~~~~a~~~Gvd~~ri~~~~~nle~~~~~v~~ak~~G~~----v~~~~~~~~~~~~~~~~l~~~~~~~~G~~~i~l~D 164 (320)
T 3dxi_A 89 DLNHLLLPIIGLVDMIRIAIDPQNIDRAIVLAKAIKTMGFE----VGFNVMYMSKWAEMNGFLSKLKAIDKIADLFCMVD 164 (320)
T ss_dssp GHHHHHGGGTTTCSEEEEEECGGGHHHHHHHHHHHHTTTCE----EEEEECCTTTGGGSTTSGGGGGGGTTTCSEEEEEC
T ss_pred hHHHHHHhhhcCCCEEEEEecHHHHHHHHHHHHHHHHCCCE----EEEEEEeCCCCCCHHHHHHHHHHhhCCCCEEEECc
Confidence 4554444444677777777777655555544 5666543 34433210 00 0 11100 00 001
Q ss_pred CCC-CCHHHHHHHHHHHHHcCCCCceeEEEEecCCCC
Q 005135 288 KFG-LTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQI 323 (712)
Q Consensus 288 KFG-l~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi 323 (712)
-.| +++.++.++++.+++.-.+ ..++|+|--.+.
T Consensus 165 t~G~~~P~~~~~lv~~l~~~~~~--~i~~H~Hn~~G~ 199 (320)
T 3dxi_A 165 SFGGITPKEVKNLLKEVRKYTHV--PVGFHGHDNLQL 199 (320)
T ss_dssp TTSCCCHHHHHHHHHHHHHHCCS--CEEEECBCTTSC
T ss_pred ccCCCCHHHHHHHHHHHHHhCCC--eEEEEeCCCCcc
Confidence 123 3567888999988875333 468999977653
No 59
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*
Probab=53.03 E-value=2.5e+02 Score=30.29 Aligned_cols=64 Identities=14% Similarity=0.176 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCceeEEEEe-------cCCCCC-------ChHHHHHHHH-HHHHHHHHHHHcCCCCcEEEE
Q 005135 291 LTTTQILRVVKKLEVAEMLDCFQLLHFH-------IGSQIP-------STALLTDGVG-EAAQIYCELVRLGANMQVIDI 355 (712)
Q Consensus 291 l~~~e~~~~l~~l~~~~~L~~l~GLHfH-------iGSqi~-------d~~~~~~ai~-~~~~~~~~L~~~G~~l~~IDI 355 (712)
.+.+.+.+++++++++|+ + +.|-|| .|+|.. +...+.+.+. .+..++..|++.|..+.++-|
T Consensus 86 ~d~~~~~~~a~~Ak~~GL-k--VlldfHysD~WadPg~Q~~P~aW~~~~~~~l~~~~~~yt~~~l~~l~~~g~~~~~vqv 162 (399)
T 1ur4_A 86 NDLEKAIQIGKRATANGM-K--LLADFHYSDFWADPAKQKAPKAWANLNFEDKKTALYQYTKQSLKAMKAAGIDIGMVQV 162 (399)
T ss_dssp CCHHHHHHHHHHHHHTTC-E--EEEEECSSSSCCSSSCCCCCGGGTTCCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCHHHHHHHHHHHHHCCC-E--EEEEeccCCccCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 467899999999999997 4 345566 455543 4445554443 566677778888888899988
Q ss_pred cC
Q 005135 356 GG 357 (712)
Q Consensus 356 GG 357 (712)
|=
T Consensus 163 GN 164 (399)
T 1ur4_A 163 GN 164 (399)
T ss_dssp SS
T ss_pred cc
Confidence 84
No 60
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}
Probab=52.56 E-value=1.4e+02 Score=31.85 Aligned_cols=170 Identities=14% Similarity=0.051 Sum_probs=87.2
Q ss_pred CCCCcEEEEcHHHHHHHHHHHHHHHHHhHHhcCCCCcceeeeeeccCC-cHHHHHHHHHcCCCCc-cceEecCHHHHHHH
Q 005135 125 GLQLPLIVRLPDVLRDRLESLHSAFEFAIQTQGYEARYQGVFPVKCNQ-DRFVVEDIVKFGSQFR-FGLEAGSKPELLLA 202 (712)
Q Consensus 125 g~~tPl~V~d~d~L~~ni~~l~~af~~a~~~~~y~~~~~~~YavKaN~-~~~Vl~~l~~~G~~~~-~GlEvaS~~EL~~A 202 (712)
|.++|-..+..+.-.+-+++|.+ .|+. .+.+-||. +++ ....++.+.+....-. .++--+....++.|
T Consensus 23 G~Q~~~~~~~~~~Kl~ia~~L~~--------~Gv~-~IE~g~p~-~~~~d~e~v~~i~~~~~~~~i~~l~r~~~~di~~a 92 (370)
T 3rmj_A 23 GEQSPGAAMTKEEKIRVARQLEK--------LGVD-IIEAGFAA-ASPGDFEAVNAIAKTITKSTVCSLSRAIERDIRQA 92 (370)
T ss_dssp CTTSTTCCCCHHHHHHHHHHHHH--------HTCS-EEEEEEGG-GCHHHHHHHHHHHTTCSSSEEEEEEESSHHHHHHH
T ss_pred cccCCCCCcCHHHHHHHHHHHHH--------cCCC-EEEEeCCC-CCHHHHHHHHHHHHhCCCCeEEEEecCCHHHHHHH
Confidence 35555444555444444444332 1432 35566664 443 4456666766542111 23443678889988
Q ss_pred HHhcCCCCCCcE-EEeCC---------CCCHHH-HHH---HH-HhccCCCcEEEEEC-----CHHHHHHHHHHHHhcCCC
Q 005135 203 MSCLCKGSPEAL-LVCNG---------FKDAGY-ITL---AL-LARKLDLNVVIVLE-----QEEEVDLVIEISKKLNVR 262 (712)
Q Consensus 203 l~~G~~~~p~~I-I~~ng---------~K~~e~-I~~---Al-~~~~~G~~v~IvVD-----s~~EL~~I~~~a~~~g~~ 262 (712)
+++..+...+.| +|... .++.++ ++. ++ .++..|..+.+..+ +++.+..+.+.+.+.|..
T Consensus 93 ~~al~~ag~~~v~if~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~~~~~~~~~~~~~~~~Ga~ 172 (370)
T 3rmj_A 93 GEAVAPAPKKRIHTFIATSPIHMEYKLKMKPKQVIEAAVKAVKIAREYTDDVEFSCEDALRSEIDFLAEICGAVIEAGAT 172 (370)
T ss_dssp HHHHTTSSSEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHTTTCSCEEEEEETGGGSCHHHHHHHHHHHHHHTCC
T ss_pred HHHHhhCCCCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEecCCCCccCHHHHHHHHHHHHHcCCC
Confidence 883210011344 33321 233332 222 22 24556776666664 344555555555566653
Q ss_pred ceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHc-CCCC-ceeEEEEecCCC
Q 005135 263 PVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVA-EMLD-CFQLLHFHIGSQ 322 (712)
Q Consensus 263 ~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~-~~L~-~l~GLHfHiGSq 322 (712)
+|++. +|.| .+++.++.++++.+++. +..+ ...++|+|--..
T Consensus 173 -----~i~l~--------DT~G-----~~~P~~~~~lv~~l~~~~~~~~~~~l~~H~Hnd~G 216 (370)
T 3rmj_A 173 -----TINIP--------DTVG-----YSIPYKTEEFFRELIAKTPNGGKVVWSAHCHNDLG 216 (370)
T ss_dssp -----EEEEE--------CSSS-----CCCHHHHHHHHHHHHHHSTTGGGSEEEEECBCTTS
T ss_pred -----EEEec--------CccC-----CcCHHHHHHHHHHHHHhCCCcCceEEEEEeCCCCC
Confidence 34432 2332 46788999999988764 4310 146999997665
No 61
>1xla_A D-xylose isomerase; isomerase(intramolecular oxidoreductase); 2.30A {Arthrobacter SP} SCOP: c.1.15.3 PDB: 1die_A* 1did_A 1xlb_A 1xlc_A* 1xld_A* 1xle_A 1xlf_A* 1xlg_A* 1xlh_A 1xli_A* 1xlj_A* 1xlk_A 1xll_A 1xlm_A* 4xia_A* 5xia_A*
Probab=51.16 E-value=1.2e+02 Score=32.08 Aligned_cols=101 Identities=13% Similarity=0.185 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHcCCCCceeEEEEec--------CC-CCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCC-CcCc
Q 005135 294 TQILRVVKKLEVAEMLDCFQLLHFHI--------GS-QIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGL-GIDY 363 (712)
Q Consensus 294 ~e~~~~l~~l~~~~~L~~l~GLHfHi--------GS-qi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGl-gv~Y 363 (712)
..+.++.+.+++.|+ . +..+|... |. ...+.+..+++++.+.+.++...++|.+ +|-+-+|. |..|
T Consensus 69 ~~~~~l~~~l~~~GL-~-i~~~~~~~f~~p~~~~g~l~~~d~~~r~~~i~~~~~~i~~A~~LGa~--~vvv~~G~~g~~~ 144 (394)
T 1xla_A 69 KILGDFNQALKDTGL-K-VPMVTTNLFSHPVFKDGGFTSNDRSIRRFALAKVLHNIDLAAEMGAE--TFVMWGGREGSEY 144 (394)
T ss_dssp HHHHHHHHHHHHHCC-B-CCEEECCCSSSGGGTTCSTTCSSHHHHHHHHHHHHHHHHHHHHTTCS--EEEECCTTCEESS
T ss_pred HHHHHHHHHHHHcCC-e-EEEEecCccCCccccCCccCCCCHHHHHHHHHHHHHHHHHHHHhCCC--EEEECCCCCcccc
Confidence 345666667777775 5 66776522 11 1234555677788888888777788865 55565553 2222
Q ss_pred CCCCCCCCCCCcCCCHHHHHHHHHHHHHHHH---HhcCCCCCeEEecCc
Q 005135 364 DGSKSADSDLSVAYTLEEYASAVVQAIRYVC---DRKNVKHPVLCSESG 409 (712)
Q Consensus 364 ~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~---~~~gv~~p~Li~EPG 409 (712)
.. ..+.++..+.+++.+++++ .+.|. ..+|.+|+=
T Consensus 145 ~~----------~~~~~~~~~~~~e~L~~l~~~A~~~G~-~v~l~lE~~ 182 (394)
T 1xla_A 145 DG----------SKDLAAALDRMREGVDTAAGYIKDKGY-NLRIALEPK 182 (394)
T ss_dssp GG----------GCCHHHHHHHHHHHHHHHHHHHHHHTC-CCEEEECCC
T ss_pred cc----------ccCHHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEecC
Confidence 11 1234444455555555554 45671 128999973
No 62
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=50.87 E-value=1.1e+02 Score=30.59 Aligned_cols=103 Identities=15% Similarity=0.138 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCCceeEEEEec--CCC--CCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCC
Q 005135 290 GLTTTQILRVVKKLEVAEMLDCFQLLHFHI--GSQ--IPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDG 365 (712)
Q Consensus 290 Gl~~~e~~~~l~~l~~~~~L~~l~GLHfHi--GSq--i~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~ 365 (712)
.++.+++.++.+.+++.|+ . +..+|+.. +-. ..+.+...+.++.+.+.++.+.++|.+ +|-+.|+- ..+..
T Consensus 62 ~~~~~~~~~~~~~l~~~gl-~-i~~~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~A~~lG~~--~v~~~~~~-~~~~~ 136 (295)
T 3cqj_A 62 DWSREQRLALVNAIVETGV-R-VPSMCLSAHRRFPLGSEDDAVRAQGLEIMRKAIQFAQDVGIR--VIQLAGYD-VYYQE 136 (295)
T ss_dssp GCCHHHHHHHHHHHHHHCC-E-EEEEEEGGGGTSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCC--EEEECCCS-CSSSC
T ss_pred cCCHHHHHHHHHHHHHcCC-e-EEEEecCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCC--EEEECCCC-CCcCc
Confidence 4567778888888888885 5 77777521 111 135666667777777777777778864 45555432 11111
Q ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCc
Q 005135 366 SKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESG 409 (712)
Q Consensus 366 s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPG 409 (712)
+ . .-.++.+++.+.. +.+.+.+.|+ +|.+|+-
T Consensus 137 ~-~-------~~~~~~~~~~l~~-l~~~a~~~Gv---~l~lEn~ 168 (295)
T 3cqj_A 137 A-N-------NETRRRFRDGLKE-SVEMASRAQV---TLAMEIM 168 (295)
T ss_dssp C-C-------HHHHHHHHHHHHH-HHHHHHHHTC---EEEEECC
T ss_pred C-H-------HHHHHHHHHHHHH-HHHHHHHhCC---EEEEeeC
Confidence 0 0 1123333333332 2334456776 8999985
No 63
>3m0m_A L-rhamnose isomerase; beta/alpha barrel, HOMO-tetramer, metal-binding protein, TIM isomerase; HET: AOS; 1.45A {Pseudomonas stutzeri} PDB: 3m0l_A* 3m0h_A* 3m0v_A* 3m0x_A* 3m0y_A* 3itx_A 2hcv_A* 2i57_A* 2i56_A 3ity_A 3iud_A 3iuh_A 3iui_A 3itv_A* 3itt_A* 3itl_A* 3ito_A* 4gji_A* 4gjj_A*
Probab=50.23 E-value=1.1e+02 Score=33.42 Aligned_cols=100 Identities=13% Similarity=0.114 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHcCCCCceeEEEE----ec---------CC-CCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCC
Q 005135 294 TQILRVVKKLEVAEMLDCFQLLHF----HI---------GS-QIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGL 359 (712)
Q Consensus 294 ~e~~~~l~~l~~~~~L~~l~GLHf----Hi---------GS-qi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGl 359 (712)
.++.++.+.+++.|+ . +.+++. |. |+ -.+|.+..+.+++.+.+.++...++|.+. +.+-+|=
T Consensus 107 ~d~~~lk~~l~e~GL-~-l~~i~~~~f~hp~~~~~~Y~~GnLtspD~~vR~~Ai~~lk~~Id~A~~LGa~~--lv~w~Gd 182 (438)
T 3m0m_A 107 ADPKELKARGDALGL-G-FDAMNSNTFSDAPGQAHSYKYGSLSHTNAATRAQAVEHNLECIEIGKAIGSKA--LTVWIGD 182 (438)
T ss_dssp CCHHHHHHHHHHHTC-E-EEEEECCCSSCCTTCSSCCTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCCE--EEECCCC
T ss_pred HHHHHHHHHHHHcCC-c-eEEeecccccCchhcccccccCCCCCcCHHHHHHHHHHHHHHHHHHHHcCCCE--EEEECCC
Confidence 456666677778775 4 555554 32 21 23467777888888888888777888664 5664443
Q ss_pred CcCcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecC
Q 005135 360 GIDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSES 408 (712)
Q Consensus 360 gv~Y~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EP 408 (712)
|..|.. +.+.++--+.+++.|+++++... +..+|.+||
T Consensus 183 G~~~~~----------~~d~~~a~~rl~esL~ei~~~A~-~gv~l~LE~ 220 (438)
T 3m0m_A 183 GSNFPG----------QSNFTRAFERYLSAMAEIYKGLP-DDWKLFSEH 220 (438)
T ss_dssp EESSTT----------TSCHHHHHHHHHHHHHHHHHTCC-TTCEEEEEC
T ss_pred ccCCCC----------cCCHHHHHHHHHHHHHHHHHhhh-cCCEEEEcc
Confidence 333322 13577777888888998887642 345888886
No 64
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=49.49 E-value=91 Score=30.43 Aligned_cols=96 Identities=18% Similarity=0.143 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCCCCCCCCC
Q 005135 294 TQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSADSDL 373 (712)
Q Consensus 294 ~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s~~~~~~~ 373 (712)
.++.++.+.+++.|+ . +..+|.+..-...+.+...+.++...+.++...++|.+.=.+-.| +++ . +
T Consensus 45 ~~~~~~~~~l~~~gl-~-~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~g-~~~--~-~-------- 110 (275)
T 3qc0_A 45 IGLGEAGRIVRANGL-K-LTGLCRGGFFPAPDASGREKAIDDNRRAVDEAAELGADCLVLVAG-GLP--G-G-------- 110 (275)
T ss_dssp HCHHHHHHHHHHHTC-E-ESCEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTTCSCEEEECB-CCC--T-T--------
T ss_pred cCHHHHHHHHHHcCC-c-eEEeecCCCcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEeeC-CCC--C-C--------
Confidence 345666677778875 5 777776432122466667777777777777777888754333322 221 1 1
Q ss_pred CcCCCHHHHHHHHHHHHHH---HHHhcCCCCCeEEecC
Q 005135 374 SVAYTLEEYASAVVQAIRY---VCDRKNVKHPVLCSES 408 (712)
Q Consensus 374 s~~ysleeya~~Iv~~l~~---~~~~~gv~~p~Li~EP 408 (712)
..+.++..+.+++.+++ .+++.|+ +|.+||
T Consensus 111 --~~~~~~~~~~~~~~l~~l~~~a~~~gv---~l~lE~ 143 (275)
T 3qc0_A 111 --SKNIDAARRMVVEGIAAVLPHARAAGV---PLAIEP 143 (275)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHHHTC---CEEECC
T ss_pred --CcCHHHHHHHHHHHHHHHHHHHHHcCC---EEEEeE
Confidence 12344444444444444 4456777 799998
No 65
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=48.44 E-value=89 Score=32.41 Aligned_cols=102 Identities=22% Similarity=0.220 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHc-CCCCceeEEEEecCCCC
Q 005135 245 QEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVA-EMLDCFQLLHFHIGSQI 323 (712)
Q Consensus 245 s~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~-~~L~~l~GLHfHiGSqi 323 (712)
+++.+..+.+.+.+.|.. . |++. +|.| .+++.++.++++.+++. +.+ ..++|+|-..+.
T Consensus 155 ~~~~~~~~~~~~~~~Ga~-~--i~l~----------DT~G-----~~~P~~v~~lv~~l~~~~~~~--~l~~H~Hnd~Gl 214 (307)
T 1ydo_A 155 PIEQVIRLSEALFEFGIS-E--LSLG----------DTIG-----AANPAQVETVLEALLARFPAN--QIALHFHDTRGT 214 (307)
T ss_dssp CHHHHHHHHHHHHHHTCS-C--EEEE----------CSSC-----CCCHHHHHHHHHHHHTTSCGG--GEEEECBGGGSC
T ss_pred CHHHHHHHHHHHHhcCCC-E--EEEc----------CCCC-----CcCHHHHHHHHHHHHHhCCCC--eEEEEECCCCch
Confidence 466777777766676654 1 3332 2332 36789999999999864 333 469999987653
Q ss_pred CChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEc-CCCCc-CcCCCCCCCCCCCcCCCHHHHHHHH
Q 005135 324 PSTALLTDGVGEAAQIYCELVRLGANMQVIDIG-GGLGI-DYDGSKSADSDLSVAYTLEEYASAV 386 (712)
Q Consensus 324 ~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIG-GGlgv-~Y~~s~~~~~~~s~~ysleeya~~I 386 (712)
. +..+..- .+.|+ +.||.- +|+|- ||...+. -|.++|+++..+
T Consensus 215 a--------~AN~laA----v~aGa--~~vd~tv~GlGecp~a~gra------GN~~~E~lv~~L 259 (307)
T 1ydo_A 215 A--------LANMVTA----LQMGI--TVFDGSAGGLGGCPYAPGSS------GNAATEDIVYML 259 (307)
T ss_dssp H--------HHHHHHH----HHHTC--CEEEEBGGGCCEETTEEEEE------CBCBHHHHHHHH
T ss_pred H--------HHHHHHH----HHhCC--CEEEEcccccCCCCCCCCCC------CChhHHHHHHHH
Confidence 1 2221111 12354 566642 35653 4432222 167888776544
No 66
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=48.12 E-value=80 Score=31.36 Aligned_cols=100 Identities=14% Similarity=0.098 Sum_probs=58.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCceeEEEEecCCC-------------CCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcC
Q 005135 291 LTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQ-------------IPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGG 357 (712)
Q Consensus 291 l~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSq-------------i~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGG 357 (712)
++.+++.++.+.+++.|+ . +..+++|...+ ..+.+...+.++.+.+.++.+.++|. ++|-+..
T Consensus 48 ~~~~~~~~~~~~l~~~gl-~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~--~~v~~~~ 123 (290)
T 3tva_A 48 RTREHAQAFRAKCDAAGI-Q-VTVIFGGFDGESYADIPTTARTVGLVPLETRASRVAEMKEISDFASWVGC--PAIGLHI 123 (290)
T ss_dssp CSHHHHHHHHHHHHHTTC-E-EEEEECCCTTCCCSSHHHHHHHSSSCSTTTHHHHHHHHHHHHHHHHHHTC--SEEEECC
T ss_pred CCHHHHHHHHHHHHHcCC-E-EEEEeeccCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCC--CEEEEcC
Confidence 556778888888888885 5 77777653111 12444455666666666666667775 4566654
Q ss_pred CCCcCcCCCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCc
Q 005135 358 GLGIDYDGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESG 409 (712)
Q Consensus 358 Glgv~Y~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPG 409 (712)
|+- + .. . ...++.+++.+.. +.+.+++.|+ +|.+|+-
T Consensus 124 G~~-~--~~-~-------~~~~~~~~~~l~~-l~~~a~~~Gv---~l~lE~~ 160 (290)
T 3tva_A 124 GFV-P--ES-S-------SPDYSELVRVTQD-LLTHAANHGQ---AVHLETG 160 (290)
T ss_dssp CCC-C--CT-T-------SHHHHHHHHHHHH-HHHHHHTTTC---EEEEECC
T ss_pred CCC-c--cc-c-------hHHHHHHHHHHHH-HHHHHHHcCC---EEEEecC
Confidence 431 1 10 1 1235555554433 3345556776 8999984
No 67
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=47.08 E-value=45 Score=35.45 Aligned_cols=48 Identities=17% Similarity=0.232 Sum_probs=33.8
Q ss_pred hcCCCceEEEEEeeCCCCCCCccccCCCCCCCC-CCHHHHHHHHHHHHHcCCCCceeEEEEecCC
Q 005135 258 KLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFG-LTTTQILRVVKKLEVAEMLDCFQLLHFHIGS 321 (712)
Q Consensus 258 ~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFG-l~~~e~~~~l~~l~~~~~L~~l~GLHfHiGS 321 (712)
..+....|++|+++.. |. .-| .+.++..++++.+.+.| ++ .||+|.|.
T Consensus 221 avg~d~pV~vRis~~~-----~~-------~~G~~~~~~~~~la~~L~~~G-vd---~i~vs~g~ 269 (363)
T 3l5l_A 221 VWPENLPLTARFGVLE-----YD-------GRDEQTLEESIELARRFKAGG-LD---LLSVSVGF 269 (363)
T ss_dssp TSCTTSCEEEEEEEEC-----SS-------SCHHHHHHHHHHHHHHHHHTT-CC---EEEEEECC
T ss_pred HcCCCceEEEEecchh-----cC-------CCCCCCHHHHHHHHHHHHHcC-CC---EEEEecCc
Confidence 3454567999999742 11 115 67788999999999887 34 68988764
No 68
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=46.61 E-value=1.3e+02 Score=29.13 Aligned_cols=94 Identities=15% Similarity=0.195 Sum_probs=51.8
Q ss_pred HHHHHHHHHcCCCCceeEEEEecCC-------CCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCCCCC
Q 005135 297 LRVVKKLEVAEMLDCFQLLHFHIGS-------QIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSA 369 (712)
Q Consensus 297 ~~~l~~l~~~~~L~~l~GLHfHiGS-------qi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s~~~ 369 (712)
.++.+.+++.|+ . +..+|...+. -..+.+...+.++...+.++.+.++|. ++|.+..|.. + .
T Consensus 43 ~~~~~~l~~~gl-~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~--~~v~~~~g~~-~-~----- 111 (260)
T 1k77_A 43 LQIQKQLEQNHL-T-LALFNTAPGDINAGEWGLSALPGREHEAHADIDLALEYALALNC--EQVHVMAGVV-P-A----- 111 (260)
T ss_dssp HHHHHHHHHTTC-E-EEEEECCCCCGGGTCSCSTTCTTCHHHHHHHHHHHHHHHHHTTC--SEEECCCCBC-C-T-----
T ss_pred HHHHHHHHHcCC-c-eEEEecCCcccccccCCCCCChhHHHHHHHHHHHHHHHHHHcCC--CEEEECcCCC-C-C-----
Confidence 344555667775 5 7778865421 122444445666666666666677775 4566644431 0 0
Q ss_pred CCCCCcCCCHHHHHHHHHHHHHHH---HHhcCCCCCeEEecCcc
Q 005135 370 DSDLSVAYTLEEYASAVVQAIRYV---CDRKNVKHPVLCSESGR 410 (712)
Q Consensus 370 ~~~~s~~ysleeya~~Iv~~l~~~---~~~~gv~~p~Li~EPGR 410 (712)
..+.++..+.+++.++++ +++.|+ +|.+|+-.
T Consensus 112 ------~~~~~~~~~~~~~~l~~l~~~a~~~gv---~l~~E~~~ 146 (260)
T 1k77_A 112 ------GEDAERYRAVFIDNIRYAADRFAPHGK---RILVEALS 146 (260)
T ss_dssp ------TSCHHHHHHHHHHHHHHHHHHHGGGTC---EEEECCCC
T ss_pred ------CCCHHHHHHHHHHHHHHHHHHHHHcCC---EEEEEeCC
Confidence 123444444455555444 445666 89999853
No 69
>3tc3_A UV damage endonuclease; TIM-barrel, hydrolase; 1.50A {Sulfolobus acidocaldarius}
Probab=46.24 E-value=2.1e+02 Score=29.84 Aligned_cols=103 Identities=13% Similarity=0.089 Sum_probs=63.2
Q ss_pred ECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCH-HHH----HHHHHHHHHcCCCCceeEEEE
Q 005135 243 LEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTT-TQI----LRVVKKLEVAEMLDCFQLLHF 317 (712)
Q Consensus 243 VDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~-~e~----~~~l~~l~~~~~L~~l~GLHf 317 (712)
..|+..|.++++...+.|++ ..|+....-+ |. | ...+|.+. +++ .++=+.+++.++ -|.|
T Consensus 56 ~~Nl~~l~~il~~n~~~~I~---~yRiSS~l~P---~~-t---hp~~~~~~~~~~~~~l~~iG~~a~~~~i-----RLS~ 120 (310)
T 3tc3_A 56 SSNLLCLKNILEWNLKHEIL---FFRISSNTIP---LA-S---HPKFHVNWKDKLSHILGDIGDFIKENSI-----RISM 120 (310)
T ss_dssp HHHHHHHHHHHHHHHHTTCC---EEECCTTSST---TT-T---STTCCCCHHHHTHHHHHHHHHHHHHTTC-----EEEE
T ss_pred HHHHHHHHHHHHHHHHcCCE---EEEeCcccCC---Cc-c---ccccccchHHHHHHHHHHHHHHHHHcCc-----EEEe
Confidence 46788899999988887764 4677543211 11 1 12345554 222 333334556553 4899
Q ss_pred ecCCC----CCChHHHHHHHHHHHHHHHHHHHcCCCC-cEEEEcCCCC
Q 005135 318 HIGSQ----IPSTALLTDGVGEAAQIYCELVRLGANM-QVIDIGGGLG 360 (712)
Q Consensus 318 HiGSq----i~d~~~~~~ai~~~~~~~~~L~~~G~~l-~~IDIGGGlg 360 (712)
|.|-. .++.+.+.++++++..-..-+..+|.+- =.|-+||.+|
T Consensus 121 HPgqF~vL~S~~~~Vv~~SI~dL~yHa~~ld~mG~~~~i~IH~Gg~yG 168 (310)
T 3tc3_A 121 HPGQYVVLNSVREEVVRSSIMELKYHADLLDSMGIEGKIQIHVGSSMN 168 (310)
T ss_dssp CCCTTCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCCCTT
T ss_pred cCCCCccCCCCCHHHHHHHHHHHHHHHHHHHhcCCCcCceeecCCcCC
Confidence 99853 3467888889988876666666778742 2456777665
No 70
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*
Probab=46.18 E-value=80 Score=33.06 Aligned_cols=66 Identities=14% Similarity=0.170 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCceeEEEE-----ecCCCCC------ChHHHHHH-HHHHHHHHHHHHHcCCCCcEEEEcC
Q 005135 291 LTTTQILRVVKKLEVAEMLDCFQLLHF-----HIGSQIP------STALLTDG-VGEAAQIYCELVRLGANMQVIDIGG 357 (712)
Q Consensus 291 l~~~e~~~~l~~l~~~~~L~~l~GLHf-----HiGSqi~------d~~~~~~a-i~~~~~~~~~L~~~G~~l~~IDIGG 357 (712)
.+.+.+.+++++++++|+ +.+..||. ..|+|.. +.+.+.+. .....+++..+++.|..+.++-||=
T Consensus 57 ~~~~~~~~~~~~A~~~Gl-kV~ld~Hysd~WadPg~Q~~p~~W~~~~~~~~~~~~~yt~~vl~~l~~~g~~~~~v~vGN 134 (332)
T 1hjs_A 57 YNLDYNIAIAKRAKAAGL-GVYIDFHYSDTWADPAHQTMPAGWPSDIDNLSWKLYNYTLDAANKLQNAGIQPTIVSIGN 134 (332)
T ss_dssp TSHHHHHHHHHHHHHTTC-EEEEEECCSSSCCBTTBCBCCTTCCCSHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEESS
T ss_pred CCHHHHHHHHHHHHHCCC-EEEEEeccCCCcCCccccCCccccccchHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEee
Confidence 457889999999999997 42444443 1455532 22333333 3445566777778888889888874
No 71
>1muw_A Xylose isomerase; atomic resolution, disorder; 0.86A {Streptomyces olivochromogenes} SCOP: c.1.15.3 PDB: 1s5m_A* 1s5n_A* 2gyi_A* 1xyb_A* 1xyc_A* 1xya_A* 1xyl_A 1xym_A* 1dxi_A 3gnx_A* 1gw9_A* 1xib_A 1xic_A* 1xid_A* 1xie_A* 1xif_A* 1xig_A* 1xih_A* 1xii_A* 1xij_A ...
Probab=45.89 E-value=1.1e+02 Score=32.17 Aligned_cols=101 Identities=15% Similarity=0.155 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHcCCCCceeEEEEec--------CC-CCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCC-CcCc
Q 005135 294 TQILRVVKKLEVAEMLDCFQLLHFHI--------GS-QIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGL-GIDY 363 (712)
Q Consensus 294 ~e~~~~l~~l~~~~~L~~l~GLHfHi--------GS-qi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGl-gv~Y 363 (712)
.++.++.+.+++.|+ . +..+|... |. ...+.+..+++++.+.+.++...++|.+ +|-+.+|. +.+|
T Consensus 69 ~~~~~l~~~l~~~GL-~-i~~~~~~~~~~p~~~~g~l~~~d~~~r~~~i~~~~~~i~~A~~LGa~--~vvv~~g~~~~~~ 144 (386)
T 1muw_A 69 SHIKRFRQALDATGM-T-VPMATTNLFTHPVFKDGGFTANDRDVRRYALRKTIRNIDLAVELGAK--TYVAWGGREGAES 144 (386)
T ss_dssp HHHHHHHHHHHHHTC-B-CCEEECCCSSSGGGTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCS--EEEECCTTCEESS
T ss_pred HHHHHHHHHHHHhCC-e-EEEEecccccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC--EEEECCCCCcccc
Confidence 456666667777775 5 66777522 11 1234555667777777777777778865 56676664 2222
Q ss_pred CCCCCCCCCCCcCCCHHHHHHHHHHHHHHHH---HhcCCCCCeEEecCc
Q 005135 364 DGSKSADSDLSVAYTLEEYASAVVQAIRYVC---DRKNVKHPVLCSESG 409 (712)
Q Consensus 364 ~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~---~~~gv~~p~Li~EPG 409 (712)
.. ..+.++..+.+++.+++++ .+.|. ..+|.+|+=
T Consensus 145 ~~----------~~~~~~~~~~~~e~L~~l~~~A~~~G~-~v~l~lE~~ 182 (386)
T 1muw_A 145 GA----------AKDVRVALDRMKEAFDLLGEYVTSQGY-DIRFAIEPK 182 (386)
T ss_dssp TT----------SCCHHHHHHHHHHHHHHHHHHHHHHTC-CCEEEECCC
T ss_pred cc----------cCCHHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEeeC
Confidence 21 1234444445555555544 45561 128999974
No 72
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
Probab=45.05 E-value=2.7e+02 Score=31.26 Aligned_cols=104 Identities=11% Similarity=0.044 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHH-hccCCCcEEEEE----C---CHHHHHHHHHHHHhcCCCceEEE
Q 005135 196 KPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALL-ARKLDLNVVIVL----E---QEEEVDLVIEISKKLNVRPVIGA 267 (712)
Q Consensus 196 ~~EL~~Al~~G~~~~p~~II~~ng~K~~e~I~~Al~-~~~~G~~v~IvV----D---s~~EL~~I~~~a~~~g~~~~IgL 267 (712)
...++.+.++|. +.+-+.....+.+.++.+++ +++.|..+...+ . +++.+..+.+.+.+.|.. .|
T Consensus 120 ~~~ve~a~~aGv----d~vrIf~s~sd~~ni~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~Gad---~I 192 (539)
T 1rqb_A 120 DRFVDKSAENGM----DVFRVFDAMNDPRNMAHAMAAVKKAGKHAQGTICYTISPVHTVEGYVKLAGQLLDMGAD---SI 192 (539)
T ss_dssp HHHHHHHHHTTC----CEEEECCTTCCTHHHHHHHHHHHHTTCEEEEEEECCCSTTCCHHHHHHHHHHHHHTTCS---EE
T ss_pred HHHHHHHHhCCC----CEEEEEEehhHHHHHHHHHHHHHHCCCeEEEEEEeeeCCCCCHHHHHHHHHHHHHcCCC---EE
Confidence 445667777763 33433334333344544444 344666553344 1 445555555555566643 13
Q ss_pred EEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHc-C-CCCceeEEEEecCCCC
Q 005135 268 RAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVA-E-MLDCFQLLHFHIGSQI 323 (712)
Q Consensus 268 RVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~-~-~L~~l~GLHfHiGSqi 323 (712)
++. +|.| .+++.++.++++.+++. + .+ ..++|+|--.+.
T Consensus 193 ~L~----------DT~G-----~~~P~~v~~lv~~l~~~~p~~i--~I~~H~Hnd~Gl 233 (539)
T 1rqb_A 193 ALK----------DMAA-----LLKPQPAYDIIKAIKDTYGQKT--QINLHCHSTTGV 233 (539)
T ss_dssp EEE----------ETTC-----CCCHHHHHHHHHHHHHHHCTTC--CEEEEEBCTTSC
T ss_pred EeC----------CCCC-----CcCHHHHHHHHHHHHHhcCCCc--eEEEEeCCCCCh
Confidence 332 2333 46788999999988764 3 44 469999987763
No 73
>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A
Probab=45.01 E-value=1.3e+02 Score=31.32 Aligned_cols=91 Identities=13% Similarity=0.217 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHHcCCCCceeEEEEec-------CCCC-------CChHHHHHHHHH-HHHHHHHHHHcCCCCcEEEEc
Q 005135 292 TTTQILRVVKKLEVAEMLDCFQLLHFHI-------GSQI-------PSTALLTDGVGE-AAQIYCELVRLGANMQVIDIG 356 (712)
Q Consensus 292 ~~~e~~~~l~~l~~~~~L~~l~GLHfHi-------GSqi-------~d~~~~~~ai~~-~~~~~~~L~~~G~~l~~IDIG 356 (712)
+.+.+.++++++++.|+ +-+ |-||. +.|. .+.+.+.+.+.+ +..++..+++.|..+.++-+|
T Consensus 58 d~~~~~~~~~~ak~~Gl-~v~--ld~hysd~wadP~~q~~p~~W~~~~~~~~~~~~~~yt~~v~~~l~~~g~~v~~v~vG 134 (334)
T 1fob_A 58 DLDYNLELAKRVKAAGM-SLY--LDLHLSDTWADPSDQTTPSGWSTTDLGTLKWQLYNYTLEVCNTFAENDIDIEIISIG 134 (334)
T ss_dssp CHHHHHHHHHHHHHTTC-EEE--EEECCSSSCCBTTBCBCCTTSCSSCHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEES
T ss_pred CHHHHHHHHHHHHHCCC-EEE--EEeccCCCCCCcccccCccccccCChHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEe
Confidence 47889999999999997 424 44554 2221 134445555544 556667777788888999888
Q ss_pred CCCCcC--cCCCCCCCCCCCcCCCHHHHHHHHHHHHHHH
Q 005135 357 GGLGID--YDGSKSADSDLSVAYTLEEYASAVVQAIRYV 393 (712)
Q Consensus 357 GGlgv~--Y~~s~~~~~~~s~~ysleeya~~Iv~~l~~~ 393 (712)
==.-.. ....+. -..+.+++.+..+.+.+
T Consensus 135 NE~~~G~lwp~g~~--------~~~~~l~~~~~~a~~av 165 (334)
T 1fob_A 135 NEIRAGLLWPLGET--------SSYSNIGALLHSGAWGV 165 (334)
T ss_dssp SSGGGCSSBTTTST--------TCHHHHHHHHHHHHHHH
T ss_pred ecCcccccCCCCcc--------hhHHHHHHHHHHHHHHH
Confidence 421110 111111 14677777777666654
No 74
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=44.43 E-value=1.3e+02 Score=29.45 Aligned_cols=92 Identities=10% Similarity=0.120 Sum_probs=50.5
Q ss_pred HHHHHHHHHHcCCCCceeEEEEecCCC-------CCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCCCC
Q 005135 296 ILRVVKKLEVAEMLDCFQLLHFHIGSQ-------IPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKS 368 (712)
Q Consensus 296 ~~~~l~~l~~~~~L~~l~GLHfHiGSq-------i~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s~~ 368 (712)
+.++.+.+++.|+ . +..+|+..+.- ..+.+...+.++...+.++...++|. ++|-+..| .+.
T Consensus 50 ~~~~~~~l~~~gl-~-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~A~~lGa--~~v~~~~g--~~~----- 118 (269)
T 3ngf_A 50 ADVIARELKQHNL-T-QVLFNMPPGDWAAGERGMAAISGREQEFRDNVDIALHYALALDC--RTLHAMSG--ITE----- 118 (269)
T ss_dssp HHHHHHHHHHTTC-E-EEEEECCCSCTTTTCCBCTTCTTCHHHHHHHHHHHHHHHHHTTC--CEEECCBC--BCT-----
T ss_pred HHHHHHHHHHcCC-c-EEEEecCCCccccCCCCcCCCccHHHHHHHHHHHHHHHHHHcCC--CEEEEccC--CCC-----
Confidence 4455556667775 5 77777643310 12344445566666666666666775 45666555 221
Q ss_pred CCCCCCcCCCHHHHHHHHHHHHHHH---HHhcCCCCCeEEecC
Q 005135 369 ADSDLSVAYTLEEYASAVVQAIRYV---CDRKNVKHPVLCSES 408 (712)
Q Consensus 369 ~~~~~s~~ysleeya~~Iv~~l~~~---~~~~gv~~p~Li~EP 408 (712)
..+.++..+.+++.++++ +.+.|+ +|.+||
T Consensus 119 -------~~~~~~~~~~~~~~l~~l~~~a~~~Gv---~l~lE~ 151 (269)
T 3ngf_A 119 -------GLDRKACEETFIENFRYAADKLAPHGI---TVLVEP 151 (269)
T ss_dssp -------TSCHHHHHHHHHHHHHHHHHHHGGGTC---EEEECC
T ss_pred -------CCCHHHHHHHHHHHHHHHHHHHHHcCC---EEEEee
Confidence 123444444445544444 445676 899997
No 75
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=44.16 E-value=87 Score=30.96 Aligned_cols=97 Identities=13% Similarity=0.079 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCCCCCCCC
Q 005135 293 TTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSADSD 372 (712)
Q Consensus 293 ~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s~~~~~~ 372 (712)
..++.++.+.+++.|+ . +..++.|.+. .......+.++.+.+.++.+.++|. ++|.+..|..-.-. .+
T Consensus 47 ~~~~~~~~~~l~~~gl-~-~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~A~~lG~--~~v~~~~g~~~~~~--~~---- 114 (286)
T 3dx5_A 47 YETTERELNCLKDKTL-E-ITMISDYLDI--SLSADFEKTIEKCEQLAILANWFKT--NKIRTFAGQKGSAD--FS---- 114 (286)
T ss_dssp HHHHHHHHHHTGGGTC-C-EEEEECCCCC--STTSCHHHHHHHHHHHHHHHHHHTC--CEEEECSCSSCGGG--SC----
T ss_pred HHHHHHHHHHHHHcCC-e-EEEEecCCCC--CCchhHHHHHHHHHHHHHHHHHhCC--CEEEEcCCCCCccc--Cc----
Confidence 4566677777778875 5 7777666542 2222234455555555555566675 46666555421100 00
Q ss_pred CCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecC
Q 005135 373 LSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSES 408 (712)
Q Consensus 373 ~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EP 408 (712)
.-.++.+++.+.. +.+.+.+.|+ +|.+|+
T Consensus 115 ---~~~~~~~~~~l~~-l~~~a~~~Gv---~l~lE~ 143 (286)
T 3dx5_A 115 ---QQERQEYVNRIRM-ICELFAQHNM---YVLLET 143 (286)
T ss_dssp ---HHHHHHHHHHHHH-HHHHHHHTTC---EEEEEC
T ss_pred ---HHHHHHHHHHHHH-HHHHHHHhCC---EEEEec
Confidence 0123333333322 3334456776 899997
No 76
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=43.57 E-value=1e+02 Score=32.46 Aligned_cols=44 Identities=18% Similarity=0.262 Sum_probs=32.8
Q ss_pred CceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCC
Q 005135 262 RPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGS 321 (712)
Q Consensus 262 ~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGS 321 (712)
...|++|+++.. |. .=|.+.++..++++.+.+.|. + .||+|.|.
T Consensus 209 ~~pv~vRls~~~-----~~-------~~g~~~~~~~~la~~L~~~Gv-d---~i~vs~g~ 252 (340)
T 3gr7_A 209 DGPLFVRISASD-----YH-------PDGLTAKDYVPYAKRMKEQGV-D---LVDVSSGA 252 (340)
T ss_dssp CSCEEEEEESCC-----CS-------TTSCCGGGHHHHHHHHHHTTC-C---EEEEECCC
T ss_pred CCceEEEecccc-----cc-------CCCCCHHHHHHHHHHHHHcCC-C---EEEEecCC
Confidence 567999998742 11 116788999999999999873 4 69998764
No 77
>1xim_A D-xylose isomerase; isomerase(intramolecular oxidoreductse); HET: XYL; 2.20A {Actinoplanes missouriensis} SCOP: c.1.15.3 PDB: 4xim_A 5xim_A* 6xim_A* 7xim_A 8xim_A* 9xim_A* 3xin_A 2xim_A* 5xin_A* 1xin_A* 1bhw_A* 2xin_A* 3xim_A*
Probab=42.89 E-value=1.2e+02 Score=32.05 Aligned_cols=99 Identities=15% Similarity=0.212 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHcCCCCceeEEEEec--------CC-CCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCC-CCcCc
Q 005135 294 TQILRVVKKLEVAEMLDCFQLLHFHI--------GS-QIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGG-LGIDY 363 (712)
Q Consensus 294 ~e~~~~l~~l~~~~~L~~l~GLHfHi--------GS-qi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGG-lgv~Y 363 (712)
.++.++.+.+++.|+ . +..+|... |+ ...+.+..+.+++.+.+.++...++|.+ .|.+-+| .|.+|
T Consensus 69 ~~~~~l~~~l~~~GL-~-i~~~~~~~f~~p~~~~g~l~spd~~~r~~~i~~~~~~i~~A~~LGa~--~vv~~~G~~g~~~ 144 (393)
T 1xim_A 69 GIIAGFKKALDETGL-I-VPMVTTNLFTHPVFKDGGFTSNDRSVRRYAIRKVLRQMDLGAELGAK--TLVLWGGREGAEY 144 (393)
T ss_dssp HHHHHHHHHHHHHTC-B-CCEEECCCSSSGGGTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCC--EEEEECTTSEESS
T ss_pred HHHHHHHHHHHHhCC-E-EEEEecCCcCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC--EEEECCCCCCCcC
Confidence 466667777788875 5 66777533 11 1235555667777777777777777864 4555433 23333
Q ss_pred CCCCCCCCCCCcCCCHHHHHHHHHHHHHHHH---Hhc--CCCCCeEEecCc
Q 005135 364 DGSKSADSDLSVAYTLEEYASAVVQAIRYVC---DRK--NVKHPVLCSESG 409 (712)
Q Consensus 364 ~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~---~~~--gv~~p~Li~EPG 409 (712)
.. +.+.++..+.+++.+++++ .+. |+ +|.+||=
T Consensus 145 ~~----------~~~~~~~~~~~~e~L~~l~~~A~~~g~gv---~l~lE~~ 182 (393)
T 1xim_A 145 DS----------AKDVSAALDRYREALNLLAQYSEDRGYGL---RFAIEPK 182 (393)
T ss_dssp GG----------GCCHHHHHHHHHHHHHHHHHHHHHHTCCC---EEEEECC
T ss_pred Cc----------cCCHHHHHHHHHHHHHHHHHHHHhcCCCc---EEEEecC
Confidence 21 1234444444555555544 344 55 8888873
No 78
>1bxb_A Xylose isomerase; xylose metabolism; 2.20A {Thermus thermophilus} SCOP: c.1.15.3 PDB: 1bxc_A
Probab=41.21 E-value=2.2e+02 Score=29.99 Aligned_cols=102 Identities=11% Similarity=0.093 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHcCCCCceeEEEEecC--------C-CCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCC-CcCc
Q 005135 294 TQILRVVKKLEVAEMLDCFQLLHFHIG--------S-QIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGL-GIDY 363 (712)
Q Consensus 294 ~e~~~~l~~l~~~~~L~~l~GLHfHiG--------S-qi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGl-gv~Y 363 (712)
.++.++.+.+++.|+ . +..+|.... + ...+.+..+++++.+.+.++...++|.+ +|.+.+|. |.+|
T Consensus 69 ~~~~~l~~~l~~~GL-~-i~~~~~~~~~~p~~~~g~l~~~d~~~r~~~i~~~~~~i~~A~~LGa~--~vv~~~G~~g~~~ 144 (387)
T 1bxb_A 69 QIVRRFKKALDETGL-K-VPMVTANLFSDPAFKDGAFTSPDPWVRAYALRKSLETMDLGAELGAE--IYVVWPGREGAEV 144 (387)
T ss_dssp HHHHHHHHHHHHHTC-B-CCEEECCCSSSGGGGGCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCC--EEEECCTTCEESC
T ss_pred HHHHHHHHHHHHhCC-E-EEEEecCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC--EEEECCCCCCccC
Confidence 566667777788885 5 667775332 1 1234555667777777777766777854 56676663 2222
Q ss_pred CCCCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhc--CCCCCeEEecCc
Q 005135 364 DGSKSADSDLSVAYTLEEYASAVVQAIRYVCDRK--NVKHPVLCSESG 409 (712)
Q Consensus 364 ~~s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~--gv~~p~Li~EPG 409 (712)
..... ..-.++.+++.+.... +++.+. |+ +|.+||-
T Consensus 145 ~~~~~------~~~~~~~~~e~L~~l~-~~a~~~g~gv---~l~lE~~ 182 (387)
T 1bxb_A 145 EATGK------ARKVWDWVREALNFMA-AYAEDQGYGY---RFALEPK 182 (387)
T ss_dssp GGGCG------GGTHHHHHHHHHHHHH-HHHHHHTCCC---EEEECCC
T ss_pred CccCC------HHHHHHHHHHHHHHHH-HHHHHhCCCc---EEEEecC
Confidence 21100 1123455555544433 344555 55 8999984
No 79
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=40.01 E-value=3.4e+02 Score=28.23 Aligned_cols=133 Identities=16% Similarity=0.060 Sum_probs=77.2
Q ss_pred cHHHHHHHHHcCCCCccceEec-----------------CHHHHHHHHHhcCCCCCCcEEEe-CC-CCCHHHHHHHHHhc
Q 005135 173 DRFVVEDIVKFGSQFRFGLEAG-----------------SKPELLLAMSCLCKGSPEALLVC-NG-FKDAGYITLALLAR 233 (712)
Q Consensus 173 ~~~Vl~~l~~~G~~~~~GlEva-----------------S~~EL~~Al~~G~~~~p~~II~~-ng-~K~~e~I~~Al~~~ 233 (712)
...+++.|.+.|.. -+|++ +..|....+... .+.-.+..- .+ ....++++.|+++
T Consensus 32 k~~i~~~L~~~Gvd---~IEvG~~~g~p~ssp~~g~~~~~~~e~l~~i~~~--~~~~~i~~l~~p~~~~~~~i~~a~~a- 105 (345)
T 1nvm_A 32 VRAIARALDKAKVD---SIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGE--ISHAQIATLLLPGIGSVHDLKNAYQA- 105 (345)
T ss_dssp HHHHHHHHHHHTCS---EEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTT--CSSSEEEEEECBTTBCHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCCC---EEEEecCCCCCCCCCcccCCCCCHHHHHHHHHhh--CCCCEEEEEecCCcccHHHHHHHHhC-
Confidence 34677777777762 45663 456665444432 222344322 33 3457899999886
Q ss_pred cCCCcEEEEECCH---HHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCC
Q 005135 234 KLDLNVVIVLEQE---EEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLD 310 (712)
Q Consensus 234 ~~G~~v~IvVDs~---~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~ 310 (712)
|+..+.+..+. +++..+.+.+++.|.. ++..+.. . +..+++.+.++++.+.+.|. +
T Consensus 106 --Gvd~v~I~~~~s~~~~~~~~i~~ak~~G~~----v~~~~~~---------a-----~~~~~e~~~~ia~~~~~~Ga-~ 164 (345)
T 1nvm_A 106 --GARVVRVATHCTEADVSKQHIEYARNLGMD----TVGFLMM---------S-----HMIPAEKLAEQGKLMESYGA-T 164 (345)
T ss_dssp --TCCEEEEEEETTCGGGGHHHHHHHHHHTCE----EEEEEES---------T-----TSSCHHHHHHHHHHHHHHTC-S
T ss_pred --CcCEEEEEEeccHHHHHHHHHHHHHHCCCE----EEEEEEe---------C-----CCCCHHHHHHHHHHHHHCCC-C
Confidence 45555555666 5777777888877654 3333311 1 24577889999999998874 5
Q ss_pred ceeEEEEecCCCCCChHHHHHHHHH
Q 005135 311 CFQLLHFHIGSQIPSTALLTDGVGE 335 (712)
Q Consensus 311 ~l~GLHfHiGSqi~d~~~~~~ai~~ 335 (712)
...|-=-.|. ..+..+.+.++.
T Consensus 165 -~i~l~DT~G~--~~P~~v~~lv~~ 186 (345)
T 1nvm_A 165 -CIYMADSGGA--MSMNDIRDRMRA 186 (345)
T ss_dssp -EEEEECTTCC--CCHHHHHHHHHH
T ss_pred -EEEECCCcCc--cCHHHHHHHHHH
Confidence 3333323444 456644444433
No 80
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=39.10 E-value=3.2e+02 Score=27.61 Aligned_cols=75 Identities=13% Similarity=0.022 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCC
Q 005135 245 QEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIP 324 (712)
Q Consensus 245 s~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~ 324 (712)
+++.+..+.+.+++.|+. ++..+....+ .+. -.-.+++++.++++.+.+.|. +.+ .|.--.|. .
T Consensus 118 ~~~~~~~~v~~a~~~G~~----V~~~l~~~~~-------~e~-~~~~~~~~~~~~~~~~~~~G~-d~i-~l~Dt~G~--~ 181 (295)
T 1ydn_A 118 SIERLSPVIGAAINDGLA----IRGYVSCVVE-------CPY-DGPVTPQAVASVTEQLFSLGC-HEV-SLGDTIGR--G 181 (295)
T ss_dssp HHHHHHHHHHHHHHTTCE----EEEEEECSSE-------ETT-TEECCHHHHHHHHHHHHHHTC-SEE-EEEETTSC--C
T ss_pred HHHHHHHHHHHHHHcCCe----EEEEEEEEec-------CCc-CCCCCHHHHHHHHHHHHhcCC-CEE-EecCCCCC--c
Confidence 566666777888887754 3333321100 000 012578899999999999885 533 34433443 5
Q ss_pred ChHHHHHHHHH
Q 005135 325 STALLTDGVGE 335 (712)
Q Consensus 325 d~~~~~~ai~~ 335 (712)
++..+.+.++.
T Consensus 182 ~P~~~~~lv~~ 192 (295)
T 1ydn_A 182 TPDTVAAMLDA 192 (295)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 67654444443
No 81
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=38.84 E-value=13 Score=29.32 Aligned_cols=25 Identities=8% Similarity=0.422 Sum_probs=22.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCC
Q 005135 286 KGKFGLTTTQILRVVKKLEVAEMLD 310 (712)
Q Consensus 286 ~SKFGl~~~e~~~~l~~l~~~~~L~ 310 (712)
.+|||++.+++..++++|++.|.++
T Consensus 32 a~kygV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 32 SKVYGVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCee
Confidence 4689999999999999999999865
No 82
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=37.79 E-value=1.8e+02 Score=28.74 Aligned_cols=102 Identities=8% Similarity=0.006 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHcCCCCceeEEEEecCCC--CCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCCCCCCC
Q 005135 294 TQILRVVKKLEVAEMLDCFQLLHFHIGSQ--IPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSADS 371 (712)
Q Consensus 294 ~e~~~~l~~l~~~~~L~~l~GLHfHiGSq--i~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s~~~~~ 371 (712)
.++.++.+.+++.|+ . +..+|...... ..+.+...+.++...+.++...++|.+ +|-+..|++. +.....
T Consensus 64 ~~~~~~~~~l~~~gl-~-v~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~a~~lGa~--~v~~~~g~~~-~~~~~p--- 135 (287)
T 3kws_A 64 GRVNEIKQALNGRNI-K-VSAICAGFKGFILSTDPAIRKECMDTMKEIIAAAGELGST--GVIIVPAFNG-QVPALP--- 135 (287)
T ss_dssp GGHHHHHHHHTTSSC-E-ECEEECCCCSCTTBSSHHHHHHHHHHHHHHHHHHHHTTCS--EEEECSCCTT-CCSBCC---
T ss_pred HHHHHHHHHHHHcCC-e-EEEEecCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCC--EEEEecCcCC-cCCCCC---
Confidence 356666666777775 5 66666532111 136666667777777777777777754 5667666643 211000
Q ss_pred CCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCc
Q 005135 372 DLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESG 409 (712)
Q Consensus 372 ~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPG 409 (712)
+..-.++.+++.+.. +.+.+++.|+ +|.+|+-
T Consensus 136 --~~~~~~~~~~~~l~~-l~~~a~~~Gv---~l~lE~~ 167 (287)
T 3kws_A 136 --HTMETRDFLCEQFNE-MGTFAAQHGT---SVIFEPL 167 (287)
T ss_dssp --SSHHHHHHHHHHHHH-HHHHHHHTTC---CEEECCC
T ss_pred --CHHHHHHHHHHHHHH-HHHHHHHcCC---EEEEEec
Confidence 001123333333322 3344556776 7999964
No 83
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=35.91 E-value=4.8e+02 Score=32.14 Aligned_cols=32 Identities=28% Similarity=0.104 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCC
Q 005135 290 GLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQI 323 (712)
Q Consensus 290 Gl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi 323 (712)
.+++.++.++++.+++.=.+ ..++|+|--++.
T Consensus 734 ~~~P~~~~~lv~~l~~~~~~--~i~~H~Hnd~Gl 765 (1165)
T 2qf7_A 734 LLKPAAAKVLFKALREATGL--PIHFHTHDTSGI 765 (1165)
T ss_dssp CCCHHHHHHHHHHHHHHCSS--CEEEEECBTTSC
T ss_pred CcCHHHHHHHHHHHHHhcCC--eEEEEECCCCCH
Confidence 35678888999988765333 469999987764
No 84
>3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043}
Probab=35.23 E-value=3.6e+02 Score=27.37 Aligned_cols=97 Identities=18% Similarity=0.127 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHcCCCCceeEEEEecC-------C-CCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCC-CcCcCC
Q 005135 295 QILRVVKKLEVAEMLDCFQLLHFHIG-------S-QIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGL-GIDYDG 365 (712)
Q Consensus 295 e~~~~l~~l~~~~~L~~l~GLHfHiG-------S-qi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGl-gv~Y~~ 365 (712)
++.++.+.+++.|+ . +..+|.+.. + ...+.+..+.+++.+.+.++...++|.+ +|.+-+|. |..|..
T Consensus 62 ~~~~l~~~l~~~Gl-~-i~~~~~~~~~~~~~~g~l~~~d~~~r~~~i~~~~~~i~~A~~LGa~--~vv~~~g~~g~~~~~ 137 (333)
T 3ktc_A 62 TLSEVKDALKDAGL-K-AIGITPEIYLQKWSRGAFTNPDPAARAAAFELMHESAGIVRELGAN--YVKVWPGQDGWDYPF 137 (333)
T ss_dssp CHHHHHHHHHHHTC-E-EEEEEECTTSGGGTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCS--EEEECCTTCEESSTT
T ss_pred HHHHHHHHHHHcCC-e-EEEEecCcCcccccCCCCCCcCHHHHHHHHHHHHHHHHHHHHhCCC--EEEECCCCCCcCCCC
Confidence 34455556667775 5 767776532 1 1245666677777777777777777864 56666652 223321
Q ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEec
Q 005135 366 SKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSE 407 (712)
Q Consensus 366 s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~E 407 (712)
+.+.++..+.+++.++++++... ...|.+|
T Consensus 138 ----------~~~~~~~~~~~~~~l~~l~~~a~--~~~i~lE 167 (333)
T 3ktc_A 138 ----------QVSHKNLWKLAVDGMRDLAGANP--DVKFAIE 167 (333)
T ss_dssp ----------SSCHHHHHHHHHHHHHHHHHTCT--TSEEEEE
T ss_pred ----------cCCHHHHHHHHHHHHHHHHHHhh--cCCEEEE
Confidence 23566666778888888877542 2345555
No 85
>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*
Probab=35.11 E-value=3.9e+02 Score=27.50 Aligned_cols=104 Identities=15% Similarity=0.177 Sum_probs=63.6
Q ss_pred HHHHHHHHcCCCCccceEecCHHHHHHHHHhcCCCCCCcEEEe-CCCCCHHHHHHHHHhccCCCcEEEE-EC-----C--
Q 005135 175 FVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVC-NGFKDAGYITLALLARKLDLNVVIV-LE-----Q-- 245 (712)
Q Consensus 175 ~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~G~~~~p~~II~~-ng~K~~e~I~~Al~~~~~G~~v~Iv-VD-----s-- 245 (712)
.+++.+.+.+. -+.+|......++.|+++|. .||.. ++..+++.+..+.+ .|..+++. .. +
T Consensus 94 pvI~~l~~~~v--piSIDT~~~~Va~aAl~aGa-----~iINdVsg~~d~~m~~v~a~---~~~~vVlmh~~eG~p~tm~ 163 (294)
T 2dqw_A 94 PVLEAVLSLGV--PVSVDTRKPEVAEEALKLGA-----HLLNDVTGLRDERMVALAAR---HGVAAVVMHMPVPDPATMM 163 (294)
T ss_dssp HHHHHHHTTCS--CEEEECSCHHHHHHHHHHTC-----SEEECSSCSCCHHHHHHHHH---HTCEEEEECCSSSCTTTGG
T ss_pred HHHHHHHhCCC--eEEEECCCHHHHHHHHHhCC-----CEEEECCCCCChHHHHHHHH---hCCCEEEEcCCCCCCcccc
Confidence 34555554433 36889999999999999983 35543 23367777777665 44543221 22 1
Q ss_pred ------------HHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHH
Q 005135 246 ------------EEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEV 305 (712)
Q Consensus 246 ------------~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~ 305 (712)
.++|++..+.+.+.|++ +|-| .|. -.||-+.++-.++++.+++
T Consensus 164 ~~~~y~dv~~ev~~~l~~~i~~a~~~Gi~-~Iil--DPG--------------~Gf~kt~~~n~~ll~~l~~ 218 (294)
T 2dqw_A 164 AHARYRDVVAEVKAFLEAQARRALSAGVP-QVVL--DPG--------------FGFGKLLEHNLALLRRLDE 218 (294)
T ss_dssp GGCCCSSHHHHHHHHHHHHHHHHHHTTCS-CEEE--ECC--------------TTSSCCHHHHHHHHHTHHH
T ss_pred ccCccccHHHHHHHHHHHHHHHHHHCCCC-cEEE--cCC--------------CCcccCHHHHHHHHHHHHH
Confidence 45677777888888887 4443 221 1267777776777776654
No 86
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=34.66 E-value=93 Score=32.51 Aligned_cols=44 Identities=14% Similarity=0.140 Sum_probs=32.8
Q ss_pred CceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCC
Q 005135 262 RPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGS 321 (712)
Q Consensus 262 ~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGS 321 (712)
...|++|+++... .. =|++.++..++++.+.+.|. ..||+|.|+
T Consensus 209 ~~pv~vris~~~~-----~~-------~g~~~~~~~~~a~~l~~~Gv----d~i~v~~~~ 252 (338)
T 1z41_A 209 DGPLFVRVSASDY-----TD-------KGLDIADHIGFAKWMKEQGV----DLIDCSSGA 252 (338)
T ss_dssp CSCEEEEEECCCC-----ST-------TSCCHHHHHHHHHHHHHTTC----CEEEEECCC
T ss_pred CCcEEEEecCccc-----CC-------CCCCHHHHHHHHHHHHHcCC----CEEEEecCc
Confidence 5679999987421 11 17888999999999998873 478998874
No 87
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2
Probab=34.51 E-value=4e+02 Score=27.37 Aligned_cols=133 Identities=14% Similarity=0.169 Sum_probs=79.1
Q ss_pred CHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHH
Q 005135 222 DAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVK 301 (712)
Q Consensus 222 ~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~ 301 (712)
..+.|+.|.+. ..++. -+|+-|++.++-+.+.|++.+.+ |-|-+.+. . ..-+| .+.+...++
T Consensus 6 ~~~ll~~A~~~-~yAv~-AfNv~n~e~~~avl~AAe~~~sP--vIlq~s~~-----------~-~~y~g--~~~~~~~v~ 67 (286)
T 1gvf_A 6 TKYLLQDAQAN-GYAVP-AFNIHNAETIQAILEVCSEMRSP--VILAGTPG-----------T-FKHIA--LEEIYALCS 67 (286)
T ss_dssp SHHHHHHHHHH-TCCEE-EEECCSHHHHHHHHHHHHHHTCC--CEEEECTT-----------H-HHHSC--HHHHHHHHH
T ss_pred HHHHHHHHHHC-CCEEE-EEeeCCHHHHHHHHHHHHHhCCC--EEEECChh-----------H-HhhcC--HHHHHHHHH
Confidence 45677777764 35564 68999999999999999987653 34555321 0 01123 455556665
Q ss_pred HHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCCCCCCCCCCcCCCHHH
Q 005135 302 KLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEE 381 (712)
Q Consensus 302 ~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s~~~~~~~s~~yslee 381 (712)
.+.+.-.+ -+-||.--|. +.+.+++++ +.|+. .|.+|+|. ++++|
T Consensus 68 ~~a~~~~V--PValHlDHg~---~~e~i~~ai-----------~~GFt----------SVMiDgS~---------lp~ee 112 (286)
T 1gvf_A 68 AYSTTYNM--PLALHLDHHE---SLDDIRRKV-----------HAGVR----------SAMIDGSH---------FPFAE 112 (286)
T ss_dssp HHHHHTTS--CBEEEEEEEC---CHHHHHHHH-----------HTTCC----------EEEECCTT---------SCHHH
T ss_pred HHHHhCCC--cEEEEcCCCC---CHHHHHHHH-----------HcCCC----------eEEECCCC---------CCHHH
Confidence 55443333 3578876664 444333332 23433 33445542 56777
Q ss_pred HHHHHHHHHHHHHHhcCCCCCeEEecCcch
Q 005135 382 YASAVVQAIRYVCDRKNVKHPVLCSESGRA 411 (712)
Q Consensus 382 ya~~Iv~~l~~~~~~~gv~~p~Li~EPGRa 411 (712)
=.+...+ +-++|...|+ .+-.|.|+-
T Consensus 113 Ni~~Tk~-vv~~ah~~gv---sVEaElG~v 138 (286)
T 1gvf_A 113 NVKLVKS-VVDFCHSQDC---SVEAELGRL 138 (286)
T ss_dssp HHHHHHH-HHHHHHHTTC---EEEEEESCC
T ss_pred HHHHHHH-HHHHHHHcCC---EEEEEEeec
Confidence 6555444 4457777787 799999975
No 88
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}
Probab=33.52 E-value=2.1e+02 Score=28.29 Aligned_cols=96 Identities=14% Similarity=0.085 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHcCCCCceeEEEEec-----CCCC--CChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCCC
Q 005135 295 QILRVVKKLEVAEMLDCFQLLHFHI-----GSQI--PSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSK 367 (712)
Q Consensus 295 e~~~~l~~l~~~~~L~~l~GLHfHi-----GSqi--~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s~ 367 (712)
++.++.+.+++.|+ . +..+|... .-.. .+.....+.++.+.+.++.+.++|.+ +|- +-..|. +.
T Consensus 69 ~~~~~~~~l~~~gl-~-~~~~~~~~p~~~~~~~l~~~d~~~r~~~~~~~~~~i~~A~~lG~~--~v~-~~~~g~-~~--- 139 (290)
T 2zvr_A 69 DWNEVKILSEELNL-P-ICAIGTGQAYLADGLSLTHPNDEIRKKAIERVVKHTEVAGMFGAL--VII-GLVRGR-RE--- 139 (290)
T ss_dssp CHHHHHHHHHHHTC-C-EEEEECTHHHHTTCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCE--EEE-SGGGCC-CT---
T ss_pred hHHHHHHHHHHcCC-e-EEEEeccCccccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCC--EEE-ecCCCC-CC---
Confidence 34455566677775 5 77788721 2122 35555566677777777766777854 343 210121 11
Q ss_pred CCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCc
Q 005135 368 SADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESG 409 (712)
Q Consensus 368 ~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPG 409 (712)
..+.++..+.+++.++++++... + .+|.+|+-
T Consensus 140 --------~~~~~~~~~~~~~~l~~l~~~a~-~-v~l~lEn~ 171 (290)
T 2zvr_A 140 --------GRSYEETEELFIESMKRLLELTE-H-AKFVIEPL 171 (290)
T ss_dssp --------TSCHHHHHHHHHHHHHHHHHHCS-S-CCEEECCC
T ss_pred --------CcCHHHHHHHHHHHHHHHHHHhc-c-CEEEEEeC
Confidence 13456666777777888776543 2 58999984
No 89
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=30.12 E-value=7.1e+02 Score=28.92 Aligned_cols=104 Identities=15% Similarity=-0.031 Sum_probs=55.6
Q ss_pred HHHHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHH-hccCCCcEEEEE-------C------CHHHHHHHHHHHHhcCC
Q 005135 196 KPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALL-ARKLDLNVVIVL-------E------QEEEVDLVIEISKKLNV 261 (712)
Q Consensus 196 ~~EL~~Al~~G~~~~p~~II~~ng~K~~e~I~~Al~-~~~~G~~v~IvV-------D------s~~EL~~I~~~a~~~g~ 261 (712)
...++.|.++|. +.+-+.....+.+.++.+++ +++.|..+...+ | +++.+..+.+.+.+.|.
T Consensus 200 ~~~i~~a~~~Gv----d~irIf~s~n~l~~l~~~i~~ak~~G~~v~~~i~~~~d~~dp~r~~~~~e~~~~~a~~l~~~Ga 275 (718)
T 3bg3_A 200 FKFCEVAKENGM----DVFRVFDSLNYLPNMLLGMEAAGSAGGVVEAAISYTGDVADPSRTKYSLQYYMGLAEELVRAGT 275 (718)
T ss_dssp HHHHHHHHHHTC----CEEEEECSSCCHHHHHHHHHHHHTTTSEEEEEEECCSCTTCTTCCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCc----CEEEEEecHHHHHHHHHHHHHHHHcCCeEEEEEEeeccccCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 455677777773 23322233344444544443 234554433222 1 34444455444445554
Q ss_pred CceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHc-CCCCceeEEEEecCCCC
Q 005135 262 RPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVA-EMLDCFQLLHFHIGSQI 323 (712)
Q Consensus 262 ~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~-~~L~~l~GLHfHiGSqi 323 (712)
. .|+|. +|.| .+.+.++.++++.+++. +.+ ..++|+|--++.
T Consensus 276 ~---~I~l~----------DT~G-----~~~P~~v~~lV~~lk~~~p~~--~I~~H~Hnd~Gl 318 (718)
T 3bg3_A 276 H---ILCIK----------DMAG-----LLKPTACTMLVSSLRDRFPDL--PLHIHTHDTSGA 318 (718)
T ss_dssp S---EEEEE----------CTTS-----CCCHHHHHHHHHHHHHHSTTC--CEEEECCCTTSC
T ss_pred C---EEEEc----------CcCC-----CcCHHHHHHHHHHHHHhCCCC--eEEEEECCCccH
Confidence 3 23332 2332 46788999999998764 344 469999987763
No 90
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=28.96 E-value=1.6e+02 Score=28.74 Aligned_cols=52 Identities=12% Similarity=0.038 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHcCCCCceeEEEEecCCCCCC-hHHHHHHHHHHHHHHHHHHHcCCCC
Q 005135 295 QILRVVKKLEVAEMLDCFQLLHFHIGSQIPS-TALLTDGVGEAAQIYCELVRLGANM 350 (712)
Q Consensus 295 e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d-~~~~~~ai~~~~~~~~~L~~~G~~l 350 (712)
++.++.+.+++.|+ . +..+|+... ..+ ...++++++.+.+.++...++|.+.
T Consensus 48 ~~~~~~~~l~~~gl-~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~A~~lG~~~ 100 (281)
T 3u0h_A 48 GDAAVEAMFQRRGL-V-LANLGLPLN--LYDSEPVFLRELSLLPDRARLCARLGARS 100 (281)
T ss_dssp CHHHHHHHHHTTTC-E-ECCEECCSC--TTSCHHHHHHHHHTHHHHHHHHHHTTCCE
T ss_pred CHHHHHHHHHHcCC-c-eEEeccccc--ccCCCHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 35556666777775 5 667776532 222 2345666767677777777788653
No 91
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=28.91 E-value=2.7e+02 Score=29.28 Aligned_cols=50 Identities=14% Similarity=0.236 Sum_probs=33.6
Q ss_pred HHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCC
Q 005135 255 ISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGS 321 (712)
Q Consensus 255 ~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGS 321 (712)
+.+..|....|++|+++.. |. .-|.+.++..++++.|.+. ++ .||...|.
T Consensus 203 Vr~avg~d~pv~vRls~~~-----~~-------~~g~~~~~~~~~a~~l~~~--vd---~i~vs~g~ 252 (343)
T 3kru_A 203 VRKNWPENKPIFVRVSADD-----YM-------EGGINIDMMVEYINMIKDK--VD---LIDVSSGG 252 (343)
T ss_dssp HHHTSCTTSCEEEEEECCC-----SS-------TTSCCHHHHHHHHHHHTTT--CS---EEEEECCC
T ss_pred HHhcCCccCCeEEEeechh-----hh-------ccCccHHHHHHHHHHhhcc--cc---EEeccCCc
Confidence 3334555568999998742 21 1178889999999988876 55 57775453
No 92
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=28.00 E-value=4.8e+02 Score=26.33 Aligned_cols=82 Identities=9% Similarity=0.063 Sum_probs=52.5
Q ss_pred HHHHHHHHHc-CCCCccceEecCHHHHHHHHHh--cCCCCCCcEEEe-CCCCC--HHHHHHHHHhccCCCcEEEEECC--
Q 005135 174 RFVVEDIVKF-GSQFRFGLEAGSKPELLLAMSC--LCKGSPEALLVC-NGFKD--AGYITLALLARKLDLNVVIVLEQ-- 245 (712)
Q Consensus 174 ~~Vl~~l~~~-G~~~~~GlEvaS~~EL~~Al~~--G~~~~p~~II~~-ng~K~--~e~I~~Al~~~~~G~~v~IvVDs-- 245 (712)
..+++.+.+. +.. +.+|......++.|+++ | ..||.. ++.++ ++.+..+.+ .|..+ |..-.
T Consensus 67 ~~vi~~l~~~~~~p--isIDT~~~~v~~aal~a~~G-----a~iINdvs~~~d~~~~~~~~~a~---~~~~v-v~m~~d~ 135 (271)
T 2yci_X 67 EWLVKTIQEVVDLP--CCLDSTNPDAIEAGLKVHRG-----HAMINSTSADQWKMDIFFPMAKK---YEAAI-IGLTMNE 135 (271)
T ss_dssp HHHHHHHHHHCCCC--EEEECSCHHHHHHHHHHCCS-----CCEEEEECSCHHHHHHHHHHHHH---HTCEE-EEESCBT
T ss_pred HHHHHHHHHhCCCe--EEEeCCCHHHHHHHHHhCCC-----CCEEEECCCCccccHHHHHHHHH---cCCCE-EEEecCC
Confidence 4566777665 433 68899999999999999 6 346543 34333 445555543 55553 33322
Q ss_pred ----------HHHHHHHHHHHHhcCCCc-eEE
Q 005135 246 ----------EEEVDLVIEISKKLNVRP-VIG 266 (712)
Q Consensus 246 ----------~~EL~~I~~~a~~~g~~~-~Ig 266 (712)
.+.++++.+.+.+.|+++ +|-
T Consensus 136 ~G~p~t~~~~~~~l~~~~~~a~~~Gi~~~~Ii 167 (271)
T 2yci_X 136 KGVPKDANDRSQLAMELVANADAHGIPMTELY 167 (271)
T ss_dssp TBCCCSHHHHHHHHHHHHHHHHHTTCCGGGEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCcccEE
Confidence 777888888888888765 444
No 93
>3m1r_A Formimidoylglutamase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: CAC; 2.20A {Bacillus subtilis}
Probab=27.95 E-value=4.1e+02 Score=27.43 Aligned_cols=111 Identities=14% Similarity=0.053 Sum_probs=59.4
Q ss_pred HHHHHHhcCCCCCCcEEEeCCC---CCHHHHHHHHHhccCCCcEEEEECCHHHH--HHHHH-HHHhcC-CCceEEEEEee
Q 005135 199 LLLAMSCLCKGSPEALLVCNGF---KDAGYITLALLARKLDLNVVIVLEQEEEV--DLVIE-ISKKLN-VRPVIGARAKL 271 (712)
Q Consensus 199 L~~Al~~G~~~~p~~II~~ng~---K~~e~I~~Al~~~~~G~~v~IvVDs~~EL--~~I~~-~a~~~g-~~~~IgLRVn~ 271 (712)
+..++..+. +.+++++..+-- -++++.+.+-+ .|++ ++..+.+.+. +.+.+ +.+.++ ..-.|.|=+.+
T Consensus 172 ~~~~~~~~~-~~~~~~~~iGiR~~~~~~~e~~~~~~---~g~~-~~~~~ei~~~g~~~v~~~~~~~~~~~~~~vylSiDi 246 (322)
T 3m1r_A 172 FRRLLDEEI-IEGQHLIQLGIREFSNSQAYEAYAKK---HNVN-IHTMDMIREKGLIPTIKEILPVVQDKTDFIFISVDM 246 (322)
T ss_dssp HHHHHHTTS-SCGGGEEEEEECTTSSCHHHHHHHHH---TTCE-EEEHHHHHHHCHHHHHHHHHHHHHTTCSEEEEEEEG
T ss_pred HHHHHhccC-CCCceEEEEeeCCCCCCHHHHHHHHH---CCCE-EEEHHHHhhcCHHHHHHHHHHHhhccCCeEEEEEee
Confidence 455555543 456776554432 36777777654 5665 3444444331 11222 112111 11257777766
Q ss_pred CCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEe
Q 005135 272 RTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFH 318 (712)
Q Consensus 272 ~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfH 318 (712)
+.-... .....+-....|++..|+.++++.+.+.+. ++|+.+-
T Consensus 247 DvLDpa-~aPgtgtp~pgGlt~~e~~~il~~l~~~~~---vvg~Div 289 (322)
T 3m1r_A 247 DVLDQS-HAPGCPAIGPGGLYTDELLEAVKYIAQQPN---VAGIEIV 289 (322)
T ss_dssp GGBCTT-TCTTSSSCCSSCBCHHHHHHHHHHHHTSTT---EEEEEEE
T ss_pred cccChh-hCCCCCCCCCCCCCHHHHHHHHHHHhccCC---EEEEEEE
Confidence 532111 111112345679999999999999976553 6788764
No 94
>2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A*
Probab=26.47 E-value=2.4e+02 Score=29.34 Aligned_cols=38 Identities=11% Similarity=0.021 Sum_probs=23.2
Q ss_pred cceEecCHHHHHHHHHhcCCCCCCcEEEeC-C-CCCHHHHHHHHH
Q 005135 189 FGLEAGSKPELLLAMSCLCKGSPEALLVCN-G-FKDAGYITLALL 231 (712)
Q Consensus 189 ~GlEvaS~~EL~~Al~~G~~~~p~~II~~n-g-~K~~e~I~~Al~ 231 (712)
+.+|......++.|+++|. .||..- + ..+++.+..+.+
T Consensus 88 iSIDT~~~~Va~aAl~aGa-----~iINDVsg~~~d~~m~~v~a~ 127 (314)
T 2vef_A 88 ISIDTWKSQVAEAALAAGA-----DLVNDITGLMGDEKMPHVVAE 127 (314)
T ss_dssp EEEECSCHHHHHHHHHTTC-----CEEEETTTTCSCTTHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHcCC-----CEEEECCCCCCChHHHHHHHH
Confidence 5778788888888888872 355322 2 234556666544
No 95
>1a0c_A Xylose isomerase; ketolisomerase, xylose metabolism, glucose-fructose interconversion, hydride transfer; 2.50A {Thermoanaerobacteriumthermosulfurigenes} SCOP: c.1.15.3 PDB: 1a0d_A 1a0e_A
Probab=25.88 E-value=6.6e+02 Score=27.16 Aligned_cols=229 Identities=10% Similarity=0.083 Sum_probs=0.0
Q ss_pred CHHHHHHHhCCCCCCCCCCCCCcEEEEcHHHH----------HHHHHHHHHHHHHhHHhcCC-----------CCcceee
Q 005135 107 DLLKIVKKVSDPKSVGGLGLQLPLIVRLPDVL----------RDRLESLHSAFEFAIQTQGY-----------EARYQGV 165 (712)
Q Consensus 107 ~l~el~~~~~~~~~~~~~g~~tPl~V~d~d~L----------~~ni~~l~~af~~a~~~~~y-----------~~~~~~~ 165 (712)
...+.+++ +|.+.+=+....+ ..++.+..+.+.+++++.|. .++|..-
T Consensus 84 ~ale~~a~-----------lG~~~VE~~~~~~~p~~~~~~e~~~~l~~~~~~lk~~l~~~GL~~~~~t~nl~~h~~y~~G 152 (438)
T 1a0c_A 84 AAFEFFDK-----------INAPYFCFHDRDIAPEGDTLRETNKNLDTIVAMIKDYLKTSKTKVLWGTANLFSNPRFVHG 152 (438)
T ss_dssp HHHHHHHH-----------HTCSEEEEEHHHHSCCCSSHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECCCSSSGGGTTC
T ss_pred HHHHHHHH-----------cCCCEEEeccccccccccchhhhhccHHHHHHHHHHHHHHhCCceEeccccccCCCccccC
Q ss_pred eeeccCCcHHHHHHHHHcCCCCccceEecCHHHHHHHHHhcCCCCCCcEEEeCCC---------CCHHHHHHHHHhccCC
Q 005135 166 FPVKCNQDRFVVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCNGF---------KDAGYITLALLARKLD 236 (712)
Q Consensus 166 YavKaN~~~~Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~G~~~~p~~II~~ng~---------K~~e~I~~Al~~~~~G 236 (712)
-+ +++++.+-+...+.- +..+..|.++|. ..+.+..|. -..+.++..+++
T Consensus 153 ~~--~spd~evR~~ai~~l-----------k~aId~A~~LGa----~~vv~~~G~~G~~~~~~~~~~~~~~~~~e~---- 211 (438)
T 1a0c_A 153 AS--TSCNADVFAYSAAQV-----------KKALEITKELGG----ENYVFWGGREGYETLLNTDMEFELDNFARF---- 211 (438)
T ss_dssp ST--TCSCHHHHHHHHHHH-----------HHHHHHHHHTTC----SEEEECCTTSEESCGGGCCHHHHHHHHHHH----
T ss_pred CC--CCCCHHHHHHHHHHH-----------HHHHHHHHHcCC----CEEEEccCCCccccCCCCCHHHHHHHHHHH----
Q ss_pred CcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCcccc----------CCCCCCCCCCH---------HHHH
Q 005135 237 LNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGST----------SGEKGKFGLTT---------TQIL 297 (712)
Q Consensus 237 ~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~t----------gg~~SKFGl~~---------~e~~ 297 (712)
|..+.+.+++.|+..+|.|--.+.....+....+ -+...++|+.. .++.
T Consensus 212 ------------L~~~~~~A~~~Gv~v~l~IEp~p~~~~~~~~~~t~~~al~li~~vg~pn~vgv~lDt~H~~~~g~di~ 279 (438)
T 1a0c_A 212 ------------LHMAVDYAKEIGFEGQFLIEPKPKEPTKHQYDFDVANVLAFLRKYDLDKYFKVNIEANHATLAFHDFQ 279 (438)
T ss_dssp ------------HHHHHHHHHHTTCCSEEEECCCSCSSSSEESSCSHHHHHHHHHHTTCTTTEEEEEEHHHHHHTTCCHH
T ss_pred ------------HHHHHHHHHhcCCCcEEEEeeCCCCCCCCcccCCHHHHHHHHHHcCCCCeEEEEEEhhhhhhcCCCHH
Q ss_pred HHHHHHHHcCCCCceeEEEEecC--CCCCChHHHHHHHH-HHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCCCCCCCCCC
Q 005135 298 RVVKKLEVAEMLDCFQLLHFHIG--SQIPSTALLTDGVG-EAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSADSDLS 374 (712)
Q Consensus 298 ~~l~~l~~~~~L~~l~GLHfHiG--Sqi~d~~~~~~ai~-~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s~~~~~~~s 374 (712)
..++++...+. |..+|++-+ -.-.+...+-..+. ....++..|++.|+.- |+++++|...+.
T Consensus 280 ~~i~~~~~~~~---L~hvHlnD~~~~~g~d~d~~p~~~~~~~~~i~~~L~~~GY~~------G~v~~E~~p~~~------ 344 (438)
T 1a0c_A 280 HELRYARINGV---LGSIDANTGDMLLGWDTDQFPTDIRMTTLAMYEVIKMGGFDK------GGLNFDAKVRRA------ 344 (438)
T ss_dssp HHHHHHHHTTC---EEEEECCBCCTTSBSCCCBCCCCHHHHHHHHHHHHHTTSCSS------CCEEECCCCCTT------
T ss_pred HHHHHhcCCCc---EEEEECCCCCCCCCCCCCcCCCcchHHHHHHHHHHHHhCCCC------CceEEEeeccCC------
Q ss_pred cCCCHHHHHHHHHHHHHHHHH
Q 005135 375 VAYTLEEYASAVVQAIRYVCD 395 (712)
Q Consensus 375 ~~ysleeya~~Iv~~l~~~~~ 395 (712)
..+.++........++.+.+
T Consensus 345 -s~e~ed~~~s~~~~~~~~a~ 364 (438)
T 1a0c_A 345 -SFEPEDLFLGHIAGMDAFAK 364 (438)
T ss_dssp -CCSTHHHHHHHHHHHHHHHH
T ss_pred -CCChhHHHHHHHHHHHHHHH
No 96
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=25.48 E-value=5.4e+02 Score=26.07 Aligned_cols=95 Identities=18% Similarity=0.149 Sum_probs=52.8
Q ss_pred CHHHHHHHHHhccCCCcEEEEECCH-----------------HHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCC
Q 005135 222 DAGYITLALLARKLDLNVVIVLEQE-----------------EEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSG 284 (712)
Q Consensus 222 ~~e~I~~Al~~~~~G~~v~IvVDs~-----------------~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg 284 (712)
+.+.|+.|+++ |+..+-++++. +.+..+.+.+++.|+. ++..+....+..
T Consensus 85 ~~~~i~~a~~a---G~~~v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~----V~~~l~~~~~~e------ 151 (302)
T 2ftp_A 85 NLKGFEAALES---GVKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVR----VRGYISCVLGCP------ 151 (302)
T ss_dssp SHHHHHHHHHT---TCCEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCE----EEEEEECTTCBT------
T ss_pred CHHHHHHHHhC---CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe----EEEEEEEEeeCC------
Confidence 56677777763 45533333443 4456677777777654 444443221110
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHH
Q 005135 285 EKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGE 335 (712)
Q Consensus 285 ~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~ 335 (712)
..+ -.+++++.++++.+.+.|. ++| .|.=-.|. ..+..+.+.++.
T Consensus 152 ~~~--~~~~~~~~~~~~~~~~~G~-d~i-~l~DT~G~--~~P~~~~~lv~~ 196 (302)
T 2ftp_A 152 YDG--DVDPRQVAWVARELQQMGC-YEV-SLGDTIGV--GTAGATRRLIEA 196 (302)
T ss_dssp TTB--CCCHHHHHHHHHHHHHTTC-SEE-EEEESSSC--CCHHHHHHHHHH
T ss_pred cCC--CCCHHHHHHHHHHHHHcCC-CEE-EEeCCCCC--cCHHHHHHHHHH
Confidence 011 2567899999999999985 533 44444454 567654443333
No 97
>3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair, TIM barrel, DNA DA endonuclease, hydrolase, metal-binding; 1.60A {Geobacillus kaustophilus} PDB: 1xp3_A
Probab=25.18 E-value=3e+02 Score=27.34 Aligned_cols=97 Identities=13% Similarity=0.142 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCceeEEEEecCCC--C--CC-hHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCC
Q 005135 291 LTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQ--I--PS-TALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDG 365 (712)
Q Consensus 291 l~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSq--i--~d-~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~ 365 (712)
++..++.++.+.+++.++ . . +.+|.... . .+ .+..+++++.+.+.++...++|.+ +|.+-.|... +
T Consensus 50 ~~~~~~~~~~~~l~~~gl-~-~--~~~h~~~~~nl~s~d~~~~r~~~~~~~~~~i~~A~~lGa~--~vv~h~g~~~---~ 120 (303)
T 3aal_A 50 IEELNIEAGRQHMQAHGI-E-E--IVVHAPYIINIGNTTNLDTFSLGVDFLRAEIERTEAIGAK--QLVLHPGAHV---G 120 (303)
T ss_dssp SGGGCHHHHHHHHHHTTC-C-E--EEEECCTTCCTTCSSCHHHHHHHHHHHHHHHHHHHHHTCS--EEEECCEECT---T
T ss_pred CCHHHHHHHHHHHHHcCC-c-e--EEEeccccccCCCCCcHHHHHHHHHHHHHHHHHHHHcCCC--EEEECCCcCC---C
Confidence 344566677777777775 3 2 33443221 1 24 556667777777777777777865 4555333211 0
Q ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEecCc
Q 005135 366 SKSADSDLSVAYTLEEYASAVVQAIRYVCDRKNVKHPVLCSESG 409 (712)
Q Consensus 366 s~~~~~~~s~~ysleeya~~Iv~~l~~~~~~~gv~~p~Li~EPG 409 (712)
.+.++..+.+++.++++++.. ...+|.+|+=
T Consensus 121 -----------~~~~~~~~~~~~~l~~l~~~a--~gv~l~lEn~ 151 (303)
T 3aal_A 121 -----------AGVEAGLRQIIRGLNEVLTRE--QNVQIALETM 151 (303)
T ss_dssp -----------SCHHHHHHHHHHHHHHHCCSS--CSCEEEEECC
T ss_pred -----------CCHHHHHHHHHHHHHHHHHhC--CCCEEEEecC
Confidence 134556667777788776543 2348888874
No 98
>1r85_A Endo-1,4-beta-xylanase; hydrolase; HET: GOL; 1.45A {Geobacillus stearothermophilus} SCOP: c.1.8.3 PDB: 1hiz_A* 1r87_A* 3mmd_A* 1r86_A
Probab=25.12 E-value=79 Score=33.89 Aligned_cols=58 Identities=22% Similarity=0.267 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHcCC-CCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCC--CcEEEEcCC
Q 005135 293 TTQILRVVKKLEVAEM-LDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGAN--MQVIDIGGG 358 (712)
Q Consensus 293 ~~e~~~~l~~l~~~~~-L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~--l~~IDIGGG 358 (712)
...+.++++.+++.|. ++ .+|+|.|++...++++.+++.+++ +.++|.+ ++.+||...
T Consensus 211 ~~~~~~~v~~l~~~g~piD-gIG~Q~H~~~~~p~~~~~~~~l~~-------~a~lGlpI~iTElDi~~~ 271 (379)
T 1r85_A 211 RTALYNLVKQLKEEGVPID-GIGHQSHIQIGWPSEAEIEKTINM-------FAALGLDNQITELDVSMY 271 (379)
T ss_dssp HHHHHHHHHHHHHTTCCCC-EEEECCEECSSSSCHHHHHHHHHH-------HHHTTCEEEEEEEEECSS
T ss_pred HHHHHHHHHHHHHCCCcee-EEEEeEEecCCCCCHHHHHHHHHH-------HHhcCCeEEEeeccccCC
Confidence 4567788899988875 67 779988987655666655544433 3456764 667898764
No 99
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Probab=25.10 E-value=5.2e+02 Score=26.32 Aligned_cols=105 Identities=11% Similarity=0.076 Sum_probs=64.4
Q ss_pred HHHHHHHHc-CCCCccceEecCHHHHHHHHHhcCCCCCCcEEEe-CCCCCHHHHHHHHHhccCCCcEEEEE-----CC--
Q 005135 175 FVVEDIVKF-GSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVC-NGFKDAGYITLALLARKLDLNVVIVL-----EQ-- 245 (712)
Q Consensus 175 ~Vl~~l~~~-G~~~~~GlEvaS~~EL~~Al~~G~~~~p~~II~~-ng~K~~e~I~~Al~~~~~G~~v~IvV-----Ds-- 245 (712)
.+++.+.+. +. -+.+|......++.|+++|. .||.. ++.++++.++.+.+ .|..+++.- .+
T Consensus 80 pvi~~l~~~~~~--piSIDT~~~~va~aAl~aGa-----~iINdvsg~~d~~~~~~~a~---~~~~vVlmh~~G~p~tm~ 149 (282)
T 1aj0_A 80 PVVEAIAQRFEV--WISVDTSKPEVIRESAKVGA-----HIINDIRSLSEPGALEAAAE---TGLPVCLMHMQGNPKTMQ 149 (282)
T ss_dssp HHHHHHHHHCCC--EEEEECCCHHHHHHHHHTTC-----CEEEETTTTCSTTHHHHHHH---HTCCEEEECCSSCTTCCS
T ss_pred HHHHHHHhhcCC--eEEEeCCCHHHHHHHHHcCC-----CEEEECCCCCCHHHHHHHHH---hCCeEEEEccCCCCcccc
Confidence 345555443 33 26788888888999999873 35543 23467777777665 445433321 11
Q ss_pred ------------HHHHHHHHHHHHhcCCCc-eEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHH
Q 005135 246 ------------EEEVDLVIEISKKLNVRP-VIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEV 305 (712)
Q Consensus 246 ------------~~EL~~I~~~a~~~g~~~-~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~ 305 (712)
.+++....+.+.+.|+++ +|-| .|. -.||=+.++-.++++.+++
T Consensus 150 ~~~~y~d~~~ev~~~l~~~i~~a~~~Gi~~~~Iil--DPg--------------~gf~k~~~~n~~ll~~l~~ 206 (282)
T 1aj0_A 150 EAPKYDDVFAEVNRYFIEQIARCEQAGIAKEKLLL--DPG--------------FGFGKNLSHNYSLLARLAE 206 (282)
T ss_dssp CCCCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEE--ECC--------------TTSSCCHHHHHHHHHTGGG
T ss_pred ccCccchHHHHHHHHHHHHHHHHHHcCCChhhEEE--eCC--------------CCcccCHHHHHHHHHHHHH
Confidence 777888888888888764 4443 232 2356667776677666654
No 100
>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}
Probab=24.86 E-value=1.2e+02 Score=30.59 Aligned_cols=54 Identities=9% Similarity=0.026 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHcCCCCceeEEEEe-cC----C-CCCChHHHHHHHHHHHHHHHHHHHcCCCC
Q 005135 295 QILRVVKKLEVAEMLDCFQLLHFH-IG----S-QIPSTALLTDGVGEAAQIYCELVRLGANM 350 (712)
Q Consensus 295 e~~~~l~~l~~~~~L~~l~GLHfH-iG----S-qi~d~~~~~~ai~~~~~~~~~L~~~G~~l 350 (712)
++.++.+.+++.|+ . +..+|.. .+ . ...+.+..+++++.+.+.++...++|.+.
T Consensus 71 ~~~~~~~~l~~~Gl-~-i~~~~~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~A~~lGa~~ 130 (316)
T 3qxb_A 71 RAIAYAKAFRKAGL-T-IESTFGGLASYTYNHFLAPTLELQSLGYQHLKRAIDMTAAMEVPA 130 (316)
T ss_dssp HHHHHHHHHHHTTC-E-EEEEECCHHHHTSCBTTCSSHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHcCC-e-EEEeeccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 45566667777775 5 6555532 11 0 12356666777777777777777888764
No 101
>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0
Probab=23.60 E-value=6.1e+02 Score=26.00 Aligned_cols=134 Identities=15% Similarity=0.132 Sum_probs=78.9
Q ss_pred CHHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHH
Q 005135 222 DAGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVK 301 (712)
Q Consensus 222 ~~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~ 301 (712)
..+.|+.|.+. ..++. -+|+-|++.+.-+.+.|++.+. +|-|-+.+.. .||=.....+..+++
T Consensus 9 ~~~ll~~A~~~-~yAV~-AfNv~n~e~~~avi~AAee~~s--PvIlq~s~~~-------------~~~~~g~~~~~~~v~ 71 (288)
T 3q94_A 9 MKEMLNKALEG-KYAVG-QFNMNNLEWTQAILAAAEEEKS--PVILGVSEGA-------------ARHMTGFKTVVAMVK 71 (288)
T ss_dssp SHHHHHHHHHH-TCCEE-EEECCSHHHHHHHHHHHHHTTC--CEEEEEEHHH-------------HHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHC-CcEEE-EEeeCCHHHHHHHHHHHHHhCC--CEEEECChhh-------------hhhcCCHHHHHHHHH
Confidence 46777877764 35555 6999999999999999998764 4556664321 222011233445555
Q ss_pred HHHH--cCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCCCCCCCCCCcCCCH
Q 005135 302 KLEV--AEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYTL 379 (712)
Q Consensus 302 ~l~~--~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s~~~~~~~s~~ysl 379 (712)
.+.+ .-.+ -+.||.--|. +.+.++++++ .|+. .|.+|+|. +++
T Consensus 72 ~~A~~~~~~V--PValHlDHg~---~~e~i~~ai~-----------~GFt----------SVMiDgS~---------~p~ 116 (288)
T 3q94_A 72 ALIEEMNITV--PVAIHLDHGS---SFEKCKEAID-----------AGFT----------SVMIDASH---------HPF 116 (288)
T ss_dssp HHHHHTTCCS--CEEEEEEEEC---SHHHHHHHHH-----------HTCS----------EEEECCTT---------SCH
T ss_pred HHHHhcCCCC--cEEEECCCCC---CHHHHHHHHH-----------cCCC----------eEEEeCCC---------CCH
Confidence 5544 3223 3578876664 4543333322 2443 33445543 567
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEEecCcch
Q 005135 380 EEYASAVVQAIRYVCDRKNVKHPVLCSESGRA 411 (712)
Q Consensus 380 eeya~~Iv~~l~~~~~~~gv~~p~Li~EPGRa 411 (712)
+|=.+...+ +-++|...|+ .+-.|.|+-
T Consensus 117 eeNi~~Tk~-vv~~ah~~gv---sVEaElG~v 144 (288)
T 3q94_A 117 EENVETTKK-VVEYAHARNV---SVEAELGTV 144 (288)
T ss_dssp HHHHHHHHH-HHHHHHTTTC---EEEEEESBC
T ss_pred HHHHHHHHH-HHHHHHHcCC---eEEEEeeee
Confidence 766554444 4457777776 788888864
No 102
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}
Probab=23.20 E-value=6.3e+02 Score=26.06 Aligned_cols=71 Identities=17% Similarity=0.100 Sum_probs=42.2
Q ss_pred cCCCcEEEEEC-----CHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHc-C
Q 005135 234 KLDLNVVIVLE-----QEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVA-E 307 (712)
Q Consensus 234 ~~G~~v~IvVD-----s~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~-~ 307 (712)
+.|..+.+..+ +++.+..+.+.+.+.|.. +|++. +|.| .+++.++.++++.+++. +
T Consensus 133 ~~g~~v~f~~~d~~~~~~~~~~~~~~~~~~~G~~-----~i~l~--------DT~G-----~~~P~~v~~lv~~l~~~~~ 194 (325)
T 3eeg_A 133 KVVHEVEFFCEDAGRADQAFLARMVEAVIEAGAD-----VVNIP--------DTTG-----YMLPWQYGERIKYLMDNVS 194 (325)
T ss_dssp TTSSEEEEEEETGGGSCHHHHHHHHHHHHHHTCS-----EEECC--------BSSS-----CCCHHHHHHHHHHHHHHCS
T ss_pred HCCCEEEEEccccccchHHHHHHHHHHHHhcCCC-----EEEec--------CccC-----CcCHHHHHHHHHHHHHhCC
Confidence 46666555543 455555555555556643 33332 2332 36788999999988764 4
Q ss_pred CCC-ceeEEEEecCCC
Q 005135 308 MLD-CFQLLHFHIGSQ 322 (712)
Q Consensus 308 ~L~-~l~GLHfHiGSq 322 (712)
.++ ...++|+|--.+
T Consensus 195 ~~~~~~i~~H~Hnd~G 210 (325)
T 3eeg_A 195 NIDKAILSAHCHNDLG 210 (325)
T ss_dssp CGGGSEEEECBCCTTS
T ss_pred CCCceEEEEEeCCCCC
Confidence 210 146899997665
No 103
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=22.57 E-value=5.1e+02 Score=24.76 Aligned_cols=90 Identities=9% Similarity=-0.027 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCCCCCCCCCC
Q 005135 295 QILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSADSDLS 374 (712)
Q Consensus 295 e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s~~~~~~~s 374 (712)
++.++.+.+++.|+ . +..+|....-...+ +..++.++++++ ...++|. ++|-+..|..- .
T Consensus 52 ~~~~~~~~~~~~gl-~-~~~~~~~~~~~~~~-~~~~~~~~~~i~---~a~~lG~--~~v~~~~g~~~----~-------- 111 (272)
T 2q02_A 52 NYNQVRNLAEKYGL-E-IVTINAVYPFNQLT-EEVVKKTEGLLR---DAQGVGA--RALVLCPLNDG----T-------- 111 (272)
T ss_dssp CHHHHHHHHHHTTC-E-EEEEEEETTTTSCC-HHHHHHHHHHHH---HHHHHTC--SEEEECCCCSS----B--------
T ss_pred CHHHHHHHHHHcCC-e-EEechhhhccCCcH-HHHHHHHHHHHH---HHHHhCC--CEEEEccCCCc----h--------
Confidence 44555566677775 5 77888764322223 223334444444 3445565 45665544321 0
Q ss_pred cCCCHHHH-HHHHHHHHHHHHHhcCCCCCeEEecCcc
Q 005135 375 VAYTLEEY-ASAVVQAIRYVCDRKNVKHPVLCSESGR 410 (712)
Q Consensus 375 ~~ysleey-a~~Iv~~l~~~~~~~gv~~p~Li~EPGR 410 (712)
-.++.+ ++.+.. +.+.+++.|+ +|.+|+=.
T Consensus 112 --~~~~~~~~~~l~~-l~~~a~~~gv---~l~~E~~~ 142 (272)
T 2q02_A 112 --IVPPEVTVEAIKR-LSDLFARYDI---QGLVEPLG 142 (272)
T ss_dssp --CCCHHHHHHHHHH-HHHHHHTTTC---EEEECCCC
T ss_pred --hHHHHHHHHHHHH-HHHHHHHcCC---EEEEEecC
Confidence 134455 444433 3445666776 89999853
No 104
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1
Probab=22.36 E-value=6.3e+02 Score=25.68 Aligned_cols=104 Identities=13% Similarity=0.063 Sum_probs=62.8
Q ss_pred HHHHHHHcCCCCccceEecCHHHHHHHHHhcCCCCCCcEEEeC-CC-CCHHHHHHHHHhccCCCcEEEEEC---------
Q 005135 176 VVEDIVKFGSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCN-GF-KDAGYITLALLARKLDLNVVIVLE--------- 244 (712)
Q Consensus 176 Vl~~l~~~G~~~~~GlEvaS~~EL~~Al~~G~~~~p~~II~~n-g~-K~~e~I~~Al~~~~~G~~v~IvVD--------- 244 (712)
+++.+.+.+. -+.+|......++.|+++|. .||..- +. ++++.++.+.+ .|..+++.--
T Consensus 72 vi~~l~~~~~--piSIDT~~~~va~aAl~aGa-----~iINdvsg~~~d~~m~~~~a~---~~~~vVlmh~~G~p~tm~~ 141 (280)
T 1eye_A 72 VVKELAAQGI--TVSIDTMRADVARAALQNGA-----QMVNDVSGGRADPAMGPLLAE---ADVPWVLMHWRAVSADTPH 141 (280)
T ss_dssp HHHHHHHTTC--CEEEECSCHHHHHHHHHTTC-----CEEEETTTTSSCTTHHHHHHH---HTCCEEEECCCCSCTTCTT
T ss_pred HHHHhhcCCC--EEEEeCCCHHHHHHHHHcCC-----CEEEECCCCCCCHHHHHHHHH---hCCeEEEEcCCCCCcchhh
Confidence 4445544443 26888888888999999882 455433 32 36777777665 4454332111
Q ss_pred ------C-----HHHHHHHHHHHHhcCCCc-eEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHH
Q 005135 245 ------Q-----EEEVDLVIEISKKLNVRP-VIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEV 305 (712)
Q Consensus 245 ------s-----~~EL~~I~~~a~~~g~~~-~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~ 305 (712)
+ .++|....+.+.+.|+++ +|- +.|. -.||=+.++-.++++.+++
T Consensus 142 ~~~~y~dv~~~v~~~l~~~i~~a~~~Gi~~~~Ii--lDPg--------------~Gf~k~~~~n~~ll~~l~~ 198 (280)
T 1eye_A 142 VPVRYGNVVAEVRADLLASVADAVAAGVDPARLV--LDPG--------------LGFAKTAQHNWAILHALPE 198 (280)
T ss_dssp SCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEE--EECC--------------TTSSCCHHHHHHHHHTHHH
T ss_pred cCcchhHHHHHHHHHHHHHHHHHHHcCCChhhEE--EECC--------------CCcccCHHHHHHHHHHHHH
Confidence 1 677777888888888764 333 3332 2266677776676666654
No 105
>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*
Probab=22.26 E-value=6.3e+02 Score=26.13 Aligned_cols=131 Identities=15% Similarity=0.095 Sum_probs=79.4
Q ss_pred HHHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHH
Q 005135 223 AGYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKK 302 (712)
Q Consensus 223 ~e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~ 302 (712)
.+.++.|.+. ..++. -+|+-|++.++-+.+.|++.+. .|-|-+.+.. .|| .....+..+++.
T Consensus 6 ~~ll~~A~~~-~yAV~-AfNv~n~e~~~Ail~AAee~~s--PvIlq~s~g~-------------~~y-~g~~~~~~~v~~ 67 (305)
T 1rvg_A 6 LEILKKAREE-GYGVG-AFNVNNMEFLQAVLEAAEEQRS--PVILALSEGA-------------MKY-GGRALTLMAVEL 67 (305)
T ss_dssp HHHHHHHHHH-TCCEE-EEECCSHHHHHHHHHHHHHTTC--CEEEEEEHHH-------------HHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCEEE-EEeeCCHHHHHHHHHHHHHhCC--CEEEECChhH-------------Hhh-CCHHHHHHHHHH
Confidence 5667777664 35565 6899999999999999998764 4556664321 122 123445566666
Q ss_pred HHHcCCCCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEEEcCCCCcCcCCCCCCCCCCCcCCCHHHH
Q 005135 303 LEVAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVIDIGGGLGIDYDGSKSADSDLSVAYTLEEY 382 (712)
Q Consensus 303 l~~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~IDIGGGlgv~Y~~s~~~~~~~s~~ysleey 382 (712)
+.+ -.+ -+-||.--|. +.+.+++++ +.|+.- |.+|+|. ++++|=
T Consensus 68 ~a~-~~V--PValHlDHg~---~~e~~~~ai-----------~~GFtS----------VMiDgS~---------~p~eEN 111 (305)
T 1rvg_A 68 AKE-ARV--PVAVHLDHGS---SYESVLRAL-----------RAGFTS----------VMIDKSH---------EDFETN 111 (305)
T ss_dssp HHH-CSS--CEEEEEEEEC---SHHHHHHHH-----------HTTCSE----------EEECCTT---------SCHHHH
T ss_pred HHh-CCC--cEEEECCCCC---CHHHHHHHH-----------HcCCCe----------eeeCCCC---------CCHHHH
Confidence 655 333 3578876664 444333322 345542 3444442 567766
Q ss_pred HHHHHHHHHHHHHhcCCCCCeEEecCcch
Q 005135 383 ASAVVQAIRYVCDRKNVKHPVLCSESGRA 411 (712)
Q Consensus 383 a~~Iv~~l~~~~~~~gv~~p~Li~EPGRa 411 (712)
.+...+ +-++|...|+ .+-.|.|+-
T Consensus 112 i~~Tk~-vv~~ah~~gv---sVEaELG~v 136 (305)
T 1rvg_A 112 VRETRR-VVEAAHAVGV---TVEAELGRL 136 (305)
T ss_dssp HHHHHH-HHHHHHHTTC---EEEEEESCC
T ss_pred HHHHHH-HHHHHHHcCC---EEEEEEeec
Confidence 554444 4457777787 799999986
No 106
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=21.65 E-value=1.9e+02 Score=29.52 Aligned_cols=105 Identities=19% Similarity=0.139 Sum_probs=55.9
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHH-hccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCC
Q 005135 195 SKPELLLAMSCLCKGSPEALLVCNGFKDAGYITLALL-ARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRT 273 (712)
Q Consensus 195 S~~EL~~Al~~G~~~~p~~II~~ng~K~~e~I~~Al~-~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~ 273 (712)
+...+..|+.+|. +.|++....-+.+.++..+. +..+|..+++-+.+.+|+++.. +.|. .-||+ |..
T Consensus 131 d~~qi~ea~~~GA----D~VlLi~a~L~~~~l~~l~~~a~~lGl~~lvevh~~eEl~~A~----~~ga-~iIGi--nnr- 198 (272)
T 3tsm_A 131 DPYQVYEARSWGA----DCILIIMASVDDDLAKELEDTAFALGMDALIEVHDEAEMERAL----KLSS-RLLGV--NNR- 198 (272)
T ss_dssp STHHHHHHHHTTC----SEEEEETTTSCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHT----TSCC-SEEEE--ECB-
T ss_pred CHHHHHHHHHcCC----CEEEEcccccCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHH----hcCC-CEEEE--CCC-
Confidence 3445566666662 45555444444444444332 3446777777778887776643 2332 23443 321
Q ss_pred CCCCCccccCCCCCCCCCCHHHHHHHHHHHHHcCCCCceeEEEEecCCCCCChHHHH
Q 005135 274 KHSGHFGSTSGEKGKFGLTTTQILRVVKKLEVAEMLDCFQLLHFHIGSQIPSTALLT 330 (712)
Q Consensus 274 ~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~~~~L~~l~GLHfHiGSqi~d~~~~~ 330 (712)
.-..|+++.+...++++.+.. + +.-+ ..|.|.++++.+
T Consensus 199 -----------~l~t~~~dl~~~~~L~~~ip~----~-~~vI---aesGI~t~edv~ 236 (272)
T 3tsm_A 199 -----------NLRSFEVNLAVSERLAKMAPS----D-RLLV---GESGIFTHEDCL 236 (272)
T ss_dssp -----------CTTTCCBCTHHHHHHHHHSCT----T-SEEE---EESSCCSHHHHH
T ss_pred -----------CCccCCCChHHHHHHHHhCCC----C-CcEE---EECCCCCHHHHH
Confidence 124578887776666655431 1 1112 467788887544
No 107
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...
Probab=21.42 E-value=6.7e+02 Score=25.70 Aligned_cols=104 Identities=16% Similarity=0.142 Sum_probs=63.7
Q ss_pred HHHHHHHc-CCCCccceEecCHHHHHHHHHhcCCCCCCcEEEeC-CC-CCHHHHHHHHHhccCCCcEEEEEC--------
Q 005135 176 VVEDIVKF-GSQFRFGLEAGSKPELLLAMSCLCKGSPEALLVCN-GF-KDAGYITLALLARKLDLNVVIVLE-------- 244 (712)
Q Consensus 176 Vl~~l~~~-G~~~~~GlEvaS~~EL~~Al~~G~~~~p~~II~~n-g~-K~~e~I~~Al~~~~~G~~v~IvVD-------- 244 (712)
+++.+.+. +.. +.+|.....-++.|+++|. .||..- +. .+++.++.+.+ .|..+++.--
T Consensus 106 vI~~l~~~~~vp--iSIDT~~~~V~~aAl~aGa-----~iINdvsg~~~d~~m~~~aa~---~g~~vVlmh~~G~p~y~d 175 (297)
T 1tx2_A 106 MIQAVSKEVKLP--ISIDTYKAEVAKQAIEAGA-----HIINDIWGAKAEPKIAEVAAH---YDVPIILMHNRDNMNYRN 175 (297)
T ss_dssp HHHHHHHHSCSC--EEEECSCHHHHHHHHHHTC-----CEEEETTTTSSCTHHHHHHHH---HTCCEEEECCCSCCCCSS
T ss_pred HHHHHHhcCCce--EEEeCCCHHHHHHHHHcCC-----CEEEECCCCCCCHHHHHHHHH---hCCcEEEEeCCCCCCcch
Confidence 34555543 433 6889999999999999982 455433 33 36666676655 4555333221
Q ss_pred ----CHHHHHHHHHHHHhcCCCc-eEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHH
Q 005135 245 ----QEEEVDLVIEISKKLNVRP-VIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLEV 305 (712)
Q Consensus 245 ----s~~EL~~I~~~a~~~g~~~-~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~~ 305 (712)
-.+.|+...+.+.+.|+++ +|.| .|. --||-+.++-.++++.+++
T Consensus 176 ~v~ev~~~l~~~i~~a~~~GI~~~~Iil--DPg--------------~Gfgk~~~~n~~ll~~l~~ 225 (297)
T 1tx2_A 176 LMADMIADLYDSIKIAKDAGVRDENIIL--DPG--------------IGFAKTPEQNLEAMRNLEQ 225 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCGGGEEE--ECC--------------TTSSCCHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHHHHHHcCCChhcEEE--eCC--------------CCcCCCHHHHHHHHHHHHH
Confidence 1577777888888888764 4443 232 2366677766666666654
No 108
>1w32_A Endo-1,4-beta-xylanase A precursor; mutant, calcium ION, thermostable, glycosyle hydrolase, family 10, error prone PCR, hydrolase; 1.2A {Cellvibrio japonicus} SCOP: c.1.8.3 PDB: 1w2p_A 1w2v_A 1w3h_A 1clx_A 1e5n_A* 1xys_A
Probab=21.16 E-value=1e+02 Score=32.57 Aligned_cols=57 Identities=18% Similarity=0.275 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHcCC-CCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHH--HcCCC--CcEEEEcCC
Q 005135 294 TQILRVVKKLEVAEM-LDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELV--RLGAN--MQVIDIGGG 358 (712)
Q Consensus 294 ~e~~~~l~~l~~~~~-L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~--~~G~~--l~~IDIGGG 358 (712)
+.+.++++.+++.|. ++ -+|++.|++...++++.++++++ .+. .+|.+ ++.+||...
T Consensus 192 ~~~~~~v~~l~~~G~~iD-giG~Q~H~~~~~p~~~~~~~~l~-------~~a~~~~Gl~i~ITElDv~~~ 253 (348)
T 1w32_A 192 TALVNLVQRLLNNGVPID-GVGFQMHVMNDYPSIANIRQAMQ-------KIVALSPTLKIKITELDVRLN 253 (348)
T ss_dssp HHHHHHHHHHHHTTCCCC-EEEECCEEESSSSCHHHHHHHHH-------HHHTTCSSCEEEEEEEEEESC
T ss_pred HHHHHHHHHHHHCCCccc-EEEeccccCCCCCCHHHHHHHHH-------HHhcccCCCeEEEEeCcccCC
Confidence 457788888888885 67 67998888765566665544433 345 56754 567888764
No 109
>1ur1_A Endoxylanase; hydrolase, family 10, glycoside hydrolase, hemicellulose, xylan degradation; HET: XYS AHR; 1.43A {Cellvibrio mixtus} SCOP: c.1.8.3 PDB: 1uqy_A* 1uqz_A* 1ur2_A* 2cnc_A*
Probab=21.07 E-value=83 Score=33.70 Aligned_cols=57 Identities=16% Similarity=0.311 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHcCC-CCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCCC--CcEEEEcC
Q 005135 293 TTQILRVVKKLEVAEM-LDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGAN--MQVIDIGG 357 (712)
Q Consensus 293 ~~e~~~~l~~l~~~~~-L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~--l~~IDIGG 357 (712)
...+.++++.+++.|. ++ ..|++.|++...++++.+++++++ +.++|.+ +..+||..
T Consensus 208 ~~~~~~~v~~l~~~g~~iD-giG~Q~H~~~~~p~~~~i~~~l~~-------~a~~Gl~i~iTElDi~~ 267 (378)
T 1ur1_A 208 REATVEMIERLQKRGMPIH-GLGIQGHLGIDTPPIAEIEKSIIA-------FAKLGLRVHFTSLDVDV 267 (378)
T ss_dssp HHHHHHHHHHHHHTTCCCC-EEEECCEEESSCSCHHHHHHHHHH-------HHTTTCEEEEEEEEEEC
T ss_pred hHHHHHHHHHHHHCCCCcc-eEEecCcCCCCCCCHHHHHHHHHH-------HHhcCCeEEEEecccCC
Confidence 4566788998988875 67 789988987655676655544443 3456764 56688875
No 110
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=21.05 E-value=6.5e+02 Score=25.38 Aligned_cols=143 Identities=14% Similarity=0.137 Sum_probs=74.6
Q ss_pred CCcHHHHHHHHHcCCCCccceEecC-------H--HHHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhccCCCcEEE
Q 005135 171 NQDRFVVEDIVKFGSQFRFGLEAGS-------K--PELLLAMSCLCKGSPEALLVCNGFKDAGYITLALLARKLDLNVVI 241 (712)
Q Consensus 171 N~~~~Vl~~l~~~G~~~~~GlEvaS-------~--~EL~~Al~~G~~~~p~~II~~ng~K~~e~I~~Al~~~~~G~~v~I 241 (712)
.....+++.|.+.|.. -+|++| + .+...+++.-...+.-++.... -..+.++.|+++ |+..+-
T Consensus 27 e~k~~i~~~L~~~Gv~---~IE~g~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~l~--~~~~~i~~a~~a---g~~~v~ 98 (298)
T 2cw6_A 27 PVKIKLIDMLSEAGLS---VIETTSFVSPKWVPQMGDHTEVLKGIQKFPGINYPVLT--PNLKGFEAAVAA---GAKEVV 98 (298)
T ss_dssp HHHHHHHHHHHHTTCS---EECCEECCCTTTCGGGTTHHHHHHHSCCCTTCBCCEEC--CSHHHHHHHHHT---TCSEEE
T ss_pred HHHHHHHHHHHHcCcC---EEEECCCcCcccccccCCHHHHHHHHhhCCCCEEEEEc--CCHHhHHHHHHC---CCCEEE
Confidence 3345778888888863 355554 1 1222233221111112221112 246789999875 455444
Q ss_pred EECCHH-----------------HHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHH
Q 005135 242 VLEQEE-----------------EVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKLE 304 (712)
Q Consensus 242 vVDs~~-----------------EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l~ 304 (712)
++.+.+ .+....+.+++.|.. +++++...-+ ....++ .+++.+.++++.+.
T Consensus 99 i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~~----v~~~l~~~~~------~~~~~~--~~~~~~~~~~~~~~ 166 (298)
T 2cw6_A 99 IFGAASELFTKKNINCSIEESFQRFDAILKAAQSANIS----VRGYVSCALG------CPYEGK--ISPAKVAEVTKKFY 166 (298)
T ss_dssp EEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTCE----EEEEEETTTC------BTTTBS--CCHHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe----EEEEEEEEee------CCcCCC--CCHHHHHHHHHHHH
Confidence 454443 344556667777654 4444432110 001122 47889999999999
Q ss_pred HcCCCCceeEEEEecCCCCCChHHHHHHHHHHH
Q 005135 305 VAEMLDCFQLLHFHIGSQIPSTALLTDGVGEAA 337 (712)
Q Consensus 305 ~~~~L~~l~GLHfHiGSqi~d~~~~~~ai~~~~ 337 (712)
+.|. + ...|-=-+| ..++..+.+.++.+.
T Consensus 167 ~~Ga-~-~i~l~DT~G--~~~P~~~~~lv~~l~ 195 (298)
T 2cw6_A 167 SMGC-Y-EISLGDTIG--VGTPGIMKDMLSAVM 195 (298)
T ss_dssp HTTC-S-EEEEEETTS--CCCHHHHHHHHHHHH
T ss_pred HcCC-C-EEEecCCCC--CcCHHHHHHHHHHHH
Confidence 9985 4 223333344 567876655555443
No 111
>3emz_A Xylanase, endo-1,4-beta-xylanase; (alpha/beta)8 barrel, GH10 enzyme complex, hydrolase; HET: HXH; 2.08A {Bacillus SP} SCOP: c.1.8.3 PDB: 3emq_A* 3emc_A*
Probab=20.73 E-value=76 Score=33.41 Aligned_cols=57 Identities=14% Similarity=0.115 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHcCC-CCceeEEEEecCCCCCChHHHHHHHHHHHHHHHHHHHcCC--CCcEEEEcCC
Q 005135 294 TQILRVVKKLEVAEM-LDCFQLLHFHIGSQIPSTALLTDGVGEAAQIYCELVRLGA--NMQVIDIGGG 358 (712)
Q Consensus 294 ~e~~~~l~~l~~~~~-L~~l~GLHfHiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~--~l~~IDIGGG 358 (712)
..+.++++.+++.|. ++ -+|++.|++...+++..++++++ .+.++|. .++.|||...
T Consensus 187 ~~~~~~v~~l~~~Gvpid-giG~Q~H~~~~~p~~~~~~~~l~-------~~a~lGl~v~iTElDi~~~ 246 (331)
T 3emz_A 187 EKIYNLVRSLLDQGAPVH-GIGMQGHWNIHGPSMDEIRQAIE-------RYASLDVQLHVTELDLSVF 246 (331)
T ss_dssp HHHHHHHHHHHHHTCCCC-EEEECCEEETTBSCHHHHHHHHH-------HHHTTSCEEEEEEEEEESS
T ss_pred HHHHHHHHHHHHCCCccc-eEEECceecCCCCCHHHHHHHHH-------HHHHcCCcEEEeecccCCc
Confidence 456788899988886 77 57999998776566654444443 3455675 5678999754
No 112
>2fiq_A Putative tagatose 6-phosphate kinase 1; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics; 2.25A {Escherichia coli} SCOP: c.1.10.7
Probab=20.06 E-value=3.5e+02 Score=29.46 Aligned_cols=119 Identities=11% Similarity=0.111 Sum_probs=69.2
Q ss_pred HHHHHHHHhccCCCcEEEEECCHHHHHHHHHHHHhcCCCceEEEEEeeCCCCCCCccccCCCCCCCCCCHHHHHHHHHHH
Q 005135 224 GYITLALLARKLDLNVVIVLEQEEEVDLVIEISKKLNVRPVIGARAKLRTKHSGHFGSTSGEKGKFGLTTTQILRVVKKL 303 (712)
Q Consensus 224 e~I~~Al~~~~~G~~v~IvVDs~~EL~~I~~~a~~~g~~~~IgLRVn~~~~~~~~~~~tgg~~SKFGl~~~e~~~~l~~l 303 (712)
+.|+.+..+...|+. -+++-|++-++.+.+.|++.+ ..|.|-+..+... ..|| -.|+++..+...+..+
T Consensus 3 ~ll~~~~~~~a~av~-afn~~n~e~i~Ail~aAee~~--sPVIi~~s~~~v~-----~~gG---Y~g~~~~~~~~~v~~~ 71 (420)
T 2fiq_A 3 TLIARHKAGEHIGIC-SVCSAHPLVIEAALAFDRNST--RKVLIEATSNQVN-----QFGG---YTGMTPADFREFVFAI 71 (420)
T ss_dssp HHHHHHHTTCCBCEE-EECCCCHHHHHHHHHHTTTSC--CCEEEEEETTTBS-----TTCT---TTTBCHHHHHHHHHHH
T ss_pred HHHHHHHcCCceEEE-EeccCCHHHHHHHHHHHHHcC--CCEEEEcChhhhh-----hccC---CCCCCHHHHHHHHHHH
Confidence 344444433223433 466789999999999998876 3556666543210 0011 2377788888877766
Q ss_pred HH-cCCCC-ceeEEEE-ecCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCcEEE
Q 005135 304 EV-AEMLD-CFQLLHF-HIGSQIPSTALLTDGVGEAAQIYCELVRLGANMQVID 354 (712)
Q Consensus 304 ~~-~~~L~-~l~GLHf-HiGSqi~d~~~~~~ai~~~~~~~~~L~~~G~~l~~ID 354 (712)
.+ .+. . ..+-||. |.++....-..-.+++..+.+.+.+..+.|+.-=.||
T Consensus 72 A~~~~v-P~~~VaLHlDHg~~~~w~~~~~~~am~~a~e~i~~aI~aGFtSVMiD 124 (420)
T 2fiq_A 72 ADKVGF-ARERIILGGDHLGPNCWQQENVDAAMEKSVELVKAYVRAGFSKIHLD 124 (420)
T ss_dssp HHHHTC-CGGGEEEEEEEESSGGGTTSBHHHHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHcCc-CcceEEEECCCCCCccccccchhhhhhhHHHHHHHHHHhCCCEEEEC
Confidence 44 333 2 0156776 5555311112234678888888877778887654454
Done!