BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005136
(712 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 17/113 (15%)
Query: 567 LVDKGLKYFNSMEPIYNIKPNGRHYTC--VVDMLSRSGRLSEAEDFINSM--PFEPDSNA 622
+VD+ + FNS +P + P + C VVD ++ +++ + + + F PDSN
Sbjct: 575 IVDREIATFNSTKPTV-LGPKNPQFDCCFVVDENAKPSQINTLNNELTLIVKAFHPDSNI 633
Query: 623 WASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMN 675
+LS TY+ + + AGY GR+IDA+N
Sbjct: 634 TLEVLSTEPTYQ------------FYTGDFLSAGYEARQGFAIEPGRYIDAIN 674
>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZ5|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 514 DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLK 573
DK + + TV V+ L + K+ +L EME + I+++L AC+ G + ++
Sbjct: 62 DKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIITLLGACTQDGPLYVIVE 121
Query: 574 YF---NSMEPIYNIKPNGRHYT 592
Y N E + +P G Y+
Sbjct: 122 YASKGNLREYLRARRPPGMEYS 143
>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain
pdb|1OEC|A Chain A, Fgfr2 Kinase Domain
Length = 316
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 514 DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLK 573
DK + + TV V+ L + K+ +L EME + I+++L AC+ G + ++
Sbjct: 54 DKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVE 113
Query: 574 YF---NSMEPIYNIKPNGRHYT 592
Y N E + +P G Y+
Sbjct: 114 YASKGNLREYLRARRPPGMEYS 135
>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains
Trapped In Trans-Phosphorylation Reaction
Length = 334
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 514 DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLK 573
DK + + TV V+ L + K+ +L EME + I+++L AC+ G + ++
Sbjct: 62 DKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVE 121
Query: 574 YF---NSMEPIYNIKPNGRHYT 592
Y N E + +P G Y+
Sbjct: 122 YASKGNLREYLRARRPPGMEYS 143
>pdb|2PZR|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZR|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 514 DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLK 573
DK + + TV V+ L + K+ +L EME + I+++L AC+ G + ++
Sbjct: 62 DKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVE 121
Query: 574 YF---NSMEPIYNIKPNGRHYT 592
Y N E + +P G Y+
Sbjct: 122 YASKGNLREYLRARRPPGMEYS 143
>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|C Chain C, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|D Chain D, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome
Length = 324
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 514 DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLK 573
DK + + TV V+ L + K+ +L EME + I+++L AC+ G + ++
Sbjct: 62 DKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVE 121
Query: 574 YF---NSMEPIYNIKPNGRHYT 592
Y N E + +P G Y+
Sbjct: 122 YASKGNLREYLRARRPPGMEYS 143
>pdb|4EGQ|A Chain A, Crystal Structure Of D-Alanine-D-Alanine Ligase B From
Burkholderia Pseudomallei
pdb|4EGQ|B Chain B, Crystal Structure Of D-Alanine-D-Alanine Ligase B From
Burkholderia Pseudomallei
pdb|4EGQ|C Chain C, Crystal Structure Of D-Alanine-D-Alanine Ligase B From
Burkholderia Pseudomallei
pdb|4EGQ|D Chain D, Crystal Structure Of D-Alanine-D-Alanine Ligase B From
Burkholderia Pseudomallei
Length = 316
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 380 KDVAHVVSWNSMIGGYGLNGQMEEAKELF 408
KD V ++N++ GGYG NGQ++ A + +
Sbjct: 62 KDEGFVRAFNALHGGYGENGQIQGALDFY 90
>pdb|3B2T|A Chain A, Structure Of Phosphotransferase
pdb|3B2T|B Chain B, Structure Of Phosphotransferase
Length = 311
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 514 DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLK 573
DK + + TV V+ L + K+ +L EME + I+++L AC+ G + ++
Sbjct: 49 DKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVE 108
Query: 574 YF---NSMEPIYNIKPNGRHYT 592
Y N E + +P G Y+
Sbjct: 109 YASKGNLREYLRARRPPGMEYS 130
>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
pdb|2PSQ|B Chain B, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
Length = 370
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 514 DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLK 573
DK + + TV V+ L + K+ +L EME + I+++L AC+ G + ++
Sbjct: 108 DKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVE 167
Query: 574 YF---NSMEPIYNIKPNGRHYT 592
Y N E + +P G Y+
Sbjct: 168 YASKGNLREYLRARRPPGMEYS 189
>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase
In Complex With Arq 069
pdb|3RI1|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase
In Complex With Arq 069
Length = 313
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 514 DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLK 573
DK + + TV V+ L + K+ +L EME + I+++L AC+ G + ++
Sbjct: 51 DKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVE 110
Query: 574 YF---NSMEPIYNIKPNGRHYT 592
Y N E + +P G Y+
Sbjct: 111 YASKGNLREYLRARRPPGMEYS 132
>pdb|4EG0|A Chain A, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Burkholderia Ambifaria
pdb|4EG0|B Chain B, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Burkholderia Ambifaria
Length = 317
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 380 KDVAHVVSWNSMIGGYGLNGQMEEAKELF 408
KD V ++N++ GGYG NGQ++ A + +
Sbjct: 62 KDEGFVRAFNALHGGYGENGQIQGALDFY 90
>pdb|2BII|A Chain A, Crystal Structure Of Nitrate-Reducing Fragment Of
Assimilatory Nitrate Reductase From Pichia Angusta
pdb|2BII|B Chain B, Crystal Structure Of Nitrate-Reducing Fragment Of
Assimilatory Nitrate Reductase From Pichia Angusta
Length = 424
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 512 MPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKG 571
+PD+N + W V + G+ E+ Y I L + ME+ I +T++ +V KG
Sbjct: 37 VPDENILDWEVSIEGMVETPY---KIKLSDIMEQFDIYSTPVTMVCAGNRRKEQNMVKKG 93
Query: 572 LKY 574
+
Sbjct: 94 AGF 96
>pdb|2BIH|A Chain A, Crystal Structure Of The Molybdenum-containing Nitrate
Reducing Fragment Of Pichia Angusta Assimilatory Nitrate
Reductase
Length = 474
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 512 MPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKG 571
+PD+N + W V + G+ E+ Y I L + ME+ I +T++ +V KG
Sbjct: 87 VPDENILDWEVSIEGMVETPY---KIKLSDIMEQFDIYSTPVTMVCAGNRRKEQNMVKKG 143
Query: 572 LKY 574
+
Sbjct: 144 AGF 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,529,607
Number of Sequences: 62578
Number of extensions: 820179
Number of successful extensions: 1788
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1784
Number of HSP's gapped (non-prelim): 17
length of query: 712
length of database: 14,973,337
effective HSP length: 106
effective length of query: 606
effective length of database: 8,340,069
effective search space: 5054081814
effective search space used: 5054081814
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)