Query 005136
Match_columns 712
No_of_seqs 663 out of 3997
Neff 11.6
Searched_HMMs 46136
Date Thu Mar 28 18:38:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005136.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005136hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 7.5E-92 1.6E-96 778.7 71.5 670 2-712 68-749 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 7.7E-72 1.7E-76 619.0 62.3 618 51-685 46-688 (857)
3 PLN03081 pentatricopeptide (PP 100.0 3.4E-71 7.3E-76 599.0 59.6 502 146-712 84-586 (697)
4 PLN03218 maturation of RBCL 1; 100.0 2.7E-64 5.8E-69 545.2 57.0 525 54-620 368-915 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 2E-61 4.2E-66 523.0 59.7 533 85-690 368-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 8.5E-60 1.8E-64 510.2 51.4 466 53-586 84-561 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 7.5E-41 1.6E-45 382.9 70.5 670 2-686 142-869 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 6.8E-41 1.5E-45 383.2 69.3 667 2-682 176-899 (899)
9 PRK11447 cellulose synthase su 100.0 2.5E-28 5.4E-33 278.0 64.5 631 23-682 30-739 (1157)
10 PRK11447 cellulose synthase su 100.0 1E-26 2.3E-31 264.7 58.0 629 2-656 45-750 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 1.4E-25 3E-30 242.9 59.1 619 33-685 56-742 (987)
12 PRK09782 bacteriophage N4 rece 100.0 8.7E-24 1.9E-28 229.1 60.2 590 64-685 52-708 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 6E-23 1.3E-27 196.6 35.6 439 222-672 51-508 (966)
14 KOG2002 TPR-containing nuclear 99.9 4E-21 8.8E-26 194.2 47.4 516 160-685 175-747 (1018)
15 KOG2002 TPR-containing nuclear 99.9 4.7E-20 1E-24 186.6 43.3 552 37-614 146-742 (1018)
16 KOG4626 O-linked N-acetylgluco 99.9 3.1E-21 6.7E-26 185.0 29.8 422 253-684 51-486 (966)
17 TIGR00990 3a0801s09 mitochondr 99.9 1.6E-19 3.5E-24 193.4 42.9 413 257-683 134-571 (615)
18 PRK11788 tetratricopeptide rep 99.9 2.5E-19 5.4E-24 182.6 27.2 301 359-692 43-356 (389)
19 PRK10049 pgaA outer membrane p 99.9 1.5E-17 3.3E-22 181.4 42.1 364 284-684 52-457 (765)
20 TIGR00990 3a0801s09 mitochondr 99.9 2.3E-17 5.1E-22 176.8 42.9 417 153-614 131-568 (615)
21 PRK15174 Vi polysaccharide exp 99.9 5.7E-18 1.2E-22 180.5 37.6 332 283-654 44-386 (656)
22 PRK14574 hmsH outer membrane p 99.8 1.4E-16 3E-21 169.9 43.3 421 231-657 46-521 (822)
23 KOG2076 RNA polymerase III tra 99.8 1.6E-15 3.5E-20 153.2 47.2 586 98-687 150-853 (895)
24 PRK15174 Vi polysaccharide exp 99.8 2E-17 4.3E-22 176.4 35.8 326 321-686 47-384 (656)
25 PRK11788 tetratricopeptide rep 99.8 3.6E-18 7.7E-23 174.1 28.4 287 289-579 43-345 (389)
26 KOG2076 RNA polymerase III tra 99.8 8.8E-15 1.9E-19 148.0 50.2 646 17-679 135-891 (895)
27 KOG4318 Bicoid mRNA stability 99.8 1.3E-16 2.9E-21 159.9 36.5 643 7-685 12-810 (1088)
28 KOG0495 HAT repeat protein [RN 99.8 6.9E-14 1.5E-18 136.0 51.5 615 35-698 265-893 (913)
29 PRK10049 pgaA outer membrane p 99.8 2.7E-16 5.8E-21 171.6 39.3 209 426-658 247-465 (765)
30 KOG4318 Bicoid mRNA stability 99.8 4E-17 8.7E-22 163.5 27.5 609 35-678 4-763 (1088)
31 PRK14574 hmsH outer membrane p 99.8 8E-15 1.7E-19 156.6 44.4 438 158-625 43-522 (822)
32 KOG4422 Uncharacterized conser 99.8 1.8E-14 4E-19 132.9 34.3 430 20-481 115-591 (625)
33 KOG0495 HAT repeat protein [RN 99.7 5.4E-12 1.2E-16 123.2 52.0 511 106-663 365-894 (913)
34 KOG2003 TPR repeat-containing 99.7 8.8E-16 1.9E-20 142.4 24.6 472 154-680 206-719 (840)
35 KOG4422 Uncharacterized conser 99.7 2E-13 4.4E-18 126.2 34.8 435 149-614 116-587 (625)
36 KOG1915 Cell cycle control pro 99.6 9.4E-12 2E-16 116.9 37.8 425 198-629 87-549 (677)
37 PF13429 TPR_15: Tetratricopep 99.6 5.3E-16 1.1E-20 149.2 10.1 256 422-682 14-276 (280)
38 KOG0547 Translocase of outer m 99.6 1E-12 2.2E-17 123.9 31.0 215 462-681 337-564 (606)
39 KOG1155 Anaphase-promoting com 99.6 8.3E-13 1.8E-17 123.6 29.9 320 249-613 163-491 (559)
40 KOG1915 Cell cycle control pro 99.6 9.5E-11 2.1E-15 110.3 42.6 436 118-597 73-549 (677)
41 KOG1155 Anaphase-promoting com 99.6 3.9E-12 8.4E-17 119.2 32.3 330 345-682 158-494 (559)
42 KOG1126 DNA-binding cell divis 99.6 2.3E-13 5E-18 133.6 21.6 283 331-686 334-623 (638)
43 KOG2003 TPR repeat-containing 99.6 9.6E-12 2.1E-16 116.0 31.0 256 424-684 427-690 (840)
44 PRK10747 putative protoheme IX 99.6 4.2E-12 9.1E-17 127.8 29.5 215 426-648 163-389 (398)
45 TIGR00540 hemY_coli hemY prote 99.6 6.7E-12 1.5E-16 127.1 29.9 122 423-545 160-291 (409)
46 KOG1173 Anaphase-promoting com 99.5 6.9E-11 1.5E-15 114.0 34.0 276 348-658 241-527 (611)
47 PRK10747 putative protoheme IX 99.5 6.9E-12 1.5E-16 126.2 28.3 281 294-614 97-387 (398)
48 KOG2047 mRNA splicing factor [ 99.5 1.1E-08 2.3E-13 100.6 45.5 141 466-611 565-717 (835)
49 KOG1126 DNA-binding cell divis 99.5 1.6E-12 3.4E-17 127.9 19.5 247 431-683 334-586 (638)
50 COG3071 HemY Uncharacterized e 99.5 7.9E-11 1.7E-15 109.0 29.2 290 294-649 97-390 (400)
51 KOG3785 Uncharacterized conser 99.5 7.7E-10 1.7E-14 100.4 34.4 448 159-652 32-493 (557)
52 KOG3616 Selective LIM binding 99.5 1.2E-09 2.7E-14 108.3 38.8 474 61-614 620-1131(1636)
53 KOG2047 mRNA splicing factor [ 99.5 2.5E-08 5.4E-13 98.1 47.1 324 328-671 359-711 (835)
54 TIGR00540 hemY_coli hemY prote 99.5 2E-11 4.4E-16 123.6 27.7 288 293-648 96-398 (409)
55 KOG4162 Predicted calmodulin-b 99.5 4.4E-10 9.5E-15 112.6 35.8 491 161-684 239-784 (799)
56 KOG0547 Translocase of outer m 99.5 6.8E-11 1.5E-15 111.8 28.4 215 361-614 336-563 (606)
57 PF13429 TPR_15: Tetratricopep 99.5 7.9E-14 1.7E-18 134.1 8.3 250 156-410 15-273 (280)
58 KOG1173 Anaphase-promoting com 99.4 3.9E-10 8.4E-15 109.0 30.8 266 325-630 253-532 (611)
59 COG2956 Predicted N-acetylgluc 99.4 7.1E-11 1.5E-15 105.8 24.0 311 363-706 47-372 (389)
60 KOG1127 TPR repeat-containing 99.4 2.7E-09 5.9E-14 109.8 38.1 375 280-665 774-1191(1238)
61 KOG2376 Signal recognition par 99.4 2.2E-09 4.8E-14 104.4 34.0 452 191-677 19-514 (652)
62 KOG0985 Vesicle coat protein c 99.4 4E-08 8.8E-13 101.3 44.4 342 279-666 982-1325(1666)
63 COG2956 Predicted N-acetylgluc 99.4 2.1E-10 4.5E-15 102.9 23.5 265 293-562 47-325 (389)
64 KOG4162 Predicted calmodulin-b 99.4 1E-08 2.3E-13 103.0 37.5 442 116-655 321-789 (799)
65 KOG0985 Vesicle coat protein c 99.4 2.2E-07 4.8E-12 96.0 47.4 496 152-682 609-1248(1666)
66 KOG3616 Selective LIM binding 99.4 3.5E-07 7.5E-12 91.5 46.8 376 1-438 748-1127(1636)
67 KOG1174 Anaphase-promoting com 99.4 2.3E-08 4.9E-13 93.0 36.1 303 312-654 190-505 (564)
68 TIGR02521 type_IV_pilW type IV 99.4 6.5E-11 1.4E-15 111.5 20.9 198 485-683 30-232 (234)
69 COG3071 HemY Uncharacterized e 99.4 5.5E-10 1.2E-14 103.6 25.1 276 398-681 97-388 (400)
70 COG3063 PilF Tfp pilus assembl 99.4 4.8E-11 1E-15 102.0 16.1 161 520-685 38-204 (250)
71 KOG3785 Uncharacterized conser 99.3 1.5E-08 3.3E-13 92.2 31.3 442 28-480 29-490 (557)
72 KOG3617 WD40 and TPR repeat-co 99.3 7.3E-08 1.6E-12 97.3 37.0 244 31-309 738-995 (1416)
73 KOG1174 Anaphase-promoting com 99.3 2.2E-08 4.8E-13 93.1 30.7 265 414-686 230-503 (564)
74 KOG2376 Signal recognition par 99.3 1.5E-07 3.1E-12 92.1 37.4 454 62-579 18-518 (652)
75 KOG1129 TPR repeat-containing 99.3 1.9E-10 4.1E-15 103.1 15.4 227 453-685 225-460 (478)
76 KOG1127 TPR repeat-containing 99.3 6.1E-08 1.3E-12 100.2 34.6 142 368-511 800-948 (1238)
77 PF12569 NARP1: NMDA receptor- 99.3 5.8E-08 1.3E-12 98.7 34.7 144 300-446 130-292 (517)
78 KOG1840 Kinesin light chain [C 99.3 1.4E-09 3E-14 108.7 22.4 192 491-682 246-478 (508)
79 KOG1156 N-terminal acetyltrans 99.2 1.9E-07 4.2E-12 92.3 35.6 446 161-614 19-508 (700)
80 PRK12370 invasion protein regu 99.2 2.3E-09 5E-14 113.1 23.9 243 432-684 277-536 (553)
81 KOG1156 N-terminal acetyltrans 99.2 5.6E-07 1.2E-11 89.2 38.0 446 194-678 17-506 (700)
82 PF13041 PPR_2: PPR repeat fam 99.2 5.3E-11 1.2E-15 79.1 6.1 50 147-196 1-50 (50)
83 PRK11189 lipoprotein NlpI; Pro 99.2 1E-09 2.3E-14 105.5 17.6 188 489-685 67-267 (296)
84 KOG3617 WD40 and TPR repeat-co 99.2 5.4E-07 1.2E-11 91.3 36.0 259 115-411 723-993 (1416)
85 PRK12370 invasion protein regu 99.2 2.2E-09 4.8E-14 113.2 20.4 211 465-683 275-502 (553)
86 KOG1129 TPR repeat-containing 99.2 7.9E-10 1.7E-14 99.2 14.2 236 421-661 228-470 (478)
87 TIGR02521 type_IV_pilW type IV 99.1 9.4E-09 2E-13 96.7 21.3 198 417-650 32-233 (234)
88 PF13041 PPR_2: PPR repeat fam 99.1 1.7E-10 3.6E-15 76.7 6.4 50 414-463 1-50 (50)
89 KOG4340 Uncharacterized conser 99.1 2.3E-07 5E-12 82.6 27.5 387 284-682 13-442 (459)
90 KOG1840 Kinesin light chain [C 99.1 4.7E-08 1E-12 98.0 26.1 208 92-378 246-477 (508)
91 KOG0624 dsRNA-activated protei 99.1 8E-08 1.7E-12 87.2 24.4 200 351-553 38-257 (504)
92 COG3063 PilF Tfp pilus assembl 99.1 4E-08 8.8E-13 84.4 19.7 197 455-655 39-242 (250)
93 KOG4340 Uncharacterized conser 99.1 2E-07 4.3E-12 83.0 24.4 201 262-476 124-335 (459)
94 PRK11189 lipoprotein NlpI; Pro 99.0 8.5E-08 1.8E-12 92.4 23.0 228 433-668 43-285 (296)
95 KOG0548 Molecular co-chaperone 99.0 2.7E-07 5.8E-12 89.4 25.7 408 257-679 9-485 (539)
96 PF04733 Coatomer_E: Coatomer 99.0 3.7E-08 8E-13 93.1 19.8 155 494-655 110-271 (290)
97 KOG0548 Molecular co-chaperone 99.0 6.5E-07 1.4E-11 86.9 27.0 176 457-645 304-485 (539)
98 PF12569 NARP1: NMDA receptor- 99.0 3.8E-07 8.3E-12 92.8 26.5 307 324-682 12-333 (517)
99 PF04733 Coatomer_E: Coatomer 99.0 8.4E-09 1.8E-13 97.5 13.4 243 427-684 12-266 (290)
100 PRK10370 formate-dependent nit 98.9 6E-08 1.3E-12 86.5 15.8 150 524-688 23-178 (198)
101 KOG1125 TPR repeat-containing 98.9 3.6E-08 7.9E-13 96.1 15.3 214 463-682 297-526 (579)
102 cd05804 StaR_like StaR_like; a 98.9 3.5E-06 7.5E-11 84.8 30.0 195 490-684 118-337 (355)
103 TIGR03302 OM_YfiO outer membra 98.9 1.1E-07 2.4E-12 89.0 17.1 180 485-684 32-233 (235)
104 KOG2053 Mitochondrial inherita 98.8 0.00032 7E-09 73.0 38.9 157 520-681 439-606 (932)
105 PRK15359 type III secretion sy 98.8 1.4E-07 3E-12 79.6 12.1 94 591-684 27-122 (144)
106 PRK15359 type III secretion sy 98.7 1.7E-07 3.7E-12 79.0 12.0 122 538-666 14-138 (144)
107 KOG0624 dsRNA-activated protei 98.7 2E-05 4.3E-10 72.1 24.8 309 284-619 41-373 (504)
108 cd05804 StaR_like StaR_like; a 98.7 3.3E-05 7.1E-10 77.7 29.6 188 460-649 123-336 (355)
109 KOG1125 TPR repeat-containing 98.7 1.9E-06 4.1E-11 84.5 17.9 256 360-675 294-563 (579)
110 PRK04841 transcriptional regul 98.6 2.3E-05 5E-10 89.7 29.6 54 629-682 700-759 (903)
111 KOG1070 rRNA processing protei 98.6 2E-06 4.3E-11 92.5 18.4 201 483-687 1455-1667(1710)
112 KOG1914 mRNA cleavage and poly 98.6 0.00071 1.5E-08 66.4 33.8 128 16-145 15-164 (656)
113 PRK15363 pathogenicity island 98.6 6.8E-07 1.5E-11 73.5 10.6 97 587-683 34-132 (157)
114 TIGR02552 LcrH_SycD type III s 98.6 8.1E-07 1.7E-11 74.8 11.3 101 584-684 12-115 (135)
115 PRK04841 transcriptional regul 98.5 0.00044 9.4E-09 79.4 36.7 404 39-480 293-760 (903)
116 KOG3081 Vesicle coat complex C 98.5 4.1E-05 8.8E-10 67.9 21.1 155 493-654 115-276 (299)
117 PRK15179 Vi polysaccharide bio 98.5 4.5E-06 9.7E-11 88.6 18.5 128 552-682 86-216 (694)
118 KOG1128 Uncharacterized conser 98.5 7E-06 1.5E-10 82.8 18.3 218 448-684 395-617 (777)
119 COG5010 TadD Flp pilus assembl 98.5 6E-06 1.3E-10 73.1 15.8 158 516-678 66-226 (257)
120 PLN02789 farnesyltranstransfer 98.5 2.4E-05 5.2E-10 75.2 21.1 181 496-681 81-300 (320)
121 KOG1914 mRNA cleavage and poly 98.5 0.0016 3.4E-08 64.1 33.3 147 432-579 347-499 (656)
122 COG5010 TadD Flp pilus assembl 98.5 1.1E-05 2.3E-10 71.6 16.5 158 485-647 66-229 (257)
123 KOG1128 Uncharacterized conser 98.5 4.4E-06 9.5E-11 84.3 15.5 189 481-684 393-583 (777)
124 COG4783 Putative Zn-dependent 98.5 1.4E-05 3E-10 77.3 18.1 141 522-684 311-455 (484)
125 PRK14720 transcript cleavage f 98.5 5E-05 1.1E-09 81.6 24.2 167 351-545 31-197 (906)
126 PRK10370 formate-dependent nit 98.4 1.1E-05 2.5E-10 72.0 15.9 151 494-656 24-180 (198)
127 KOG3060 Uncharacterized conser 98.4 1.1E-05 2.5E-10 70.7 15.1 196 466-664 27-235 (289)
128 PLN02789 farnesyltranstransfer 98.4 1.8E-05 4E-10 76.1 18.1 186 496-686 47-253 (320)
129 COG4783 Putative Zn-dependent 98.4 0.00011 2.4E-09 71.2 22.4 118 561-681 315-435 (484)
130 TIGR03302 OM_YfiO outer membra 98.4 1.1E-05 2.3E-10 75.6 15.8 184 449-652 31-235 (235)
131 KOG1070 rRNA processing protei 98.4 7.6E-05 1.6E-09 81.0 22.1 203 216-450 1455-1668(1710)
132 KOG3081 Vesicle coat complex C 98.3 7.5E-05 1.6E-09 66.2 17.5 237 423-675 15-262 (299)
133 PRK15179 Vi polysaccharide bio 98.3 5.6E-05 1.2E-09 80.5 20.3 135 516-655 85-223 (694)
134 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 7.7E-06 1.7E-10 80.1 12.8 121 555-680 172-294 (395)
135 PF12854 PPR_1: PPR repeat 98.3 1.1E-06 2.4E-11 52.0 4.2 32 346-377 2-33 (34)
136 COG4235 Cytochrome c biogenesi 98.3 3.9E-06 8.5E-11 76.4 9.1 112 584-695 151-268 (287)
137 PF09976 TPR_21: Tetratricopep 98.3 2.1E-05 4.7E-10 66.7 13.0 115 565-680 24-144 (145)
138 PF12854 PPR_1: PPR repeat 98.3 1.4E-06 3.1E-11 51.6 3.9 32 214-245 2-33 (34)
139 PRK14720 transcript cleavage f 98.2 0.00044 9.5E-09 74.6 24.7 150 283-461 118-267 (906)
140 KOG3060 Uncharacterized conser 98.2 0.00017 3.8E-09 63.5 17.6 186 428-618 24-222 (289)
141 TIGR02552 LcrH_SycD type III s 98.2 2E-05 4.3E-10 66.3 12.0 112 539-655 5-120 (135)
142 KOG0553 TPR repeat-containing 98.2 8.4E-06 1.8E-10 73.7 9.6 92 527-623 91-185 (304)
143 PF07079 DUF1347: Protein of u 98.2 0.0067 1.4E-07 58.6 35.2 86 533-623 437-528 (549)
144 PF13414 TPR_11: TPR repeat; P 98.2 3.1E-06 6.8E-11 61.1 5.5 66 619-684 2-68 (69)
145 PF13432 TPR_16: Tetratricopep 98.2 2.8E-06 6E-11 60.4 5.2 60 626-685 3-62 (65)
146 TIGR02795 tol_pal_ybgF tol-pal 98.2 1.6E-05 3.5E-10 65.1 10.5 97 589-685 3-107 (119)
147 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 3.8E-05 8.3E-10 75.3 14.1 124 488-616 171-296 (395)
148 PF12895 Apc3: Anaphase-promot 98.2 1.9E-06 4.1E-11 65.1 3.8 78 601-679 2-83 (84)
149 PF07079 DUF1347: Protein of u 98.2 0.0083 1.8E-07 57.9 28.3 188 487-680 299-521 (549)
150 KOG2053 Mitochondrial inherita 98.1 0.02 4.4E-07 60.3 42.8 212 32-247 20-254 (932)
151 cd00189 TPR Tetratricopeptide 98.1 2.9E-05 6.2E-10 60.7 9.6 95 590-684 2-98 (100)
152 KOG2041 WD40 repeat protein [G 98.0 0.011 2.3E-07 60.2 27.5 206 53-282 689-910 (1189)
153 TIGR00756 PPR pentatricopeptid 98.0 1.4E-05 3E-10 48.4 4.5 33 151-183 2-34 (35)
154 PF13812 PPR_3: Pentatricopept 98.0 1.3E-05 2.8E-10 48.0 4.3 33 150-182 2-34 (34)
155 TIGR02795 tol_pal_ybgF tol-pal 98.0 7.7E-05 1.7E-09 61.1 10.3 105 554-658 4-114 (119)
156 PLN03088 SGT1, suppressor of 98.0 4.9E-05 1.1E-09 75.1 10.6 108 557-667 7-117 (356)
157 PF09976 TPR_21: Tetratricopep 98.0 0.00031 6.7E-09 59.6 14.0 121 523-647 18-145 (145)
158 PRK02603 photosystem I assembl 98.0 7.7E-05 1.7E-09 65.5 10.6 99 587-685 34-151 (172)
159 PF13371 TPR_9: Tetratricopept 97.9 2.4E-05 5.3E-10 57.2 5.8 59 628-686 3-61 (73)
160 PF14559 TPR_19: Tetratricopep 97.9 1.1E-05 2.3E-10 58.1 3.5 56 631-686 2-57 (68)
161 COG4700 Uncharacterized protei 97.9 0.00085 1.8E-08 56.1 14.7 149 529-682 68-221 (251)
162 PLN03088 SGT1, suppressor of 97.9 0.00013 2.8E-09 72.1 11.6 100 523-627 8-110 (356)
163 TIGR00756 PPR pentatricopeptid 97.9 2.6E-05 5.7E-10 47.1 4.3 33 283-315 2-34 (35)
164 KOG2280 Vacuolar assembly/sort 97.8 0.047 1E-06 56.4 28.6 338 309-679 425-795 (829)
165 CHL00033 ycf3 photosystem I as 97.8 0.00016 3.5E-09 63.3 10.5 93 587-679 34-138 (168)
166 KOG0553 TPR repeat-containing 97.8 4.7E-05 1E-09 69.0 7.0 110 559-671 88-200 (304)
167 PRK15331 chaperone protein Sic 97.8 0.00018 4E-09 59.7 9.7 100 583-682 31-133 (165)
168 PF13812 PPR_3: Pentatricopept 97.8 3.7E-05 8E-10 46.0 4.0 33 282-314 2-34 (34)
169 PF13432 TPR_16: Tetratricopep 97.7 9.4E-05 2E-09 52.5 6.1 61 594-654 3-65 (65)
170 KOG0550 Molecular chaperone (D 97.7 0.0034 7.3E-08 59.7 17.4 266 326-614 59-347 (486)
171 PRK15363 pathogenicity island 97.7 0.0016 3.5E-08 54.0 13.2 102 508-614 25-129 (157)
172 PF12895 Apc3: Anaphase-promot 97.7 0.00011 2.3E-09 55.4 5.7 80 530-613 2-83 (84)
173 PF14938 SNAP: Soluble NSF att 97.7 0.003 6.6E-08 60.5 16.8 168 419-614 38-222 (282)
174 PF13431 TPR_17: Tetratricopep 97.6 3.4E-05 7.3E-10 45.6 2.1 33 643-675 2-34 (34)
175 PRK10153 DNA-binding transcrip 97.6 0.0011 2.5E-08 68.5 14.6 66 619-685 419-484 (517)
176 KOG0550 Molecular chaperone (D 97.6 0.0007 1.5E-08 64.1 11.7 279 359-663 57-363 (486)
177 PRK10153 DNA-binding transcrip 97.6 0.0022 4.7E-08 66.4 16.1 140 514-655 334-488 (517)
178 PRK02603 photosystem I assembl 97.6 0.0012 2.6E-08 57.9 12.3 127 518-668 36-165 (172)
179 COG3898 Uncharacterized membra 97.6 0.08 1.7E-06 50.4 25.0 211 462-683 165-392 (531)
180 PF12688 TPR_5: Tetratrico pep 97.6 0.0012 2.6E-08 52.8 10.5 91 592-682 5-103 (120)
181 PF08579 RPM2: Mitochondrial r 97.6 0.00094 2E-08 51.0 9.2 80 152-231 28-116 (120)
182 PF14938 SNAP: Soluble NSF att 97.6 0.021 4.5E-07 54.8 21.1 100 318-417 157-269 (282)
183 cd00189 TPR Tetratricopeptide 97.6 0.00063 1.4E-08 52.9 9.1 90 559-651 7-99 (100)
184 PF01535 PPR: PPR repeat; Int 97.5 0.00012 2.5E-09 42.6 3.5 30 151-180 2-31 (31)
185 KOG2041 WD40 repeat protein [G 97.5 0.12 2.6E-06 53.0 26.0 62 348-417 849-910 (1189)
186 COG3898 Uncharacterized membra 97.5 0.085 1.8E-06 50.2 23.4 212 463-682 132-357 (531)
187 PRK10803 tol-pal system protei 97.5 0.00059 1.3E-08 63.6 9.7 86 599-684 154-247 (263)
188 KOG1130 Predicted G-alpha GTPa 97.5 0.0004 8.6E-09 65.5 8.1 257 425-682 26-343 (639)
189 PRK10866 outer membrane biogen 97.5 0.0092 2E-07 55.3 16.8 56 626-681 181-239 (243)
190 PF14559 TPR_19: Tetratricopep 97.5 0.00017 3.8E-09 51.7 4.2 48 564-614 3-51 (68)
191 COG4700 Uncharacterized protei 97.4 0.0032 6.9E-08 52.8 11.5 102 582-683 83-189 (251)
192 PF01535 PPR: PPR repeat; Int 97.4 0.0002 4.4E-09 41.6 3.4 30 283-312 2-31 (31)
193 PF05843 Suf: Suppressor of fo 97.4 0.0046 1E-07 59.0 14.1 133 519-654 3-141 (280)
194 PF08579 RPM2: Mitochondrial r 97.4 0.0026 5.7E-08 48.7 9.6 79 285-363 29-116 (120)
195 PF13414 TPR_11: TPR repeat; P 97.4 0.00038 8.3E-09 50.1 5.2 65 587-651 2-69 (69)
196 KOG1538 Uncharacterized conser 97.4 0.023 4.9E-07 57.4 18.5 265 120-445 558-846 (1081)
197 PF13428 TPR_14: Tetratricopep 97.3 0.00037 8.1E-09 44.4 3.8 42 621-662 2-43 (44)
198 PLN03098 LPA1 LOW PSII ACCUMUL 97.2 0.0012 2.6E-08 64.6 8.3 63 620-682 75-140 (453)
199 PF12688 TPR_5: Tetratrico pep 97.2 0.0066 1.4E-07 48.6 11.1 93 522-614 6-101 (120)
200 PF04840 Vps16_C: Vps16, C-ter 97.2 0.22 4.8E-06 48.1 28.6 108 220-339 178-285 (319)
201 KOG2114 Vacuolar assembly/sort 97.2 0.14 3E-06 53.9 22.9 174 123-307 339-516 (933)
202 KOG1538 Uncharacterized conser 97.2 0.019 4.1E-07 58.0 15.9 202 436-682 620-845 (1081)
203 PRK10803 tol-pal system protei 97.2 0.0057 1.2E-07 57.1 12.0 101 555-655 146-252 (263)
204 CHL00033 ycf3 photosystem I as 97.1 0.012 2.5E-07 51.5 13.1 92 151-243 37-137 (168)
205 PF10037 MRP-S27: Mitochondria 97.1 0.009 2E-07 59.3 13.3 121 445-565 60-186 (429)
206 KOG2280 Vacuolar assembly/sort 97.1 0.44 9.5E-06 49.7 29.1 341 213-612 426-794 (829)
207 PF10037 MRP-S27: Mitochondria 97.1 0.0085 1.9E-07 59.4 12.8 123 311-464 61-186 (429)
208 PRK10866 outer membrane biogen 97.1 0.058 1.3E-06 50.1 17.5 75 154-228 37-113 (243)
209 PF13371 TPR_9: Tetratricopept 97.1 0.0016 3.4E-08 47.4 5.9 65 595-659 2-68 (73)
210 PF13525 YfiO: Outer membrane 97.0 0.016 3.5E-07 52.3 13.1 153 523-675 11-199 (203)
211 PF13424 TPR_12: Tetratricopep 97.0 0.0011 2.4E-08 49.1 4.1 62 621-682 6-74 (78)
212 PF04840 Vps16_C: Vps16, C-ter 96.9 0.42 9E-06 46.3 31.4 106 387-508 179-284 (319)
213 KOG2796 Uncharacterized conser 96.9 0.1 2.2E-06 46.9 16.2 165 387-553 138-320 (366)
214 KOG0543 FKBP-type peptidyl-pro 96.9 0.0067 1.5E-07 58.1 9.6 96 588-683 257-355 (397)
215 PRK11906 transcriptional regul 96.9 0.015 3.3E-07 57.3 12.0 143 532-678 273-431 (458)
216 KOG0543 FKBP-type peptidyl-pro 96.8 0.0059 1.3E-07 58.4 8.7 92 595-686 215-323 (397)
217 PF06239 ECSIT: Evolutionarily 96.8 0.0096 2.1E-07 52.0 9.2 89 146-234 44-153 (228)
218 PF05843 Suf: Suppressor of fo 96.8 0.0095 2.1E-07 56.8 10.3 129 553-683 2-136 (280)
219 PF13525 YfiO: Outer membrane 96.8 0.033 7.2E-07 50.3 13.2 129 555-683 8-170 (203)
220 PF13281 DUF4071: Domain of un 96.8 0.15 3.2E-06 49.8 18.0 161 490-653 145-338 (374)
221 KOG1130 Predicted G-alpha GTPa 96.8 0.005 1.1E-07 58.4 7.7 127 453-579 197-342 (639)
222 COG4235 Cytochrome c biogenesi 96.8 0.029 6.3E-07 51.8 12.4 103 549-654 153-261 (287)
223 COG1729 Uncharacterized protei 96.8 0.014 2.9E-07 53.2 10.0 88 597-684 150-245 (262)
224 PF13512 TPR_18: Tetratricopep 96.7 0.038 8.1E-07 45.2 11.3 96 589-684 11-129 (142)
225 PF03704 BTAD: Bacterial trans 96.7 0.005 1.1E-07 52.4 6.6 69 622-690 64-137 (146)
226 PF09205 DUF1955: Domain of un 96.7 0.18 4E-06 40.0 14.0 141 527-686 12-152 (161)
227 PF06239 ECSIT: Evolutionarily 96.6 0.02 4.4E-07 50.1 9.5 88 278-365 44-152 (228)
228 PRK11906 transcriptional regul 96.6 0.081 1.7E-06 52.4 14.6 143 501-648 273-435 (458)
229 COG4105 ComL DNA uptake lipopr 96.6 0.53 1.1E-05 42.8 18.4 164 525-689 42-238 (254)
230 KOG2796 Uncharacterized conser 96.5 0.079 1.7E-06 47.5 12.9 134 519-652 179-318 (366)
231 KOG1258 mRNA processing protei 96.5 1.2 2.6E-05 45.6 27.4 180 485-668 296-489 (577)
232 COG3118 Thioredoxin domain-con 96.5 0.086 1.9E-06 48.6 13.2 120 561-684 143-266 (304)
233 COG5107 RNA14 Pre-mRNA 3'-end 96.5 1 2.2E-05 44.1 29.1 140 416-559 397-542 (660)
234 COG1729 Uncharacterized protei 96.4 0.021 4.6E-07 51.9 9.1 94 563-656 152-251 (262)
235 PF13281 DUF4071: Domain of un 96.4 0.59 1.3E-05 45.7 19.2 165 519-684 143-335 (374)
236 COG0457 NrfG FOG: TPR repeat [ 96.4 0.84 1.8E-05 42.5 24.7 193 487-683 60-265 (291)
237 COG5107 RNA14 Pre-mRNA 3'-end 96.3 1.2 2.6E-05 43.6 29.7 127 351-479 397-530 (660)
238 KOG1258 mRNA processing protei 96.3 1.6 3.5E-05 44.7 28.7 122 384-506 296-420 (577)
239 PF13424 TPR_12: Tetratricopep 96.3 0.0061 1.3E-07 45.0 4.0 62 588-649 5-75 (78)
240 PF13512 TPR_18: Tetratricopep 96.2 0.093 2E-06 42.9 10.7 116 524-656 17-135 (142)
241 PRK15331 chaperone protein Sic 96.1 0.055 1.2E-06 45.4 9.2 92 523-619 43-136 (165)
242 KOG1585 Protein required for f 95.9 0.82 1.8E-05 40.9 15.7 88 588-676 150-249 (308)
243 PRK11619 lytic murein transgly 95.8 3.7 8.1E-05 44.4 27.6 114 530-646 254-372 (644)
244 KOG1920 IkappaB kinase complex 95.7 4.7 0.0001 45.1 24.8 144 488-647 910-1053(1265)
245 PF10300 DUF3808: Protein of u 95.7 0.39 8.6E-06 49.6 15.4 114 565-681 246-374 (468)
246 COG0457 NrfG FOG: TPR repeat [ 95.7 1.8 4E-05 40.1 23.4 197 451-652 59-268 (291)
247 KOG4234 TPR repeat-containing 95.6 0.042 9.2E-07 47.0 6.6 124 559-684 102-234 (271)
248 PLN03098 LPA1 LOW PSII ACCUMUL 95.5 0.081 1.7E-06 52.3 9.1 65 585-649 71-141 (453)
249 PF12921 ATP13: Mitochondrial 95.4 0.13 2.8E-06 41.7 8.7 49 548-596 48-96 (126)
250 KOG2114 Vacuolar assembly/sort 95.4 4.7 0.0001 43.2 24.6 115 27-147 403-519 (933)
251 PF07719 TPR_2: Tetratricopept 95.3 0.042 9.2E-07 32.4 4.3 27 656-682 3-29 (34)
252 smart00299 CLH Clathrin heavy 95.3 0.98 2.1E-05 37.9 14.2 122 458-599 14-136 (140)
253 PF04053 Coatomer_WDAD: Coatom 95.2 0.8 1.7E-05 46.6 15.3 131 88-243 296-426 (443)
254 KOG2610 Uncharacterized conser 95.1 0.21 4.7E-06 46.5 9.8 161 527-690 113-283 (491)
255 KOG0890 Protein kinase of the 95.1 8 0.00017 46.9 24.1 320 356-685 1388-1733(2382)
256 PF10300 DUF3808: Protein of u 95.1 0.47 1E-05 49.1 13.6 116 531-648 247-375 (468)
257 COG3118 Thioredoxin domain-con 95.1 2.3 4.9E-05 39.6 16.2 154 524-679 141-297 (304)
258 smart00299 CLH Clathrin heavy 95.0 1.3 2.9E-05 37.0 14.2 127 519-665 9-136 (140)
259 KOG2610 Uncharacterized conser 95.0 0.8 1.7E-05 43.0 13.1 153 498-654 115-283 (491)
260 PF13428 TPR_14: Tetratricopep 94.9 0.043 9.3E-07 34.8 3.7 34 654-687 1-34 (44)
261 PF00515 TPR_1: Tetratricopept 94.9 0.047 1E-06 32.2 3.7 30 623-652 4-33 (34)
262 PF13176 TPR_7: Tetratricopept 94.8 0.052 1.1E-06 32.6 3.5 27 656-682 1-27 (36)
263 PF04053 Coatomer_WDAD: Coatom 94.7 1.3 2.7E-05 45.3 15.2 130 158-309 270-401 (443)
264 PF07719 TPR_2: Tetratricopept 94.6 0.046 9.9E-07 32.2 3.0 33 621-653 2-34 (34)
265 PF03704 BTAD: Bacterial trans 94.6 0.11 2.4E-06 44.1 6.5 56 353-408 64-119 (146)
266 PF12921 ATP13: Mitochondrial 94.5 0.58 1.3E-05 38.0 10.1 94 517-631 2-99 (126)
267 PF08631 SPO22: Meiosis protei 94.5 4.8 0.0001 38.5 21.9 19 629-647 255-273 (278)
268 PF09613 HrpB1_HrpK: Bacterial 94.3 0.27 5.8E-06 41.2 7.7 88 597-685 19-108 (160)
269 KOG1941 Acetylcholine receptor 94.3 0.87 1.9E-05 43.2 11.7 162 521-682 126-319 (518)
270 TIGR02561 HrpB1_HrpK type III 94.2 0.21 4.7E-06 40.9 6.9 70 600-669 22-93 (153)
271 KOG4555 TPR repeat-containing 94.2 0.13 2.8E-06 40.6 5.4 91 595-685 50-146 (175)
272 PF00637 Clathrin: Region in C 94.1 0.031 6.8E-07 47.2 2.2 128 27-164 13-140 (143)
273 COG4785 NlpI Lipoprotein NlpI, 94.0 2.1 4.5E-05 37.7 12.6 159 517-684 99-267 (297)
274 KOG1920 IkappaB kinase complex 93.9 13 0.00029 41.7 26.5 80 423-513 972-1053(1265)
275 PF07035 Mic1: Colon cancer-as 93.9 3.7 8E-05 35.1 14.6 134 301-443 14-147 (167)
276 PF02259 FAT: FAT domain; Int 93.9 5.7 0.00012 39.7 18.4 149 516-667 145-305 (352)
277 PF00515 TPR_1: Tetratricopept 93.7 0.085 1.9E-06 31.1 3.0 31 655-685 2-32 (34)
278 KOG2066 Vacuolar assembly/sort 93.7 11 0.00025 40.1 22.6 168 63-250 363-536 (846)
279 KOG4555 TPR repeat-containing 93.6 0.58 1.3E-05 37.2 7.9 92 559-653 50-148 (175)
280 PF07035 Mic1: Colon cancer-as 93.6 3.2 6.9E-05 35.5 13.1 132 42-177 15-148 (167)
281 KOG3941 Intermediate in Toll s 93.6 0.55 1.2E-05 42.8 8.9 100 147-246 65-186 (406)
282 PRK11619 lytic murein transgly 93.5 13 0.00028 40.3 37.3 452 67-553 44-512 (644)
283 COG4105 ComL DNA uptake lipopr 93.5 6 0.00013 36.2 17.9 75 156-230 41-117 (254)
284 KOG4648 Uncharacterized conser 93.4 0.14 3E-06 47.8 5.1 110 558-674 103-215 (536)
285 KOG1586 Protein required for f 93.4 2.2 4.8E-05 38.0 11.9 99 592-692 117-229 (288)
286 PF09613 HrpB1_HrpK: Bacterial 93.4 1.9 4.2E-05 36.2 11.2 108 563-675 21-130 (160)
287 PF04184 ST7: ST7 protein; In 93.4 3.5 7.5E-05 41.5 14.6 99 556-654 263-380 (539)
288 PF13174 TPR_6: Tetratricopept 92.9 0.11 2.4E-06 30.2 2.5 28 656-683 2-29 (33)
289 COG4649 Uncharacterized protei 92.9 2.2 4.7E-05 36.1 10.5 118 527-648 68-195 (221)
290 KOG4234 TPR repeat-containing 92.8 1.2 2.6E-05 38.5 9.3 93 524-621 102-202 (271)
291 PF13181 TPR_8: Tetratricopept 92.7 0.21 4.5E-06 29.4 3.6 28 624-651 5-32 (34)
292 PF00637 Clathrin: Region in C 92.6 0.012 2.6E-07 49.8 -2.8 83 457-542 13-95 (143)
293 KOG3941 Intermediate in Toll s 92.6 1.2 2.5E-05 40.9 9.4 101 413-513 64-186 (406)
294 PRK09687 putative lyase; Provi 92.2 11 0.00024 36.0 25.3 18 218-235 141-158 (280)
295 COG1747 Uncharacterized N-term 92.2 14 0.00031 37.3 18.3 151 422-579 72-232 (711)
296 COG3629 DnrI DNA-binding trans 92.1 0.78 1.7E-05 42.9 8.0 59 624-682 157-215 (280)
297 PF07721 TPR_4: Tetratricopept 92.0 0.18 4E-06 27.5 2.5 25 654-678 1-25 (26)
298 COG2976 Uncharacterized protei 91.9 4.4 9.5E-05 35.3 11.5 86 561-650 98-189 (207)
299 PF04184 ST7: ST7 protein; In 91.9 3.7 8E-05 41.3 12.7 76 588-663 259-339 (539)
300 PF04097 Nic96: Nup93/Nic96; 91.7 12 0.00026 40.5 17.7 33 587-619 499-536 (613)
301 PF02259 FAT: FAT domain; Int 91.6 5.9 0.00013 39.6 14.9 66 618-683 144-213 (352)
302 KOG1585 Protein required for f 91.6 3.5 7.5E-05 37.2 10.9 58 623-680 153-216 (308)
303 PF13176 TPR_7: Tetratricopept 91.3 0.33 7.2E-06 29.0 3.3 27 623-649 2-28 (36)
304 COG3947 Response regulator con 91.3 12 0.00027 34.8 15.0 59 624-682 283-341 (361)
305 PF08631 SPO22: Meiosis protei 91.2 14 0.00031 35.3 21.7 20 661-680 253-272 (278)
306 KOG4642 Chaperone-dependent E3 91.1 0.56 1.2E-05 41.7 5.7 87 596-682 18-106 (284)
307 COG2976 Uncharacterized protei 91.1 6.7 0.00015 34.2 11.9 91 593-684 94-189 (207)
308 PF13174 TPR_6: Tetratricopept 91.0 0.41 8.8E-06 27.7 3.5 31 623-653 3-33 (33)
309 PF13431 TPR_17: Tetratricopep 90.8 0.15 3.3E-06 30.0 1.4 25 584-608 8-33 (34)
310 PF13170 DUF4003: Protein of u 90.6 11 0.00023 36.3 14.3 60 436-495 163-226 (297)
311 PRK09687 putative lyase; Provi 90.6 16 0.00035 34.8 23.9 22 629-651 244-265 (280)
312 PF13181 TPR_8: Tetratricopept 90.6 0.47 1E-05 27.7 3.5 29 655-683 2-30 (34)
313 PF09205 DUF1955: Domain of un 90.3 8.5 0.00018 31.1 13.7 60 422-482 92-151 (161)
314 PF13374 TPR_10: Tetratricopep 90.1 0.5 1.1E-05 29.3 3.5 28 655-682 3-30 (42)
315 COG3629 DnrI DNA-binding trans 89.9 2 4.2E-05 40.3 8.5 60 351-410 153-212 (280)
316 TIGR02508 type_III_yscG type I 89.7 6 0.00013 30.0 9.0 53 125-179 46-98 (115)
317 KOG4648 Uncharacterized conser 89.7 0.89 1.9E-05 42.7 6.0 96 524-624 104-202 (536)
318 KOG1941 Acetylcholine receptor 89.4 1.4 3E-05 42.0 7.0 217 462-681 17-273 (518)
319 KOG0276 Vesicle coat complex C 89.2 7.1 0.00015 40.2 12.1 123 498-648 598-720 (794)
320 KOG0276 Vesicle coat complex C 89.2 3.4 7.3E-05 42.4 9.9 26 150-175 667-692 (794)
321 PF11207 DUF2989: Protein of u 88.9 2.1 4.6E-05 37.5 7.4 74 600-674 119-198 (203)
322 COG4649 Uncharacterized protei 88.7 14 0.00031 31.5 15.1 116 497-614 69-193 (221)
323 PF13170 DUF4003: Protein of u 88.7 12 0.00026 36.0 13.1 136 200-361 78-227 (297)
324 COG5159 RPN6 26S proteasome re 88.3 16 0.00035 33.8 12.6 53 523-575 9-68 (421)
325 KOG4570 Uncharacterized conser 88.1 6.1 0.00013 37.1 10.0 53 294-346 113-165 (418)
326 PF10602 RPN7: 26S proteasome 88.1 4.6 0.0001 35.3 9.2 95 520-614 39-139 (177)
327 KOG2066 Vacuolar assembly/sort 88.0 42 0.00092 36.2 25.7 140 1-148 372-535 (846)
328 PF14561 TPR_20: Tetratricopep 88.0 1.2 2.6E-05 33.6 4.8 41 643-683 11-51 (90)
329 PF14853 Fis1_TPR_C: Fis1 C-te 87.8 1.8 3.9E-05 28.6 4.9 31 625-655 6-36 (53)
330 PRK10941 hypothetical protein; 87.7 2.8 6.1E-05 39.4 8.1 62 623-684 184-245 (269)
331 PRK15180 Vi polysaccharide bio 87.7 6.4 0.00014 39.1 10.5 120 529-652 301-423 (831)
332 KOG3364 Membrane protein invol 87.6 3.7 8E-05 33.2 7.3 70 585-654 29-105 (149)
333 KOG0545 Aryl-hydrocarbon recep 87.6 4.2 9.2E-05 36.6 8.4 97 588-684 178-294 (329)
334 PF09986 DUF2225: Uncharacteri 87.6 3 6.5E-05 37.8 7.9 65 620-684 118-195 (214)
335 TIGR03504 FimV_Cterm FimV C-te 87.2 1.1 2.4E-05 28.2 3.5 28 658-685 3-30 (44)
336 COG2909 MalT ATP-dependent tra 87.2 52 0.0011 36.2 21.1 153 528-683 469-647 (894)
337 PF11207 DUF2989: Protein of u 87.2 20 0.00044 31.7 12.2 79 291-371 117-198 (203)
338 PF10602 RPN7: 26S proteasome 87.1 6.1 0.00013 34.6 9.4 64 150-213 37-102 (177)
339 KOG1464 COP9 signalosome, subu 86.6 26 0.00057 32.2 17.3 121 519-646 193-329 (440)
340 PF06552 TOM20_plant: Plant sp 86.5 1.2 2.6E-05 38.1 4.4 107 568-685 7-138 (186)
341 smart00028 TPR Tetratricopepti 86.1 1.1 2.5E-05 25.1 3.2 29 655-683 2-30 (34)
342 PF10345 Cohesin_load: Cohesin 85.9 58 0.0012 35.5 28.1 180 299-479 39-253 (608)
343 TIGR02561 HrpB1_HrpK type III 85.8 5.3 0.00012 33.1 7.5 75 553-630 8-87 (153)
344 PF13374 TPR_10: Tetratricopep 85.1 1.9 4.1E-05 26.5 4.0 28 621-648 3-30 (42)
345 COG4785 NlpI Lipoprotein NlpI, 84.4 29 0.00064 30.9 16.5 79 65-143 74-158 (297)
346 KOG2396 HAT (Half-A-TPR) repea 84.3 51 0.0011 33.6 30.5 393 279-682 103-558 (568)
347 cd00923 Cyt_c_Oxidase_Va Cytoc 84.0 7.7 0.00017 29.3 6.9 60 298-358 24-83 (103)
348 smart00028 TPR Tetratricopepti 83.7 2.5 5.3E-05 23.6 3.9 31 622-652 3-33 (34)
349 COG1747 Uncharacterized N-term 82.6 61 0.0013 33.2 20.6 37 628-664 213-249 (711)
350 KOG4507 Uncharacterized conser 82.4 4.2 9E-05 41.6 6.8 100 563-665 618-721 (886)
351 cd00923 Cyt_c_Oxidase_Va Cytoc 82.2 15 0.00033 27.8 7.9 63 331-393 22-84 (103)
352 PF10579 Rapsyn_N: Rapsyn N-te 82.2 2.4 5.1E-05 30.5 3.7 49 630-678 16-67 (80)
353 KOG1464 COP9 signalosome, subu 82.1 42 0.00091 31.0 14.2 179 431-609 42-252 (440)
354 PF02284 COX5A: Cytochrome c o 82.1 6.6 0.00014 30.0 6.1 60 535-596 28-87 (108)
355 KOG3364 Membrane protein invol 81.9 6.3 0.00014 31.9 6.3 68 617-684 29-101 (149)
356 COG4455 ImpE Protein of avirul 81.6 5.5 0.00012 35.3 6.3 64 591-654 4-69 (273)
357 KOG1586 Protein required for f 81.3 42 0.00091 30.4 18.6 17 563-579 165-181 (288)
358 PF02284 COX5A: Cytochrome c o 80.8 11 0.00024 28.8 6.9 60 167-227 28-87 (108)
359 PF04910 Tcf25: Transcriptiona 80.6 65 0.0014 32.2 16.3 85 597-681 112-220 (360)
360 PF10345 Cohesin_load: Cohesin 80.5 93 0.002 33.9 39.3 84 295-378 153-252 (608)
361 PF06552 TOM20_plant: Plant sp 80.4 4.1 9E-05 34.9 5.2 91 533-624 7-117 (186)
362 PF04910 Tcf25: Transcriptiona 80.4 57 0.0012 32.6 14.0 96 587-682 39-167 (360)
363 PF07721 TPR_4: Tetratricopept 79.4 3.5 7.6E-05 22.3 3.1 21 592-612 5-25 (26)
364 KOG2063 Vacuolar assembly/sort 79.0 51 0.0011 36.8 14.0 124 134-262 494-638 (877)
365 KOG1550 Extracellular protein 78.7 99 0.0021 33.2 21.4 66 415-481 287-358 (552)
366 PF14669 Asp_Glu_race_2: Putat 78.5 45 0.00098 29.1 14.1 177 311-511 3-206 (233)
367 TIGR02508 type_III_yscG type I 78.0 28 0.00062 26.6 9.0 53 257-311 46-98 (115)
368 PF04190 DUF410: Protein of un 76.8 68 0.0015 30.3 14.8 137 31-178 20-170 (260)
369 COG4976 Predicted methyltransf 76.5 4.5 9.9E-05 36.0 4.4 55 632-686 7-61 (287)
370 PRK12798 chemotaxis protein; R 76.3 88 0.0019 31.3 20.4 179 499-680 125-321 (421)
371 PF14853 Fis1_TPR_C: Fis1 C-te 75.6 4.7 0.0001 26.7 3.4 32 655-686 2-33 (53)
372 KOG1550 Extracellular protein 75.3 1.2E+02 0.0027 32.5 21.0 53 328-383 261-325 (552)
373 KOG4507 Uncharacterized conser 74.9 10 0.00023 38.9 7.0 132 549-685 568-707 (886)
374 PF12862 Apc5: Anaphase-promot 74.8 8.4 0.00018 29.4 5.2 53 630-682 8-69 (94)
375 KOG3824 Huntingtin interacting 74.7 5.4 0.00012 37.2 4.6 50 631-680 127-176 (472)
376 COG4455 ImpE Protein of avirul 74.6 65 0.0014 29.0 11.4 122 521-654 5-139 (273)
377 smart00386 HAT HAT (Half-A-TPR 74.1 6.2 0.00013 22.3 3.5 30 634-663 1-30 (33)
378 KOG0890 Protein kinase of the 73.9 2.5E+02 0.0054 35.3 31.9 149 286-440 1388-1542(2382)
379 KOG0551 Hsp90 co-chaperone CNS 72.5 21 0.00046 34.1 7.9 93 588-680 81-179 (390)
380 PF09477 Type_III_YscG: Bacter 72.3 40 0.00087 26.2 7.8 53 125-179 47-99 (116)
381 KOG1308 Hsp70-interacting prot 72.1 2.5 5.4E-05 40.1 2.0 119 562-684 124-245 (377)
382 KOG2396 HAT (Half-A-TPR) repea 72.0 1.2E+02 0.0027 31.1 29.5 75 147-223 103-178 (568)
383 KOG0403 Neoplastic transformat 71.7 1.2E+02 0.0025 30.6 17.4 349 60-446 218-612 (645)
384 KOG4642 Chaperone-dependent E3 70.9 42 0.0009 30.6 8.9 78 499-578 23-104 (284)
385 KOG4570 Uncharacterized conser 70.1 33 0.00072 32.5 8.5 98 481-579 59-162 (418)
386 KOG2063 Vacuolar assembly/sort 69.8 2E+02 0.0043 32.5 25.4 27 283-309 506-532 (877)
387 TIGR03504 FimV_Cterm FimV C-te 69.4 12 0.00027 23.6 4.0 26 421-446 4-29 (44)
388 PF07720 TPR_3: Tetratricopept 68.2 17 0.00036 21.8 4.2 19 658-676 5-23 (36)
389 PF09670 Cas_Cas02710: CRISPR- 68.2 65 0.0014 32.5 11.1 52 527-579 141-196 (379)
390 PF07163 Pex26: Pex26 protein; 67.7 98 0.0021 29.1 10.8 89 286-374 88-181 (309)
391 COG3947 Response regulator con 67.3 1.1E+02 0.0025 28.8 11.8 50 355-404 283-332 (361)
392 cd08819 CARD_MDA5_2 Caspase ac 67.2 21 0.00046 26.5 5.4 33 131-164 49-81 (88)
393 PF04190 DUF410: Protein of un 67.2 1.1E+02 0.0025 28.8 17.0 140 159-309 20-169 (260)
394 PF07163 Pex26: Pex26 protein; 66.4 66 0.0014 30.1 9.5 87 423-509 90-181 (309)
395 PRK10941 hypothetical protein; 65.1 39 0.00085 31.9 8.3 66 591-656 184-251 (269)
396 PF11846 DUF3366: Domain of un 65.1 13 0.00027 33.3 5.0 37 615-651 139-175 (193)
397 KOG2471 TPR repeat-containing 65.1 49 0.0011 33.5 9.0 63 625-690 211-273 (696)
398 PF14863 Alkyl_sulf_dimr: Alky 64.1 28 0.0006 29.0 6.3 65 605-672 58-122 (141)
399 PF10366 Vps39_1: Vacuolar sor 64.0 54 0.0012 25.8 7.7 29 654-682 39-67 (108)
400 KOG0376 Serine-threonine phosp 63.4 5.7 0.00012 39.8 2.5 101 558-661 10-113 (476)
401 PF04097 Nic96: Nup93/Nic96; 63.1 2.3E+02 0.0051 30.9 21.9 19 426-444 437-455 (613)
402 cd08819 CARD_MDA5_2 Caspase ac 61.8 33 0.00071 25.5 5.5 32 365-400 50-81 (88)
403 COG0790 FOG: TPR repeat, SEL1 60.7 1.6E+02 0.0035 28.3 17.8 77 606-685 173-268 (292)
404 PF13934 ELYS: Nuclear pore co 60.5 1.1E+02 0.0025 28.0 10.3 114 21-140 76-198 (226)
405 PF10579 Rapsyn_N: Rapsyn N-te 60.4 22 0.00047 25.8 4.3 18 592-609 47-64 (80)
406 PF00244 14-3-3: 14-3-3 protei 60.2 1.3E+02 0.0027 28.0 10.6 59 522-580 6-65 (236)
407 KOG2062 26S proteasome regulat 60.1 2.6E+02 0.0057 30.5 31.6 185 497-693 512-701 (929)
408 COG5159 RPN6 26S proteasome re 59.6 1.6E+02 0.0034 27.8 12.2 133 422-554 9-166 (421)
409 KOG0292 Vesicle coat complex C 59.3 97 0.0021 34.2 10.5 130 495-648 652-781 (1202)
410 PHA02875 ankyrin repeat protei 59.2 2.2E+02 0.0047 29.2 16.7 113 29-146 7-127 (413)
411 KOG0376 Serine-threonine phosp 59.1 13 0.00028 37.4 4.2 102 524-630 11-115 (476)
412 KOG4077 Cytochrome c oxidase, 57.4 55 0.0012 26.3 6.3 50 611-660 75-124 (149)
413 KOG0991 Replication factor C, 57.2 1.6E+02 0.0034 27.0 11.6 132 418-558 132-279 (333)
414 cd00280 TRFH Telomeric Repeat 56.1 70 0.0015 27.8 7.3 27 629-656 120-146 (200)
415 PRK13342 recombination factor 55.9 2.5E+02 0.0053 28.9 14.4 168 331-512 152-331 (413)
416 PRK13800 putative oxidoreducta 55.5 3.9E+02 0.0084 31.0 26.1 52 108-159 625-676 (897)
417 KOG4077 Cytochrome c oxidase, 54.3 56 0.0012 26.3 6.0 47 299-345 67-113 (149)
418 PF11848 DUF3368: Domain of un 54.3 51 0.0011 21.3 5.0 33 160-192 13-45 (48)
419 PF08311 Mad3_BUB1_I: Mad3/BUB 54.1 86 0.0019 25.6 7.6 42 638-679 81-124 (126)
420 COG4976 Predicted methyltransf 53.9 36 0.00077 30.7 5.5 48 564-614 7-55 (287)
421 PF10516 SHNi-TPR: SHNi-TPR; 53.9 29 0.00062 21.1 3.5 28 655-682 2-29 (38)
422 PF11846 DUF3366: Domain of un 53.4 51 0.0011 29.4 6.8 32 583-614 139-170 (193)
423 KOG1308 Hsp70-interacting prot 53.3 18 0.00039 34.7 3.9 118 527-648 124-243 (377)
424 KOG4279 Serine/threonine prote 52.8 98 0.0021 33.4 9.2 99 519-622 203-322 (1226)
425 KOG2422 Uncharacterized conser 51.8 3.1E+02 0.0068 28.9 15.1 191 488-682 286-515 (665)
426 COG2256 MGS1 ATPase related to 50.5 2.8E+02 0.0061 27.9 12.4 71 148-218 245-323 (436)
427 COG2912 Uncharacterized conser 50.2 60 0.0013 30.4 6.6 58 625-682 186-243 (269)
428 KOG2422 Uncharacterized conser 50.2 3.3E+02 0.0072 28.7 13.5 53 193-245 351-404 (665)
429 COG5191 Uncharacterized conser 49.5 28 0.0006 32.9 4.4 77 587-663 106-185 (435)
430 KOG3807 Predicted membrane pro 49.3 1.4E+02 0.003 28.7 8.8 54 522-577 280-336 (556)
431 PF10366 Vps39_1: Vacuolar sor 49.0 93 0.002 24.5 6.7 27 283-309 41-67 (108)
432 PRK13800 putative oxidoreducta 48.9 4.9E+02 0.011 30.2 25.0 262 77-357 625-890 (897)
433 PF08424 NRDE-2: NRDE-2, neces 48.2 2.8E+02 0.006 27.3 11.6 58 336-394 51-108 (321)
434 KOG4814 Uncharacterized conser 48.1 74 0.0016 33.6 7.4 59 624-682 398-456 (872)
435 KOG1114 Tripeptidyl peptidase 47.9 4.6E+02 0.01 29.7 13.7 54 551-604 1230-1283(1304)
436 PF11768 DUF3312: Protein of u 47.9 1.8E+02 0.0039 30.5 10.0 23 491-513 413-435 (545)
437 KOG2659 LisH motif-containing 46.8 2.2E+02 0.0047 26.0 9.2 99 548-649 22-132 (228)
438 KOG2300 Uncharacterized conser 46.5 3.5E+02 0.0076 27.9 26.8 380 287-682 13-473 (629)
439 PF04781 DUF627: Protein of un 45.8 1.5E+02 0.0032 23.5 7.1 39 639-677 63-101 (111)
440 PF06957 COPI_C: Coatomer (COP 45.6 1.6E+02 0.0035 29.9 9.3 43 611-653 289-333 (422)
441 KOG0687 26S proteasome regulat 45.6 2.1E+02 0.0046 27.6 9.3 132 548-681 66-208 (393)
442 KOG3824 Huntingtin interacting 45.5 35 0.00077 32.1 4.4 49 563-614 127-176 (472)
443 PF09477 Type_III_YscG: Bacter 45.5 1.5E+02 0.0032 23.3 9.4 49 95-145 48-96 (116)
444 PF12796 Ank_2: Ankyrin repeat 45.5 78 0.0017 23.5 5.9 15 129-143 5-19 (89)
445 PF10255 Paf67: RNA polymerase 45.4 2.8E+02 0.0061 28.1 10.9 92 85-176 70-191 (404)
446 cd08326 CARD_CASP9 Caspase act 45.1 45 0.00097 24.8 4.1 34 130-163 42-75 (84)
447 COG0735 Fur Fe2+/Zn2+ uptake r 44.7 1.1E+02 0.0024 25.7 7.0 63 170-233 7-69 (145)
448 PRK09857 putative transposase; 44.4 1.1E+02 0.0025 29.4 7.9 64 625-688 211-274 (292)
449 KOG2471 TPR repeat-containing 44.0 3.8E+02 0.0083 27.6 17.3 107 561-667 249-382 (696)
450 KOG2581 26S proteasome regulat 43.7 3.5E+02 0.0077 27.1 14.4 124 529-652 138-279 (493)
451 cd08326 CARD_CASP9 Caspase act 43.4 74 0.0016 23.7 5.1 35 398-432 43-77 (84)
452 PF12862 Apc5: Anaphase-promot 43.4 78 0.0017 24.1 5.5 25 625-649 46-70 (94)
453 PF04762 IKI3: IKI3 family; I 43.1 2.7E+02 0.0059 32.2 11.8 28 186-213 814-843 (928)
454 KOG3783 Uncharacterized conser 43.1 4.2E+02 0.009 27.8 20.0 68 617-684 444-521 (546)
455 PF11848 DUF3368: Domain of un 42.1 94 0.002 20.0 5.1 34 291-324 12-45 (48)
456 PRK10564 maltose regulon perip 41.2 51 0.0011 31.3 4.8 37 151-187 259-295 (303)
457 COG2909 MalT ATP-dependent tra 41.0 5.7E+02 0.012 28.8 26.0 222 290-514 424-687 (894)
458 PF14561 TPR_20: Tetratricopep 40.5 1.6E+02 0.0035 22.2 7.7 50 620-669 22-73 (90)
459 KOG0292 Vesicle coat complex C 38.5 55 0.0012 35.9 5.0 44 600-646 655-698 (1202)
460 PF11663 Toxin_YhaV: Toxin wit 37.8 44 0.00095 27.3 3.3 31 162-194 108-138 (140)
461 PF11817 Foie-gras_1: Foie gra 37.6 1.3E+02 0.0028 28.2 7.1 54 590-643 180-241 (247)
462 PF10255 Paf67: RNA polymerase 37.0 1.2E+02 0.0027 30.5 7.1 58 556-613 126-189 (404)
463 COG4259 Uncharacterized protei 36.4 1.2E+02 0.0026 23.2 5.1 29 630-658 82-110 (121)
464 PF11663 Toxin_YhaV: Toxin wit 36.4 39 0.00085 27.5 2.8 34 526-561 104-137 (140)
465 cd07153 Fur_like Ferric uptake 36.2 63 0.0014 25.7 4.3 47 27-73 6-52 (116)
466 PF12069 DUF3549: Protein of u 36.1 4.3E+02 0.0094 26.0 12.0 135 492-628 172-306 (340)
467 KOG2062 26S proteasome regulat 36.1 6.3E+02 0.014 27.8 33.7 119 561-682 510-634 (929)
468 PF03745 DUF309: Domain of unk 36.1 52 0.0011 22.7 3.1 35 31-65 9-43 (62)
469 COG4259 Uncharacterized protei 36.0 1.2E+02 0.0026 23.2 5.0 47 635-681 52-99 (121)
470 COG0735 Fur Fe2+/Zn2+ uptake r 35.7 1.9E+02 0.0042 24.3 7.1 48 151-198 22-69 (145)
471 COG4941 Predicted RNA polymera 35.4 3.3E+02 0.0071 26.6 8.9 119 533-655 272-400 (415)
472 PRK10564 maltose regulon perip 35.3 75 0.0016 30.2 4.9 38 418-455 259-296 (303)
473 PF14689 SPOB_a: Sensor_kinase 35.3 65 0.0014 22.2 3.5 27 151-177 25-51 (62)
474 COG5187 RPN7 26S proteasome re 35.2 1.2E+02 0.0025 28.6 5.9 133 548-682 77-220 (412)
475 KOG2758 Translation initiation 35.0 4.3E+02 0.0093 25.6 9.9 131 539-677 22-152 (432)
476 PF09670 Cas_Cas02710: CRISPR- 35.0 4.9E+02 0.011 26.3 11.7 56 424-480 139-198 (379)
477 PF04090 RNA_pol_I_TF: RNA pol 34.9 1.2E+02 0.0025 27.1 5.8 88 623-710 44-132 (199)
478 cd00280 TRFH Telomeric Repeat 34.8 2E+02 0.0043 25.3 6.8 48 200-247 85-139 (200)
479 PF14669 Asp_Glu_race_2: Putat 34.8 3.3E+02 0.0071 24.2 13.6 55 322-376 138-206 (233)
480 PF13762 MNE1: Mitochondrial s 34.6 2.8E+02 0.006 23.3 8.6 47 185-231 80-127 (145)
481 cd08332 CARD_CASP2 Caspase act 34.6 77 0.0017 23.9 4.1 31 131-161 47-77 (90)
482 PF13762 MNE1: Mitochondrial s 34.6 2.8E+02 0.006 23.3 9.2 51 279-329 77-128 (145)
483 PF11817 Foie-gras_1: Foie gra 34.4 92 0.002 29.2 5.6 53 558-610 184-240 (247)
484 KOG1498 26S proteasome regulat 34.2 4.9E+02 0.011 26.1 15.4 99 590-688 133-246 (439)
485 KOG2034 Vacuolar sorting prote 33.6 7.4E+02 0.016 27.9 25.5 260 393-679 366-652 (911)
486 PF14689 SPOB_a: Sensor_kinase 33.3 59 0.0013 22.4 3.0 22 557-578 28-49 (62)
487 KOG2034 Vacuolar sorting prote 32.7 7.7E+02 0.017 27.8 31.6 287 227-532 366-676 (911)
488 KOG4567 GTPase-activating prot 32.6 4E+02 0.0087 25.6 8.9 84 205-289 264-357 (370)
489 PRK12798 chemotaxis protein; R 32.4 5.5E+02 0.012 26.1 17.6 189 490-683 85-286 (421)
490 KOG0686 COP9 signalosome, subu 32.2 5.4E+02 0.012 25.9 13.0 90 152-243 153-253 (466)
491 PF12583 TPPII_N: Tripeptidyl 32.2 1.7E+02 0.0036 23.9 5.6 38 630-667 86-123 (139)
492 KOG4279 Serine/threonine prote 32.1 7.3E+02 0.016 27.4 12.5 182 470-654 182-400 (1226)
493 PF12926 MOZART2: Mitotic-spin 31.7 2.2E+02 0.0048 21.3 7.0 42 205-246 29-70 (88)
494 PHA02875 ankyrin repeat protei 31.7 5.8E+02 0.012 26.1 18.8 15 68-82 11-25 (413)
495 PF11838 ERAP1_C: ERAP1-like C 31.6 5E+02 0.011 25.3 13.0 169 297-496 146-320 (324)
496 PF15297 CKAP2_C: Cytoskeleton 31.6 1.1E+02 0.0023 29.9 5.4 62 2-66 120-185 (353)
497 KOG4521 Nuclear pore complex, 31.5 9.1E+02 0.02 28.4 13.9 83 520-606 986-1072(1480)
498 cd02680 MIT_calpain7_2 MIT: do 30.9 68 0.0015 23.2 3.1 18 632-649 18-35 (75)
499 PF12796 Ank_2: Ankyrin repeat 30.6 1.9E+02 0.0041 21.3 5.9 80 97-183 4-86 (89)
500 PRK14700 recombination factor 30.6 5E+02 0.011 25.0 13.2 94 148-241 122-223 (300)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.5e-92 Score=778.72 Aligned_cols=670 Identities=28% Similarity=0.517 Sum_probs=503.0
Q ss_pred hhHHHHHhhcCcCCCCCCchhhHHHHHHHhhccchhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHHHHhh
Q 005136 2 KASLRSLFSINPETSFNSYIETCLCLLKDITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVKD 81 (712)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 81 (712)
++|+.+|..| ...|++|+..+|..++++|...+.+..|.+++..+++.|+.++..+.+.++.+|++.|+.+.|..+|++
T Consensus 68 ~~A~~l~~~m-~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~ 146 (857)
T PLN03077 68 EQALKLLESM-QELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGK 146 (857)
T ss_pred HHHHHHHHHH-HhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhc
Confidence 4555566665 555555666666666666655555666666666666666555555566666666666666666666666
Q ss_pred cCCCCcchHHHHHHHHHhcCChHHHHHHHhhCC----CCChhHHHHHHHHHHccCChHHHHHHhhhCC----CCCcccHH
Q 005136 82 LNGFDLVVHNCMINANIQWGNLEEAQRLFDGMP----ERNEVSWTALISGFMKHGRVEESMWYFERNP----FQNVISWT 153 (712)
Q Consensus 82 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~ 153 (712)
|.+||..+|+.++.+|++.|++++|..+|++|. .||..||+.++.++++.++++.+.+++..+. .+|+.+||
T Consensus 147 m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n 226 (857)
T PLN03077 147 MPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVN 226 (857)
T ss_pred CCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHh
Confidence 655666666666666666666666666665553 2555566666666655555555555554322 34555666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccC
Q 005136 154 AAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMG 233 (712)
Q Consensus 154 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 233 (712)
.+|.+|++.|++++|..+|++|. .||..+|+.+|.+|.+.|++++|.++|++|.+.|+.||..+|+.++.++++.|
T Consensus 227 ~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g 302 (857)
T PLN03077 227 ALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG 302 (857)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Confidence 66666666666666666666554 24555566666666666666666666666666666666666666666666666
Q ss_pred ChHHHHHHHhhcCC----CCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005136 234 EVDLARSVFDRMEK----RDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTR 309 (712)
Q Consensus 234 ~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 309 (712)
+.+.+.+++..+.+ ||..+|+.++.+|++.|++++|.++|++|..+|..+|+.++.+|++.|++++|+++|++|.+
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~ 382 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 66666666555543 55556666666666666666666666666556666666666666666666666666666655
Q ss_pred CCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHH
Q 005136 310 YSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWN 389 (712)
Q Consensus 310 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 389 (712)
.|+.||..||+.++.+|++.|+++.|.+++..+.+.|+.++..++++|+++|++.|++++|.++|++|
T Consensus 383 ~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m------------ 450 (857)
T PLN03077 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI------------ 450 (857)
T ss_pred hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhC------------
Confidence 56666666666666666666666666666666666555555555555555555555555555555554
Q ss_pred HHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHH
Q 005136 390 SMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEK 469 (712)
Q Consensus 390 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~ 469 (712)
.++|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||..++.+|++.|+++.
T Consensus 451 ----------------------~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~ 507 (857)
T PLN03077 451 ----------------------PEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMC 507 (857)
T ss_pred ----------------------CCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHH
Confidence 444555555555555555555555999999986 599999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 005136 470 GKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSIT 549 (712)
Q Consensus 470 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 549 (712)
+.+++..+.+.|+.++..+++.|+++|+++|++++|.++|+.+ .+|..+|++++.+|++.|+.++|+++|++|.+.|+.
T Consensus 508 ~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~ 586 (857)
T PLN03077 508 GKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN 586 (857)
T ss_pred hHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005136 550 PNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSG 629 (712)
Q Consensus 550 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 629 (712)
||..||+.++.+|.+.|++++|.++|+.|.+.+++.|+..+|++++++|.+.|++++|.+++++|+.+|+..+|..++.+
T Consensus 587 Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~a 666 (857)
T PLN03077 587 PDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNA 666 (857)
T ss_pred CCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999978899999999999999999999999999999999999999999999999
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCcccEEEECCEEEEEecCCCC
Q 005136 630 CKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLRKSGGCSWVEVRNQVHFFFQKTDH 709 (712)
Q Consensus 630 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (712)
|..+|+.+.++...+++++++|+++..|..|+++|.+.|+|++|.++.+.|++.|+++.||.|||++.+.+|.|..||..
T Consensus 667 c~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~ 746 (857)
T PLN03077 667 CRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDES 746 (857)
T ss_pred HHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 005136 710 NPK 712 (712)
Q Consensus 710 ~~~ 712 (712)
||+
T Consensus 747 h~~ 749 (857)
T PLN03077 747 HPQ 749 (857)
T ss_pred Ccc
Confidence 995
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.7e-72 Score=619.02 Aligned_cols=618 Identities=18% Similarity=0.248 Sum_probs=578.1
Q ss_pred CCCCcchhhhHHHHHHhcCCChhHhHHHHhhcC----CCCcchHHHHHHHHHhcCChHHHHHHHhhCC----CCChhHHH
Q 005136 51 GIHKERYLTTRLLIMYLGSRKSLEANEIVKDLN----GFDLVVHNCMINANIQWGNLEEAQRLFDGMP----ERNEVSWT 122 (712)
Q Consensus 51 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~ 122 (712)
...++...++.++..|++.|++++|..+|+.+. +|+..+|..++.++.+.+.++.+..++..+. .++...++
T Consensus 46 ~~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 46 SSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred hcccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHH
Confidence 446677778888888888888888888888873 3777888888888888888888888887654 36778899
Q ss_pred HHHHHHHccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHH
Q 005136 123 ALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRL 202 (712)
Q Consensus 123 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~ 202 (712)
+|+.+|++.|+++.|.++|++|++||+.+||.+|.+|++.|++++|+++|++|...|+.||..||+.++.+|...++++.
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCC----C
Q 005136 203 GLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMP----E 278 (712)
Q Consensus 203 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~ 278 (712)
+.+++..+.+.|+.|+..+++.|+.+|++.|+++.|.++|++|.++|..+|+.++.+|++.|++++|.++|++|. .
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~ 285 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999996 4
Q ss_pred CCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHH
Q 005136 279 RNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALI 358 (712)
Q Consensus 279 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 358 (712)
||..+|+.++.++++.|+.+.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|+.|. .||..+|+.++
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li 361 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMI 361 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999985 47899999999
Q ss_pred HHHHhcCChHHHHHHHHhhhcCCC-CceeeHHHHHHHHhccCChhhHHHHhhcCCC----CCcccHHHHHHHHHhcCChh
Q 005136 359 DLYSKCGETKDGRLVFDSIVEKDV-AHVVSWNSMIGGYGLNGQMEEAKELFDNMPK----RNDVSWSAIISGYLEHKQFD 433 (712)
Q Consensus 359 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~ 433 (712)
.+|++.|++++|.++|++|.+.+. |+..+|+.++.+|++.|+++.+.++++.+.+ ++..+|+.|+.+|++.|+++
T Consensus 362 ~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~ 441 (857)
T PLN03077 362 SGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID 441 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHH
Confidence 999999999999999999998886 8999999999999999999999999998874 68889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC
Q 005136 434 LVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP 513 (712)
Q Consensus 434 ~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (712)
+|.++|++|. .+|..+|+.++.+|++.|+.++|..+|.+|.. ++.||..+|..++.+|++.|+++.+.+++..+.
T Consensus 442 ~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~ 516 (857)
T PLN03077 442 KALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVL 516 (857)
T ss_pred HHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH
Confidence 9999999985 46888999999999999999999999999986 589999999999999999999999999998876
Q ss_pred ----CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchH
Q 005136 514 ----DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGR 589 (712)
Q Consensus 514 ----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~ 589 (712)
.++..++++|+.+|++.|+.++|.++|+.+ .||..+|+.++.+|++.|+.++|.++|++|. ..|+.||..
T Consensus 517 ~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~-~~g~~Pd~~ 590 (857)
T PLN03077 517 RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMV-ESGVNPDEV 590 (857)
T ss_pred HhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCCCcc
Confidence 468889999999999999999999999886 6899999999999999999999999999999 569999999
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 005136 590 HYTCVVDMLSRSGRLSEAEDFINSM----PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYA 665 (712)
Q Consensus 590 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 665 (712)
+|+.++.+|.+.|++++|.++|+.| +..|+..+|..++.++.+.|++++|+++++++. ..|+ +.+|..|+.+|.
T Consensus 591 T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~~pd-~~~~~aLl~ac~ 668 (857)
T PLN03077 591 TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-ITPD-PAVWGALLNACR 668 (857)
T ss_pred cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC-CCCC-HHHHHHHHHHHH
Confidence 9999999999999999999999998 468999999999999999999999999999873 5665 789999999999
Q ss_pred hcCCchhHHHHHHHHHhCCC
Q 005136 666 SAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 666 ~~g~~~eA~~~~~~~~~~~~ 685 (712)
..|+.+.+....+++.+..+
T Consensus 669 ~~~~~e~~e~~a~~l~~l~p 688 (857)
T PLN03077 669 IHRHVELGELAAQHIFELDP 688 (857)
T ss_pred HcCChHHHHHHHHHHHhhCC
Confidence 99999999999988887543
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.4e-71 Score=599.02 Aligned_cols=502 Identities=38% Similarity=0.647 Sum_probs=472.9
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHH
Q 005136 146 FQNVISWTAAICGFVQNGFSFEALKLFLKLLESG-VKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNS 224 (712)
Q Consensus 146 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 224 (712)
.++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++.+.+.+++..|.+.|+.|+..+++.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3567799999999999999999999999999864 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHH
Q 005136 225 LITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLF 304 (712)
Q Consensus 225 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 304 (712)
++.+|++.|+++.|.++|+ +|.+||..+|+.++.+|++.|++++|+++|
T Consensus 164 Li~~y~k~g~~~~A~~lf~-------------------------------~m~~~~~~t~n~li~~~~~~g~~~~A~~lf 212 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFD-------------------------------EMPERNLASWGTIIGGLVDAGNYREAFALF 212 (697)
T ss_pred HHHHHhcCCCHHHHHHHHh-------------------------------cCCCCCeeeHHHHHHHHHHCcCHHHHHHHH
Confidence 9999999999999988888 666788889999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCc
Q 005136 305 RQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAH 384 (712)
Q Consensus 305 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 384 (712)
++|.+.|+.|+..+|+.++.+|++.|..+.+.+++..+.+.|+.+|..++++|+.+|++.|++++|.++|++|... +
T Consensus 213 ~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~---~ 289 (697)
T PLN03081 213 REMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK---T 289 (697)
T ss_pred HHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC---C
Confidence 9999999999999999999999999999999999999999999999999999999998888888888888777543 2
Q ss_pred eeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 005136 385 VVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASV 464 (712)
Q Consensus 385 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~ 464 (712)
..+|+.++.+|++.|+.++| +++|++|...|+.||..||+.++.+|++.
T Consensus 290 ~vt~n~li~~y~~~g~~~eA-------------------------------~~lf~~M~~~g~~pd~~t~~~ll~a~~~~ 338 (697)
T PLN03081 290 TVAWNSMLAGYALHGYSEEA-------------------------------LCLYYEMRDSGVSIDQFTFSIMIRIFSRL 338 (697)
T ss_pred hhHHHHHHHHHHhCCCHHHH-------------------------------HHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 45555555555555555555 99999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHH
Q 005136 465 ASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEME 544 (712)
Q Consensus 465 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 544 (712)
|+++.|.+++..|.+.|+.|+..+++.|+++|++.|++++|.++|++|.++|..+|+.|+.+|++.|+.++|+++|++|.
T Consensus 339 g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~ 418 (697)
T PLN03081 339 ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMI 418 (697)
T ss_pred cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHH
Q 005136 545 KTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSMPFEPDSNAWA 624 (712)
Q Consensus 545 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 624 (712)
+.|+.||..||+.++.+|.+.|++++|.++|+.|.+.+++.|+..+|+.++++|++.|++++|.+++++++..|+..+|.
T Consensus 419 ~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~ 498 (697)
T PLN03081 419 AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWA 498 (697)
T ss_pred HhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHH
Confidence 99999999999999999999999999999999998778999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCcccEEEECCEEEEEe
Q 005136 625 SLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLRKSGGCSWVEVRNQVHFFF 704 (712)
Q Consensus 625 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (712)
.++.+|..+|+++.|+.++++++++.|++...|..|+.+|.+.|+|++|.++++.|.++|+++.||+||+++.+.+|.|+
T Consensus 499 ~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~ 578 (697)
T PLN03081 499 ALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFF 578 (697)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 005136 705 QKTDHNPK 712 (712)
Q Consensus 705 ~~~~~~~~ 712 (712)
+||..||+
T Consensus 579 ~~d~~h~~ 586 (697)
T PLN03081 579 SGDRLHPQ 586 (697)
T ss_pred cCCCCCcc
Confidence 99999995
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.7e-64 Score=545.24 Aligned_cols=525 Identities=16% Similarity=0.229 Sum_probs=378.9
Q ss_pred CcchhhhHHHHHHhcCCChhHhHHHHhhcCC-----CCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHH
Q 005136 54 KERYLTTRLLIMYLGSRKSLEANEIVKDLNG-----FDLVVHNCMINANIQWGNLEEAQRLFDGMPERNEVSWTALISGF 128 (712)
Q Consensus 54 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 128 (712)
++...+..++..+++.|++++|.++|+.|.. ++..+++.++.+|.+.|.+++|..+|+.|.+||..+|+.++.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3444455555555555666666666665533 23334445555566666666666666666666666666666666
Q ss_pred HccCChHHHHHHhhhCC----CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHH
Q 005136 129 MKHGRVEESMWYFERNP----FQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGL 204 (712)
Q Consensus 129 ~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~ 204 (712)
++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 66666666666665543 35666677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcC------CCCcchHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 005136 205 SVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRME------KRDVVSWTVILDVFIEMGDLGEARRIFDEMPE 278 (712)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 278 (712)
++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777776664 24555555555555555555555555555543
Q ss_pred ----CCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHH
Q 005136 279 ----RNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFIS 354 (712)
Q Consensus 279 ----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 354 (712)
|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 5667888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhcCChHHHHHHHHhhhcCCC-CceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChh
Q 005136 355 NALIDLYSKCGETKDGRLVFDSIVEKDV-AHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFD 433 (712)
Q Consensus 355 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 433 (712)
+.++.+|++.|++++|.++|++|...+. |+..+|+.+|.+|++.|++++|
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeA----------------------------- 738 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKA----------------------------- 738 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHH-----------------------------
Confidence 8888888888888888888888876554 5555555555555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC
Q 005136 434 LVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP 513 (712)
Q Consensus 434 ~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (712)
.++|++|...|+.||..||+.++.+|++.|+++.|.+++.+|.+.|+.|+..+|+.++.++.+ ++++|..+.+.+.
T Consensus 739 --lelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~ 814 (1060)
T PLN03218 739 --LEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVV 814 (1060)
T ss_pred --HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999876542 3555554433322
Q ss_pred CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHH
Q 005136 514 DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTC 593 (712)
Q Consensus 514 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 593 (712)
. |+. .......+..++|+.+|++|.+.|+.||..||+.++.+++..+....+..+++.+. ..+..|+..+|+.
T Consensus 815 ~-----f~~-g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~-~~~~~~~~~~y~~ 887 (1060)
T PLN03218 815 S-----FDS-GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG-ISADSQKQSNLST 887 (1060)
T ss_pred h-----hhc-cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc-cCCCCcchhhhHH
Confidence 1 100 00111122346799999999999999999999999988889999999999999887 4477888999999
Q ss_pred HHHHhhhcCChHHHHHHHHhC---CCCCCH
Q 005136 594 VVDMLSRSGRLSEAEDFINSM---PFEPDS 620 (712)
Q Consensus 594 l~~~~~~~g~~~~A~~~~~~~---~~~p~~ 620 (712)
+++++.+. .++|..++++| ++.|+.
T Consensus 888 Li~g~~~~--~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 888 LVDGFGEY--DPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred HHHhhccC--hHHHHHHHHHHHHcCCCCCc
Confidence 99988432 46899999998 555653
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2e-61 Score=523.01 Aligned_cols=533 Identities=15% Similarity=0.200 Sum_probs=399.7
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHhhCCCCC-----hhHHHHHHHHHHccCChHHHHHHhhhCCCCCcccHHHHHHHH
Q 005136 85 FDLVVHNCMINANIQWGNLEEAQRLFDGMPERN-----EVSWTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGF 159 (712)
Q Consensus 85 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~ 159 (712)
++...|..++..+++.|++++|.++|++|.+++ ..+++.++..|.+.|.+++|..+|+.|..||..+|+.++.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 455667777777777777777777777776543 334556666777777777777777777777777777777777
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHH
Q 005136 160 VQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLAR 239 (712)
Q Consensus 160 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 239 (712)
++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+.+.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHh--CCCCCCHH
Q 005136 240 SVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTR--YSFKPNTS 317 (712)
Q Consensus 240 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~ 317 (712)
++|++|.+. -..||..+|+.++.+|++.|++++|.++|++|.. .|+.||..
T Consensus 528 ~lf~~M~~~---------------------------Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~v 580 (1060)
T PLN03218 528 GAYGIMRSK---------------------------NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHI 580 (1060)
T ss_pred HHHHHHHHc---------------------------CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHH
Confidence 766654321 1236666777777777777777777777777754 46677777
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCC-CceeeHHHHHHHHh
Q 005136 318 CFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDV-AHVVSWNSMIGGYG 396 (712)
Q Consensus 318 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 396 (712)
+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.++.+|++.|++++|..+|++|.+.+. |+..+|+.++.+|+
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~ 660 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG 660 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777766654 44455555555555
Q ss_pred ccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHH
Q 005136 397 LNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGK 476 (712)
Q Consensus 397 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 476 (712)
+.|++++| .++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++
T Consensus 661 k~G~~eeA-------------------------------~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~e 709 (1060)
T PLN03218 661 HAGDLDKA-------------------------------FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYED 709 (1060)
T ss_pred hCCCHHHH-------------------------------HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 54444444 89999999999999999999999999999999999999999
Q ss_pred HHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC----CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 005136 477 IIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP----DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNE 552 (712)
Q Consensus 477 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~ 552 (712)
|.+.|+.|+..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.+++.+|.+.|+.||.
T Consensus 710 M~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~ 789 (1060)
T PLN03218 710 IKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNL 789 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 9888889999999999999999999999999998875 578888999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC---CCCCCHHHHHHHHHH
Q 005136 553 LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM---PFEPDSNAWASLLSG 629 (712)
Q Consensus 553 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~ 629 (712)
.+|+.++..|. +.+++|..+.+.+. .+ .+ +......+..++|..+|++| ++.|+..+|..++.+
T Consensus 790 ~tynsLIglc~--~~y~ka~~l~~~v~-~f--~~--------g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~c 856 (1060)
T PLN03218 790 VMCRCITGLCL--RRFEKACALGEPVV-SF--DS--------GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGC 856 (1060)
T ss_pred HHHHHHHHHHH--HHHHHHhhhhhhhh-hh--hc--------cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Confidence 99988887654 24666665554443 11 11 11122234456799999998 678999999999988
Q ss_pred HhhcCCHHHHHHHHHHHh-ccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCc
Q 005136 630 CKTYKNEQIAERAVKNLW-KLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLRKSGG 690 (712)
Q Consensus 630 ~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~ 690 (712)
+...+..+.+..+++.+. .-.+.+..+|..|+..+.+. .++|..++++|.+.|+.|...
T Consensus 857 l~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 857 LQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 888888888888887654 33455678899999877322 368999999999999988765
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=8.5e-60 Score=510.22 Aligned_cols=466 Identities=24% Similarity=0.387 Sum_probs=427.7
Q ss_pred CCcchhhhHHHHHHhcCCChhHhHHHHhhcC-----CCCcchHHHHHHHHHhcCChHHHHHHHhhCC----CCChhHHHH
Q 005136 53 HKERYLTTRLLIMYLGSRKSLEANEIVKDLN-----GFDLVVHNCMINANIQWGNLEEAQRLFDGMP----ERNEVSWTA 123 (712)
Q Consensus 53 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ 123 (712)
..+...++.++..+.+.|++.+|.++|+.+. .||..+|+.++.++++.++++.|..++..|. .+|..+++.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3456688999999999999999999999883 4788999999999999999999999999886 479999999
Q ss_pred HHHHHHccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHH
Q 005136 124 LISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLG 203 (712)
Q Consensus 124 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a 203 (712)
|+.+|++.|++++|.++|++|+.||..+||.+|.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|...|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCcee
Q 005136 204 LSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVS 283 (712)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 283 (712)
.+++..+.+.|+.+|..+++.|+.+|++.|++++|.++|+ +|.++|+.+
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~-------------------------------~m~~~~~vt 292 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFD-------------------------------GMPEKTTVA 292 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHH-------------------------------hCCCCChhH
Confidence 9999999999999999999999999999999999999888 566678888
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 005136 284 WSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSK 363 (712)
Q Consensus 284 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 363 (712)
||.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..++++|+++|++
T Consensus 293 ~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k 372 (697)
T PLN03081 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 005136 364 CGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEML 443 (712)
Q Consensus 364 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 443 (712)
.|++++|.++|++|.+. +..+||.||.+|++.|+.++| .++|++|.
T Consensus 373 ~G~~~~A~~vf~~m~~~---d~~t~n~lI~~y~~~G~~~~A-------------------------------~~lf~~M~ 418 (697)
T PLN03081 373 WGRMEDARNVFDRMPRK---NLISWNALIAGYGNHGRGTKA-------------------------------VEMFERMI 418 (697)
T ss_pred CCCHHHHHHHHHhCCCC---CeeeHHHHHHHHHHcCCHHHH-------------------------------HHHHHHHH
Confidence 88888888888877643 356666666666666666665 99999999
Q ss_pred HCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHH-cCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC-CCCcchHH
Q 005136 444 LSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIK-LGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP-DKNEISWT 521 (712)
Q Consensus 444 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~ 521 (712)
+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++++++. +|+..+|+
T Consensus 419 ~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~ 498 (697)
T PLN03081 419 AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWA 498 (697)
T ss_pred HhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHH
Confidence 999999999999999999999999999999999986 6999999999999999999999999999999987 68999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC
Q 005136 522 VMVRGLAESGYAKESINLFEEMEKTSITPN-ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP 586 (712)
Q Consensus 522 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 586 (712)
+++.+|...|+++.|..+++++.+ +.|+ ..+|..++..|++.|++++|.++++.|.+ .|+..
T Consensus 499 ~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~-~g~~k 561 (697)
T PLN03081 499 ALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR-KGLSM 561 (697)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH-cCCcc
Confidence 999999999999999999999976 5665 57899999999999999999999999984 46654
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=7.5e-41 Score=382.86 Aligned_cols=670 Identities=13% Similarity=0.082 Sum_probs=418.0
Q ss_pred hhHHHHHhhcCcCCCCCCchhhHHHHHHHhhccchhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHHHHhh
Q 005136 2 KASLRSLFSINPETSFNSYIETCLCLLKDITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVKD 81 (712)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 81 (712)
++|.+.|+++ ... .|.+...+..+...+...|++++|..+++++++..+ .+...+..+...+...|++++|...|++
T Consensus 142 ~~A~~~~~~a-~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 218 (899)
T TIGR02917 142 ELAQKSYEQA-LAI-DPRSLYAKLGLAQLALAENRFDEARALIDEVLTADP-GNVDALLLKGDLLLSLGNIELALAAYRK 218 (899)
T ss_pred HHHHHHHHHH-Hhc-CCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5666666665 222 334555666666666777777777777776666543 3555566666666667777777766666
Q ss_pred c---CCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhHH----------------------------------
Q 005136 82 L---NGFDLVVHNCMINANIQWGNLEEAQRLFDGMPER---NEVSW---------------------------------- 121 (712)
Q Consensus 82 ~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~---------------------------------- 121 (712)
. .+.+..++..++..+...|++++|...++.+.+. +...+
T Consensus 219 a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~ 298 (899)
T TIGR02917 219 AIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPAL 298 (899)
T ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHH
Confidence 5 2234455666666666666666666666555331 11122
Q ss_pred HHHHHHHHccCChHHHHHHhhhCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccc
Q 005136 122 TALISGFMKHGRVEESMWYFERNP---FQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEIN 198 (712)
Q Consensus 122 ~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~ 198 (712)
..+...+...|++++|...|++.. +.+...+..+...+.+.|++++|...++.+.+.+ +.+...+..+...+...|
T Consensus 299 ~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 377 (899)
T TIGR02917 299 LLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALG 377 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCC
Confidence 222333344444444444444321 1223344444555555555555555555555432 223445555555555556
Q ss_pred chHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCCC---CcchHHHHHHHHHhcCCHHHHHHHHhh
Q 005136 199 DFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKR---DVVSWTVILDVFIEMGDLGEARRIFDE 275 (712)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~ 275 (712)
++++|.++++.+.+.. +.+...+..+...+...|++++|.+.++++.+. .......++..+.+.|++++|..+++.
T Consensus 378 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 456 (899)
T TIGR02917 378 DFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKK 456 (899)
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHH
Confidence 6666666655555443 223344455555555555555555555555431 122334455555666666666666665
Q ss_pred CCC---CCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHH
Q 005136 276 MPE---RNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVF 352 (712)
Q Consensus 276 ~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 352 (712)
+.. .++.+|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+..
T Consensus 457 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 534 (899)
T TIGR02917 457 LEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLR 534 (899)
T ss_pred HHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHH
Confidence 543 244456666666667777777777777666522 2234455556666666677777777777666543 23455
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCC---CCcccHHHHHHHHHhc
Q 005136 353 ISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPK---RNDVSWSAIISGYLEH 429 (712)
Q Consensus 353 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 429 (712)
++..+...+...|+.++|...++++...++.+...+..++..+...|++++|..+++.+.+ .+..+|..++.++...
T Consensus 535 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 614 (899)
T TIGR02917 535 AILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAA 614 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 6666667777777777777777777666666666666777777777777777777776653 2455677777777777
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHh
Q 005136 430 KQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVF 509 (712)
Q Consensus 430 ~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 509 (712)
|++++|...|+++.+.. +.+...+..+...+...|++++|..++.++.+.. +.+...+..++..+...|++++|..++
T Consensus 615 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 615 GDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777777776643 3345566666677777777777777777776543 344566667777777777777777777
Q ss_pred ccCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC
Q 005136 510 DRMPD---KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP 586 (712)
Q Consensus 510 ~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 586 (712)
+.+.+ .+...+..+...+...|++++|++.++++... .|+..++..+..++...|++++|.+.++.+.+. .|
T Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~---~~ 767 (899)
T TIGR02917 693 KSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT---HP 767 (899)
T ss_pred HHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CC
Confidence 76653 34445666777777778888888888777773 455566667777777778888888777777632 34
Q ss_pred -chHHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 005136 587 -NGRHYTCVVDMLSRSGRLSEAEDFINSM-PF-EPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNI 663 (712)
Q Consensus 587 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 663 (712)
+...+..++..|...|++++|...|+++ .. +++...+..+...+...|+ .+|..+++++++..|+++.++..++.+
T Consensus 768 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~ 846 (899)
T TIGR02917 768 NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWL 846 (899)
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 6677777777888888888888888776 22 3346666777777777777 668888888887778877777788888
Q ss_pred HHhcCCchhHHHHHHHHHhCCCc
Q 005136 664 YASAGRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 664 ~~~~g~~~eA~~~~~~~~~~~~~ 686 (712)
+.+.|++++|+++++++++.++.
T Consensus 847 ~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 847 LVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCC
Confidence 88888888888888887776543
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.8e-41 Score=383.19 Aligned_cols=667 Identities=14% Similarity=0.090 Sum_probs=540.5
Q ss_pred hhHHHHHhhcCcCCCCCCchhhHHHHHHHhhccchhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHHHHh-
Q 005136 2 KASLRSLFSINPETSFNSYIETCLCLLKDITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVK- 80 (712)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~- 80 (712)
++|.+.++++ .. ..|++...+..+...+...|+++.|...++++++..+. +..++..++..+...|++++|...++
T Consensus 176 ~~A~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~ 252 (899)
T TIGR02917 176 DEARALIDEV-LT-ADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPN-NPAVLLALATILIEAGEFEEAEKHADA 252 (899)
T ss_pred HHHHHHHHHH-HH-hCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4455555554 22 23444455555555555555555555555555554432 34444445555555555555554444
Q ss_pred ---------------------------------hcCC--CC-cchHHHHHHHHHhcCChHHHHHHHhhCCC---CChhHH
Q 005136 81 ---------------------------------DLNG--FD-LVVHNCMINANIQWGNLEEAQRLFDGMPE---RNEVSW 121 (712)
Q Consensus 81 ---------------------------------~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 121 (712)
+... |+ ...+..+..++...|++++|...|+++.+ .+...+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 332 (899)
T TIGR02917 253 LLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQAR 332 (899)
T ss_pred HHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 4321 11 22333445556667777777777776653 245567
Q ss_pred HHHHHHHHccCChHHHHHHhhhCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccc
Q 005136 122 TALISGFMKHGRVEESMWYFERNP---FQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEIN 198 (712)
Q Consensus 122 ~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~ 198 (712)
..+...+.+.|++++|...+++.. +.+...+..+...+.+.|++++|.++|+++.+.. +.+...+..+...+...|
T Consensus 333 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 411 (899)
T TIGR02917 333 RLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQG 411 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCC
Confidence 788889999999999999998754 3456788999999999999999999999998764 235667788888999999
Q ss_pred chHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHhh
Q 005136 199 DFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEK---RDVVSWTVILDVFIEMGDLGEARRIFDE 275 (712)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 275 (712)
++++|...++.+.+... ........++..+.+.|+++.|..+++++.+ ++..++..+...+...|++++|...|++
T Consensus 412 ~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 490 (899)
T TIGR02917 412 DPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEK 490 (899)
T ss_pred ChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999988763 3345566788889999999999999999875 4566899999999999999999999998
Q ss_pred CCC---CCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHH
Q 005136 276 MPE---RNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVF 352 (712)
Q Consensus 276 ~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 352 (712)
+.+ .+...+..+...+...|++++|.+.|+.+...+ +.+..++..+...+.+.|+.++|...+..+...+ +.+..
T Consensus 491 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 568 (899)
T TIGR02917 491 ALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIE 568 (899)
T ss_pred HHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchh
Confidence 764 345567788889999999999999999998743 4467788889999999999999999999998764 34667
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCC---CCcccHHHHHHHHHhc
Q 005136 353 ISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPK---RNDVSWSAIISGYLEH 429 (712)
Q Consensus 353 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 429 (712)
.+..++..|...|++++|..+++.+.+..+.+...|..+...+...|++++|+..++.+.+ .++..+..++.++...
T Consensus 569 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 648 (899)
T TIGR02917 569 PALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVM 648 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 7888999999999999999999999988888888999999999999999999999998763 3566789999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHh
Q 005136 430 KQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVF 509 (712)
Q Consensus 430 ~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 509 (712)
|++++|...|+++.... +.+..++..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...|
T Consensus 649 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~ 726 (899)
T TIGR02917 649 KNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAY 726 (899)
T ss_pred CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999998763 4567888999999999999999999999998875 567778888999999999999999999
Q ss_pred ccCC--CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-
Q 005136 510 DRMP--DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP- 586 (712)
Q Consensus 510 ~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p- 586 (712)
+.+. .|+..++..++.++...|++++|.+.++++.+. .+.+...+..+...|...|++++|..+|+++.+. .|
T Consensus 727 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~ 802 (899)
T TIGR02917 727 RKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK---APD 802 (899)
T ss_pred HHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh---CCC
Confidence 9876 355577888899999999999999999999985 2445678888899999999999999999999843 45
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIY 664 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 664 (712)
+...+..++..+...|+ .+|+.+++++ ...|+ +..+..+...+...|++++|...++++++..|.++.++..++.++
T Consensus 803 ~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 881 (899)
T TIGR02917 803 NAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALAL 881 (899)
T ss_pred CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 78889999999999999 8899999987 44444 566777888899999999999999999999999999999999999
Q ss_pred HhcCCchhHHHHHHHHHh
Q 005136 665 ASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 665 ~~~g~~~eA~~~~~~~~~ 682 (712)
.+.|++++|++++++|++
T Consensus 882 ~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 882 LATGRKAEARKELDKLLN 899 (899)
T ss_pred HHcCCHHHHHHHHHHHhC
Confidence 999999999999999864
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.5e-28 Score=277.97 Aligned_cols=631 Identities=12% Similarity=0.035 Sum_probs=442.8
Q ss_pred hHHHHHHHhhccchhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHHHHhhcCC--CCcc-hH---------
Q 005136 23 TCLCLLKDITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVKDLNG--FDLV-VH--------- 90 (712)
Q Consensus 23 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~-~~--------- 90 (712)
....-++.+...++.+.|.+.+.+++...+. ++.++..++..+...|+.++|.+.+++..+ |+.. ..
T Consensus 30 ~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~-~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 30 QLLEQVRLGEATHREDLVRQSLYRLELIDPN-NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHccCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc
Confidence 3455666677888888898888888877644 677778888888899999999988888733 3322 11
Q ss_pred -------HHHHHHHHhcCChHHHHHHHhhCCCCChhHHH----HHHHHHHccCChHHHHHHhhhCCC---CCcccHHHHH
Q 005136 91 -------NCMINANIQWGNLEEAQRLFDGMPERNEVSWT----ALISGFMKHGRVEESMWYFERNPF---QNVISWTAAI 156 (712)
Q Consensus 91 -------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li 156 (712)
..+...+...|++++|...|+++.+.++.... .+.......|+.++|++.++++.. .+...+..+.
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA 188 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLA 188 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 22334567788888888888887653222111 111222345888888888877543 3455677778
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChH
Q 005136 157 CGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVD 236 (712)
Q Consensus 157 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 236 (712)
..+...|++++|+..++++.+.... +...-......+...+....+.. .+...+..+-.....+
T Consensus 189 ~ll~~~g~~~eAl~~l~~~~~~~~~-~~~aa~~~~~~l~~~~~~~~~~~---------------~l~~~l~~~p~~~~~~ 252 (1157)
T PRK11447 189 LLLFSSGRRDEGFAVLEQMAKSPAG-RDAAAQLWYGQIKDMPVSDASVA---------------ALQKYLQVFSDGDSVA 252 (1157)
T ss_pred HHHHccCCHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHhccCCChhhHH---------------HHHHHHHHCCCchHHH
Confidence 8888888888888888887653210 00000000111111111112222 2222222222223334
Q ss_pred HHHHHHhhcCC--CCcch-HHHHHHHHHhcCCHHHHHHHHhhCCC---CCceeHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 005136 237 LARSVFDRMEK--RDVVS-WTVILDVFIEMGDLGEARRIFDEMPE---RNEVSWSVMIARYNQSGYPEEAFRLFRQMTRY 310 (712)
Q Consensus 237 ~a~~~~~~~~~--~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 310 (712)
.|...+.+... .++.. .......+...|++++|+..|++..+ .+..++..+...+.+.|++++|+..|++..+.
T Consensus 253 ~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~ 332 (1157)
T PRK11447 253 AARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALAL 332 (1157)
T ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45555544322 11111 12334556677888888888877654 35567778888888888888888888888763
Q ss_pred CCCC-CHHHH------------HHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhh
Q 005136 311 SFKP-NTSCF------------SIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSI 377 (712)
Q Consensus 311 ~~~p-~~~~~------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 377 (712)
.-.. ....+ ......+.+.|++++|...++.+.+.. +.+...+..+..++...|++++|+..|+++
T Consensus 333 ~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~a 411 (1157)
T PRK11447 333 DPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQA 411 (1157)
T ss_pred CCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3111 11111 122345667899999999999988874 335667778889999999999999999999
Q ss_pred hcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCC------------cccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 005136 378 VEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRN------------DVSWSAIISGYLEHKQFDLVFAVFNEMLLS 445 (712)
Q Consensus 378 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 445 (712)
.+..+.+..++..+...+. .++.++|+..++.+.... ...+..+...+...|++++|+..|++.++.
T Consensus 412 L~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~ 490 (1157)
T PRK11447 412 LRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL 490 (1157)
T ss_pred HHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9888777777777777774 457889988888776321 224556778888999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCC----c----
Q 005136 446 GEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKN----E---- 517 (712)
Q Consensus 446 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~---- 517 (712)
. +-+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...++.++|...++.+.... .
T Consensus 491 ~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~ 568 (1157)
T PRK11447 491 D-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELA 568 (1157)
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHH
Confidence 4 3355677778889999999999999999988753 3345555555666778899999999999886421 1
Q ss_pred -----chHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHH
Q 005136 518 -----ISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHY 591 (712)
Q Consensus 518 -----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~ 591 (712)
..+..+...+...|+.++|+++++. .+++...+..+...+.+.|++++|+..|+++.+ ..| +...+
T Consensus 569 ~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~ 640 (1157)
T PRK11447 569 QRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADAR 640 (1157)
T ss_pred HHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHH
Confidence 1123456678899999999999872 344556677888899999999999999999983 367 78899
Q ss_pred HHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCc------hHHHHHHH
Q 005136 592 TCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPA------GYVLLSNI 663 (712)
Q Consensus 592 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~ 663 (712)
..++.+|...|++++|++.++.. ...|+ ...+..+..++...|++++|.+.++++++..|+++. ++..++.+
T Consensus 641 ~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~ 720 (1157)
T PRK11447 641 LGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARF 720 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHH
Confidence 99999999999999999999987 34454 556667777888999999999999999998776553 66778999
Q ss_pred HHhcCCchhHHHHHHHHHh
Q 005136 664 YASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 664 ~~~~g~~~eA~~~~~~~~~ 682 (712)
+...|++++|+..+++.+.
T Consensus 721 ~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 721 EAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999864
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=1e-26 Score=264.74 Aligned_cols=629 Identities=10% Similarity=0.016 Sum_probs=370.0
Q ss_pred hhHHHHHhhcCcCCCCCCchhhHHHHHHHhhccchhhhhhhHHHHHHHhCCCCcchh---------------hhHHHHHH
Q 005136 2 KASLRSLFSINPETSFNSYIETCLCLLKDITSQNLVIQGRALHGHLIKTGIHKERYL---------------TTRLLIMY 66 (712)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---------------~~~l~~~~ 66 (712)
+.|.+.+.++ ..--|.++..+..+++.+...|+.++|.+.++++.+..++..... ...+++.+
T Consensus 45 d~a~~~l~kl--~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll 122 (1157)
T PRK11447 45 DLVRQSLYRL--ELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLL 122 (1157)
T ss_pred HHHHHHHHHH--HccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 5677778877 233456778888999999999999999999999999885432211 13345578
Q ss_pred hcCCChhHhHHHHhhcCC--CCcch--HHHHHHHHHhcCChHHHHHHHhhCCCC---ChhHHHHHHHHHHccCChHHHHH
Q 005136 67 LGSRKSLEANEIVKDLNG--FDLVV--HNCMINANIQWGNLEEAQRLFDGMPER---NEVSWTALISGFMKHGRVEESMW 139 (712)
Q Consensus 67 ~~~~~~~~a~~~~~~~~~--~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~ 139 (712)
...|++++|...|++..+ |+... ...........|+.++|...|+++.+. +...+..+...+.+.|++++|..
T Consensus 123 ~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~ 202 (1157)
T PRK11447 123 ATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFA 202 (1157)
T ss_pred HhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 999999999999999843 22221 111122223469999999999998863 45578889999999999999999
Q ss_pred HhhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-hhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCC
Q 005136 140 YFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNE-VTFSSICKACAEINDFRLGLSVFGLIFKAGFEKH 218 (712)
Q Consensus 140 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 218 (712)
.++++...... +...+...++.+...+..|.. ..+...+..+......+.+...+.........|.
T Consensus 203 ~l~~~~~~~~~-------------~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~ 269 (1157)
T PRK11447 203 VLEQMAKSPAG-------------RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPA 269 (1157)
T ss_pred HHHHHhhCCCc-------------hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcc
Confidence 99886432110 001111111111111111111 1111112222222222333333333322211111
Q ss_pred ccHHHHHHHHHHccCChHHHHHHHhhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHhhCCC--CCce---eHH-----
Q 005136 219 VSVCNSLITLSLKMGEVDLARSVFDRMEK--R-DVVSWTVILDVFIEMGDLGEARRIFDEMPE--RNEV---SWS----- 285 (712)
Q Consensus 219 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~---~~~----- 285 (712)
.. .......+...|++++|...|++..+ | +...+..+...+.+.|++++|+..|++..+ |+.. .|.
T Consensus 270 ~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 270 FR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV 348 (1157)
T ss_pred hH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh
Confidence 11 11222333444455555555444433 1 233444444444455555555554444432 1110 011
Q ss_pred -------HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHH
Q 005136 286 -------VMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALI 358 (712)
Q Consensus 286 -------~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 358 (712)
.....+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.++.+.+.. +.+...+..+.
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~ 426 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLA 426 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 11223445566666666666655521 1233444445555555566666666666655542 12233444444
Q ss_pred HHHHhcCChHHHHHHHHhhhcCCC---------CceeeHHHHHHHHhccCChhhHHHHhhcCCC--C-CcccHHHHHHHH
Q 005136 359 DLYSKCGETKDGRLVFDSIVEKDV---------AHVVSWNSMIGGYGLNGQMEEAKELFDNMPK--R-NDVSWSAIISGY 426 (712)
Q Consensus 359 ~~~~~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~ 426 (712)
..|. .++.++|..+++.+..... -....+..+...+...|++++|++.+++..+ | ++..+..+...|
T Consensus 427 ~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~ 505 (1157)
T PRK11447 427 NLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDL 505 (1157)
T ss_pred HHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4443 3345556555554432211 0122344555556666666666666665543 2 333455566666
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCch---------hhHHHHHHHHH
Q 005136 427 LEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDV---------FLGTALTDTYA 497 (712)
Q Consensus 427 ~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~~~ 497 (712)
.+.|++++|...++++.... +.+...+..+...+...++.++|...++.+......+.. ..+..+...+.
T Consensus 506 ~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 66666666677776666532 223333333333445566666666666554322111111 12234567788
Q ss_pred hcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHH
Q 005136 498 KSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFN 576 (712)
Q Consensus 498 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 576 (712)
..|+.++|..+++.- ..+...+..+...+.+.|++++|++.|++..+. .| +...+..+...+...|++++|++.++
T Consensus 585 ~~G~~~eA~~~l~~~-p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 585 DSGKEAEAEALLRQQ-PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred HCCCHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999843 345567788899999999999999999999984 55 45778889999999999999999999
Q ss_pred hcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCC---C----CHHHHHHHHHHHhhcCCHHHHHHHHHHHh
Q 005136 577 SMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFE---P----DSNAWASLLSGCKTYKNEQIAERAVKNLW 647 (712)
Q Consensus 577 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~---p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 647 (712)
.+. ...| +......++.++...|++++|.++++++ ... | +...+..+...+...|+.++|+..+++++
T Consensus 662 ~ll---~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 662 KLP---ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHh---ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 887 3456 5677788899999999999999999987 222 2 12345556777889999999999999998
Q ss_pred c---cCCCCCch
Q 005136 648 K---LAEEHPAG 656 (712)
Q Consensus 648 ~---~~p~~~~~ 656 (712)
. +.|..|..
T Consensus 739 ~~~~~~~~~p~~ 750 (1157)
T PRK11447 739 VASGITPTRPQD 750 (1157)
T ss_pred hhcCCCCCCCCC
Confidence 5 34554443
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=1.4e-25 Score=242.94 Aligned_cols=619 Identities=9% Similarity=-0.022 Sum_probs=428.6
Q ss_pred ccchhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHHHHhhcCC--CCcchHHHHHHHHHhcCChHHHHHHH
Q 005136 33 SQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVKDLNG--FDLVVHNCMINANIQWGNLEEAQRLF 110 (712)
Q Consensus 33 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~ 110 (712)
..|++.+|...+..+++..+.- ..++..|+..|...|+.++|+..+++... |+-..|..++..+ +++++|..++
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHH
Confidence 3488999999999999888764 78888899999999999999999998844 3323333333222 8888999999
Q ss_pred hhCCC--C-ChhHHHHHHHH--------HHccCChHHHHHHhhhCCCC--CcccHHHH-HHHHHhcCChhHHHHHHHHHH
Q 005136 111 DGMPE--R-NEVSWTALISG--------FMKHGRVEESMWYFERNPFQ--NVISWTAA-ICGFVQNGFSFEALKLFLKLL 176 (712)
Q Consensus 111 ~~~~~--~-~~~~~~~l~~~--------~~~~g~~~~a~~~~~~~~~~--~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~ 176 (712)
+++.+ | +..++..+... |.+.+...++++ .+...+ +..+.... ...|.+.|+|++|++++.++.
T Consensus 132 e~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 132 EELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 98875 2 34555555555 777766666666 333333 34434444 888999999999999999999
Q ss_pred HcCCCCCHhhHHHHHHHHhc-ccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCC-----CCc
Q 005136 177 ESGVKPNEVTFSSICKACAE-INDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEK-----RDV 250 (712)
Q Consensus 177 ~~g~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~ 250 (712)
+.+.. +......+..++.. .++ +.+..+++. .++.++.....++..+.+.|+.+.|.++++++.. |+.
T Consensus 210 k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~ 283 (987)
T PRK09782 210 QQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQE 283 (987)
T ss_pred hcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCcc
Confidence 87543 44445666667666 355 666666442 3346778888899999999999999999998874 333
Q ss_pred chHHHHHHHHHhcCCHH-HHHHHHhh-CCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-
Q 005136 251 VSWTVILDVFIEMGDLG-EARRIFDE-MPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALA- 327 (712)
Q Consensus 251 ~~~~~ll~~~~~~~~~~-~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~- 327 (712)
.+| +.-+.+.+... .|..-|.+ ....-....-.++..+.+.++++.+.++.. +.|..... .+....
T Consensus 284 ~~~---~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~--~~r~~~~ 352 (987)
T PRK09782 284 KSW---LYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEML--EERYAVS 352 (987)
T ss_pred HHH---HHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHH--HHHHhhc
Confidence 333 22233433332 11111111 000011122333666777777775554421 33433322 222222
Q ss_pred -ccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCC---CceeeHHHHHHHHhccCC---
Q 005136 328 -SLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDV---AHVVSWNSMIGGYGLNGQ--- 400 (712)
Q Consensus 328 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~--- 400 (712)
..+...++...+..+.+.. +-+......+.-...+.|+.++|..+|+....... .+....+.++..|.+.+.
T Consensus 353 ~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 431 (987)
T PRK09782 353 VATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLAT 431 (987)
T ss_pred cccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccc
Confidence 3356666666666666542 22444444555556777888888888887766321 223344456666666555
Q ss_pred hhhHHHHhh-------------------------cCCC---C--CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 005136 401 MEEAKELFD-------------------------NMPK---R--NDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPN 450 (712)
Q Consensus 401 ~~~a~~~~~-------------------------~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~ 450 (712)
..++..+.. .... + +...|..+..++.. +++++|...+.+.... .|+
T Consensus 432 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd 508 (987)
T PRK09782 432 PAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPD 508 (987)
T ss_pred hHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCc
Confidence 333333211 1111 2 45567888888877 8899999988887765 366
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHH---HHH
Q 005136 451 KSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMV---RGL 527 (712)
Q Consensus 451 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~---~~~ 527 (712)
......+...+...|++++|...++++... +|+......+...+.+.|++++|...++...+.++....... ...
T Consensus 509 ~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l 586 (987)
T PRK09782 509 AWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQR 586 (987)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 555445555667899999999999987654 444445667778889999999999999988765444333333 333
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHH
Q 005136 528 AESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSE 606 (712)
Q Consensus 528 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 606 (712)
...|++++|+..+++..+ +.|+...+..+..++.+.|++++|+..|++.. ...| +...+..++.++...|++++
T Consensus 587 ~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL---~l~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 587 YIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAAL---ELEPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 445999999999999998 67888888899999999999999999999998 4577 67888999999999999999
Q ss_pred HHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 607 AEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 607 A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
|+..+++. ...|+ ...+..+..++...|++++|+..+++++++.|++..+....+++..+..+++.|.+.+++.-.-+
T Consensus 662 Ai~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 662 SREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999987 55564 67788888889999999999999999999999999999999999999999999999888776544
Q ss_pred C
Q 005136 685 L 685 (712)
Q Consensus 685 ~ 685 (712)
+
T Consensus 742 ~ 742 (987)
T PRK09782 742 F 742 (987)
T ss_pred c
Confidence 3
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=8.7e-24 Score=229.07 Aligned_cols=590 Identities=11% Similarity=0.035 Sum_probs=418.6
Q ss_pred HHHhcCCChhHhHHHHhhcC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCCh--hHHHHHHHHHHccCChHHHH
Q 005136 64 IMYLGSRKSLEANEIVKDLN---GFDLVVHNCMINANIQWGNLEEAQRLFDGMPERNE--VSWTALISGFMKHGRVEESM 138 (712)
Q Consensus 64 ~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~ 138 (712)
..+...|++++|...|++.. +.+..++..+...+...|+.++|+..+++..+.++ ..+..++..+ +++++|.
T Consensus 52 ~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~ 128 (987)
T PRK09782 52 LKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSV 128 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHH
Confidence 34455599999999999873 34567889999999999999999999999876433 3333333222 8999999
Q ss_pred HHhhhCC---CCCcccHHHHHHH--------HHhcCChhHHHHHHHHHHHcCCCCCHhhHHHH-HHHHhcccchHHHHHH
Q 005136 139 WYFERNP---FQNVISWTAAICG--------FVQNGFSFEALKLFLKLLESGVKPNEVTFSSI-CKACAEINDFRLGLSV 206 (712)
Q Consensus 139 ~~~~~~~---~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-~~~~~~~~~~~~a~~~ 206 (712)
.+++++. +.+...+..+... |.+. ++|.+.++ .......|+....... .+.+...++++.|...
T Consensus 129 ~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 129 TTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 9998864 2345555555555 5555 45555554 3333344455555555 8899999999999999
Q ss_pred HHHHHHhCCCCCccHHHHHHHHHHc-cCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC
Q 005136 207 FGLIFKAGFEKHVSVCNSLITLSLK-MGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPE-----RN 280 (712)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~ 280 (712)
+..+.+.+ +.+......|..+|.. .++ +.+..+++...+.++..+..+...+.+.|+.++|..+++++.. |+
T Consensus 205 L~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~ 282 (987)
T PRK09782 205 YNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQ 282 (987)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCc
Confidence 99999987 4445556677777877 466 8888887765567888899999999999999999999999874 33
Q ss_pred ceeHHHHHHHHHhcCChh-HHHHHHHHHHhCCCCCCHH-HHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHH
Q 005136 281 EVSWSVMIARYNQSGYPE-EAFRLFRQMTRYSFKPNTS-CFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALI 358 (712)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~-~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 358 (712)
..+|--+ +.+.+... .|..-|.+ ...++.. ....++..+.+.+.++.+.++.. +.|..... .+
T Consensus 283 ~~~~~~~---l~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~--~~ 347 (987)
T PRK09782 283 EKSWLYL---LSKYSANPVQALANYTV----QFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEML--EE 347 (987)
T ss_pred cHHHHHH---HHhccCchhhhccchhh----hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHH--HH
Confidence 3333333 34444332 11111111 0111111 12223566677788886665522 33333332 33
Q ss_pred HHH--HhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCC-C-C----cccHHHHHHHHHhcC
Q 005136 359 DLY--SKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPK-R-N----DVSWSAIISGYLEHK 430 (712)
Q Consensus 359 ~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~----~~~~~~l~~~~~~~~ 430 (712)
+.. ...+...++...+..+....+.+......+.-...+.|+.++|.++++.... + + ......++..|.+.+
T Consensus 348 r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 427 (987)
T PRK09782 348 RYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHP 427 (987)
T ss_pred HHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCC
Confidence 322 2347778888888888887666666666666677889999999999998875 2 2 224457778887776
Q ss_pred C---hhHHHHH------------HH----------HHHH-CCC-CC--CHHHHHHHHHHHhccCchHHHHHHHHHHHHcC
Q 005136 431 Q---FDLVFAV------------FN----------EMLL-SGE-IP--NKSTFSSVLCASASVASLEKGKDLHGKIIKLG 481 (712)
Q Consensus 431 ~---~~~a~~~------------~~----------~~~~-~g~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 481 (712)
. ..++..+ .. .... .+. ++ +...+..+..++.. ++.++|...+.+.....
T Consensus 428 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~ 506 (987)
T PRK09782 428 YLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ 506 (987)
T ss_pred cccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC
Confidence 6 3343333 11 1111 112 23 45566666666655 78888999887777653
Q ss_pred CCCchhhHHHHHHHHHhcCChHHHHHHhccCCC--CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHH
Q 005136 482 FPYDVFLGTALTDTYAKSGDIESSRRVFDRMPD--KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNE-LTILSV 558 (712)
Q Consensus 482 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l 558 (712)
|+......+...+...|++++|...++++.. ++...+..+...+.+.|+.++|...+++.++. .|+. ..+..+
T Consensus 507 --Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~L 582 (987)
T PRK09782 507 --PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWL 582 (987)
T ss_pred --CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHH
Confidence 4444444455556789999999999997763 44556777788899999999999999999985 4544 333344
Q ss_pred HHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCH
Q 005136 559 LFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNE 636 (712)
Q Consensus 559 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~ 636 (712)
.......|++++|...+++.. ...|+...+..++.++.+.|++++|...+++. ...|+ ...+..+...+...|+.
T Consensus 583 a~~l~~~Gr~~eAl~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~ 659 (987)
T PRK09782 583 HAQRYIPGQPELALNDLTRSL---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDI 659 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 445566799999999999998 45788889999999999999999999999998 55665 56667777789999999
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 637 QIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 637 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
++|+..++++++..|+++.++..++.++...|++++|+..+++.++..+
T Consensus 660 eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 660 AQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999988653
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=6e-23 Score=196.57 Aligned_cols=439 Identities=15% Similarity=0.212 Sum_probs=361.2
Q ss_pred HHHHHHHHHccCChHHHHHHHhhcCCCCc---chHHHHHHHHHhcCCHHHHHHHHhhCCCC---CceeHHHHHHHHHhcC
Q 005136 222 CNSLITLSLKMGEVDLARSVFDRMEKRDV---VSWTVILDVFIEMGDLGEARRIFDEMPER---NEVSWSVMIARYNQSG 295 (712)
Q Consensus 222 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~ 295 (712)
...|..-..+.|++..|.+....+-..|. ...-.+-.++.+..+++....--....+. -..+|..+...+-..|
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 34555566678888888888776654222 22223334555555565554433333332 3458889999999999
Q ss_pred ChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHH-HHHHHHHHHHhcCChHHHHHH
Q 005136 296 YPEEAFRLFRQMTRYSFKP-NTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVF-ISNALIDLYSKCGETKDGRLV 373 (712)
Q Consensus 296 ~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~ 373 (712)
++++|+.+|+.+++ ++| ....|..+..++...|+.+.|.+.+.+.++.+ |+.. ..+.+.......|++.+|...
T Consensus 131 ~~~~al~~y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 131 QLQDALALYRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hHHHHHHHHHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHH
Confidence 99999999999998 455 56788999999999999999999999988764 5543 344566677788999999999
Q ss_pred HHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCC---cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 005136 374 FDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRN---DVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPN 450 (712)
Q Consensus 374 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~ 450 (712)
+.+..+..+.-..+|+.|...+-.+|+.-.|+..|++..+-| ...|-.|...|...+.+++|...|.+.... .|+
T Consensus 207 YlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn 284 (966)
T KOG4626|consen 207 YLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPN 284 (966)
T ss_pred HHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCc
Confidence 999998888888999999999999999999999999988654 457999999999999999999999998774 455
Q ss_pred -HHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC---CCcchHHHHHHH
Q 005136 451 -KSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPD---KNEISWTVMVRG 526 (712)
Q Consensus 451 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 526 (712)
...+..+...|-.+|.++.|+..+++..+.. +.=+..|+.|..++...|++.+|...+++... ....+.+.|...
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni 363 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNI 363 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 4567777778889999999999999998753 22356899999999999999999999998773 345578889999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCc-hHHHHHHHHHhhhcCCh
Q 005136 527 LAESGYAKESINLFEEMEKTSITPNE-LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPN-GRHYTCVVDMLSRSGRL 604 (712)
Q Consensus 527 ~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 604 (712)
+...|.+++|..+|....+ +.|.. ..++.|...|-..|++++|+..|++.. .++|+ ...++.++..|-..|+.
T Consensus 364 ~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhH
Confidence 9999999999999999998 77765 678899999999999999999999998 67894 77999999999999999
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchh
Q 005136 605 SEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWID 672 (712)
Q Consensus 605 ~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~e 672 (712)
+.|...+.+. .+.|. ......+...|...|+..+|++.++.+++++||.|.++..|+-++.--..|.+
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 9999999987 67787 66778888889999999999999999999999999999999988765555554
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.93 E-value=4e-21 Score=194.18 Aligned_cols=516 Identities=13% Similarity=0.100 Sum_probs=302.7
Q ss_pred HhcCChhHHHHHHHHHHHcC--CCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCC---
Q 005136 160 VQNGFSFEALKLFLKLLESG--VKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGE--- 234 (712)
Q Consensus 160 ~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--- 234 (712)
...|++..|+.+|....... .+||+. ..+..++.+.++.+.|...|...++.++ .++.++-.|...-....+
T Consensus 175 ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s 251 (1018)
T KOG2002|consen 175 YNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDS 251 (1018)
T ss_pred hccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHH
Confidence 34566666666666654432 223332 1223444566666666666666665542 233333333333223333
Q ss_pred hHHHHHHHhhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCC------ceeHHHHHHHHHhcCChhHHHHHHH
Q 005136 235 VDLARSVFDRMEK---RDVVSWTVILDVFIEMGDLGEARRIFDEMPERN------EVSWSVMIARYNQSGYPEEAFRLFR 305 (712)
Q Consensus 235 ~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (712)
+..+..++...-+ .+++..+.|.+.+.-.|++..++.+...+.... ...|-.+.++|-..|++++|...|.
T Consensus 252 ~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~ 331 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM 331 (1018)
T ss_pred HHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 2333333333322 455666666666666677666666666554321 1235556667777777777777776
Q ss_pred HHHhCCCCCCH--HHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC----ChHHHHHHHHhhhc
Q 005136 306 QMTRYSFKPNT--SCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCG----ETKDGRLVFDSIVE 379 (712)
Q Consensus 306 ~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~ 379 (712)
+..+ ..|+. ..+.-+...+.+.|+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..++.+..+
T Consensus 332 ~s~k--~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~ 408 (1018)
T KOG2002|consen 332 ESLK--ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE 408 (1018)
T ss_pred HHHc--cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh
Confidence 6554 33333 223345556666777777777777766653 224455555555565554 45666666666666
Q ss_pred CCCCceeeHHHHHHHHhccCCh------hhHHHHhhcCC-CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCC
Q 005136 380 KDVAHVVSWNSMIGGYGLNGQM------EEAKELFDNMP-KRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLS---GEIP 449 (712)
Q Consensus 380 ~~~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---g~~p 449 (712)
..+.+..+|-.+...+....-+ ..|..++.... ...+...|.+...+...|++..|...|...... -..+
T Consensus 409 ~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~ 488 (1018)
T KOG2002|consen 409 QTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK 488 (1018)
T ss_pred cccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc
Confidence 6666666776666666554433 23333332222 245566777777777777777777777776544 1122
Q ss_pred CH------HHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchH
Q 005136 450 NK------STFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISW 520 (712)
Q Consensus 450 ~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~ 520 (712)
+. .+--.+.......++.+.|.+.+..+.+.. +.-+..|-.+..+....+...+|...++... ..++..|
T Consensus 489 de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~ar 567 (1018)
T KOG2002|consen 489 DEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNAR 567 (1018)
T ss_pred cccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHH
Confidence 22 122233444555667777777777777642 2223334444433334466777777777665 3456667
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhcc------------cCcHHHHHHHHHhcchhcCCCC-
Q 005136 521 TVMVRGLAESGYAKESINLFEEMEKTS-ITPNELTILSVLFACSH------------SGLVDKGLKYFNSMEPIYNIKP- 586 (712)
Q Consensus 521 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~------------~g~~~~a~~~~~~~~~~~~~~p- 586 (712)
+.+...+.....+..|.+-|....+.- ..+|..+...|...|.. .+..++|+++|.++. ...|
T Consensus 568 sl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL---~~dpk 644 (1018)
T KOG2002|consen 568 SLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVL---RNDPK 644 (1018)
T ss_pred HHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHH---hcCcc
Confidence 766667777777777777665554432 12455555555554431 244667777777776 3355
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC--CCCCchHHHHHH
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSMP--FEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLA--EEHPAGYVLLSN 662 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~ 662 (712)
|...-+-++-+++..|++.+|..+|.+.. ......+|.++..+|..+|++-.|+++|+.+++.. .+++.++..|+.
T Consensus 645 N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lar 724 (1018)
T KOG2002|consen 645 NMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLAR 724 (1018)
T ss_pred hhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 67777777777788888888888887763 12345677777788888888888888888877653 345777788888
Q ss_pred HHHhcCCchhHHHHHHHHHhCCC
Q 005136 663 IYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 663 ~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
++.+.|++.+|.+.+.......+
T Consensus 725 a~y~~~~~~eak~~ll~a~~~~p 747 (1018)
T KOG2002|consen 725 AWYEAGKLQEAKEALLKARHLAP 747 (1018)
T ss_pred HHHHhhhHHHHHHHHHHHHHhCC
Confidence 88888888888887776665443
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.91 E-value=4.7e-20 Score=186.58 Aligned_cols=552 Identities=12% Similarity=0.101 Sum_probs=337.1
Q ss_pred hhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHHHHhhc--CCCC--cchHHHHHHHHHhcCChHHHHHHHhh
Q 005136 37 VIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVKDL--NGFD--LVVHNCMINANIQWGNLEEAQRLFDG 112 (712)
Q Consensus 37 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 112 (712)
++.|.+.|...++..+. +...+-.-+......|++..|..+|... ..|. +...-.+..++.+.|+.+.|+..|.+
T Consensus 146 ~~~A~a~F~~Vl~~sp~-Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~r 224 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPD-NILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFER 224 (1018)
T ss_pred HHHHHHHHHHHHhhCCc-chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHH
Confidence 45566666555555432 3333322333334556666666666663 1121 11222333455566666666666666
Q ss_pred CCCCChhHHHHHHHHH---H---ccCChHHHHHHhhh---CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--
Q 005136 113 MPERNEVSWTALISGF---M---KHGRVEESMWYFER---NPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVK-- 181 (712)
Q Consensus 113 ~~~~~~~~~~~l~~~~---~---~~g~~~~a~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-- 181 (712)
..+-|+...++++... . ....+..+..++.+ ....|+.+.+.|..-|.-.|++..+..+..-+......
T Consensus 225 alqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~ 304 (1018)
T KOG2002|consen 225 ALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKS 304 (1018)
T ss_pred HHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhH
Confidence 6654443322222211 1 12234444555443 22356667777777777777777777777777654311
Q ss_pred CCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCC--C-CcchHHHHHH
Q 005136 182 PNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEK--R-DVVSWTVILD 258 (712)
Q Consensus 182 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~ll~ 258 (712)
.-...|..+.+++...|+++.|...|.+.++.........+-.+...+.+.|+.+.+...|+.+.+ | +..+...|..
T Consensus 305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~ 384 (1018)
T KOG2002|consen 305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGC 384 (1018)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 123457777788888888888888887776655333344555667777788888888888887765 2 3345555555
Q ss_pred HHHhcC----CHHHHHHHHhhCCCC---CceeHHHHHHHHHhcCChhHHHHHHHHH----HhCCCCCCHHHHHHHHHHHh
Q 005136 259 VFIEMG----DLGEARRIFDEMPER---NEVSWSVMIARYNQSGYPEEAFRLFRQM----TRYSFKPNTSCFSIVLSALA 327 (712)
Q Consensus 259 ~~~~~~----~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m----~~~~~~p~~~~~~~ll~~~~ 327 (712)
.|+..+ ..+.|..++.+..++ |..+|-.+...+... ++..++..|... ...+-.+.+...|.+.....
T Consensus 385 Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf 463 (1018)
T KOG2002|consen 385 LYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHF 463 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHH
Confidence 665554 456666666666553 444565555555443 344446665543 34455567777888888888
Q ss_pred ccCChhhHHHHHHHHHHc---CCCCc------HHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhcc
Q 005136 328 SLKALRSGMHVHAHVLKI---GIEKD------VFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLN 398 (712)
Q Consensus 328 ~~~~~~~a~~~~~~~~~~---~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 398 (712)
..|++..|...+...... ...++ ..+-..+..+.-..++++.|.+.|..+....|.-+..|-.++......
T Consensus 464 ~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k 543 (1018)
T KOG2002|consen 464 RLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDK 543 (1018)
T ss_pred HhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhc
Confidence 888888888888877654 11222 223344566666777888888999888888866666666665444445
Q ss_pred CChhhHHHHhhcCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCchHHHHHHH
Q 005136 399 GQMEEAKELFDNMPK---RNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSG-EIPNKSTFSSVLCASASVASLEKGKDLH 474 (712)
Q Consensus 399 ~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 474 (712)
+...+|..++..... .++..+..+...|.+...+..|..-|....+.- ..+|..+...|...|.
T Consensus 544 ~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~------------ 611 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYI------------ 611 (1018)
T ss_pred cCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHH------------
Confidence 677778777777653 466677777778888888877777666655432 2244444443333221
Q ss_pred HHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 005136 475 GKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPD---KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPN 551 (712)
Q Consensus 475 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~ 551 (712)
+.+....-.| -...+..+.|.++|.++.+ .|...-|.+.-.++..|++.+|..+|.+.++.. ...
T Consensus 612 ~~l~~~~rn~-----------ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~ 679 (1018)
T KOG2002|consen 612 QALHNPSRNP-----------EKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDF 679 (1018)
T ss_pred HHhcccccCh-----------HHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhC
Confidence 1111100000 1223456677777776653 344555667777788888888888888887763 234
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC
Q 005136 552 ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM 614 (712)
Q Consensus 552 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 614 (712)
..+|..+..+|...|++..|+++|+....++.-+.+..+...|++++.+.|++.+|.+.+...
T Consensus 680 ~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a 742 (1018)
T KOG2002|consen 680 EDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKA 742 (1018)
T ss_pred CceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 456777788888888888888888887766665557778888888888888888888777665
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=3.1e-21 Score=184.97 Aligned_cols=422 Identities=12% Similarity=0.150 Sum_probs=347.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCce---eHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 005136 253 WTVILDVFIEMGDLGEARRIFDEMPERNEV---SWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASL 329 (712)
Q Consensus 253 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 329 (712)
...|..-..+.|++++|++.-..+-..|+. ..-.+-..+.+..+.++....-....+ ..+.-..+|..+...+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r-~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIR-KNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhh-ccchHHHHHHHHHHHHHHh
Confidence 344556667799999999988777653322 222223445555666665544333333 2344567999999999999
Q ss_pred CChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhh
Q 005136 330 KALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFD 409 (712)
Q Consensus 330 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 409 (712)
|+++.|+..++.+++.. +.....|..+..++...|+.+.|...|.+..+.+|...-+.+.+...+...|+.++|...+.
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 99999999999999864 22567888999999999999999999999999887544455555566667899999988887
Q ss_pred cCCC--C-CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCc
Q 005136 410 NMPK--R-NDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPN-KSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYD 485 (712)
Q Consensus 410 ~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 485 (712)
+..+ | -...|+.|...+...|+...|+..|++.... .|+ ...|..+-..|...+.+++|...+.+..... +..
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~ 285 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNH 285 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccc
Confidence 7764 3 3568999999999999999999999999874 455 3577888888888999999998888877643 445
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHhccCCC--CC-cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHH
Q 005136 486 VFLGTALTDTYAKSGDIESSRRVFDRMPD--KN-EISWTVMVRGLAESGYAKESINLFEEMEKTSITPNE-LTILSVLFA 561 (712)
Q Consensus 486 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~ 561 (712)
...+..+...|..+|.++-|+..+++... |+ +..|+.|..++-..|++.+|...+.+... +.|+. ...+.|...
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni 363 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNI 363 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHH
Confidence 67778888889999999999999999874 43 45799999999999999999999999998 67764 678999999
Q ss_pred hcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHH
Q 005136 562 CSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQI 638 (712)
Q Consensus 562 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~ 638 (712)
+...|.++.|..+|.... .+.| -....+.|+..|-+.|++++|+..+++. +++|. ...+..+...|-..|+...
T Consensus 364 ~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHH
Confidence 999999999999999987 5577 4668899999999999999999999987 78888 7788999999999999999
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 639 AERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 639 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
|.+.+.+++..+|...+++..|+.+|...|+..+|++-++..++-.
T Consensus 441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999988754
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=1.6e-19 Score=193.40 Aligned_cols=413 Identities=11% Similarity=0.036 Sum_probs=268.0
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC--CCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChh
Q 005136 257 LDVFIEMGDLGEARRIFDEMPE--RNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKP-NTSCFSIVLSALASLKALR 333 (712)
Q Consensus 257 l~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~ 333 (712)
...+.+.|++++|+..|++... |+...|..+..+|.+.|++++|++.++..++. .| +...+..+..++...|+++
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHH
Confidence 3344444444444444444432 44445556666666666666666666666552 33 3445555666666666666
Q ss_pred hHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCC
Q 005136 334 SGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPK 413 (712)
Q Consensus 334 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 413 (712)
+|...+..+.......+.. ...++..+.. ..+........+..+++...+..+...+ ..........-+....+
T Consensus 212 eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 212 DALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYL-QSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HHHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHH-HHccCCcchhhhhcccc
Confidence 6666555443332111111 1111111111 1222222233333333333333332222 11111111111111111
Q ss_pred CC---cccHHHHHHHH---HhcCChhHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCc
Q 005136 414 RN---DVSWSAIISGY---LEHKQFDLVFAVFNEMLLSG-EIP-NKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYD 485 (712)
Q Consensus 414 ~~---~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~g-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 485 (712)
-+ ...+..+...+ ...+++++|...|++....+ ..| ....+..+...+...|++++|...+++..+.. +..
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence 11 11222222111 23467889999999998765 234 34556677777888999999999999988763 334
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHhccCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 005136 486 VFLGTALTDTYAKSGDIESSRRVFDRMPD---KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPN-ELTILSVLFA 561 (712)
Q Consensus 486 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 561 (712)
...+..+..++...|++++|...|+.+.+ .+...|..+...+...|++++|+..|++.++ +.|+ ...+..+..+
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~ 442 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHH
Confidence 56777888889999999999999987753 3567888899999999999999999999998 4564 4667778888
Q ss_pred hcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCH-H------H-HHHHHHHHh
Q 005136 562 CSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPDS-N------A-WASLLSGCK 631 (712)
Q Consensus 562 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~------~-~~~l~~~~~ 631 (712)
+.+.|++++|+..|++... ..| +...+..++.++...|++++|++.|++. ...|+. . . +......+.
T Consensus 443 ~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~ 519 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKK---NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQ 519 (615)
T ss_pred HHHCCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH
Confidence 9999999999999999873 356 6788999999999999999999999986 444431 1 1 111222244
Q ss_pred hcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 632 TYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 632 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
..|++++|...++++++++|++..++..++.++.+.|++++|++++++..+.
T Consensus 520 ~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 520 WKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999999998764
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=2.5e-19 Score=182.62 Aligned_cols=301 Identities=12% Similarity=0.101 Sum_probs=208.8
Q ss_pred HHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCC-------cccHHHHHHHHHhcCC
Q 005136 359 DLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRN-------DVSWSAIISGYLEHKQ 431 (712)
Q Consensus 359 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~~~ 431 (712)
..+...|++++|...|.++.+.++.+..++..+...+...|++++|..+++.+.... ...+..++..|...|+
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 345566777777777777777666556666666666777777777755555544311 1235556666666666
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhcc
Q 005136 432 FDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDR 511 (712)
Q Consensus 432 ~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 511 (712)
+++|..+|+++.+.. +++..++..++..+...|++++|.+.+..+.+.+..+....
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------------- 178 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE----------------------- 178 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-----------------------
Confidence 666677777766542 33455566666666666666666666666554321111000
Q ss_pred CCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCc--h
Q 005136 512 MPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPN-ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPN--G 588 (712)
Q Consensus 512 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~ 588 (712)
....+..+...+...|++++|...++++.+. .|+ ...+..+...+.+.|++++|.++|+++... .|+ .
T Consensus 179 ----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~ 249 (389)
T PRK11788 179 ----IAHFYCELAQQALARGDLDAARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLS 249 (389)
T ss_pred ----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHH
Confidence 0012345666777888888888888888874 344 456777788888999999999999988733 443 4
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh-
Q 005136 589 RHYTCVVDMLSRSGRLSEAEDFINSM-PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYAS- 666 (712)
Q Consensus 589 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~- 666 (712)
.++..++.+|...|++++|...++++ ...|+...+..+...+...|++++|..+++++++..|+++.....+...+..
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~ 329 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEA 329 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhcc
Confidence 56788899999999999999999987 4567777777788889999999999999999999999976444334333322
Q ss_pred -cCCchhHHHHHHHHHhCCCccCCccc
Q 005136 667 -AGRWIDAMNVRKLMTEKGLRKSGGCS 692 (712)
Q Consensus 667 -~g~~~eA~~~~~~~~~~~~~~~~~~~ 692 (712)
.|+..+|+.++++|++++++++|.+.
T Consensus 330 ~~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 330 EEGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred CCccchhHHHHHHHHHHHHHhCCCCEE
Confidence 56999999999999999998888744
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=1.5e-17 Score=181.39 Aligned_cols=364 Identities=10% Similarity=0.058 Sum_probs=182.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 005136 284 WSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSK 363 (712)
Q Consensus 284 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 363 (712)
+..+...+...|++++|..+|++..+.. +.+......+...+...|++++|...++.+.+.. +.+.. +..+..++..
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~ 128 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKR 128 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHH
Confidence 4555555555555555555555555421 2233344445555555566666666666555542 22333 5555666666
Q ss_pred cCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcc--------cHHHHHHHHH-----hcC
Q 005136 364 CGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDV--------SWSAIISGYL-----EHK 430 (712)
Q Consensus 364 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~l~~~~~-----~~~ 430 (712)
.|+.++|...++++.+..|.+...+..+...+...+..++|++.++.... ++. ....++.... ..+
T Consensus 129 ~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~ 207 (765)
T PRK10049 129 AGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKE 207 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhH
Confidence 66666666666666666655555555556666666666666555555443 111 0011111111 111
Q ss_pred Ch---hHHHHHHHHHHHC-CCCCCHH-HHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHH
Q 005136 431 QF---DLVFAVFNEMLLS-GEIPNKS-TFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESS 505 (712)
Q Consensus 431 ~~---~~a~~~~~~~~~~-g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 505 (712)
++ ++|+..++.+.+. ...|+.. .+... ....+..+...|++++|
T Consensus 208 r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a-------------------------------~~d~l~~Ll~~g~~~eA 256 (765)
T PRK10049 208 RYAIADRALAQYDALEALWHDNPDATADYQRA-------------------------------RIDRLGALLARDRYKDV 256 (765)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCccchHHHHH-------------------------------HHHHHHHHHHhhhHHHH
Confidence 22 3445555555432 1111110 10000 00001122233445555
Q ss_pred HHHhccCCCCC---cc-hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHhcccCcHHHHHHHHH
Q 005136 506 RRVFDRMPDKN---EI-SWTVMVRGLAESGYAKESINLFEEMEKTSITPN-----ELTILSVLFACSHSGLVDKGLKYFN 576 (712)
Q Consensus 506 ~~~~~~~~~~~---~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~ 576 (712)
+..|+.+.+.+ +. ....+..+|...|++++|+.+|+++.+. .|. ......+..++...|++++|.+.++
T Consensus 257 ~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~ 334 (765)
T PRK10049 257 ISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESENYPGALTVTA 334 (765)
T ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 55554444221 10 1111234455555555555555554432 121 1223333444455555555555555
Q ss_pred hcchhc----------CCCCc---hHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHH
Q 005136 577 SMEPIY----------NIKPN---GRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAER 641 (712)
Q Consensus 577 ~~~~~~----------~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~ 641 (712)
.+.... .-.|+ ...+..++..+...|++++|+++++++ ...|+ ...+..+...+...|+.++|++
T Consensus 335 ~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~ 414 (765)
T PRK10049 335 HTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAEN 414 (765)
T ss_pred HHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 544210 01222 123445666667777777777777765 33333 4555666666677777777777
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 642 AVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 642 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
.++++++.+|+++.++..++..+...|++++|...++++++..
T Consensus 415 ~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 415 ELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 7777777777777777777777777777777777777776643
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=2.3e-17 Score=176.84 Aligned_cols=417 Identities=15% Similarity=0.070 Sum_probs=195.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHcc
Q 005136 153 TAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKM 232 (712)
Q Consensus 153 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 232 (712)
......+.+.|++++|+..|++.++ ..|+...|..+..++...|+++.|...++..++.. +.+...+..+..++...
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 3445555666666666666666554 34555556666666666666666666666665543 33344555566666666
Q ss_pred CChHHHHHHHhhcCCCC---cchHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005136 233 GEVDLARSVFDRMEKRD---VVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTR 309 (712)
Q Consensus 233 ~~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 309 (712)
|++++|...|..+...+ ......++..+........+...++.-. .+...+..+.. +...........-+....+
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhcccc
Confidence 66666665554332211 1111111111111111122222222211 12222222222 2111111111111111111
Q ss_pred CCCCCCH-HHHHHHHH---HHhccCChhhHHHHHHHHHHcC-CCC-cHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCC
Q 005136 310 YSFKPNT-SCFSIVLS---ALASLKALRSGMHVHAHVLKIG-IEK-DVFISNALIDLYSKCGETKDGRLVFDSIVEKDVA 383 (712)
Q Consensus 310 ~~~~p~~-~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 383 (712)
..|.. ..+..+.. -....+++++|.+.++...+.+ ..| ....+..+..++...|++++|...|++..+.++.
T Consensus 286 --~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~ 363 (615)
T TIGR00990 286 --LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR 363 (615)
T ss_pred --cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 11110 00000000 0122345666666666666543 112 3345555666666667777777776666666554
Q ss_pred ceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 005136 384 HVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASAS 463 (712)
Q Consensus 384 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~ 463 (712)
....|..+...+...|++++| ...|++.++.. +.+...+..+...+..
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA-------------------------------~~~~~~al~~~-p~~~~~~~~lg~~~~~ 411 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKA-------------------------------EEDFDKALKLN-SEDPDIYYHRAQLHFI 411 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHH-------------------------------HHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 455555555555555555555 55554444431 2223444444444444
Q ss_pred cCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC---CCcchHHHHHHHHHHcCChHHHHHHH
Q 005136 464 VASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPD---KNEISWTVMVRGLAESGYAKESINLF 540 (712)
Q Consensus 464 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~ 540 (712)
.|++++|...+++..+.. +.+...+..+..++.+.|++++|...|+...+ .+...++.+...+...|++++|++.|
T Consensus 412 ~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~ 490 (615)
T TIGR00990 412 KGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKF 490 (615)
T ss_pred cCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHH
Confidence 555555555554444432 22333344445555555555555555555432 23445555666666666666666666
Q ss_pred HHHHHcCCCCCH-HH-------HHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHH
Q 005136 541 EEMEKTSITPNE-LT-------ILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFI 611 (712)
Q Consensus 541 ~~~~~~~~~p~~-~~-------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 611 (712)
++.... .|+. .. ++.....+...|++++|.+++++.. .+.| +...+..++.++.+.|++++|+..|
T Consensus 491 ~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl---~l~p~~~~a~~~la~~~~~~g~~~eAi~~~ 565 (615)
T TIGR00990 491 DTAIEL--EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKAL---IIDPECDIAVATMAQLLLQQGDVDEALKLF 565 (615)
T ss_pred HHHHhc--CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 666652 2221 00 1111112223466666666666654 2244 3344556666666666666666666
Q ss_pred HhC
Q 005136 612 NSM 614 (712)
Q Consensus 612 ~~~ 614 (712)
++.
T Consensus 566 e~A 568 (615)
T TIGR00990 566 ERA 568 (615)
T ss_pred HHH
Confidence 654
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=5.7e-18 Score=180.53 Aligned_cols=332 Identities=8% Similarity=-0.007 Sum_probs=200.7
Q ss_pred eHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 005136 283 SWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYS 362 (712)
Q Consensus 283 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 362 (712)
-...++..+.+.|++++|..+++......-. +...+..++.+....|+++.|...++.+.... +.+...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 3445566666777777777777776653222 22233333344445666666666666666543 223455556666666
Q ss_pred hcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 005136 363 KCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEM 442 (712)
Q Consensus 363 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 442 (712)
..|++++|...+++.....+.+...+..+...+...|+.++| ...++.+
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA-------------------------------~~~~~~~ 170 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQA-------------------------------ISLARTQ 170 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHH-------------------------------HHHHHHH
Confidence 666666666666666666555555566666666666666666 5555544
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC---CCcch
Q 005136 443 LLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPD---KNEIS 519 (712)
Q Consensus 443 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~ 519 (712)
...... +...+..+ ..+...|++++|...++.+.+....++......+...+...|++++|...++.... .+...
T Consensus 171 ~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~ 248 (656)
T PRK15174 171 AQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAAL 248 (656)
T ss_pred HHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH
Confidence 433211 11111111 22445555555555555554432222222333344555666666666666665542 23445
Q ss_pred HHHHHHHHHHcCChHH----HHHHHHHHHHcCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHH
Q 005136 520 WTVMVRGLAESGYAKE----SINLFEEMEKTSITPN-ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTC 593 (712)
Q Consensus 520 ~~~l~~~~~~~~~~~~----A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 593 (712)
+..+...+...|++++ |+..++++.+ ..|+ ...+..+...+...|++++|+..++++.. ..| +...+..
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~ 323 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAM 323 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 6666677777777764 6777887777 4554 45677777778888888888888887773 356 4566777
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCCCHHHH-HHHHHHHhhcCCHHHHHHHHHHHhccCCCCC
Q 005136 594 VVDMLSRSGRLSEAEDFINSM-PFEPDSNAW-ASLLSGCKTYKNEQIAERAVKNLWKLAEEHP 654 (712)
Q Consensus 594 l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 654 (712)
++.+|.+.|++++|...++++ ...|+...+ ..+..++...|+.++|...++++++..|++.
T Consensus 324 La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 324 YARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 788888888888888888776 345554333 3344557788888888888888888888754
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=1.4e-16 Score=169.92 Aligned_cols=421 Identities=11% Similarity=0.058 Sum_probs=258.4
Q ss_pred ccCChHHHHHHHhhcCCCCcc---hHHHHHHHHHhcCCHHHHHHHHhhCCCCCcee-HHHH--HHHHHhcCChhHHHHHH
Q 005136 231 KMGEVDLARSVFDRMEKRDVV---SWTVILDVFIEMGDLGEARRIFDEMPERNEVS-WSVM--IARYNQSGYPEEAFRLF 304 (712)
Q Consensus 231 ~~~~~~~a~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~l--~~~~~~~~~~~~a~~~~ 304 (712)
+.|+++.|...|++..+.++. ....++..+...|+.++|+..+++...|+... +..+ ...+...|++++|+++|
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely 125 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALW 125 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 444444444444444431111 11134444444444444444444544432222 2222 23445556666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCc
Q 005136 305 RQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAH 384 (712)
Q Consensus 305 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 384 (712)
+++.+.. +-+...+..++..+...++.++|++.+..+.... |+...+..++..+...++..+|+..++++.+.+|.+
T Consensus 126 ~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n 202 (822)
T PRK14574 126 QSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTS 202 (822)
T ss_pred HHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCC
Confidence 6665522 1123344444555555566666666655555442 333333333333333444444666666666666555
Q ss_pred eeeHHHHHHHHhccCChhhHHHHhhcCCCC---Ccc------cHHHHHHHH-----HhcCCh---hHHHHHHHHHHHC-C
Q 005136 385 VVSWNSMIGGYGLNGQMEEAKELFDNMPKR---NDV------SWSAIISGY-----LEHKQF---DLVFAVFNEMLLS-G 446 (712)
Q Consensus 385 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~------~~~~l~~~~-----~~~~~~---~~a~~~~~~~~~~-g 446 (712)
...+..+..++.+.|-...|.++...-+.- ... .....++.- ....++ +.|+.-++.+... +
T Consensus 203 ~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~ 282 (822)
T PRK14574 203 EEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWG 282 (822)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhcc
Confidence 666666666666666666666666554421 000 000011000 011222 3445555555542 2
Q ss_pred CCCC-HHHH----HHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCC-----
Q 005136 447 EIPN-KSTF----SSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKN----- 516 (712)
Q Consensus 447 ~~p~-~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----- 516 (712)
..|. ...| .=.+.++...+++.+++..++.+...+.+.+..+...+.++|...+++++|..+++.+...+
T Consensus 283 ~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~ 362 (822)
T PRK14574 283 KDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFR 362 (822)
T ss_pred CCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccC
Confidence 2232 2222 12244677888999999999999988887777888899999999999999999999875321
Q ss_pred ----cchHHHHHHHHHHcCChHHHHHHHHHHHHcCC-----------CCC--HH-HHHHHHHHhcccCcHHHHHHHHHhc
Q 005136 517 ----EISWTVMVRGLAESGYAKESINLFEEMEKTSI-----------TPN--EL-TILSVLFACSHSGLVDKGLKYFNSM 578 (712)
Q Consensus 517 ----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------~p~--~~-~~~~l~~~~~~~g~~~~a~~~~~~~ 578 (712)
......|.-++...+++++|..+++++.+... .|| -. .+..++..+...|++.+|++.++++
T Consensus 363 ~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l 442 (822)
T PRK14574 363 NSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDL 442 (822)
T ss_pred CCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22246788899999999999999999987311 122 22 2445567788899999999999999
Q ss_pred chhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCc
Q 005136 579 EPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPA 655 (712)
Q Consensus 579 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 655 (712)
. ...| |......++.++...|++.+|+..++.. ...|+ ..+....+.++...|++.+|+.+.+.+.+..|+++.
T Consensus 443 ~---~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 443 S---STAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred H---HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 7 3477 8999999999999999999999999876 45665 455566777788999999999999999999999885
Q ss_pred hH
Q 005136 656 GY 657 (712)
Q Consensus 656 ~~ 657 (712)
+-
T Consensus 520 ~~ 521 (822)
T PRK14574 520 SQ 521 (822)
T ss_pred HH
Confidence 44
No 23
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.83 E-value=1.6e-15 Score=153.16 Aligned_cols=586 Identities=10% Similarity=0.047 Sum_probs=369.9
Q ss_pred HhcCChHHHHHHHhhCCC---CChhHHHHHHHHHHccCChHHHHHHhh---hCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 005136 98 IQWGNLEEAQRLFDGMPE---RNEVSWTALISGFMKHGRVEESMWYFE---RNPFQNVISWTAAICGFVQNGFSFEALKL 171 (712)
Q Consensus 98 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 171 (712)
.-+|++++|..++.++.. .+...|.+|...|-..|+.+++...+- .+.+.|...|-.+.....+.|++++|.-.
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 334777777777766654 245567777777777777777766542 34445556677777777777777777777
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHH----HHHHHccCChHHHHHHHhhcCC
Q 005136 172 FLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSL----ITLSLKMGEVDLARSVFDRMEK 247 (712)
Q Consensus 172 ~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~~~~~~a~~~~~~~~~ 247 (712)
|.+.++.. +++-..+.--+..|-+.|+...|...+.++....++.+..-+..+ +..+...++.+.|.+.++....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 77776653 223334444455666677777777777777666543343333333 3344455555666666665543
Q ss_pred -----CCcchHHHHHHHHHhcCCHHHHHHHHhhCCC--------------------------CCceeHH----HHHHHHH
Q 005136 248 -----RDVVSWTVILDVFIEMGDLGEARRIFDEMPE--------------------------RNEVSWS----VMIARYN 292 (712)
Q Consensus 248 -----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------------------------~~~~~~~----~l~~~~~ 292 (712)
-+...++.++..+.+...++.|......... ++..+|. -++-++.
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 2334566666667766666666665544322 1111111 2223334
Q ss_pred hcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHH
Q 005136 293 QSGYPEEAFRLFRQMTRYSFKP--NTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDG 370 (712)
Q Consensus 293 ~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 370 (712)
+.+..+....+........+.| +...|.-+..++...|++..|+.++..+.......+..+|-.+..+|...|..+.|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 4444444555555555655444 55689999999999999999999999999886666788999999999999999999
Q ss_pred HHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcc------------cHHHHHHHHHhcCChhHHHHH
Q 005136 371 RLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDV------------SWSAIISGYLEHKQFDLVFAV 438 (712)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~l~~~~~~~~~~~~a~~~ 438 (712)
...|+.+....|.+..+-..|...+-+.|+.++|.+.++.+..||.. ........+.+.|+.++-+.+
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 99999999999888889999999999999999999999998866522 233344556777777665555
Q ss_pred HHHHHHCC-----C-----------------CCCHHHHHHHHHHHhccCchHHHHHHHHH------HHHcCCCCch--hh
Q 005136 439 FNEMLLSG-----E-----------------IPNKSTFSSVLCASASVASLEKGKDLHGK------IIKLGFPYDV--FL 488 (712)
Q Consensus 439 ~~~~~~~g-----~-----------------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~------~~~~~~~~~~--~~ 488 (712)
-..|+... + +-...+...++.+-.+.++.....+-... ....++..+. ..
T Consensus 549 ~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel 628 (895)
T KOG2076|consen 549 ASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFEL 628 (895)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHH
Confidence 44444321 1 11122222333333333332222111111 1112222221 35
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCCC-----Ccc----hHHHHHHHHHHcCChHHHHHHHHHHHHc-C--CCCCH-HHH
Q 005136 489 GTALTDTYAKSGDIESSRRVFDRMPDK-----NEI----SWTVMVRGLAESGYAKESINLFEEMEKT-S--ITPNE-LTI 555 (712)
Q Consensus 489 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~--~~p~~-~~~ 555 (712)
+..++..+.+.+++++|..+...+... +.. .-...+.+.+..+++..|...++.|+.. + ..|.. ..|
T Consensus 629 ~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~ 708 (895)
T KOG2076|consen 629 FRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLW 708 (895)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 566777888999999999998877632 111 2344566778899999999999998874 1 12322 234
Q ss_pred HHHHHHhcccCcHHHHHHHHHhcchhcCCCC-c-hHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHH-Hh
Q 005136 556 LSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-N-GRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPDSNAWASLLSG-CK 631 (712)
Q Consensus 556 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~-~~ 631 (712)
+...+...+.++-.--.+++..+.. .+| + +......+..+..++.+.-|+..+-+. ...|+....+.+++. +.
T Consensus 709 n~~~s~~~~~~q~v~~~R~~~~~~~---~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafi 785 (895)
T KOG2076|consen 709 NLDFSYFSKYGQRVCYLRLIMRLLV---KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFI 785 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc---cCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 4455555555554444455544431 233 2 333334455567889999998877665 445653333333222 21
Q ss_pred ----------hcCCHHHHHHHHHHHhccCCC--CCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCcc
Q 005136 632 ----------TYKNEQIAERAVKNLWKLAEE--HPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLRK 687 (712)
Q Consensus 632 ----------~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~ 687 (712)
++-..-++..++++..++.-. ..++.+.+|++|...|-..=|..+++++++-.+.+
T Consensus 786 h~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~ 853 (895)
T KOG2076|consen 786 HLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKD 853 (895)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccc
Confidence 233455677788877776544 67899999999999999999999999999865433
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=2e-17 Score=176.41 Aligned_cols=326 Identities=13% Similarity=0.030 Sum_probs=238.4
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCC
Q 005136 321 IVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQ 400 (712)
Q Consensus 321 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 400 (712)
.++..+.+.|+++.|..++...+..... +......++.+....|++++|...|+++...+|.+..++..
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~---------- 115 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLL---------- 115 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHH----------
Confidence 3344444555555555555555544322 22233333344444555555555555555555444444444
Q ss_pred hhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHc
Q 005136 401 MEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKL 480 (712)
Q Consensus 401 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 480 (712)
+...+...|++++|...++++.... +.+...+..+...+...|++++|...+..+...
T Consensus 116 ---------------------la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 116 ---------------------VASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred ---------------------HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 4445555555555599999888752 345667788888999999999999999988765
Q ss_pred CCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCC----cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHH
Q 005136 481 GFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKN----EISWTVMVRGLAESGYAKESINLFEEMEKTSITPN-ELTI 555 (712)
Q Consensus 481 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~ 555 (712)
... +...+..+ ..+...|++++|...++.+.+.+ ...+..+...+...|++++|+..++++.+. .|+ ...+
T Consensus 174 ~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~ 249 (656)
T PRK15174 174 VPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALR 249 (656)
T ss_pred CCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHH
Confidence 432 33333333 34788999999999999876432 233445567888999999999999999984 454 5667
Q ss_pred HHHHHHhcccCcHHH----HHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 005136 556 LSVLFACSHSGLVDK----GLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLS 628 (712)
Q Consensus 556 ~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~ 628 (712)
..+..++...|++++ |...|+++. ...| +...+..++..+.+.|++++|...+++. ...|+ ...+..+..
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al---~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~ 326 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHAL---QFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 788889999999985 899999988 3467 6788999999999999999999999987 44565 556667777
Q ss_pred HHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 005136 629 GCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 629 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 686 (712)
.+...|++++|...++++.+..|+++..+..++.++...|++++|+..+++.++..+.
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 7999999999999999999999998887888899999999999999999999887544
No 25
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=3.6e-18 Score=174.14 Aligned_cols=287 Identities=12% Similarity=0.092 Sum_probs=146.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCc---HHHHHHHHHHHHhcC
Q 005136 289 ARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKD---VFISNALIDLYSKCG 365 (712)
Q Consensus 289 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g 365 (712)
..+...|++++|+..|+++.+.+ +.+..++..+...+...|+++.|..+++.+...+..++ ...+..++..|...|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34455667777777777776632 22344566666666667777777777766665432111 234566667777777
Q ss_pred ChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCc--------ccHHHHHHHHHhcCChhHHHH
Q 005136 366 ETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRND--------VSWSAIISGYLEHKQFDLVFA 437 (712)
Q Consensus 366 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~a~~ 437 (712)
++++|..+|+++.+..+.+..++..++..+.+.|++++|++.++.+.+.++ ..+..++..+.+.|++++|..
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 777777777777665555555666666666666666666555554432110 123334444555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC--CC
Q 005136 438 VFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP--DK 515 (712)
Q Consensus 438 ~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~ 515 (712)
.|+++.+.. +.+...+..+...+.+.|++++|.+++.++.+.+.......+..++.+|...|++++|...++++. .|
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p 280 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP 280 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 555555432 222334444444555555555555555555443211122333444444444444444444444433 23
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc---cCcHHHHHHHHHhcc
Q 005136 516 NEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSH---SGLVDKGLKYFNSME 579 (712)
Q Consensus 516 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~ 579 (712)
+...+..++..+.+.|++++|..+++++.+ ..|+..++..++..+.. .|+.++++..++++.
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence 333334444444444555555555544444 23444444444433332 234444444444444
No 26
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.82 E-value=8.8e-15 Score=147.97 Aligned_cols=646 Identities=12% Similarity=0.081 Sum_probs=336.6
Q ss_pred CCCchhhHHHHHHHhhccchhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHHHHhhc---CCCCcchHHHH
Q 005136 17 FNSYIETCLCLLKDITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVKDL---NGFDLVVHNCM 93 (712)
Q Consensus 17 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l 93 (712)
++|...........+...|++++|..++.+.++..+- ....|.+|...|-..|+.+++...+--. .+.|..-|..+
T Consensus 135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~l 213 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRL 213 (895)
T ss_pred cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 4455666666666677778888888888888877744 6666777888888888888887666544 44556777777
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCChh---HHHHHHHHHHccCChHHHHHHhhhCCCC----Cc----ccHHHHHHHHHhc
Q 005136 94 INANIQWGNLEEAQRLFDGMPERNEV---SWTALISGFMKHGRVEESMWYFERNPFQ----NV----ISWTAAICGFVQN 162 (712)
Q Consensus 94 ~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~----~~~~~li~~~~~~ 162 (712)
..-..+.|++..|.-+|.+..+.++. ..-.-...|-+.|+...|...|.++.+. |. ..--.+++.+...
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh
Confidence 77777888888888888777653332 2233445667777777777666554321 11 1223344556666
Q ss_pred CChhHHHHHHHHHHHcC-CCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhC---------------------------
Q 005136 163 GFSFEALKLFLKLLESG-VKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAG--------------------------- 214 (712)
Q Consensus 163 g~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------------- 214 (712)
++-+.|.+.++.....+ -.-+...++.++..+.....++.+...........
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 66677777776666522 12233455666666666666666666665554411
Q ss_pred CCCCccHHHHHHHHHHcc--CChHHHHHHHhhcCC----CCcchHHHHHHHHHhcCCHHHHHHHHhhCCC----CCceeH
Q 005136 215 FEKHVSVCNSLITLSLKM--GEVDLARSVFDRMEK----RDVVSWTVILDVFIEMGDLGEARRIFDEMPE----RNEVSW 284 (712)
Q Consensus 215 ~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~ 284 (712)
..++..++ .++-++.+. +...++...|..... .++..|..+..++...|++++|..+|..+.. .+...|
T Consensus 374 ~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw 452 (895)
T KOG2076|consen 374 LSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVW 452 (895)
T ss_pred CCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhh
Confidence 11112220 111122222 222222222211111 1333455555666666666666666655543 234455
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCChhhHHHHHHHHH--------HcCCCCcHHHHH
Q 005136 285 SVMIARYNQSGYPEEAFRLFRQMTRYSFKPNT-SCFSIVLSALASLKALRSGMHVHAHVL--------KIGIEKDVFISN 355 (712)
Q Consensus 285 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~ 355 (712)
-.+...|...|.++.|...|+..+. ..|+. ..-..|-..+.+.|+.++|.+++..+. ..+..|+..+..
T Consensus 453 ~~~a~c~~~l~e~e~A~e~y~kvl~--~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~ 530 (895)
T KOG2076|consen 453 YKLARCYMELGEYEEAIEFYEKVLI--LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILA 530 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHh--cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHH
Confidence 5566666666666666666666554 33322 233334444445566666666555532 112333344444
Q ss_pred HHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHH
Q 005136 356 ALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLV 435 (712)
Q Consensus 356 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 435 (712)
.....+...|+.++=..+-..|..... ...++ .....-.+.......-...........+.+-.+.++....
T Consensus 531 ~r~d~l~~~gk~E~fi~t~~~Lv~~~~-----~~~~~---f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 602 (895)
T KOG2076|consen 531 HRCDILFQVGKREEFINTASTLVDDFL-----KKRYI---FPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVM 602 (895)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHH-----HHHHh---cchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHh
Confidence 444455555555543333222221110 00000 0000000000000000001111222222222222221111
Q ss_pred HH------HHHHHHHCCCCCCH--HHHHHHHHHHhccCchHHHHHHHHHHHHcCC--CCch---hhHHHHHHHHHhcCCh
Q 005136 436 FA------VFNEMLLSGEIPNK--STFSSVLCASASVASLEKGKDLHGKIIKLGF--PYDV---FLGTALTDTYAKSGDI 502 (712)
Q Consensus 436 ~~------~~~~~~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~ 502 (712)
.+ .+.--...|+..+. ..+.-++.++++.+.+++|..+...+..... .++. ..-...+.+....+++
T Consensus 603 ~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~ 682 (895)
T KOG2076|consen 603 EKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDP 682 (895)
T ss_pred hhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCH
Confidence 11 11111122332222 2344555666677777777777666655321 1111 1222334455566777
Q ss_pred HHHHHHhccCCCC-----C---cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHhcccCcHHHHH
Q 005136 503 ESSRRVFDRMPDK-----N---EISWTVMVRGLAESGYAKESINLFEEMEKTSITPNE--LTILSVLFACSHSGLVDKGL 572 (712)
Q Consensus 503 ~~A~~~~~~~~~~-----~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~ 572 (712)
..|...++.+... + ...|+...+.+.+.++-.--.+.+..+.. ..|+. ..+.....-....+.+..|+
T Consensus 683 ~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al 760 (895)
T KOG2076|consen 683 GDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVNASFKHAL 760 (895)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhccchHHHH
Confidence 7777777766532 2 23466555555555544433444433333 22322 11222222334566777787
Q ss_pred HHHHhcchhcCCCCchHHHH-HHHHHhhh----------cCChHHHHHHHHhC-CC-CC--CHHHHHHHHHHHhhcCCHH
Q 005136 573 KYFNSMEPIYNIKPNGRHYT-CVVDMLSR----------SGRLSEAEDFINSM-PF-EP--DSNAWASLLSGCKTYKNEQ 637 (712)
Q Consensus 573 ~~~~~~~~~~~~~p~~~~~~-~l~~~~~~----------~g~~~~A~~~~~~~-~~-~p--~~~~~~~l~~~~~~~g~~~ 637 (712)
..+-++. ...|+.+..+ +++-++.. .-..-++..++++. .. .+ ....+-++..+|...|=..
T Consensus 761 ~~y~ra~---~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~ 837 (895)
T KOG2076|consen 761 QEYMRAF---RQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVH 837 (895)
T ss_pred HHHHHHH---HhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHH
Confidence 7776665 3366533333 33333321 11234556666555 11 23 4677788999999999999
Q ss_pred HHHHHHHHHhccCCCC------------CchHHHHHHHHHhcCCchhHHHHHHH
Q 005136 638 IAERAVKNLWKLAEEH------------PAGYVLLSNIYASAGRWIDAMNVRKL 679 (712)
Q Consensus 638 ~a~~~~~~~~~~~p~~------------~~~~~~l~~~~~~~g~~~eA~~~~~~ 679 (712)
.|+.+|+++++..|.+ ..+-+.|..+|...|+..-|.+++++
T Consensus 838 LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 838 LAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred HHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 9999999999987652 24777889999999999999999875
No 27
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.82 E-value=1.3e-16 Score=159.89 Aligned_cols=643 Identities=11% Similarity=0.018 Sum_probs=362.2
Q ss_pred HHhhcCcCCCCCCchhhHHHHHHHhhccchhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHHHHhhcCCCC
Q 005136 7 SLFSINPETSFNSYIETCLCLLKDITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVKDLNGFD 86 (712)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 86 (712)
++-.+ ...|+.|+..||.+||..||+.|+.+.|. ++..|.-...+.....++.++.+..+.++.+.+. .|.
T Consensus 12 fla~~-e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 12 FLALH-EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred HHHHH-HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 44556 67899999999999999999999999999 9999988888888889999999999999887776 788
Q ss_pred cchHHHHHHHHHhcCChHH---HHHHHhhCCC-------------------------CChhHHHHHHHHHHccCChHHHH
Q 005136 87 LVVHNCMINANIQWGNLEE---AQRLFDGMPE-------------------------RNEVSWTALISGFMKHGRVEESM 138 (712)
Q Consensus 87 ~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~a~ 138 (712)
..+|..|..+|.+.||+.. ..+.+..+.. ||.. ..+....-.|-++.+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLL 159 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHH
Confidence 8999999999999998754 2221222111 1111 1111111122222222
Q ss_pred HHhh---------------------------------hCC-CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 005136 139 WYFE---------------------------------RNP-FQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNE 184 (712)
Q Consensus 139 ~~~~---------------------------------~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 184 (712)
+++. ... .++..+|..++..-..+|+.+.|..++.+|++.|++.+.
T Consensus 160 kll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred HHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 2221 111 367788999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcC
Q 005136 185 VTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMG 264 (712)
Q Consensus 185 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~ 264 (712)
..|..|+-+ .++...+..++.-|...|+.|+..|+...+..+...|....+.+..+.-.--....+..+.++.....
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k 316 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANK 316 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHH
Confidence 988888766 77888888999999999999999999888877777555332222211100001111112221111111
Q ss_pred CHHHH--HHHHhhCCC-------CCceeHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCC-CHHHHHHHHHHHhc----
Q 005136 265 DLGEA--RRIFDEMPE-------RNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYS--FKP-NTSCFSIVLSALAS---- 328 (712)
Q Consensus 265 ~~~~a--~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p-~~~~~~~ll~~~~~---- 328 (712)
+++.- ..+....++ .....|... .-...+|.-+++.++-..|..-. ..+ ++..|..++..+.+
T Consensus 317 ~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c-~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~ 395 (1088)
T KOG4318|consen 317 RLRQNLRKSVIGSTKKLFLLGTDILEAIWSMC-EKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIER 395 (1088)
T ss_pred HHHHHHHHHHHHHhhHHHHhccccchHHHHHH-HHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHh
Confidence 11100 000000000 011111111 11112333333333333332110 111 11112111111111
Q ss_pred ------------------cCChhhHHHHHHH------------HH----HcCCCC-------cHHHHHHHHHHHHhcCCh
Q 005136 329 ------------------LKALRSGMHVHAH------------VL----KIGIEK-------DVFISNALIDLYSKCGET 367 (712)
Q Consensus 329 ------------------~~~~~~a~~~~~~------------~~----~~~~~~-------~~~~~~~l~~~~~~~g~~ 367 (712)
..+.....+.... +. ...+.+ -..+-+.++..++..-+.
T Consensus 396 ~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~ 475 (1088)
T KOG4318|consen 396 HICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNK 475 (1088)
T ss_pred hHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 1111111111111 00 001111 112334455555555555
Q ss_pred HHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCc------ccHHHHHHHHHhcCChhHHHHHHHH
Q 005136 368 KDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRND------VSWSAIISGYLEHKQFDLVFAVFNE 441 (712)
Q Consensus 368 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~ 441 (712)
.+++..-+.....-. ...|..|+.-+......+.|..+.+++..++. .-+..+.+...+.+....+..++.+
T Consensus 476 lK~l~~~ekye~~lf--~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e 553 (1088)
T KOG4318|consen 476 LKILCDEEKYEDLLF--AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYE 553 (1088)
T ss_pred HHHHHHHHHHHHHHh--hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhh
Confidence 555544444433222 25688899999999999999999998887643 3577888888899999999999988
Q ss_pred HHHCCC-CC-CHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC---CCC
Q 005136 442 MLLSGE-IP-NKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP---DKN 516 (712)
Q Consensus 442 ~~~~g~-~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~ 516 (712)
+.+.-. .| ...++..++...+..|+.+...++.+-+...|+..+ ..++....+.++...|.+.++... ++.
T Consensus 554 ~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~~~qkyk~~ 629 (1088)
T KOG4318|consen 554 DKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQKYKPY 629 (1088)
T ss_pred hhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchHHHHHhcCC
Confidence 876421 22 245566777777888888888888888887776553 233344556677777766665443 222
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhc-----------chhcCCC
Q 005136 517 EISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSM-----------EPIYNIK 585 (712)
Q Consensus 517 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~-----------~~~~~~~ 585 (712)
+.....+.+.+. .+..+...++.+- ..=+..|.+.|++..|.++.+.= .+...+.
T Consensus 630 P~~~e~lcrlv~-ke~td~~qk~mDl-------------s~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~ 695 (1088)
T KOG4318|consen 630 PKDLEGLCRLVY-KETTDSPQKTMDL-------------SIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIV 695 (1088)
T ss_pred hHHHHHHHHHHH-hhccccHHHHHhh-------------cchhHHHHhcccccchhhccccCcccccCCCccccccCccc
Confidence 222222222111 1111111110000 00000133333333333332210 0000001
Q ss_pred C---------chHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC---CHHHHHHHHHHHhccCCC-
Q 005136 586 P---------NGRHYTCVVDMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYK---NEQIAERAVKNLWKLAEE- 652 (712)
Q Consensus 586 p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~- 652 (712)
| +......|...|.+.|+++.|..++.++.+.|.+.+...++..+.+.. +.-++....+++.+..|.
T Consensus 696 ~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f 775 (1088)
T KOG4318|consen 696 PLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLF 775 (1088)
T ss_pred cHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhccccc
Confidence 1 112223366778888888888888888887787777776666655433 444555555555554433
Q ss_pred --CCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 653 --HPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 653 --~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
....+...+...++....+.|.+.+.+..+..+
T Consensus 776 ~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~ 810 (1088)
T KOG4318|consen 776 PTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLT 810 (1088)
T ss_pred ccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccC
Confidence 334455555666666666678888888877643
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.81 E-value=6.9e-14 Score=136.05 Aligned_cols=615 Identities=13% Similarity=0.081 Sum_probs=393.2
Q ss_pred chhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHHHHhhc---CCCCcchHHHHHHHHHhcCChHHHHHHHh
Q 005136 35 NLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVKDL---NGFDLVVHNCMINANIQWGNLEEAQRLFD 111 (712)
Q Consensus 35 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 111 (712)
++...|+-++.-..+.++. ++..|-+-.+.--..|++..|+.+..+- .+.+..+|---+ +....+.|..+..
T Consensus 265 ~DikKaR~llKSvretnP~-hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeai----RLhp~d~aK~vvA 339 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPK-HPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAI----RLHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHH----hcCChHHHHHHHH
Confidence 3455666666666666643 5555655566666666666666665543 223334442222 1123344444444
Q ss_pred hCCCCChhHHHHHHHHHHccCChHHHHHHhhhC---CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHH
Q 005136 112 GMPERNEVSWTALISGFMKHGRVEESMWYFERN---PFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFS 188 (712)
Q Consensus 112 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 188 (712)
......+.+-..-+.+---..+...-.+++.+. .+.++..|-. .....+.+.|.-++.+..+. ++.+.
T Consensus 340 ~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKa----AVelE~~~darilL~rAvec-cp~s~---- 410 (913)
T KOG0495|consen 340 NAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKA----AVELEEPEDARILLERAVEC-CPQSM---- 410 (913)
T ss_pred HHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHH----HHhccChHHHHHHHHHHHHh-ccchH----
Confidence 443322222111111111111111112222221 1123333332 23344555566666666653 22122
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHH
Q 005136 189 SICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGE 268 (712)
Q Consensus 189 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 268 (712)
-|.-++++...++.|.++++...+. ++.+..+|-.-...--..|+.+...+++++-.. .+...|
T Consensus 411 dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~-----------~L~~ng---- 474 (913)
T KOG0495|consen 411 DLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLS-----------ELQANG---- 474 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH-----------HHhhcc----
Confidence 2333455556666677776666554 455666666655555566666666666553221 000000
Q ss_pred HHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhccCChhhHHHHHHHHHHcC
Q 005136 269 ARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPN--TSCFSIVLSALASLKALRSGMHVHAHVLKIG 346 (712)
Q Consensus 269 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 346 (712)
.+-+...|-.=...+-..|..-.+..+.+..+..|+.-. ..|+..-...|.+.+.++-+..+|...++.
T Consensus 475 --------v~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv- 545 (913)
T KOG0495|consen 475 --------VEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV- 545 (913)
T ss_pred --------eeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-
Confidence 001222333334445555555555666666655554432 346666777777777777777777777764
Q ss_pred CCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCC---CcccHHHHH
Q 005136 347 IEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKR---NDVSWSAII 423 (712)
Q Consensus 347 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~ 423 (712)
.+.+..+|......--..|..+.-..+|++.....+.....|-.....+-..|+...|..++...-+. +...|-..+
T Consensus 546 fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaav 625 (913)
T KOG0495|consen 546 FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAV 625 (913)
T ss_pred ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 23456677777766667788888888888887777666667777777777778888888777776542 445677777
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChH
Q 005136 424 SGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIE 503 (712)
Q Consensus 424 ~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 503 (712)
..-....+++.|..+|.+.... .|+...|.--+..---.+..++|.+++++..+. ++.-...|..+...+.+.++++
T Consensus 626 Kle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie 702 (913)
T KOG0495|consen 626 KLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIE 702 (913)
T ss_pred HHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHH
Confidence 7778888888888888887764 466666655555556678888999988887775 3455667888888888999999
Q ss_pred HHHHHhccCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcch
Q 005136 504 SSRRVFDRMPD---KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEP 580 (712)
Q Consensus 504 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 580 (712)
.|...|..-.+ ..+..|-.|...--+.|..-.|..++++.+-.+ +.+...|...+..-.+.|+.+.|..+..+..+
T Consensus 703 ~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 703 MAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99988887664 245578888888888889999999999888753 33567788888888999999999988888773
Q ss_pred hcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 005136 581 IYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLL 660 (712)
Q Consensus 581 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 660 (712)
.++.+...|..-+...-+.++.....+.+++....| ..+..+...+....+++.|...|.++++.+|++..++..+
T Consensus 782 --ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dp--hVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~f 857 (913)
T KOG0495|consen 782 --ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDP--HVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWF 857 (913)
T ss_pred --hCCccchhHHHHHHhccCcccchHHHHHHHhccCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHH
Confidence 455577788888888888888888888888876444 4455566667778899999999999999999999999999
Q ss_pred HHHHHhcCCchhHHHHHHHHHhCCCccCCcccEEEECC
Q 005136 661 SNIYASAGRWIDAMNVRKLMTEKGLRKSGGCSWVEVRN 698 (712)
Q Consensus 661 ~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (712)
-..+.+.|.-++-.+++.+.... +|.-|..|+-+..
T Consensus 858 ykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avSK 893 (913)
T KOG0495|consen 858 YKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVSK 893 (913)
T ss_pred HHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHhh
Confidence 99999999988888888887664 3555555654433
No 29
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=2.7e-16 Score=171.64 Aligned_cols=209 Identities=12% Similarity=0.046 Sum_probs=121.0
Q ss_pred HHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCC---chhhHHHHHHHHHhcCC
Q 005136 426 YLEHKQFDLVFAVFNEMLLSGEI-PNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPY---DVFLGTALTDTYAKSGD 501 (712)
Q Consensus 426 ~~~~~~~~~a~~~~~~~~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~ 501 (712)
+...|++++|...|+.+.+.+.+ |+.. ...+..++...|++++|...++.+.+..... .......+..++...|+
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~ 325 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESEN 325 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc
Confidence 34556677778888887776532 3221 1123456666677777777666655432110 01223333334445555
Q ss_pred hHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHhcccCcHHHHHHHHHhc
Q 005136 502 IESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNE---LTILSVLFACSHSGLVDKGLKYFNSM 578 (712)
Q Consensus 502 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~ 578 (712)
+++|.++++.+...++..... +. ...-.|+. ..+..+...+...|+.++|++.++++
T Consensus 326 ~~eA~~~l~~~~~~~P~~~~~-----------------~~---~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~a 385 (765)
T PRK10049 326 YPGALTVTAHTINNSPPFLRL-----------------YG---SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAREL 385 (765)
T ss_pred HHHHHHHHHHHhhcCCceEee-----------------cC---CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555554443211110000 00 00012332 23445566677778888888888877
Q ss_pred chhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCc
Q 005136 579 EPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPA 655 (712)
Q Consensus 579 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 655 (712)
.. ..| +...+..++.++...|++++|++.+++. ...|+ ...+...+..+...|++++|+..++++++..|+++.
T Consensus 386 l~---~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 386 AY---NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred HH---hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 63 255 6777778888888888888888888876 44565 445555555677888888888888888888888775
Q ss_pred hHH
Q 005136 656 GYV 658 (712)
Q Consensus 656 ~~~ 658 (712)
+..
T Consensus 463 ~~~ 465 (765)
T PRK10049 463 VQR 465 (765)
T ss_pred HHH
Confidence 443
No 30
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.80 E-value=4e-17 Score=163.51 Aligned_cols=609 Identities=11% Similarity=0.075 Sum_probs=377.8
Q ss_pred chhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHHHHhhcC----CCCcchHHHHHHHHHhcCChHHHHHHH
Q 005136 35 NLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVKDLN----GFDLVVHNCMINANIQWGNLEEAQRLF 110 (712)
Q Consensus 35 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~ 110 (712)
+.....+.++..+...|+.|+..+|.++|..||..|+++.|. +|..|. +-+..+|+.++.++.+.++.+.+.
T Consensus 4 e~kf~ptnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--- 79 (1088)
T KOG4318|consen 4 EVKFFPTNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--- 79 (1088)
T ss_pred ccccCcchHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---
Confidence 344455788999999999999999999999999999999999 888873 345679999999999999988775
Q ss_pred hhCCCCChhHHHHHHHHHHccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH-HcCCCCCHhhHHH
Q 005136 111 DGMPERNEVSWTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLL-ESGVKPNEVTFSS 189 (712)
Q Consensus 111 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~ 189 (712)
+|...+|+.|..+|.+.||+.- |+...+ ....++..+...|.-..-..++.... ..+.-||..+
T Consensus 80 ----ep~aDtyt~Ll~ayr~hGDli~----fe~veq----dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n--- 144 (1088)
T KOG4318|consen 80 ----EPLADTYTNLLKAYRIHGDLIL----FEVVEQ----DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN--- 144 (1088)
T ss_pred ----CCchhHHHHHHHHHHhccchHH----HHHHHH----HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---
Confidence 7889999999999999999765 222111 23345566666776666666665533 2234455543
Q ss_pred HHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHc-cCChHHHHHHHhhcCC-CCcchHHHHHHHHHhcCCHH
Q 005136 190 ICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLK-MGEVDLARSVFDRMEK-RDVVSWTVILDVFIEMGDLG 267 (712)
Q Consensus 190 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~ 267 (712)
++.-....|.++.+.+++..+-...... ....+++-+.. ...+++-..+.....+ ++..+|..++......|+.+
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~~~---p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d 221 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAWNA---PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVD 221 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcccccc---hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchh
Confidence 3333444556666666554432111000 11111222222 2345555555555555 88888999999999999999
Q ss_pred HHHHHHhhCCCCC----ceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHH-------
Q 005136 268 EARRIFDEMPERN----EVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGM------- 336 (712)
Q Consensus 268 ~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~------- 336 (712)
.|..++.+|.+.. ..-|-.|+-+ .++...+..+++-|.+.|+.|+..|+...+..+.+.|....+.
T Consensus 222 ~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~h 298 (1088)
T KOG4318|consen 222 GAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAH 298 (1088)
T ss_pred hHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhh
Confidence 9999999998743 2223344433 7788888899999999999999999988877776643321110
Q ss_pred -----------------HHHHH---------H---HHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCC----C
Q 005136 337 -----------------HVHAH---------V---LKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDV----A 383 (712)
Q Consensus 337 -----------------~~~~~---------~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~ 383 (712)
+.++. . .-.|+.....+|...+. ...+|.-++..++-..+..... .
T Consensus 299 g~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~ 377 (1088)
T KOG4318|consen 299 GFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQ 377 (1088)
T ss_pred hhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcc
Confidence 01100 0 00122222333332222 1224555555555544432211 1
Q ss_pred ceeeHHHHHHHHhcc----------------------CChhhHHHHhhcCCCC----------------Cc---------
Q 005136 384 HVVSWNSMIGGYGLN----------------------GQMEEAKELFDNMPKR----------------ND--------- 416 (712)
Q Consensus 384 ~~~~~~~l~~~~~~~----------------------~~~~~a~~~~~~~~~~----------------~~--------- 416 (712)
++..+..++..|.+. .+..+..++.....+. ..
T Consensus 378 ~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~ 457 (1088)
T KOG4318|consen 378 NVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHL 457 (1088)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhH
Confidence 233444444333221 1112222222222110 01
Q ss_pred --ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHH--cCCCCchhhHHHH
Q 005136 417 --VSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIK--LGFPYDVFLGTAL 492 (712)
Q Consensus 417 --~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l 492 (712)
..-+.++..++..-+..+++..-+.....- -| ..|..+|.-++.....+.|..+.+++.. ..+..+...+..+
T Consensus 458 irdi~~ql~l~l~se~n~lK~l~~~ekye~~l-f~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l 534 (1088)
T KOG4318|consen 458 IRDIANQLHLTLNSEYNKLKILCDEEKYEDLL-FA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSL 534 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHH
Confidence 123445555666555555554333333221 11 5788999999999999999999988864 3455677788889
Q ss_pred HHHHHhcCChHHHHHHhccCCCC-----C-cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccC
Q 005136 493 TDTYAKSGDIESSRRVFDRMPDK-----N-EISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSG 566 (712)
Q Consensus 493 ~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 566 (712)
.+.+.+.+....+..++.++.+. + ..++-.+++..+..|+.+...++.+-+...|+..+ .-++....+.+
T Consensus 535 ~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkd 610 (1088)
T KOG4318|consen 535 QDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKD 610 (1088)
T ss_pred HHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeecc
Confidence 99999999999999999988742 1 22344566777888999988888888888776553 33444556777
Q ss_pred cHHHHHHHHHhcchhcCCCC-chHHHHHHHH------------------HhhhcCChHHHHHHHHhCCC-----------
Q 005136 567 LVDKGLKYFNSMEPIYNIKP-NGRHYTCVVD------------------MLSRSGRLSEAEDFINSMPF----------- 616 (712)
Q Consensus 567 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~------------------~~~~~g~~~~A~~~~~~~~~----------- 616 (712)
+...|.+.++....++...| +...+..++. .|.++|+..+|.++.+.-+.
T Consensus 611 d~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~d 690 (1088)
T KOG4318|consen 611 DQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTD 690 (1088)
T ss_pred chhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccc
Confidence 88888888777766655555 3444444333 26677777777777765421
Q ss_pred ----CC---------CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHH
Q 005136 617 ----EP---------DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRK 678 (712)
Q Consensus 617 ----~p---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~ 678 (712)
.| +......++..|.+.|+++.|..++.+.- ..| ++.....|+.++.+...-.+.-+++.
T Consensus 691 e~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q-V~k-~~~~l~~LAsIlr~~n~evdvPe~q~ 763 (1088)
T KOG4318|consen 691 EGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ-VSK-SPMKLFHLASILRRMNEEVDVPEIQA 763 (1088)
T ss_pred cCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc-CCc-chHHHHHHHHHHHhhchhccchhHHH
Confidence 11 01112346667777888888888887765 333 36677777777776665444444433
No 31
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=8e-15 Score=156.57 Aligned_cols=438 Identities=11% Similarity=0.051 Sum_probs=255.2
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHh-hHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChH
Q 005136 158 GFVQNGFSFEALKLFLKLLESGVKPNEV-TFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVD 236 (712)
Q Consensus 158 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 236 (712)
...+.|+++.|++.|++..+. .|+.. ....++..+...|+.++|+..++.... ..+........+...+...|+++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHH
Confidence 346777777777777777764 33321 122666666666777777777777661 11122222333345666667777
Q ss_pred HHHHHHhhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHh--cCChhHHHHHHHHHHhCC
Q 005136 237 LARSVFDRMEK--R-DVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQ--SGYPEEAFRLFRQMTRYS 311 (712)
Q Consensus 237 ~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~m~~~~ 311 (712)
.|.++|+++.+ | +...+..++..+...++.++|+..++++...++.....+..++.. .++..+|++.++++.+..
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 77777777765 2 233455555666666777777777776665433322223333333 344444677777766632
Q ss_pred CCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHH
Q 005136 312 FKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSM 391 (712)
Q Consensus 312 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 391 (712)
+-+...+..+..++.+.|-...|.++...-. +.++-...... ..+.|.+..+...........-+.
T Consensus 200 -P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p------~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~~~~~r~~-- 265 (822)
T PRK14574 200 -PTSEEVLKNHLEILQRNRIVEPALRLAKENP------NLVSAEHYRQL-----ERDAAAEQVRMAVLPTRSETERFD-- 265 (822)
T ss_pred -CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc------cccCHHHHHHH-----HHHHHHHHHhhcccccccchhhHH--
Confidence 2244555666666666666666665544322 11110000000 000000000000000000000000
Q ss_pred HHHHhccCChhhHHHHhhcCCC-----CCcc-----cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005136 392 IGGYGLNGQMEEAKELFDNMPK-----RNDV-----SWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCAS 461 (712)
Q Consensus 392 ~~~~~~~~~~~~a~~~~~~~~~-----~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~ 461 (712)
-.+.|+.-++.+.. |... +..-.+-++...+++.++++.|+.+...|.+....+-..+.++|
T Consensus 266 --------~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~aday 337 (822)
T PRK14574 266 --------IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAY 337 (822)
T ss_pred --------HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Confidence 11222222222221 2111 12233445666777777788888887777654455667777778
Q ss_pred hccCchHHHHHHHHHHHHcC-----CCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCc------------------c
Q 005136 462 ASVASLEKGKDLHGKIIKLG-----FPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNE------------------I 518 (712)
Q Consensus 462 ~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------------------~ 518 (712)
...+.+++|..++..+.... .+++......|.-+|...+++++|..+++.+.+..+ .
T Consensus 338 l~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~ 417 (822)
T PRK14574 338 IDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIE 417 (822)
T ss_pred HhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHH
Confidence 88888888888887776532 122333346677777788888888888777653111 1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHH
Q 005136 519 SWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVD 596 (712)
Q Consensus 519 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 596 (712)
....++..+...|+..+|++.++++.. ..| |......+...+...|.+..|.+.++.+. .+.| +..+....+.
T Consensus 418 ~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~---~l~P~~~~~~~~~~~ 492 (822)
T PRK14574 418 GQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVE---SLAPRSLILERAQAE 492 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh---hhCCccHHHHHHHHH
Confidence 234467778899999999999999988 455 56777888889999999999999998776 4577 6777888899
Q ss_pred HhhhcCChHHHHHHHHhC-CCCCCHHHHHH
Q 005136 597 MLSRSGRLSEAEDFINSM-PFEPDSNAWAS 625 (712)
Q Consensus 597 ~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 625 (712)
++...|++.+|..+.+++ ...|+......
T Consensus 493 ~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~ 522 (822)
T PRK14574 493 TAMALQEWHQMELLTDDVISRSPEDIPSQE 522 (822)
T ss_pred HHHhhhhHHHHHHHHHHHHhhCCCchhHHH
Confidence 999999999999998877 33455443333
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=1.8e-14 Score=132.95 Aligned_cols=430 Identities=12% Similarity=0.115 Sum_probs=282.5
Q ss_pred chhhHHHHHHHhhccchhhhhhhHHHHHHHhCCCCcchhhhHHHHHH---hcCCChhHhHHHHhhcCC---CCcchHHHH
Q 005136 20 YIETCLCLLKDITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMY---LGSRKSLEANEIVKDLNG---FDLVVHNCM 93 (712)
Q Consensus 20 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~---~~~~~~~~l 93 (712)
...+=+.|++ ...+|.+..+--+|+.|...|.+.+..+...|.+.- ..+.-+..-.+.|-.+.. .+..+|
T Consensus 115 ~V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW--- 190 (625)
T KOG4422|consen 115 QVETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW--- 190 (625)
T ss_pred hhcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc---
Confidence 3445667776 456788999999999999999998888877776643 333333333455555533 444566
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHccCChHHHHHHhhhCCC----CCcccHHHHHHHHHhcCChhHHH
Q 005136 94 INANIQWGNLEEAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERNPF----QNVISWTAAICGFVQNGFSFEAL 169 (712)
Q Consensus 94 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~ 169 (712)
+.|++.+ ++-+...+.+.++..+|.++++--..+.|.+++++... -+..+||.+|.+-. +..-.
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGK 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccH
Confidence 3455433 55556667778899999999999999999999987654 35567777776532 23337
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHhcccchHH----HHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHH-HHHHHhh
Q 005136 170 KLFLKLLESGVKPNEVTFSSICKACAEINDFRL----GLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDL-ARSVFDR 244 (712)
Q Consensus 170 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~ 244 (712)
+++.+|....+.||..|||+++.+.++.|+++. |.+++.+|++.|+.|...+|..+|..+.+.++..+ |..++..
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 899999999999999999999999999997665 56778889999999999999999999998887644 3444433
Q ss_pred cCC------------CCcchHHHHHHHHHhcCCHHHHHHHHhhCCC--------C---CceeHHHHHHHHHhcCChhHHH
Q 005136 245 MEK------------RDVVSWTVILDVFIEMGDLGEARRIFDEMPE--------R---NEVSWSVMIARYNQSGYPEEAF 301 (712)
Q Consensus 245 ~~~------------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------~---~~~~~~~l~~~~~~~~~~~~a~ 301 (712)
+.. .|...+..-+..|....+.+-|.++-.-+.. + ...-|..+....++....+...
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 321 2444667778888888888888777654432 1 2234667777888888999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCC
Q 005136 302 RLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKD 381 (712)
Q Consensus 302 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 381 (712)
..|+.|.-+-+-|+..+...++++....+.++-..++|.+++..|.........-++..+++..-
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~--------------- 483 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL--------------- 483 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC---------------
Confidence 99999998888899999999999999999999999999999888755444444333333333220
Q ss_pred CCcee---eHHHHHHHHhccCChhhHHHHhhcCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCC----CCCHH
Q 005136 382 VAHVV---SWNSMIGGYGLNGQMEEAKELFDNMPK--RNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGE----IPNKS 452 (712)
Q Consensus 382 ~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~----~p~~~ 452 (712)
.|+.. -+.....-++ ....+.....-.++.+ -.....+..+..+.+.|+.++|.++|.-+...+- .|...
T Consensus 484 hp~tp~r~Ql~~~~ak~a-ad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~ln 562 (625)
T KOG4422|consen 484 HPLTPEREQLQVAFAKCA-ADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLN 562 (625)
T ss_pred CCCChHHHHHHHHHHHHH-HHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchh
Confidence 01111 1111111110 0001111111111111 1334455555556666666666666666654431 23333
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHcC
Q 005136 453 TFSSVLCASASVASLEKGKDLHGKIIKLG 481 (712)
Q Consensus 453 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 481 (712)
...-+++.....++...|...++.+...+
T Consensus 563 Am~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 563 AMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 34444555555555666666665554444
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.75 E-value=5.4e-12 Score=123.18 Aligned_cols=511 Identities=14% Similarity=0.135 Sum_probs=337.4
Q ss_pred HHHHHhhCCCC---ChhHHHHHHHHHHccCChHHHHHHhhhCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 005136 106 AQRLFDGMPER---NEVSWTALISGFMKHGRVEESMWYFERNP---FQNVISWTAAICGFVQNGFSFEALKLFLKLLESG 179 (712)
Q Consensus 106 A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 179 (712)
=.+++++..+. ++..|... ...-+.++|+-++.+.. +.+. .|.-++++...|+.|..++++.++.
T Consensus 365 K~RVlRKALe~iP~sv~LWKaA----VelE~~~darilL~rAveccp~s~----dLwlAlarLetYenAkkvLNkaRe~- 435 (913)
T KOG0495|consen 365 KKRVLRKALEHIPRSVRLWKAA----VELEEPEDARILLERAVECCPQSM----DLWLALARLETYENAKKVLNKAREI- 435 (913)
T ss_pred HHHHHHHHHHhCCchHHHHHHH----HhccChHHHHHHHHHHHHhccchH----HHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 34555555542 23333332 33455666777776533 2233 3444556667788888888888875
Q ss_pred CCCCHhhHHHHHHHHhcccchHHHHHHHHHHHH----hCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHH
Q 005136 180 VKPNEVTFSSICKACAEINDFRLGLSVFGLIFK----AGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTV 255 (712)
Q Consensus 180 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 255 (712)
++.+...|.+-...--..|+.+...+++...+. .|+..+..-|-.=...|-..|..-.+..+...+
T Consensus 436 iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~av---------- 505 (913)
T KOG0495|consen 436 IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAV---------- 505 (913)
T ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHH----------
Confidence 666777777766666677888887777765433 455555555554444444444444444443322
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCChhh
Q 005136 256 ILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKP-NTSCFSIVLSALASLKALRS 334 (712)
Q Consensus 256 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~ 334 (712)
..-|.-+ +.-..+|..-...|.+.+.++-|..+|...++ +.| +...+......=-..|..+.
T Consensus 506 -----igigvEe----------ed~~~tw~~da~~~~k~~~~~carAVya~alq--vfp~k~slWlra~~~ek~hgt~Es 568 (913)
T KOG0495|consen 506 -----IGIGVEE----------EDRKSTWLDDAQSCEKRPAIECARAVYAHALQ--VFPCKKSLWLRAAMFEKSHGTRES 568 (913)
T ss_pred -----Hhhcccc----------chhHhHHhhhHHHHHhcchHHHHHHHHHHHHh--hccchhHHHHHHHHHHHhcCcHHH
Confidence 2111100 01122455555555566666666666655554 333 23334444433344455666
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCC--
Q 005136 335 GMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMP-- 412 (712)
Q Consensus 335 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-- 412 (712)
...+++.....- +-....|.....-+-..|++..|+.++....+..+.+...|..-+.....+.+++.|..+|.+..
T Consensus 569 l~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 569 LEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred HHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 666666655542 22334455555555566666666666666666666666666666666666666666666666554
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHH
Q 005136 413 KRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNK-STFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTA 491 (712)
Q Consensus 413 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 491 (712)
.+....|.--+..--..++.++|.+++++.++. -|+. ..|..+-..+.+.++.+.|...|..=.+. ++..+..+-.
T Consensus 648 sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWll 724 (913)
T KOG0495|consen 648 SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLL 724 (913)
T ss_pred CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHH
Confidence 244555655566666667777778888887774 4554 45666666777788888887776554432 4667788888
Q ss_pred HHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcH
Q 005136 492 LTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLV 568 (712)
Q Consensus 492 l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 568 (712)
|...-.+.|.+-.|..++++.. ..+...|-..+..-.+.|+.+.|..++.+..+. .+.+...|.--|...-+.+.-
T Consensus 725 LakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rk 803 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRK 803 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccc
Confidence 8888899999999999999876 346778999999999999999999999888874 344556677777777777776
Q ss_pred HHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 005136 569 DKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNL 646 (712)
Q Consensus 569 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 646 (712)
...+..+++.. .|++....++..+....++++|.+.|.+. ...|| ..+|..+...+.++|.-+.-.+++.+.
T Consensus 804 Tks~DALkkce------~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 804 TKSIDALKKCE------HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred hHHHHHHHhcc------CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 66666666554 47788889999999999999999999998 66666 677888888899999999999999999
Q ss_pred hccCCCCCchHHHHHHH
Q 005136 647 WKLAEEHPAGYVLLSNI 663 (712)
Q Consensus 647 ~~~~p~~~~~~~~l~~~ 663 (712)
..-+|.+...+....+-
T Consensus 878 ~~~EP~hG~~W~avSK~ 894 (913)
T KOG0495|consen 878 ETAEPTHGELWQAVSKD 894 (913)
T ss_pred hccCCCCCcHHHHHhhh
Confidence 99999988777665544
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=8.8e-16 Score=142.43 Aligned_cols=472 Identities=12% Similarity=0.105 Sum_probs=294.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhH-HHHHHHHhcccchHHHHHHHHHHHHhCCCCCc----cHHHHHHHH
Q 005136 154 AAICGFVQNGFSFEALKLFLKLLESGVKPNEVTF-SSICKACAEINDFRLGLSVFGLIFKAGFEKHV----SVCNSLITL 228 (712)
Q Consensus 154 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~ 228 (712)
.+..-|..+....+|+..|+-..+...-|+...+ ..+...+.+.+.+.+|.++++..+..-+..+- .+.+.+...
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 3445566677888999999888887777776543 23556677888899999999988876543333 334444455
Q ss_pred HHccCChHHHHHHHhhcCC--CCcchHHHHHHHHHhcCCHHHHHHHHhhCCC----CCc--------eeHHHHHHHHHhc
Q 005136 229 SLKMGEVDLARSVFDRMEK--RDVVSWTVILDVFIEMGDLGEARRIFDEMPE----RNE--------VSWSVMIARYNQS 294 (712)
Q Consensus 229 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~--------~~~~~l~~~~~~~ 294 (712)
+.+.|+++.|+.-|+...+ |+..+-..|+-++..-|+.++..+.|.+|.. +|. ..-..|+.--.++
T Consensus 286 fiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~n 365 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKN 365 (840)
T ss_pred EEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhh
Confidence 7788999999999998776 6666655666666777888888888887753 111 1111222221111
Q ss_pred CC-----------hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 005136 295 GY-----------PEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSK 363 (712)
Q Consensus 295 ~~-----------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 363 (712)
.. .++++-.--+++.--+.|+-.. ..+-+.+.+.......+..+.. -.-.-.+.+
T Consensus 366 d~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~------------g~dwcle~lk~s~~~~la~dle--i~ka~~~lk 431 (840)
T KOG2003|consen 366 DHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA------------GCDWCLESLKASQHAELAIDLE--INKAGELLK 431 (840)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc------------ccHHHHHHHHHhhhhhhhhhhh--hhHHHHHHh
Confidence 11 1111111111111112222100 0111122221111111111111 112235788
Q ss_pred cCChHHHHHHHHhhhcCCCC--ceeeHHHHHHHHhc-cCChhhHHHHhhcCCCC---CcccHHHHHHHHHhcCChhHHHH
Q 005136 364 CGETKDGRLVFDSIVEKDVA--HVVSWNSMIGGYGL-NGQMEEAKELFDNMPKR---NDVSWSAIISGYLEHKQFDLVFA 437 (712)
Q Consensus 364 ~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~ 437 (712)
.|+++.|.++++-+.+.+.. +..+-|..+--|.+ ..++..|...-+..... ++.....-.+.....|++++|.+
T Consensus 432 ~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~ 511 (840)
T KOG2003|consen 432 NGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAE 511 (840)
T ss_pred ccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHH
Confidence 99999999999888776642 22222222222333 33566664444433322 22222222233334455555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC---C
Q 005136 438 VFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP---D 514 (712)
Q Consensus 438 ~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~ 514 (712)
.|++.+... ..-....|+ +.-.+...|++++|...|-.+. .
T Consensus 512 ~ykeal~nd-----------------------------------asc~ealfn-iglt~e~~~~ldeald~f~klh~il~ 555 (840)
T KOG2003|consen 512 FYKEALNND-----------------------------------ASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILL 555 (840)
T ss_pred HHHHHHcCc-----------------------------------hHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHH
Confidence 555554432 111111111 2223455677777777766554 3
Q ss_pred CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHH
Q 005136 515 KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTC 593 (712)
Q Consensus 515 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 593 (712)
.+..+...+...|....+...|++++.+.... ++.|...+..|...|-+.|+-..|.+.+-+-- ..-| +..+...
T Consensus 556 nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsy---ryfp~nie~iew 631 (840)
T KOG2003|consen 556 NNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSY---RYFPCNIETIEW 631 (840)
T ss_pred hhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcc---cccCcchHHHHH
Confidence 45556666777888888999999999887773 34456778889999999999999988776543 4556 8999999
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHH-HhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCch
Q 005136 594 VVDMLSRSGRLSEAEDFINSM-PFEPDSNAWASLLSG-CKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWI 671 (712)
Q Consensus 594 l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 671 (712)
|+..|....-+++|+.+|++. -+.|+..-|..++.. +.+.|+++.|..+++......|++...+..|..++...|. .
T Consensus 632 l~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl-~ 710 (840)
T KOG2003|consen 632 LAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL-K 710 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc-h
Confidence 999999999999999999998 568999999988877 4689999999999999999999999999999999998885 3
Q ss_pred hHHHHHHHH
Q 005136 672 DAMNVRKLM 680 (712)
Q Consensus 672 eA~~~~~~~ 680 (712)
+|.++-+++
T Consensus 711 d~key~~kl 719 (840)
T KOG2003|consen 711 DAKEYADKL 719 (840)
T ss_pred hHHHHHHHH
Confidence 455554443
No 35
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=2e-13 Score=126.17 Aligned_cols=435 Identities=12% Similarity=0.123 Sum_probs=283.8
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHh--cccchHHH-HHHHHHHHHhCCCCCccHHHHH
Q 005136 149 VISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACA--EINDFRLG-LSVFGLIFKAGFEKHVSVCNSL 225 (712)
Q Consensus 149 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~--~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l 225 (712)
+.+=|.++.. ...|....+.-+|++|.+.|+..+...-..|++..+ .+.+..-+ .+.|-.|.+.| ..+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 3455555553 557889999999999999998877766555554332 33332211 22233333333 2222232
Q ss_pred HHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCC----CceeHHHHHHHHHhcCChhHHH
Q 005136 226 ITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPER----NEVSWSVMIARYNQSGYPEEAF 301 (712)
Q Consensus 226 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~ 301 (712)
+.|++.+ ++-+.......++..+|.++++-...+.|.+++++.... +..+||.+|.+-.- ..-.
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGK 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccH
Confidence 3344333 555555567789999999999999999999999988753 55577877765432 2237
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCChhh----HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHH-HHHHHHh
Q 005136 302 RLFRQMTRYSFKPNTSCFSIVLSALASLKALRS----GMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKD-GRLVFDS 376 (712)
Q Consensus 302 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~ 376 (712)
+++.+|.+..+.||..|||.++.+.++.|+++. |.+++.+|++.|++|...+|..++..+++-++..+ |..++.+
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 899999999999999999999999999997665 46788889999999999999999999998888755 4444444
Q ss_pred hh----cCC-----CCceeeHHHHHHHHhccCChhhHHHHhhcCCC--------C---CcccHHHHHHHHHhcCChhHHH
Q 005136 377 IV----EKD-----VAHVVSWNSMIGGYGLNGQMEEAKELFDNMPK--------R---NDVSWSAIISGYLEHKQFDLVF 436 (712)
Q Consensus 377 ~~----~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~---~~~~~~~l~~~~~~~~~~~~a~ 436 (712)
+. .+. +.+...+..-+..|.+..+.+-|..+-.-+.. + ...-|..+....|+....+.-.
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 222 22455667777888888888877766554442 1 1234666778888888899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCC
Q 005136 437 AVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKN 516 (712)
Q Consensus 437 ~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 516 (712)
..|+.|.-.-+-|+..+...++++....+.++-...+|..++..|..........+...+++.. ..|+
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~ 486 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPL 486 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCC
Confidence 9999998887889999999999999999999999999988888775555544444444444332 0122
Q ss_pred cchHHHHHHHHH--HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHH--
Q 005136 517 EISWTVMVRGLA--ESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYT-- 592 (712)
Q Consensus 517 ~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-- 592 (712)
...-..+-.... ...-.+.....-.++.+..+.| ...+.++-.+.+.|..++|.++|..+.++..--|-....+
T Consensus 487 tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm 564 (625)
T KOG4422|consen 487 TPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAM 564 (625)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhH
Confidence 111111111111 0111112222334455433333 3445555556788888888888887754444444444444
Q ss_pred -HHHHHhhhcCChHHHHHHHHhC
Q 005136 593 -CVVDMLSRSGRLSEAEDFINSM 614 (712)
Q Consensus 593 -~l~~~~~~~g~~~~A~~~~~~~ 614 (712)
.+.+.-.+.+....|..+++-+
T Consensus 565 ~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 565 AELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Confidence 4444555666777777776655
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=9.4e-12 Score=116.89 Aligned_cols=425 Identities=13% Similarity=0.169 Sum_probs=235.1
Q ss_pred cchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCC--CCcc-hHHHHHHHHHhcCCHHHHHHHHh
Q 005136 198 NDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEK--RDVV-SWTVILDVFIEMGDLGEARRIFD 274 (712)
Q Consensus 198 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~a~~~~~ 274 (712)
+++..|..+|+..+... .-+...+-..+.+-.++..+..|..++++... |.+. .|.-.+..--..|++..|.++|+
T Consensus 87 ~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqife 165 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 33444444444444332 22333444444444444444555555544433 2211 23333333334455555555555
Q ss_pred hCC--CCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHc-CC-CCc
Q 005136 275 EMP--ERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKI-GI-EKD 350 (712)
Q Consensus 275 ~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~-~~~ 350 (712)
+-. +|+..+|.+.|..-.+-+..+.|..+|+...- +.|+..+|......=.+.|....+..+++...+. |- ..+
T Consensus 166 rW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~ 243 (677)
T KOG1915|consen 166 RWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEA 243 (677)
T ss_pred HHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHH
Confidence 543 36666666666666666666666666666654 4566666666666666666666666666665553 11 112
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCc--eeeHHHHHHHHhccCChhhHHHHh--------hcCCCC---Ccc
Q 005136 351 VFISNALIDLYSKCGETKDGRLVFDSIVEKDVAH--VVSWNSMIGGYGLNGQMEEAKELF--------DNMPKR---NDV 417 (712)
Q Consensus 351 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~--------~~~~~~---~~~ 417 (712)
...+.+....-.++..++.|..+|+-..+.-|.+ ...|..+..---+-|+.....+.. +.+.+. |-.
T Consensus 244 e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYD 323 (677)
T KOG1915|consen 244 EILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYD 323 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCch
Confidence 3445555555556666777777777666554422 233333333323334433322221 222222 445
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--H---HHHH-HH-H---HhccCchHHHHHHHHHHHHcCCCCchh
Q 005136 418 SWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKS--T---FSSV-LC-A---SASVASLEKGKDLHGKIIKLGFPYDVF 487 (712)
Q Consensus 418 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~--~---~~~l-l~-~---~~~~~~~~~a~~~~~~~~~~~~~~~~~ 487 (712)
+|...++.--..|+.+...++|++.+.. ++|-.. . |.-| |. + -....+.+.+.++++...+. +|....
T Consensus 324 sWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkF 401 (677)
T KOG1915|consen 324 SWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKF 401 (677)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccc
Confidence 6666777777778888888888888875 455321 1 1111 11 1 12456777777777777772 444555
Q ss_pred hHHHHHHHH----HhcCChHHHHHHhccCCC--CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 005136 488 LGTALTDTY----AKSGDIESSRRVFDRMPD--KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLF 560 (712)
Q Consensus 488 ~~~~l~~~~----~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 560 (712)
+|..+--+| .++.++..|.+++..... |...++...|..-.+.++++...+++++.++ ..| |..+|.....
T Consensus 402 tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~kyaE 479 (677)
T KOG1915|consen 402 TFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSKYAE 479 (677)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHHHHH
Confidence 555444333 356677777777776653 4555666666666777777777777777777 344 4466666666
Q ss_pred HhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 005136 561 ACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPDSNAWASLLSG 629 (712)
Q Consensus 561 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~ 629 (712)
.=...|+.+.|..+|+-+.+...+......|...++.-...|.++.|..+++++ ...+-...|.++...
T Consensus 480 lE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~f 549 (677)
T KOG1915|consen 480 LETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKF 549 (677)
T ss_pred HHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHH
Confidence 666677777777777777643333333445555555556677777777777776 333444456555443
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.64 E-value=5.3e-16 Score=149.19 Aligned_cols=256 Identities=14% Similarity=0.168 Sum_probs=112.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC
Q 005136 422 IISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSS-VLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSG 500 (712)
Q Consensus 422 l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 500 (712)
+...+.+.|++++|++++++......+|+...|.. +...+...++++.|...++++...+.. ++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 34555566666666777765544432344444443 334555677788888888887765422 55566667766 6888
Q ss_pred ChHHHHHHhccCC--CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhcccCcHHHHHHHHHh
Q 005136 501 DIESSRRVFDRMP--DKNEISWTVMVRGLAESGYAKESINLFEEMEKTS-ITPNELTILSVLFACSHSGLVDKGLKYFNS 577 (712)
Q Consensus 501 ~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 577 (712)
++++|.+++...- .+++..+..++..+...++++++.++++.+.... ..++...|..+...+.+.|+.++|++.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999988887664 3456677788888999999999999999987643 244666788888899999999999999999
Q ss_pred cchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCC
Q 005136 578 MEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSMP--FEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHP 654 (712)
Q Consensus 578 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 654 (712)
..+. .| |......++..+...|+.+++.++++... ...++..+..+..++...|+.++|..+++++.+..|+||
T Consensus 172 al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 172 ALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 9844 78 68888999999999999999888887762 234556778888889999999999999999999999999
Q ss_pred chHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 655 AGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 655 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
.++..++.++...|+.++|.++.+++.+
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999887654
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=1e-12 Score=123.86 Aligned_cols=215 Identities=13% Similarity=0.116 Sum_probs=175.3
Q ss_pred hccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHH
Q 005136 462 ASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESIN 538 (712)
Q Consensus 462 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~ 538 (712)
.-.|+.-.+..-++..++....+ ...|-.+..+|....+.++-+..|+... +.++.+|..-...+.-.+++++|..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 34678888888899888865333 3336667777999999999999999876 3467788888888888999999999
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC-CC
Q 005136 539 LFEEMEKTSITPNE-LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM-PF 616 (712)
Q Consensus 539 ~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 616 (712)
-|++.+. +.|+. ..|..+.-+..+.+.++++...|++...+ ++..+..|+..+.++...+++++|.+.|+.. ..
T Consensus 416 DF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 416 DFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999998 67754 56777777778899999999999999854 3346889999999999999999999999986 44
Q ss_pred CCC-------H-HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHH
Q 005136 617 EPD-------S-NAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMT 681 (712)
Q Consensus 617 ~p~-------~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 681 (712)
.|+ . ...+..+....-.+++..|+.+++++.+++|....++..|+.+..++|+.++|+++|++..
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 444 1 1122233334456999999999999999999999999999999999999999999999754
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=8.3e-13 Score=123.63 Aligned_cols=320 Identities=12% Similarity=0.139 Sum_probs=150.7
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH--HHHHHH
Q 005136 249 DVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFS--IVLSAL 326 (712)
Q Consensus 249 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~ 326 (712)
|...+......+.+.|....|+..|......-+..|.+.+....-..+.+.+..+ . .|.+.|...+. .+..++
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l----~-~~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSIL----V-VGLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHH----H-hcCcccchHHHHHHHHHHH
Confidence 3333344444556777788888888777665455554444332222222222111 1 12222221111 233344
Q ss_pred hccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCC---CceeeHHHHHHHHhccCChhh
Q 005136 327 ASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDV---AHVVSWNSMIGGYGLNGQMEE 403 (712)
Q Consensus 327 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 403 (712)
......+++.+-.......|++.+...-+....+.-...+++.|+.+|+++.+.+| .+..+|..++-.--......-
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~ 317 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSY 317 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHH
Confidence 44456677777777777777776766666666677778888999999998888876 355566555433222111111
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCC
Q 005136 404 AKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFP 483 (712)
Q Consensus 404 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 483 (712)
--...-.+.+-.+.|...+.+-|.-.++.++|...|++.++.+ |.
T Consensus 318 LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~--------------------------------- 362 (559)
T KOG1155|consen 318 LAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN--PK--------------------------------- 362 (559)
T ss_pred HHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC--cc---------------------------------
Confidence 1111111222233344444444444444444444444444322 11
Q ss_pred CchhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 005136 484 YDVFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVL 559 (712)
Q Consensus 484 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 559 (712)
....++.+..-|....+...|.+-++... +.|-..|-.|.++|...+-..=|+-.|++..+ ++| |...|..|.
T Consensus 363 -~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG 439 (559)
T KOG1155|consen 363 -YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALG 439 (559)
T ss_pred -hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHH
Confidence 11122222233333344444444444333 22333444444455444444444444444444 333 223444444
Q ss_pred HHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHh
Q 005136 560 FACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINS 613 (712)
Q Consensus 560 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 613 (712)
.+|.+.++.++|++.|.+... .-+.+...+..|++.|.+.++.++|...+++
T Consensus 440 ~CY~kl~~~~eAiKCykrai~--~~dte~~~l~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 440 ECYEKLNRLEEAIKCYKRAIL--LGDTEGSALVRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred HHHHHhccHHHHHHHHHHHHh--ccccchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 444444445555544444431 1112334444444444444444444444443
No 40
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=9.5e-11 Score=110.29 Aligned_cols=436 Identities=14% Similarity=0.157 Sum_probs=285.2
Q ss_pred hhHHHHHHHHHHccCChHHHHHHhhhCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHh-hHHHHHHH
Q 005136 118 EVSWTALISGFMKHGRVEESMWYFERNP---FQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEV-TFSSICKA 193 (712)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~ 193 (712)
...|-...+.-..++++..|+.+|++.. ..+...|...+..-.++.....|..++++.... -|.+. .+...+..
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ym 150 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHH
Confidence 3344444555556777777888887643 356667777777777888888888888877753 33332 23333444
Q ss_pred HhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcC--CCCcchHHHHHHHHHhcCCHHHHHH
Q 005136 194 CAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRME--KRDVVSWTVILDVFIEMGDLGEARR 271 (712)
Q Consensus 194 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~ 271 (712)
--..|+...|.++|+.-.+ ..|+...+++.|..-.+-..++.|..++++.. .|++.+|....+--.+.|+.
T Consensus 151 EE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~----- 223 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNV----- 223 (677)
T ss_pred HHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcH-----
Confidence 4456777777777776554 45777777777777777777777777777554 24554544444444444444
Q ss_pred HHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHhccCChhhHHHHHHHHHHcCC
Q 005136 272 IFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTS----CFSIVLSALASLKALRSGMHVHAHVLKIGI 347 (712)
Q Consensus 272 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 347 (712)
..|..+|....+. ..|.. .|.+....=.+...++.|.-++...++.-
T Consensus 224 --------------------------~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~- 274 (677)
T KOG1915|consen 224 --------------------------ALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI- 274 (677)
T ss_pred --------------------------HHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 4444444444331 11111 12222222223445555555555555431
Q ss_pred CCc--HHHHHHHHHHHHhcCChHHHH--------HHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcc
Q 005136 348 EKD--VFISNALIDLYSKCGETKDGR--------LVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDV 417 (712)
Q Consensus 348 ~~~--~~~~~~l~~~~~~~g~~~~A~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 417 (712)
+.+ ...|..+...--+.|+..... --++.+...++-+..+|--.++.....|+.+...+++++....-+.
T Consensus 275 pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp 354 (677)
T KOG1915|consen 275 PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPP 354 (677)
T ss_pred CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCc
Confidence 111 334444444444445433322 2356677778888899999999999999999999999988742111
Q ss_pred -----cHHHHH--------HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh----ccCchHHHHHHHHHHHHc
Q 005136 418 -----SWSAII--------SGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASA----SVASLEKGKDLHGKIIKL 480 (712)
Q Consensus 418 -----~~~~l~--------~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~ 480 (712)
.|...| -.-....+.+.+.++|+..++. ++....||.-+--.|+ ++.++..|.+++...+
T Consensus 355 ~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI-- 431 (677)
T KOG1915|consen 355 ASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI-- 431 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--
Confidence 122222 2224678999999999999883 5556677776655554 6789999999988765
Q ss_pred CCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHHHH
Q 005136 481 GFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPD---KNEISWTVMVRGLAESGYAKESINLFEEMEKTSI-TPNELTIL 556 (712)
Q Consensus 481 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~~~~~~ 556 (712)
|.-|...+|...++.-.+.++++.+..+++.... .+..+|......-...|+.+.|..+|+-.++... ......|.
T Consensus 432 G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwk 511 (677)
T KOG1915|consen 432 GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWK 511 (677)
T ss_pred ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHH
Confidence 5678889999999999999999999999998874 3666888888888899999999999999887431 22234455
Q ss_pred HHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHH
Q 005136 557 SVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDM 597 (712)
Q Consensus 557 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 597 (712)
..+..-...|.+++|..+++++.+. .+...+|-.++..
T Consensus 512 aYIdFEi~~~E~ekaR~LYerlL~r---t~h~kvWisFA~f 549 (677)
T KOG1915|consen 512 AYIDFEIEEGEFEKARALYERLLDR---TQHVKVWISFAKF 549 (677)
T ss_pred HhhhhhhhcchHHHHHHHHHHHHHh---cccchHHHhHHHH
Confidence 6666666789999999999999844 4555566655543
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3.9e-12 Score=119.24 Aligned_cols=330 Identities=13% Similarity=0.083 Sum_probs=250.8
Q ss_pred cCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcc-cHHHHH
Q 005136 345 IGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDV-SWSAII 423 (712)
Q Consensus 345 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l~ 423 (712)
.+...|...+-.....+.+.|....|+..|......-|-.-.+|..|.... .+.+.+..+.......+.. .-..+.
T Consensus 158 ~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~li---t~~e~~~~l~~~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 158 CGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELI---TDIEILSILVVGLPSDMHWMKKFFLK 234 (559)
T ss_pred hcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhh---chHHHHHHHHhcCcccchHHHHHHHH
Confidence 355567766666677788899999999999999887744444554444433 3334443333333322211 122345
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCC--CCchhhHHHHHHHHHhcCC
Q 005136 424 SGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGF--PYDVFLGTALTDTYAKSGD 501 (712)
Q Consensus 424 ~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 501 (712)
.++-...+.+++..-.......|.+-+...-+....+.-...++++|+.+|+++.+... -.|..+|..++-.-..+.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 56667778889999999999988877777777777777888999999999999998731 1255666666533222222
Q ss_pred hHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHhcch
Q 005136 502 IESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNE-LTILSVLFACSHSGLVDKGLKYFNSMEP 580 (712)
Q Consensus 502 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 580 (712)
+.--.+..-.+.+-.+.|..++.+-|.-.++.++|+..|++..+ +.|.. ..|+.+..-|....+...|++-++.+.
T Consensus 315 Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv- 391 (559)
T KOG1155|consen 315 LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV- 391 (559)
T ss_pred HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH-
Confidence 22222222233344566677778888899999999999999999 67765 557777788999999999999999998
Q ss_pred hcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchH
Q 005136 581 IYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGY 657 (712)
Q Consensus 581 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 657 (712)
.+.| |-..|.-|+++|.-.+.+.-|+-+|++. ..+| |+..|..+..+|.+.++.++|+..+++++.....+..++
T Consensus 392 --di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l 469 (559)
T KOG1155|consen 392 --DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSAL 469 (559)
T ss_pred --hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHH
Confidence 5678 8889999999999999999999999998 4555 688999999999999999999999999999888788999
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 658 VLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 658 ~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
..|+++|.+.++.++|...+++-++
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999998776
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=2.3e-13 Score=133.65 Aligned_cols=283 Identities=11% Similarity=0.084 Sum_probs=173.2
Q ss_pred ChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCC---CceeeHHHHHHHHhccCChhhHHHH
Q 005136 331 ALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDV---AHVVSWNSMIGGYGLNGQMEEAKEL 407 (712)
Q Consensus 331 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~ 407 (712)
+..+|...|..+.+. +.-+..+...+..+|...+++++|+.+|+.+.+..+ .+...|.+.+-.+-+.-...---+-
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 456677777763332 333446666777888888888888888888877665 3555666555433221111110011
Q ss_pred hhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchh
Q 005136 408 FDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVF 487 (712)
Q Consensus 408 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 487 (712)
+-.+....+.+|..+.++|.-+++++.|++.|++.++. .|+
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~------------------------------------- 453 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPR------------------------------------- 453 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCc-------------------------------------
Confidence 11111223444444444444444444444444444432 120
Q ss_pred hHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcccC
Q 005136 488 LGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNE-LTILSVLFACSHSG 566 (712)
Q Consensus 488 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 566 (712)
...+|+.+..-+.....+|.|...|+..+. +.|.. ..|..+...|.+.+
T Consensus 454 ----------------------------faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rhYnAwYGlG~vy~Kqe 503 (638)
T KOG1126|consen 454 ----------------------------FAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRHYNAWYGLGTVYLKQE 503 (638)
T ss_pred ----------------------------cchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchhhHHHHhhhhheeccc
Confidence 112333333334444555555555555544 33332 34556666677777
Q ss_pred cHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHH
Q 005136 567 LVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAV 643 (712)
Q Consensus 567 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 643 (712)
+++.|.-.|+++. .+.| +......++..+.+.|+.++|+.+++++ ...| ++......+..+...+++++|...+
T Consensus 504 k~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~L 580 (638)
T KOG1126|consen 504 KLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQEL 580 (638)
T ss_pred hhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHH
Confidence 7777777777766 5567 6677777788888888888888888877 2233 3444444555566788889999999
Q ss_pred HHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 005136 644 KNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 644 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 686 (712)
+++.++-|++..++..+|++|.+.|+.+.|+..+..+.+-.++
T Consensus 581 EeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 581 EELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 9999999999999999999999999999999988888775443
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.58 E-value=9.6e-12 Score=116.03 Aligned_cols=256 Identities=8% Similarity=0.102 Sum_probs=184.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh--ccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC
Q 005136 424 SGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASA--SVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGD 501 (712)
Q Consensus 424 ~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 501 (712)
..+.+.|+++.|+++++-+.+..-+.-...-+.+-..+. --.++..|.++-+...... ..+......-.......|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 346778888888888887766543333322222222222 2335556666655544321 1122222222223345689
Q ss_pred hHHHHHHhccCCCCCcchHHHHH---HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhc
Q 005136 502 IESSRRVFDRMPDKNEISWTVMV---RGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSM 578 (712)
Q Consensus 502 ~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 578 (712)
++.|.+.+++....|...-.+|. -.+...|+.++|+..|-++..- +..+...+..+...|....+...|++++-+.
T Consensus 506 ~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 99999999999988776554444 3467889999999999887663 3456677778888999999999999999887
Q ss_pred chhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHh-CCC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCc
Q 005136 579 EPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINS-MPF-EPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPA 655 (712)
Q Consensus 579 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 655 (712)
. .+-| |+..+..|++.|-+.|+..+|.+..-. .+. .-+..+...+...|....-+++++.+++++.-+.|+-..
T Consensus 585 ~---slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k 661 (840)
T KOG2003|consen 585 N---SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK 661 (840)
T ss_pred c---ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence 6 4566 889999999999999999999987544 454 446777787877788888899999999999999999666
Q ss_pred hHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 656 GYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 656 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
.....+.++.+.|++.+|.++++..-.+-
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRKF 690 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 66667777889999999999999887654
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.57 E-value=4.2e-12 Score=127.78 Aligned_cols=215 Identities=12% Similarity=0.036 Sum_probs=106.6
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchh-------hHHHHHHHHHh
Q 005136 426 YLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVF-------LGTALTDTYAK 498 (712)
Q Consensus 426 ~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~ 498 (712)
+...|+++.|...++++.+.. +-+...+..+...|.+.|+++++..++..+.+.+..++.. .+..++.....
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~ 241 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMA 241 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555443 2234444455555555555555555555555543332111 11122222223
Q ss_pred cCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHH
Q 005136 499 SGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYF 575 (712)
Q Consensus 499 ~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 575 (712)
..+.+...++++.++ +.++.....+...+...|+.++|.+++++..+ ..|+.... ++.+....++.+++++..
T Consensus 242 ~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l~--~l~~~l~~~~~~~al~~~ 317 (398)
T PRK10747 242 DQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERLV--LLIPRLKTNNPEQLEKVL 317 (398)
T ss_pred hcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHH--HHHhhccCCChHHHHHHH
Confidence 333444555555544 23445555566666666666666666666655 23333211 122223345566666666
Q ss_pred HhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 005136 576 NSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWK 648 (712)
Q Consensus 576 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 648 (712)
+...++ .| |+..+..++..+.+.|+|++|.+.|++. ...|+...+..+...+.+.|+.++|.+.+++.+.
T Consensus 318 e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 318 RQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555522 44 4445555566666666666666665555 4455555555555555555555555555555544
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.55 E-value=6.7e-12 Score=127.12 Aligned_cols=122 Identities=11% Similarity=0.035 Sum_probs=63.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHH---H--
Q 005136 423 ISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTY---A-- 497 (712)
Q Consensus 423 ~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~-- 497 (712)
...+...|+++.|...++.+.+.. +-+...+..+...+...|+++.+.+++..+.+.+..++......-...+ .
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 344444555555566666666653 2344455566666666666666666666666654332222111111111 1
Q ss_pred --hcCChHHHHHHhccCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005136 498 --KSGDIESSRRVFDRMPD---KNEISWTVMVRGLAESGYAKESINLFEEMEK 545 (712)
Q Consensus 498 --~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 545 (712)
.....+...+.++..++ .++..+..++..+...|+.++|.+++++..+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~ 291 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK 291 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Confidence 11223333444444442 3555666666666777777777777776666
No 46
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=6.9e-11 Score=114.00 Aligned_cols=276 Identities=13% Similarity=0.071 Sum_probs=137.5
Q ss_pred CCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHH
Q 005136 348 EKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYL 427 (712)
Q Consensus 348 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 427 (712)
..++.+...-.+-+...+++.+..++++.+.+.+|+....+..-|.++...|+..+-
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~L----------------------- 297 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKL----------------------- 297 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchH-----------------------
Confidence 445566666677777788888888888888888887777777777777777766665
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHH
Q 005136 428 EHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRR 507 (712)
Q Consensus 428 ~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 507 (712)
..+=.++.+. .+-...+|-++..-|...|+.++|+.++.+..... +.=...|-.....|.-.|.-++|..
T Consensus 298 --------f~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAma 367 (611)
T KOG1173|consen 298 --------FLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMA 367 (611)
T ss_pred --------HHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHH
Confidence 3343444433 12233344444433333344444444444433221 1112234444455555555555555
Q ss_pred HhccCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHhcchh--
Q 005136 508 VFDRMPD---KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNEL-TILSVLFACSHSGLVDKGLKYFNSMEPI-- 581 (712)
Q Consensus 508 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~-- 581 (712)
.+....+ .....+--+..-|.+.++.+.|.+.|.+... +.|+.+ .++-+.-.....+.+.+|..+|+.....
T Consensus 368 aY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik 445 (611)
T KOG1173|consen 368 AYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIK 445 (611)
T ss_pred HHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhh
Confidence 4443321 1111111223344555555555555555544 444332 2333333334445555555555544310
Q ss_pred --cCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCch
Q 005136 582 --YNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM--PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAG 656 (712)
Q Consensus 582 --~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 656 (712)
..-.+ ..++++.|+.+|.+.+++++|+..+++. ....+..++.++...|...|+++.|+..+.+++.+.|++..+
T Consensus 446 ~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~ 525 (611)
T KOG1173|consen 446 SVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFI 525 (611)
T ss_pred hccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHH
Confidence 00011 3344555555555555555555555554 122334445555555555555555555555555555554433
Q ss_pred HH
Q 005136 657 YV 658 (712)
Q Consensus 657 ~~ 658 (712)
-.
T Consensus 526 ~~ 527 (611)
T KOG1173|consen 526 SE 527 (611)
T ss_pred HH
Confidence 33
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.54 E-value=6.9e-12 Score=126.22 Aligned_cols=281 Identities=11% Similarity=0.069 Sum_probs=175.6
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHH--HHHHHHHHhcCChHHHH
Q 005136 294 SGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFIS--NALIDLYSKCGETKDGR 371 (712)
Q Consensus 294 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~ 371 (712)
.|++++|.+.+.......-.| ...|.....+..+.|+++.+.+.+..+.+.. |+.... ......+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHH
Confidence 466666666655543321111 1223233333356667777777776666542 333222 23355677777777777
Q ss_pred HHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 005136 372 LVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNK 451 (712)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~ 451 (712)
..++++.+..|.++.....+...|.+.|++++| ..++..+.+.+..++.
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a-------------------------------~~~l~~l~k~~~~~~~ 222 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSL-------------------------------LDILPSMAKAHVGDEE 222 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHH-------------------------------HHHHHHHHHcCCCCHH
Confidence 777777777766666666666666666666666 6666666555433221
Q ss_pred -------HHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHH
Q 005136 452 -------STFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMV 524 (712)
Q Consensus 452 -------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~ 524 (712)
..|..++.......+.+...++++.+-+. .+.++.....+...+...|+.++|..++++..+.....--.++
T Consensus 223 ~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l 301 (398)
T PRK10747 223 HRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLL 301 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHH
Confidence 12222233223333444444555444322 2456677777788888888888888888776643322222334
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCC
Q 005136 525 RGLAESGYAKESINLFEEMEKTSITPNE-LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGR 603 (712)
Q Consensus 525 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 603 (712)
.+....++.+++++..++..+ ..|+. ..+..+...|.+.+++++|.+.|+.+. ...|+...+..++.++.+.|+
T Consensus 302 ~~~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al---~~~P~~~~~~~La~~~~~~g~ 376 (398)
T PRK10747 302 IPRLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAAL---KQRPDAYDYAWLADALDRLHK 376 (398)
T ss_pred HhhccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHcCC
Confidence 444566888888888888887 35654 456677888888899999999998887 447888888888888889999
Q ss_pred hHHHHHHHHhC
Q 005136 604 LSEAEDFINSM 614 (712)
Q Consensus 604 ~~~A~~~~~~~ 614 (712)
.++|.+++++.
T Consensus 377 ~~~A~~~~~~~ 387 (398)
T PRK10747 377 PEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHH
Confidence 99988888764
No 48
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.51 E-value=1.1e-08 Score=100.55 Aligned_cols=141 Identities=12% Similarity=0.168 Sum_probs=84.0
Q ss_pred chHHHHHHHHHHHHcCCCCchhh--HHHHHHHHHhcCChHHHHHHhccCCCC-----CcchHHHHHHHHHHcCChHHHHH
Q 005136 466 SLEKGKDLHGKIIKLGFPYDVFL--GTALTDTYAKSGDIESSRRVFDRMPDK-----NEISWTVMVRGLAESGYAKESIN 538 (712)
Q Consensus 466 ~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~ 538 (712)
+++.|..+|++..+ +.+|...- |-.....-.+.|-...|+.++++.... -...||..|.--...=.+.....
T Consensus 565 klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~ 643 (835)
T KOG2047|consen 565 KLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTRE 643 (835)
T ss_pred CHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHH
Confidence 55666666666666 44433221 111111222346667777777776532 22357776665555445666778
Q ss_pred HHHHHHHcCCCCCHHHHHH---HHHHhcccCcHHHHHHHHHhcchhcCCCC--chHHHHHHHHHhhhcCChHHHHHHH
Q 005136 539 LFEEMEKTSITPNELTILS---VLFACSHSGLVDKGLKYFNSMEPIYNIKP--NGRHYTCVVDMLSRSGRLSEAEDFI 611 (712)
Q Consensus 539 ~~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~ 611 (712)
+|++.++ .-|+...-.. ....=.+.|..+.|..++....+ -++| +...|...-..-++.|+-+-..+++
T Consensus 644 iYekaIe--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq--~~dPr~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 644 IYEKAIE--SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ--ICDPRVTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred HHHHHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh--cCCCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 8888888 4666644332 23344578999999999877652 3345 6777888777778888854444444
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=1.6e-12 Score=127.89 Aligned_cols=247 Identities=11% Similarity=0.095 Sum_probs=193.5
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcC--CCCchhhHHHHHHHHHhcCChHHHHHH
Q 005136 431 QFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLG--FPYDVFLGTALTDTYAKSGDIESSRRV 508 (712)
Q Consensus 431 ~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 508 (712)
+..+|+..|..+... +.-.......+..+|...+++++++.+|+.+.+.. .--+..+|.+.+.-+-+.-....--+-
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 456778888884443 33334566677778888888888888888887642 123556666666544332222222222
Q ss_pred hccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-
Q 005136 509 FDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP- 586 (712)
Q Consensus 509 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p- 586 (712)
+-...+..+.+|-++.+.|.-+++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+... ++.|
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~~~~r 487 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---GVDPR 487 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh---cCCch
Confidence 2233345788999999999999999999999999999 778 56788888888888999999999999988 5555
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHH-HHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPDSNAWA-SLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIY 664 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 664 (712)
+-..|.-++-.|.+.++++.|.-.|+++ .+.|....+. .+...+.+.|+.++|.++++++..++|.|+-.-+.-+.++
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il 567 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASIL 567 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHH
Confidence 4456667889999999999999999998 7788755544 4445588999999999999999999999999999999999
Q ss_pred HhcCCchhHHHHHHHHHhC
Q 005136 665 ASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 665 ~~~g~~~eA~~~~~~~~~~ 683 (712)
...++++||+..++++++.
T Consensus 568 ~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 568 FSLGRYVEALQELEELKEL 586 (638)
T ss_pred HhhcchHHHHHHHHHHHHh
Confidence 9999999999999999874
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.50 E-value=7.9e-11 Score=109.04 Aligned_cols=290 Identities=12% Similarity=0.112 Sum_probs=208.8
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHH
Q 005136 294 SGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLV 373 (712)
Q Consensus 294 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 373 (712)
.|++.+|.++..+-.+.+-.| ...|.....+....|+.+.+-.++.++.+..-.++..+.-+..+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 578888888888776655333 3456666667777888888888888887765556677777777888888888888888
Q ss_pred HHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 005136 374 FDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKST 453 (712)
Q Consensus 374 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~ 453 (712)
.+++.+..+.++.......++|.+.|++... ..++..+.+.|.-.++..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~l-------------------------------l~~l~~L~ka~~l~~~e~ 224 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQAL-------------------------------LAILPKLRKAGLLSDEEA 224 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHH-------------------------------HHHHHHHHHccCCChHHH
Confidence 8888777766666677777777666666666 888888887775544321
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHc
Q 005136 454 FSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAES 530 (712)
Q Consensus 454 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 530 (712)
-.. ...++..+++-....+..+.-...++..+ +.++..-.+++.-+.+.
T Consensus 225 ~~l----------------------------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l 276 (400)
T COG3071 225 ARL----------------------------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRL 276 (400)
T ss_pred HHH----------------------------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHc
Confidence 110 11123333333334444445555666665 34666777788888899
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHH
Q 005136 531 GYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDF 610 (712)
Q Consensus 531 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 610 (712)
|+.++|.++.++..+.+..|+ ....-.+.+-++...-++..+......+- ++..+.+|+..|.+.+.|.+|.+.
T Consensus 277 ~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~ 350 (400)
T COG3071 277 GDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASEA 350 (400)
T ss_pred CChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999999888777776 22233466777887777777777644233 457888999999999999999999
Q ss_pred HHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhcc
Q 005136 611 INSM-PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKL 649 (712)
Q Consensus 611 ~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 649 (712)
|+.. +..|+..++..+..++.+.|+.++|.+..++++-+
T Consensus 351 leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 351 LEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9976 77899999999999999999999999999988743
No 51
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=7.7e-10 Score=100.35 Aligned_cols=448 Identities=13% Similarity=0.101 Sum_probs=219.1
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHH
Q 005136 159 FVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLA 238 (712)
Q Consensus 159 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 238 (712)
+..+.++..|+.+++--...+-.-...+-..+..++.+.|++++|...+..+.+.. .++....-.|..++.-.|.+.+|
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHH
Confidence 44456666666666554432222122233334455566777777777777666543 44455555555555666777777
Q ss_pred HHHHhhcCCCCcchH-HHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 005136 239 RSVFDRMEKRDVVSW-TVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTS 317 (712)
Q Consensus 239 ~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 317 (712)
..+-.+..+ .... ..+.....+.++-++-..+-+.+.... .---+|.......-.+++|+++|+..... .|+-.
T Consensus 111 ~~~~~ka~k--~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~ 185 (557)
T KOG3785|consen 111 KSIAEKAPK--TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYI 185 (557)
T ss_pred HHHHhhCCC--ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Chhhh
Confidence 776654432 2222 233333445555554444444443211 22233444444455678888888887662 35555
Q ss_pred HHHHHHHHH-hccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHh
Q 005136 318 CFSIVLSAL-ASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYG 396 (712)
Q Consensus 318 ~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 396 (712)
..+..+..| .+..-++-+.+++.-.++.- +.++...|..+....+.=+-..|+.-.+.+.+... ..| ..+.-++
T Consensus 186 alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~---~~~-~f~~~l~ 260 (557)
T KOG3785|consen 186 ALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNID---QEY-PFIEYLC 260 (557)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccc---ccc-hhHHHHH
Confidence 555544443 45566666666666665542 22333333333333322222222222233222220 001 0111111
Q ss_pred cc-----CChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHH
Q 005136 397 LN-----GQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGK 471 (712)
Q Consensus 397 ~~-----~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 471 (712)
+. ..-+.|++++-.+.+.=+..--.|+-.|.+.+++.+|..+.+++.- ..|-......+.. +
T Consensus 261 rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~--a--------- 327 (557)
T KOG3785|consen 261 RHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVF--A--------- 327 (557)
T ss_pred HcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHH--H---------
Confidence 11 1223443333333322222223333334444444444444443311 1111111111111 0
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC-----CCcchHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005136 472 DLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPD-----KNEISWTVMVRGLAESGYAKESINLFEEMEKT 546 (712)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 546 (712)
.+..-........-|.+.|+-.-. .......++...+.-..++++++..+.....-
T Consensus 328 -------------------alGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY 388 (557)
T KOG3785|consen 328 -------------------ALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY 388 (557)
T ss_pred -------------------HhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111223444454443322 22334555666666666777777777666653
Q ss_pred CCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHH-HHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHH
Q 005136 547 SITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHY-TCVVDMLSRSGRLSEAEDFINSMPFEPDSNAWAS 625 (712)
Q Consensus 547 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 625 (712)
+..|...-..+..+.+..|++.+|.++|-.+. ...++ |..+| ..|+++|.++++++-|++++-++.-..+...+..
T Consensus 389 -F~NdD~Fn~N~AQAk~atgny~eaEelf~~is-~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLq 465 (557)
T KOG3785|consen 389 -FTNDDDFNLNLAQAKLATGNYVEAEELFIRIS-GPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQ 465 (557)
T ss_pred -hcCcchhhhHHHHHHHHhcChHHHHHHHhhhc-Chhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHH
Confidence 33333333456677777788888888887776 11222 33344 4567788888888888888877754444444444
Q ss_pred HHH-HHhhcCCHHHHHHHHHHHhccCCC
Q 005136 626 LLS-GCKTYKNEQIAERAVKNLWKLAEE 652 (712)
Q Consensus 626 l~~-~~~~~g~~~~a~~~~~~~~~~~p~ 652 (712)
++. .|...+.+--|.+.+..+-.++|.
T Consensus 466 lIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 466 LIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 443 377788777777777777666665
No 52
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.50 E-value=1.2e-09 Score=108.32 Aligned_cols=474 Identities=12% Similarity=0.107 Sum_probs=264.7
Q ss_pred HHHHHHhcCCChhHhHHHHhhc--CCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhH-H----------------
Q 005136 61 RLLIMYLGSRKSLEANEIVKDL--NGFDLVVHNCMINANIQWGNLEEAQRLFDGMPERNEVS-W---------------- 121 (712)
Q Consensus 61 ~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~---------------- 121 (712)
+-|+.|.+.|++..|..+...- .-.|......+..++.+..-+++|-++|+++..++... +
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarf 699 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARF 699 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHh
Confidence 4678888888888776554332 22455555556666666666667777776665543211 0
Q ss_pred ----------HHHHHHHHccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHH
Q 005136 122 ----------TALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSIC 191 (712)
Q Consensus 122 ----------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 191 (712)
..-..-+...|+++.|...|-+. ...-..+.+......|.+|+.+++.+..... -...|..+.
T Consensus 700 afp~evv~lee~wg~hl~~~~q~daainhfiea-----~~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~ia 772 (1636)
T KOG3616|consen 700 AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA-----NCLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIA 772 (1636)
T ss_pred hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh-----hhHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHH
Confidence 00111112223333333332221 1122334455667889999999988876532 344677888
Q ss_pred HHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCCCC--cchHHHHHHHHHhcCCHHHH
Q 005136 192 KACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRD--VVSWTVILDVFIEMGDLGEA 269 (712)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a 269 (712)
..|+..|+++.|.++|-+. ..++..|.+|.+.|+++.|.++-++...|. ...|.+-..-+-+.|++.+|
T Consensus 773 dhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~ea 843 (1636)
T KOG3616|consen 773 DHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEA 843 (1636)
T ss_pred HHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhh
Confidence 9999999999999988643 356778899999999999999998887764 34566666777889999999
Q ss_pred HHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCC
Q 005136 270 RRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEK 349 (712)
Q Consensus 270 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 349 (712)
++++-.+..|+. .|..|-+.|..++.+++..+-.. ..-..|...+..-+...|++..|..-|-+..+
T Consensus 844 eqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea~d----- 910 (1636)
T KOG3616|consen 844 EQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----- 910 (1636)
T ss_pred hheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhCh---hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh-----
Confidence 999988888864 57788889999988888765422 11224555666677778888888776654432
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhc
Q 005136 350 DVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEH 429 (712)
Q Consensus 350 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 429 (712)
|.+-+++|-.++-+++|.++-+.--..+ .-..++-.+++.---+.|.+++.+.. ....-++..+..
T Consensus 911 ----~kaavnmyk~s~lw~dayriaktegg~n-----~~k~v~flwaksiggdaavkllnk~g-----ll~~~id~a~d~ 976 (1636)
T KOG3616|consen 911 ----FKAAVNMYKASELWEDAYRIAKTEGGAN-----AEKHVAFLWAKSIGGDAAVKLLNKHG-----LLEAAIDFAADN 976 (1636)
T ss_pred ----HHHHHHHhhhhhhHHHHHHHHhcccccc-----HHHHHHHHHHHhhCcHHHHHHHHhhh-----hHHHHhhhhhcc
Confidence 5566777888888888777654322111 11111122222222234433333221 111223334445
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchh----hHHHHHHHHHhcC-ChHH
Q 005136 430 KQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVF----LGTALTDTYAKSG-DIES 504 (712)
Q Consensus 430 ~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g-~~~~ 504 (712)
+-++-|..+-+-..+.. .|.... .+..-+...|+++.|.+.+-+.++.+.- ++. +-...---+.+.| ++++
T Consensus 977 ~afd~afdlari~~k~k-~~~vhl--k~a~~ledegk~edaskhyveaiklnty-nitwcqavpsrfd~e~ir~gnkpe~ 1052 (1636)
T KOG3616|consen 977 CAFDFAFDLARIAAKDK-MGEVHL--KLAMFLEDEGKFEDASKHYVEAIKLNTY-NITWCQAVPSRFDAEFIRAGNKPEE 1052 (1636)
T ss_pred cchhhHHHHHHHhhhcc-Cccchh--HHhhhhhhccchhhhhHhhHHHhhcccc-cchhhhcccchhhHHHHHcCCChHH
Confidence 55555555444333322 122111 1111233455555555555444443200 000 0000000112222 2222
Q ss_pred HHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHhcccCcHHHHHHHHHhcchhc
Q 005136 505 SRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNE--LTILSVLFACSHSGLVDKGLKYFNSMEPIY 582 (712)
Q Consensus 505 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 582 (712)
|. ..+...++|..|.++-+. ..|+. ..+..-.+.....|++.+|..++-+..
T Consensus 1053 av------------------~mfi~dndwa~aervae~-----h~~~~l~dv~tgqar~aiee~d~~kae~fllran--- 1106 (1636)
T KOG3616|consen 1053 AV------------------EMFIHDNDWAAAERVAEA-----HCEDLLADVLTGQARGAIEEGDFLKAEGFLLRAN--- 1106 (1636)
T ss_pred HH------------------HHhhhcccHHHHHHHHHh-----hChhhhHHHHhhhhhccccccchhhhhhheeecC---
Confidence 22 234555566666555443 22332 234444445556677777777765554
Q ss_pred CCCCchHHHHHHHHHhhhcCChHHHHHHHHhC
Q 005136 583 NIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM 614 (712)
Q Consensus 583 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 614 (712)
+|+. ..+.|...+.|.+|+++.+..
T Consensus 1107 --kp~i-----~l~yf~e~~lw~dalri~kdy 1131 (1636)
T KOG3616|consen 1107 --KPDI-----ALNYFIEAELWPDALRIAKDY 1131 (1636)
T ss_pred --CCch-----HHHHHHHhccChHHHHHHHhh
Confidence 5653 245566777777777776665
No 53
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.50 E-value=2.5e-08 Score=98.06 Aligned_cols=324 Identities=12% Similarity=0.113 Sum_probs=184.2
Q ss_pred ccCChhhHHHHHHHHHHcCCCC------cHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCc----eeeHHHHHHHHhc
Q 005136 328 SLKALRSGMHVHAHVLKIGIEK------DVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAH----VVSWNSMIGGYGL 397 (712)
Q Consensus 328 ~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~ 397 (712)
..|+..+....+.++.+. +.| -...|..+.+.|-..|+++.|+.+|++..+-..+. ..+|..-...-.+
T Consensus 359 ~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElr 437 (835)
T KOG2047|consen 359 YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELR 437 (835)
T ss_pred hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHh
Confidence 346677777777777764 112 23567888999999999999999999988766442 2355555566667
Q ss_pred cCChhhHHHHhhcCCC-CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHH
Q 005136 398 NGQMEEAKELFDNMPK-RNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGK 476 (712)
Q Consensus 398 ~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 476 (712)
..+++.|.++++.... |.... ..+...+.+-+ .. +.-+...+...++.-...|-++....+++.
T Consensus 438 h~~~~~Al~lm~~A~~vP~~~~-----~~~yd~~~pvQ-~r---------lhrSlkiWs~y~DleEs~gtfestk~vYdr 502 (835)
T KOG2047|consen 438 HENFEAALKLMRRATHVPTNPE-----LEYYDNSEPVQ-AR---------LHRSLKIWSMYADLEESLGTFESTKAVYDR 502 (835)
T ss_pred hhhHHHHHHHHHhhhcCCCchh-----hhhhcCCCcHH-HH---------HHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 7778888777766542 21111 11111111100 00 111223344445555556677777888888
Q ss_pred HHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC----CCc-chHHHHHHHHHH---cCChHHHHHHHHHHHHcCC
Q 005136 477 IIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPD----KNE-ISWTVMVRGLAE---SGYAKESINLFEEMEKTSI 548 (712)
Q Consensus 477 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~ 548 (712)
+++..+... .+.....-.+....-++++.+++++-.. |++ ..|+..+.-+.+ ....+.|..+|++.++ |.
T Consensus 503 iidLriaTP-qii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~C 580 (835)
T KOG2047|consen 503 IIDLRIATP-QIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GC 580 (835)
T ss_pred HHHHhcCCH-HHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cC
Confidence 877654333 2222233334556668888888887653 333 257776655543 2367888889988888 55
Q ss_pred CCCHHHHHHHH--HHhcccCcHHHHHHHHHhcchhcCCCC--chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHH
Q 005136 549 TPNELTILSVL--FACSHSGLVDKGLKYFNSMEPIYNIKP--NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPDSNAW 623 (712)
Q Consensus 549 ~p~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~ 623 (712)
+|...-+.-|+ ..=..-|....|..+++++.. ++++ -...|+..+.--...=-...-..++++. ..-|+...-
T Consensus 581 pp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r 658 (835)
T KOG2047|consen 581 PPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAR 658 (835)
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHH
Confidence 55543222222 222345788888888888762 4444 2344554443221111111223333333 223443322
Q ss_pred ---HHHHHHHhhcCCHHHHHHHHHHHhccC-CC-CCchHHHHHHHHHhcCCch
Q 005136 624 ---ASLLSGCKTYKNEQIAERAVKNLWKLA-EE-HPAGYVLLSNIYASAGRWI 671 (712)
Q Consensus 624 ---~~l~~~~~~~g~~~~a~~~~~~~~~~~-p~-~~~~~~~l~~~~~~~g~~~ 671 (712)
..+...-.+.|..+.|..++.-.-+.- |. ++.++.+.-.--.+-|+-+
T Consensus 659 ~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 659 EMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence 223333456788888888887777763 43 4667777777777777733
No 54
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.49 E-value=2e-11 Score=123.62 Aligned_cols=288 Identities=13% Similarity=0.040 Sum_probs=154.5
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHH
Q 005136 293 QSGYPEEAFRLFRQMTRYSFKPNT-SCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGR 371 (712)
Q Consensus 293 ~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 371 (712)
..|+++.|.+.+.+..+. .|+. ..+.....+....|+.+.+.+.+....+....+...+.......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 456777777777665442 3432 2233334455566777777777766655432222233334466666777777777
Q ss_pred HHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 005136 372 LVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNK 451 (712)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~ 451 (712)
..++.+.+..|.+..++..+...+...|++++| .+.+..+.+.++.+..
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a-------------------------------~~~l~~l~k~~~~~~~ 222 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQAL-------------------------------DDIIDNMAKAGLFDDE 222 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHH-------------------------------HHHHHHHHHcCCCCHH
Confidence 777777776665666666666666666666666 7777777766543222
Q ss_pred HHHHHHHHHH---hccCchHHHHHHHHHHHHcC---CCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCcchHH---H
Q 005136 452 STFSSVLCAS---ASVASLEKGKDLHGKIIKLG---FPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWT---V 522 (712)
Q Consensus 452 ~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~ 522 (712)
.....-..+. ...+..+.+.+.+..+.+.. .+.++..+..+...+...|+.++|.+++++..+..+.... .
T Consensus 223 ~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~ 302 (409)
T TIGR00540 223 EFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP 302 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH
Confidence 2111111111 22222233333444444332 1247778888888899999999999998887743222110 0
Q ss_pred HHH--HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhh
Q 005136 523 MVR--GLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSR 600 (712)
Q Consensus 523 l~~--~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 600 (712)
++. .....++.+.+++.+++..+ ..|+.. +.....+++..+.+
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk--~~p~~~---------------------------------~~~ll~sLg~l~~~ 347 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAK--NVDDKP---------------------------------KCCINRALGQLLMK 347 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHH--hCCCCh---------------------------------hHHHHHHHHHHHHH
Confidence 111 11122333444444433333 122221 11444556666666
Q ss_pred cCChHHHHHHHHh--C-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 005136 601 SGRLSEAEDFINS--M-PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWK 648 (712)
Q Consensus 601 ~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 648 (712)
.|++++|.+.|++ . ...|+...+..+...+.+.|+.++|.+++++++.
T Consensus 348 ~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 348 HGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred cccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666662 2 3455555555555556666666666666666543
No 55
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.49 E-value=4.4e-10 Score=112.64 Aligned_cols=491 Identities=14% Similarity=0.128 Sum_probs=289.6
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHh---cccchHHHHHHHHHHHHhCCCCCccHHHHHHH-----HHHcc
Q 005136 161 QNGFSFEALKLFLKLLESGVKPNEVTFSSICKACA---EINDFRLGLSVFGLIFKAGFEKHVSVCNSLIT-----LSLKM 232 (712)
Q Consensus 161 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~-----~~~~~ 232 (712)
..++...++.-+.....++...+..++..+...+. ..++.+.+ .+-.++.....|...++...+. -..+.
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm~~~~k~r~ 316 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSLMLLLRKLRL 316 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHHHHHHHHHHH
Confidence 35666777777777666666666666555544332 34445544 3333333333333222222211 11111
Q ss_pred CChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCC---CCceeHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005136 233 GEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPE---RNEVSWSVMIARYNQSGYPEEAFRLFRQMTR 309 (712)
Q Consensus 233 ~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 309 (712)
+.+. .|...|..+.-++...|+++.+.+.|++... .....|..+...+...|.-..|+.+++.-..
T Consensus 317 ~~~q-----------nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~ 385 (799)
T KOG4162|consen 317 KKFQ-----------NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLK 385 (799)
T ss_pred hhhc-----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcc
Confidence 2221 3445555677777788888888888877664 3445677888888888888888888887654
Q ss_pred CCCCC-CHHHHHHHHHHHh-ccCChhhHHHHHHHHHHc--CC--CCcHHHHHHHHHHHHhc-----------CChHHHHH
Q 005136 310 YSFKP-NTSCFSIVLSALA-SLKALRSGMHVHAHVLKI--GI--EKDVFISNALIDLYSKC-----------GETKDGRL 372 (712)
Q Consensus 310 ~~~~p-~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------g~~~~A~~ 372 (712)
..-.| +...+...-..|. +.+..++++++...+.+. +. ...+..|..+.-+|... ....++.+
T Consensus 386 ~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslq 465 (799)
T KOG4162|consen 386 KSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQ 465 (799)
T ss_pred cccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHH
Confidence 33224 3334444444444 456777777777776662 11 12334444444444332 12345667
Q ss_pred HHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCC----CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 005136 373 VFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMP----KRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEI 448 (712)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~ 448 (712)
.+++..+.++.|+.+...+.--|+..++.+.|.+...+.. ..+...|..+.-.+...+++.+|+.+.+.....- .
T Consensus 466 ale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~ 544 (799)
T KOG4162|consen 466 ALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-G 544 (799)
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-h
Confidence 7777777777666665556666677777777766665544 2355667777777777777777777777655431 1
Q ss_pred CCHHHHHHHHHHHhccCchHHHHHHHHHHHHc-CCCCchhhHHHHHHHHHhcCChHHHHHHhccCC-----CCC-cchHH
Q 005136 449 PNKSTFSSVLCASASVASLEKGKDLHGKIIKL-GFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP-----DKN-EISWT 521 (712)
Q Consensus 449 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~-~~~~~ 521 (712)
-|......-+..-...++.+++......+... .-.+. ....++-....+....+. ..+ ..++.
T Consensus 545 ~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~----------~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr 614 (799)
T KOG4162|consen 545 DNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYG----------VQQTLDEGKLLRLKAGLHLALSQPTDAISTSR 614 (799)
T ss_pred hhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhh----------HhhhhhhhhhhhhhcccccCcccccccchhhH
Confidence 12222222222233355666666555554431 00000 001111122222222221 111 11222
Q ss_pred HHHHHHHHcC---ChHHHHHHHHHHHHcCCCC--CH------HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chH
Q 005136 522 VMVRGLAESG---YAKESINLFEEMEKTSITP--NE------LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGR 589 (712)
Q Consensus 522 ~l~~~~~~~~---~~~~A~~~~~~~~~~~~~p--~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~ 589 (712)
.+..-....+ ..+.. +......| +. ..|......+.+.+..++|...+.+.. ++.| ...
T Consensus 615 ~ls~l~a~~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~ 685 (799)
T KOG4162|consen 615 YLSSLVASQLKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSAS 685 (799)
T ss_pred HHHHHHHhhhhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHH
Confidence 2222111111 11111 11111222 21 234455667788899999998888876 4456 777
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHH--HHHHHhccCCCCCchHHHHHHHHH
Q 005136 590 HYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAER--AVKNLWKLAEEHPAGYVLLSNIYA 665 (712)
Q Consensus 590 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~ 665 (712)
.|...+..+...|++++|.+.|... ...|+ .....++...+.+.|+...|+. ++..+++++|.++++|+.||.++.
T Consensus 686 ~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k 765 (799)
T KOG4162|consen 686 VYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFK 765 (799)
T ss_pred HHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 8888899999999999999998876 66776 5667788888999999888888 999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHhCC
Q 005136 666 SAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 666 ~~g~~~eA~~~~~~~~~~~ 684 (712)
+.|+.++|.+.|+...+-.
T Consensus 766 ~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 766 KLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HccchHHHHHHHHHHHhhc
Confidence 9999999999999887643
No 56
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=6.8e-11 Score=111.83 Aligned_cols=215 Identities=13% Similarity=0.181 Sum_probs=117.6
Q ss_pred HHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCC---CCcccHHHHHHHHHhcCChhHHHH
Q 005136 361 YSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPK---RNDVSWSAIISGYLEHKQFDLVFA 437 (712)
Q Consensus 361 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 437 (712)
+.-.|+.-.|..-|+.....++.+...|..+...|....+.++.+..|....+ .++.+|..-...+.-.+++++|..
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 44467777777777777777765555577777777777777777666665542 245566666666666666666677
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCc
Q 005136 438 VFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNE 517 (712)
Q Consensus 438 ~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 517 (712)
=|++.+... +.+...|..+..+..+.+.++++...|++.++. ++..+
T Consensus 416 DF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~------------------------------- 462 (606)
T KOG0547|consen 416 DFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCP------------------------------- 462 (606)
T ss_pred HHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCc-------------------------------
Confidence 777666532 122333433333333444444444444443332 23333
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-------HHHHH--HHHHHhcccCcHHHHHHHHHhcchhcCCCC-c
Q 005136 518 ISWTVMVRGLAESGYAKESINLFEEMEKTSITPN-------ELTIL--SVLFACSHSGLVDKGLKYFNSMEPIYNIKP-N 587 (712)
Q Consensus 518 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-------~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~ 587 (712)
..|+.....+...++++.|++.|+..++ +.|. ...+. .++-.- =.+++..|++++.+.. .++| .
T Consensus 463 Evy~~fAeiLtDqqqFd~A~k~YD~ai~--LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~---e~Dpkc 536 (606)
T KOG0547|consen 463 EVYNLFAEILTDQQQFDKAVKQYDKAIE--LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAI---ELDPKC 536 (606)
T ss_pred hHHHHHHHHHhhHHhHHHHHHHHHHHHh--hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHH---ccCchH
Confidence 3444445555555555555555555544 2222 11110 111111 1256666666666665 4455 4
Q ss_pred hHHHHHHHHHhhhcCChHHHHHHHHhC
Q 005136 588 GRHYTCVVDMLSRSGRLSEAEDFINSM 614 (712)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 614 (712)
...+..|+...++.|+.++|+++|++.
T Consensus 537 e~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 537 EQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455666666666667777777666664
No 57
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.48 E-value=7.9e-14 Score=134.10 Aligned_cols=250 Identities=16% Similarity=0.242 Sum_probs=86.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhH-HHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCC
Q 005136 156 ICGFVQNGFSFEALKLFLKLLESGVKPNEVTF-SSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGE 234 (712)
Q Consensus 156 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 234 (712)
...+.+.|++++|++++++......+|+...| ..+...+...++.+.|...++.+...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 44455555666666655443332212222222 22333444455566666666655554422 44445555544 45555
Q ss_pred hHHHHHHHhhcCC--CCcchHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCceeHHHHHHHHHhcCChhHHHHHHHHH
Q 005136 235 VDLARSVFDRMEK--RDVVSWTVILDVFIEMGDLGEARRIFDEMP-----ERNEVSWSVMIARYNQSGYPEEAFRLFRQM 307 (712)
Q Consensus 235 ~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 307 (712)
+++|.+++++.-+ ++...+..++..+...++++++..+++.+. ..+...|..+...+.+.|+.++|++.+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666555554322 333344444444555555555555554432 235556666677777777777777777777
Q ss_pred HhCCCCCC-HHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCcee
Q 005136 308 TRYSFKPN-TSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVV 386 (712)
Q Consensus 308 ~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 386 (712)
.+ ..|+ ......++..+...|+.+++.+++....+.. +.++..+..+..+|...|+.++|...|++.....+.|+.
T Consensus 173 l~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 173 LE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 66 3453 5556667777777777777777776666653 445566667777777777777777777777776766777
Q ss_pred eHHHHHHHHhccCChhhHHHHhhc
Q 005136 387 SWNSMIGGYGLNGQMEEAKELFDN 410 (712)
Q Consensus 387 ~~~~l~~~~~~~~~~~~a~~~~~~ 410 (712)
....+..++...|+.++|.++..+
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHHT--------------
T ss_pred cccccccccccccccccccccccc
Confidence 777777777777777777555543
No 58
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=3.9e-10 Score=108.96 Aligned_cols=266 Identities=14% Similarity=0.164 Sum_probs=138.4
Q ss_pred HHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhH
Q 005136 325 ALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEA 404 (712)
Q Consensus 325 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 404 (712)
-|....++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++.+..|....+|-++.--|...|...+|
T Consensus 253 ~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seA 331 (611)
T KOG1173|consen 253 RLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEA 331 (611)
T ss_pred HHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHH
Confidence 3334444555555554444431 223333333333444555555444444555555544455555555555555555555
Q ss_pred HHHhhcCCCCC---cccHHHHHHHHHhcCChhHHHHHHHHHHHC--CC-CCCHHHHHHHHHHHhccCchHHHHHHHHHHH
Q 005136 405 KELFDNMPKRN---DVSWSAIISGYLEHKQFDLVFAVFNEMLLS--GE-IPNKSTFSSVLCASASVASLEKGKDLHGKII 478 (712)
Q Consensus 405 ~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 478 (712)
.+.|.+...-| ...|-.++..|.-.|..+.|+..|....+. |. .|. .| +.--|.+.++...|.++|.+..
T Consensus 332 Rry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~--LY--lgmey~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 332 RRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS--LY--LGMEYMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred HHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH--HH--HHHHHHHhccHHHHHHHHHHHH
Confidence 55554433222 224555555555555555556666655432 11 121 11 1222444455555555554444
Q ss_pred HcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHc----C--CCCCH
Q 005136 479 KLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKT----S--ITPNE 552 (712)
Q Consensus 479 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~--~~p~~ 552 (712)
... |. |+...+-+.......+.+.+|..+|+..... + ...-.
T Consensus 408 ai~-P~-------------------------------Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~ 455 (611)
T KOG1173|consen 408 AIA-PS-------------------------------DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWE 455 (611)
T ss_pred hcC-CC-------------------------------cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchh
Confidence 331 33 3344444444444444555555555444311 0 11133
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 005136 553 LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPDSNAWASLLSGC 630 (712)
Q Consensus 553 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~ 630 (712)
.+++.|..+|.+.+.+++|+..++... ...| +..++..++-+|...|+++.|.+.|.+. .+.|+..+...++..+
T Consensus 456 p~~~NLGH~~Rkl~~~~eAI~~~q~aL---~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 456 PTLNNLGHAYRKLNKYEEAIDYYQKAL---LLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHH---HcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 456777777777788888888877776 2345 7777888888888888888888888776 6677776666666543
No 59
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.45 E-value=7.1e-11 Score=105.80 Aligned_cols=311 Identities=11% Similarity=0.133 Sum_probs=181.7
Q ss_pred hcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcc-------cHHHHHHHHHhcCChhHH
Q 005136 363 KCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDV-------SWSAIISGYLEHKQFDLV 435 (712)
Q Consensus 363 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a 435 (712)
-+++.++|.+.|-+|.+.++.+..+.-+|.+.|-+.|..+.|+++-+.+.+.... ....|..-|...|-+|.|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 3577888888888888877767777777888888888888888877777643222 344456667777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCC
Q 005136 436 FAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDK 515 (712)
Q Consensus 436 ~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 515 (712)
..+|..+.+.| .--......++..|-...++++|.+.-.++.+.+-.+... .+..
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~---eIAq--------------------- 181 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV---EIAQ--------------------- 181 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh---HHHH---------------------
Confidence 88777776654 2223445555666666666666666655555543222110 0011
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC--chHHHH
Q 005136 516 NEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNEL-TILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP--NGRHYT 592 (712)
Q Consensus 516 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~ 592 (712)
.|.-+...+....+.+.|...+++..+. .|+.+ .-..+.......|+++.|++.++.+.+. +| -..+..
T Consensus 182 ---fyCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ---n~~yl~evl~ 253 (389)
T COG2956 182 ---FYCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ---NPEYLSEVLE 253 (389)
T ss_pred ---HHHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh---ChHHHHHHHH
Confidence 1233444445555666666666666653 34332 2233445566667777777777766633 33 244556
Q ss_pred HHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH--hcCC
Q 005136 593 CVVDMLSRSGRLSEAEDFINSM-PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYA--SAGR 669 (712)
Q Consensus 593 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~ 669 (712)
.|..+|...|+.++...++.++ ...+.......+...-....-.+.|...+.+-+...|.-..++..+..-+. ..|.
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~ 333 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGR 333 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccc
Confidence 6667777777777777776665 334444443334333333444556666666666666663333333332222 3356
Q ss_pred chhHHHHHHHHHhCCCccCCccc--EEEECCEEEEEecC
Q 005136 670 WIDAMNVRKLMTEKGLRKSGGCS--WVEVRNQVHFFFQK 706 (712)
Q Consensus 670 ~~eA~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 706 (712)
+.+.+..++.|....+...|.+. .+.+....+-|=++
T Consensus 334 ~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~W~CP 372 (389)
T COG2956 334 AKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLYWHCP 372 (389)
T ss_pred hhhhHHHHHHHHHHHHhhcCCceecccCCcceeeeeeCC
Confidence 77888888888887666665443 45555555555443
No 60
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.44 E-value=2.7e-09 Score=109.78 Aligned_cols=375 Identities=12% Similarity=0.055 Sum_probs=229.2
Q ss_pred CceeHHHHHHHHHh----c----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcH
Q 005136 280 NEVSWSVMIARYNQ----S----GYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDV 351 (712)
Q Consensus 280 ~~~~~~~l~~~~~~----~----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 351 (712)
++.+|..++..|.+ . .+...|+..++..++ ...+...+-..+......|++.-+...+-...... +...
T Consensus 774 ~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~--L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~se-p~~~ 850 (1238)
T KOG1127|consen 774 HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVS--LCANNEGLWNALGVLSGIGNVACAQHCFIKSRFSE-PTCH 850 (1238)
T ss_pred ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHH--HhhccHHHHHHHHHhhccchhhhhhhhhhhhhhcc-ccch
Confidence 34566666655544 1 223467777777765 34455555555555566677877777665554432 3456
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCC-----C---CCcccHHHHH
Q 005136 352 FISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMP-----K---RNDVSWSAII 423 (712)
Q Consensus 352 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~---~~~~~~~~l~ 423 (712)
.+|..+.-.+.+..+++.|...|......+|.+...|-.........|+.-++..+|..-. + ++..-|....
T Consensus 851 ~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~t 930 (1238)
T KOG1127|consen 851 CQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCAT 930 (1238)
T ss_pred hheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHH
Confidence 7788888888999999999999999999998888888887777777888888877776522 1 2333344444
Q ss_pred HHHHhcCChhHHHHHHHHHHH---------CCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHc-----CCCCchhhH
Q 005136 424 SGYLEHKQFDLVFAVFNEMLL---------SGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKL-----GFPYDVFLG 489 (712)
Q Consensus 424 ~~~~~~~~~~~a~~~~~~~~~---------~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~ 489 (712)
......|+.++-+...+++.. .|.+-+...|........+.+.+..+.+...+++.. ....+...-
T Consensus 931 e~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak 1010 (1238)
T KOG1127|consen 931 EIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAK 1010 (1238)
T ss_pred HHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 455666666554444333321 134445567777777777777777777766665421 111122233
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCC-CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHhcc
Q 005136 490 TALTDTYAKSGDIESSRRVFDRMPD-KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNE----LTILSVLFACSH 564 (712)
Q Consensus 490 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~ 564 (712)
....+.++..|.++.|..-+..... -+..+...-+ +..-.|+++++.+.|+++.. +..+. .....++-+...
T Consensus 1011 ~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l-~lFfkndf~~sl~~fe~aLs--is~se~d~vvLl~kva~~~g~ 1087 (1238)
T KOG1127|consen 1011 PDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDL-TLFFKNDFFSSLEFFEQALS--ISNSESDKVVLLCKVAVCMGL 1087 (1238)
T ss_pred hhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhH-HHHHHhHHHHHHHHHHHHhh--hcccccchhhhhHHHHHHHhh
Confidence 3455566777888877766655442 1222211111 12446889999999999887 33322 234444555556
Q ss_pred cCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC---C----C-CCCHHHHHHHHHHHhhcCCH
Q 005136 565 SGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM---P----F-EPDSNAWASLLSGCKTYKNE 636 (712)
Q Consensus 565 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~----~-~p~~~~~~~l~~~~~~~g~~ 636 (712)
.+.-+.|...+-+.... -.|+..+...|...+.-..+-......++++ . + .|...+ .. ..+...|+-
T Consensus 1088 ~~~k~~A~~lLfe~~~l--s~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll-~e--~i~~~~~r~ 1162 (1238)
T KOG1127|consen 1088 ARQKNDAQFLLFEVKSL--SKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLL-KE--LIYALQGRS 1162 (1238)
T ss_pred cccchHHHHHHHHHHHh--CccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHH-HH--HHHHHhhhh
Confidence 67777787766665522 2446666666655554433333333333332 1 1 111111 11 125678999
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 005136 637 QIAERAVKNLWKLAEEHPAGYVLLSNIYA 665 (712)
Q Consensus 637 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 665 (712)
......+++..-.+|.+|..+..|-.-|.
T Consensus 1163 ~~vk~~~qr~~h~~P~~~~~WslL~vrya 1191 (1238)
T KOG1127|consen 1163 VAVKKQIQRAVHSNPGDPALWSLLSVRYA 1191 (1238)
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 99999999999999999999988875454
No 61
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=2.2e-09 Score=104.37 Aligned_cols=452 Identities=10% Similarity=0.091 Sum_probs=243.6
Q ss_pred HHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHH--HhcCCHHH
Q 005136 191 CKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVF--IEMGDLGE 268 (712)
Q Consensus 191 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~ 268 (712)
++.+...|++++|.+..+.++..+ +.+...+..-+-++.+.+.+++|..+.+.-........-.+=.+| .+.+..++
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHH
Confidence 344556666777777777766665 445555555556666777777777555533321111111123333 36777888
Q ss_pred HHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCChhhHHHHHHHHHHcCC
Q 005136 269 ARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPN-TSCFSIVLSALASLKALRSGMHVHAHVLKIGI 347 (712)
Q Consensus 269 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 347 (712)
|...++.....+..+...-...+.+.|++++|+++|+.+.+++.+-- ...-..++.+-.. ... ..+.....
T Consensus 98 alk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~-------l~~-~~~q~v~~ 169 (652)
T KOG2376|consen 98 ALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA-------LQV-QLLQSVPE 169 (652)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-------hhH-HHHHhccC
Confidence 88877755544544555566778888889999999988877654321 1111222211110 000 01122222
Q ss_pred CCc--HHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHH
Q 005136 348 EKD--VFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISG 425 (712)
Q Consensus 348 ~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 425 (712)
.|+ -..+......+...|++.+|++++......+.. .+. .++.. -.++-.++ ...-..+...
T Consensus 170 v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e----------~l~-~~d~~-eEeie~el----~~IrvQlayV 233 (652)
T KOG2376|consen 170 VPEDSYELLYNTACILIENGKYNQAIELLEKALRICRE----------KLE-DEDTN-EEEIEEEL----NPIRVQLAYV 233 (652)
T ss_pred CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH----------hhc-ccccc-hhhHHHHH----HHHHHHHHHH
Confidence 221 122222344566778888888888776322200 000 00000 00000000 0011223344
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH---HHHHhccCchHH--HH------------HHHHHHHHcCCCCchhh
Q 005136 426 YLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSV---LCASASVASLEK--GK------------DLHGKIIKLGFPYDVFL 488 (712)
Q Consensus 426 ~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l---l~~~~~~~~~~~--a~------------~~~~~~~~~~~~~~~~~ 488 (712)
+-..|+..+|.++|...+... ++|....... +-+.....++.. +. .....+... ....+..
T Consensus 234 lQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~-qk~~i~~ 311 (652)
T KOG2376|consen 234 LQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKK-QKQAIYR 311 (652)
T ss_pred HHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHH
Confidence 555666666677777777664 3333222211 112222222111 11 111111110 0111122
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCCCC-cchHHHHHHHHH--HcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHhc
Q 005136 489 GTALTDTYAKSGDIESSRRVFDRMPDKN-EISWTVMVRGLA--ESGYAKESINLFEEMEKTSITPNE--LTILSVLFACS 563 (712)
Q Consensus 489 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~ 563 (712)
-+.++.+| .+..+.+.++-...+... ...+..++.... +......+.+++....+. .|.. ......+....
T Consensus 312 N~~lL~l~--tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~i 387 (652)
T KOG2376|consen 312 NNALLALF--TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKI 387 (652)
T ss_pred HHHHHHHH--hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHH
Confidence 23344443 355667777777776443 233444444332 333577888888877764 3443 44555666678
Q ss_pred ccCcHHHHHHHHH--------hcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC--------CCCCC-HHHHHHH
Q 005136 564 HSGLVDKGLKYFN--------SMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM--------PFEPD-SNAWASL 626 (712)
Q Consensus 564 ~~g~~~~a~~~~~--------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~l 626 (712)
..|+++.|.+++. .+. .+.-.+.+...+...+.+.++.+-|..++.+. ...+. ..++..+
T Consensus 388 s~gn~~~A~~il~~~~~~~~ss~~---~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~a 464 (652)
T KOG2376|consen 388 SQGNPEVALEILSLFLESWKSSIL---EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREA 464 (652)
T ss_pred hcCCHHHHHHHHHHHhhhhhhhhh---hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHH
Confidence 8999999999998 443 22334566777788888877766666666554 11222 3334444
Q ss_pred HHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHH
Q 005136 627 LSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVR 677 (712)
Q Consensus 627 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~ 677 (712)
+..-.+.|+.++|...++++++.+|++..++..|+.+|.+.. .+.|..+-
T Consensus 465 a~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~ 514 (652)
T KOG2376|consen 465 AEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLS 514 (652)
T ss_pred hHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHh
Confidence 555567899999999999999999999999999999999885 56776653
No 62
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=4e-08 Score=101.27 Aligned_cols=342 Identities=11% Similarity=0.081 Sum_probs=183.6
Q ss_pred CCceeHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHH
Q 005136 279 RNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYS--FKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNA 356 (712)
Q Consensus 279 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 356 (712)
.|+..-+..+.++...+-+.+-++++++..-.+ +.-+...-+.++-...+ -+...+.+..+.+-... .| .
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~------~ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-AP------D 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-ch------h
Confidence 355556666777777777777888877775322 11122222333333332 23344444444433221 11 1
Q ss_pred HHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHH
Q 005136 357 LIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVF 436 (712)
Q Consensus 357 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 436 (712)
+...+...+-+++|..+|++..-. ..+.+.++. ..+..+.|.+.-++..+ +..|..+..+-.+.|...+|+
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n----~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAi 1124 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMN----VSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAI 1124 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhccc----HHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHH
Confidence 333445556667777777665322 122222222 23455555555555443 345777777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCC
Q 005136 437 AVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKN 516 (712)
Q Consensus 437 ~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 516 (712)
+-|-+. -|+..|.-++..+.+.|.+++-..++...++....|.+. ..|+-+|++.+++.+-.+++. .|+
T Consensus 1125 eSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~---gpN 1193 (1666)
T KOG0985|consen 1125 ESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA---GPN 1193 (1666)
T ss_pred HHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc---CCC
Confidence 666432 456677777777778888887777777777665555443 456667777777776666543 345
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHH
Q 005136 517 EISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVD 596 (712)
Q Consensus 517 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 596 (712)
..-.....+-|...|.++.|.-+|.... .|..|...+...|++..|...-++.. +..+|..+..
T Consensus 1194 ~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKAn-------s~ktWK~Vcf 1257 (1666)
T KOG0985|consen 1194 VANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKAN-------STKTWKEVCF 1257 (1666)
T ss_pred chhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhcc-------chhHHHHHHH
Confidence 4445555556666666665555544322 24455555555566665555444332 4455555555
Q ss_pred HhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 005136 597 MLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYAS 666 (712)
Q Consensus 597 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 666 (712)
+|...+.+.-|.-. -+.+--...-+..++..|...|-+++.+.+++.++-+..-+...+.-|+.+|.+
T Consensus 1258 aCvd~~EFrlAQiC--GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1258 ACVDKEEFRLAQIC--GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHhchhhhhHHHhc--CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 55554444332211 001112233344455555556666666666665555555555555555554443
No 63
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=2.1e-10 Score=102.88 Aligned_cols=265 Identities=11% Similarity=0.081 Sum_probs=173.7
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCc---HHHHHHHHHHHHhcCChHH
Q 005136 293 QSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKD---VFISNALIDLYSKCGETKD 369 (712)
Q Consensus 293 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~ 369 (712)
-++++++|.++|-+|.+. -+-+..+-..+.+.+.+.|..+.|+++.+.+.++.--+. ......|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~-d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQE-DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhc-CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 357889999999999872 122344556777788888999999999988887621111 2345567788899999999
Q ss_pred HHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcc--------cHHHHHHHHHhcCChhHHHHHHHH
Q 005136 370 GRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDV--------SWSAIISGYLEHKQFDLVFAVFNE 441 (712)
Q Consensus 370 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~a~~~~~~ 441 (712)
|+.+|..+.+.+.--..+...|+..|-...+|++|++.-+++.+-+.. .|..+...+....+.+.|..++.+
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 999999998866555667788888888899999998887766644333 344455555566777778888777
Q ss_pred HHHCCCCCCH-HHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC--CCcc
Q 005136 442 MLLSGEIPNK-STFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPD--KNEI 518 (712)
Q Consensus 442 ~~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~ 518 (712)
..+.+ |+. ..-..+-+.....|+++.|.+.++.+.+.+...-+.+...|..+|...|+.++....+..+.+ ++..
T Consensus 206 Alqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 206 ALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred HHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 77653 222 222233445666777777777777777766555566666677777777777776666666542 3333
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 005136 519 SWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFAC 562 (712)
Q Consensus 519 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 562 (712)
.-..+........-.+.|...+.+-+. -+|+...+..++..-
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~ 325 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhh
Confidence 444444444444445555555444444 356666666666544
No 64
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.39 E-value=1e-08 Score=103.04 Aligned_cols=442 Identities=15% Similarity=0.111 Sum_probs=255.3
Q ss_pred CChhHHHHHHHHHHccCChHHHHHHhhhCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HhhHHHHH
Q 005136 116 RNEVSWTALISGFMKHGRVEESMWYFERNPF---QNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPN-EVTFSSIC 191 (712)
Q Consensus 116 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~ 191 (712)
.+...|..|.-+..++|+++.+.+.|++... .....|+.+...+...|.-..|..++++-....-+|+ ...+....
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 3556666677777777777777777776443 2344677777777777777777777766554432333 23333333
Q ss_pred HHHhc-ccchHHHHHHHHHHHHhC--C--CCCccHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCH
Q 005136 192 KACAE-INDFRLGLSVFGLIFKAG--F--EKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDL 266 (712)
Q Consensus 192 ~~~~~-~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 266 (712)
..|.+ .+..+++..+...+++.. . ...+..|..+.-+|..
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~----------------------------------- 445 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGF----------------------------------- 445 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHh-----------------------------------
Confidence 34432 455555555555444311 0 0111111111111110
Q ss_pred HHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHc
Q 005136 267 GEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYS-FKPNTSCFSIVLSALASLKALRSGMHVHAHVLKI 345 (712)
Q Consensus 267 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 345 (712)
...+.+.. ..+.....++++.+++..+.+ -.|+...| +.--++-.++++.|.+...+..+.
T Consensus 446 --------~A~~a~~~--------seR~~~h~kslqale~av~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l 507 (799)
T KOG4162|consen 446 --------QARQANLK--------SERDALHKKSLQALEEAVQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREALAL 507 (799)
T ss_pred --------HhhcCCCh--------HHHHHHHHHHHHHHHHHHhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHh
Confidence 00000000 011122456777777776643 33433333 333455567888888888888887
Q ss_pred CCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHH
Q 005136 346 GIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISG 425 (712)
Q Consensus 346 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 425 (712)
+-..+...|..|.-.+...+++.+|+.+.+......+.+......-+..-..-++.++++.....+
T Consensus 508 ~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~-------------- 573 (799)
T KOG4162|consen 508 NRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHK-------------- 573 (799)
T ss_pred cCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHH--------------
Confidence 667778888888888888888888888887776555333333333333334456666664444333
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHH--cCCCCchhhHHHHHHHHHhcC---
Q 005136 426 YLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIK--LGFPYDVFLGTALTDTYAKSG--- 500 (712)
Q Consensus 426 ~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g--- 500 (712)
+.+|+....- ..+ ++-.........+.- ......+.++..+.......+
T Consensus 574 ----------L~~we~~~~~-----q~~-----------~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~ 627 (799)
T KOG4162|consen 574 ----------LALWEAEYGV-----QQT-----------LDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSA 627 (799)
T ss_pred ----------HHHHHhhhhH-----hhh-----------hhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhc
Confidence 3333311000 000 000000001101000 001112222322222222111
Q ss_pred ChHHHHHHhccCCCCC------cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHH
Q 005136 501 DIESSRRVFDRMPDKN------EISWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLK 573 (712)
Q Consensus 501 ~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 573 (712)
..+.....+...+.|+ ...|......+...+..++|...+.+... +.| ....|......+...|...+|.+
T Consensus 628 ~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~ 705 (799)
T KOG4162|consen 628 GSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKE 705 (799)
T ss_pred ccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHH
Confidence 1111111112222232 22466677788889999999988888776 445 44667777778888999999999
Q ss_pred HHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHH--HHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 005136 574 YFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAED--FINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWK 648 (712)
Q Consensus 574 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 648 (712)
.|.... .+.| ++....+++.++.+.|+..-|.. ++..+ +..|+ ...|..+...+...|+.+.|.+.|..+++
T Consensus 706 af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 706 AFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 998887 5688 68899999999999998777777 77776 66665 88899999999999999999999999999
Q ss_pred cCCCCCc
Q 005136 649 LAEEHPA 655 (712)
Q Consensus 649 ~~p~~~~ 655 (712)
+++.+|.
T Consensus 783 Le~S~PV 789 (799)
T KOG4162|consen 783 LEESNPV 789 (799)
T ss_pred hccCCCc
Confidence 9887763
No 65
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=2.2e-07 Score=96.02 Aligned_cols=496 Identities=13% Similarity=0.156 Sum_probs=283.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhh-----HHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHH
Q 005136 152 WTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVT-----FSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLI 226 (712)
Q Consensus 152 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 226 (712)
+-.+.+.|.++|-...|++.+.++..- +..... =..+ -.+.-.-.++.+.+.+..|+..++.-+..+.-.+.
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DI--KR~vVhth~L~pEwL-v~yFg~lsve~s~eclkaml~~NirqNlQi~VQva 685 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDI--KRVVVHTHLLNPEWL-VNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVA 685 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHH--HHHHHHhccCCHHHH-HHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 567777778888888887777665421 100000 0011 12222335677777788887777777776666666
Q ss_pred HHHHccCChHHHHHHHhhcCC---------------CCcchHHHHHHHHHhcCCHHHHHHHHhhCCC-------------
Q 005136 227 TLSLKMGEVDLARSVFDRMEK---------------RDVVSWTVILDVFIEMGDLGEARRIFDEMPE------------- 278 (712)
Q Consensus 227 ~~~~~~~~~~~a~~~~~~~~~---------------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~------------- 278 (712)
.-|...=-.+...++|+.... .|+...--.+.+.++.|++.+.+++.++-.-
T Consensus 686 tky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeA 765 (1666)
T KOG0985|consen 686 TKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEA 765 (1666)
T ss_pred HHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhc
Confidence 666665556666667766653 3555556677777788887777777665421
Q ss_pred ------C-----CceeHH-H------------HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH-------------HH
Q 005136 279 ------R-----NEVSWS-V------------MIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCF-------------SI 321 (712)
Q Consensus 279 ------~-----~~~~~~-~------------l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-------------~~ 321 (712)
| |..-|- - .|..|.+.=++.+.-.+.-.+.. +.-+.... ..
T Consensus 766 kL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD--~dC~E~~ik~Li~~v~gq~~~de 843 (1666)
T KOG0985|consen 766 KLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLD--VDCSEDFIKNLILSVRGQFPVDE 843 (1666)
T ss_pred cccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhc--CCCcHHHHHHHHHHHhccCChHH
Confidence 1 111111 1 12223222222222222222111 11111111 12
Q ss_pred HHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHH---------HHHHhh-hcCCCC-ce-----
Q 005136 322 VLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGR---------LVFDSI-VEKDVA-HV----- 385 (712)
Q Consensus 322 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---------~~~~~~-~~~~~~-~~----- 385 (712)
+..-+-+.+++..-...++.....|.. |..++++|...|..+++-.+-. .+..+. .+++|. ..
T Consensus 844 Lv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYer 922 (1666)
T KOG0985|consen 844 LVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYER 922 (1666)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecc
Confidence 333344556666666777777777754 8899999999998876644321 111111 122210 01
Q ss_pred --------------eeHHHHHHHHhccCChhhHHHHhhcC-----------C------CCCcccHHHHHHHHHhcCChhH
Q 005136 386 --------------VSWNSMIGGYGLNGQMEEAKELFDNM-----------P------KRNDVSWSAIISGYLEHKQFDL 434 (712)
Q Consensus 386 --------------~~~~~l~~~~~~~~~~~~a~~~~~~~-----------~------~~~~~~~~~l~~~~~~~~~~~~ 434 (712)
..|....+-+....+.+-=.+++.+- . ..|+...+..+.++...+-+.+
T Consensus 923 GqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~e 1002 (1666)
T KOG0985|consen 923 GQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNE 1002 (1666)
T ss_pred cCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHH
Confidence 11222222233333332222222111 0 1255566777778888888888
Q ss_pred HHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccC
Q 005136 435 VFAVFNEMLLSGE--IPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRM 512 (712)
Q Consensus 435 a~~~~~~~~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 512 (712)
-++++++..-.+- ..+...-+.++- -+-..+..+..++..++-... .|+ +.......+-+++|..+|+..
T Consensus 1003 LIELLEKIvL~~S~Fse~~nLQnLLiL-tAikad~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf 1074 (1666)
T KOG0985|consen 1003 LIELLEKIVLDNSVFSENRNLQNLLIL-TAIKADRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFAIFKKF 1074 (1666)
T ss_pred HHHHHHHHhcCCcccccchhhhhhHHH-HHhhcChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHHHHHHh
Confidence 8888887764321 111122222222 222233444444444443221 111 111222223333444333332
Q ss_pred C-------------------------CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCc
Q 005136 513 P-------------------------DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGL 567 (712)
Q Consensus 513 ~-------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 567 (712)
. -..+..|+.+..+-.+.|...+|++-|-+ ..|...|.-++..+.+.|.
T Consensus 1075 ~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~ 1148 (1666)
T KOG0985|consen 1075 DMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGK 1148 (1666)
T ss_pred cccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCc
Confidence 1 02455799999999999999999887753 2455679999999999999
Q ss_pred HHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHh
Q 005136 568 VDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLW 647 (712)
Q Consensus 568 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 647 (712)
+++-++++...+++ .-.|... ..|+.+|++.++..+-.+++. .|+......+..-|...|.++.|.-+|.-
T Consensus 1149 ~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~-- 1219 (1666)
T KOG0985|consen 1149 YEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN-- 1219 (1666)
T ss_pred HHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--
Confidence 99999999988743 4455443 468889999999888766654 47777788888889999999998888764
Q ss_pred ccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 648 KLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 648 ~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
.+-+..|+..++..|.+..|.+.-++..+
T Consensus 1220 ------vSN~a~La~TLV~LgeyQ~AVD~aRKAns 1248 (1666)
T KOG0985|consen 1220 ------VSNFAKLASTLVYLGEYQGAVDAARKANS 1248 (1666)
T ss_pred ------hhhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 45677888889999999888887665543
No 66
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.38 E-value=3.5e-07 Score=91.45 Aligned_cols=376 Identities=12% Similarity=0.085 Sum_probs=195.7
Q ss_pred ChhHHHHHhhcCcCCCCCCchhhHHHHHHHhhccchhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHHHHh
Q 005136 1 MKASLRSLFSINPETSFNSYIETCLCLLKDITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVK 80 (712)
Q Consensus 1 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 80 (712)
|+.|+.+++.+ +.... ..-.|..+...|.+.|+++.|.++|.+. + .++--|.+|.+.|+++.|.++-+
T Consensus 748 w~kai~ildni-qdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---~------~~~dai~my~k~~kw~da~kla~ 815 (1636)
T KOG3616|consen 748 WKKAISILDNI-QDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---D------LFKDAIDMYGKAGKWEDAFKLAE 815 (1636)
T ss_pred hhhhHhHHHHh-hhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---c------hhHHHHHHHhccccHHHHHHHHH
Confidence 45666777766 33332 2345667777788888888887777432 2 34566778888888888887777
Q ss_pred hcCCCCc--chHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHccCChHHHHHHhhhCCC-CCcccHHHHHH
Q 005136 81 DLNGFDL--VVHNCMINANIQWGNLEEAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERNPF-QNVISWTAAIC 157 (712)
Q Consensus 81 ~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~li~ 157 (712)
+...|.. ..|-+-..-+-++|++.+|.++|-.+.+|+.. |.+|-+.|..++..++.++... .=..+...+..
T Consensus 816 e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~ 890 (1636)
T KOG3616|consen 816 ECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAK 890 (1636)
T ss_pred HhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHH
Confidence 7655543 45555555666778888888887777776644 5677788888888777776432 12234555566
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHH
Q 005136 158 GFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDL 237 (712)
Q Consensus 158 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 237 (712)
-+-..|+...|..-|-+.. -|..-++.|..++.|+.|-++-. ..| ..+.. ..++-..++.---+.
T Consensus 891 e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriak---teg-g~n~~--k~v~flwaksiggda 955 (1636)
T KOG3616|consen 891 ELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAK---TEG-GANAE--KHVAFLWAKSIGGDA 955 (1636)
T ss_pred HHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHh---ccc-cccHH--HHHHHHHHHhhCcHH
Confidence 6666777777766665432 23344455555555555544432 112 11111 112222222222334
Q ss_pred HHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCC-CCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 005136 238 ARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPE-RNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNT 316 (712)
Q Consensus 238 a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 316 (712)
|.+++++.- ....-+...+..+.++-|..+-+-..+ +-....-.+...+-..|++++|-+-|-+.++.+
T Consensus 956 avkllnk~g-----ll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaikln----- 1025 (1636)
T KOG3616|consen 956 AVKLLNKHG-----LLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN----- 1025 (1636)
T ss_pred HHHHHHhhh-----hHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcc-----
Confidence 444444221 111112223344555555554433322 222333344444556777777777766665432
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHh
Q 005136 317 SCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYG 396 (712)
Q Consensus 317 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 396 (712)
||++-.... -..+++ .+.++.|.+|... +.++.+.+++..|.++-+.-..... ...+..-.++-.
T Consensus 1026 -tynitwcqa-vpsrfd------~e~ir~gnkpe~a-----v~mfi~dndwa~aervae~h~~~~l--~dv~tgqar~ai 1090 (1636)
T KOG3616|consen 1026 -TYNITWCQA-VPSRFD------AEFIRAGNKPEEA-----VEMFIHDNDWAAAERVAEAHCEDLL--ADVLTGQARGAI 1090 (1636)
T ss_pred -cccchhhhc-ccchhh------HHHHHcCCChHHH-----HHHhhhcccHHHHHHHHHhhChhhh--HHHHhhhhhccc
Confidence 111110000 000111 1223334444322 2345666777777666543322222 223344445555
Q ss_pred ccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 005136 397 LNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAV 438 (712)
Q Consensus 397 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 438 (712)
..|++.+|..++-+..+|+.. ++.|...+-|..|+++
T Consensus 1091 ee~d~~kae~fllrankp~i~-----l~yf~e~~lw~dalri 1127 (1636)
T KOG3616|consen 1091 EEGDFLKAEGFLLRANKPDIA-----LNYFIEAELWPDALRI 1127 (1636)
T ss_pred cccchhhhhhheeecCCCchH-----HHHHHHhccChHHHHH
Confidence 667777777777666666542 3344444545444444
No 67
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=2.3e-08 Score=93.04 Aligned_cols=303 Identities=12% Similarity=0.036 Sum_probs=190.7
Q ss_pred CCCCHHHHHHHHHHHhc--cCChhhHHHHHHHHHHc-CCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeH
Q 005136 312 FKPNTSCFSIVLSALAS--LKALRSGMHVHAHVLKI-GIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSW 388 (712)
Q Consensus 312 ~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 388 (712)
++|...+....+.+++. .++...+...+-.+... -++.+......+..++...|+.++|...|++....++.+....
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M 269 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM 269 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence 44444444444444432 33333444443333332 3455677778888888888888888888888877776555555
Q ss_pred HHHHHHHhccCChhhHHHHhhcCCCCC---cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 005136 389 NSMIGGYGLNGQMEEAKELFDNMPKRN---DVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVA 465 (712)
Q Consensus 389 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~ 465 (712)
....-.+.+.|+.+....+...+-..+ ..-|..-+... ...+
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l-----------------------------------~~~K 314 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLL-----------------------------------YDEK 314 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhh-----------------------------------hhhh
Confidence 555555566666666644333322111 11122222222 2344
Q ss_pred chHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHH
Q 005136 466 SLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEE 542 (712)
Q Consensus 466 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 542 (712)
+++.|..+-.+.++.+ +-++..+-.-...+...|+.++|.-.|+... .-+..+|..|+..|...|++.+|.-+-..
T Consensus 315 ~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~ 393 (564)
T KOG1174|consen 315 KFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANW 393 (564)
T ss_pred hHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 5555555555544432 2222333333345566777777777777654 23666788888888888888888777666
Q ss_pred HHHcCCCCCHHHHHHHH-HHh-cccCcHHHHHHHHHhcchhcCCCCc-hHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC
Q 005136 543 MEKTSITPNELTILSVL-FAC-SHSGLVDKGLKYFNSMEPIYNIKPN-GRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP 618 (712)
Q Consensus 543 ~~~~~~~p~~~~~~~l~-~~~-~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 618 (712)
..+. +..+..++..+. ..| ....--++|.++++... .+.|+ ....+.++..+...|+.++++.++++. ...|
T Consensus 394 ~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~ 469 (564)
T KOG1174|consen 394 TIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP 469 (564)
T ss_pred HHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc
Confidence 5553 344555554442 222 23334578899998876 45774 667788889999999999999999987 6678
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCC
Q 005136 619 DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHP 654 (712)
Q Consensus 619 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 654 (712)
|....+.+...+...+.+++|...|..++.++|++.
T Consensus 470 D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 470 DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 888888888888889999999999999999999864
No 68
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.38 E-value=6.5e-11 Score=111.49 Aligned_cols=198 Identities=11% Similarity=0.095 Sum_probs=162.5
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHhccCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005136 485 DVFLGTALTDTYAKSGDIESSRRVFDRMPD---KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFA 561 (712)
Q Consensus 485 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 561 (712)
....+..+...+...|++++|...+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 355667778888889999999998887653 345567788889999999999999999998853 3345667788888
Q ss_pred hcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHH
Q 005136 562 CSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIA 639 (712)
Q Consensus 562 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a 639 (712)
+...|++++|.+.++++............+..++.++...|++++|...+++. ...|+ ...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998743222224567788899999999999999999987 33443 66777888889999999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 640 ERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 640 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
...++++.+..|+++..+..++.++...|+.++|..+.+.+.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999998888999999999999999999999998887653
No 69
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.37 E-value=5.5e-10 Score=103.59 Aligned_cols=276 Identities=10% Similarity=0.065 Sum_probs=155.4
Q ss_pred cCChhhHHHHhhcCCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHH
Q 005136 398 NGQMEEAKELFDNMPKR---NDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLH 474 (712)
Q Consensus 398 ~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 474 (712)
.|++.+|+++..+-.+. ....|-.-+.+.-+.|+.+.+-.++.+..+.--.++...+..........|+++.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 67888887777665432 222344445555666777777777777666433444445555555666667777776666
Q ss_pred HHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCc-----------chHHHHHHHHHHcCChHHHHHHHHHH
Q 005136 475 GKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNE-----------ISWTVMVRGLAESGYAKESINLFEEM 543 (712)
Q Consensus 475 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~A~~~~~~~ 543 (712)
..+.+.+ +-.+.......++|.+.|++.+...++..+.+... .+|+.+++-....+..+.-...|+..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 6666654 33455556666666777777777666666654321 23444555444444444444455544
Q ss_pred HHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC--CCCCCHH
Q 005136 544 EKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM--PFEPDSN 621 (712)
Q Consensus 544 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~ 621 (712)
... .+-+...-..++.-+...|+.++|.++.++.. +.+.+|+ ...++. ..+-++...=++..++. ....++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~L-k~~~D~~---L~~~~~-~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDAL-KRQWDPR---LCRLIP-RLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHH-HhccChh---HHHHHh-hcCCCCchHHHHHHHHHHHhCCCChh
Confidence 332 33444445555556666667777766666665 2344443 111111 22334433333333322 1112235
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHH
Q 005136 622 AWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMT 681 (712)
Q Consensus 622 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 681 (712)
.+.++...|.+++.|.+|...++.+++..|+ ...+..++.++.+.|+.++|.+..++.+
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 5566666677777777777777777666665 5566677777777777777777666654
No 70
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.36 E-value=4.8e-11 Score=102.01 Aligned_cols=161 Identities=18% Similarity=0.158 Sum_probs=143.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHH
Q 005136 520 WTVMVRGLAESGYAKESINLFEEMEKTSITPNE-LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDM 597 (712)
Q Consensus 520 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 597 (712)
...|...|...|+...|..-+++.++ ..|+. .++..+...|.+.|+.+.|.+.|++.. .+.| +..+.|..+..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHH
Confidence 44577789999999999999999998 56765 678888889999999999999999988 5678 78899999999
Q ss_pred hhhcCChHHHHHHHHhCCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhH
Q 005136 598 LSRSGRLSEAEDFINSMPFEPD----SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDA 673 (712)
Q Consensus 598 ~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA 673 (712)
+|..|++++|...|++.-..|. ..+|.++..+..+.|+.+.|++.++++++++|+++.....++......|++-+|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999999854443 778888988889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 005136 674 MNVRKLMTEKGL 685 (712)
Q Consensus 674 ~~~~~~~~~~~~ 685 (712)
..++++....+.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999999887764
No 71
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=1.5e-08 Score=92.17 Aligned_cols=442 Identities=12% Similarity=0.083 Sum_probs=254.1
Q ss_pred HHHhhccchhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHHHHhhc---CCCCcchHHHHHHHHHhcCChH
Q 005136 28 LKDITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVKDL---NGFDLVVHNCMINANIQWGNLE 104 (712)
Q Consensus 28 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~ 104 (712)
+.-...+.+++.|..+++.....+-+....+..-+..++...|++++|...+..+ ..++...+--|..+.--.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 4556677889999999998886665544444445677888999999999998887 3466778888888888889999
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 005136 105 EAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNE 184 (712)
Q Consensus 105 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 184 (712)
+|..+-.+..+. +---..|.+.--+.|+-++-..+-+.+.. ....-.++.......-.+.+|++++.+....+ |+-
T Consensus 109 eA~~~~~ka~k~-pL~~RLlfhlahklndEk~~~~fh~~LqD-~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey 184 (557)
T KOG3785|consen 109 EAKSIAEKAPKT-PLCIRLLFHLAHKLNDEKRILTFHSSLQD-TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEY 184 (557)
T ss_pred HHHHHHhhCCCC-hHHHHHHHHHHHHhCcHHHHHHHHHHHhh-hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhh
Confidence 999888776543 22223344444555665555444443332 12233345555555567888888888877642 333
Q ss_pred hhHHH-HHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHh-
Q 005136 185 VTFSS-ICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIE- 262 (712)
Q Consensus 185 ~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~- 262 (712)
...+. +.-+|.+..-++-+..++..-++. ++.++...|.......+.=.-..|..-.+.+...-...| ..+.-+++
T Consensus 185 ~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~-~f~~~l~rH 262 (557)
T KOG3785|consen 185 IALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY-PFIEYLCRH 262 (557)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc-hhHHHHHHc
Confidence 33333 334555666677777777766654 344444555544444433221122222222211111111 11122222
Q ss_pred ----cCCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-----hccCChh
Q 005136 263 ----MGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSAL-----ASLKALR 333 (712)
Q Consensus 263 ----~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-----~~~~~~~ 333 (712)
..+-+.|.+++-.+.+.-+.+--.|+-.|.+.++.++|..+.+++.. ..|-......+..+. .......
T Consensus 263 NLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlK 340 (557)
T KOG3785|consen 263 NLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLK 340 (557)
T ss_pred CeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHH
Confidence 12334555555444443334444556667777777777777666432 333332222222221 2223455
Q ss_pred hHHHHHHHHHHcCCCCc-HHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCC
Q 005136 334 SGMHVHAHVLKIGIEKD-VFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMP 412 (712)
Q Consensus 334 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (712)
.|.+.|+.+-..+.+-| +.-..++...+.-..++++.+..+..+..--..+....-.+.++.+..|.+.+|+++|-.+.
T Consensus 341 iAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is 420 (557)
T KOG3785|consen 341 IAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRIS 420 (557)
T ss_pred HHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhc
Confidence 66666666655554433 23344555556666677777777777766555444444556777777888888888887777
Q ss_pred CC---CcccHH-HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHhccCchHHHHHHHHHHHHc
Q 005136 413 KR---NDVSWS-AIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSS-VLCASASVASLEKGKDLHGKIIKL 480 (712)
Q Consensus 413 ~~---~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~ 480 (712)
.| |..+|. .|.++|...+.++.|+.++-++-. +.+..+... +..-|.+.+.+--|.+.|+.+...
T Consensus 421 ~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 421 GPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred ChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 54 344444 456777888888777777655422 223333333 334666777776677777776654
No 72
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.30 E-value=7.3e-08 Score=97.32 Aligned_cols=244 Identities=14% Similarity=0.055 Sum_probs=148.0
Q ss_pred hhccchhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHHHHhhc-------------CCCCcchHHHHHHHH
Q 005136 31 ITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVKDL-------------NGFDLVVHNCMINAN 97 (712)
Q Consensus 31 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------------~~~~~~~~~~l~~~~ 97 (712)
|..-|+.+.|-.-...+. +..+|..+..++.+..+++-|.-.+..| ..++ ..-..+...-
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 455566665544333222 2335555666666665555555554444 1232 2222222233
Q ss_pred HhcCChHHHHHHHhhCCCCChhHHHHHHHHHHccCChHHHHHHhhhCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHH
Q 005136 98 IQWGNLEEAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERNPFQN-VISWTAAICGFVQNGFSFEALKLFLKLL 176 (712)
Q Consensus 98 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 176 (712)
.+.|.+++|+.+|++.++ |..|=..|...|++++|.++-+.-.+-- -.+|.....-+-..++.+.|++.|++..
T Consensus 811 ieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~ 885 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAG 885 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcC
Confidence 467889999999987654 3445566778899999988876543321 2356666666666788888888888643
Q ss_pred HcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHH
Q 005136 177 ESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVI 256 (712)
Q Consensus 177 ~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 256 (712)
- |-...+..|. .++....+..+.+ .|...|.--...+-..|+.+.|+.++.... .|-++
T Consensus 886 ~----hafev~rmL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~ 944 (1416)
T KOG3617|consen 886 V----HAFEVFRMLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSM 944 (1416)
T ss_pred C----hHHHHHHHHH------hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhh
Confidence 1 1111111111 1223333333332 233445555555556788999988888543 46677
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005136 257 LDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTR 309 (712)
Q Consensus 257 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 309 (712)
++..|-.|+.++|..+-++- .|..++-.+.+.|-..|++.+|...|.+...
T Consensus 945 VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 945 VRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred eeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 77888888888888887664 3556677788899999999999999887653
No 73
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=2.2e-08 Score=93.08 Aligned_cols=265 Identities=10% Similarity=0.022 Sum_probs=194.9
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHH
Q 005136 414 RNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKS-TFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTAL 492 (712)
Q Consensus 414 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 492 (712)
.|+.....+...+...|+.++|...|+..... .|... ......-.+.+.|+++....+...+.... ..+...+..-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 46777788888888888888888888887653 23322 22222333467788888877777766532 1122222222
Q ss_pred HHHHHhcCChHHHHHHhccCCCCCcc---hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcH
Q 005136 493 TDTYAKSGDIESSRRVFDRMPDKNEI---SWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLV 568 (712)
Q Consensus 493 ~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 568 (712)
........+++.|..+-++..+.++. .+-.-...+...|++++|.-.|+..+. +.| +...|..|+.+|...|.+
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchH
Confidence 23344567888999888887755444 444444678899999999999999988 676 568999999999999999
Q ss_pred HHHHHHHHhcchhcCCCCchHHHHHHH-HHhh-hcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHhhcCCHHHHHHHHH
Q 005136 569 DKGLKYFNSMEPIYNIKPNGRHYTCVV-DMLS-RSGRLSEAEDFINSM-PFEPDS-NAWASLLSGCKTYKNEQIAERAVK 644 (712)
Q Consensus 569 ~~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~ 644 (712)
.+|.-.-....+. +..+..+...++ ..+. ...--++|.+++++. .++|+. .....+...|...|..+.++.+++
T Consensus 385 kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 385 KEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 9998877766522 233666776664 3333 334468899999987 788884 445666777999999999999999
Q ss_pred HHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 005136 645 NLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 645 ~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 686 (712)
+.+...|+ ...+..|+.++...+.+.+|++.|...++.++.
T Consensus 463 ~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 463 KHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 99999998 679999999999999999999999998876654
No 74
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=1.5e-07 Score=92.09 Aligned_cols=454 Identities=12% Similarity=0.084 Sum_probs=223.2
Q ss_pred HHHHHhcCCChhHhHHHHhhcC---CCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHH--HccCChHH
Q 005136 62 LLIMYLGSRKSLEANEIVKDLN---GFDLVVHNCMINANIQWGNLEEAQRLFDGMPERNEVSWTALISGF--MKHGRVEE 136 (712)
Q Consensus 62 l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~ 136 (712)
=+..+..+|++++|.+...++. +.+..++.+-+.++.+.+.+++|+.+.+.-..........+=.+| .+.++.++
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHH
Confidence 3556678888888888877772 345678888888899999999998666543321111111123344 47888888
Q ss_pred HHHHhhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-hhHHHHHHHHhcccchHHHHHHHHHHHHhCC
Q 005136 137 SMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNE-VTFSSICKACAEINDFRLGLSVFGLIFKAGF 215 (712)
Q Consensus 137 a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 215 (712)
|...++...+.+..+...-.+.+.+.|++++|+++|+.+.+.+..--. ..-..++.+-.. .. .+.+.....
T Consensus 98 alk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~-------l~-~~~~q~v~~ 169 (652)
T KOG2376|consen 98 ALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA-------LQ-VQLLQSVPE 169 (652)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-------hh-HHHHHhccC
Confidence 888888666666666677777888888888898888888776543111 111111111100 00 111111111
Q ss_pred CCCccHHHHH---HHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhh-CCCCC---------c-
Q 005136 216 EKHVSVCNSL---ITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDE-MPERN---------E- 281 (712)
Q Consensus 216 ~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~---------~- 281 (712)
.| ..+|..+ ...++..|++..|+++++...+ +-.+ +...| .
T Consensus 170 v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~------------------------~~~e~l~~~d~~eEeie~el~ 224 (652)
T KOG2376|consen 170 VP-EDSYELLYNTACILIENGKYNQAIELLEKALR------------------------ICREKLEDEDTNEEEIEEELN 224 (652)
T ss_pred CC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHH------------------------HHHHhhcccccchhhHHHHHH
Confidence 22 2233322 3345566777777777764311 0000 01100 0
Q ss_pred eeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH----HHHHHHHhccCChhh--HHHHHHHHHHcCCCCcHHHHH
Q 005136 282 VSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCF----SIVLSALASLKALRS--GMHVHAHVLKIGIEKDVFISN 355 (712)
Q Consensus 282 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~----~~ll~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~ 355 (712)
..-..|...+...|+.++|..+|...++.. ++|.... |.++ ++....++-. ++..++.....
T Consensus 225 ~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~---------- 292 (652)
T KOG2376|consen 225 PIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFK---------- 292 (652)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHH----------
Confidence 122345566778899999999999888755 3333222 2222 2222222111 11111111100
Q ss_pred HHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCC-cccHHHHHHHH--HhcCCh
Q 005136 356 ALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRN-DVSWSAIISGY--LEHKQF 432 (712)
Q Consensus 356 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~l~~~~--~~~~~~ 432 (712)
.+......+..........-+.++..| .+..+.+.++....+... ...+..++... ++...+
T Consensus 293 -------------l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~ 357 (652)
T KOG2376|consen 293 -------------LAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKH 357 (652)
T ss_pred -------------hHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHH
Confidence 000000000000000000001111111 122233333333333221 11122222211 111124
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHH--------HHHHcCCCCchhhHHHHHHHHHhcCChHH
Q 005136 433 DLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHG--------KIIKLGFPYDVFLGTALTDTYAKSGDIES 504 (712)
Q Consensus 433 ~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 504 (712)
..+..++....+....-........+......|+++.|.+++. .+.+. ...+.+...++..+.+.++.+.
T Consensus 358 ~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~--~~~P~~V~aiv~l~~~~~~~~~ 435 (652)
T KOG2376|consen 358 KKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA--KHLPGTVGAIVALYYKIKDNDS 435 (652)
T ss_pred hhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh--ccChhHHHHHHHHHHhccCCcc
Confidence 4445555444433211112333444455556666666666665 22222 2334445556666666666666
Q ss_pred HHHHhccCCC------CC----cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHH
Q 005136 505 SRRVFDRMPD------KN----EISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKY 574 (712)
Q Consensus 505 A~~~~~~~~~------~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 574 (712)
|..++....+ .. ..++.-++..-.++|+.++|..+++++.+. .++|..+...++.+|++. |.+.|..+
T Consensus 436 a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l 513 (652)
T KOG2376|consen 436 ASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESL 513 (652)
T ss_pred HHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHH
Confidence 6666555431 11 112333444455778888888888888884 255667777888888776 56777766
Q ss_pred HHhcc
Q 005136 575 FNSME 579 (712)
Q Consensus 575 ~~~~~ 579 (712)
-..+.
T Consensus 514 ~k~L~ 518 (652)
T KOG2376|consen 514 SKKLP 518 (652)
T ss_pred hhcCC
Confidence 65554
No 75
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.27 E-value=1.9e-10 Score=103.08 Aligned_cols=227 Identities=11% Similarity=0.036 Sum_probs=167.9
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC--C-CcchHHHHHHHHHH
Q 005136 453 TFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPD--K-NEISWTVMVRGLAE 529 (712)
Q Consensus 453 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~ 529 (712)
.-..+..+|.+.|.+.+|.+.++...+. .|-+.+|-.|.+.|.+..++..|..++.+..+ | |+.....+...+..
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH
Confidence 3345555666666666666666655554 34455566666777777777777777776653 2 33334445666777
Q ss_pred cCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHH
Q 005136 530 SGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAE 608 (712)
Q Consensus 530 ~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 608 (712)
.++.++|.++++...+. .| +......+...|.-.++.+-|+.+|+++.+ .|+ .++..|+.++-+|.-.++++-++
T Consensus 303 m~~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG~-~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRILQ-MGA-QSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHhHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHHHH-hcC-CChHHHhhHHHHHHhhcchhhhH
Confidence 78888888888888774 34 344555566667777888888888888873 243 36788888888888888999888
Q ss_pred HHHHhC---CCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 609 DFINSM---PFEPD--SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 609 ~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
.-|++. ...|+ ...|-++.......||+..|.+.++-++..+|++.++++.|+.+-.+.|+.++|+.+++...+.
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 888876 12343 6778888888888999999999999999999999999999999999999999999999988775
Q ss_pred CC
Q 005136 684 GL 685 (712)
Q Consensus 684 ~~ 685 (712)
.+
T Consensus 459 ~P 460 (478)
T KOG1129|consen 459 MP 460 (478)
T ss_pred Cc
Confidence 53
No 76
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.26 E-value=6.1e-08 Score=100.17 Aligned_cols=142 Identities=14% Similarity=0.054 Sum_probs=77.9
Q ss_pred HHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 005136 368 KDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMP---KRNDVSWSAIISGYLEHKQFDLVFAVFNEMLL 444 (712)
Q Consensus 368 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 444 (712)
..|...+.+..+....+...|+.|.-. ...|.+.-+.-.|-.-. .....+|..+.-.+.+..+++-|...|...+.
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 456777777776666667777776655 55566666655554433 23556777777778888888888888877765
Q ss_pred CCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHH----cCCCCchhhHHHHHHHHHhcCChHHHHHHhcc
Q 005136 445 SGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIK----LGFPYDVFLGTALTDTYAKSGDIESSRRVFDR 511 (712)
Q Consensus 445 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 511 (712)
.. +.+...+..........|+.-+...++..-.. .|--+...-+..........|+.++-+...+.
T Consensus 879 Ld-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~k 948 (1238)
T KOG1127|consen 879 LD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARK 948 (1238)
T ss_pred cC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhh
Confidence 42 22333443333333445555555555554211 22233333333333334445554444443333
No 77
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.25 E-value=5.8e-08 Score=98.66 Aligned_cols=144 Identities=13% Similarity=0.036 Sum_probs=83.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHc----C----------CCCcHH--HHHHHHHHHHh
Q 005136 300 AFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKI----G----------IEKDVF--ISNALIDLYSK 363 (712)
Q Consensus 300 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~~--~~~~l~~~~~~ 363 (712)
+...+..+...|+++ +|+.+-..+..........+++...... + -+|+.. ++.-+...|-.
T Consensus 130 ~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~ 206 (517)
T PF12569_consen 130 LDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY 206 (517)
T ss_pred HHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH
Confidence 444555556666543 3444444444444444444444444322 0 123332 34556677777
Q ss_pred cCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCC---CcccHHHHHHHHHhcCChhHHHHHHH
Q 005136 364 CGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKR---NDVSWSAIISGYLEHKQFDLVFAVFN 440 (712)
Q Consensus 364 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~ 440 (712)
.|++++|+.++++..+..|..+..|..-.+.+-+.|++.+|.+.++....- |...=+..+..+.+.|++++|.+++.
T Consensus 207 ~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~ 286 (517)
T PF12569_consen 207 LGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTAS 286 (517)
T ss_pred hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888888888888777766777777777888888888876665555432 33344444555556666666666666
Q ss_pred HHHHCC
Q 005136 441 EMLLSG 446 (712)
Q Consensus 441 ~~~~~g 446 (712)
.....+
T Consensus 287 ~Ftr~~ 292 (517)
T PF12569_consen 287 LFTRED 292 (517)
T ss_pred hhcCCC
Confidence 655544
No 78
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.25 E-value=1.4e-09 Score=108.71 Aligned_cols=192 Identities=13% Similarity=0.194 Sum_probs=132.2
Q ss_pred HHHHHHHhcCChHHHHHHhccCCC-------C-C---cchHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCC-CCH-
Q 005136 491 ALTDTYAKSGDIESSRRVFDRMPD-------K-N---EISWTVMVRGLAESGYAKESINLFEEMEK-----TSIT-PNE- 552 (712)
Q Consensus 491 ~l~~~~~~~g~~~~A~~~~~~~~~-------~-~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~-p~~- 552 (712)
.+...|...+++++|..+|+++.. + + ..+++.|..+|...|++++|...+++..+ .|.. |..
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 345556666666666666655531 1 1 12456666667777777766666665433 1222 222
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHhcchhcC--CCC----chHHHHHHHHHhhhcCChHHHHHHHHhC---------CCC
Q 005136 553 LTILSVLFACSHSGLVDKGLKYFNSMEPIYN--IKP----NGRHYTCVVDMLSRSGRLSEAEDFINSM---------PFE 617 (712)
Q Consensus 553 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~ 617 (712)
..++.+...|...+.++.|..+++...+... ..+ -..+++.|+..|...|++++|.++++++ +..
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 2356666778888888888888876653322 122 2457889999999999999999999886 112
Q ss_pred CC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhcc----CCCC---CchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 618 PD-SNAWASLLSGCKTYKNEQIAERAVKNLWKL----AEEH---PAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 618 p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
+. ...++.+...|.+.++.++|.+++.++... .|++ ...|..|+.+|.+.|++++|.++.+.+..
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 22 556778888899999999999999988653 3444 45788999999999999999999988763
No 79
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.24 E-value=1.9e-07 Score=92.31 Aligned_cols=446 Identities=14% Similarity=0.115 Sum_probs=240.3
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHH
Q 005136 161 QNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARS 240 (712)
Q Consensus 161 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 240 (712)
..+.+...+.+.+...+. .+-...|.....-.+...|+.++|........+.+ .-+...|..+.-.+-...++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHH
Confidence 345555666666555552 33334454444445555667777777666665533 3344556666555556667777777
Q ss_pred HHhhcCC---CCcchHHHHHHHHHhcCCHHHHHHHHhhCCC---CCceeHHHHHHHHHhcCChhHHHHHHHHHHhCC-CC
Q 005136 241 VFDRMEK---RDVVSWTVILDVFIEMGDLGEARRIFDEMPE---RNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYS-FK 313 (712)
Q Consensus 241 ~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~ 313 (712)
.|..... .|...|..+.-.-++.|+++.....-....+ .....|..++.++.-.|++..|..++++..+.. -.
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 7776654 3344455444444555555554444444332 344578888888888999999999999887654 35
Q ss_pred CCHHHHHHHHHH------HhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceee
Q 005136 314 PNTSCFSIVLSA------LASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVS 387 (712)
Q Consensus 314 p~~~~~~~ll~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 387 (712)
|+...|...... ....|..+.|.+.+...... +......-..-...+.+.+++++|..++..+..++|.+...
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Y 255 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDY 255 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHH
Confidence 666665544333 34567777777766554332 11122333455677889999999999999999999877777
Q ss_pred HHHHHHHHhccCChhhHH-HHhhcCCCC--CcccHHHH-HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 005136 388 WNSMIGGYGLNGQMEEAK-ELFDNMPKR--NDVSWSAI-ISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASAS 463 (712)
Q Consensus 388 ~~~l~~~~~~~~~~~~a~-~~~~~~~~~--~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~ 463 (712)
|..+..++.+-.+..+++ .+|....+. ....-..+ +.......-.+..-.++..+.+.|+++-...+.++- -.
T Consensus 256 y~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLy---k~ 332 (700)
T KOG1156|consen 256 YEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLY---KD 332 (700)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHH---hc
Confidence 777777776333333343 555554421 11111111 111111222334456677778888776554444443 22
Q ss_pred cCchHHHHHHHHHHHH----cCC----------CCchhhH--HHHHHHHHhcCChHHHHHHhccCCCCCcch---HHHHH
Q 005136 464 VASLEKGKDLHGKIIK----LGF----------PYDVFLG--TALTDTYAKSGDIESSRRVFDRMPDKNEIS---WTVMV 524 (712)
Q Consensus 464 ~~~~~~a~~~~~~~~~----~~~----------~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~l~ 524 (712)
....+-.+++...+.. .|. +|+...| ..++..|-+.|+++.|...++......+.. |..-.
T Consensus 333 p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~Ka 412 (700)
T KOG1156|consen 333 PEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKA 412 (700)
T ss_pred hhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHH
Confidence 2222222222222221 110 2332222 234455556666666666666666443332 33334
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC--chH----HHH--HHHH
Q 005136 525 RGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP--NGR----HYT--CVVD 596 (712)
Q Consensus 525 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~----~~~--~l~~ 596 (712)
+.+...|+.++|..++++..+.. .||...=..-.....+.+..++|.++..... +.|... +.. .|. .=+.
T Consensus 413 RI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFT-r~~~~~~~~L~~mqcmWf~~E~g~ 490 (700)
T KOG1156|consen 413 RIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFT-REGFGAVNNLAEMQCMWFQLEDGE 490 (700)
T ss_pred HHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhh-hcccchhhhHHHhhhHHHhHhhhH
Confidence 55666666666666666666632 2222222244445556666666666666655 223211 111 111 1144
Q ss_pred HhhhcCChHHHHHHHHhC
Q 005136 597 MLSRSGRLSEAEDFINSM 614 (712)
Q Consensus 597 ~~~~~g~~~~A~~~~~~~ 614 (712)
+|.+.|++..|++-|..+
T Consensus 491 ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 491 AYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHHHHHHHHHHHHHHhhH
Confidence 556666666666555544
No 80
>PRK12370 invasion protein regulator; Provisional
Probab=99.22 E-value=2.3e-09 Score=113.10 Aligned_cols=243 Identities=12% Similarity=0.070 Sum_probs=169.6
Q ss_pred hhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHh---------ccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC
Q 005136 432 FDLVFAVFNEMLLSGEIPNK-STFSSVLCASA---------SVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGD 501 (712)
Q Consensus 432 ~~~a~~~~~~~~~~g~~p~~-~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 501 (712)
.++|...|++..+. .|+. ..+..+..++. ..+++++|...+++..+.. +.+...+..+..++...|+
T Consensus 277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 35567777777664 3433 33333333222 3345778888888887764 4466777778888888999
Q ss_pred hHHHHHHhccCCC--C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHh
Q 005136 502 IESSRRVFDRMPD--K-NEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNEL-TILSVLFACSHSGLVDKGLKYFNS 577 (712)
Q Consensus 502 ~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~ 577 (712)
+++|...|++..+ | +...+..+...+...|++++|+..++++.+ +.|+.. .+..++..+...|++++|+..+++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 9999999998763 3 345688888899999999999999999998 566643 233444456668899999999998
Q ss_pred cchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHH-HHHhhcCCHHHHHHHHHHHhccCCCCC
Q 005136 578 MEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPDSNAWASLL-SGCKTYKNEQIAERAVKNLWKLAEEHP 654 (712)
Q Consensus 578 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~p~~~ 654 (712)
+... ..| ++..+..++.+|...|+.++|...++++ +..|+.......+ ..+...| +.|...++++++..-..+
T Consensus 432 ~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 7632 235 4556788899999999999999999987 4456655544444 4466666 477777777766432322
Q ss_pred chHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 655 AGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 655 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
.-...+..+|.-.|+.+.+..+ +++.+.+
T Consensus 508 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 508 NNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 2233377788888888777766 8887764
No 81
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.22 E-value=5.6e-07 Score=89.15 Aligned_cols=446 Identities=12% Similarity=0.085 Sum_probs=193.1
Q ss_pred HhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 005136 194 CAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIF 273 (712)
Q Consensus 194 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 273 (712)
|...+++...++..+.+++ +.+....+.....-.+...|+.++|..........|+
T Consensus 17 ~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~----------------------- 72 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL----------------------- 72 (700)
T ss_pred HHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCc-----------------------
Confidence 3456778888888888877 4445555555554555567888888877775554332
Q ss_pred hhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHH
Q 005136 274 DEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPN-TSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVF 352 (712)
Q Consensus 274 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 352 (712)
.+.+.|..+.-.+....++++|++.|+.... +.|| ...+.-+.-.-++.++++..........+.. +....
T Consensus 73 -----~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~--~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra 144 (700)
T KOG1156|consen 73 -----KSHVCWHVLGLLQRSDKKYDEAIKCYRNALK--IEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRA 144 (700)
T ss_pred -----ccchhHHHHHHHHhhhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHH
Confidence 2334444444444444555555555555444 2222 2223333223334444444444444444321 11233
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhhhcCC--CCceeeHH------HHHHHHhccCChhhHHHHhhcCCCC---CcccHHH
Q 005136 353 ISNALIDLYSKCGETKDGRLVFDSIVEKD--VAHVVSWN------SMIGGYGLNGQMEEAKELFDNMPKR---NDVSWSA 421 (712)
Q Consensus 353 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~------~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~ 421 (712)
.|..++.++.-.|+...|..+++...+.. .|+...+. .........|..++|.+.+...... ....-.+
T Consensus 145 ~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ 224 (700)
T KOG1156|consen 145 SWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEET 224 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhh
Confidence 34444444555555555555555444333 12222211 1112234445555555554444321 1112233
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH-HHhccCchHHHH-HHHHHHHHcCCCCchhhHHHHHHHHHhc
Q 005136 422 IISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLC-ASASVASLEKGK-DLHGKIIKLGFPYDVFLGTALTDTYAKS 499 (712)
Q Consensus 422 l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~-~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 499 (712)
-...+.+.+++++|..++..++..+ ||..-|...+. ++.+..+..++. .++....+. .|.......+--.....
T Consensus 225 ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~ 300 (700)
T KOG1156|consen 225 KADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNG 300 (700)
T ss_pred HHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCc
Confidence 3445555666666666666666542 44443333332 222222222222 333333221 11000000000000011
Q ss_pred CCh-HHHHHHhccCCCCC-cchHHHHHHHHHHcCChHHHHHHHHHHHH----cC----------CCCCHH--HHHHHHHH
Q 005136 500 GDI-ESSRRVFDRMPDKN-EISWTVMVRGLAESGYAKESINLFEEMEK----TS----------ITPNEL--TILSVLFA 561 (712)
Q Consensus 500 g~~-~~A~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~----------~~p~~~--~~~~l~~~ 561 (712)
.++ +....++....+.. +.++..+...|-.....+-..++...+.. .| -+|... ++.-+...
T Consensus 301 eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh 380 (700)
T KOG1156|consen 301 EELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQH 380 (700)
T ss_pred chhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHH
Confidence 111 11112222222111 12222222222211111111111111110 00 123332 23344555
Q ss_pred hcccCcHHHHHHHHHhcchhcCCCCc-hHHHHHHHHHhhhcCChHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHH
Q 005136 562 CSHSGLVDKGLKYFNSMEPIYNIKPN-GRHYTCVVDMLSRSGRLSEAEDFINSMPF--EPDSNAWASLLSGCKTYKNEQI 638 (712)
Q Consensus 562 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~ 638 (712)
+-..|+++.|..+++... +..|+ +..|..-++++...|.+++|..++++... .||...-...+.-..+.+..++
T Consensus 381 ~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~e 457 (700)
T KOG1156|consen 381 YDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEE 457 (700)
T ss_pred HHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHH
Confidence 666677777777777666 33553 44555556666677777777777766632 2222221223333456666666
Q ss_pred HHHHHHHHhccCCC---------CCchHHHHHHHHHhcCCchhHHHHHH
Q 005136 639 AERAVKNLWKLAEE---------HPAGYVLLSNIYASAGRWIDAMNVRK 678 (712)
Q Consensus 639 a~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~eA~~~~~ 678 (712)
|.+++.+--.-.-+ -.++...=|.+|.++|++-+|++=+.
T Consensus 458 A~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh 506 (700)
T KOG1156|consen 458 AEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFH 506 (700)
T ss_pred HHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHh
Confidence 66666554332211 11233333555666666666665433
No 82
>PF13041 PPR_2: PPR repeat family
Probab=99.19 E-value=5.3e-11 Score=79.13 Aligned_cols=50 Identities=28% Similarity=0.563 Sum_probs=45.1
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc
Q 005136 147 QNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAE 196 (712)
Q Consensus 147 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 196 (712)
||+.+||.+|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999998864
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.19 E-value=1e-09 Score=105.55 Aligned_cols=188 Identities=14% Similarity=0.132 Sum_probs=89.8
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcc
Q 005136 489 GTALTDTYAKSGDIESSRRVFDRMPD---KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPN-ELTILSVLFACSH 564 (712)
Q Consensus 489 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 564 (712)
+..+...|...|+.++|...|++..+ .+...|+.+...+...|++++|+..|++..+ +.|+ ...+..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 44444455555666666555555432 2334555566666666666666666666655 3443 2445555555555
Q ss_pred cCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 005136 565 SGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM-P-FEPDSNAWASLLSGCKTYKNEQIAERA 642 (712)
Q Consensus 565 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~ 642 (712)
.|++++|++.|+.... ..|+..........+...+++++|...+++. . ..|+...+ .+. ....|+...+ ..
T Consensus 145 ~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~-~~~--~~~lg~~~~~-~~ 217 (296)
T PRK11189 145 GGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW-NIV--EFYLGKISEE-TL 217 (296)
T ss_pred CCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH-HHH--HHHccCCCHH-HH
Confidence 6666666666665552 2442221111112223445566666666443 1 12221111 111 1123333222 12
Q ss_pred HHHHh-------ccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 643 VKNLW-------KLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 643 ~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
++.+. ++.|+.+++|..||.++.+.|++++|+..|++.++.++
T Consensus 218 ~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 218 MERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 22221 23344455666666666666666666666666665443
No 84
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=5.4e-07 Score=91.28 Aligned_cols=259 Identities=11% Similarity=0.099 Sum_probs=168.0
Q ss_pred CCChhHHHHHHHH--HHccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHc-C--------CCCC
Q 005136 115 ERNEVSWTALISG--FMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLES-G--------VKPN 183 (712)
Q Consensus 115 ~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~p~ 183 (712)
..|+.|...+++. |..-|+.+.|.+-.+-+. +...|..|...|.+.++.+-|.-.+.-|... | -.|+
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 3577787777764 667888888887766554 4457888888898888888887777666432 1 1122
Q ss_pred HhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCC-CCcchHHHHHHHHHh
Q 005136 184 EVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEK-RDVVSWTVILDVFIE 262 (712)
Q Consensus 184 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~ll~~~~~ 262 (712)
.+=..+.-.....|..++|+.++.+.++.+ .|=..|-..|.+++|.++-+.-.. .-..||......+-.
T Consensus 801 -e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 -EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred -chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 222233334457788899999998887654 344556667889998888764333 233477777778888
Q ss_pred cCCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHH
Q 005136 263 MGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHV 342 (712)
Q Consensus 263 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 342 (712)
.++.+.|++.|++...+--..+..|. .++.....+.+.+ .|...|......+-..|+.+.|+.++...
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHH------hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 88888888888876554322222221 1222222333332 23345555555666778888888888766
Q ss_pred HHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcC
Q 005136 343 LKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNM 411 (712)
Q Consensus 343 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 411 (712)
.+ |.++++..|-.|+.++|-.+-++-. +..+.-.+.+.|...|++.+|+..|.+.
T Consensus 939 ~D---------~fs~VrI~C~qGk~~kAa~iA~esg-----d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 939 KD---------YFSMVRIKCIQGKTDKAARIAEESG-----DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred hh---------hhhheeeEeeccCchHHHHHHHhcc-----cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 54 4556677777788888877765543 2445666777788888888887777654
No 85
>PRK12370 invasion protein regulator; Provisional
Probab=99.17 E-value=2.2e-09 Score=113.24 Aligned_cols=211 Identities=12% Similarity=0.062 Sum_probs=163.5
Q ss_pred CchHHHHHHHHHHHHcCCCCchhhHHHHHHHHH---------hcCChHHHHHHhccCCC---CCcchHHHHHHHHHHcCC
Q 005136 465 ASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYA---------KSGDIESSRRVFDRMPD---KNEISWTVMVRGLAESGY 532 (712)
Q Consensus 465 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 532 (712)
++.++|..++++..+.. +.+...+..+..++. ..+++++|...+++..+ .+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 34678889998888763 334455655655544 23457899999988774 355678888888999999
Q ss_pred hHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCc-hHHHHHHHHHhhhcCChHHHHHH
Q 005136 533 AKESINLFEEMEKTSITPNE-LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPN-GRHYTCVVDMLSRSGRLSEAEDF 610 (712)
Q Consensus 533 ~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 610 (712)
+++|+..++++.+ +.|+. ..+..+..++...|++++|+..++++. .+.|+ ...+..++..+...|++++|...
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al---~l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECL---KLDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999999 56754 567788889999999999999999998 44674 33444455567778999999999
Q ss_pred HHhCC-C-CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 611 INSMP-F-EPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 611 ~~~~~-~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
+++.. . .|+ +..+..+..++...|+.++|...++++....|++......++..|...| ++|...++++.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 98872 2 354 4445666667889999999999999998888988888889999999888 4888888887764
No 86
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.16 E-value=7.9e-10 Score=99.19 Aligned_cols=236 Identities=11% Similarity=0.066 Sum_probs=173.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC
Q 005136 421 AIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSG 500 (712)
Q Consensus 421 ~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 500 (712)
.+.++|.+.|-+.+|...|+..+.. .|-+.||..+-.+|.+..++..|..++.+-.+. ++.++.......+.+...+
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHH
Confidence 3555556666666667777766664 455566777777777777777777777766554 3445555556667777788
Q ss_pred ChHHHHHHhccCCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHh
Q 005136 501 DIESSRRVFDRMPDK---NEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNS 577 (712)
Q Consensus 501 ~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 577 (712)
+.++|.++++...+. ++....++...|.-.++++-|+..++++.+.|+ -+...|+.+.-+|.-.++++-++.-|++
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 888888888887643 455555666778888999999999999999875 3556777888888888999999988888
Q ss_pred cchhcCCCC--chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 005136 578 MEPIYNIKP--NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH 653 (712)
Q Consensus 578 ~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 653 (712)
.. .....| -..+|..++...+..|++.-|.+.|+-. ...|+ ...++++.-.-.+.|+.++|..++..+..+.|+-
T Consensus 384 Al-stat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 384 AL-STATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred HH-hhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 76 223344 3668888999999999999999998876 33443 6777888777889999999999999999888885
Q ss_pred CchHHHHH
Q 005136 654 PAGYVLLS 661 (712)
Q Consensus 654 ~~~~~~l~ 661 (712)
.+....|+
T Consensus 463 ~E~~~Nl~ 470 (478)
T KOG1129|consen 463 AEVTTNLQ 470 (478)
T ss_pred ccccccee
Confidence 55444443
No 87
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.13 E-value=9.4e-09 Score=96.67 Aligned_cols=198 Identities=15% Similarity=0.190 Sum_probs=110.9
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 005136 417 VSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTY 496 (712)
Q Consensus 417 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 496 (712)
..+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+.+..+..
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------------- 95 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--------------- 95 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------------
Confidence 345556666666666666666666665532 2223344444444555555555555554444332
Q ss_pred HhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHH
Q 005136 497 AKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYF 575 (712)
Q Consensus 497 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 575 (712)
+.+...+..+...+...|++++|.+.+++.......| ....+..+..++...|++++|...+
T Consensus 96 -----------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (234)
T TIGR02521 96 -----------------PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL 158 (234)
T ss_pred -----------------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1222344455555666666666666666665532222 2234555566666677777777777
Q ss_pred HhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC
Q 005136 576 NSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PF-EPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLA 650 (712)
Q Consensus 576 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 650 (712)
++... ..| +...+..++..+...|++++|...+++. .. ..+...+......+...|+.++|..+.+.+....
T Consensus 159 ~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 159 TRALQ---IDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHH---hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 76652 233 4556666777777777777777777665 22 2234444455555666777777777766655443
No 88
>PF13041 PPR_2: PPR repeat family
Probab=99.13 E-value=1.7e-10 Score=76.71 Aligned_cols=50 Identities=24% Similarity=0.478 Sum_probs=45.7
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 005136 414 RNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASAS 463 (712)
Q Consensus 414 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~ 463 (712)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888999999999999999999999999999999999999999999875
No 89
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=2.3e-07 Score=82.64 Aligned_cols=387 Identities=11% Similarity=0.050 Sum_probs=225.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHH-HHHHHHH
Q 005136 284 WSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISN-ALIDLYS 362 (712)
Q Consensus 284 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~ 362 (712)
+.+.+..+.+..++++|++++..-.+.. +.+....+.+..+|....++..|...++++-... |...-|. --...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHH
Confidence 4445555556666666666666554422 1244555566666666666666666666665432 3222222 1233445
Q ss_pred hcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCC-CCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 005136 363 KCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMP-KRNDVSWSAIISGYLEHKQFDLVFAVFNE 441 (712)
Q Consensus 363 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 441 (712)
+.+.+..|+.+...|.+..--.......-....-..+++..+..++++.+ +.+..+.+.......+.|+++.|.+-|+.
T Consensus 90 ~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred HhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHH
Confidence 56667777777766655421111111111222345677777777887777 35666777777777788888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCC-------------Cchh---------------hHHHHH
Q 005136 442 MLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFP-------------YDVF---------------LGTALT 493 (712)
Q Consensus 442 ~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~---------------~~~~l~ 493 (712)
..+-|---....|+..+ +..+.++++.|.++..+++++|+. ||.. .++.-.
T Consensus 170 AlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa 248 (459)
T KOG4340|consen 170 ALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA 248 (459)
T ss_pred HHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence 77654333345565444 455678888888888888876543 1111 122222
Q ss_pred HHHHhcCChHHHHHHhccCCC-----CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCc
Q 005136 494 DTYAKSGDIESSRRVFDRMPD-----KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGL 567 (712)
Q Consensus 494 ~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 567 (712)
..+.+.|+++.|.+.+..|+. .|+++...+.-.- ..+++.+..+-+.-+... .| ...||..++-.|++..-
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~--nPfP~ETFANlLllyCKNey 325 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ--NPFPPETFANLLLLYCKNEY 325 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc--CCCChHHHHHHHHHHhhhHH
Confidence 345678999999999999984 4777766654332 235566666666666664 44 44788899999999999
Q ss_pred HHHHHHHHHhcchhcCCCC-chHHHHHHHHHhh-hcCChHHHHHHHHhCCCCCCHHHHHHHHHH-HhhcCCH----HHHH
Q 005136 568 VDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLS-RSGRLSEAEDFINSMPFEPDSNAWASLLSG-CKTYKNE----QIAE 640 (712)
Q Consensus 568 ~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~----~~a~ 640 (712)
++.|-.++.+-. +.-..- +...|+ |.+++. -.-..++|.+-+..+...-........+.. -.+..+- ..+.
T Consensus 326 f~lAADvLAEn~-~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai 403 (459)
T KOG4340|consen 326 FDLAADVLAENA-HLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAV 403 (459)
T ss_pred HhHHHHHHhhCc-chhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 999999887643 111111 333333 333333 344567776666554210000000111111 1112221 2233
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 641 RAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 641 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
+-++..+++. -.+.+..+|.|++..++.-+.+.|.+-.+
T Consensus 404 ~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 404 NEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 3444444443 24788899999999999999999987655
No 90
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.12 E-value=4.7e-08 Score=97.99 Aligned_cols=208 Identities=19% Similarity=0.274 Sum_probs=121.2
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCC-------C-C---hhHHHHHHHHHHccCChHHHHHHhhhCCCCCcccHHHHHHHHH
Q 005136 92 CMINANIQWGNLEEAQRLFDGMPE-------R-N---EVSWTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFV 160 (712)
Q Consensus 92 ~l~~~~~~~g~~~~A~~~~~~~~~-------~-~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~ 160 (712)
.+...|...+++.+|..+|+++.. + + ..+++.|...|.+.|++++|..++++
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~----------------- 308 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCER----------------- 308 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHH-----------------
Confidence 345566666777777777665542 1 2 23556666677777777777776554
Q ss_pred hcCChhHHHHHHHHHHHcCCC-CCH-hhHHHHHHHHhcccchHHHHHHHHHHHHhC---CCC----CccHHHHHHHHHHc
Q 005136 161 QNGFSFEALKLFLKLLESGVK-PNE-VTFSSICKACAEINDFRLGLSVFGLIFKAG---FEK----HVSVCNSLITLSLK 231 (712)
Q Consensus 161 ~~g~~~~A~~~~~~m~~~g~~-p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~li~~~~~ 231 (712)
|.++++.. .|.. |.. ..++.++..|...+++++|..+++...+.- +.+ ...+++.|...|..
T Consensus 309 -------Al~I~~~~--~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~ 379 (508)
T KOG1840|consen 309 -------ALEIYEKL--LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLK 379 (508)
T ss_pred -------HHHHHHHh--hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH
Confidence 55555552 1222 222 234556666777778888877777654421 112 23466667777777
Q ss_pred cCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCC----ceeHHHHHHHHHhcCChhHHHHHHHHH
Q 005136 232 MGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERN----EVSWSVMIARYNQSGYPEEAFRLFRQM 307 (712)
Q Consensus 232 ~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m 307 (712)
.|++++|.+++++ |+...++..... ...++.|...|.+.+++++|.++|.+.
T Consensus 380 ~gk~~ea~~~~k~------------------------ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 380 MGKYKEAEELYKK------------------------AIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred hcchhHHHHHHHH------------------------HHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 7777777777662 333333332211 124556666677777777777777665
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhh
Q 005136 308 TRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIV 378 (712)
Q Consensus 308 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 378 (712)
.... ..| ..+.+....+|..|...|...|+++.|.++.+.+.
T Consensus 436 ~~i~------------~~~-----------------g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 436 KDIM------------KLC-----------------GPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHH------------HHh-----------------CCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4310 011 01122235677888888888888888888877765
No 91
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.11 E-value=8e-08 Score=87.23 Aligned_cols=200 Identities=15% Similarity=0.122 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHH---HHHHHH
Q 005136 351 VFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSA---IISGYL 427 (712)
Q Consensus 351 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---l~~~~~ 427 (712)
+.-..-+...+...|++..|+..|....+.++.+..++..-...|...|+...|+.-+.++.+-.+..+.+ -...+.
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhh
Confidence 33344556667777788888888887777776555555555556666777766666666655433322222 234567
Q ss_pred hcCChhHHHHHHHHHHHCCCCCC--H------------HHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHH
Q 005136 428 EHKQFDLVFAVFNEMLLSGEIPN--K------------STFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALT 493 (712)
Q Consensus 428 ~~~~~~~a~~~~~~~~~~g~~p~--~------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 493 (712)
+.|.++.|..=|+..++.....+ . ......+..+.-.|+...++..+..+.+.. +-+...+..-.
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Ra 196 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARA 196 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHH
Confidence 77888888888887776532111 0 112223444556677777777777777642 44666777777
Q ss_pred HHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 005136 494 DTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNEL 553 (712)
Q Consensus 494 ~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 553 (712)
.+|...|++..|+.-++... ..+....-.+...+...|+.+.++...++..+ +.||..
T Consensus 197 kc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK 257 (504)
T KOG0624|consen 197 KCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHK 257 (504)
T ss_pred HHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchh
Confidence 77777888777766555443 34555555666677777777777777777777 566653
No 92
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.07 E-value=4e-08 Score=84.44 Aligned_cols=197 Identities=12% Similarity=0.099 Sum_probs=128.9
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcC
Q 005136 455 SSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESG 531 (712)
Q Consensus 455 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~ 531 (712)
..+.-.|...|++..|..-+++..+.. +.+..++..+...|.+.|+.+.|.+.|+... ..+-.+.|.....+|..|
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence 334445556666666666666655543 3445556666666777777777777776654 234456667777777777
Q ss_pred ChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHH
Q 005136 532 YAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAED 609 (712)
Q Consensus 532 ~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 609 (712)
++++|...|++......-| -..+|..+.-+..+.|+.+.|..+|++.. ...| .+.....+.+.+...|++..|..
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL---~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRAL---ELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHH---HhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 7777777777777643333 23567777777777777777777777776 3355 45666777777777777777777
Q ss_pred HHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCc
Q 005136 610 FINSM--PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPA 655 (712)
Q Consensus 610 ~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 655 (712)
++++. ...+....+...+..-...||.+.+.++-.++....|.+++
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 77776 23456666655555666777777777777777777777654
No 93
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=2e-07 Score=83.03 Aligned_cols=201 Identities=18% Similarity=0.170 Sum_probs=116.1
Q ss_pred hcCCHHHHHHHHhhCC-CCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHH
Q 005136 262 EMGDLGEARRIFDEMP-ERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHA 340 (712)
Q Consensus 262 ~~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 340 (712)
..+++..+..+.++.. +.+..+.+...-...+.|+++.|++-|+...+-+--.....|+..+. ..+.++++.|++...
T Consensus 124 se~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iS 202 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHIS 202 (459)
T ss_pred ccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHH
Confidence 4456666666666666 34555555555555677888888888888776544444556666554 345577888888888
Q ss_pred HHHHcCCCCcHHH----HHHHHHHHHhcCCh-HHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCC-
Q 005136 341 HVLKIGIEKDVFI----SNALIDLYSKCGET-KDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKR- 414 (712)
Q Consensus 341 ~~~~~~~~~~~~~----~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 414 (712)
+++++|+...+.. .+..+++-. .|+. ..+..- -+.++|.-...+.+.++.+.|.+.+..|+.+
T Consensus 203 EIieRG~r~HPElgIGm~tegiDvrs-vgNt~~lh~Sa----------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRa 271 (459)
T KOG4340|consen 203 EIIERGIRQHPELGIGMTTEGIDVRS-VGNTLVLHQSA----------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRA 271 (459)
T ss_pred HHHHhhhhcCCccCccceeccCchhc-ccchHHHHHHH----------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcc
Confidence 8887765432211 000111000 0000 000000 0334555556667788888888888888743
Q ss_pred ----CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHH
Q 005136 415 ----NDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGK 476 (712)
Q Consensus 415 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 476 (712)
|++|...+.-.-. .+++....+-++-++..+ +-...||..++-.||+..-++.|-.++.+
T Consensus 272 E~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 272 EEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred cccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 6666665543322 233444444455555443 23456788888888888888877777665
No 94
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.03 E-value=8.5e-08 Score=92.37 Aligned_cols=228 Identities=11% Similarity=0.011 Sum_probs=146.7
Q ss_pred hHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHh
Q 005136 433 DLVFAVFNEMLLSG-EIPN--KSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVF 509 (712)
Q Consensus 433 ~~a~~~~~~~~~~g-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 509 (712)
+.++.-+.+++... ..|+ ...|......+...|+.+.|...+.+..+.. +.+...+..+...+...|++++|...|
T Consensus 43 e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 121 (296)
T PRK11189 43 EVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAF 121 (296)
T ss_pred HHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 33355555555432 1222 2345555556667777777777777776653 445677788888888888888888888
Q ss_pred ccCCC--C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC
Q 005136 510 DRMPD--K-NEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP 586 (712)
Q Consensus 510 ~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 586 (712)
+...+ | +...|..+..++...|++++|++.+++..+ ..|+..........+...++.++|...|++... ...|
T Consensus 122 ~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~~~ 197 (296)
T PRK11189 122 DSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KLDK 197 (296)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCCc
Confidence 88753 3 445777788888999999999999999988 566654322222334556789999999976542 2233
Q ss_pred chHHHHHHHHHhhhcCChHH--HHHHHHhC-CCC----C-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC-CCCchH
Q 005136 587 NGRHYTCVVDMLSRSGRLSE--AEDFINSM-PFE----P-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAE-EHPAGY 657 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~--A~~~~~~~-~~~----p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p-~~~~~~ 657 (712)
+...+ .+. +...|+..+ +.+.+.+. ... | ....|..+...+...|++++|+..++++++.+| +..+.-
T Consensus 198 ~~~~~-~~~--~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~ 274 (296)
T PRK11189 198 EQWGW-NIV--EFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHR 274 (296)
T ss_pred cccHH-HHH--HHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 32222 223 233455433 33333322 211 2 245788888889999999999999999999997 555555
Q ss_pred HHHHHHHHhcC
Q 005136 658 VLLSNIYASAG 668 (712)
Q Consensus 658 ~~l~~~~~~~g 668 (712)
..++......+
T Consensus 275 ~~~~e~~~~~~ 285 (296)
T PRK11189 275 YALLELALLGQ 285 (296)
T ss_pred HHHHHHHHHHh
Confidence 55555544433
No 95
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=2.7e-07 Score=89.43 Aligned_cols=408 Identities=13% Similarity=0.125 Sum_probs=254.9
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC---CCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCh
Q 005136 257 LDVFIEMGDLGEARRIFDEMPE---RNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPN-TSCFSIVLSALASLKAL 332 (712)
Q Consensus 257 l~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~ 332 (712)
.+..+..|+++.|+.+|.+... +|.+.|..=..+|...|++++|++=-.+-++ +.|+ ...|+....++.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccH
Confidence 3566789999999999988764 5667788888999999999999887766665 5565 56899999999999999
Q ss_pred hhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHH---HHHHHhhhcCC----CCceeeHHHHHHHHh---------
Q 005136 333 RSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDG---RLVFDSIVEKD----VAHVVSWNSMIGGYG--------- 396 (712)
Q Consensus 333 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A---~~~~~~~~~~~----~~~~~~~~~l~~~~~--------- 396 (712)
++|+..|.+-++.. +.+...++.+..++.......+. -.++..+.... .-....|..++..+-
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999999887763 33567778888877221000000 00111111000 001122222322221
Q ss_pred -ccCChhhHHHHhhcC----------------CCC------------C----------cccHHHHHHHHHhcCChhHHHH
Q 005136 397 -LNGQMEEAKELFDNM----------------PKR------------N----------DVSWSAIISGYLEHKQFDLVFA 437 (712)
Q Consensus 397 -~~~~~~~a~~~~~~~----------------~~~------------~----------~~~~~~l~~~~~~~~~~~~a~~ 437 (712)
.-.++.++...+... ..| | ..-...++++..+..++..|++
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 111111221111111 011 0 1125667888888888999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCc------hhhHHHHHHHHHhcCChHHHHHHhcc
Q 005136 438 VFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYD------VFLGTALTDTYAKSGDIESSRRVFDR 511 (712)
Q Consensus 438 ~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 511 (712)
.+....... -+..-++....++...|.+......-....+.|...- ...+..+..+|.+.++++.+...|.+
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 988887754 4444455555677777777666655555544432211 11122234466667778888887777
Q ss_pred CCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chH
Q 005136 512 MPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNEL-TILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGR 589 (712)
Q Consensus 512 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~ 589 (712)
...+... -....+....+++++..+...- +.|... -...-...+.+.|++..|+..|.+++.. .| |..
T Consensus 324 aLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr---~P~Da~ 393 (539)
T KOG0548|consen 324 ALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR---DPEDAR 393 (539)
T ss_pred HhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc---CCchhH
Confidence 5421111 1112233445555555555444 445432 2223356677889999999999888733 57 788
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 005136 590 HYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASA 667 (712)
Q Consensus 590 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 667 (712)
.|...+-+|.+.|.+..|+.-.+.. ...|+ ...|..=..++....+++.|.+.|+++++.+|++..+...+..++..+
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 8889999999999999888877766 44554 445555566667778899999999999999999888888888888765
Q ss_pred CCchhHHHHHHH
Q 005136 668 GRWIDAMNVRKL 679 (712)
Q Consensus 668 g~~~eA~~~~~~ 679 (712)
...+...++.++
T Consensus 474 ~~~~~~ee~~~r 485 (539)
T KOG0548|consen 474 RGDETPEETKRR 485 (539)
T ss_pred hcCCCHHHHHHh
Confidence 444555555544
No 96
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.02 E-value=3.7e-08 Score=93.14 Aligned_cols=155 Identities=15% Similarity=0.198 Sum_probs=106.8
Q ss_pred HHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc----cCcHH
Q 005136 494 DTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSH----SGLVD 569 (712)
Q Consensus 494 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 569 (712)
.++...|++++|.+++... .+.......+..+.+.++++.|.+.++.|.+ +..|. +...+..++.. .+.+.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCchhHH
Confidence 4566778888888888775 4555666677888899999999999999887 44443 34444444432 34688
Q ss_pred HHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCH-HHHHHHHHHH
Q 005136 570 KGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNE-QIAERAVKNL 646 (712)
Q Consensus 570 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~-~~a~~~~~~~ 646 (712)
+|..+|+++.+ ...+++.+.+.++.++...|++++|.+++++. ...| ++.++.+++-+....|+. +.+.+++.++
T Consensus 185 ~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 185 DAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 88888888873 33457777888888888888888888888775 3334 366666776666666766 6677788888
Q ss_pred hccCCCCCc
Q 005136 647 WKLAEEHPA 655 (712)
Q Consensus 647 ~~~~p~~~~ 655 (712)
....|++|.
T Consensus 263 ~~~~p~h~~ 271 (290)
T PF04733_consen 263 KQSNPNHPL 271 (290)
T ss_dssp HHHTTTSHH
T ss_pred HHhCCCChH
Confidence 888888764
No 97
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=6.5e-07 Score=86.85 Aligned_cols=176 Identities=12% Similarity=0.063 Sum_probs=116.9
Q ss_pred HHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC--CCCcc-hHHHHHHHHHHcCCh
Q 005136 457 VLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP--DKNEI-SWTVMVRGLAESGYA 533 (712)
Q Consensus 457 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~-~~~~l~~~~~~~~~~ 533 (712)
+-.++.+.++++.+..++.+.......|+. ..+....+++........ .|... -...-...+.+.|++
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCH
Confidence 334666678889999999886654334332 223344455554444433 22221 122226678899999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHH
Q 005136 534 KESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFIN 612 (712)
Q Consensus 534 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 612 (712)
..|++.|.+++... +.|...|..-.-+|.+.|.+..|+.-.+... .+.| ....|..-+.++....++++|.+.|+
T Consensus 375 ~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~i---eL~p~~~kgy~RKg~al~~mk~ydkAleay~ 450 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCI---ELDPNFIKAYLRKGAALRAMKEYDKALEAYQ 450 (539)
T ss_pred HHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHH---hcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999953 3356789999999999999999999888887 3466 45667677778888889999999999
Q ss_pred hC-CCCCCHHHHHHHHHHHhhc-CCHHHHHHHHHH
Q 005136 613 SM-PFEPDSNAWASLLSGCKTY-KNEQIAERAVKN 645 (712)
Q Consensus 613 ~~-~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~ 645 (712)
+. ...|+..-+..-+.-|... .....-+++.++
T Consensus 451 eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 451 EALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 87 5567655444444444432 333334444454
No 98
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.98 E-value=3.8e-07 Score=92.82 Aligned_cols=307 Identities=12% Similarity=0.140 Sum_probs=143.7
Q ss_pred HHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhh
Q 005136 324 SALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEE 403 (712)
Q Consensus 324 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 403 (712)
..+...|++++|++.+..-... +.............+.+.|+.++|..+|..+.+.+|.+..-|..+..+..-.....
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~- 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLS- 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccc-
Confidence 3445667777777776553332 23334455566667777777777777777777777666666665555553322100
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCch-HHHHHHHHHHHHcCC
Q 005136 404 AKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASL-EKGKDLHGKIIKLGF 482 (712)
Q Consensus 404 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~ 482 (712)
..+.+...++|+++...- |.......+.-.+.....+ ..+..++..+.+.|+
T Consensus 90 -------------------------~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv 142 (517)
T PF12569_consen 90 -------------------------DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV 142 (517)
T ss_pred -------------------------cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 012233377777776643 4444444343333332222 234455555556664
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHH
Q 005136 483 PYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNE--LTILSVLF 560 (712)
Q Consensus 483 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~ 560 (712)
|+ +|..|-..|....+.+-..+++..... .+...+.+.... ....-.|+. .++..+..
T Consensus 143 Ps---lF~~lk~Ly~d~~K~~~i~~l~~~~~~-----------~l~~~~~~~~~~------~~~~~~p~~~lw~~~~lAq 202 (517)
T PF12569_consen 143 PS---LFSNLKPLYKDPEKAAIIESLVEEYVN-----------SLESNGSFSNGD------DEEKEPPSTLLWTLYFLAQ 202 (517)
T ss_pred ch---HHHHHHHHHcChhHHHHHHHHHHHHHH-----------hhcccCCCCCcc------ccccCCchHHHHHHHHHHH
Confidence 43 333344444433333322222222110 000000000000 000012222 12233344
Q ss_pred HhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhCC-CCCCHHHH-HHHHHHHhhcCCHH
Q 005136 561 ACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSMP-FEPDSNAW-ASLLSGCKTYKNEQ 637 (712)
Q Consensus 561 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~-~~l~~~~~~~g~~~ 637 (712)
.|...|++++|++++++.+ ...| .+..|..-+++|-+.|++.+|.+.++... ..+....+ ...+..+.+.|+.+
T Consensus 203 hyd~~g~~~~Al~~Id~aI---~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e 279 (517)
T PF12569_consen 203 HYDYLGDYEKALEYIDKAI---EHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIE 279 (517)
T ss_pred HHHHhCCHHHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHH
Confidence 4555566666666665555 2244 35555555556666666666666555552 22222222 22233345556666
Q ss_pred HHHHHHHHHhccC--CCC-------CchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 638 IAERAVKNLWKLA--EEH-------PAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 638 ~a~~~~~~~~~~~--p~~-------~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
+|+..+..-...+ |.. .+.....|.+|.+.|++..|+..+..+.+
T Consensus 280 ~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 280 EAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6665555543322 111 23444556667777777777666655443
No 99
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.97 E-value=8.4e-09 Score=97.49 Aligned_cols=243 Identities=12% Similarity=0.042 Sum_probs=154.7
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHH
Q 005136 427 LEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSR 506 (712)
Q Consensus 427 ~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 506 (712)
.-.|++..++.-.+ .....-..+......+.+++...|+++.+. .++.+.. .|.......+...+...++.+.+.
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 34455555554444 111111122333445556666666655432 3333322 555555555555444434555666
Q ss_pred HHhccCC-CC----CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchh
Q 005136 507 RVFDRMP-DK----NEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPI 581 (712)
Q Consensus 507 ~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 581 (712)
.-++... ++ +..........+...|++++|++++.+. .+.......+..+.+.++++.|.+.++.|.
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~-- 158 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ-- 158 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH--
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH--
Confidence 5555443 22 2222222334566789999999988642 455667778899999999999999999997
Q ss_pred cCCCCchHHHHHHHHHhh--h--cCChHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCc
Q 005136 582 YNIKPNGRHYTCVVDMLS--R--SGRLSEAEDFINSM--PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPA 655 (712)
Q Consensus 582 ~~~~p~~~~~~~l~~~~~--~--~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 655 (712)
.+..| .+...++.+++ . .+++.+|..+|+++ ...+++.+++.++.++...|++++|+..++++++.+|+++.
T Consensus 159 -~~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d 236 (290)
T PF04733_consen 159 -QIDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPD 236 (290)
T ss_dssp -CCSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHH
T ss_pred -hcCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHH
Confidence 33444 34444544443 2 34699999999998 34577888888888999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCc-hhHHHHHHHHHhCC
Q 005136 656 GYVLLSNIYASAGRW-IDAMNVRKLMTEKG 684 (712)
Q Consensus 656 ~~~~l~~~~~~~g~~-~eA~~~~~~~~~~~ 684 (712)
++..++.+....|+. +.+.+++.++....
T Consensus 237 ~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 237 TLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 999999999999998 56777888877643
No 100
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.91 E-value=6e-08 Score=86.54 Aligned_cols=150 Identities=9% Similarity=0.078 Sum_probs=115.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcC
Q 005136 524 VRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSG 602 (712)
Q Consensus 524 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 602 (712)
+..|...|+++.+....+.+.. |. ..+...++.++++..++...+ ..| +...|..++..|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~---~~P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCC
Confidence 3457778887776444332221 11 012235667777777777763 366 8889999999999999
Q ss_pred ChHHHHHHHHhC-CCCCC-HHHHHHHHHH-HhhcCC--HHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHH
Q 005136 603 RLSEAEDFINSM-PFEPD-SNAWASLLSG-CKTYKN--EQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVR 677 (712)
Q Consensus 603 ~~~~A~~~~~~~-~~~p~-~~~~~~l~~~-~~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~ 677 (712)
++++|...+++. ...|+ ...+..+..+ +...|+ .++|.++++++++.+|+++.++..|+..+.+.|++++|+..|
T Consensus 88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999988 55564 6666677665 467777 599999999999999999999999999999999999999999
Q ss_pred HHHHhCCCccC
Q 005136 678 KLMTEKGLRKS 688 (712)
Q Consensus 678 ~~~~~~~~~~~ 688 (712)
+++++...+.+
T Consensus 168 ~~aL~l~~~~~ 178 (198)
T PRK10370 168 QKVLDLNSPRV 178 (198)
T ss_pred HHHHhhCCCCc
Confidence 99998765443
No 101
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.91 E-value=3.6e-08 Score=96.13 Aligned_cols=214 Identities=12% Similarity=0.083 Sum_probs=147.9
Q ss_pred ccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCC---CcchHHHHHHHHHHcCChHHHHHH
Q 005136 463 SVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDK---NEISWTVMVRGLAESGYAKESINL 539 (712)
Q Consensus 463 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~ 539 (712)
+.|++.+|.-.|+..++.. |-+...|..|.......++-..|+..+++..+. +......|...|...|.-..|++.
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3444444444444444332 334445555555555555555566666555432 334455556666666766777777
Q ss_pred HHHHHHcCCCCCHHHHHHHH-----------HHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHH
Q 005136 540 FEEMEKTSITPNELTILSVL-----------FACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAE 608 (712)
Q Consensus 540 ~~~~~~~~~~p~~~~~~~l~-----------~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 608 (712)
++.-+... |... .+. ..+..........++|-++....+..+|+.+...|+-.|.-.|.+++|+
T Consensus 376 L~~Wi~~~--p~y~---~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 376 LDKWIRNK--PKYV---HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHhC--ccch---hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 76655421 1100 000 1223333455566666666655566678999999999999999999999
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 609 DFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 609 ~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
+.|+.+ ..+|+ ...|+.+...+....+.++|+..|++++++.|....+.+.||..|...|.|.||.++|=..+.
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999987 66775 677888888898899999999999999999999999999999999999999999999887665
No 102
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.89 E-value=3.5e-06 Score=84.79 Aligned_cols=195 Identities=10% Similarity=0.027 Sum_probs=108.3
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHhc
Q 005136 490 TALTDTYAKSGDIESSRRVFDRMPD---KNEISWTVMVRGLAESGYAKESINLFEEMEKTSI-TPNE--LTILSVLFACS 563 (712)
Q Consensus 490 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~~--~~~~~l~~~~~ 563 (712)
..+...+...|++++|...+++..+ .+...+..+...+...|++++|+..+++...... .|+. ..+..+...+.
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 3444556667777777777666552 2344566666677777777777777777665321 1222 23445666677
Q ss_pred ccCcHHHHHHHHHhcchhcCCCCchHHH-H--HHHHHhhhcCChHHHHH------HHHhC-CCCCCHHHHHHHHHHHhhc
Q 005136 564 HSGLVDKGLKYFNSMEPIYNIKPNGRHY-T--CVVDMLSRSGRLSEAED------FINSM-PFEPDSNAWASLLSGCKTY 633 (712)
Q Consensus 564 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g~~~~A~~------~~~~~-~~~p~~~~~~~l~~~~~~~ 633 (712)
..|++++|..++++........+..... + .+...+...|....+.. ..... ..............++...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 7777777777777764211111111111 1 22222233332222222 11111 1101111122345556778
Q ss_pred CCHHHHHHHHHHHhccC-C--------CCCchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 634 KNEQIAERAVKNLWKLA-E--------EHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 634 g~~~~a~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
|+.+.|...++.+.... . .........+.++.+.|++++|.+.+...+...
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 88888888887775422 1 134566778888899999999999999887654
No 103
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.87 E-value=1.1e-07 Score=88.99 Aligned_cols=180 Identities=12% Similarity=0.010 Sum_probs=107.9
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHhccCCC--CC-c---chHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH----H
Q 005136 485 DVFLGTALTDTYAKSGDIESSRRVFDRMPD--KN-E---ISWTVMVRGLAESGYAKESINLFEEMEKTSITPNEL----T 554 (712)
Q Consensus 485 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~----~ 554 (712)
....+..+...+...|++++|...|+++.+ |+ + ..+..+..++...|++++|+..++++.+ ..|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHHH
Confidence 344555555666666667666666665542 21 1 2345556666666666666666666665 233221 2
Q ss_pred HHHHHHHhccc--------CcHHHHHHHHHhcchhcCCCCc-hHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHH
Q 005136 555 ILSVLFACSHS--------GLVDKGLKYFNSMEPIYNIKPN-GRHYTCVVDMLSRSGRLSEAEDFINSMPFEPDSNAWAS 625 (712)
Q Consensus 555 ~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 625 (712)
+..+..++... |+++.|.+.|+.+... .|+ ......+..... ..... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHHH
Confidence 33344444433 5566666666666522 332 122211111100 00000 001124
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 626 LLSGCKTYKNEQIAERAVKNLWKLAEEHP---AGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 626 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
+...+...|++++|...++++++..|+++ .++..++.++...|++++|..+++.+....
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45568899999999999999999987754 789999999999999999999999887653
No 104
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.78 E-value=0.00032 Score=72.97 Aligned_cols=157 Identities=15% Similarity=0.093 Sum_probs=80.2
Q ss_pred HHHHHHHHHHcCChH---HHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHH
Q 005136 520 WTVMVRGLAESGYAK---ESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVV 595 (712)
Q Consensus 520 ~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 595 (712)
-+.|+..+.+.++.. +|+-+++.... ..| |..+-..++..|+-.|-...|.+.|+.+.-+ .+..|.-.| .+.
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt--~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh-~~~ 514 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLT--KSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGH-LIF 514 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhh--cCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchH-HHH
Confidence 455666777776654 44445554444 233 3344456677777778888888888776522 333332222 223
Q ss_pred HHhhhcCChHHHHHHHHhC-CC-CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC----CCchHHHHHHHHHhcC
Q 005136 596 DMLSRSGRLSEAEDFINSM-PF-EPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEE----HPAGYVLLSNIYASAG 668 (712)
Q Consensus 596 ~~~~~~g~~~~A~~~~~~~-~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g 668 (712)
..+...|++..+...++.. .. ..+ ..+-. ++....+.|.+..-.++..---.+.-. -..+-......+...+
T Consensus 515 ~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~e-yI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~ 593 (932)
T KOG2053|consen 515 RRAETSGRSSFASNTFNEHLKFYDSSLKETPE-YIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNAD 593 (932)
T ss_pred HHHHhcccchhHHHHHHHHHHHHhhhhhhhHH-HHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3445566777776666654 11 111 11111 222233566666655544322222211 1223344555566677
Q ss_pred CchhHHHHHHHHH
Q 005136 669 RWIDAMNVRKLMT 681 (712)
Q Consensus 669 ~~~eA~~~~~~~~ 681 (712)
+..+-...+..|.
T Consensus 594 ~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 594 RGTQLLKLLESMK 606 (932)
T ss_pred cHHHHHHHHhccc
Confidence 7766666665554
No 105
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.76 E-value=1.4e-07 Score=79.59 Aligned_cols=94 Identities=14% Similarity=-0.060 Sum_probs=59.8
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 005136 591 YTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAG 668 (712)
Q Consensus 591 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 668 (712)
+..++..+...|++++|...|+.. ...| +...+..+..++...|++++|...++++++++|+++.++..++.++...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 444566666666666666666665 3333 35555666666666666666666666666666666666666666666666
Q ss_pred CchhHHHHHHHHHhCC
Q 005136 669 RWIDAMNVRKLMTEKG 684 (712)
Q Consensus 669 ~~~eA~~~~~~~~~~~ 684 (712)
++++|+..+++.++..
T Consensus 107 ~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 107 EPGLAREAFQTAIKMS 122 (144)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 6666666666666543
No 106
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.73 E-value=1.7e-07 Score=78.99 Aligned_cols=122 Identities=11% Similarity=0.107 Sum_probs=101.5
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-C
Q 005136 538 NLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-P 615 (712)
Q Consensus 538 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 615 (712)
.++++.++ +.|+. +..+..++...|++++|...|+.+. ...| +...+..++.++.+.|++++|...|++. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45666666 55664 4456777888999999999999987 4567 7888999999999999999999999998 4
Q ss_pred CCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 005136 616 FEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYAS 666 (712)
Q Consensus 616 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 666 (712)
..| +...+..+..++...|+.++|+..++++++..|+++..+...+.+...
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 445 577888888889999999999999999999999999999888877654
No 107
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.71 E-value=2e-05 Score=72.14 Aligned_cols=309 Identities=10% Similarity=0.042 Sum_probs=191.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHH-HHHHHHHH
Q 005136 284 WSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNT-SCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFI-SNALIDLY 361 (712)
Q Consensus 284 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~ 361 (712)
.--+...+...|++.+|+.-|...++ ..|+. .++..-...|...|+...|+.-+..+++. +||... ...-...+
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve--~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVE--GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHc--CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 34455666777778888887777766 23332 23333334555566666666666666654 354322 12223456
Q ss_pred HhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 005136 362 SKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNE 441 (712)
Q Consensus 362 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 441 (712)
.+.|.++.|..-|+.+.+.++.+... ..+..+..-.++-+ .....+..+...|+...|+.....
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~----~eaqskl~~~~e~~------------~l~~ql~s~~~~GD~~~ai~~i~~ 180 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLV----LEAQSKLALIQEHW------------VLVQQLKSASGSGDCQNAIEMITH 180 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchh----HHHHHHHHhHHHHH------------HHHHHHHHHhcCCchhhHHHHHHH
Confidence 77777777777777777666421111 11111111111111 122334556667788888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCcc---
Q 005136 442 MLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEI--- 518 (712)
Q Consensus 442 ~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--- 518 (712)
+++-. +.|...+..-..+|...|++..|+.=+...-+.. ..+...+..+...+...|+.+.++...++..+-|+.
T Consensus 181 llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~ 258 (504)
T KOG0624|consen 181 LLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKL 258 (504)
T ss_pred HHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhh
Confidence 87752 4466666667778888888888887777666553 334455556677778888888888888877754332
Q ss_pred ---hHHHH---------HHHHHHcCChHHHHHHHHHHHHcCCCCC--HHH---HHHHHHHhcccCcHHHHHHHHHhcchh
Q 005136 519 ---SWTVM---------VRGLAESGYAKESINLFEEMEKTSITPN--ELT---ILSVLFACSHSGLVDKGLKYFNSMEPI 581 (712)
Q Consensus 519 ---~~~~l---------~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~ 581 (712)
.|..+ +......++|.++++..+...+. .|. ... +..+-.++...|++.+|++...++.
T Consensus 259 Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL-- 334 (504)
T KOG0624|consen 259 CFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL-- 334 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccCCHHHHHHHHHHHH--
Confidence 12111 12345667788888888877774 343 222 3344556667788888888888887
Q ss_pred cCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC
Q 005136 582 YNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD 619 (712)
Q Consensus 582 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 619 (712)
.+.| |+.++..-+.+|.-...+++|+.-|++. ...++
T Consensus 335 -~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 335 -DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred -hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcc
Confidence 4577 5888888888888888888888888887 33443
No 108
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.70 E-value=3.3e-05 Score=77.75 Aligned_cols=188 Identities=12% Similarity=0.114 Sum_probs=86.9
Q ss_pred HHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCC-----Cc--chHHHHHHHHHHcCC
Q 005136 460 ASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDK-----NE--ISWTVMVRGLAESGY 532 (712)
Q Consensus 460 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~l~~~~~~~~~ 532 (712)
.+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+. +. ..|..+...+...|+
T Consensus 123 ~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~ 201 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGD 201 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCC
Confidence 3334444444444444444332 222334444555555555555555555554421 11 123345556666677
Q ss_pred hHHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHhcccCcHHHHHHH---HHhcchh-cCCCCchHHHHHHHHHhhhcCCh
Q 005136 533 AKESINLFEEMEKTSI-TPNELTI-L--SVLFACSHSGLVDKGLKY---FNSMEPI-YNIKPNGRHYTCVVDMLSRSGRL 604 (712)
Q Consensus 533 ~~~A~~~~~~~~~~~~-~p~~~~~-~--~l~~~~~~~g~~~~a~~~---~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~ 604 (712)
+++|..++++...... .+..... . .++.-+...|....+.+. ....... .+ ..........+.++...|+.
T Consensus 202 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~ 280 (355)
T cd05804 202 YEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPD-HGLAFNDLHAALALAGAGDK 280 (355)
T ss_pred HHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCc-ccchHHHHHHHHHHhcCCCH
Confidence 7777777766643211 1111111 1 122222223322222111 1111100 01 11112223566677788888
Q ss_pred HHHHHHHHhCCC--CC---C----HHHHHHH--HHHHhhcCCHHHHHHHHHHHhcc
Q 005136 605 SEAEDFINSMPF--EP---D----SNAWASL--LSGCKTYKNEQIAERAVKNLWKL 649 (712)
Q Consensus 605 ~~A~~~~~~~~~--~p---~----~~~~~~l--~~~~~~~g~~~~a~~~~~~~~~~ 649 (712)
++|...++.+.. .. . ..+...+ ..++...|+.++|.+.+..++..
T Consensus 281 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 281 DALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888877621 11 1 1111222 22367889999999988888764
No 109
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.66 E-value=1.9e-06 Score=84.54 Aligned_cols=256 Identities=15% Similarity=0.151 Sum_probs=144.8
Q ss_pred HHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 005136 360 LYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVF 439 (712)
Q Consensus 360 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 439 (712)
-+.+.|++.+|.-.|+.....+|.+..+|..|......+++-..| +..+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~a-------------------------------i~AL 342 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNA-------------------------------ISAL 342 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHH-------------------------------HHHH
Confidence 356677788888888888877777777777777777777766666 6666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCcch
Q 005136 440 NEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEIS 519 (712)
Q Consensus 440 ~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 519 (712)
++.++.. +-|......|.-.|...|.-..|...+..-++...+--. +.. -...++++.- ... .+.
T Consensus 343 ~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~-----l~~-a~~~~~~~~~----~s~--~~~-- 407 (579)
T KOG1125|consen 343 RRCLELD-PTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVH-----LVS-AGENEDFENT----KSF--LDS-- 407 (579)
T ss_pred HHHHhcC-CccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchh-----ccc-cCccccccCC----cCC--CCH--
Confidence 6665542 223445555555666666666666666555443211000 000 0000000000 000 000
Q ss_pred HHHHHHHHHHcCChHHHHHHH-HHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHH
Q 005136 520 WTVMVRGLAESGYAKESINLF-EEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDM 597 (712)
Q Consensus 520 ~~~l~~~~~~~~~~~~A~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 597 (712)
.......++| +.....+..+|......|.-.|--.|++++|++.|+.+. ..+| |...|+.|+..
T Consensus 408 -----------~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL---~v~Pnd~~lWNRLGAt 473 (579)
T KOG1125|consen 408 -----------SHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAAL---QVKPNDYLLWNRLGAT 473 (579)
T ss_pred -----------HHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHH---hcCCchHHHHHHhhHH
Confidence 0111222222 333344433555555566666667777777777777776 3466 66677777777
Q ss_pred hhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC----------CchHHHHHHHHH
Q 005136 598 LSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH----------PAGYVLLSNIYA 665 (712)
Q Consensus 598 ~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----------~~~~~~l~~~~~ 665 (712)
+....+.++|+..|++. .++|. ...+..+.-.|+..|.+++|...+-.++.+.+.+ -.++.+|=.++.
T Consensus 474 LAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als 553 (579)
T KOG1125|consen 474 LANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALS 553 (579)
T ss_pred hcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHH
Confidence 77777777777777776 56676 3344555556777777777777777777654441 135555555555
Q ss_pred hcCCchhHHH
Q 005136 666 SAGRWIDAMN 675 (712)
Q Consensus 666 ~~g~~~eA~~ 675 (712)
-.++.+-+.+
T Consensus 554 ~~~~~D~l~~ 563 (579)
T KOG1125|consen 554 AMNRSDLLQE 563 (579)
T ss_pred HcCCchHHHH
Confidence 5555543333
No 110
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.64 E-value=2.3e-05 Score=89.71 Aligned_cols=54 Identities=20% Similarity=0.138 Sum_probs=25.3
Q ss_pred HHhhcCCHHHHHHHHHHHhccCC------CCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 629 GCKTYKNEQIAERAVKNLWKLAE------EHPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 629 ~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
++...|+.++|...++++..... +...++..++.++.+.|+.++|...+.+.++
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555555544211 1122344455555555555555555555444
No 111
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.63 E-value=2e-06 Score=92.54 Aligned_cols=201 Identities=12% Similarity=0.105 Sum_probs=161.2
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHhccCCCC--------CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 005136 483 PYDVFLGTALTDTYAKSGDIESSRRVFDRMPDK--------NEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELT 554 (712)
Q Consensus 483 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~ 554 (712)
|.+...|-..+......++.+.|+++.+++.+. -...|.++++.....|.-+...++|+++.+ .......
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq--ycd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ--YCDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH--hcchHHH
Confidence 445556667777777888899988888877631 234688888888888888888999999887 4455567
Q ss_pred HHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHH
Q 005136 555 ILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD---SNAWASLLSGC 630 (712)
Q Consensus 555 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~ 630 (712)
|..|...|.+.+.+++|.++++.|.++++ .....|...+..+.+.++-+.|..++++. ..-|. ...+...+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88888999999999999999999987666 45678888899999999989999998876 33443 44455566667
Q ss_pred hhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCcc
Q 005136 631 KTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLRK 687 (712)
Q Consensus 631 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~ 687 (712)
.+.||.+.+..+|+-.+..+|.....|.-++..-.+.|..+.++.+|++++..++++
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 789999999999999999999999999999999999999999999999998877654
No 112
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.62 E-value=0.00071 Score=66.37 Aligned_cols=128 Identities=12% Similarity=0.095 Sum_probs=88.1
Q ss_pred CCCCchhhHHHHHHHhhccchhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHHHHhhc--CCCCcchHHHH
Q 005136 16 SFNSYIETCLCLLKDITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVKDL--NGFDLVVHNCM 93 (712)
Q Consensus 16 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~l 93 (712)
..|-|+.+|..||+-+-.+ ..++++..++++.+.-+ .....|..-+....+..+++...++|.+. .-.+...|..-
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP-~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lY 92 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFP-SSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLY 92 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCC-CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 4578999999999988777 89999999999997754 47778888899999999999999999986 34667778777
Q ss_pred HHHHHh-cCChHHHHHH----HhhCC-----C-CChhHHHHHHHH---------HHccCChHHHHHHhhhCC
Q 005136 94 INANIQ-WGNLEEAQRL----FDGMP-----E-RNEVSWTALISG---------FMKHGRVEESMWYFERNP 145 (712)
Q Consensus 94 ~~~~~~-~g~~~~A~~~----~~~~~-----~-~~~~~~~~l~~~---------~~~~g~~~~a~~~~~~~~ 145 (712)
+.--.+ .|...++... |+-.. + ..-..|+..+.. |..+.+++..++.++++.
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral 164 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRAL 164 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHh
Confidence 765443 3444332221 11111 1 233455555544 334446677777777754
No 113
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.58 E-value=6.8e-07 Score=73.51 Aligned_cols=97 Identities=12% Similarity=0.057 Sum_probs=87.6
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIY 664 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 664 (712)
+......++..+...|++++|.++|+-+ ...|. ...|..+..+|...|++++|+..|.++..++|++|..+.+++.++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 5666778888889999999999999988 45564 677888888899999999999999999999999999999999999
Q ss_pred HhcCCchhHHHHHHHHHhC
Q 005136 665 ASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 665 ~~~g~~~eA~~~~~~~~~~ 683 (712)
...|+.++|++.|+..+..
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 114
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.56 E-value=8.1e-07 Score=74.83 Aligned_cols=101 Identities=20% Similarity=0.269 Sum_probs=74.7
Q ss_pred CCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 005136 584 IKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLL 660 (712)
Q Consensus 584 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 660 (712)
..| +......++..+...|++++|...++.. ...| +...+..+...+...|++++|...++++++..|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 355 4455666777777778888888777776 3334 456666666677778888888888888888888888888888
Q ss_pred HHHHHhcCCchhHHHHHHHHHhCC
Q 005136 661 SNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 661 ~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
+.++...|++++|...+++.++..
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhc
Confidence 888888888888888888777754
No 115
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.55 E-value=0.00044 Score=79.37 Aligned_cols=404 Identities=11% Similarity=0.027 Sum_probs=215.3
Q ss_pred hhhhHHHHHHHhCCC--C---c--chhhhHHHHHHhcCC----ChhHhHHHHhhcCCCCcchHHHHHHHHHhcCChHHHH
Q 005136 39 QGRALHGHLIKTGIH--K---E--RYLTTRLLIMYLGSR----KSLEANEIVKDLNGFDLVVHNCMINANIQWGNLEEAQ 107 (712)
Q Consensus 39 ~a~~~~~~~~~~~~~--~---~--~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 107 (712)
.+.++++.+.+.|.- + + -+-++.+++-+.+.. +...... .+......+...|++.+|.
T Consensus 293 ~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~~~~~-----------lh~raa~~~~~~g~~~~Al 361 (903)
T PRK04841 293 NGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQELPE-----------LHRAAAEAWLAQGFPSEAI 361 (903)
T ss_pred cHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCchHHHH-----------HHHHHHHHHHHCCCHHHHH
Confidence 356677888877751 1 1 234566666554321 1222222 2334445566778888887
Q ss_pred HHHhhCCCCChhH--HHHHHHHHHccCChHHHHHHhhhCCC----CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcC--
Q 005136 108 RLFDGMPERNEVS--WTALISGFMKHGRVEESMWYFERNPF----QNVISWTAAICGFVQNGFSFEALKLFLKLLESG-- 179 (712)
Q Consensus 108 ~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-- 179 (712)
............. ...........|+++.+..+++.++. .+..........+...|++++|..++......-
T Consensus 362 ~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~ 441 (903)
T PRK04841 362 HHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKD 441 (903)
T ss_pred HHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccc
Confidence 7776665442221 12223345567888888888877642 223333444555677899999998888775431
Q ss_pred C----CCCH--hhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHccCChHHHHHHHhhcCC--
Q 005136 180 V----KPNE--VTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHV----SVCNSLITLSLKMGEVDLARSVFDRMEK-- 247 (712)
Q Consensus 180 ~----~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~-- 247 (712)
. .+.. .....+...+...|+++.|...++.....-...+. ...+.+...+...|+++.|...+++...
T Consensus 442 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~ 521 (903)
T PRK04841 442 RNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMA 521 (903)
T ss_pred cCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 0 1111 12223344556789999999999888764212221 2345666677788999999988887763
Q ss_pred -----C--CcchHHHHHHHHHhcCCHHHHHHHHhhCCC-------CC----ceeHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005136 248 -----R--DVVSWTVILDVFIEMGDLGEARRIFDEMPE-------RN----EVSWSVMIARYNQSGYPEEAFRLFRQMTR 309 (712)
Q Consensus 248 -----~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 309 (712)
+ ...++..+...+...|+++.|...+++... ++ ...+..+...+...|++++|...+++...
T Consensus 522 ~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~ 601 (903)
T PRK04841 522 RQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLE 601 (903)
T ss_pred hhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHH
Confidence 1 112445566677889999999888776532 11 11233444556667888888877777644
Q ss_pred CC--CCCC--HHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCc-HHHH-----HHHHHHHHhcCChHHHHHHHHhhhc
Q 005136 310 YS--FKPN--TSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKD-VFIS-----NALIDLYSKCGETKDGRLVFDSIVE 379 (712)
Q Consensus 310 ~~--~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~ 379 (712)
.. ..+. ...+..+.......|+.+.|...+........... ...+ ...+..+...|+.+.|...+.....
T Consensus 602 ~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~ 681 (903)
T PRK04841 602 VLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPK 681 (903)
T ss_pred hhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCC
Confidence 21 1111 22233334444556666666666665543210000 0000 0011223334555555555444332
Q ss_pred CCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHH
Q 005136 380 KDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLS----GEIPN-KSTF 454 (712)
Q Consensus 380 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~~p~-~~~~ 454 (712)
........ ....+..+..++...|++++|...+++.... |..++ ..+.
T Consensus 682 ~~~~~~~~---------------------------~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~ 734 (903)
T PRK04841 682 PEFANNHF---------------------------LQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNL 734 (903)
T ss_pred CCCccchh---------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 11110000 0001223444555666666667666665432 22221 1234
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHc
Q 005136 455 SSVLCASASVASLEKGKDLHGKIIKL 480 (712)
Q Consensus 455 ~~ll~~~~~~~~~~~a~~~~~~~~~~ 480 (712)
..+..++...|+.++|...+.+..+.
T Consensus 735 ~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 735 ILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44445566666766666666666543
No 116
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=4.1e-05 Score=67.85 Aligned_cols=155 Identities=15% Similarity=0.191 Sum_probs=84.8
Q ss_pred HHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc----cCcH
Q 005136 493 TDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSH----SGLV 568 (712)
Q Consensus 493 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~ 568 (712)
...|...|++++|.+.......-+.. -.=+..+.+..+.+-|.+.+++|.+ -.+..|.+.|..++.+ .+.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~lE~~--Al~VqI~lk~~r~d~A~~~lk~mq~---ided~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGENLEAA--ALNVQILLKMHRFDLAEKELKKMQQ---IDEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccchHHHH--HHHHHHHHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHHhccchhh
Confidence 34466667777777766663322222 1223344556666777777777765 2344555555555543 3446
Q ss_pred HHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcC-CHHHHHHHHHH
Q 005136 569 DKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM--PFEPDSNAWASLLSGCKTYK-NEQIAERAVKN 645 (712)
Q Consensus 569 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~ 645 (712)
..|.-+|+++.+ ...|++.+.+-.+.++...|++++|..+++.. +...++.++.+++-.-...| +.+--.+...+
T Consensus 190 qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 190 QDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 666666666652 24556666666666666666666666666665 22334555555544433333 33444555555
Q ss_pred HhccCCCCC
Q 005136 646 LWKLAEEHP 654 (712)
Q Consensus 646 ~~~~~p~~~ 654 (712)
....+|+++
T Consensus 268 Lk~~~p~h~ 276 (299)
T KOG3081|consen 268 LKLSHPEHP 276 (299)
T ss_pred HHhcCCcch
Confidence 666666654
No 117
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.54 E-value=4.5e-06 Score=88.63 Aligned_cols=128 Identities=16% Similarity=0.132 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHH
Q 005136 552 ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPDS-NAWASLLS 628 (712)
Q Consensus 552 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~ 628 (712)
...+..|.....+.|.+++|...++.+. .+.| +......++.++.+.+++++|...+++. ...|+. .....+..
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~---~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~ 162 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIH---QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK 162 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHH---hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 4444455555555555555555555554 3345 3444445555555555555555555554 334442 22333333
Q ss_pred HHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 629 GCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 629 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
++.+.|++++|.++|++++...|+++.++..++.++...|+.++|...|++.++
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355555555555555555555555555555555555555555555555555543
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.53 E-value=7e-06 Score=82.84 Aligned_cols=218 Identities=12% Similarity=0.077 Sum_probs=144.9
Q ss_pred CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC--CCCcchHHHHHH
Q 005136 448 IPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP--DKNEISWTVMVR 525 (712)
Q Consensus 448 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~ 525 (712)
+|-...-..+...+.+.|-...|..+++++. .+...+.+|...|+...|..+..+.. +|++..|..+.+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGD 465 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGD 465 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhh
Confidence 3444444455556666666677777666543 34556677777777777766665544 345556666666
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCCh
Q 005136 526 GLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRL 604 (712)
Q Consensus 526 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 604 (712)
......-++.|.++.+..... .-..+.....+.+++.++.+.|+.-. .+.| -..+|..++-+..+.+++
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl---~~nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSL---EINPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHh---hcCccchhHHHhccHHHHHHhhh
Confidence 655555566666665543221 11111112234577777777777655 3455 667777777778888888
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 605 SEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 605 ~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
+.|.+.|... ...|+ ...|+++..+|.+.|+..+|...++++++-+-++..++....-+...-|.|++|++.+.++.+
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 8888888776 45665 666888888888888888888888888887777777888888888888888888888888776
Q ss_pred CC
Q 005136 683 KG 684 (712)
Q Consensus 683 ~~ 684 (712)
-.
T Consensus 616 ~~ 617 (777)
T KOG1128|consen 616 LR 617 (777)
T ss_pred hh
Confidence 43
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.53 E-value=6e-06 Score=73.12 Aligned_cols=158 Identities=11% Similarity=0.094 Sum_probs=124.7
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHH
Q 005136 516 NEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCV 594 (712)
Q Consensus 516 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 594 (712)
|... ..+...+...|+-+....+....... .+.+......++....+.|++..|+..+.+.. ...| |...|+.+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~---~l~p~d~~~~~~l 140 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA---RLAPTDWEAWNLL 140 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHh---ccCCCChhhhhHH
Confidence 4444 56677888888888888887775542 12233455567888888999999999999887 3344 88899999
Q ss_pred HHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchh
Q 005136 595 VDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWID 672 (712)
Q Consensus 595 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~e 672 (712)
+-+|.+.|++++|..-|.+. ...| ++...+++...+.-.|+.+.|+.++..+...-+.+..+-..|+.+....|++++
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHH
Confidence 99999999999999888876 4444 466677888888889999999999999988888888899999999999999999
Q ss_pred HHHHHH
Q 005136 673 AMNVRK 678 (712)
Q Consensus 673 A~~~~~ 678 (712)
|..+..
T Consensus 221 A~~i~~ 226 (257)
T COG5010 221 AEDIAV 226 (257)
T ss_pred HHhhcc
Confidence 988754
No 120
>PLN02789 farnesyltranstransferase
Probab=98.51 E-value=2.4e-05 Score=75.24 Aligned_cols=181 Identities=13% Similarity=0.105 Sum_probs=117.1
Q ss_pred HHhcC-ChHHHHHHhccCCC---CCcchHHHHHHHHHHcCCh--HHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcH
Q 005136 496 YAKSG-DIESSRRVFDRMPD---KNEISWTVMVRGLAESGYA--KESINLFEEMEKTSITP-NELTILSVLFACSHSGLV 568 (712)
Q Consensus 496 ~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 568 (712)
+...| ++++++..++.+.+ ++..+|+.-...+.+.|+. ++++..++++++ ..| |...|.....++...|++
T Consensus 81 L~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~ 158 (320)
T PLN02789 81 LEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGW 158 (320)
T ss_pred HHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhH
Confidence 33444 45666666665542 3334555444444455542 567777777777 444 456777777777778888
Q ss_pred HHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhc---CCh----HHHHHHHHhC-CCCCC-HHHHHHHHHHHhhc----C
Q 005136 569 DKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRS---GRL----SEAEDFINSM-PFEPD-SNAWASLLSGCKTY----K 634 (712)
Q Consensus 569 ~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~~----~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~----g 634 (712)
+++++.++++.+ ..| |...|+....++.+. |.. ++++++..++ ...|+ ...|..+...+... +
T Consensus 159 ~eeL~~~~~~I~---~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~ 235 (320)
T PLN02789 159 EDELEYCHQLLE---EDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALV 235 (320)
T ss_pred HHHHHHHHHHHH---HCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccc
Confidence 888888888873 245 566676666665544 222 4566666444 44554 55666666666552 3
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC------------------CchhHHHHHHHHH
Q 005136 635 NEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAG------------------RWIDAMNVRKLMT 681 (712)
Q Consensus 635 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~eA~~~~~~~~ 681 (712)
...+|...+.++.+..|+++.++..|+.+|.... ..++|.++++.+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 236 SDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred cchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 4567888888888889999999999999998643 2366888888774
No 121
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.50 E-value=0.0016 Score=64.11 Aligned_cols=147 Identities=17% Similarity=0.138 Sum_probs=93.3
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCC-chhhHHHHHHHHHhcCChHHHHHHhc
Q 005136 432 FDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPY-DVFLGTALTDTYAKSGDIESSRRVFD 510 (712)
Q Consensus 432 ~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 510 (712)
.+....+++++...-..--.-+|-..+....+...+..|..+|.++.+.+..+ .+.+..++++.|+ +++.+.|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 45555666665543222222345556666666677777777777777766555 6666677777555 466777777777
Q ss_pred cCCC--C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHhcccCcHHHHHHHHHhcc
Q 005136 511 RMPD--K-NEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNE--LTILSVLFACSHSGLVDKGLKYFNSME 579 (712)
Q Consensus 511 ~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~ 579 (712)
--.+ + ++.--...+.-+...++-..|..+|++....++.|+. ..|..++..=..-|+...+.++-++..
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 6542 2 3333445566666777777777777777777555544 567777777777777777777666554
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.50 E-value=1.1e-05 Score=71.57 Aligned_cols=158 Identities=15% Similarity=0.116 Sum_probs=120.0
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005136 485 DVFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFA 561 (712)
Q Consensus 485 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 561 (712)
|..+ ..+...+...|+-+....+..... ..|......++....+.|++.+|+..+.+.... -++|...|+.+.-+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaa 143 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAA 143 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHH
Confidence 3444 566667777788777777776644 234456666888888999999999999988874 35566888888888
Q ss_pred hcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHH
Q 005136 562 CSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSMPF--EPDSNAWASLLSGCKTYKNEQI 638 (712)
Q Consensus 562 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~ 638 (712)
|.+.|+.+.|..-|.+.. .+.| ++..++.|+-.|.-.|+++.|..++.+... ..+......+.-+....|++++
T Consensus 144 ldq~Gr~~~Ar~ay~qAl---~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 144 LDQLGRFDEARRAYRQAL---ELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHccChhHHHHHHHHHH---HhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHH
Confidence 999999999998888887 4566 567788888888889999999999888733 2256667777777888999998
Q ss_pred HHHHHHHHh
Q 005136 639 AERAVKNLW 647 (712)
Q Consensus 639 a~~~~~~~~ 647 (712)
|+.+..+-+
T Consensus 221 A~~i~~~e~ 229 (257)
T COG5010 221 AEDIAVQEL 229 (257)
T ss_pred HHhhccccc
Confidence 888766543
No 123
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.48 E-value=4.4e-06 Score=84.26 Aligned_cols=189 Identities=16% Similarity=0.158 Sum_probs=162.0
Q ss_pred CCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005136 481 GFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLF 560 (712)
Q Consensus 481 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 560 (712)
+++|-...-..+.+.+...|-..+|..++++.. .|...+.+|+..|+..+|..+..+..+ -+|+...|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 456666677788899999999999999999854 677888999999999999999998888 5788899999998
Q ss_pred HhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHH
Q 005136 561 ACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQI 638 (712)
Q Consensus 561 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~ 638 (712)
......-+++|.++.+.... ..-..++....+.++++++.+.++.- ...|- ..+|..+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sa--------rA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISA--------RAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhH--------HHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 88888889999999876642 23334455556789999999999875 55554 7788888888899999999
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 639 AERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 639 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
|...|.+.+.++|++...++++..+|.+.|+..+|...+++.++.+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999876
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.48 E-value=1.4e-05 Score=77.26 Aligned_cols=141 Identities=18% Similarity=0.144 Sum_probs=81.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHhcccCcHHHHHHHHHhcchhcCCCCc-hHHHHHHHHHhh
Q 005136 522 VMVRGLAESGYAKESINLFEEMEKTSITPNELTIL-SVLFACSHSGLVDKGLKYFNSMEPIYNIKPN-GRHYTCVVDMLS 599 (712)
Q Consensus 522 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 599 (712)
.....+...|++++|+..+..++. -.|+...|. .....+...++.++|.+.++++. ...|+ ......++.+|.
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a~all 385 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLNLAQALL 385 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHHHHHHHH
Confidence 334445556666666666666665 344443333 33445666666666666666665 33553 444555666666
Q ss_pred hcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHH
Q 005136 600 RSGRLSEAEDFINSM--PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVR 677 (712)
Q Consensus 600 ~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~ 677 (712)
+.|++.+|+..+++. ..+.++..|..+..+|...|+..++... .+..|.-.|++++|+..+
T Consensus 386 ~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~l 448 (484)
T COG4783 386 KGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIFL 448 (484)
T ss_pred hcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHHH
Confidence 666666666666665 2233456666666666666665544442 333455566777777777
Q ss_pred HHHHhCC
Q 005136 678 KLMTEKG 684 (712)
Q Consensus 678 ~~~~~~~ 684 (712)
.+..+..
T Consensus 449 ~~A~~~~ 455 (484)
T COG4783 449 MRASQQV 455 (484)
T ss_pred HHHHHhc
Confidence 7766643
No 125
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.48 E-value=5e-05 Score=81.58 Aligned_cols=167 Identities=13% Similarity=0.139 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcC
Q 005136 351 VFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHK 430 (712)
Q Consensus 351 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 430 (712)
...+..|+..|...|++++|..+.+...+..+.....|-.+...+.+.++...+.-+ .++.......
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~ 97 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNL 97 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhccccc
Confidence 455566666666667777777776666665555555555555555555555444211 3333333444
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhc
Q 005136 431 QFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFD 510 (712)
Q Consensus 431 ~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 510 (712)
++..+..+...|... .-+...+..+..+|.+.|+.+++..+++++.+.. +.++.+.+.+...|... ++++|.+++.
T Consensus 98 ~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 98 KWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred chhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 443334444444442 2333455666666667777777777777776665 55666667777766666 7777776655
Q ss_pred cCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005136 511 RMPDKNEISWTVMVRGLAESGYAKESINLFEEMEK 545 (712)
Q Consensus 511 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 545 (712)
+. +..+...+++..+.++|.++..
T Consensus 174 KA-----------V~~~i~~kq~~~~~e~W~k~~~ 197 (906)
T PRK14720 174 KA-----------IYRFIKKKQYVGIEEIWSKLVH 197 (906)
T ss_pred HH-----------HHHHHhhhcchHHHHHHHHHHh
Confidence 53 2335556666677777776666
No 126
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.44 E-value=1.1e-05 Score=71.97 Aligned_cols=151 Identities=13% Similarity=0.160 Sum_probs=112.0
Q ss_pred HHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHH
Q 005136 494 DTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLK 573 (712)
Q Consensus 494 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 573 (712)
..|...|+++.+....+.+..+. ..+...++.++++..+++..+.. +.+...|..+...|...|+++.|..
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~ 94 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALL 94 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45677777776654443322211 01123566778888888877742 3456778888899999999999999
Q ss_pred HHHhcchhcCCCC-chHHHHHHHHHh-hhcCC--hHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHh
Q 005136 574 YFNSMEPIYNIKP-NGRHYTCVVDML-SRSGR--LSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLW 647 (712)
Q Consensus 574 ~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 647 (712)
.|++.. .+.| +...+..++.++ ...|+ .++|.+++++. ...|+ ...+..+...+...|++++|+..+++++
T Consensus 95 a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 95 AYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999887 4567 788888888874 67777 59999999998 55564 6667777777999999999999999999
Q ss_pred ccCCCCCch
Q 005136 648 KLAEEHPAG 656 (712)
Q Consensus 648 ~~~p~~~~~ 656 (712)
+..|.+..-
T Consensus 172 ~l~~~~~~r 180 (198)
T PRK10370 172 DLNSPRVNR 180 (198)
T ss_pred hhCCCCccH
Confidence 998886554
No 127
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=1.1e-05 Score=70.65 Aligned_cols=196 Identities=13% Similarity=0.132 Sum_probs=117.7
Q ss_pred chHHHHHHHHHHHH---cC-CCCchh-hHHHHHHHHHhcCChHHHHHHhccCCCCCcch---HHHHHHHHHHcCChHHHH
Q 005136 466 SLEKGKDLHGKIIK---LG-FPYDVF-LGTALTDTYAKSGDIESSRRVFDRMPDKNEIS---WTVMVRGLAESGYAKESI 537 (712)
Q Consensus 466 ~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~ 537 (712)
+.++..+++.++.. .| ..++.. ++..++-+....|+.+.|...++.+...-+.+ -..-...+-..|++++|+
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~ 106 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAI 106 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHH
Confidence 34455555555442 23 344433 44555556667777787877777765322222 122223355677888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC-CC
Q 005136 538 NLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM-PF 616 (712)
Q Consensus 538 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 616 (712)
++++.+.+.. +.|..++-.-+...-..|..-+|++-+....+ .+..|...|..+...|...|++++|.-.++++ -.
T Consensus 107 e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 107 EYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 8888887754 33445666555556666666677666665552 23347778888888888888888888888877 33
Q ss_pred CCC-HHHHHHHHHHHhhcC---CHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 005136 617 EPD-SNAWASLLSGCKTYK---NEQIAERAVKNLWKLAEEHPAGYVLLSNIY 664 (712)
Q Consensus 617 ~p~-~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 664 (712)
.|- +..+..+...+...| +.+.|..++.+++++.|.+...+..+-.++
T Consensus 184 ~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 184 QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHH
Confidence 443 444555555543333 566777788888888776555544444333
No 128
>PLN02789 farnesyltranstransferase
Probab=98.43 E-value=1.8e-05 Score=76.06 Aligned_cols=186 Identities=11% Similarity=0.107 Sum_probs=137.8
Q ss_pred HHhcCChHHHHHHhccCCCC---CcchHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCc--H
Q 005136 496 YAKSGDIESSRRVFDRMPDK---NEISWTVMVRGLAESG-YAKESINLFEEMEKTSITP-NELTILSVLFACSHSGL--V 568 (712)
Q Consensus 496 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~--~ 568 (712)
+...++.++|......+.+. +..+|+.-...+...| ++++++..++++.+. .| +..+|+.....+.+.|. .
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCchhh
Confidence 44567788888888877643 3345666666666667 679999999999984 44 44566655555555665 3
Q ss_pred HHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhc---CC----HHH
Q 005136 569 DKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTY---KN----EQI 638 (712)
Q Consensus 569 ~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~----~~~ 638 (712)
++++.+++++. ...| |..+|.....++.+.|++++|++.++++ ...| +...|.......... |. .+.
T Consensus 125 ~~el~~~~kal---~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 125 NKELEFTRKIL---SLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred HHHHHHHHHHH---HhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHH
Confidence 67888888887 4477 8899999999999999999999999998 4444 355565555444333 22 357
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHh----cCCchhHHHHHHHHHhCCCc
Q 005136 639 AERAVKNLWKLAEEHPAGYVLLSNIYAS----AGRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 639 a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~~~ 686 (712)
...+..+++..+|+|..++..++.++.. .++..+|.+...+..+.+++
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~ 253 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN 253 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC
Confidence 8888889999999999999999999988 45667899988887775543
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.41 E-value=0.00011 Score=71.23 Aligned_cols=118 Identities=21% Similarity=0.235 Sum_probs=79.5
Q ss_pred HhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHH
Q 005136 561 ACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQ 637 (712)
Q Consensus 561 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~ 637 (712)
.+...|+++.|+..++.+.. -.| |+..+...++.+.+.|+..+|.+.++++ ...|+ ...+..+..++...|+..
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~---~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIA---AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 34556677777777777662 245 5666666677777777777777777776 44555 444555666677777777
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHH
Q 005136 638 IAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMT 681 (712)
Q Consensus 638 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 681 (712)
+|+..++.....+|++|..|..|+.+|..+|+..+|.....+..
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 77777777777777777777777777777777777766655443
No 130
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.41 E-value=1.1e-05 Score=75.57 Aligned_cols=184 Identities=13% Similarity=0.035 Sum_probs=124.8
Q ss_pred CCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCC-C-chhhHHHHHHHHHhcCChHHHHHHhccCCC--C-Ccc---hH
Q 005136 449 PNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFP-Y-DVFLGTALTDTYAKSGDIESSRRVFDRMPD--K-NEI---SW 520 (712)
Q Consensus 449 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~---~~ 520 (712)
.....+......+...|+++.|...++++.+.... | ....+..+..++...|++++|...++.+.+ | +.. .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 44567777888899999999999999999875321 1 124667788899999999999999999863 2 222 35
Q ss_pred HHHHHHHHHc--------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHH
Q 005136 521 TVMVRGLAES--------GYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYT 592 (712)
Q Consensus 521 ~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 592 (712)
..+..++... |++++|++.++++.. ..|+......... .+..+... ......
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~-------------~~~~~~~~-----~~~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKK-------------RMDYLRNR-----LAGKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHH-------------HHHHHHHH-----HHHHHH
Confidence 5555666554 788999999999988 4565432211111 00000000 001123
Q ss_pred HHHHHhhhcCChHHHHHHHHhC-CC---CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC
Q 005136 593 CVVDMLSRSGRLSEAEDFINSM-PF---EP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEE 652 (712)
Q Consensus 593 ~l~~~~~~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 652 (712)
.++..|.+.|++++|...+++. .. .| ....+..+..++...|++++|...++.+....|+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5667788888888888888876 22 23 2566777888888889999888888877666553
No 131
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.37 E-value=7.6e-05 Score=80.96 Aligned_cols=203 Identities=16% Similarity=0.225 Sum_probs=116.2
Q ss_pred CCCccHHHHHHHHHHccCChHHHHHHHhhcCC--------CCcchHHHHHHHHHhcCCHHHHHHHHhhCCC-CC-ceeHH
Q 005136 216 EKHVSVCNSLITLSLKMGEVDLARSVFDRMEK--------RDVVSWTVILDVFIEMGDLGEARRIFDEMPE-RN-EVSWS 285 (712)
Q Consensus 216 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~ 285 (712)
|.+...|-..|......++.+.|++++++... .-...|.++++....-|.-+...+.|+++.+ -| -..|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 44556677777777777777777777776654 1223455555555555655666666665554 12 23455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCC-CcHHHHHHHHHHHHhc
Q 005136 286 VMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIE-KDVFISNALIDLYSKC 364 (712)
Q Consensus 286 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 364 (712)
.|...|.+.+.+++|.++|+.|.+. +......|...+..+.+.++-+.|..++...++.-.. .......-.+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 5666666666666666666666542 2244455555566666666666666666555543211 1233334444445555
Q ss_pred CChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 005136 365 GETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLL 444 (712)
Q Consensus 365 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 444 (712)
|+.+.++.+|+......|.....|+..++.-.+.|+.+.+ ..+|++...
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~v-------------------------------R~lfeRvi~ 1662 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYV-------------------------------RDLFERVIE 1662 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHH-------------------------------HHHHHHHHh
Confidence 6666666666655555554455555555555555555555 788888877
Q ss_pred CCCCCC
Q 005136 445 SGEIPN 450 (712)
Q Consensus 445 ~g~~p~ 450 (712)
.++.|-
T Consensus 1663 l~l~~k 1668 (1710)
T KOG1070|consen 1663 LKLSIK 1668 (1710)
T ss_pred cCCChh
Confidence 776654
No 132
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=7.5e-05 Score=66.22 Aligned_cols=237 Identities=11% Similarity=0.026 Sum_probs=155.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCh
Q 005136 423 ISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDI 502 (712)
Q Consensus 423 ~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 502 (712)
++-+.-.|++..++..-....... -+...-..+.++|...|.+..... .+.... .|....+..+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchh
Confidence 444556677776666555544331 233333344455655565443222 222222 34444444444444444444
Q ss_pred HHHH-HHhccCCCC----CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHh
Q 005136 503 ESSR-RVFDRMPDK----NEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNS 577 (712)
Q Consensus 503 ~~A~-~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 577 (712)
++-. ++.+.+..+ +......-+..|+..|++++|++.+.... +......=+..+.+....+-|.+.++.
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332 233333322 22223333456889999999999987621 222233334456677889999999999
Q ss_pred cchhcCCCCchHHHHHHHHHhhh----cCChHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC
Q 005136 578 MEPIYNIKPNGRHYTCVVDMLSR----SGRLSEAEDFINSM--PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAE 651 (712)
Q Consensus 578 ~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 651 (712)
|.+ --+..+.+.|+.++++ .++..+|.-+|+++ +..|++.+.+..+.++...|++++|+.+++.++..++
T Consensus 163 mq~----ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQ----IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHc----cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 972 2255677777777754 45799999999999 3688999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCCchhHHH
Q 005136 652 EHPAGYVLLSNIYASAGRWIDAMN 675 (712)
Q Consensus 652 ~~~~~~~~l~~~~~~~g~~~eA~~ 675 (712)
++|+++..++-+-...|+-.++.+
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHH
Confidence 999999999999999999877655
No 133
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.33 E-value=5.6e-05 Score=80.48 Aligned_cols=135 Identities=10% Similarity=0.123 Sum_probs=93.5
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHH
Q 005136 516 NEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNE-LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTC 593 (712)
Q Consensus 516 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 593 (712)
++..+-.|.....+.|++++|..+++...+ +.|+. .....+...+.+.+.+++|+..+++.. ...| +......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---~~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---SGGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---hcCCCCHHHHHH
Confidence 355566667777777777777777777777 56655 345566667777777777777777776 3356 5666677
Q ss_pred HHHHhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCc
Q 005136 594 VVDMLSRSGRLSEAEDFINSMP-FEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPA 655 (712)
Q Consensus 594 l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 655 (712)
++.++.+.|++++|..+|+++. ..|+ ...+..+...+...|+.++|...|+++++...+-..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~ 223 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGAR 223 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchH
Confidence 7777777777777777777762 3333 666777777777777777777777777776544333
No 134
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.32 E-value=7.7e-06 Score=80.07 Aligned_cols=121 Identities=15% Similarity=0.116 Sum_probs=97.9
Q ss_pred HHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhh
Q 005136 555 ILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKT 632 (712)
Q Consensus 555 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 632 (712)
...++..+...++++.|+++|+++.+. .|+ ....+++++...++-.+|.+++++. ...| +...+......+..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445666666778888889988888733 344 4556788888888888999988887 3344 46666666666889
Q ss_pred cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHH
Q 005136 633 YKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLM 680 (712)
Q Consensus 633 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 680 (712)
.++++.|..+++++.+..|++...|..|+.+|.+.|++++|+-.++.+
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999988764
No 135
>PF12854 PPR_1: PPR repeat
Probab=98.31 E-value=1.1e-06 Score=52.02 Aligned_cols=32 Identities=41% Similarity=0.619 Sum_probs=22.4
Q ss_pred CCCCcHHHHHHHHHHHHhcCChHHHHHHHHhh
Q 005136 346 GIEKDVFISNALIDLYSKCGETKDGRLVFDSI 377 (712)
Q Consensus 346 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 377 (712)
|+.||..+|++|+++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777665
No 136
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=3.9e-06 Score=76.41 Aligned_cols=112 Identities=13% Similarity=0.080 Sum_probs=95.6
Q ss_pred CCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH-hhcC--CHHHHHHHHHHHhccCCCCCchH
Q 005136 584 IKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGC-KTYK--NEQIAERAVKNLWKLAEEHPAGY 657 (712)
Q Consensus 584 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~g--~~~~a~~~~~~~~~~~p~~~~~~ 657 (712)
-+| |...|..|+.+|...|+...|..-|.+. .+.| ++..+..+..++ ...| ...++..++++++.++|.|+.+.
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 367 8999999999999999999999999987 4444 466666666663 3333 56889999999999999999999
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHhCCCccCCcccEEE
Q 005136 658 VLLSNIYASAGRWIDAMNVRKLMTEKGLRKSGGCSWVE 695 (712)
Q Consensus 658 ~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~ 695 (712)
..|+..+..+|++.+|...|+.|++..++..|..+.|+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 99999999999999999999999999888888766554
No 137
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.27 E-value=2.1e-05 Score=66.67 Aligned_cols=115 Identities=16% Similarity=0.095 Sum_probs=73.7
Q ss_pred cCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHhhcCCHHH
Q 005136 565 SGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPDS----NAWASLLSGCKTYKNEQI 638 (712)
Q Consensus 565 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~ 638 (712)
.++...+...++.+..+++-.| .......++..+...|++++|...|+.. ...|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5666667666777664432222 2334445667777777888887777776 222332 233445556777888888
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHH
Q 005136 639 AERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLM 680 (712)
Q Consensus 639 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 680 (712)
|...++.. ...+-.+.++..+|.+|.+.|++++|+..|++.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 88877653 223334667778888888888888888888764
No 138
>PF12854 PPR_1: PPR repeat
Probab=98.26 E-value=1.4e-06 Score=51.58 Aligned_cols=32 Identities=44% Similarity=0.511 Sum_probs=16.2
Q ss_pred CCCCCccHHHHHHHHHHccCChHHHHHHHhhc
Q 005136 214 GFEKHVSVCNSLITLSLKMGEVDLARSVFDRM 245 (712)
Q Consensus 214 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 245 (712)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34455555555555555555555555555444
No 139
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.24 E-value=0.00044 Score=74.61 Aligned_cols=150 Identities=6% Similarity=0.044 Sum_probs=86.0
Q ss_pred eHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 005136 283 SWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYS 362 (712)
Q Consensus 283 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 362 (712)
++-.+..+|-+.|+.+++..+++++.+.. +-|....+.+...++.. ++++|.+++...... +.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i 180 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FI 180 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HH
Confidence 45556666777777777777777777654 34556666676666666 777777776665543 55
Q ss_pred hcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 005136 363 KCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEM 442 (712)
Q Consensus 363 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 442 (712)
..+++..+..+|.++....+.+...+..+.+.....-...++ +.++-.+-..|-..++++++..+++..
T Consensus 181 ~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~-----------~~~~~~l~~~y~~~~~~~~~i~iLK~i 249 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRL-----------VGLLEDLYEPYKALEDWDEVIYILKKI 249 (906)
T ss_pred hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchh-----------HHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 556777777777777766655444444333333222112222 233444555566666666666666666
Q ss_pred HHCCCCCCHHHHHHHHHHH
Q 005136 443 LLSGEIPNKSTFSSVLCAS 461 (712)
Q Consensus 443 ~~~g~~p~~~~~~~ll~~~ 461 (712)
++.. +-|.....-++.+|
T Consensus 250 L~~~-~~n~~a~~~l~~~y 267 (906)
T PRK14720 250 LEHD-NKNNKAREELIRFY 267 (906)
T ss_pred HhcC-CcchhhHHHHHHHH
Confidence 6543 22333444444443
No 140
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=0.00017 Score=63.48 Aligned_cols=186 Identities=13% Similarity=0.145 Sum_probs=134.3
Q ss_pred hcCChhHHHHHHHHHHH---CC-CCCCHH-HHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCh
Q 005136 428 EHKQFDLVFAVFNEMLL---SG-EIPNKS-TFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDI 502 (712)
Q Consensus 428 ~~~~~~~a~~~~~~~~~---~g-~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 502 (712)
...+.++..+++.++.. .| ..++.. .|..++-+....|..+-|...++.+.+.- +-+..+-..-.-.+...|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 34567888888887764 34 445554 45667777778888888998888887763 44444444444446677889
Q ss_pred HHHHHHhccCCCCC---cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcc
Q 005136 503 ESSRRVFDRMPDKN---EISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSME 579 (712)
Q Consensus 503 ~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 579 (712)
++|.++++.+.+.| ..++-.-+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 99999999887543 445666666677788888888888887775 56678889999999999999999999999887
Q ss_pred hhcCCCC-chHHHHHHHHHhhhcC---ChHHHHHHHHhC-CCCC
Q 005136 580 PIYNIKP-NGRHYTCVVDMLSRSG---RLSEAEDFINSM-PFEP 618 (712)
Q Consensus 580 ~~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p 618 (712)
-+.| ++..+..+++.+.-.| +.+-|.++|.+. ...|
T Consensus 182 ---l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 182 ---LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred ---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 4567 6667777877765444 456677777776 5455
No 141
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.23 E-value=2e-05 Score=66.31 Aligned_cols=112 Identities=16% Similarity=0.244 Sum_probs=88.3
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-C
Q 005136 539 LFEEMEKTSITPNE-LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-P 615 (712)
Q Consensus 539 ~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 615 (712)
.++++.. ..|+. .....+...+...|++++|.+.|+.+.. ..| +...+..++.++...|++++|...+++. .
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA---YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555 45544 4466677778888999999999988873 245 7788889999999999999999998887 4
Q ss_pred CCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCc
Q 005136 616 FEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPA 655 (712)
Q Consensus 616 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 655 (712)
..| +...+..+...+...|+++.|...+++++++.|+++.
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 444 4677777777888999999999999999999998765
No 142
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.22 E-value=8.4e-06 Score=73.69 Aligned_cols=92 Identities=18% Similarity=0.265 Sum_probs=44.1
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCCh
Q 005136 527 LAESGYAKESINLFEEMEKTSITPN-ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRL 604 (712)
Q Consensus 527 ~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 604 (712)
+.+.+++.+|+..|.+.++ +.|+ .+.|..-..+|.+.|.++.|++-.+... .+.| ...+|..|+.+|...|++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccCcH
Confidence 4445555555555555555 3432 2333344445555555555555554444 2344 234455555555555555
Q ss_pred HHHHHHHHhC-CCCCCHHHH
Q 005136 605 SEAEDFINSM-PFEPDSNAW 623 (712)
Q Consensus 605 ~~A~~~~~~~-~~~p~~~~~ 623 (712)
++|++.|++. .+.|+..+|
T Consensus 166 ~~A~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESY 185 (304)
T ss_pred HHHHHHHHhhhccCCCcHHH
Confidence 5555555444 344444443
No 143
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.21 E-value=0.0067 Score=58.56 Aligned_cols=86 Identities=17% Similarity=0.226 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHcCCCCCHH----HHHHHHH--HhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHH
Q 005136 533 AKESINLFEEMEKTSITPNEL----TILSVLF--ACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSE 606 (712)
Q Consensus 533 ~~~A~~~~~~~~~~~~~p~~~----~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 606 (712)
..+-+++-.-+.+.|++|-.+ .-+.|.. .+...|++.++.-+-.-+. .+.|++.+|..++-++....++++
T Consensus 437 ~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~e 513 (549)
T PF07079_consen 437 IPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQE 513 (549)
T ss_pred HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHH
Confidence 344444445556677777443 2333333 3456789988887665555 568999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHH
Q 005136 607 AEDFINSMPFEPDSNAW 623 (712)
Q Consensus 607 A~~~~~~~~~~p~~~~~ 623 (712)
|..++.+++ |+..++
T Consensus 514 A~~~l~~LP--~n~~~~ 528 (549)
T PF07079_consen 514 AWEYLQKLP--PNERMR 528 (549)
T ss_pred HHHHHHhCC--CchhhH
Confidence 999999987 344443
No 144
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.20 E-value=3.1e-06 Score=61.11 Aligned_cols=66 Identities=15% Similarity=0.142 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC-CchhHHHHHHHHHhCC
Q 005136 619 DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAG-RWIDAMNVRKLMTEKG 684 (712)
Q Consensus 619 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~eA~~~~~~~~~~~ 684 (712)
++..|..+...+...|++++|+..++++++.+|+++.++..++.++...| ++++|++.+++.++.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 45678888888999999999999999999999999999999999999999 7999999999988754
No 145
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.20 E-value=2.8e-06 Score=60.44 Aligned_cols=60 Identities=20% Similarity=0.196 Sum_probs=53.6
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 626 LLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 626 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
+...+...|++++|+..++++++..|+++.++..++.++.+.|++++|+.+++++++..+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 345678899999999999999999999999999999999999999999999999987654
No 146
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.19 E-value=1.6e-05 Score=65.12 Aligned_cols=97 Identities=14% Similarity=0.061 Sum_probs=68.5
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC---CchHHHH
Q 005136 589 RHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD----SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH---PAGYVLL 660 (712)
Q Consensus 589 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 660 (712)
.++..++..+.+.|++++|.+.++.+ ...|+ ...+..+...+...|+++.|...++++....|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 34556667777777777777777776 22332 2345556666777888888888888888777775 4567778
Q ss_pred HHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 661 SNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 661 ~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
+.++.+.|++++|...++++++..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCc
Confidence 8888888888888888888877654
No 147
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.18 E-value=3.8e-05 Score=75.31 Aligned_cols=124 Identities=13% Similarity=0.128 Sum_probs=104.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccC
Q 005136 488 LGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSG 566 (712)
Q Consensus 488 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 566 (712)
....|+..+...++++.|..+|+++.+.++.....++..+...++..+|++++.+.++. .| +...+..-...|.+.+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence 34456667777889999999999999888888888888998899999999999998874 44 5556666677788999
Q ss_pred cHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhCCC
Q 005136 567 LVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSMPF 616 (712)
Q Consensus 567 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 616 (712)
+++.|+.+.+++. ...| +..+|..|+.+|...|++++|+..++.++.
T Consensus 249 ~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 249 KYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999999998 5578 677999999999999999999999998864
No 148
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.17 E-value=1.9e-06 Score=65.06 Aligned_cols=78 Identities=17% Similarity=0.222 Sum_probs=57.3
Q ss_pred cCChHHHHHHHHhC-CCCC---CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHH
Q 005136 601 SGRLSEAEDFINSM-PFEP---DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNV 676 (712)
Q Consensus 601 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~ 676 (712)
.|++++|+.+++++ ...| +...+..+..++.+.|++++|..++++ .+.+|.++.....+|.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46777777777776 2223 344555567778888888888888888 667777777888888889999999999888
Q ss_pred HHH
Q 005136 677 RKL 679 (712)
Q Consensus 677 ~~~ 679 (712)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
No 149
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.16 E-value=0.0083 Score=57.95 Aligned_cols=188 Identities=16% Similarity=0.138 Sum_probs=109.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHhccCC--CCCcch-------HHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHH
Q 005136 487 FLGTALTDTYAKSGDIESSRRVFDRMP--DKNEIS-------WTVMVRGLAE----SGYAKESINLFEEMEKTSITPNEL 553 (712)
Q Consensus 487 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~-------~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~ 553 (712)
..+..++....+.++...|.+.+.-+. +|+... -..+.+..+. .-+...=+.+|+..... ..|..
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~--DiDrq 376 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSY--DIDRQ 376 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhh--cccHH
Confidence 456666666777777777777766554 332221 1112222221 11223334555555553 23332
Q ss_pred -HHHHHHH---HhcccCc-HHHHHHHHHhcchhcCCCC-chHHHHHH----HHHhhhc---CChH---HHHHHHHhCCCC
Q 005136 554 -TILSVLF---ACSHSGL-VDKGLKYFNSMEPIYNIKP-NGRHYTCV----VDMLSRS---GRLS---EAEDFINSMPFE 617 (712)
Q Consensus 554 -~~~~l~~---~~~~~g~-~~~a~~~~~~~~~~~~~~p-~~~~~~~l----~~~~~~~---g~~~---~A~~~~~~~~~~ 617 (712)
....|+. -+.+.|. -++|+++++.+. .+.| |...-+.+ -..|... ..+. +-..++++.++.
T Consensus 377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il---~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~ 453 (549)
T PF07079_consen 377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLIL---QFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT 453 (549)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHH---HhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 2222322 3445555 888999999887 3345 44333322 1222211 1122 223334444444
Q ss_pred C----CHHHHHHHHHH--HhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHH
Q 005136 618 P----DSNAWASLLSG--CKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLM 680 (712)
Q Consensus 618 p----~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 680 (712)
| +...-+.+..+ +..+|++.++.-...=+.+..| +|.+|..+|.++....+++||.+++..+
T Consensus 454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 4 24445556666 5789999999988887788899 7999999999999999999999998754
No 150
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.11 E-value=0.02 Score=60.28 Aligned_cols=212 Identities=16% Similarity=0.157 Sum_probs=112.1
Q ss_pred hccchhhhhhhHHHHHHHhCCCCcchhhhHHHH--HHhcCCChhHhHHHHhhcC---CCCcchHHHHHHHHHhcCChHHH
Q 005136 32 TSQNLVIQGRALHGHLIKTGIHKERYLTTRLLI--MYLGSRKSLEANEIVKDLN---GFDLVVHNCMINANIQWGNLEEA 106 (712)
Q Consensus 32 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A 106 (712)
...+.+..|.+...++++.. |+.... ..+. ...+.|+.++|..+++... ..|..+...+-.+|.+.|..++|
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~~~a-~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNALYA-KVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCcHHH-HHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 45667778887777777764 232222 2222 3457777788877777652 23556777777777778888888
Q ss_pred HHHHhhCCC--CChhHHHHHHHHHHccCChHH----HHHHhhhCCCCCcccHHHHHHHHHhc-CCh---------hHHHH
Q 005136 107 QRLFDGMPE--RNEVSWTALISGFMKHGRVEE----SMWYFERNPFQNVISWTAAICGFVQN-GFS---------FEALK 170 (712)
Q Consensus 107 ~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~li~~~~~~-g~~---------~~A~~ 170 (712)
..+|++... |+......+..+|.|.+.+.+ |.+++...+..--..|+ +++...+. ... .-|.+
T Consensus 97 ~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs-V~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 97 VHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS-VISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH-HHHHHHHhccCCcccccchhHHHHHH
Confidence 888877765 344444455566667666643 34444444433333333 23322221 111 22344
Q ss_pred HHHHHHHcC-CCCCHhhHHHHHHHHhcccchHHHHHHHH-HHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCC
Q 005136 171 LFLKLLESG-VKPNEVTFSSICKACAEINDFRLGLSVFG-LIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEK 247 (712)
Q Consensus 171 ~~~~m~~~g-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 247 (712)
.++.+.+.+ ---+..-...-...+...|++++|..++. ...+.-..-+...-+.-+..+...+++.+..++..++..
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 444444433 11111222222334455666777777663 222322333344444555566666666666655555443
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.09 E-value=2.9e-05 Score=60.71 Aligned_cols=95 Identities=16% Similarity=0.252 Sum_probs=78.6
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 005136 590 HYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASA 667 (712)
Q Consensus 590 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 667 (712)
.+..++..+...|++++|...+++. ...|+ ...+..+...+...|++++|...++++.+..|.++.++..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 3556777888889999999998886 44444 456666777788889999999999999999999888999999999999
Q ss_pred CCchhHHHHHHHHHhCC
Q 005136 668 GRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 668 g~~~eA~~~~~~~~~~~ 684 (712)
|++++|...+++..+..
T Consensus 82 ~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 82 GKYEEALEAYEKALELD 98 (100)
T ss_pred HhHHHHHHHHHHHHccC
Confidence 99999999998887644
No 152
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.03 E-value=0.011 Score=60.21 Aligned_cols=206 Identities=13% Similarity=0.026 Sum_probs=131.2
Q ss_pred CCcchhhhHHHHHHhcCCChhHhHHHHhhcCC-CCcchHHHHH----------HHHHhcCChHHHHHHHhhCCCCChhHH
Q 005136 53 HKERYLTTRLLIMYLGSRKSLEANEIVKDLNG-FDLVVHNCMI----------NANIQWGNLEEAQRLFDGMPERNEVSW 121 (712)
Q Consensus 53 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~----------~~~~~~g~~~~A~~~~~~~~~~~~~~~ 121 (712)
.|.+..|..|.......-.++-|...|-+... +.+-.-..|- ..-+--|.+++|+++|-.+.++|..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDLA-- 766 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDLA-- 766 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhhh--
Confidence 35666676666655555555555555544311 2221111111 1122347888999988888877654
Q ss_pred HHHHHHHHccCChHHHHHHhhhCCCC-----CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc
Q 005136 122 TALISGFMKHGRVEESMWYFERNPFQ-----NVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAE 196 (712)
Q Consensus 122 ~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 196 (712)
+..+.+.|++-.+.+++...... -..+|+.+...++....|++|.+.|..-.. . ...+.++.+
T Consensus 767 ---ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------~---e~~~ecly~ 834 (1189)
T KOG2041|consen 767 ---IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------T---ENQIECLYR 834 (1189)
T ss_pred ---HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------h---HhHHHHHHH
Confidence 45667778888888888764322 235788888888888889998888876432 1 234566666
Q ss_pred ccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhC
Q 005136 197 INDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEM 276 (712)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 276 (712)
..++++-+.+... ++.+....-.+..++...|.-+.|.+.+-+...|. .-+..|...++|.+|.++-+..
T Consensus 835 le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 835 LELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred HHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhc
Confidence 6666655554443 35666777778888888888888888776655443 3456677778888888887776
Q ss_pred CCCCce
Q 005136 277 PERNEV 282 (712)
Q Consensus 277 ~~~~~~ 282 (712)
.-|.+.
T Consensus 905 ~l~qv~ 910 (1189)
T KOG2041|consen 905 QLPQVQ 910 (1189)
T ss_pred cchhHH
Confidence 555443
No 153
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.99 E-value=1.4e-05 Score=48.37 Aligned_cols=33 Identities=36% Similarity=0.675 Sum_probs=29.4
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 005136 151 SWTAAICGFVQNGFSFEALKLFLKLLESGVKPN 183 (712)
Q Consensus 151 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 183 (712)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688899999999999999999999999888887
No 154
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.98 E-value=1.3e-05 Score=48.03 Aligned_cols=33 Identities=33% Similarity=0.467 Sum_probs=27.0
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 005136 150 ISWTAAICGFVQNGFSFEALKLFLKLLESGVKP 182 (712)
Q Consensus 150 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 182 (712)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 568888888888888888888888888888776
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.97 E-value=7.7e-05 Score=61.05 Aligned_cols=105 Identities=10% Similarity=0.104 Sum_probs=69.1
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHH
Q 005136 554 TILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD----SNAWASLL 627 (712)
Q Consensus 554 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 627 (712)
++..+...+...|++++|.+.|+.+.....-.| ....+..++.++.+.|++++|...++.+ ...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455556666777777777776663321111 2345666777888888888888888776 22333 45566666
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCCCCchHH
Q 005136 628 SGCKTYKNEQIAERAVKNLWKLAEEHPAGYV 658 (712)
Q Consensus 628 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 658 (712)
.++...|+.++|...++++++..|+++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 7777888888888888888888888765443
No 156
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.97 E-value=4.9e-05 Score=75.14 Aligned_cols=108 Identities=15% Similarity=0.139 Sum_probs=91.7
Q ss_pred HHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhc
Q 005136 557 SVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTY 633 (712)
Q Consensus 557 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~ 633 (712)
.-...+...|+++.|+..|+++. ...| +...+..++.+|.+.|++++|+..++++ ...|+ ...+..+..+|...
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al---~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAI---DLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 34556778899999999999998 3467 6788899999999999999999999988 55554 67788888889999
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 005136 634 KNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASA 667 (712)
Q Consensus 634 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 667 (712)
|++++|+..++++++++|+++.+...+..+..+.
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999888877765544
No 157
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.96 E-value=0.00031 Score=59.56 Aligned_cols=121 Identities=17% Similarity=0.125 Sum_probs=75.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCc--hHHHHHHHH
Q 005136 523 MVRGLAESGYAKESINLFEEMEKTSITPNE----LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPN--GRHYTCVVD 596 (712)
Q Consensus 523 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~ 596 (712)
++..+ ..++...+...++.+.+. .|+. .....+...+...|++++|...|+.+... .-.|. ......|+.
T Consensus 18 ~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 18 ALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLAR 93 (145)
T ss_pred HHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHH
Confidence 33333 467777777777777774 2322 22334456677778888888888877743 21222 223445677
Q ss_pred HhhhcCChHHHHHHHHhCCCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHh
Q 005136 597 MLSRSGRLSEAEDFINSMPFE-PDSNAWASLLSGCKTYKNEQIAERAVKNLW 647 (712)
Q Consensus 597 ~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 647 (712)
++...|++++|+..++..... ..+..+......+...|++++|...|++++
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 777888888888888775322 224444555555778888888888877653
No 158
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.96 E-value=7.7e-05 Score=65.53 Aligned_cols=99 Identities=15% Similarity=0.068 Sum_probs=75.3
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD----SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLS 661 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 661 (712)
....+..++..+...|++++|...+++. ...|+ ...+..+...+...|++++|...++++++..|+++..+..++
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 3456677777888888888888888776 22222 356677777788889999999999999999998888888888
Q ss_pred HHHHhcCC--------------chhHHHHHHHHHhCCC
Q 005136 662 NIYASAGR--------------WIDAMNVRKLMTEKGL 685 (712)
Q Consensus 662 ~~~~~~g~--------------~~eA~~~~~~~~~~~~ 685 (712)
.++...|+ +++|++++++..+.++
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p 151 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAP 151 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCc
Confidence 88888777 5677777777766543
No 159
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.93 E-value=2.4e-05 Score=57.17 Aligned_cols=59 Identities=12% Similarity=0.088 Sum_probs=54.3
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 005136 628 SGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 628 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 686 (712)
..|.+.+++++|.++++++++.+|+++..+..+|.++.+.|++++|++.+++.++.++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 45788999999999999999999999999999999999999999999999999987653
No 160
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.91 E-value=1.1e-05 Score=58.13 Aligned_cols=56 Identities=13% Similarity=0.193 Sum_probs=48.4
Q ss_pred hhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 005136 631 KTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 631 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 686 (712)
...|++++|++.++++++.+|+++.+...|+.+|.+.|++++|.++++++....+.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 46789999999999999999999999999999999999999999999888776543
No 161
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.90 E-value=0.00085 Score=56.13 Aligned_cols=149 Identities=11% Similarity=0.081 Sum_probs=101.1
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHH
Q 005136 529 ESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEA 607 (712)
Q Consensus 529 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 607 (712)
+.=+++...+-..+-.+ ..|+...-..|..+....|++.+|...|++.. .|+-- |......++++....+++.+|
T Consensus 68 q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qal--sG~fA~d~a~lLglA~Aqfa~~~~A~a 143 (251)
T COG4700 68 QKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQAL--SGIFAHDAAMLLGLAQAQFAIQEFAAA 143 (251)
T ss_pred HhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHh--ccccCCCHHHHHHHHHHHHhhccHHHH
Confidence 33344444333333333 56766666777778888888888888888776 24443 677777788888888888888
Q ss_pred HHHHHhCC-CCC---CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 608 EDFINSMP-FEP---DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 608 ~~~~~~~~-~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
...++++. -.| ++.+...+...+...|+.+.|+..++.++.-.|+ +..-..++..+.++|+..||..-+..+-+
T Consensus 144 ~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 144 QQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 88888762 122 1333444556677788888888888888888887 66777778888888887777765555443
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.87 E-value=0.00013 Score=72.14 Aligned_cols=100 Identities=11% Similarity=0.117 Sum_probs=82.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhh
Q 005136 523 MVRGLAESGYAKESINLFEEMEKTSITPN-ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSR 600 (712)
Q Consensus 523 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 600 (712)
....+...|++++|++.|+++++ ..|+ ...|..+..+|...|++++|+..++++. .+.| +...|..++.+|..
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al---~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAI---ELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcCCHHHHHHHHHHHHH
Confidence 45667788999999999999998 4554 5677788889999999999999999998 3467 67889999999999
Q ss_pred cCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 005136 601 SGRLSEAEDFINSM-PFEPDSNAWASLL 627 (712)
Q Consensus 601 ~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 627 (712)
.|++++|+..|++. ...|+.......+
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999987 5566654444443
No 163
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.87 E-value=2.6e-05 Score=47.09 Aligned_cols=33 Identities=27% Similarity=0.578 Sum_probs=29.9
Q ss_pred eHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 005136 283 SWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPN 315 (712)
Q Consensus 283 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 315 (712)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 689999999999999999999999999998887
No 164
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.047 Score=56.43 Aligned_cols=338 Identities=13% Similarity=0.117 Sum_probs=197.7
Q ss_pred hCCCCCCHHHHHH-----HHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC---hHHHHHHHHhhhcC
Q 005136 309 RYSFKPNTSCFSI-----VLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGE---TKDGRLVFDSIVEK 380 (712)
Q Consensus 309 ~~~~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~ 380 (712)
.-|++.+..-|.. ++.-+...+.+..|+++-..+......- ..++......+.+..+ .+-+..+=+++...
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 4466666655544 4455556677777777766654321111 5667777777766532 22233333333332
Q ss_pred CCCceeeHHHHHHHHhccCChhhHHHHhhcCCCC--------CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 005136 381 DVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKR--------NDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKS 452 (712)
Q Consensus 381 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~ 452 (712)
..+..+|..+.+.--..|+.+-|..+++.-+.. +..-+...+.-..+.|+.+....++-.+... .+..
T Consensus 504 -~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s 579 (829)
T KOG2280|consen 504 -LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRS 579 (829)
T ss_pred -CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHH
Confidence 245667777777777888888888887765532 2334566667777778887777777666553 2222
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHh-ccC-----CCCCcchHHHHHHH
Q 005136 453 TFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVF-DRM-----PDKNEISWTVMVRG 526 (712)
Q Consensus 453 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~-----~~~~~~~~~~l~~~ 526 (712)
.|...+ .+...|..++.+..+..-. ..+-+.|-...+...+..+. +.. ...-..........
T Consensus 580 ~l~~~l------~~~p~a~~lY~~~~r~~~~------~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~ 647 (829)
T KOG2280|consen 580 SLFMTL------RNQPLALSLYRQFMRHQDR------ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANA 647 (829)
T ss_pred HHHHHH------HhchhhhHHHHHHHHhhch------hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHH
Confidence 232222 2334445555544432100 01111222222222211111 110 01112223333444
Q ss_pred HHHcCChH---HH-------HHHHHHHHH-cCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHH
Q 005136 527 LAESGYAK---ES-------INLFEEMEK-TSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVV 595 (712)
Q Consensus 527 ~~~~~~~~---~A-------~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 595 (712)
+.+..... +| +++.+.+.. .|..-..-+.+--+.-+...|+..+|.++-.+.. -||...|-.-+
T Consensus 648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~ 722 (829)
T KOG2280|consen 648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKL 722 (829)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHH
Confidence 44443311 11 122222221 2333444556666677788899999999988887 78888998899
Q ss_pred HHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHH
Q 005136 596 DMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMN 675 (712)
Q Consensus 596 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~ 675 (712)
.+++..++|++-.++-++.+. +..|.-+..+|.+.|+.++|..++-++-.+. -...+|.+.|++.+|.+
T Consensus 723 ~aLa~~~kweeLekfAkskks---PIGy~PFVe~c~~~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 723 TALADIKKWEELEKFAKSKKS---PIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAAD 791 (829)
T ss_pred HHHHhhhhHHHHHHHHhccCC---CCCchhHHHHHHhcccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHH
Confidence 999999999998888887652 4566778888999999999999887753322 57889999999999998
Q ss_pred HHHH
Q 005136 676 VRKL 679 (712)
Q Consensus 676 ~~~~ 679 (712)
..-+
T Consensus 792 ~A~~ 795 (829)
T KOG2280|consen 792 LAAE 795 (829)
T ss_pred HHHH
Confidence 7543
No 165
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.84 E-value=0.00016 Score=63.29 Aligned_cols=93 Identities=13% Similarity=-0.099 Sum_probs=75.5
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD----SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLS 661 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 661 (712)
....+..++..+...|++++|...+++. ...|+ ..++..+...+...|++++|+..+++++++.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 4566778888888999999999999887 33332 346788888899999999999999999999999999999999
Q ss_pred HHHH-------hcCCchhHHHHHHH
Q 005136 662 NIYA-------SAGRWIDAMNVRKL 679 (712)
Q Consensus 662 ~~~~-------~~g~~~eA~~~~~~ 679 (712)
.++. ..|++++|+..+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 9988 78888755555544
No 166
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.84 E-value=4.7e-05 Score=68.99 Aligned_cols=110 Identities=15% Similarity=0.066 Sum_probs=94.1
Q ss_pred HHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCC
Q 005136 559 LFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKN 635 (712)
Q Consensus 559 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~ 635 (712)
..-..+.+++.+|+..|.+++ .+.| |...|..-+.+|.+.|.++.|++-.+.. .+.|. ...|..|..+|...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc
Confidence 445667899999999999998 6788 7888888999999999999999988887 66776 7889999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCch
Q 005136 636 EQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWI 671 (712)
Q Consensus 636 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 671 (712)
+++|++.|+++++++|++......|-++-.+.+...
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999877667766655555544
No 167
>PRK15331 chaperone protein SicA; Provisional
Probab=97.83 E-value=0.00018 Score=59.71 Aligned_cols=100 Identities=17% Similarity=0.108 Sum_probs=83.1
Q ss_pred CCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHH
Q 005136 583 NIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFE-PDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVL 659 (712)
Q Consensus 583 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 659 (712)
|+.+ ........+.-+...|++++|..+|+-+ ... -+..-|..+..+|...+++++|+..|..+..+.++||....+
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 4555 3444555666677899999999999877 223 346667888888999999999999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHh
Q 005136 660 LSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 660 l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
.+.++...|+.++|+..|+..++
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999998877
No 168
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.79 E-value=3.7e-05 Score=46.02 Aligned_cols=33 Identities=24% Similarity=0.582 Sum_probs=26.9
Q ss_pred eeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 005136 282 VSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKP 314 (712)
Q Consensus 282 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 314 (712)
.+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 468888888888888888888888888888776
No 169
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.74 E-value=9.4e-05 Score=52.48 Aligned_cols=61 Identities=20% Similarity=0.190 Sum_probs=47.4
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCC
Q 005136 594 VVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHP 654 (712)
Q Consensus 594 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 654 (712)
++..+.+.|++++|...|+++ ...|+ ...+..+..++...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 567778888888888888887 45564 66677777778888999999999999998888875
No 170
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.0034 Score=59.74 Aligned_cols=266 Identities=8% Similarity=-0.036 Sum_probs=139.6
Q ss_pred HhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHH
Q 005136 326 LASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAK 405 (712)
Q Consensus 326 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 405 (712)
+.+..++..|+..+....+.... +..-|..-+..+...|++++|.--.+.-.+..+.........-+++...++..+|.
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~ 137 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAE 137 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHH
Confidence 33444555555555555555422 23334444445555566666655555544444333334444444444455555554
Q ss_pred HHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHH-HHHhccCchHHHHHHHHHHHHcCCC
Q 005136 406 ELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGE-IPNKSTFSSVL-CASASVASLEKGKDLHGKIIKLGFP 483 (712)
Q Consensus 406 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~ 483 (712)
+.++.- ..+ ....++..++....... +|.-.++..+- .++...|++++|..+-..+.+.. .
T Consensus 138 ~~~~~~-----~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~ 200 (486)
T KOG0550|consen 138 EKLKSK-----QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-A 200 (486)
T ss_pred HHhhhh-----hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-c
Confidence 444310 000 01111222222222211 13333333332 24456677777776666655532 1
Q ss_pred CchhhHHHHH--HHHHhcCChHHHHHHhccCCCCCcch---------------HHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005136 484 YDVFLGTALT--DTYAKSGDIESSRRVFDRMPDKNEIS---------------WTVMVRGLAESGYAKESINLFEEMEKT 546 (712)
Q Consensus 484 ~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~~---------------~~~l~~~~~~~~~~~~A~~~~~~~~~~ 546 (712)
.+ .+..++ .++.-.++.+.|...|++....++.. |..=..-..+.|++..|.+.|.+.+..
T Consensus 201 ~n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i 278 (486)
T KOG0550|consen 201 TN--AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI 278 (486)
T ss_pred ch--hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC
Confidence 11 111122 22334567777777777776433321 222234456788888888888888762
Q ss_pred ---CCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC
Q 005136 547 ---SITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM 614 (712)
Q Consensus 547 ---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 614 (712)
+..|+...|........+.|+..+|+.-.++.. .++| -...+..-+.++...++|++|.+-+++.
T Consensus 279 dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 279 DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123333456666667778888888888887776 3444 2344555566777788888888888876
No 171
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.69 E-value=0.0016 Score=53.95 Aligned_cols=102 Identities=8% Similarity=-0.029 Sum_probs=68.3
Q ss_pred HhccCC-CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCC
Q 005136 508 VFDRMP-DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNE-LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIK 585 (712)
Q Consensus 508 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 585 (712)
.+..+. +.+....-.+...+...|++++|.++|+-+.. +.|.. .-|..|..+|...|++++|+..|.... .+.
T Consensus 25 ~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~---~L~ 99 (157)
T PRK15363 25 MLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA---QIK 99 (157)
T ss_pred HHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH---hcC
Confidence 333444 34444445556667777888888888877776 55644 445566666677778888888877776 345
Q ss_pred C-chHHHHHHHHHhhhcCChHHHHHHHHhC
Q 005136 586 P-NGRHYTCVVDMLSRSGRLSEAEDFINSM 614 (712)
Q Consensus 586 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 614 (712)
| |+..+-.++.++...|+.+.|.+.|+..
T Consensus 100 ~ddp~~~~~ag~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 100 IDAPQAPWAAAECYLACDNVCYAIKALKAV 129 (157)
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5 6677777777888888887777777754
No 172
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.66 E-value=0.00011 Score=55.39 Aligned_cols=80 Identities=16% Similarity=0.276 Sum_probs=52.8
Q ss_pred cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHH
Q 005136 530 SGYAKESINLFEEMEKTSIT-PNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEA 607 (712)
Q Consensus 530 ~~~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 607 (712)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|+.+++. . ...| +......++.++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 57788888888888874321 2334455577788888888888888877 2 2233 344555667888888888888
Q ss_pred HHHHHh
Q 005136 608 EDFINS 613 (712)
Q Consensus 608 ~~~~~~ 613 (712)
++++++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 887764
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.65 E-value=0.003 Score=60.52 Aligned_cols=168 Identities=8% Similarity=0.172 Sum_probs=72.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHH
Q 005136 419 WSAIISGYLEHKQFDLVFAVFNEMLLS----GEIPN-KSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALT 493 (712)
Q Consensus 419 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 493 (712)
|......|-..+++++|...|.+.... +-+.. ...|......+ +..++++|...+.+. +
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A---------------~ 101 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKA---------------I 101 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHH---------------H
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHH---------------H
Confidence 344566666677777777777665331 11110 11222222222 222444444444443 2
Q ss_pred HHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHc-CChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHhcccC
Q 005136 494 DTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAES-GYAKESINLFEEMEKT----SITPN--ELTILSVLFACSHSG 566 (712)
Q Consensus 494 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g 566 (712)
..|...|++..|-..+.. +...|... |++++|++.|++..+. | .+. ...+..+...+.+.|
T Consensus 102 ~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~ 169 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLG 169 (282)
T ss_dssp HHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhC
Confidence 345555555555444333 34445555 5666666666655432 1 111 123344455555666
Q ss_pred cHHHHHHHHHhcchhcC----CCCchH-HHHHHHHHhhhcCChHHHHHHHHhC
Q 005136 567 LVDKGLKYFNSMEPIYN----IKPNGR-HYTCVVDMLSRSGRLSEAEDFINSM 614 (712)
Q Consensus 567 ~~~~a~~~~~~~~~~~~----~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 614 (712)
++++|.++|+++....- .+.+.. .+...+-++...|+...|...+++.
T Consensus 170 ~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 170 RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp -HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666665542210 111111 1222333444556666666666554
No 174
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.65 E-value=3.4e-05 Score=45.64 Aligned_cols=33 Identities=24% Similarity=0.443 Sum_probs=31.0
Q ss_pred HHHHhccCCCCCchHHHHHHHHHhcCCchhHHH
Q 005136 643 VKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMN 675 (712)
Q Consensus 643 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~ 675 (712)
++++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999963
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.64 E-value=0.0011 Score=68.45 Aligned_cols=66 Identities=17% Similarity=0.071 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 619 DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 619 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
++..+..+.......|++++|...++++++++| +...|..+|+++...|+.++|.+.+++....++
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 345555554455566777778777777777777 366777777777777887778777777766543
No 176
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.0007 Score=64.13 Aligned_cols=279 Identities=14% Similarity=0.059 Sum_probs=165.1
Q ss_pred HHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCC---CCcccHHHHHHHHHhcCChhHH
Q 005136 359 DLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPK---RNDVSWSAIISGYLEHKQFDLV 435 (712)
Q Consensus 359 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 435 (712)
..+.+..++..|+..+....+..+.+..-|..-...+...++++++.--.+.-.+ ...........++...++..+|
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHH
Confidence 3455667778888888888888877777777777777777888777554433332 2233444445555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCC-CchhhHHH-HHHHHHhcCChHHHHHHhccCC
Q 005136 436 FAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFP-YDVFLGTA-LTDTYAKSGDIESSRRVFDRMP 513 (712)
Q Consensus 436 ~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~ 513 (712)
.+.++.- ..+ ....+...++.+...... |.-..+.. -..++...|+.++|..+--.+.
T Consensus 137 ~~~~~~~---------~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~il 196 (486)
T KOG0550|consen 137 EEKLKSK---------QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDIL 196 (486)
T ss_pred HHHhhhh---------hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHH
Confidence 5555411 101 011122222222222211 22222222 2345667788888888777666
Q ss_pred CCCcch-HHHHHH--HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH---HHH----------HhcccCcHHHHHHHHHh
Q 005136 514 DKNEIS-WTVMVR--GLAESGYAKESINLFEEMEKTSITPNELTILS---VLF----------ACSHSGLVDKGLKYFNS 577 (712)
Q Consensus 514 ~~~~~~-~~~l~~--~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~---l~~----------~~~~~g~~~~a~~~~~~ 577 (712)
+.|... +..+++ ++...++.+.|...|++.+. +.|+...-.. ... -..+.|++..|.+.|.+
T Consensus 197 kld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yte 274 (486)
T KOG0550|consen 197 KLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTE 274 (486)
T ss_pred hcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHH
Confidence 555443 222332 34456788889999988887 5566543221 122 22367888899988888
Q ss_pred cchhcCCCC-----chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccC
Q 005136 578 MEPIYNIKP-----NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLA 650 (712)
Q Consensus 578 ~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 650 (712)
.. ++.| +...|...+....+.|+..+|+.-.+.. .+.|. ...+..-..++...++|++|.+-++++.+..
T Consensus 275 al---~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 275 AL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred hh---cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77 4444 3455666677778889999988888776 43333 2233334445677888999999999988876
Q ss_pred CCCCchHHHHHHH
Q 005136 651 EEHPAGYVLLSNI 663 (712)
Q Consensus 651 p~~~~~~~~l~~~ 663 (712)
.+ +.....|..+
T Consensus 352 ~s-~e~r~~l~~A 363 (486)
T KOG0550|consen 352 KD-CEIRRTLREA 363 (486)
T ss_pred cc-cchHHHHHHH
Confidence 55 4444444433
No 177
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.61 E-value=0.0022 Score=66.44 Aligned_cols=140 Identities=14% Similarity=0.093 Sum_probs=95.8
Q ss_pred CCCcchHHHHHHHHHHc--C---ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhccc--------CcHHHHHHHHHhcc
Q 005136 514 DKNEISWTVMVRGLAES--G---YAKESINLFEEMEKTSITPNE-LTILSVLFACSHS--------GLVDKGLKYFNSME 579 (712)
Q Consensus 514 ~~~~~~~~~l~~~~~~~--~---~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~--------g~~~~a~~~~~~~~ 579 (712)
..+...|...+.+.... + +...|+.+|++.++ ..|+. ..+..+..++... ++...+.+..++..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 34555666666554322 2 35678888888888 56765 3343333332211 22344455554433
Q ss_pred hhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCc
Q 005136 580 PIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPA 655 (712)
Q Consensus 580 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 655 (712)
.......++..+..++-.+...|++++|...++++ ...|+...|..+...+...|+.++|.+.+++++.++|.+|.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 11112335677888887778889999999999998 66788888888888899999999999999999999999885
No 178
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.60 E-value=0.0012 Score=57.93 Aligned_cols=127 Identities=17% Similarity=0.211 Sum_probs=86.4
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHH
Q 005136 518 ISWTVMVRGLAESGYAKESINLFEEMEKTSITPN--ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCV 594 (712)
Q Consensus 518 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 594 (712)
..+..+...+...|++++|...+++..+....+. ...+..+...+.+.|++++|...+++..+ ..| +...+..+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l 112 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHHH
Confidence 3466677777888888888888888876433222 35677777888888899999888888873 355 56667777
Q ss_pred HHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 005136 595 VDMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAG 668 (712)
Q Consensus 595 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 668 (712)
+.++...|+...+..-++.. ...+++|.+.+++++..+|++ +..++..+...|
T Consensus 113 g~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 78887777766655333221 123677888999999888886 444444444443
No 179
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.56 E-value=0.08 Score=50.37 Aligned_cols=211 Identities=14% Similarity=0.149 Sum_probs=123.6
Q ss_pred hccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC-----CCCcch--HHHHHHHH---HHcC
Q 005136 462 ASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP-----DKNEIS--WTVMVRGL---AESG 531 (712)
Q Consensus 462 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~--~~~l~~~~---~~~~ 531 (712)
.+.|+.+.|..+-...-..- +.-.-....+++..+..|+++.|+++++.-. ++++.- --.|+.+- .-..
T Consensus 165 qr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 165 QRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred HhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 34455555555444443321 2223344455555666666666666665433 222221 11122111 1122
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHH
Q 005136 532 YAKESINLFEEMEKTSITPNELT-ILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDF 610 (712)
Q Consensus 532 ~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 610 (712)
+...|...-.+..+ +.|+..- -..-..++.+.|+..++-.+++.+- ...|.+..... ..+.+.|+. ++.-
T Consensus 244 dp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aW---K~ePHP~ia~l--Y~~ar~gdt--a~dR 314 (531)
T COG3898 244 DPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAW---KAEPHPDIALL--YVRARSGDT--ALDR 314 (531)
T ss_pred ChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHH---hcCCChHHHHH--HHHhcCCCc--HHHH
Confidence 45555555555555 6777633 3445567888899999999998886 23555554322 223455553 3333
Q ss_pred HHhC----CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc-CCchhHHHHHHHHHhC
Q 005136 611 INSM----PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASA-GRWIDAMNVRKLMTEK 683 (712)
Q Consensus 611 ~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~eA~~~~~~~~~~ 683 (712)
+++. ..+|+ ......+..+....|++..|..-.+.+....|. ..+|..|+.+-... |+..+++.++-+..+.
T Consensus 315 lkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 315 LKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 3332 23444 555666677777889999999888888888887 56888888887755 9999999998877764
No 180
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.56 E-value=0.0012 Score=52.77 Aligned_cols=91 Identities=15% Similarity=0.006 Sum_probs=66.5
Q ss_pred HHHHHHhhhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC---CCchHHHHHHH
Q 005136 592 TCVVDMLSRSGRLSEAEDFINSM---PFEPD--SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEE---HPAGYVLLSNI 663 (712)
Q Consensus 592 ~~l~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~ 663 (712)
..++.++-..|+.++|+.+|++. +.... ...+..+...+...|+.++|..++++.....|+ +......++.+
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence 34566777788888888888775 22221 345566677788888888888888888887787 66777778888
Q ss_pred HHhcCCchhHHHHHHHHHh
Q 005136 664 YASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 664 ~~~~g~~~eA~~~~~~~~~ 682 (712)
+...|+.+||++.+-..+.
T Consensus 85 L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 8888888888887765443
No 181
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.56 E-value=0.00094 Score=51.04 Aligned_cols=80 Identities=18% Similarity=0.163 Sum_probs=67.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHhhHHHHHHHHhccc--------chHHHHHHHHHHHHhCCCCCccHH
Q 005136 152 WTAAICGFVQNGFSFEALKLFLKLLESGV-KPNEVTFSSICKACAEIN--------DFRLGLSVFGLIFKAGFEKHVSVC 222 (712)
Q Consensus 152 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 222 (712)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ..-..+.+++.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34566677778999999999999999999 899999999999877643 245678899999999999999999
Q ss_pred HHHHHHHHc
Q 005136 223 NSLITLSLK 231 (712)
Q Consensus 223 ~~li~~~~~ 231 (712)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988764
No 182
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.56 E-value=0.021 Score=54.82 Aligned_cols=100 Identities=14% Similarity=0.154 Sum_probs=52.5
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHHcCCCC-----cH-HHHHHHHHHHHhcCChHHHHHHHHhhhcCCCC--c---ee
Q 005136 318 CFSIVLSALASLKALRSGMHVHAHVLKIGIEK-----DV-FISNALIDLYSKCGETKDGRLVFDSIVEKDVA--H---VV 386 (712)
Q Consensus 318 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~---~~ 386 (712)
++..+...+.+.|++++|.++++++....... +. ..+...+-++...|+...|...|++....++. + ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 34455556666777777777777766543221 11 12233344666678888888888888766542 1 22
Q ss_pred eHHHHHHHHhc--cCChhhHHHHhhcCCCCCcc
Q 005136 387 SWNSMIGGYGL--NGQMEEAKELFDNMPKRNDV 417 (712)
Q Consensus 387 ~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~ 417 (712)
....|+.++-. ...++.++.-|+.+.+-|..
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w 269 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNW 269 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS---HH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccCccHHH
Confidence 33445555433 23455565555555554443
No 183
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.55 E-value=0.00063 Score=52.85 Aligned_cols=90 Identities=18% Similarity=0.213 Sum_probs=45.8
Q ss_pred HHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCC
Q 005136 559 LFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKN 635 (712)
Q Consensus 559 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 635 (712)
...+...|++++|...++++.+ ..| +...+..++.++...|++++|.+.+++. ...| +...+..+...+...|+
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALE---LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 3334444555555555554441 122 2344455555555556666666655554 2222 22344555555666666
Q ss_pred HHHHHHHHHHHhccCC
Q 005136 636 EQIAERAVKNLWKLAE 651 (712)
Q Consensus 636 ~~~a~~~~~~~~~~~p 651 (712)
++.|...+.++.+..|
T Consensus 84 ~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 84 YEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHccCC
Confidence 6666666666665554
No 184
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.54 E-value=0.00012 Score=42.65 Aligned_cols=30 Identities=30% Similarity=0.548 Sum_probs=22.8
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 005136 151 SWTAAICGFVQNGFSFEALKLFLKLLESGV 180 (712)
Q Consensus 151 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 180 (712)
+|+.++.+|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677777777777777777788877777653
No 185
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.54 E-value=0.12 Score=52.99 Aligned_cols=62 Identities=13% Similarity=0.062 Sum_probs=33.9
Q ss_pred CCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcc
Q 005136 348 EKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDV 417 (712)
Q Consensus 348 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 417 (712)
+.+....-.+.+++.+.|.-++|.+.|-+.... ..-+..|...+++.+|.++-++..-|.+.
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p--------kaAv~tCv~LnQW~~avelaq~~~l~qv~ 910 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLRRSLP--------KAAVHTCVELNQWGEAVELAQRFQLPQVQ 910 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHhccCc--------HHHHHHHHHHHHHHHHHHHHHhccchhHH
Confidence 344455555666666666666666555433211 23345556666666666666665544433
No 186
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.53 E-value=0.085 Score=50.21 Aligned_cols=212 Identities=13% Similarity=0.098 Sum_probs=141.1
Q ss_pred ccCchHHHHHHHHHHHHcCCCCchhh--HHHHHHHHHhcCChHHHHHHhccCCCC---CcchHHHHHHHHHHcCChHHHH
Q 005136 463 SVASLEKGKDLHGKIIKLGFPYDVFL--GTALTDTYAKSGDIESSRRVFDRMPDK---NEISWTVMVRGLAESGYAKESI 537 (712)
Q Consensus 463 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~ 537 (712)
-.|+++.|.+-|+.|.+. |.... ...|.---.+.|..+.|.++-++.... -...+...+...+..|+|+.|+
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHH
Confidence 457777777777776541 11111 122222335778899998888776632 3456888999999999999999
Q ss_pred HHHHHHHHcC-CCCCHHH--HHHHHHHh--c-ccCcHHHHHHHHHhcchhcCCCCchH-HHHHHHHHhhhcCChHHHHHH
Q 005136 538 NLFEEMEKTS-ITPNELT--ILSVLFAC--S-HSGLVDKGLKYFNSMEPIYNIKPNGR-HYTCVVDMLSRSGRLSEAEDF 610 (712)
Q Consensus 538 ~~~~~~~~~~-~~p~~~~--~~~l~~~~--~-~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~ 610 (712)
++++.-.+.. +.++..- -..|+.+- . -..+...|...-.+.. .+.|+.. .-..-..+|.+.|+..++-.+
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~---KL~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEAN---KLAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh---hcCCccchHHHHHHHHHHhccchhhhhhH
Confidence 9999876643 3444422 22233221 1 1234556666555544 5677643 334456789999999999999
Q ss_pred HHhC-CCCCCHHHHHHHHHHHhhcCCHHHH-HHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 611 INSM-PFEPDSNAWASLLSGCKTYKNEQIA-ERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 611 ~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
++.+ +..|.+..+.... +.+.|+.... .+-.+++..+.|+|.+.....+.+-...|.+..|+.--+....
T Consensus 286 lE~aWK~ePHP~ia~lY~--~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r 357 (531)
T COG3898 286 LETAWKAEPHPDIALLYV--RARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR 357 (531)
T ss_pred HHHHHhcCCChHHHHHHH--HhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 9998 6678887765443 4467765333 2234555668999999999999999999999988876665544
No 187
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.53 E-value=0.00059 Score=63.62 Aligned_cols=86 Identities=16% Similarity=0.008 Sum_probs=48.3
Q ss_pred hhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC---CchHHHHHHHHHhcCCc
Q 005136 599 SRSGRLSEAEDFINSM-PFEPD----SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH---PAGYVLLSNIYASAGRW 670 (712)
Q Consensus 599 ~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~ 670 (712)
.+.|++++|...|+.. ...|+ +..+..+...|...|++++|...|+++++..|++ +.++..++.++...|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 4445666666555554 22232 2344445555666666666666666666665553 34445556666666666
Q ss_pred hhHHHHHHHHHhCC
Q 005136 671 IDAMNVRKLMTEKG 684 (712)
Q Consensus 671 ~eA~~~~~~~~~~~ 684 (712)
++|+.+++++++.-
T Consensus 234 ~~A~~~~~~vi~~y 247 (263)
T PRK10803 234 AKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHHHHHC
Confidence 66666666665543
No 188
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.51 E-value=0.0004 Score=65.53 Aligned_cols=257 Identities=13% Similarity=0.050 Sum_probs=149.5
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCchHHHHHHHHHHH--H--cCCC-CchhhHHHHHHH
Q 005136 425 GYLEHKQFDLVFAVFNEMLLSGEIPNK----STFSSVLCASASVASLEKGKDLHGKII--K--LGFP-YDVFLGTALTDT 495 (712)
Q Consensus 425 ~~~~~~~~~~a~~~~~~~~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~--~--~~~~-~~~~~~~~l~~~ 495 (712)
-+|+.|+......+|+..++.| ..|. ..|..+-.+|.-.+++++|.++...=. . .|-. -.......|...
T Consensus 26 RLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 3566666666677777777766 2232 345555666667777777776654311 0 1110 011222233333
Q ss_pred HHhcCChHHHHHHhccCCC---------CCcchHHHHHHHHHHcCC--------------------hHHHHHHHHHHHH-
Q 005136 496 YAKSGDIESSRRVFDRMPD---------KNEISWTVMVRGLAESGY--------------------AKESINLFEEMEK- 545 (712)
Q Consensus 496 ~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~~~~- 545 (712)
+--.|.+++|...-.+-.. .....+..+...|...|+ .+.|.+.|.+-.+
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555443222110 011223334444443331 2234444433221
Q ss_pred ---cCCC-CCHHHHHHHHHHhcccCcHHHHHHHHHhc---chhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC---
Q 005136 546 ---TSIT-PNELTILSVLFACSHSGLVDKGLKYFNSM---EPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM--- 614 (712)
Q Consensus 546 ---~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--- 614 (712)
.|-. .-...|..|...|.-.|+++.|+..-+.- .+.+|-.- -...+..+++++.-.|+++.|.+.|+..
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 1111 11234666666777789999998765532 22333333 3557788999999999999999998864
Q ss_pred ----C-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC------CCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 615 ----P-FEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLA------EEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 615 ----~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
+ .......--++.+.|.-..+++.|+.+..+=+.+. .....++.+|+.++...|..++|+.+.+.-++
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 1 12234455567777777888999999888765532 22456899999999999999999999887665
No 189
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.47 E-value=0.0092 Score=55.35 Aligned_cols=56 Identities=13% Similarity=0.068 Sum_probs=47.5
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhccCCCC---CchHHHHHHHHHhcCCchhHHHHHHHHH
Q 005136 626 LLSGCKTYKNEQIAERAVKNLWKLAEEH---PAGYVLLSNIYASAGRWIDAMNVRKLMT 681 (712)
Q Consensus 626 l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 681 (712)
+...|.+.|++..|..-++.+++..|+. ++++..++.+|...|..++|.++...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3444788999999999999999998885 4678888999999999999999877553
No 190
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.46 E-value=0.00017 Score=51.70 Aligned_cols=48 Identities=17% Similarity=0.328 Sum_probs=24.5
Q ss_pred ccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC
Q 005136 564 HSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM 614 (712)
Q Consensus 564 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 614 (712)
..|++++|+++|+++... .| +......++.+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345555555555555422 33 4445555555555555555555555555
No 191
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.43 E-value=0.0032 Score=52.82 Aligned_cols=102 Identities=19% Similarity=0.266 Sum_probs=91.1
Q ss_pred cCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC--CCch
Q 005136 582 YNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM---PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEE--HPAG 656 (712)
Q Consensus 582 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~ 656 (712)
....|+...-..|+.++.+.|+..||...|+.. ....|......+..+....++...|...++++.+..|. +|..
T Consensus 83 ~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 83 LAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred HhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 345788888889999999999999999999987 34667888889999999999999999999999998887 6888
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 657 YVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 657 ~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
...++..|...|++.+|...|+..++-
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 999999999999999999999988774
No 192
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.41 E-value=0.0002 Score=41.61 Aligned_cols=30 Identities=27% Similarity=0.511 Sum_probs=23.3
Q ss_pred eHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005136 283 SWSVMIARYNQSGYPEEAFRLFRQMTRYSF 312 (712)
Q Consensus 283 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 312 (712)
+|+.++.+|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677888888888888888888888877663
No 193
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.38 E-value=0.0046 Score=58.96 Aligned_cols=133 Identities=11% Similarity=0.145 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-hcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHH
Q 005136 519 SWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFA-CSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDM 597 (712)
Q Consensus 519 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 597 (712)
+|..++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|.++|+...+. +..+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 56777777777777888888888887532 2233444433333 33356667788888887744 23366777777888
Q ss_pred hhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCC
Q 005136 598 LSRSGRLSEAEDFINSM-PFEPD----SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHP 654 (712)
Q Consensus 598 ~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 654 (712)
+.+.|+.+.|..+|++. ..-|. ...|...+..-.+.|+.+....+.+++.+..|++.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 88888888888888876 22333 34777788777888888888888888888877743
No 194
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.38 E-value=0.0026 Score=48.69 Aligned_cols=79 Identities=15% Similarity=0.140 Sum_probs=66.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccC--------ChhhHHHHHHHHHHcCCCCcHHHHH
Q 005136 285 SVMIARYNQSGYPEEAFRLFRQMTRYSF-KPNTSCFSIVLSALASLK--------ALRSGMHVHAHVLKIGIEKDVFISN 355 (712)
Q Consensus 285 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 355 (712)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +....+.+++.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456667777999999999999999999 999999999999988643 3456678899999999999999999
Q ss_pred HHHHHHHh
Q 005136 356 ALIDLYSK 363 (712)
Q Consensus 356 ~l~~~~~~ 363 (712)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99887654
No 195
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.38 E-value=0.00038 Score=50.06 Aligned_cols=65 Identities=15% Similarity=0.234 Sum_probs=47.7
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcC-CHHHHHHHHHHHhccCC
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYK-NEQIAERAVKNLWKLAE 651 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p 651 (712)
++..|..++..+...|++++|+..|++. ...|+ ...+..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3556777777888888888888887776 44454 556666666777777 68888888888888776
No 196
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.36 E-value=0.023 Score=57.40 Aligned_cols=265 Identities=13% Similarity=0.141 Sum_probs=133.9
Q ss_pred HHHHHHHHHHccCChHHHHHHhhhCC-----------CCCcccHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCCHhh
Q 005136 120 SWTALISGFMKHGRVEESMWYFERNP-----------FQNVISWTAAICGFVQNGF--SFEALKLFLKLLESGVKPNEVT 186 (712)
Q Consensus 120 ~~~~l~~~~~~~g~~~~a~~~~~~~~-----------~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~ 186 (712)
.+.+-+..|...|.+++|.+.---.. .-+...++..-.+|.+-++ +-+.+.-+++|+++|-.|+..
T Consensus 558 p~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i- 636 (1081)
T KOG1538|consen 558 PQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDL- 636 (1081)
T ss_pred cccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH-
Confidence 34444556777787777765421110 1122334445555654433 344555567777888777765
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCH
Q 005136 187 FSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDL 266 (712)
Q Consensus 187 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 266 (712)
.+...|+-.|.+.+|-++|.+ .|.. |..+.+|-....+|.|.+++.. |.-
T Consensus 637 --LlA~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~~-------------------g~~ 686 (1081)
T KOG1538|consen 637 --LLADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLGS-------------------GDP 686 (1081)
T ss_pred --HHHHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhhc-------------------CCh
Confidence 345566777788887777653 2211 2334444444555555554432 211
Q ss_pred HHHHHHHhhCCC--CCceeHHHHHHHHHhcCChhHHHHHHHH------HHhCCC---CCCHHHHHHHHHHHhccCChhhH
Q 005136 267 GEARRIFDEMPE--RNEVSWSVMIARYNQSGYPEEAFRLFRQ------MTRYSF---KPNTSCFSIVLSALASLKALRSG 335 (712)
Q Consensus 267 ~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~------m~~~~~---~p~~~~~~~ll~~~~~~~~~~~a 335 (712)
++-..+.++-.+ .++.-=......+...|+.++|..+.-+ +.+.+- ..+..+...+...+.+...+..|
T Consensus 687 ~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLA 766 (1081)
T KOG1538|consen 687 KEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLA 766 (1081)
T ss_pred HHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchH
Confidence 111111111000 0000001122333444555555443211 111111 12233444444444555666666
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCC
Q 005136 336 MHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRN 415 (712)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 415 (712)
.++|..|-+. ..+++.....+++++|..+-++..+.- ...|-...+-++...++++|
T Consensus 767 aeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEA----------- 823 (1081)
T KOG1538|consen 767 AEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEA----------- 823 (1081)
T ss_pred HHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHH-----------
Confidence 6776665432 345666777777777777766655443 34444555556666666666
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 005136 416 DVSWSAIISGYLEHKQFDLVFAVFNEMLLS 445 (712)
Q Consensus 416 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 445 (712)
-.+|.+.|+-.+|..+++.+...
T Consensus 824 -------qkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 824 -------QKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred -------HHHHHHhcchHHHHHHHHHhhhh
Confidence 34556677777777777776554
No 197
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.29 E-value=0.00037 Score=44.42 Aligned_cols=42 Identities=21% Similarity=0.412 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 005136 621 NAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSN 662 (712)
Q Consensus 621 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 662 (712)
.++..+...|.+.|++++|+++++++++.+|+|+.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 456778888999999999999999999999999999888874
No 198
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.24 E-value=0.0012 Score=64.60 Aligned_cols=63 Identities=10% Similarity=-0.091 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCch---HHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 620 SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAG---YVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 620 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
...+..+..+|...|++++|+..++++++++|+++.+ |+.++.+|..+|+.++|++.+++.++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444422 44444444444444444444444444
No 199
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.24 E-value=0.0066 Score=48.60 Aligned_cols=93 Identities=14% Similarity=0.168 Sum_probs=64.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHh
Q 005136 522 VMVRGLAESGYAKESINLFEEMEKTSITPNE--LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDML 598 (712)
Q Consensus 522 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 598 (712)
.+..++-..|+.++|+.+|++....|+.... ..+..+..++...|++++|+.+|++....+.-.+ +......++.++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 3456677888888999999888888766553 4566777788888888888888888774422111 223333455667
Q ss_pred hhcCChHHHHHHHHhC
Q 005136 599 SRSGRLSEAEDFINSM 614 (712)
Q Consensus 599 ~~~g~~~~A~~~~~~~ 614 (712)
...|+.++|++.+-..
T Consensus 86 ~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEA 101 (120)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 7888888888776543
No 200
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.23 E-value=0.22 Score=48.14 Aligned_cols=108 Identities=12% Similarity=0.174 Sum_probs=80.1
Q ss_pred cHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhH
Q 005136 220 SVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEE 299 (712)
Q Consensus 220 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 299 (712)
.+.+..|.-+...|+...|.++-.+..-|+..-|...+.+++..++|++-..+... ++++.-|..++..|.+.|+..+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHH
Confidence 45556667777888888888888888778888888888888888888888876554 5677888888888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHH
Q 005136 300 AFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVH 339 (712)
Q Consensus 300 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 339 (712)
|..+...+ ++ ..-+..|.+.|++.+|.+.-
T Consensus 256 A~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 256 ASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHHHH
Confidence 88877662 11 33445556667776665543
No 201
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.14 Score=53.90 Aligned_cols=174 Identities=13% Similarity=0.132 Sum_probs=89.3
Q ss_pred HHHHHHHccCChHHHHHHhhhCCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccc
Q 005136 123 ALISGFMKHGRVEESMWYFERNPFQNV---ISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEIND 199 (712)
Q Consensus 123 ~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~ 199 (712)
.-+..+.+...++.|..+-.....+.. .......+-+.+.|++++|.+.|-+-+.. +.|. .++.-+....+
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~ 412 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQR 412 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHH
Confidence 345555666666666666544322111 12223333445667777776666655432 2222 33444455555
Q ss_pred hHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCCCCcc-hHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 005136 200 FRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVV-SWTVILDVFIEMGDLGEARRIFDEMPE 278 (712)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~ 278 (712)
...--.+++.+.+.|+. +...-..|+.+|.+.++.+...++.+...+.... -....+..+.+.+-+++|..+-.....
T Consensus 413 IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~ 491 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK 491 (933)
T ss_pred HHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc
Confidence 55555666666666643 2333355667777777777766666655421111 233445555555555555555444333
Q ss_pred CCceeHHHHHHHHHhcCChhHHHHHHHHH
Q 005136 279 RNEVSWSVMIARYNQSGYPEEAFRLFRQM 307 (712)
Q Consensus 279 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 307 (712)
+...... .+-..+++++|++.+..|
T Consensus 492 -he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 492 -HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred -CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 2222222 233456677777777654
No 202
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.19 E-value=0.019 Score=57.96 Aligned_cols=202 Identities=16% Similarity=0.164 Sum_probs=101.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCC
Q 005136 436 FAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDK 515 (712)
Q Consensus 436 ~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 515 (712)
..-++++.+.|-.|+.... ...|+-.|++.+|.++|.+- |.. +.-+++|.....++.|.+++......
T Consensus 620 i~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~---G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~ 687 (1081)
T KOG1538|consen 620 ISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRS---GHE------NRALEMYTDLRMFDYAQEFLGSGDPK 687 (1081)
T ss_pred HHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHc---Cch------hhHHHHHHHHHHHHHHHHHhhcCChH
Confidence 5566778888877876543 34566778888887777543 211 12334444444555555554443311
Q ss_pred --------------CcchHHHHHHHHHHcCChHHHHHHHHH------HHHcCCCC---CHHHHHHHHHHhcccCcHHHHH
Q 005136 516 --------------NEISWTVMVRGLAESGYAKESINLFEE------MEKTSITP---NELTILSVLFACSHSGLVDKGL 572 (712)
Q Consensus 516 --------------~~~~~~~l~~~~~~~~~~~~A~~~~~~------~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~ 572 (712)
+..--.+....+...|+.++|+.+.-+ +.+-+-+. +..+...+...+.+...+..|-
T Consensus 688 eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAa 767 (1081)
T KOG1538|consen 688 EKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAA 767 (1081)
T ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHH
Confidence 111112233444555555555544321 11111111 2223333333344455555666
Q ss_pred HHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC
Q 005136 573 KYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSMP-FEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAE 651 (712)
Q Consensus 573 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 651 (712)
++|..+- | ...+++.+...++|++|..+-++.+ ..|+. +.....-+....++++|.+.
T Consensus 768 eIF~k~g-------D---~ksiVqlHve~~~W~eAFalAe~hPe~~~dV--y~pyaqwLAE~DrFeEAqkA--------- 826 (1081)
T KOG1538|consen 768 EIFLKMG-------D---LKSLVQLHVETQRWDEAFALAEKHPEFKDDV--YMPYAQWLAENDRFEEAQKA--------- 826 (1081)
T ss_pred HHHHHhc-------c---HHHHhhheeecccchHhHhhhhhCccccccc--cchHHHHhhhhhhHHHHHHH---------
Confidence 6666554 1 1245566666777777777766663 23331 22222333445555555553
Q ss_pred CCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 652 EHPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 652 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
+.++|+..||..+++++-.
T Consensus 827 ------------fhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 827 ------------FHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred ------------HHHhcchHHHHHHHHHhhh
Confidence 4455667777777766543
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.19 E-value=0.0057 Score=57.15 Aligned_cols=101 Identities=10% Similarity=0.048 Sum_probs=68.4
Q ss_pred HHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 005136 555 ILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD----SNAWASLLS 628 (712)
Q Consensus 555 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~ 628 (712)
|...+....+.|++++|+..|+.+...+.-.+ .+..+..++.+|...|++++|...|+++ ...|+ ...+..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44434333455777777777777764421111 1356677888888888888888888877 22232 555556666
Q ss_pred HHhhcCCHHHHHHHHHHHhccCCCCCc
Q 005136 629 GCKTYKNEQIAERAVKNLWKLAEEHPA 655 (712)
Q Consensus 629 ~~~~~g~~~~a~~~~~~~~~~~p~~~~ 655 (712)
.+...|+.+.|...++++++..|++..
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 677889999999999999999998653
No 204
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.15 E-value=0.012 Score=51.49 Aligned_cols=92 Identities=13% Similarity=0.165 Sum_probs=50.0
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--CHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHH
Q 005136 151 SWTAAICGFVQNGFSFEALKLFLKLLESGVKP--NEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITL 228 (712)
Q Consensus 151 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 228 (712)
.|..+...+...|++++|+..|++.......| ...++..+..++...|++++|...++...... +.....+..+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 44555555666666666666666665542222 12355666666666777777777776666542 2223344444444
Q ss_pred HH-------ccCChHHHHHHHh
Q 005136 229 SL-------KMGEVDLARSVFD 243 (712)
Q Consensus 229 ~~-------~~~~~~~a~~~~~ 243 (712)
+. ..|+++.|...++
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHH
Confidence 44 4555554444433
No 205
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.14 E-value=0.009 Score=59.29 Aligned_cols=121 Identities=13% Similarity=0.080 Sum_probs=85.3
Q ss_pred CCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHc--CCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC----CCcc
Q 005136 445 SGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKL--GFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPD----KNEI 518 (712)
Q Consensus 445 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~ 518 (712)
.+.+.+...+..++..+....+++.+..++.+.+.. ....-..+..++++.|...|..+.+..+++.=.. ||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 445666777777777777777788888887777754 3333344556788888888888888887776553 6777
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhccc
Q 005136 519 SWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHS 565 (712)
Q Consensus 519 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 565 (712)
+++.|+..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888887777766666666665555555443
No 206
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.14 E-value=0.44 Score=49.73 Aligned_cols=341 Identities=14% Similarity=0.090 Sum_probs=165.4
Q ss_pred hCCCCCccHHH-----HHHHHHHccCChHHHHHHHhhcCCCC---cchHHHHHHHHHhcC---CHHHHHHHHhhCCC--C
Q 005136 213 AGFEKHVSVCN-----SLITLSLKMGEVDLARSVFDRMEKRD---VVSWTVILDVFIEMG---DLGEARRIFDEMPE--R 279 (712)
Q Consensus 213 ~~~~~~~~~~~-----~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~--~ 279 (712)
.|++.+..-|. .+++-+...+.+..|.++.+.+..|. ...|......+.+.. +-+-+..+-+++.. .
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~ 505 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT 505 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC
Confidence 35565554443 45666777788888888888777665 345555555555542 23334444444444 3
Q ss_pred CceeHHHHHHHHHhcCChhHHHHHHHHHHhCCC----CCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHH
Q 005136 280 NEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSF----KPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISN 355 (712)
Q Consensus 280 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 355 (712)
...+|..+.......|+.+-|..+++.=...+. -.+..-+...+.-+...|+.+....++-.+...- +...+
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l- 581 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSL- 581 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHH-
Confidence 456777777777788888888887754221110 0111223334444444555555544444443320 11111
Q ss_pred HHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHH
Q 005136 356 ALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLV 435 (712)
Q Consensus 356 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 435 (712)
.....+...|..+|.+..+..- -..+- .+-..++..++..-|..
T Consensus 582 -----~~~l~~~p~a~~lY~~~~r~~~-----~~~l~-d~y~q~dn~~~~a~~~~------------------------- 625 (829)
T KOG2280|consen 582 -----FMTLRNQPLALSLYRQFMRHQD-----RATLY-DFYNQDDNHQALASFHL------------------------- 625 (829)
T ss_pred -----HHHHHhchhhhHHHHHHHHhhc-----hhhhh-hhhhcccchhhhhhhhh-------------------------
Confidence 1111223334444444332110 00000 11111111111000000
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHH----------HHHHHHHHH-cCCCCchhhHHHHHHHHHhcCChHH
Q 005136 436 FAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKG----------KDLHGKIIK-LGFPYDVFLGTALTDTYAKSGDIES 504 (712)
Q Consensus 436 ~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a----------~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~ 504 (712)
...|..-...|..|+.. ....+|++.....-. ..+.+.+.. .|.....-+.+.-+.-+...|+..+
T Consensus 626 q~~~~~~~~~~r~~~lk---~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~ 702 (829)
T KOG2280|consen 626 QASYAAETIEGRIPALK---TAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKR 702 (829)
T ss_pred hhhhhhhhhcccchhHH---HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHH
Confidence 00000000112223222 222233332221111 111112221 1222333333444444566778888
Q ss_pred HHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCC
Q 005136 505 SRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNI 584 (712)
Q Consensus 505 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 584 (712)
|.++-.+..-||-..|-.-+.+++..++|++-.++-+.. -+..-|.-.+.+|.+.|+.++|.+++-++. +.
T Consensus 703 a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAksk------ksPIGy~PFVe~c~~~~n~~EA~KYiprv~---~l 773 (829)
T KOG2280|consen 703 AEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSK------KSPIGYLPFVEACLKQGNKDEAKKYIPRVG---GL 773 (829)
T ss_pred HHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhcc------CCCCCchhHHHHHHhcccHHHHhhhhhccC---Ch
Confidence 888888877777777777777778878777655544332 124456667777788888888877776654 11
Q ss_pred CCchHHHHHHHHHhhhcCChHHHHHHHH
Q 005136 585 KPNGRHYTCVVDMLSRSGRLSEAEDFIN 612 (712)
Q Consensus 585 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 612 (712)
. -.+.+|.+.|++.+|.++--
T Consensus 774 ~-------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 774 Q-------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred H-------HHHHHHHHhccHHHHHHHHH
Confidence 1 45667777777777766543
No 207
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.10 E-value=0.0085 Score=59.44 Aligned_cols=123 Identities=16% Similarity=0.102 Sum_probs=78.4
Q ss_pred CCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHc--CCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCC-Cceee
Q 005136 311 SFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKI--GIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDV-AHVVS 387 (712)
Q Consensus 311 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~ 387 (712)
+.+.+...+..++..+....+++.+..++...... ....-..+..++++.|.+.|..+.+..++..=...|+ ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556666677777777777777777777776655 2222234445777777777777777777766666665 66666
Q ss_pred HHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 005136 388 WNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASV 464 (712)
Q Consensus 388 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~ 464 (712)
++.++..+.+.|++..| .++...|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A-------------------------------~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSA-------------------------------AKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHH-------------------------------HHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 66666666666666666 66666666666666666666666555444
No 208
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.09 E-value=0.058 Score=50.06 Aligned_cols=75 Identities=11% Similarity=-0.102 Sum_probs=40.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHh--hHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHH
Q 005136 154 AAICGFVQNGFSFEALKLFLKLLESGVKPNEV--TFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITL 228 (712)
Q Consensus 154 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 228 (712)
.....+.+.|++++|.+.|+.+...-..+... ....++.++.+.++++.|...++..++..+......+...+.+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 33444556677777777777776642221111 1134456666777777777777777766543333333333333
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.08 E-value=0.0016 Score=47.44 Aligned_cols=65 Identities=14% Similarity=0.228 Sum_probs=48.0
Q ss_pred HHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHH
Q 005136 595 VDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVL 659 (712)
Q Consensus 595 ~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 659 (712)
..+|.+.+++++|.++++++ ...|+ ...+.....++...|++++|.+.++++++..|+++.....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 35677888888888888887 44454 5556666667888888888888888888888887655443
No 210
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.03 E-value=0.016 Score=52.28 Aligned_cols=153 Identities=13% Similarity=0.095 Sum_probs=82.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCc-hHHHHHHHHHhh
Q 005136 523 MVRGLAESGYAKESINLFEEMEKTSIT-P-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPN-GRHYTCVVDMLS 599 (712)
Q Consensus 523 l~~~~~~~~~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 599 (712)
....+...|++.+|++.|+++...... | -......++.++.+.|+++.|...+++..+.+.-.|. ...+..++.++.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 344455666666666666666653111 1 1123445555666666666666666666544433332 122222333222
Q ss_pred h-----------cCChHHHHHHHHhC----CCCCCHH---------------HHHHHHHHHhhcCCHHHHHHHHHHHhcc
Q 005136 600 R-----------SGRLSEAEDFINSM----PFEPDSN---------------AWASLLSGCKTYKNEQIAERAVKNLWKL 649 (712)
Q Consensus 600 ~-----------~g~~~~A~~~~~~~----~~~p~~~---------------~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 649 (712)
. .+...+|...|+.+ +..+-.. .-..+...|.+.|.+..|..-++.+++.
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 1 11233455554444 2221110 0112344578999999999999999999
Q ss_pred CCCCC---chHHHHHHHHHhcCCchhHHH
Q 005136 650 AEEHP---AGYVLLSNIYASAGRWIDAMN 675 (712)
Q Consensus 650 ~p~~~---~~~~~l~~~~~~~g~~~eA~~ 675 (712)
.|+.+ .++..++.+|.+.|..+.|..
T Consensus 171 yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 171 YPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp STTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 99964 567788889999998885543
No 211
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.96 E-value=0.0011 Score=49.06 Aligned_cols=62 Identities=13% Similarity=0.124 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHhcc---CC-C---CCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 621 NAWASLLSGCKTYKNEQIAERAVKNLWKL---AE-E---HPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 621 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p-~---~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
.++..+...|...|++++|+..+++++++ .+ + -..++..++.++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34566666677777777777777777653 12 2 245788889999999999999999888764
No 212
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.95 E-value=0.42 Score=46.28 Aligned_cols=106 Identities=19% Similarity=0.191 Sum_probs=66.5
Q ss_pred eHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 005136 387 SWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVAS 466 (712)
Q Consensus 387 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~ 466 (712)
+.+..+.-+...|+...|.++-.+..-|+...|...+.+++..++|++-..+-. . +-++.-|..++.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~----s--kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAK----S--KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHh----C--CCCCCChHHHHHHHHHCCC
Confidence 334445555556666666666666666666667777777777777665454322 1 1233667777777777777
Q ss_pred hHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHH
Q 005136 467 LEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRV 508 (712)
Q Consensus 467 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 508 (712)
..+|..++.++ .+..-+.+|.++|++.+|.+.
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 77777776652 114556777888888777665
No 213
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=0.1 Score=46.87 Aligned_cols=165 Identities=11% Similarity=0.077 Sum_probs=100.2
Q ss_pred eHHHHHHHHhccCChhhHHHHhhcCCCC----------CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 005136 387 SWNSMIGGYGLNGQMEEAKELFDNMPKR----------NDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSS 456 (712)
Q Consensus 387 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ 456 (712)
.|+.+.+.+.-...+++-+..++.-..| -....+.++..+.-.|.+.-....+++.++...+.++.....
T Consensus 138 pqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~ 217 (366)
T KOG2796|consen 138 PQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSG 217 (366)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHH
Confidence 3455555554444444444444433322 123455666677777788888888888888766667777777
Q ss_pred HHHHHhccCchHHHHHHHHHHHHcCCCCchh-----hHHHHHHHHHhcCChHHHHHHhccCCC---CCcchHHHHHHHHH
Q 005136 457 VLCASASVASLEKGKDLHGKIIKLGFPYDVF-----LGTALTDTYAKSGDIESSRRVFDRMPD---KNEISWTVMVRGLA 528 (712)
Q Consensus 457 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 528 (712)
+.+.-...||.+.|..+++...+..-..+.. +.......|.-++++.+|...+.++.. .++...|.-.-+..
T Consensus 218 Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 218 LGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 7777778888888888888776543233322 222333345556677777777776663 34444455555555
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHH
Q 005136 529 ESGYAKESINLFEEMEKTSITPNEL 553 (712)
Q Consensus 529 ~~~~~~~A~~~~~~~~~~~~~p~~~ 553 (712)
-.|+..+|++.++.|.+ ..|...
T Consensus 298 Ylg~l~DAiK~~e~~~~--~~P~~~ 320 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQ--QDPRHY 320 (366)
T ss_pred HHHHHHHHHHHHHHHhc--cCCccc
Confidence 66777778887777777 344443
No 214
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0067 Score=58.06 Aligned_cols=96 Identities=11% Similarity=0.015 Sum_probs=81.4
Q ss_pred hHHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 005136 588 GRHYTCVVDMLSRSGRLSEAEDFINSM-PF-EPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYA 665 (712)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 665 (712)
...+..++.+|.+.+++.+|+...++. .. .++...+..-..+|...|+++.|...++++++++|+|..+...|+.+-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 456778899999999999999999887 33 4567777778888999999999999999999999999999999998887
Q ss_pred hcCCchhH-HHHHHHHHhC
Q 005136 666 SAGRWIDA-MNVRKLMTEK 683 (712)
Q Consensus 666 ~~g~~~eA-~~~~~~~~~~ 683 (712)
+...+++. .+.|.+|...
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 77665555 7889999764
No 215
>PRK11906 transcriptional regulator; Provisional
Probab=96.88 E-value=0.015 Score=57.28 Aligned_cols=143 Identities=9% Similarity=0.095 Sum_probs=90.0
Q ss_pred ChHHHHHHHHHHHH-cCCCCCH-HHHHHHHHHhcc---------cCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhh
Q 005136 532 YAKESINLFEEMEK-TSITPNE-LTILSVLFACSH---------SGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLS 599 (712)
Q Consensus 532 ~~~~A~~~~~~~~~-~~~~p~~-~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 599 (712)
..+.|+.+|.+... ..+.|+. ..|..+..++.. ..+..+|.+.-++.. .+.| |+.....++.++.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv---eld~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS---DITTVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHH
Confidence 34567778888772 1256654 445555554432 123445555555555 4566 6777777777777
Q ss_pred hcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHH--HHhcCCchhHHH
Q 005136 600 RSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNI--YASAGRWIDAMN 675 (712)
Q Consensus 600 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~eA~~ 675 (712)
-.++++.|..+|++. ...|+ ...|......+.-.|+.++|.+.++++++++|....+-..-.++ |+..+ .++|+.
T Consensus 350 ~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~ 428 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIK 428 (458)
T ss_pred hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHH
Confidence 777788888888877 45666 44455555556678888888888888888888765554444444 44444 567777
Q ss_pred HHH
Q 005136 676 VRK 678 (712)
Q Consensus 676 ~~~ 678 (712)
++-
T Consensus 429 ~~~ 431 (458)
T PRK11906 429 LYY 431 (458)
T ss_pred HHh
Confidence 654
No 216
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.0059 Score=58.42 Aligned_cols=92 Identities=11% Similarity=0.043 Sum_probs=74.1
Q ss_pred HHHhhhcCChHHHHHHHHhC--------CC---------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchH
Q 005136 595 VDMLSRSGRLSEAEDFINSM--------PF---------EPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGY 657 (712)
Q Consensus 595 ~~~~~~~g~~~~A~~~~~~~--------~~---------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 657 (712)
+..|.+.|++..|...|++. .. ..-...+.++..+|.+.+++..|++...++++++|+|.-++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL 294 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL 294 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH
Confidence 45566667766666666653 01 11234566778888999999999999999999999999999
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 005136 658 VLLSNIYASAGRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 658 ~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 686 (712)
+.-|.+|...|.++.|+..|+++++..+.
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~P~ 323 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLEPS 323 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999986543
No 217
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.83 E-value=0.0096 Score=51.98 Aligned_cols=89 Identities=11% Similarity=0.097 Sum_probs=66.5
Q ss_pred CCCcccHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcc----------------cchHHHH
Q 005136 146 FQNVISWTAAICGFVQ-----NGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEI----------------NDFRLGL 204 (712)
Q Consensus 146 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~----------------~~~~~a~ 204 (712)
.++..+|..++..|.+ .|..+=....+..|.+-|+.-|..+|+.|++.+-+. .+.+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4555666666666643 466666777788888888888888888888876542 2356688
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHccCC
Q 005136 205 SVFGLIFKAGFEKHVSVCNSLITLSLKMGE 234 (712)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 234 (712)
+++++|...|+-||..++..++..+.+.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 899999999999999999999988866554
No 218
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.83 E-value=0.0095 Score=56.84 Aligned_cols=129 Identities=12% Similarity=0.040 Sum_probs=99.8
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhh-cCChHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 005136 553 LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSR-SGRLSEAEDFINSM--PFEPDSNAWASLLSG 629 (712)
Q Consensus 553 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 629 (712)
.+|..++....+.+..+.|..+|.++.+... .+...|...+..-.+ .++.+.|.++|+.. ....+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3577888888888899999999999983322 245566666666445 56666699999987 345567888888888
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 630 CKTYKNEQIAERAVKNLWKLAEEHP---AGYVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 630 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
+...|+.+.|..++++++..-|... .+|..++..-.+.|+.+....+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8999999999999999998876644 58889999999999999999999998874
No 219
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.81 E-value=0.033 Score=50.27 Aligned_cols=129 Identities=15% Similarity=0.188 Sum_probs=89.2
Q ss_pred HHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC----CCCCCHH-HHHHHHH
Q 005136 555 ILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM----PFEPDSN-AWASLLS 628 (712)
Q Consensus 555 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~-~~~~l~~ 628 (712)
+-.....+...|++.+|++.|+.+...+...| .......++.++.+.|++++|...+++. +..|... .+-.+..
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 34445567788999999999999997755555 4566778899999999999999999886 4444422 2211121
Q ss_pred HH-----------hhcCCHHHHHHHHHHHhccCCCCCchH-----------------HHHHHHHHhcCCchhHHHHHHHH
Q 005136 629 GC-----------KTYKNEQIAERAVKNLWKLAEEHPAGY-----------------VLLSNIYASAGRWIDAMNVRKLM 680 (712)
Q Consensus 629 ~~-----------~~~g~~~~a~~~~~~~~~~~p~~~~~~-----------------~~l~~~~~~~g~~~eA~~~~~~~ 680 (712)
++ ...+...+|...++..++..|+++.+- ...+..|.+.|++..|+.-++.+
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v 167 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYV 167 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 21 123345688999999999999976532 34577799999999999999998
Q ss_pred HhC
Q 005136 681 TEK 683 (712)
Q Consensus 681 ~~~ 683 (712)
++.
T Consensus 168 ~~~ 170 (203)
T PF13525_consen 168 IEN 170 (203)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 220
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.80 E-value=0.15 Score=49.75 Aligned_cols=161 Identities=14% Similarity=0.111 Sum_probs=94.3
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCCC-------CcchHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005136 490 TALTDTYAKSGDIESSRRVFDRMPDK-------NEISWTVMVRGLAE---SGYAKESINLFEEMEKTSITPNELTILSVL 559 (712)
Q Consensus 490 ~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 559 (712)
..++-.|....+++...++++.+... ...+-...+-++.+ .|+.++|+.++..+....-.++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34444566666666666666666532 11122223344455 677788888877755555566666766666
Q ss_pred HHhcc---------cCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChH----HHHHHH---HhC-----C--C
Q 005136 560 FACSH---------SGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLS----EAEDFI---NSM-----P--F 616 (712)
Q Consensus 560 ~~~~~---------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~----~A~~~~---~~~-----~--~ 616 (712)
..|-. ....++|+..|.+.- .+.|+..+--.++-.+...|... +..++- ..+ . .
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 54431 234677888887665 44565544444444444444322 222222 111 1 1
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 005136 617 EPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH 653 (712)
Q Consensus 617 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 653 (712)
..+--.+.+++.++.-.|+.++|.+.+++++++.|+.
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 2344555778888888999999999999999988764
No 221
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.78 E-value=0.005 Score=58.45 Aligned_cols=127 Identities=9% Similarity=0.001 Sum_probs=81.2
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHH----cCCC-CchhhHHHHHHHHHhcCChHHHHHHhccCC-------CCCc--c
Q 005136 453 TFSSVLCASASVASLEKGKDLHGKIIK----LGFP-YDVFLGTALTDTYAKSGDIESSRRVFDRMP-------DKNE--I 518 (712)
Q Consensus 453 ~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~--~ 518 (712)
.|..+-..|.-.|+++.|....+.-.. .|-. .....+..|..++.-.|+++.|.+.|+... .+.+ .
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 344455555566788888776654332 2211 123455667778888888888888887543 2222 2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH----cC-CCCCHHHHHHHHHHhcccCcHHHHHHHHHhcc
Q 005136 519 SWTVMVRGLAESGYAKESINLFEEMEK----TS-ITPNELTILSVLFACSHSGLVDKGLKYFNSME 579 (712)
Q Consensus 519 ~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 579 (712)
+..+|.+.|.-..+++.|+..+.+-.. .+ ..-....+.+|..++...|..++|+.+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 455677777777888888887765332 11 22344678888888888888888887776544
No 222
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.029 Score=51.83 Aligned_cols=103 Identities=12% Similarity=0.018 Sum_probs=77.9
Q ss_pred CCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcC---ChHHHHHHHHhC-CCCCCHHH-
Q 005136 549 TPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSG---RLSEAEDFINSM-PFEPDSNA- 622 (712)
Q Consensus 549 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p~~~~- 622 (712)
+-|...|..|..+|...|+.+.|...|.+.. .+.| |+..+..++.++.... ...++..+|+++ ...|+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~---rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNAL---RLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 3356789999999999999999999998887 3455 6777777777765432 466788899887 55666444
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhccCCCCC
Q 005136 623 WASLLSGCKTYKNEQIAERAVKNLWKLAEEHP 654 (712)
Q Consensus 623 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 654 (712)
...+...+..+|++.+|...++++++..|.+.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 44444558999999999999999999877754
No 223
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.76 E-value=0.014 Score=53.19 Aligned_cols=88 Identities=18% Similarity=0.107 Sum_probs=59.5
Q ss_pred HhhhcCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC---CchHHHHHHHHHhcC
Q 005136 597 MLSRSGRLSEAEDFINSM-PFEP----DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH---PAGYVLLSNIYASAG 668 (712)
Q Consensus 597 ~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g 668 (712)
-+.+.|++.+|...|... ..-| .+..+..|..++...|+++.|...|..+.+-.|++ |+.+..|+.+..+.|
T Consensus 150 ~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~ 229 (262)
T COG1729 150 DLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLG 229 (262)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhc
Confidence 344666677777776654 1112 13444456667777788888888777777766664 466777777788888
Q ss_pred CchhHHHHHHHHHhCC
Q 005136 669 RWIDAMNVRKLMTEKG 684 (712)
Q Consensus 669 ~~~eA~~~~~~~~~~~ 684 (712)
+.++|...|++++++=
T Consensus 230 ~~d~A~atl~qv~k~Y 245 (262)
T COG1729 230 NTDEACATLQQVIKRY 245 (262)
T ss_pred CHHHHHHHHHHHHHHC
Confidence 8888888888777653
No 224
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.72 E-value=0.038 Score=45.18 Aligned_cols=96 Identities=16% Similarity=0.143 Sum_probs=67.7
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCc---hHHHH
Q 005136 589 RHYTCVVDMLSRSGRLSEAEDFINSM----PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPA---GYVLL 660 (712)
Q Consensus 589 ~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l 660 (712)
..+..-+....+.|++++|.+.|+.+ +..| ....-..++.+|...|++++|...+++-++++|.++. +++..
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 33444555666888888888888887 2222 2455566777888899999999999999998888754 56666
Q ss_pred HHHHHhcCC---------------chhHHHHHHHHHhCC
Q 005136 661 SNIYASAGR---------------WIDAMNVRKLMTEKG 684 (712)
Q Consensus 661 ~~~~~~~g~---------------~~eA~~~~~~~~~~~ 684 (712)
|.++.++.. ..+|..-|+++++.=
T Consensus 91 gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 91 GLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred HHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 666666655 667777777777643
No 225
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.68 E-value=0.005 Score=52.38 Aligned_cols=69 Identities=22% Similarity=0.203 Sum_probs=54.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh-----CCCccCCc
Q 005136 622 AWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE-----KGLRKSGG 690 (712)
Q Consensus 622 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~-----~~~~~~~~ 690 (712)
....++..+...|++++|...+++++..+|-+-.++..|+.+|.+.|+..+|+++++++.+ -|++|++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 4455666778899999999999999999999999999999999999999999999998753 47776653
No 226
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.66 E-value=0.18 Score=40.00 Aligned_cols=141 Identities=18% Similarity=0.181 Sum_probs=83.1
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHH
Q 005136 527 LAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSE 606 (712)
Q Consensus 527 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 606 (712)
+.-.|..++..+++.+.... .+..-++.++--....-+-+...+.++.+-.-+.+.| ......++.+|...|.
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~-C~NlKrVi~C~~~~n~--- 84 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISK-CGNLKRVIECYAKRNK--- 84 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT----
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchh-hcchHHHHHHHHHhcc---
Confidence 45678888888888888763 2233333333333333344555566665543222222 1122334444444443
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 005136 607 AEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 607 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 686 (712)
........+.....+|+.+...+++..+.+....+|+++..++.+|.+.|+..+|-+++.+.=++|++
T Consensus 85 ------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 ------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33444556666778999999999999998765567999999999999999999999999999998875
No 227
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.60 E-value=0.02 Score=50.05 Aligned_cols=88 Identities=10% Similarity=0.281 Sum_probs=61.0
Q ss_pred CCCceeHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC----------------ChhhHH
Q 005136 278 ERNEVSWSVMIARYNQ-----SGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLK----------------ALRSGM 336 (712)
Q Consensus 278 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------------~~~~a~ 336 (712)
.++-.+|..++..|.+ .|..+=....++.|.+.|+.-|..+|+.|+..+=+.. +-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4566666666666654 4677778888889999999999999999998876522 233456
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Q 005136 337 HVHAHVLKIGIEKDVFISNALIDLYSKCG 365 (712)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 365 (712)
+++++|...|+-||..++..+++.+.+.+
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 66666666666666666666666665544
No 228
>PRK11906 transcriptional regulator; Provisional
Probab=96.58 E-value=0.081 Score=52.36 Aligned_cols=143 Identities=12% Similarity=0.104 Sum_probs=89.7
Q ss_pred ChHHHHHHhccCC---CCC---cchHHHHHHHHHHc---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhccc
Q 005136 501 DIESSRRVFDRMP---DKN---EISWTVMVRGLAES---------GYAKESINLFEEMEKTSITPNELTILSVLFACSHS 565 (712)
Q Consensus 501 ~~~~A~~~~~~~~---~~~---~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 565 (712)
..+.|..+|.+.. +.| ...|..+..++... ....+|.++.++..+.+ +-|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 3566777888776 434 33455555444322 23446677777777732 33556666677777777
Q ss_pred CcHHHHHHHHHhcchhcCCCCc-hHHHHHHHHHhhhcCChHHHHHHHHh-CCCCCCHHH---HHHHHHHHhhcCCHHHHH
Q 005136 566 GLVDKGLKYFNSMEPIYNIKPN-GRHYTCVVDMLSRSGRLSEAEDFINS-MPFEPDSNA---WASLLSGCKTYKNEQIAE 640 (712)
Q Consensus 566 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~~~---~~~l~~~~~~~g~~~~a~ 640 (712)
++.+.|...|++.. .+.|| ...+...+..+.-.|+.++|.+.+++ +...|.... ....+..|. ..-.+.|+
T Consensus 352 ~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~-~~~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYV-PNPLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHc-CCchhhhH
Confidence 77888888888887 56774 66777777777888888888888888 466665322 222232344 44466666
Q ss_pred HHHHHHhc
Q 005136 641 RAVKNLWK 648 (712)
Q Consensus 641 ~~~~~~~~ 648 (712)
.++-+-.+
T Consensus 428 ~~~~~~~~ 435 (458)
T PRK11906 428 KLYYKETE 435 (458)
T ss_pred HHHhhccc
Confidence 66655433
No 229
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.56 E-value=0.53 Score=42.77 Aligned_cols=164 Identities=18% Similarity=0.201 Sum_probs=95.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCC-CC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHH-HHHHHHHhh--
Q 005136 525 RGLAESGYAKESINLFEEMEKTSI-TP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRH-YTCVVDMLS-- 599 (712)
Q Consensus 525 ~~~~~~~~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~l~~~~~-- 599 (712)
..-.+.|++++|.+.|+.+..... .| ...+...++.++.+.++++.|+..+++....+.-+||..- +...+.++.
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~ 121 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQ 121 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcc
Confidence 344566677777777776665321 11 2244555566666777777777777776655555555431 111111111
Q ss_pred ---hcCChHHHHHHHHhC-------C---CCCCHHHH------------HHHHHHHhhcCCHHHHHHHHHHHhccCCCCC
Q 005136 600 ---RSGRLSEAEDFINSM-------P---FEPDSNAW------------ASLLSGCKTYKNEQIAERAVKNLWKLAEEHP 654 (712)
Q Consensus 600 ---~~g~~~~A~~~~~~~-------~---~~p~~~~~------------~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 654 (712)
...+...+...+..+ + -.||...- ..+...|.+.|.+..|..-++.+++..|+.+
T Consensus 122 i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~ 201 (254)
T COG4105 122 IDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTS 201 (254)
T ss_pred CCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccccc
Confidence 122233333333222 1 12332111 2344557889999999999999999887754
Q ss_pred ---chHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCC
Q 005136 655 ---AGYVLLSNIYASAGRWIDAMNVRKLMTEKGLRKSG 689 (712)
Q Consensus 655 ---~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~ 689 (712)
+++..+..+|.+.|..++|...- ++++.+.++++
T Consensus 202 ~~~eaL~~l~eaY~~lgl~~~a~~~~-~vl~~N~p~s~ 238 (254)
T COG4105 202 AVREALARLEEAYYALGLTDEAKKTA-KVLGANYPDSQ 238 (254)
T ss_pred chHHHHHHHHHHHHHhCChHHHHHHH-HHHHhcCCCCc
Confidence 56667777899999999998874 45566655554
No 230
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.079 Score=47.50 Aligned_cols=134 Identities=11% Similarity=0.035 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhc----CCCCchHHHHHH
Q 005136 519 SWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIY----NIKPNGRHYTCV 594 (712)
Q Consensus 519 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~p~~~~~~~l 594 (712)
+-+.++..+.-.|.+.-...++.+.++..-+.+......|.+.-.+.||.+.|..+|++..+.. ++.-+.......
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 3455666666777777778888888885444455667777777888888888888888665322 223333344455
Q ss_pred HHHhhhcCChHHHHHHHHhCCC-CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC
Q 005136 595 VDMLSRSGRLSEAEDFINSMPF-EP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEE 652 (712)
Q Consensus 595 ~~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 652 (712)
...|.-.+++.+|...+.++.. .| ++...+.-.-+..-.|+...|.+..+.+++..|.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 5566677777777777777633 22 2333333333333467778888888888887777
No 231
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.51 E-value=1.2 Score=45.58 Aligned_cols=180 Identities=14% Similarity=0.091 Sum_probs=120.9
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHhccCCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-H
Q 005136 485 DVFLGTALTDTYAKSGDIESSRRVFDRMPDK---NEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVL-F 560 (712)
Q Consensus 485 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~ 560 (712)
....+...+..-.+.|+.+.+.-.|++..-| -...|-..+.-....|+.+-|..++....+-. .|+......+- .
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~-~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH-VKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc-CCCCcHHHHHHHH
Confidence 3456667777777889999999888887754 23356666666666688888888877766542 23322222222 2
Q ss_pred HhcccCcHHHHHHHHHhcchhcCCCCc-hHHHHHHHHHhhhcCChHHHH---HHHHhC-C--CCCC--HHHHHHHHHH-H
Q 005136 561 ACSHSGLVDKGLKYFNSMEPIYNIKPN-GRHYTCVVDMLSRSGRLSEAE---DFINSM-P--FEPD--SNAWASLLSG-C 630 (712)
Q Consensus 561 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~-~--~~p~--~~~~~~l~~~-~ 630 (712)
.+...|+...|..+++.+.+. + |+ ...-..-+....+.|..+.+. .++... + ..+. ...+...... +
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 244578999999999999844 3 64 333334455667888888888 455444 1 1222 2222333333 5
Q ss_pred hhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 005136 631 KTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAG 668 (712)
Q Consensus 631 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 668 (712)
...++.+.|..++.++.+..|++...|..+.......+
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 56889999999999999999999999999998887766
No 232
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.086 Score=48.55 Aligned_cols=120 Identities=9% Similarity=0.103 Sum_probs=80.3
Q ss_pred HhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHH---HHHHHhhcCCH
Q 005136 561 ACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSMPFEPDSNAWAS---LLSGCKTYKNE 636 (712)
Q Consensus 561 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~ 636 (712)
.....|+...|...|+..... .| +......++.+|...|+.+.|..++..++.+-....+.. -+..+.+..+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 345667777788777777632 44 556667788888888888888888888864433333322 22233333333
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 637 QIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 637 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
.+... +++-...+|+|...-..|+..+...|+.++|.+.+=.+++++
T Consensus 220 ~~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 220 PEIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CCHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 33333 333455688888889999999999999999998877777653
No 233
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.45 E-value=1 Score=44.15 Aligned_cols=140 Identities=13% Similarity=0.139 Sum_probs=80.6
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 005136 416 DVSWSAIISGYLEHKQFDLVFAVFNEMLLSG-EIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTD 494 (712)
Q Consensus 416 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 494 (712)
..+|...++...+....+.|..+|-+..+.| +.++...+.+++.-++ .|++..|..+|+.=... ++.+.......+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHH
Confidence 3456666666666677777777777777776 4566666666665443 45666666666543332 1222223334444
Q ss_pred HHHhcCChHHHHHHhccCCC---CC--cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005136 495 TYAKSGDIESSRRVFDRMPD---KN--EISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVL 559 (712)
Q Consensus 495 ~~~~~g~~~~A~~~~~~~~~---~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 559 (712)
.+.+.++-+.|..+|+...+ .+ ...|..++.--..-|+...+..+=+++.+ +.|...+.....
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~ 542 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFT 542 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHH
Confidence 55566777777777775442 12 33566666666666666666666666666 445444433333
No 234
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.44 E-value=0.021 Score=51.95 Aligned_cols=94 Identities=17% Similarity=0.151 Sum_probs=62.0
Q ss_pred cccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC----CCCCC-HHHHHHHHHHHhhcCCH
Q 005136 563 SHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM----PFEPD-SNAWASLLSGCKTYKNE 636 (712)
Q Consensus 563 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~ 636 (712)
.+.|++..|...|....+.+--.+ ....+..|+.++...|++++|...|..+ +..|. +..+..+..+..+.|+.
T Consensus 152 ~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~ 231 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT 231 (262)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH
Confidence 344556666666666654322222 3445666788888888888887777665 22332 56667777777788888
Q ss_pred HHHHHHHHHHhccCCCCCch
Q 005136 637 QIAERAVKNLWKLAEEHPAG 656 (712)
Q Consensus 637 ~~a~~~~~~~~~~~p~~~~~ 656 (712)
++|...++++.+..|+.+.+
T Consensus 232 d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 232 DEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHHHHHHHCCCCHHH
Confidence 88888888888888886543
No 235
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.41 E-value=0.59 Score=45.74 Aligned_cols=165 Identities=12% Similarity=0.042 Sum_probs=108.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCC--CC-CHHHHHHHHHHhcc---cCcHHHHHHHHHhcchhcCCCCchHHHH
Q 005136 519 SWTVMVRGLAESGYAKESINLFEEMEKTSI--TP-NELTILSVLFACSH---SGLVDKGLKYFNSMEPIYNIKPNGRHYT 592 (712)
Q Consensus 519 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~p-~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 592 (712)
+...++-+|....+++..+++++.+..... .+ ....-.....|+.+ .|+.++|++++..+.. ..-.+++.++.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~-~~~~~~~d~~g 221 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE-SDENPDPDTLG 221 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh-ccCCCChHHHH
Confidence 344566679999999999999999987411 11 12222344556666 8999999999998542 24566888998
Q ss_pred HHHHHhhh---------cCChHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCC-HH---HHHHHH----HHHhcc----C
Q 005136 593 CVVDMLSR---------SGRLSEAEDFINSM-PFEPDSNAWASLLSGCKTYKN-EQ---IAERAV----KNLWKL----A 650 (712)
Q Consensus 593 ~l~~~~~~---------~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~-~~---~a~~~~----~~~~~~----~ 650 (712)
.+++.|-. ....++|...|.+. ..+|+...-.+++-.+...|. .+ +..++. ..+.+. .
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 88887742 22478899999887 666775444444444333443 22 222222 111111 2
Q ss_pred CCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 651 EEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 651 p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
-.+-+.+.+++.+..-.|++++|.+..++|.+..
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 2356777899999999999999999999998753
No 236
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.39 E-value=0.84 Score=42.51 Aligned_cols=193 Identities=17% Similarity=0.171 Sum_probs=104.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHhccCCC-----CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 005136 487 FLGTALTDTYAKSGDIESSRRVFDRMPD-----KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLF- 560 (712)
Q Consensus 487 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~- 560 (712)
.........+...+.+..+...+..... .....+......+...+++..+.+.+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 3444444555555555555555544331 222334444455555566666666666665532222 111122222
Q ss_pred HhcccCcHHHHHHHHHhcchhcCCCC----chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHhhc
Q 005136 561 ACSHSGLVDKGLKYFNSMEPIYNIKP----NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD--SNAWASLLSGCKTY 633 (712)
Q Consensus 561 ~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~ 633 (712)
.+...|+++.|...+++... ..| ....+......+...++.++|...+.+. ...+. ...+..+...+...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 139 ALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 55666666666666666641 222 2233333334455566677777666665 22222 45555555556666
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 634 KNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 634 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
++++.+...+..+....|.....+..++..+...|.++++...+.+..+.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 67777777777777776665555666666666556667777666666554
No 237
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.32 E-value=1.2 Score=43.64 Aligned_cols=127 Identities=13% Similarity=0.147 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhhhcCCC--CceeeHHHHHHHHhccCChhhHHHHhhcCCC--CCccc-HHHHHHH
Q 005136 351 VFISNALIDLYSKCGETKDGRLVFDSIVEKDV--AHVVSWNSMIGGYGLNGQMEEAKELFDNMPK--RNDVS-WSAIISG 425 (712)
Q Consensus 351 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~-~~~l~~~ 425 (712)
..+|..+++.-.+..-++.|+.+|-+..+.+. +++-.+++++.-++ .|+..-|..+|+--.. +|... -+..+..
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34455555555555556666666666655553 34555555555444 3445555555554332 23322 2334455
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCchHHHHHHHHHHHH
Q 005136 426 YLEHKQFDLVFAVFNEMLLSGEIPN--KSTFSSVLCASASVASLEKGKDLHGKIIK 479 (712)
Q Consensus 426 ~~~~~~~~~a~~~~~~~~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 479 (712)
+...++-..|..+|+....+ +..+ ...|..+|.--..-|++..+..+-+.+..
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 55556666666666643332 1112 34566666666666777666666666554
No 238
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.29 E-value=1.6 Score=44.71 Aligned_cols=122 Identities=12% Similarity=0.022 Sum_probs=54.7
Q ss_pred ceeeHHHHHHHHhccCChhhHHHHhhcCCCCC---cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005136 384 HVVSWNSMIGGYGLNGQMEEAKELFDNMPKRN---DVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCA 460 (712)
Q Consensus 384 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~ 460 (712)
+...|...+.--...|+.+.+.-++++..-|- ...|-..+.-....|+.+.|..++....+--++-.+.+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 34456666666666666666666665554431 122333333333335555555555544433222222221111122
Q ss_pred HhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHH
Q 005136 461 SASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSR 506 (712)
Q Consensus 461 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 506 (712)
+-..|+...|..+++.+...- +.-...-..-+....+.|+.+.+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhh
Confidence 334456666666666655543 212222222333344455555554
No 239
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.25 E-value=0.0061 Score=45.02 Aligned_cols=62 Identities=18% Similarity=0.237 Sum_probs=38.9
Q ss_pred hHHHHHHHHHhhhcCChHHHHHHHHhC-----CCC---CC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhcc
Q 005136 588 GRHYTCVVDMLSRSGRLSEAEDFINSM-----PFE---PD-SNAWASLLSGCKTYKNEQIAERAVKNLWKL 649 (712)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~---p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 649 (712)
..+++.++.+|...|++++|++.+++. ... |+ ..++..+..++...|++++|++++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345666777777777777777776654 011 11 344566666677777777777777777653
No 240
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.21 E-value=0.093 Score=42.95 Aligned_cols=116 Identities=15% Similarity=0.154 Sum_probs=57.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhc
Q 005136 524 VRGLAESGYAKESINLFEEMEKTSIT--PNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRS 601 (712)
Q Consensus 524 ~~~~~~~~~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 601 (712)
.....+.|++++|++.|+.+...--. -....-..++.+|.+.+++++|...+++.++.+-.+|++ .|.....++..-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHH
Confidence 34455666666776666666654110 012344555666666666666666666666332233321 122222222221
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCch
Q 005136 602 GRLSEAEDFINSM-PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAG 656 (712)
Q Consensus 602 g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 656 (712)
...+ ..+..+ ... ...+....|...++++++..|+++.+
T Consensus 96 ~~~~---~~~~~~~~~d-------------rD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 96 EQDE---GSLQSFFRSD-------------RDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHhh---hHHhhhcccc-------------cCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 1111 111111 111 11233567888899999999997643
No 241
>PRK15331 chaperone protein SicA; Provisional
Probab=96.12 E-value=0.055 Score=45.35 Aligned_cols=92 Identities=8% Similarity=-0.003 Sum_probs=60.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhh
Q 005136 523 MVRGLAESGYAKESINLFEEMEKTSITPN-ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSR 600 (712)
Q Consensus 523 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 600 (712)
...-+...|++++|..+|.-+.- ..|. ..-+..|..++...+++++|+..|..... +.+ |+..+-..+.+|..
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~---l~~~dp~p~f~agqC~l~ 117 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT---LLKNDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cccCCCCccchHHHHHHH
Confidence 34445677888888888877766 3343 33445566666667888888888776651 222 44555567788888
Q ss_pred cCChHHHHHHHHhCCCCCC
Q 005136 601 SGRLSEAEDFINSMPFEPD 619 (712)
Q Consensus 601 ~g~~~~A~~~~~~~~~~p~ 619 (712)
.|+.+.|+..|+.....|.
T Consensus 118 l~~~~~A~~~f~~a~~~~~ 136 (165)
T PRK15331 118 MRKAAKARQCFELVNERTE 136 (165)
T ss_pred hCCHHHHHHHHHHHHhCcc
Confidence 8888888888877644454
No 242
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.94 E-value=0.82 Score=40.90 Aligned_cols=88 Identities=15% Similarity=0.091 Sum_probs=48.0
Q ss_pred hHHHHHHHHHhhhcCChHHHHHHHHhCC-------CCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHhcc----CCCCCc
Q 005136 588 GRHYTCVVDMLSRSGRLSEAEDFINSMP-------FEPDS-NAWASLLSGCKTYKNEQIAERAVKNLWKL----AEEHPA 655 (712)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~~~~ 655 (712)
.+.+....+.|++..++++|-..+.+-. .-|+. ..+...+-.+....|+..|+..++...+. .|++..
T Consensus 150 ~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r 229 (308)
T KOG1585|consen 150 FELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSR 229 (308)
T ss_pred HHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHH
Confidence 3445556667777777777766655541 11221 22333344455566777777777765442 455556
Q ss_pred hHHHHHHHHHhcCCchhHHHH
Q 005136 656 GYVLLSNIYASAGRWIDAMNV 676 (712)
Q Consensus 656 ~~~~l~~~~~~~g~~~eA~~~ 676 (712)
+...|+..|- .|+.+++..+
T Consensus 230 ~lenLL~ayd-~gD~E~~~kv 249 (308)
T KOG1585|consen 230 SLENLLTAYD-EGDIEEIKKV 249 (308)
T ss_pred HHHHHHHHhc-cCCHHHHHHH
Confidence 6666665554 3445555443
No 243
>PRK11619 lytic murein transglycosylase; Provisional
Probab=95.75 E-value=3.7 Score=44.35 Aligned_cols=114 Identities=10% Similarity=0.055 Sum_probs=49.0
Q ss_pred cCChHHHHHHHHHHHHcC-CCCCHH--HHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHH
Q 005136 530 SGYAKESINLFEEMEKTS-ITPNEL--TILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSE 606 (712)
Q Consensus 530 ~~~~~~A~~~~~~~~~~~-~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 606 (712)
..+.+.|...+....... +.+... ....+.......+..+.+...++..... ..+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 344566666666553322 222221 1222222222222244555555544311 1133333333444446666666
Q ss_pred HHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 005136 607 AEDFINSMPF--EPDSNAWASLLSGCKTYKNEQIAERAVKNL 646 (712)
Q Consensus 607 A~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 646 (712)
+...+..|+. .-...-.--+..++...|+.++|...++++
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666631 111111222333334456666666666665
No 244
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.70 E-value=4.7 Score=45.08 Aligned_cols=144 Identities=14% Similarity=0.086 Sum_probs=93.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCc
Q 005136 488 LGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGL 567 (712)
Q Consensus 488 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 567 (712)
.+....+.-.+.|-+++|..++..-.+.-...|.+...-+...+.+++|.-.|+..=+ ..-.+.+|...|+
T Consensus 910 ~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~d 980 (1265)
T KOG1920|consen 910 YFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGD 980 (1265)
T ss_pred ccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhcc
Confidence 4444555556777778887777665555556677777777788888888877765422 2345677888899
Q ss_pred HHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHh
Q 005136 568 VDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLW 647 (712)
Q Consensus 568 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 647 (712)
|.+|..+..++.. +..--..+-..|+.-+...+++-+|-+++......|... +..++....+++|.++....-
T Consensus 981 Wr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~a-----v~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 981 WREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEA-----VALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHH-----HHHHhhHhHHHHHHHHHHhcc
Confidence 9999988887751 111112223567778888899989888888875444322 223445556666766666554
No 245
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.68 E-value=0.39 Score=49.63 Aligned_cols=114 Identities=15% Similarity=0.045 Sum_probs=65.4
Q ss_pred cCcHHHHHHHHHhcchhcCCCCchHHHH-HHHHHhhhcCChHHHHHHHHhCCC------CCCHHHHHHHHHHHhhcCCHH
Q 005136 565 SGLVDKGLKYFNSMEPIYNIKPNGRHYT-CVVDMLSRSGRLSEAEDFINSMPF------EPDSNAWASLLSGCKTYKNEQ 637 (712)
Q Consensus 565 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~------~p~~~~~~~l~~~~~~~g~~~ 637 (712)
..+.+.|.++++.+... -|+...|. .-++.+...|+.++|++.|++... +.....+..+.+.+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 34556666666666532 45444333 334555666777777777765421 112334455566666777777
Q ss_pred HHHHHHHHHhccCCCCCchHHHH-HHHHHhcCCc-------hhHHHHHHHHH
Q 005136 638 IAERAVKNLWKLAEEHPAGYVLL-SNIYASAGRW-------IDAMNVRKLMT 681 (712)
Q Consensus 638 ~a~~~~~~~~~~~p~~~~~~~~l-~~~~~~~g~~-------~eA~~~~~~~~ 681 (712)
+|...+.++.+...-+..+|..+ +-++...|+. ++|.+++.++-
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 77777777777655544444433 3334566766 66666666553
No 246
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.66 E-value=1.8 Score=40.14 Aligned_cols=197 Identities=16% Similarity=0.184 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHc-CCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC--CCc-chHHHHHH-
Q 005136 451 KSTFSSVLCASASVASLEKGKDLHGKIIKL-GFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPD--KNE-ISWTVMVR- 525 (712)
Q Consensus 451 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~- 525 (712)
...+......+...+....+...+...... ........+......+...+++..+...+..... ++. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 344555555566666666666666555542 2334444555555666666777777777776653 222 22333333
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC--chHHHHHHHHHhh
Q 005136 526 GLAESGYAKESINLFEEMEKTSITP----NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP--NGRHYTCVVDMLS 599 (712)
Q Consensus 526 ~~~~~~~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~ 599 (712)
.+...|+++.|...+.+... ..| ....+......+...++.+.+...+..... ..+ ....+..+...+.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 213 (291)
T COG0457 139 ALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK---LNPDDDAEALLNLGLLYL 213 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh---hCcccchHHHHHhhHHHH
Confidence 68889999999999998865 333 233444444456778899999999998873 233 3677888888999
Q ss_pred hcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC
Q 005136 600 RSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEE 652 (712)
Q Consensus 600 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 652 (712)
..+++++|...+... ...|+ ...+......+...+..+.+...+.+.....|.
T Consensus 214 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 214 KLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999999998887 44454 455555555555777899999999999998887
No 247
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.62 E-value=0.042 Score=46.95 Aligned_cols=124 Identities=8% Similarity=0.044 Sum_probs=82.9
Q ss_pred HHHhcccCcHHHHHHHHHhcchhcCCCCc-----hHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHh
Q 005136 559 LFACSHSGLVDKGLKYFNSMEPIYNIKPN-----GRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCK 631 (712)
Q Consensus 559 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~ 631 (712)
..-+...|++++|..-|..+... +++. ...|..-+.++.+.+.|+.|+.-..+. .+.|. ...+..-..+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 44567889999999998888743 2222 224555567788899999998877766 56665 333344455688
Q ss_pred hcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHH--HHHHHHhCC
Q 005136 632 TYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMN--VRKLMTEKG 684 (712)
Q Consensus 632 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~--~~~~~~~~~ 684 (712)
...++++|..-|+++++.+|....+-...+.+--......++++ .+.++++-|
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlG 234 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDLG 234 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 88899999999999999999877666655555444443344433 344555544
No 248
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.52 E-value=0.081 Score=52.28 Aligned_cols=65 Identities=11% Similarity=0.095 Sum_probs=49.5
Q ss_pred CC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHhhcCCHHHHHHHHHHHhcc
Q 005136 585 KP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPDS----NAWASLLSGCKTYKNEQIAERAVKNLWKL 649 (712)
Q Consensus 585 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 649 (712)
.| +...++.++.+|...|++++|+..|++. .+.|+. ..|.++..+|...|+.++|++.++++++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45 5677788888888888888888888775 566663 34777777788888888888888888876
No 249
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.43 E-value=0.13 Score=41.71 Aligned_cols=49 Identities=12% Similarity=0.259 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHH
Q 005136 548 ITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVD 596 (712)
Q Consensus 548 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 596 (712)
+.|+..++.+++.+|+..|++..|.++++.+.+.++++.+..+|..|..
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4455555666666666666666666666666555554445555555443
No 250
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.41 E-value=4.7 Score=43.20 Aligned_cols=115 Identities=17% Similarity=0.172 Sum_probs=68.0
Q ss_pred HHHHhhccchhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHHHHhhcCCCCcch--HHHHHHHHHhcCChH
Q 005136 27 LLKDITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVKDLNGFDLVV--HNCMINANIQWGNLE 104 (712)
Q Consensus 27 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~ 104 (712)
+++-+....+...-..+++.+.+.|+. +....+.|+.+|.+.++.++-.+..+... ...+. ....+..+.+.+-++
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLD 480 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHH
Confidence 344445555555556666777777765 44455567778888887777777666655 33332 344555555555555
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHHccCChHHHHHHhhhCCCC
Q 005136 105 EAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERNPFQ 147 (712)
Q Consensus 105 ~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 147 (712)
+|..+-.+... ++.....++ -..|++++|.+.+..++.+
T Consensus 481 ~a~~LA~k~~~-he~vl~ill---e~~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 481 EAELLATKFKK-HEWVLDILL---EDLHNYEEALRYISSLPIS 519 (933)
T ss_pred HHHHHHHHhcc-CHHHHHHHH---HHhcCHHHHHHHHhcCCHH
Confidence 55554443333 344433333 3567788888888887754
No 251
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.34 E-value=0.042 Score=32.38 Aligned_cols=27 Identities=19% Similarity=0.317 Sum_probs=12.5
Q ss_pred hHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 656 GYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 656 ~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
++..+|.++.+.|++++|++.+++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344444455555555555555444443
No 252
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.31 E-value=0.98 Score=37.86 Aligned_cols=122 Identities=17% Similarity=0.185 Sum_probs=56.9
Q ss_pred HHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHH
Q 005136 458 LCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESI 537 (712)
Q Consensus 458 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 537 (712)
+..+...+.......+++.+.+.+ ..+....+.++..|++.+ .....+.++. ..+.......+..|.+.+.++++.
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~~~ 89 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEEAV 89 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHHHH
Confidence 333334444555555555555444 244455555666665442 2333333331 123333444555556666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhccc-CcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhh
Q 005136 538 NLFEEMEKTSITPNELTILSVLFACSHS-GLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLS 599 (712)
Q Consensus 538 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 599 (712)
.++.++-. +...+..+... ++++.|.+++.+.. ++..|..++..+.
T Consensus 90 ~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~~-------~~~lw~~~~~~~l 136 (140)
T smart00299 90 ELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQN-------NPELWAEVLKALL 136 (140)
T ss_pred HHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhCC-------CHHHHHHHHHHHH
Confidence 66554321 11122222222 56666666665432 4445555555443
No 253
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.16 E-value=0.8 Score=46.64 Aligned_cols=131 Identities=12% Similarity=0.042 Sum_probs=69.2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCChhH
Q 005136 88 VVHNCMINANIQWGNLEEAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFE 167 (712)
Q Consensus 88 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 167 (712)
.-.+.++.-+-+.|..+.|+.+-.. + ..-.....+.|+++.|.+...+.. +...|..|.....+.|+++-
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~l 365 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIEL 365 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHH
Confidence 3355556666666666666655432 1 122334456666666666665554 44466667776677777777
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHh
Q 005136 168 ALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFD 243 (712)
Q Consensus 168 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 243 (712)
|.+.|++... +..|+-.+...|+.+...++.+.....| -++....++.-.|+.++..+++.
T Consensus 366 Ae~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 366 AEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 7666665432 3344444555566666666655555544 23334444444566666555554
No 254
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.10 E-value=0.21 Score=46.55 Aligned_cols=161 Identities=12% Similarity=0.009 Sum_probs=119.6
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHH----HHHHHhhhcC
Q 005136 527 LAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYT----CVVDMLSRSG 602 (712)
Q Consensus 527 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g 602 (712)
.-..|+..+|-..++++.+. .+.|...+...-.+|...|+.+.-...++++.. ...|+.+.|. .++.++..+|
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhc
Confidence 34578888999999999885 556777788888899999999999999999883 3455554433 4556677999
Q ss_pred ChHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC----CchHHHHHHHHHhcCCchhHHHH
Q 005136 603 RLSEAEDFINSM-PFE-PDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH----PAGYVLLSNIYASAGRWIDAMNV 676 (712)
Q Consensus 603 ~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~eA~~~ 676 (712)
-+++|.+.-++. .+. .|.-.-......+...|++.++.++..+.-..-..+ ..-|-+.+..+...+.++.|+++
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 999999999987 443 345666777777888999999999888764432221 22455666677788999999999
Q ss_pred HHHHHhCCCccCCc
Q 005136 677 RKLMTEKGLRKSGG 690 (712)
Q Consensus 677 ~~~~~~~~~~~~~~ 690 (712)
|++=+-+..++..+
T Consensus 270 yD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 270 YDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHhhccch
Confidence 99876655555554
No 255
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.08 E-value=8 Score=46.86 Aligned_cols=320 Identities=11% Similarity=0.052 Sum_probs=172.4
Q ss_pred HHHHHHHhcCChHHHHHHHHhhhcCCC--C-ceeeHHHHHHHHhccCChhhHHHHhhc-CCCCCcccHHHHHHHHHhcCC
Q 005136 356 ALIDLYSKCGETKDGRLVFDSIVEKDV--A-HVVSWNSMIGGYGLNGQMEEAKELFDN-MPKRNDVSWSAIISGYLEHKQ 431 (712)
Q Consensus 356 ~l~~~~~~~g~~~~A~~~~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 431 (712)
.+..+-.+++.+.+|...+++-..... . ....+..+...|...++++....+... ...+ ....-|-.....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~---sl~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP---SLYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc---cHHHHHHHHHhhcc
Confidence 455567788899999998888421111 1 122344444478888888777666553 2222 23345566778899
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhcc
Q 005136 432 FDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDR 511 (712)
Q Consensus 432 ~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 511 (712)
+..|..-|+.+.+.+ ++...++..++......+.+....-..+......-+-....++.-+++--+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 999999999998865 344667777777766677776666544444332211112222223333356677777666655
Q ss_pred CCCCCcchHHHH--HHHHHHcCChH--HHHHHHHHHHHcCCCC--------CH-HHHHHHHHHhcccCcHHHHHHHHHhc
Q 005136 512 MPDKNEISWTVM--VRGLAESGYAK--ESINLFEEMEKTSITP--------NE-LTILSVLFACSHSGLVDKGLKYFNSM 578 (712)
Q Consensus 512 ~~~~~~~~~~~l--~~~~~~~~~~~--~A~~~~~~~~~~~~~p--------~~-~~~~~l~~~~~~~g~~~~a~~~~~~~ 578 (712)
..+...|... +..+.+..+-+ .-...++.+++.-+.| +. ..|..++....-. +.+...+.+...
T Consensus 1543 --~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~~~l~~~ 1619 (2382)
T KOG0890|consen 1543 --DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENSIEELKKV 1619 (2382)
T ss_pred --cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHHHHHhhcc
Confidence 4455555554 23333222211 1112333333221111 10 1233333222111 111112222222
Q ss_pred chhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC----CCCC-----CHHHHHHHHHHHhhcCCHHHHHHHHHHHhcc
Q 005136 579 EPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM----PFEP-----DSNAWASLLSGCKTYKNEQIAERAVKNLWKL 649 (712)
Q Consensus 579 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 649 (712)
.......-+...|..-...-....+..+-+--+++. ..+| -..+|...+..+...|.++.|...+-.+.+.
T Consensus 1620 s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~ 1699 (2382)
T KOG0890|consen 1620 SYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES 1699 (2382)
T ss_pred CccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc
Confidence 111111111222222111111111122211112221 1122 2677888888889999999999999888877
Q ss_pred CCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 650 AEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 650 ~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
. -|.++.-.++.++..|+...|+.++++.++.+.
T Consensus 1700 r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1700 R--LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred c--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 7 468999999999999999999999999887654
No 256
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.08 E-value=0.47 Score=49.11 Aligned_cols=116 Identities=18% Similarity=0.078 Sum_probs=67.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHhcccCcHHHHHHHHHhcchh-cCCCC-chHHHHHHHHHhhhcCChHHH
Q 005136 531 GYAKESINLFEEMEKTSITPNELTILSV-LFACSHSGLVDKGLKYFNSMEPI-YNIKP-NGRHYTCVVDMLSRSGRLSEA 607 (712)
Q Consensus 531 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~A 607 (712)
.+.+.|.++++.+.+ .-|+...|... .+.+...|+.++|++.|++.... ...+. ....+--++.++.-.++|++|
T Consensus 247 ~~~~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 455667777777776 45666554433 23455667777777777765421 11111 233444566677777778887
Q ss_pred HHHHHhCCC--CCCHHHHHHHHHH-HhhcCCH-------HHHHHHHHHHhc
Q 005136 608 EDFINSMPF--EPDSNAWASLLSG-CKTYKNE-------QIAERAVKNLWK 648 (712)
Q Consensus 608 ~~~~~~~~~--~p~~~~~~~l~~~-~~~~g~~-------~~a~~~~~~~~~ 648 (712)
...+..+.. .-+...|..+..+ +...|+. ++|.++++++..
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 777777732 2234444444444 4456666 666666666644
No 257
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.08 E-value=2.3 Score=39.63 Aligned_cols=154 Identities=13% Similarity=0.111 Sum_probs=102.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCC
Q 005136 524 VRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGR 603 (712)
Q Consensus 524 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 603 (712)
.......|++.+|...|+...... +-+......+..+|...|+.+.|..++..+-.+ .-.........-+..+.+...
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhc
Confidence 345667888888888888887742 223456667788888899999999998887522 111111222233455566666
Q ss_pred hHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC--CCCCchHHHHHHHHHhcCCchhHHHHHHH
Q 005136 604 LSEAEDFINSMPFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLA--EEHPAGYVLLSNIYASAGRWIDAMNVRKL 679 (712)
Q Consensus 604 ~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 679 (712)
..+...+-.+....| |...-..+...+...|+.+.|.+.+-.++..+ -++..+--.|..++...|.-+.+...+++
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RR 297 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRR 297 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 666666666665566 56666677777888899998888887777654 44677778888888888866555544443
No 258
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.04 E-value=1.3 Score=37.04 Aligned_cols=127 Identities=11% Similarity=0.053 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHh
Q 005136 519 SWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDML 598 (712)
Q Consensus 519 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 598 (712)
....++..+...+........++.+...+ ..+....+.++..|++.+ ..+..+.++.- ++.......++.+
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~~-------~~~yd~~~~~~~c 79 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDNK-------SNHYDIEKVGKLC 79 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHhc-------cccCCHHHHHHHH
Confidence 34556777777788888888888888765 345566777777777653 44555555521 1222333466777
Q ss_pred hhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhc-CCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 005136 599 SRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTY-KNEQIAERAVKNLWKLAEEHPAGYVLLSNIYA 665 (712)
Q Consensus 599 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 665 (712)
.+.+.++++..++.+++. +...+..+... ++.+.|.+++++ +.++..|..++..+.
T Consensus 80 ~~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 80 EKAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 788888888888888753 12222233333 788888887776 335666666665554
No 259
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.00 E-value=0.8 Score=42.96 Aligned_cols=153 Identities=12% Similarity=0.084 Sum_probs=107.7
Q ss_pred hcCChHHHHHHhccCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH----HHHHHhcccCcHHH
Q 005136 498 KSGDIESSRRVFDRMPD---KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTIL----SVLFACSHSGLVDK 570 (712)
Q Consensus 498 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~ 570 (712)
-.|+..+|-..++++.+ .|...+..-=.++...|+.+.-...++++... ..|+.+.|. .+..++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 45677777777777663 46677777778899999998888888888764 355554333 23334567899999
Q ss_pred HHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhCCCC--CC----HHHHHHHHHHHhhcCCHHHHHHHH
Q 005136 571 GLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSMPFE--PD----SNAWASLLSGCKTYKNEQIAERAV 643 (712)
Q Consensus 571 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--p~----~~~~~~l~~~~~~~g~~~~a~~~~ 643 (712)
|.+.-++.. .+.| |.....++...+...|++.++.+++.+-... .. .-.|.-..-.+...+.++.|+++|
T Consensus 194 AEk~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 194 AEKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred HHHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 999998887 4566 6777778888899999999999999886321 11 111222333456778999999999
Q ss_pred HHHh--ccCCCCC
Q 005136 644 KNLW--KLAEEHP 654 (712)
Q Consensus 644 ~~~~--~~~p~~~ 654 (712)
.+-+ ++..++.
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 8754 3444544
No 260
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.94 E-value=0.043 Score=34.83 Aligned_cols=34 Identities=18% Similarity=0.220 Sum_probs=30.0
Q ss_pred CchHHHHHHHHHhcCCchhHHHHHHHHHhCCCcc
Q 005136 654 PAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLRK 687 (712)
Q Consensus 654 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~ 687 (712)
|.++..|+.+|.+.|++++|+++++++++..+..
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4678999999999999999999999999976543
No 261
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.94 E-value=0.047 Score=32.23 Aligned_cols=30 Identities=10% Similarity=0.015 Sum_probs=14.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhccCCC
Q 005136 623 WASLLSGCKTYKNEQIAERAVKNLWKLAEE 652 (712)
Q Consensus 623 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 652 (712)
|..+...+...|++++|+..++++++++|+
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 344444445555555555555555555543
No 262
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.77 E-value=0.052 Score=32.57 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=22.5
Q ss_pred hHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 656 GYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 656 ~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
++..|+.+|.+.|++++|++++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467899999999999999999999653
No 263
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.69 E-value=1.3 Score=45.27 Aligned_cols=130 Identities=19% Similarity=0.276 Sum_probs=59.2
Q ss_pred HHHhcCChhHHHHHHH--HHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCCh
Q 005136 158 GFVQNGFSFEALKLFL--KLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEV 235 (712)
Q Consensus 158 ~~~~~g~~~~A~~~~~--~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 235 (712)
...-.|+++++.++.. ++.. .+ +....+.++.-+.+.|-.+.|+++...- ..-.....+.|+.
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCH
Confidence 3455667777666664 2221 11 1334556666666666666666654321 1223344566666
Q ss_pred HHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005136 236 DLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTR 309 (712)
Q Consensus 236 ~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 309 (712)
+.|.++.++.. +...|..|.....+.|+++-|++.|.+... |..|+-.|.-.|+.++-.++.+....
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 66666655443 333555555555555555555555555442 34444444455555444444444443
No 264
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.60 E-value=0.046 Score=32.23 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 005136 621 NAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH 653 (712)
Q Consensus 621 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 653 (712)
..+..+...+...|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456778888999999999999999999999985
No 265
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.58 E-value=0.11 Score=44.08 Aligned_cols=56 Identities=11% Similarity=0.214 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHh
Q 005136 353 ISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELF 408 (712)
Q Consensus 353 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 408 (712)
+...++..+...|++++|......+...+|.+...|..+|.+|...|+...|.+.|
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y 119 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVY 119 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 45566777888899999999999998888888888888888888888888885554
No 266
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.51 E-value=0.58 Score=37.98 Aligned_cols=94 Identities=18% Similarity=0.244 Sum_probs=55.8
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHH
Q 005136 517 EISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVD 596 (712)
Q Consensus 517 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 596 (712)
..++..++.++++.|+.+....+++..- |+.++... ..+. ......+.|+..+..+++.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~----------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD----------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc----------cCCCCCCCCCHHHHHHHHH
Confidence 3455566666666666666665554433 23322110 0000 2223456778888888888
Q ss_pred HhhhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHh
Q 005136 597 MLSRSGRLSEAEDFINSM----PFEPDSNAWASLLSGCK 631 (712)
Q Consensus 597 ~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~ 631 (712)
+|+..|++..|+++++.. +++-+...|..++.-+.
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 888888888888877765 45555777777776643
No 267
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.46 E-value=4.8 Score=38.53 Aligned_cols=19 Identities=16% Similarity=-0.214 Sum_probs=13.7
Q ss_pred HHhhcCCHHHHHHHHHHHh
Q 005136 629 GCKTYKNEQIAERAVKNLW 647 (712)
Q Consensus 629 ~~~~~g~~~~a~~~~~~~~ 647 (712)
.+.+.++++.|.++++-++
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 3567788888888887654
No 268
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.28 E-value=0.27 Score=41.19 Aligned_cols=88 Identities=17% Similarity=0.110 Sum_probs=61.1
Q ss_pred HhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHH-HHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHH
Q 005136 597 MLSRSGRLSEAEDFINSM-PFEPDSNAWASLLS-GCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAM 674 (712)
Q Consensus 597 ~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~ 674 (712)
.-.+.++.+++..++..+ ..+|.......+-. .+...|++.+|.++++.+.+..|..|..--.++.++...|+. +=.
T Consensus 19 ~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~-~Wr 97 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP-SWR 97 (160)
T ss_pred HHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh-HHH
Confidence 335677888888888888 34666544443333 367889999999999998888888887777788888777763 334
Q ss_pred HHHHHHHhCCC
Q 005136 675 NVRKLMTEKGL 685 (712)
Q Consensus 675 ~~~~~~~~~~~ 685 (712)
.+-+++++.+.
T Consensus 98 ~~A~evle~~~ 108 (160)
T PF09613_consen 98 RYADEVLESGA 108 (160)
T ss_pred HHHHHHHhcCC
Confidence 44455666553
No 269
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.25 E-value=0.87 Score=43.24 Aligned_cols=162 Identities=11% Similarity=0.012 Sum_probs=92.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCC---C--CHHHHHHHHHHhcccCcHHHHHHHHHhcc---hhcCCCCc-----
Q 005136 521 TVMVRGLAESGYAKESINLFEEMEKTSIT---P--NELTILSVLFACSHSGLVDKGLKYFNSME---PIYNIKPN----- 587 (712)
Q Consensus 521 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~p~----- 587 (712)
.++..++...+.++++++.|+...+---. | ....+..|...|....|+++|.-+..+.. +..++..-
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 34556666677788888888776542111 1 12456777777777888888776655432 12232221
Q ss_pred hHHHHHHHHHhhhcCChHHHHHHHHhC-C---CCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC--C----C
Q 005136 588 GRHYTCVVDMLSRSGRLSEAEDFINSM-P---FEPD----SNAWASLLSGCKTYKNEQIAERAVKNLWKLAE--E----H 653 (712)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p--~----~ 653 (712)
......|.-+|-..|+.-+|.+..++. + +..| ......+...|...|+.+.|..-|+.+...-. + .
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgq 285 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQ 285 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHH
Confidence 223344566677778877777777664 1 1222 23345556668888888888888887765321 1 1
Q ss_pred CchHHHHHHHHHhcCCchh-----HHHHHHHHHh
Q 005136 654 PAGYVLLSNIYASAGRWID-----AMNVRKLMTE 682 (712)
Q Consensus 654 ~~~~~~l~~~~~~~g~~~e-----A~~~~~~~~~ 682 (712)
..++...++.+....-..+ |+++.++.++
T Consensus 286 v~al~g~Akc~~~~r~~~k~~~Crale~n~r~le 319 (518)
T KOG1941|consen 286 VEALDGAAKCLETLRLQNKICNCRALEFNTRLLE 319 (518)
T ss_pred HHHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 2344444444443333333 6666666554
No 270
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.24 E-value=0.21 Score=40.87 Aligned_cols=70 Identities=20% Similarity=0.217 Sum_probs=37.3
Q ss_pred hcCChHHHHHHHHhC-CCCCCHHHHHHH-HHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 005136 600 RSGRLSEAEDFINSM-PFEPDSNAWASL-LSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGR 669 (712)
Q Consensus 600 ~~g~~~~A~~~~~~~-~~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 669 (712)
..++.+++..++..+ ...|+......+ ...+...|++.+|.++++.+.+-.|..|..--.++.++...|+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 456666666666665 233432222222 1224566666666666666665555555555555555555554
No 271
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.22 E-value=0.13 Score=40.64 Aligned_cols=91 Identities=14% Similarity=0.134 Sum_probs=74.9
Q ss_pred HHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC----CchHHHHHHHHHhcC
Q 005136 595 VDMLSRSGRLSEAEDFINSM-PFE-PDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH----PAGYVLLSNIYASAG 668 (712)
Q Consensus 595 ~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g 668 (712)
+-++...|+.+.|++.|.+. ..- .....|+.-..++.-+|+.++|..-+.+++++.-+. ..+|..-+.+|...|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 45677899999999999886 333 457778888899999999999999999999985442 246778888899999
Q ss_pred CchhHHHHHHHHHhCCC
Q 005136 669 RWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 669 ~~~eA~~~~~~~~~~~~ 685 (712)
+-+.|+.-|+..-+-|.
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 99999999998888774
No 272
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.11 E-value=0.031 Score=47.24 Aligned_cols=128 Identities=17% Similarity=0.130 Sum_probs=81.1
Q ss_pred HHHHhhccchhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHHHHhhcCCCCcchHHHHHHHHHhcCChHHH
Q 005136 27 LLKDITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVKDLNGFDLVVHNCMINANIQWGNLEEA 106 (712)
Q Consensus 27 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 106 (712)
++..+.+.+.+.....+++.+.+.+...+....+.++..|++.++.+...++++.... .-...++..+.+.|.++.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 5666788889999999999999888777899999999999999888888888874333 3445666777777777777
Q ss_pred HHHHhhCCCCChhHHHHHHHHHHccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCC
Q 005136 107 QRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGF 164 (712)
Q Consensus 107 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~ 164 (712)
.-++.++...+...- .+...++++.|.+.+.+. ++...|..++..+...+.
T Consensus 90 ~~Ly~~~~~~~~al~-----i~~~~~~~~~a~e~~~~~--~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 90 VYLYSKLGNHDEALE-----ILHKLKDYEEAIEYAKKV--DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHCCTTHTTCSS-----TSSSTHCSCCCTTTGGGC--SSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHcccHHHHHH-----HHHHHccHHHHHHHHHhc--CcHHHHHHHHHHHHhcCc
Confidence 666654433211110 012223333333333332 245566666666655443
No 273
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.02 E-value=2.1 Score=37.69 Aligned_cols=159 Identities=14% Similarity=0.141 Sum_probs=83.3
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHH
Q 005136 517 EISWTVMVRGLAESGYAKESINLFEEMEKTSITPNE-LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVV 595 (712)
Q Consensus 517 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 595 (712)
+.+||-+.--+...|+++.|.+.|+...+ +.|.. .+...-.-++.-.|++..|.+-+...-+. +|+.+ |..|-
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~---D~~DP-fR~LW 172 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD---DPNDP-FRSLW 172 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHHHHHHhc---CCCCh-HHHHH
Confidence 34677777777788888888888888777 44432 22221222344567777777655554422 34222 22221
Q ss_pred H-HhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHH-HhhcCCHHHHHHHHHHHhccCCCC-------CchHHHHHHHHHh
Q 005136 596 D-MLSRSGRLSEAEDFINSMPFEPDSNAWASLLSG-CKTYKNEQIAERAVKNLWKLAEEH-------PAGYVLLSNIYAS 666 (712)
Q Consensus 596 ~-~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~ 666 (712)
- .-.+.-++.+|..-+..--...+..-|...+-. |..+=..+ .+++++.+-..++ .++|..|++-+..
T Consensus 173 LYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~ 249 (297)
T COG4785 173 LYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEE---TLMERLKADATDNTSLAEHLTETYFYLGKYYLS 249 (297)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHH---HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhc
Confidence 1 112344566776544332112333334333322 22111111 1222222222222 3578888888889
Q ss_pred cCCchhHHHHHHHHHhCC
Q 005136 667 AGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 667 ~g~~~eA~~~~~~~~~~~ 684 (712)
.|..++|..+|+-.+.-+
T Consensus 250 ~G~~~~A~~LfKLaiann 267 (297)
T COG4785 250 LGDLDEATALFKLAVANN 267 (297)
T ss_pred cccHHHHHHHHHHHHHHh
Confidence 999999988887665533
No 274
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.94 E-value=13 Score=41.73 Aligned_cols=80 Identities=8% Similarity=0.063 Sum_probs=40.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC
Q 005136 423 ISGYLEHKQFDLVFAVFNEMLLSGEIPNKS--TFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSG 500 (712)
Q Consensus 423 ~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 500 (712)
+.+|...|+|.+|+.+-.++... -+.. +-..|+..+...+++-+|-++..+.... ....+..|++..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~ 1040 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAK 1040 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHh
Confidence 44555566666666666655321 1111 1134555555566666655555443321 122334455666
Q ss_pred ChHHHHHHhccCC
Q 005136 501 DIESSRRVFDRMP 513 (712)
Q Consensus 501 ~~~~A~~~~~~~~ 513 (712)
.+++|.++.....
T Consensus 1041 ~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1041 EWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHHhcc
Confidence 6777766655544
No 275
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.89 E-value=3.7 Score=35.12 Aligned_cols=134 Identities=11% Similarity=0.094 Sum_probs=76.8
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcC
Q 005136 301 FRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEK 380 (712)
Q Consensus 301 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 380 (712)
.++++.+.+.+++|+...+..++..+.+.|.+.... .++..++-+|.......+-.+. +....+.++--+|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 456667777889999999999999999888866544 3444555555544443332221 2222333332233222
Q ss_pred CCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 005136 381 DVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEML 443 (712)
Q Consensus 381 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 443 (712)
- ...+..+++.+...|++-+|+++.+....-+......++.+..+.++...-..+|+-..
T Consensus 88 L---~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 88 L---GTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred h---hhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1 23456777788888888888777766544444444445555555555444444444333
No 276
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.85 E-value=5.7 Score=39.69 Aligned_cols=149 Identities=8% Similarity=0.024 Sum_probs=79.3
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC--chHH
Q 005136 516 NEISWTVMVRGLAESGYAKESINLFEEMEKTSITP---NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP--NGRH 590 (712)
Q Consensus 516 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~ 590 (712)
...+|..++..+.+.|+++.|...+.++...+..+ .......-+......|+..+|+..++..... .... +...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 44567778888888888888888888877643211 2223333445556677888888887777631 1111 1111
Q ss_pred HHHHHHHhhhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHhh------cCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 005136 591 YTCVVDMLSRSGRLSEAEDF-INSMPFEPDSNAWASLLSGCKT------YKNEQIAERAVKNLWKLAEEHPAGYVLLSNI 663 (712)
Q Consensus 591 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 663 (712)
...+...+.. ..+..... ........-...+..+...+.. .++.+++...++.+.+..|.....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 0000000001122222222223 4788999999999999999988888888888
Q ss_pred HHhc
Q 005136 664 YASA 667 (712)
Q Consensus 664 ~~~~ 667 (712)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 6644
No 277
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.73 E-value=0.085 Score=31.07 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=26.8
Q ss_pred chHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 655 AGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 655 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
.+|..+|.++...|++++|+..+++.++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4789999999999999999999999988543
No 278
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.70 E-value=11 Score=40.12 Aligned_cols=168 Identities=17% Similarity=0.184 Sum_probs=110.5
Q ss_pred HHHHhcCCChhHhHHHHhhcCC--C---CcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHccCChHHH
Q 005136 63 LIMYLGSRKSLEANEIVKDLNG--F---DLVVHNCMINANIQWGNLEEAQRLFDGMPERNEVSWTALISGFMKHGRVEES 137 (712)
Q Consensus 63 ~~~~~~~~~~~~a~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 137 (712)
++++.+.+.+++|..+.+.... | -..++...+..+...|++++|....-.|...+..-|..-+..+...+...+.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 6788888999999988887643 2 2247888899999999999999999999988888888888888888887777
Q ss_pred HHHhhhCCC-CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCC
Q 005136 138 MWYFERNPF-QNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFE 216 (712)
Q Consensus 138 ~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 216 (712)
..++-..++ -+...|..++..+.. .+ ....++...+. +...|..+...-+...++.+ . .
T Consensus 443 a~~lPt~~~rL~p~vYemvLve~L~-~~---~~~F~e~i~~W----p~~Lys~l~iisa~~~q~~q----------~--S 502 (846)
T KOG2066|consen 443 APYLPTGPPRLKPLVYEMVLVEFLA-SD---VKGFLELIKEW----PGHLYSVLTIISATEPQIKQ----------N--S 502 (846)
T ss_pred hccCCCCCcccCchHHHHHHHHHHH-HH---HHHHHHHHHhC----ChhhhhhhHHHhhcchHHHh----------h--c
Confidence 666655544 456678888888877 22 22223322221 22233322211111111111 0 1
Q ss_pred CCccHHHHHHHHHHccCChHHHHHHHhhcCCCCc
Q 005136 217 KHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDV 250 (712)
Q Consensus 217 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 250 (712)
-+......|+..|...+++..|.+++-...++++
T Consensus 503 e~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 503 ESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred cchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 1222333488888899999999999888776544
No 279
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.64 E-value=0.58 Score=37.17 Aligned_cols=92 Identities=18% Similarity=0.199 Sum_probs=70.5
Q ss_pred HHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCC----HHHHHHHHHHHh
Q 005136 559 LFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PF-EPD----SNAWASLLSGCK 631 (712)
Q Consensus 559 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~----~~~~~~l~~~~~ 631 (712)
.-+....|+.+.|++.|.+.. .+-| +...|+.-+.++--.|+.++|++-+++. .. .|. -..+..-...|.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal---~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQAL---CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHhccchHHHHHHHHHHH---HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 346778999999999999887 4466 8899999999999999999999988886 21 122 122333333477
Q ss_pred hcCCHHHHHHHHHHHhccCCCC
Q 005136 632 TYKNEQIAERAVKNLWKLAEEH 653 (712)
Q Consensus 632 ~~g~~~~a~~~~~~~~~~~p~~ 653 (712)
..|+.+.|..-|+.+.++....
T Consensus 127 l~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HhCchHHHHHhHHHHHHhCCHH
Confidence 8999999999999998876553
No 280
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.64 E-value=3.2 Score=35.51 Aligned_cols=132 Identities=10% Similarity=0.052 Sum_probs=78.2
Q ss_pred hHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHHHHhhcCCCCcchHHHHHHHHHhc--CChHHHHHHHhhCCCCChh
Q 005136 42 ALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVKDLNGFDLVVHNCMINANIQW--GNLEEAQRLFDGMPERNEV 119 (712)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~ 119 (712)
+...-+.+.|+.|+...+..+++.+.+.|.+..-..++..-.-+|.......+..+... .-.+-|.+++.++..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~---- 90 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT---- 90 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh----
Confidence 44445567788888888888888888888888777777766545544333433333221 113444555555442
Q ss_pred HHHHHHHHHHccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 005136 120 SWTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLE 177 (712)
Q Consensus 120 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 177 (712)
.+..++..+...|++-+|.++.......+...-..++.+..+.++...-..+|.-..+
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2334456666777777777777665444444455566666666665554444444443
No 281
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.64 E-value=0.55 Score=42.84 Aligned_cols=100 Identities=11% Similarity=0.063 Sum_probs=68.6
Q ss_pred CCcccHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccc----------------chHHHHH
Q 005136 147 QNVISWTAAICGFVQ-----NGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEIN----------------DFRLGLS 205 (712)
Q Consensus 147 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~----------------~~~~a~~ 205 (712)
.|-.+|...+..+.. .+..+-....+..|.+-|+..|..+|+.|+..+-+.. +-+=+.+
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 344445555544432 3455556667788888888888888888887665432 2344778
Q ss_pred HHHHHHHhCCCCCccHHHHHHHHHHccCCh-HHHHHHHhhcC
Q 005136 206 VFGLIFKAGFEKHVSVCNSLITLSLKMGEV-DLARSVFDRME 246 (712)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~ 246 (712)
++++|..+|+-||..+-..|+.++.+.+.. .+..++.-.|.
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 999999999999999999999998877653 34444444444
No 282
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.55 E-value=13 Score=40.32 Aligned_cols=452 Identities=8% Similarity=0.005 Sum_probs=220.7
Q ss_pred hcCCChhHhHHHHhhcCCCCcch---HHHHHHHHHhcCChHHHHHHHhhCCC-CCh-hHHHHHHHHHHccCChHHHHHHh
Q 005136 67 LGSRKSLEANEIVKDLNGFDLVV---HNCMINANIQWGNLEEAQRLFDGMPE-RNE-VSWTALISGFMKHGRVEESMWYF 141 (712)
Q Consensus 67 ~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~l~~~~~~~g~~~~a~~~~ 141 (712)
.+.|++..+..+-.++....... |..+...+ .....++...++++-.. |-. ..-...+..+.+.+++..... |
T Consensus 44 ~~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l-~~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~-~ 121 (644)
T PRK11619 44 WDNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDL-MNQPAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLA-F 121 (644)
T ss_pred HHCCCHHHHHHHHHhccCCCcHhHHHHHHHHhcc-ccCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHH-h
Confidence 46677777777776664333322 22222221 23356666677766554 322 222334555667888888887 4
Q ss_pred hhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccH
Q 005136 142 ERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSV 221 (712)
Q Consensus 142 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 221 (712)
..-++.+...-.....+....|+.++|......+-..|.. .+..+..++..+...|... +...
T Consensus 122 ~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt----------------~~d~ 184 (644)
T PRK11619 122 SPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQD----------------PLAY 184 (644)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCC----------------HHHH
Confidence 4333456666667777888888888887777777665533 3344555555554433222 2222
Q ss_pred HHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHH--HhcCChhH
Q 005136 222 CNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARY--NQSGYPEE 299 (712)
Q Consensus 222 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~ 299 (712)
+.. +......|+...|..+...+..........++..+.+ ...+..++.... ++...-..++.++ ....+.+.
T Consensus 185 w~R-~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~---p~~~~~~~~~~~-~~~~~~~~~~~~l~Rlar~d~~~ 259 (644)
T PRK11619 185 LER-IRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQND---PNTVETFARTTG-PTDFTRQMAAVAFASVARQDAEN 259 (644)
T ss_pred HHH-HHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHC---HHHHHHHhhccC-CChhhHHHHHHHHHHHHHhCHHH
Confidence 222 3344456666666666665532211122233333322 222333322221 1111111111111 23455688
Q ss_pred HHHHHHHHHhCC-CCCCHH--HHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHh
Q 005136 300 AFRLFRQMTRYS-FKPNTS--CFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDS 376 (712)
Q Consensus 300 a~~~~~~m~~~~-~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 376 (712)
|..++....... ..+... ....+.......+...++...+....... .+.....--+......++++.+...+..
T Consensus 260 A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~ 337 (644)
T PRK11619 260 ARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLAR 337 (644)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHh
Confidence 888887764432 322222 12222222222221444444444433221 2344444455566678888888888888
Q ss_pred hhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHH
Q 005136 377 IVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQF-DLVFAVFNEMLLSGEIPNKSTFS 455 (712)
Q Consensus 377 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~g~~p~~~~~~ 455 (712)
|.........-.--+.+++...|+.++|...|+.+..+ ...|..+...-. |.. .-....... ....+..++ -.
T Consensus 338 L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~-~~fYG~LAa~~L--g~~~~~~~~~~~~-~~~~~~~~~--~~ 411 (644)
T PRK11619 338 LPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ-RGFYPMVAAQRL--GEEYPLKIDKAPK-PDSALTQGP--EM 411 (644)
T ss_pred cCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC-CCcHHHHHHHHc--CCCCCCCCCCCCc-hhhhhccCh--HH
Confidence 75433223334445666666678888888888887553 223333322221 111 000000000 000000000 11
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC------CCcchHHHHHHHHHH
Q 005136 456 SVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPD------KNEISWTVMVRGLAE 529 (712)
Q Consensus 456 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~ 529 (712)
.-+..+...|....|...+..+.+. .+......+.......|..+.+......... .-+..|...+..+..
T Consensus 412 ~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~ 488 (644)
T PRK11619 412 ARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTS 488 (644)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHH
Confidence 2233445667788888777777663 2334455556666677777777665544321 112234555555555
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHH
Q 005136 530 SGYAKESINLFEEMEKTSITPNEL 553 (712)
Q Consensus 530 ~~~~~~A~~~~~~~~~~~~~p~~~ 553 (712)
.-.++.++-.----.++++.|+..
T Consensus 489 ~~~v~~~lv~ai~rqES~f~p~a~ 512 (644)
T PRK11619 489 GKGIPQSYAMAIARQESAWNPKAR 512 (644)
T ss_pred HcCCCHHHHHHHHHHhcCCCCCCc
Confidence 555555543333334556666644
No 283
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.48 E-value=6 Score=36.22 Aligned_cols=75 Identities=15% Similarity=-0.008 Sum_probs=45.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCC--CCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHH
Q 005136 156 ICGFVQNGFSFEALKLFLKLLESGV--KPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSL 230 (712)
Q Consensus 156 i~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 230 (712)
+..-.+.|++++|.+.|+.+...-. +-...+...++.++.+.++++.|+...++..+.-+......|...|.+++
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 3344667777777777777765421 11234455566666677777777777777776654444445555555544
No 284
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.44 E-value=0.14 Score=47.81 Aligned_cols=110 Identities=10% Similarity=0.084 Sum_probs=78.3
Q ss_pred HHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHhhcC
Q 005136 558 VLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSMP-FE-PDSNAWASLLSGCKTYK 634 (712)
Q Consensus 558 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~g 634 (712)
-..-|.+.|.+++|+..|.... ...| |+.++..-+.+|.+..++..|..-++..- .. .-...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 4557889999999999998877 5577 88888888999999999988877666542 11 11223333344445678
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHH
Q 005136 635 NEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAM 674 (712)
Q Consensus 635 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~ 674 (712)
+..+|.+-++.++++.|++.+ |-..+.+.....|+.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~ 215 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIE----LKKSLARINSLRERK 215 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhh
Confidence 899999999999999999654 444555554444443
No 285
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.42 E-value=2.2 Score=38.02 Aligned_cols=99 Identities=6% Similarity=-0.050 Sum_probs=51.8
Q ss_pred HHHHHHhhhc-CChHHHHHHHHhCC-----CCCC---HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 005136 592 TCVVDMLSRS-GRLSEAEDFINSMP-----FEPD---SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSN 662 (712)
Q Consensus 592 ~~l~~~~~~~-g~~~~A~~~~~~~~-----~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 662 (712)
..++..|... .++++|+..++... .+.+ ...+..+...-...+++.+|+.+|+++....-+|+-.-+..-.
T Consensus 117 ~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kd 196 (288)
T KOG1586|consen 117 IEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKD 196 (288)
T ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHH
Confidence 3456666544 67777777777651 1111 1222233333456788888999888887766665533332222
Q ss_pred H-----HHhcCCchhHHHHHHHHHhCCCccCCccc
Q 005136 663 I-----YASAGRWIDAMNVRKLMTEKGLRKSGGCS 692 (712)
Q Consensus 663 ~-----~~~~g~~~eA~~~~~~~~~~~~~~~~~~~ 692 (712)
- +++.-+.++ +. .++.+++...-+|.++
T Consensus 197 yflkAgLChl~~~D~-v~-a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 197 YFLKAGLCHLCKADE-VN-AQRALEKYQELDPAFT 229 (288)
T ss_pred HHHHHHHHhHhcccH-HH-HHHHHHHHHhcCCccc
Confidence 2 223222221 22 2345555555666544
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.41 E-value=1.9 Score=36.25 Aligned_cols=108 Identities=12% Similarity=0.083 Sum_probs=54.3
Q ss_pred cccCcHHHHHHHHHhcchhcCCCCc-hHHHHHHHHHhhhcCChHHHHHHHHhCCC-CCCHHHHHHHHHHHhhcCCHHHHH
Q 005136 563 SHSGLVDKGLKYFNSMEPIYNIKPN-GRHYTCVVDMLSRSGRLSEAEDFINSMPF-EPDSNAWASLLSGCKTYKNEQIAE 640 (712)
Q Consensus 563 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~ 640 (712)
...++.+.+..+++.+. -+.|. ...-..-+..+.+.|+|.+|..+|+++.. .|....-..++..|.....-..=.
T Consensus 21 l~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 35566777777776665 34663 33334445667777888888888877732 333333344444444333222223
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHH
Q 005136 641 RAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMN 675 (712)
Q Consensus 641 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~ 675 (712)
.+..++++..++ +.+. .|...+........|..
T Consensus 98 ~~A~evle~~~d-~~a~-~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 98 RYADEVLESGAD-PDAR-ALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHhcCCC-hHHH-HHHHHHHHhccccchhh
Confidence 334444444443 3322 33334433333334443
No 287
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.40 E-value=3.5 Score=41.50 Aligned_cols=99 Identities=12% Similarity=0.164 Sum_probs=66.8
Q ss_pred HHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhCCC--CCCHHH--HHHHHHHHh
Q 005136 556 LSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSMPF--EPDSNA--WASLLSGCK 631 (712)
Q Consensus 556 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~--~~~l~~~~~ 631 (712)
..+..++.+.|..++|++.++++.+......+......|+.+|...+.+.++..++.+... -|...+ |...+-...
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 3566677788999999999999874432222455777899999999999999999998842 344333 444333333
Q ss_pred hcCC---------------HHHHHHHHHHHhccCCCCC
Q 005136 632 TYKN---------------EQIAERAVKNLWKLAEEHP 654 (712)
Q Consensus 632 ~~g~---------------~~~a~~~~~~~~~~~p~~~ 654 (712)
..++ ...|.+.++++++.+|.-|
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 3332 2346688889888777644
No 288
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.89 E-value=0.11 Score=30.24 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=19.0
Q ss_pred hHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 656 GYVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 656 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
++..++.++.+.|++++|++.++++++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4556677777777777777777776654
No 289
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.85 E-value=2.2 Score=36.09 Aligned_cols=118 Identities=12% Similarity=0.109 Sum_probs=76.9
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHH--HHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHH-----HHHHhh
Q 005136 527 LAESGYAKESINLFEEMEKTSITPNELTI--LSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTC-----VVDMLS 599 (712)
Q Consensus 527 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~-----l~~~~~ 599 (712)
+.+.+..++|+.-|..+.+.|... ...+ ..........|+...|+..|+++-.+ .|.+....- -+..+.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~-YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lLv 143 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGS-YPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLLV 143 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCc-chHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHHh
Confidence 567788999999999998876432 1222 22233456788999999999988744 333332222 234556
Q ss_pred hcCChHHHHHHHHhCCC--CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 005136 600 RSGRLSEAEDFINSMPF--EPD-SNAWASLLSGCKTYKNEQIAERAVKNLWK 648 (712)
Q Consensus 600 ~~g~~~~A~~~~~~~~~--~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 648 (712)
..|.+++....++.+.. .|- ...-..|.-+-.+.|++..|...|..+.+
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 78888888888887732 232 22234455556788888888888888766
No 290
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.80 E-value=1.2 Score=38.48 Aligned_cols=93 Identities=11% Similarity=0.092 Sum_probs=64.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHH------HHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHH
Q 005136 524 VRGLAESGYAKESINLFEEMEKTSITPNEL------TILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVD 596 (712)
Q Consensus 524 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 596 (712)
..-+...|++++|..-|.+.++ +.|... .|..-..++.+.+.++.|+.-..+.. .+.| ....+..-+.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKai---el~pty~kAl~RRAe 176 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAI---ELNPTYEKALERRAE 176 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhH---hcCchhHHHHHHHHH
Confidence 3457788999999999988888 344332 24444456677888888888777766 4455 3444445567
Q ss_pred HhhhcCChHHHHHHHHhC-CCCCCHH
Q 005136 597 MLSRSGRLSEAEDFINSM-PFEPDSN 621 (712)
Q Consensus 597 ~~~~~g~~~~A~~~~~~~-~~~p~~~ 621 (712)
+|.+..++++|++=|+++ ...|...
T Consensus 177 ayek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCcchH
Confidence 888888889998888887 4456543
No 291
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.71 E-value=0.21 Score=29.35 Aligned_cols=28 Identities=11% Similarity=-0.064 Sum_probs=13.4
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCC
Q 005136 624 ASLLSGCKTYKNEQIAERAVKNLWKLAE 651 (712)
Q Consensus 624 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p 651 (712)
..+...|...|++++|...++++++++|
T Consensus 5 ~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 5 YNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3334444445555555555555554444
No 292
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.63 E-value=0.012 Score=49.82 Aligned_cols=83 Identities=17% Similarity=0.142 Sum_probs=54.4
Q ss_pred HHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHH
Q 005136 457 VLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKES 536 (712)
Q Consensus 457 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 536 (712)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.... .-...++..|.+.|.++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4555666677777777777777666566777788888888888777888887774333 3334455666666666666
Q ss_pred HHHHHH
Q 005136 537 INLFEE 542 (712)
Q Consensus 537 ~~~~~~ 542 (712)
.-++.+
T Consensus 90 ~~Ly~~ 95 (143)
T PF00637_consen 90 VYLYSK 95 (143)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 666654
No 293
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.60 E-value=1.2 Score=40.86 Aligned_cols=101 Identities=14% Similarity=0.191 Sum_probs=72.4
Q ss_pred CCCcccHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----------------chHHHH
Q 005136 413 KRNDVSWSAIISGYLEH-----KQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVA----------------SLEKGK 471 (712)
Q Consensus 413 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~----------------~~~~a~ 471 (712)
++|-.+|-..+..+... +.++-....++.|.+-|+.-|..+|..|+..+-+.. +-+-+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 34445555555555432 345555677788889999999999999998876543 235688
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHhcCCh-HHHHHHhccCC
Q 005136 472 DLHGKIIKLGFPYDVFLGTALTDTYAKSGDI-ESSRRVFDRMP 513 (712)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 513 (712)
+++++|...|+.||..+-..|+.++++.+-. ....++.--|+
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 9999999999999999999999999888764 33444443443
No 294
>PRK09687 putative lyase; Provisional
Probab=92.21 E-value=11 Score=35.97 Aligned_cols=18 Identities=6% Similarity=-0.084 Sum_probs=8.7
Q ss_pred CccHHHHHHHHHHccCCh
Q 005136 218 HVSVCNSLITLSLKMGEV 235 (712)
Q Consensus 218 ~~~~~~~li~~~~~~~~~ 235 (712)
+..+-...+.++.+.++.
T Consensus 141 ~~~VR~~a~~aLg~~~~~ 158 (280)
T PRK09687 141 STNVRFAVAFALSVINDE 158 (280)
T ss_pred CHHHHHHHHHHHhccCCH
Confidence 444444555555555543
No 295
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.19 E-value=14 Score=37.29 Aligned_cols=151 Identities=14% Similarity=0.201 Sum_probs=70.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC
Q 005136 422 IISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGD 501 (712)
Q Consensus 422 l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 501 (712)
++..+.....+.-+..+-.+|+.-| .+...|..++..|... ..+.-..+|+++.+..+ .|...-..|+..|.+ ++
T Consensus 72 ~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~yEk-ik 146 (711)
T COG1747 72 LLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKYEK-IK 146 (711)
T ss_pred HHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHHHH-hc
Confidence 3333333333333455555555543 4445555566555555 44555556665555432 233333444444444 55
Q ss_pred hHHHHHHhccCCCC------Cc---chHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHhcccCcHHHH
Q 005136 502 IESSRRVFDRMPDK------NE---ISWTVMVRGLAESGYAKESINLFEEMEKT-SITPNELTILSVLFACSHSGLVDKG 571 (712)
Q Consensus 502 ~~~A~~~~~~~~~~------~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a 571 (712)
.+.+..+|..+... +. ..|..+.. .-..+.+..+.+..++... |..--.+.+.-+-.-|....++++|
T Consensus 147 ~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~ea 224 (711)
T COG1747 147 KSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEA 224 (711)
T ss_pred hhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHH
Confidence 55555555543310 00 02222221 0123444444554444432 2222334444455556666677777
Q ss_pred HHHHHhcc
Q 005136 572 LKYFNSME 579 (712)
Q Consensus 572 ~~~~~~~~ 579 (712)
++++..+.
T Consensus 225 i~Ilk~il 232 (711)
T COG1747 225 IRILKHIL 232 (711)
T ss_pred HHHHHHHh
Confidence 77776665
No 296
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.05 E-value=0.78 Score=42.87 Aligned_cols=59 Identities=15% Similarity=0.202 Sum_probs=35.5
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 624 ASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 624 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
..++..+...|+.+.+...++++++.+|-+-..|..+..+|.+.|+...|+..++++.+
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 33444455556666666666666666666666666666666666666666666665543
No 297
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.02 E-value=0.18 Score=27.45 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=20.5
Q ss_pred CchHHHHHHHHHhcCCchhHHHHHH
Q 005136 654 PAGYVLLSNIYASAGRWIDAMNVRK 678 (712)
Q Consensus 654 ~~~~~~l~~~~~~~g~~~eA~~~~~ 678 (712)
|.+...|+.++...|++++|..+++
T Consensus 1 ~~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 1 PRARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3467788999999999999988875
No 298
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.92 E-value=4.4 Score=35.26 Aligned_cols=86 Identities=9% Similarity=-0.040 Sum_probs=38.7
Q ss_pred HhcccCcHHHHHHHHHhcchhcCCCCchH----HHHHHHHHhhhcCChHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcC
Q 005136 561 ACSHSGLVDKGLKYFNSMEPIYNIKPNGR----HYTCVVDMLSRSGRLSEAEDFINSMPFEPD--SNAWASLLSGCKTYK 634 (712)
Q Consensus 561 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~--~~~~~~l~~~~~~~g 634 (712)
.+...|++++|...++..... +.|.. .--.|++.....|.+++|+..++... .++ ......-...+...|
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDill~kg 173 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDILLAKG 173 (207)
T ss_pred HHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHHHHcC
Confidence 445556666666555544411 11111 11234445555566666666555543 111 111122222345555
Q ss_pred CHHHHHHHHHHHhccC
Q 005136 635 NEQIAERAVKNLWKLA 650 (712)
Q Consensus 635 ~~~~a~~~~~~~~~~~ 650 (712)
+.++|...|+++++..
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 5555555555555544
No 299
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.90 E-value=3.7 Score=41.30 Aligned_cols=76 Identities=11% Similarity=0.023 Sum_probs=50.8
Q ss_pred hHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHhhcCCHHHHHHHHHHHhcc-CCCCCchHHHHHH
Q 005136 588 GRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD---SNAWASLLSGCKTYKNEQIAERAVKNLWKL-AEEHPAGYVLLSN 662 (712)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~p~~~~~~~~l~~ 662 (712)
..+-..++.+.-+.|+.++|++.++++ +..|. ......++.++...+.+.++..++.+--+. .|.+..+.++-+-
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 334455777777888888888888887 33332 345567778888888888888888886443 3555555554443
Q ss_pred H
Q 005136 663 I 663 (712)
Q Consensus 663 ~ 663 (712)
+
T Consensus 339 L 339 (539)
T PF04184_consen 339 L 339 (539)
T ss_pred H
Confidence 3
No 300
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.70 E-value=12 Score=40.46 Aligned_cols=33 Identities=24% Similarity=0.414 Sum_probs=21.2
Q ss_pred chHHHHHHHH-----HhhhcCChHHHHHHHHhCCCCCC
Q 005136 587 NGRHYTCVVD-----MLSRSGRLSEAEDFINSMPFEPD 619 (712)
Q Consensus 587 ~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~p~ 619 (712)
+..++..|.+ -+...|++++|++.++++++-|.
T Consensus 499 ~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~liP~ 536 (613)
T PF04097_consen 499 NRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLDLIPL 536 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-S-S
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence 3445554433 34689999999999999987773
No 301
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.61 E-value=5.9 Score=39.59 Aligned_cols=66 Identities=15% Similarity=0.209 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC----CCCchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 618 PDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAE----EHPAGYVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 618 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
....+|..++..+.++|.++.|...+.++....+ ..|.+...-++.++..|+..+|+..++..++.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3467788889999999999999999999987652 25788889999999999999999999988873
No 302
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.58 E-value=3.5 Score=37.15 Aligned_cols=58 Identities=12% Similarity=-0.008 Sum_probs=36.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhc------cCCCCCchHHHHHHHHHhcCCchhHHHHHHHH
Q 005136 623 WASLLSGCKTYKNEQIAERAVKNLWK------LAEEHPAGYVLLSNIYASAGRWIDAMNVRKLM 680 (712)
Q Consensus 623 ~~~l~~~~~~~g~~~~a~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 680 (712)
+..+...+.+...+++|-..+.+-.. ..|.--..+...+.++....++..|...++.-
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~ 216 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDC 216 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcch
Confidence 34444456666677776666655432 22333345777777788888888888887644
No 303
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.33 E-value=0.33 Score=29.04 Aligned_cols=27 Identities=11% Similarity=-0.075 Sum_probs=18.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhcc
Q 005136 623 WASLLSGCKTYKNEQIAERAVKNLWKL 649 (712)
Q Consensus 623 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 649 (712)
+..+...|.+.|++++|+.++++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556677777888888888888885543
No 304
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.33 E-value=12 Score=34.78 Aligned_cols=59 Identities=14% Similarity=-0.006 Sum_probs=53.6
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 624 ASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 624 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
......|...|.+.+|.++.++++.++|-+...+-.|..+|...|+--+|.+.++++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 44455688999999999999999999999999999999999999999999999998865
No 305
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.24 E-value=14 Score=35.30 Aligned_cols=20 Identities=15% Similarity=0.091 Sum_probs=16.4
Q ss_pred HHHHHhcCCchhHHHHHHHH
Q 005136 661 SNIYASAGRWIDAMNVRKLM 680 (712)
Q Consensus 661 ~~~~~~~g~~~eA~~~~~~~ 680 (712)
+..+.++++|++|.++++-.
T Consensus 253 ~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 253 GKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHhhcCHHHHHHHHHHH
Confidence 55577899999999999844
No 306
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=91.14 E-value=0.56 Score=41.75 Aligned_cols=87 Identities=11% Similarity=0.072 Sum_probs=62.4
Q ss_pred HHhhhcCChHHHHHHHHhC-CCCCCHHH-HHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhH
Q 005136 596 DMLSRSGRLSEAEDFINSM-PFEPDSNA-WASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDA 673 (712)
Q Consensus 596 ~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA 673 (712)
+.|....++..|+..+.+. .+.|...+ |..-+.++.+..+++.+.+-.++++++.|+..-.++.|+..+.....+++|
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHH
Confidence 3444556677777766655 55676544 344455566778888888888888888888888888888888888888888
Q ss_pred HHHHHHHHh
Q 005136 674 MNVRKLMTE 682 (712)
Q Consensus 674 ~~~~~~~~~ 682 (712)
+..+++..+
T Consensus 98 I~~Lqra~s 106 (284)
T KOG4642|consen 98 IKVLQRAYS 106 (284)
T ss_pred HHHHHHHHH
Confidence 888887744
No 307
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.14 E-value=6.7 Score=34.16 Aligned_cols=91 Identities=12% Similarity=0.023 Sum_probs=55.6
Q ss_pred HHHHHhhhcCChHHHHHHHHhCCCCCCHHHH-----HHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 005136 593 CVVDMLSRSGRLSEAEDFINSMPFEPDSNAW-----ASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASA 667 (712)
Q Consensus 593 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 667 (712)
.++..++..|++++|...++..-..|....+ ..+.......|.+++|...+....+..- .+.....-|.++...
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~k 172 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHc
Confidence 3456677777888877777755322322222 3344445677777777776665433211 123455667777778
Q ss_pred CCchhHHHHHHHHHhCC
Q 005136 668 GRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 668 g~~~eA~~~~~~~~~~~ 684 (712)
|+..+|+.-|++.++.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 88888888777777765
No 308
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.97 E-value=0.41 Score=27.73 Aligned_cols=31 Identities=13% Similarity=-0.057 Sum_probs=24.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 005136 623 WASLLSGCKTYKNEQIAERAVKNLWKLAEEH 653 (712)
Q Consensus 623 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 653 (712)
+..+..++...|++++|...++++++..|++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 3455666778899999999999999988874
No 309
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=90.80 E-value=0.15 Score=30.01 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=18.6
Q ss_pred CCC-chHHHHHHHHHhhhcCChHHHH
Q 005136 584 IKP-NGRHYTCVVDMLSRSGRLSEAE 608 (712)
Q Consensus 584 ~~p-~~~~~~~l~~~~~~~g~~~~A~ 608 (712)
+.| +...|..++.+|...|++++|+
T Consensus 8 ~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 8 LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 356 6777788888888888877775
No 310
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.60 E-value=11 Score=36.31 Aligned_cols=60 Identities=13% Similarity=0.081 Sum_probs=37.2
Q ss_pred HHHHHHHHHCCCCCCH--HHHHHHHHHHhccCc--hHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 005136 436 FAVFNEMLLSGEIPNK--STFSSVLCASASVAS--LEKGKDLHGKIIKLGFPYDVFLGTALTDT 495 (712)
Q Consensus 436 ~~~~~~~~~~g~~p~~--~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 495 (712)
...|+.+...|...+. ...+.++..+..... ..++..+++.+.+.|+++....|..+.-.
T Consensus 163 E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 163 EQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 7788888887766543 333444433333222 34677888888888888777776655543
No 311
>PRK09687 putative lyase; Provisional
Probab=90.57 E-value=16 Score=34.83 Aligned_cols=22 Identities=5% Similarity=-0.012 Sum_probs=9.3
Q ss_pred HHhhcCCHHHHHHHHHHHhccCC
Q 005136 629 GCKTYKNEQIAERAVKNLWKLAE 651 (712)
Q Consensus 629 ~~~~~g~~~~a~~~~~~~~~~~p 651 (712)
++...|+. +|...+.++.+.+|
T Consensus 244 ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 244 AAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHhcCCH-hHHHHHHHHHhhCC
Confidence 33334442 34444444444444
No 312
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.56 E-value=0.47 Score=27.75 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=26.3
Q ss_pred chHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 655 AGYVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 655 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
.++..++.+|...|++++|.+.+++.++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 47889999999999999999999998774
No 313
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=90.25 E-value=8.5 Score=31.06 Aligned_cols=60 Identities=13% Similarity=0.173 Sum_probs=34.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCC
Q 005136 422 IISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGF 482 (712)
Q Consensus 422 l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 482 (712)
.+......|+-+.-.+++.++.+. -.+++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 344555555555557777776642 356667777777777777777777777777766653
No 314
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.07 E-value=0.5 Score=29.27 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=23.7
Q ss_pred chHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 655 AGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 655 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
.++..|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678899999999999999999998876
No 315
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.91 E-value=2 Score=40.28 Aligned_cols=60 Identities=15% Similarity=0.257 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhc
Q 005136 351 VFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDN 410 (712)
Q Consensus 351 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 410 (712)
..++..++..+...|+.+.+...++++...++-+...|..++.+|.+.|+...|+..++.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~ 212 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQ 212 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 456777888888899999999999999988888888888999998888888888555544
No 316
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=89.72 E-value=6 Score=29.96 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=34.8
Q ss_pred HHHHHccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 005136 125 ISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESG 179 (712)
Q Consensus 125 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 179 (712)
+..+..+|+|++|..+.+....||...|-.+-. .+.|--+.+..-+.+|-.+|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 445667777777777777777777777766654 35555565666666666554
No 317
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.66 E-value=0.89 Score=42.74 Aligned_cols=96 Identities=13% Similarity=0.129 Sum_probs=64.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhc
Q 005136 524 VRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRS 601 (712)
Q Consensus 524 ~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 601 (712)
.+.|.+.|.+++|+..|...+. +.| |.+++..-..+|.+...+..|..-...... +.- -...|..-+.+-...
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---Ld~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---LDKLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---hhHHHHHHHHHHHHHHHHH
Confidence 4569999999999999998887 677 888888888899999888877766665541 111 122333333333445
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHH
Q 005136 602 GRLSEAEDFINSM-PFEPDSNAWA 624 (712)
Q Consensus 602 g~~~~A~~~~~~~-~~~p~~~~~~ 624 (712)
|+..+|.+-++.. ..+|...-+.
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ELk 202 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIELK 202 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHHHH
Confidence 6666666666654 5677754443
No 318
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=89.37 E-value=1.4 Score=41.96 Aligned_cols=217 Identities=11% Similarity=0.016 Sum_probs=101.8
Q ss_pred hccCchHHHHHHHHHHHHc--CCCCchhhHHHHHHHHHhcCChHHHHHHhcc----CC---CCC--cchHHHHHHHHHHc
Q 005136 462 ASVASLEKGKDLHGKIIKL--GFPYDVFLGTALTDTYAKSGDIESSRRVFDR----MP---DKN--EISWTVMVRGLAES 530 (712)
Q Consensus 462 ~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~----~~---~~~--~~~~~~l~~~~~~~ 530 (712)
....+.+++...|...... +......++..+..+..+.|.++++...--. .. +.+ ...|..+.+++.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777665432 1122334455566666666666665443211 11 111 12334444444444
Q ss_pred CChHHHHHHHHHHHHc-CCCCC---HHHHHHHHHHhcccCcHHHHHHHHHhcchhcCC--CC--chHHHHHHHHHhhhcC
Q 005136 531 GYAKESINLFEEMEKT-SITPN---ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNI--KP--NGRHYTCVVDMLSRSG 602 (712)
Q Consensus 531 ~~~~~A~~~~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~p--~~~~~~~l~~~~~~~g 602 (712)
.++.+++.+-+.-... |..|. .....++..+....+.++++++.|+...+-..- +| ...++..|+..|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 4444444444333221 22221 122334445555566667777766665421111 11 2335566666666666
Q ss_pred ChHHHHHHHHhC-------CCCCCH-----HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC-----C----CchHHHHH
Q 005136 603 RLSEAEDFINSM-------PFEPDS-----NAWASLLSGCKTYKNEQIAERAVKNLWKLAEE-----H----PAGYVLLS 661 (712)
Q Consensus 603 ~~~~A~~~~~~~-------~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~-----~----~~~~~~l~ 661 (712)
++++|..+..+. ....=. .....+.-++...|..-.|.+..+++.+ - | ......++
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~k---lal~~Gdra~~arc~~~~a 253 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMK---LALQHGDRALQARCLLCFA 253 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH---HHHHhCChHHHHHHHHHHH
Confidence 666665554443 111111 1112223335556666666666665432 1 1 11233455
Q ss_pred HHHHhcCCchhHHHHHHHHH
Q 005136 662 NIYASAGRWIDAMNVRKLMT 681 (712)
Q Consensus 662 ~~~~~~g~~~eA~~~~~~~~ 681 (712)
.+|...|+.+.|..-|+...
T Consensus 254 DIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 254 DIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHhcccHhHHHHHHHHHH
Confidence 66666666666655555443
No 319
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.25 E-value=7.1 Score=40.18 Aligned_cols=123 Identities=15% Similarity=0.115 Sum_probs=66.9
Q ss_pred hcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHh
Q 005136 498 KSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNS 577 (712)
Q Consensus 498 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 577 (712)
-.|+++.|..++-.++++ ..+.++..+...|-.++|+++ .+|..- -.....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHHHh
Confidence 346666666666555522 233445555566655555543 222211 11223456777777777665
Q ss_pred cchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 005136 578 MEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWK 648 (712)
Q Consensus 578 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 648 (712)
.. +..-|..|+++....|++..|.+.|.+.. .|..|+-.+...|+.+....+...+.+
T Consensus 663 ~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~ 720 (794)
T KOG0276|consen 663 AN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKK 720 (794)
T ss_pred hc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHh
Confidence 54 55667777777777777777777777653 123333344444554444444444333
No 320
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.18 E-value=3.4 Score=42.39 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=12.8
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHH
Q 005136 150 ISWTAAICGFVQNGFSFEALKLFLKL 175 (712)
Q Consensus 150 ~~~~~li~~~~~~g~~~~A~~~~~~m 175 (712)
.-|..|..+....|++..|.+.|.+.
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhh
Confidence 34445555555555555555554443
No 321
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.95 E-value=2.1 Score=37.49 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=52.2
Q ss_pred hcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC----CCchHHHHHHHHHhcCCchhH
Q 005136 600 RSGRLSEAEDFINSMPFEP--DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEE----HPAGYVLLSNIYASAGRWIDA 673 (712)
Q Consensus 600 ~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~eA 673 (712)
+.|+ ++|...|-.+.-.| +.......+..|....|.++++.++-+++++.+. ||+++..|+.++.+.|++++|
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4444 56777766663333 2333444555566788899999999999887433 588999999999999998887
Q ss_pred H
Q 005136 674 M 674 (712)
Q Consensus 674 ~ 674 (712)
-
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 4
No 322
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.74 E-value=14 Score=31.49 Aligned_cols=116 Identities=13% Similarity=0.188 Sum_probs=53.5
Q ss_pred HhcCChHHHHHHhccCCCCCcchHHHHH-----HHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHH--HhcccCcH
Q 005136 497 AKSGDIESSRRVFDRMPDKNEISWTVMV-----RGLAESGYAKESINLFEEMEKTSITPNEL-TILSVLF--ACSHSGLV 568 (712)
Q Consensus 497 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~--~~~~~g~~ 568 (712)
.+.+..++|..-|..+.+.+.-.|..|. ....+.|+...|...|++.-...-.|-.. -...|-. .+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 3445555666555555554444443332 22345555666666666555432222221 1112211 23345555
Q ss_pred HHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC
Q 005136 569 DKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM 614 (712)
Q Consensus 569 ~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 614 (712)
+....-.+-+.. .-.| ....-..|+-+-.+.|++.+|.++|..+
T Consensus 149 ~dV~srvepLa~--d~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 149 DDVSSRVEPLAG--DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHHHhhhccC--CCChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 555555554431 1112 3333444555555566666666665554
No 323
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.71 E-value=12 Score=35.95 Aligned_cols=136 Identities=14% Similarity=0.214 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHHhCCCCCccHHHHHHHHHHc--cC----ChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 005136 200 FRLGLSVFGLIFKAGFEKHVSVCNSLITLSLK--MG----EVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIF 273 (712)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~----~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 273 (712)
+++...+++.+.+.|+.-+..+|-+....... .. ....+..+++.|++.-+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~----------------------- 134 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHP----------------------- 134 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCc-----------------------
Confidence 44566677777777777777665543333222 11 23345555555543111
Q ss_pred hhCCCCCceeHHHHHHHHHhcCC----hhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHhccCC--hhhHHHHHHHHHHc
Q 005136 274 DEMPERNEVSWSVMIARYNQSGY----PEEAFRLFRQMTRYSFKPNTS--CFSIVLSALASLKA--LRSGMHVHAHVLKI 345 (712)
Q Consensus 274 ~~~~~~~~~~~~~l~~~~~~~~~----~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~ 345 (712)
-+..++-.++..++.. ..++ .+.+..+|+.+...|+..+.. ..+.++..+..... ...+.++++.+.+.
T Consensus 135 -fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~ 211 (297)
T PF13170_consen 135 -FLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN 211 (297)
T ss_pred -cccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc
Confidence 0001222233333322 2222 356777888888878766443 33334433332222 44777888888888
Q ss_pred CCCCcHHHHHHHHHHH
Q 005136 346 GIEKDVFISNALIDLY 361 (712)
Q Consensus 346 ~~~~~~~~~~~l~~~~ 361 (712)
|+++....|..+.-..
T Consensus 212 ~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 212 GVKIKYMHYPTLGLLA 227 (297)
T ss_pred CCccccccccHHHHHH
Confidence 8887777766554433
No 324
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=88.34 E-value=16 Score=33.85 Aligned_cols=53 Identities=11% Similarity=0.115 Sum_probs=36.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH-------HHHHHHHhcccCcHHHHHHHH
Q 005136 523 MVRGLAESGYAKESINLFEEMEKTSITPNELT-------ILSVLFACSHSGLVDKGLKYF 575 (712)
Q Consensus 523 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~-------~~~l~~~~~~~g~~~~a~~~~ 575 (712)
+.+-..+.+++++|+..+.++...|...+..+ ...+...|...|++..-.+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 44556677888999999999888887666543 445666677777665544443
No 325
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.14 E-value=6.1 Score=37.07 Aligned_cols=53 Identities=13% Similarity=0.246 Sum_probs=47.2
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcC
Q 005136 294 SGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIG 346 (712)
Q Consensus 294 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 346 (712)
.-++++++.++..=++.|+-||.++++.+|..+.+.+++..|..+.-.|....
T Consensus 113 ky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 113 KYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred ccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 34678999999998999999999999999999999999999999988887654
No 326
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.12 E-value=4.6 Score=35.31 Aligned_cols=95 Identities=13% Similarity=0.083 Sum_probs=49.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHH--HH-
Q 005136 520 WTVMVRGLAESGYAKESINLFEEMEKTSITPNE--LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYT--CV- 594 (712)
Q Consensus 520 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~--~l- 594 (712)
+..+...|++.|+.+.|++.|.++.+....|.. ..+..++......+++..+...+.++........+...-+ ..
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~ 118 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY 118 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 445566666666666777766666664433333 2345555566666666666666655542111111111111 11
Q ss_pred -HHHhhhcCChHHHHHHHHhC
Q 005136 595 -VDMLSRSGRLSEAEDFINSM 614 (712)
Q Consensus 595 -~~~~~~~g~~~~A~~~~~~~ 614 (712)
+-.+...+++.+|.+.|-..
T Consensus 119 ~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 119 EGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHhchHHHHHHHHHcc
Confidence 22234566777777666655
No 327
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.05 E-value=42 Score=36.17 Aligned_cols=140 Identities=5% Similarity=0.027 Sum_probs=87.1
Q ss_pred ChhHHHHHhhcCcCCCCCC---chhhHHHHHHHhhccchhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHH
Q 005136 1 MKASLRSLFSINPETSFNS---YIETCLCLLKDITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANE 77 (712)
Q Consensus 1 ~~~a~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 77 (712)
|+|||++-+.. .|.+| -.......|..+...|++.+|-.+.-.|.. -+...|...+.-+...+.......
T Consensus 372 yeeAl~~~k~~---~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~l~~Ia~ 444 (846)
T KOG2066|consen 372 YEEALDAAKAS---IGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQLTDIAP 444 (846)
T ss_pred HHHHHHHHHhc---cCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccccccchhhc
Confidence 57788877764 55555 345677788888889999999888877773 356677777777777776544433
Q ss_pred HHhhcCC-CCcchHHHHHHHHHhcCChHHHHHHHhhCCC--------------------CChhHHHHHHHHHHccCChHH
Q 005136 78 IVKDLNG-FDLVVHNCMINANIQWGNLEEAQRLFDGMPE--------------------RNEVSWTALISGFMKHGRVEE 136 (712)
Q Consensus 78 ~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------------~~~~~~~~l~~~~~~~g~~~~ 136 (712)
++-.-++ .+..+|..++..+.. .+...-..+..+-+. .+......|+..|...+++++
T Consensus 445 ~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~ 523 (846)
T KOG2066|consen 445 YLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYEK 523 (846)
T ss_pred cCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChHH
Confidence 3322222 355688888877776 333333333322221 122233457777778888888
Q ss_pred HHHHhhhCCCCC
Q 005136 137 SMWYFERNPFQN 148 (712)
Q Consensus 137 a~~~~~~~~~~~ 148 (712)
|.+++-...+++
T Consensus 524 Al~~ylklk~~~ 535 (846)
T KOG2066|consen 524 ALPIYLKLQDKD 535 (846)
T ss_pred HHHHHHhccChH
Confidence 887776665443
No 328
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=87.95 E-value=1.2 Score=33.58 Aligned_cols=41 Identities=10% Similarity=0.158 Sum_probs=21.7
Q ss_pred HHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 643 VKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 643 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
+++.++.+|++....+.|+..+...|++++|++.+-.+.+.
T Consensus 11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 11 LEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 44445555555555555555555555555555555555543
No 329
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=87.80 E-value=1.8 Score=28.63 Aligned_cols=31 Identities=16% Similarity=0.155 Sum_probs=24.4
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhccCCCCCc
Q 005136 625 SLLSGCKTYKNEQIAERAVKNLWKLAEEHPA 655 (712)
Q Consensus 625 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 655 (712)
.+.-++.+.|+++.|.+..+.+++.+|+|..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 4455688999999999999999999999754
No 330
>PRK10941 hypothetical protein; Provisional
Probab=87.74 E-value=2.8 Score=39.39 Aligned_cols=62 Identities=21% Similarity=0.120 Sum_probs=49.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 623 WASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 623 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
...+-.+|.+.++++.|.+..++++.+.|++|.-...-|.+|.+.|.+..|..=++..++.-
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 34555567888888888888888888888888888888888888888888888777776653
No 331
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=87.67 E-value=6.4 Score=39.15 Aligned_cols=120 Identities=18% Similarity=0.181 Sum_probs=56.3
Q ss_pred HcCChHHHHH-HHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHH
Q 005136 529 ESGYAKESIN-LFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEA 607 (712)
Q Consensus 529 ~~~~~~~A~~-~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 607 (712)
..|+.-.|-+ ++..++...-.|+...+...+ +...|+++.+...+..... -+.....+..++++.....|+|++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 3455444433 333333332334333332222 3455666666666555441 1222344555556666666666666
Q ss_pred HHHHHhC-C-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC
Q 005136 608 EDFINSM-P-FEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEE 652 (712)
Q Consensus 608 ~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 652 (712)
...-.-| + .-.++.............|-++++...+++++.++|+
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 6665555 1 1122222222222234455566666666666665554
No 332
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=87.65 E-value=3.7 Score=33.17 Aligned_cols=70 Identities=16% Similarity=0.102 Sum_probs=50.0
Q ss_pred CCchHHHHHHHHHhhhcCCh---HHHHHHHHhC-C-CCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCC
Q 005136 585 KPNGRHYTCVVDMLSRSGRL---SEAEDFINSM-P-FEPD--SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHP 654 (712)
Q Consensus 585 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~-~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 654 (712)
.++..+--.++.++.+..+. .+.+.+++++ + ..|+ ......+.-++.+.++++.+.++++..++.+|+|+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 56666777788888876654 4556677766 2 3333 33344555568899999999999999999999865
No 333
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.60 E-value=4.2 Score=36.58 Aligned_cols=97 Identities=11% Similarity=0.005 Sum_probs=67.6
Q ss_pred hHHHHHHHHHhhhcCChHHHHHHHHhC---------CCCCCHHHH-----------HHHHHHHhhcCCHHHHHHHHHHHh
Q 005136 588 GRHYTCVVDMLSRSGRLSEAEDFINSM---------PFEPDSNAW-----------ASLLSGCKTYKNEQIAERAVKNLW 647 (712)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~~~~-----------~~l~~~~~~~g~~~~a~~~~~~~~ 647 (712)
+.+...-++-+.+.|++.+|...|.+. +.+|...-| .++..++...|++-++++....++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 334444556666777777766655543 334443333 334445567888888888888888
Q ss_pred ccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 648 KLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 648 ~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
..+|+|..+|+.-+++....=+..||..=+.++++-.
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 8899988888888888888888888888888777644
No 334
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=87.56 E-value=3 Score=37.76 Aligned_cols=65 Identities=9% Similarity=0.061 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHH-------HHhccC--CC----CCchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 620 SNAWASLLSGCKTYKNEQIAERAVK-------NLWKLA--EE----HPAGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 620 ~~~~~~l~~~~~~~g~~~~a~~~~~-------~~~~~~--p~----~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
...+..+.+.|...|+.+.-..+++ ++++.. |. ...+.+.+|.+..+.|++++|.+++.+++..+
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3445556666777777554444444 444332 22 23577889999999999999999999998754
No 335
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.20 E-value=1.1 Score=28.18 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=24.0
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 658 VLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 658 ~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
..|+.+|...|+.+.|+++++++++.|-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 4689999999999999999999987653
No 336
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=87.17 E-value=52 Score=36.22 Aligned_cols=153 Identities=14% Similarity=0.110 Sum_probs=67.6
Q ss_pred HHcCChHHHHHHHHHHHHc----CCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchh---cCCCC-chHHHHHHHHHhh
Q 005136 528 AESGYAKESINLFEEMEKT----SITPNELTILSVLFACSHSGLVDKGLKYFNSMEPI---YNIKP-NGRHYTCVVDMLS 599 (712)
Q Consensus 528 ~~~~~~~~A~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~~~~~l~~~~~ 599 (712)
...|+++.|.++.+..... -..+....+..+..+..-.|++++|..+.+...+. ++..+ ...+...-...+.
T Consensus 469 l~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~ 548 (894)
T COG2909 469 LNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILE 548 (894)
T ss_pred HhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 3456666666666655542 01122233445555555667777776665554421 11111 1112222233445
Q ss_pred hcCCh--HHHHHHHHhC-----CCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhcc----CCCCC---chHHHHH
Q 005136 600 RSGRL--SEAEDFINSM-----PFEPD----SNAWASLLSGCKTYKNEQIAERAVKNLWKL----AEEHP---AGYVLLS 661 (712)
Q Consensus 600 ~~g~~--~~A~~~~~~~-----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~p~~~---~~~~~l~ 661 (712)
..|+. .+....+... +.+|. ..+...+++++.+ .+.+..-....++. .|..- ..+..|+
T Consensus 549 ~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA 625 (894)
T COG2909 549 AQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLA 625 (894)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHH
Confidence 55522 2222222222 11222 2333334444333 33343333333332 22211 1223566
Q ss_pred HHHHhcCCchhHHHHHHHHHhC
Q 005136 662 NIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 662 ~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
.+....|+.++|...++++..-
T Consensus 626 ~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 626 ELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred HHHHhcCCHHHHHHHHHHHHHH
Confidence 6677777777777777766553
No 337
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.16 E-value=20 Score=31.67 Aligned_cols=79 Identities=14% Similarity=0.143 Sum_probs=52.3
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHc---CCCCcHHHHHHHHHHHHhcCCh
Q 005136 291 YNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKI---GIEKDVFISNALIDLYSKCGET 367 (712)
Q Consensus 291 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~ 367 (712)
+.+.|+ +.|.+.|-.+...+..-++.....+...|. ..+.+++..++...++. +-.+|+.++.+|+..|.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344444 677777777776665555555444444444 56778888887777664 2356778888888888888887
Q ss_pred HHHH
Q 005136 368 KDGR 371 (712)
Q Consensus 368 ~~A~ 371 (712)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 7764
No 338
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.15 E-value=6.1 Score=34.58 Aligned_cols=64 Identities=11% Similarity=0.030 Sum_probs=45.0
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--hhHHHHHHHHhcccchHHHHHHHHHHHHh
Q 005136 150 ISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNE--VTFSSICKACAEINDFRLGLSVFGLIFKA 213 (712)
Q Consensus 150 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 213 (712)
..+..+...|.+.|+.+.|++.|.++.+....|.. ..+..+|+.....+++..+...+......
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35667777788888888888888888776444333 34566777777778888877777666543
No 339
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.59 E-value=26 Score=32.22 Aligned_cols=121 Identities=21% Similarity=0.345 Sum_probs=63.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHh-----cccCcHHHHHH-HHHhcchhcC--CCCc--
Q 005136 519 SWTVMVRGLAESGYAKESINLFEEMEKTSI-TPNELTILSVLFAC-----SHSGLVDKGLK-YFNSMEPIYN--IKPN-- 587 (712)
Q Consensus 519 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~-----~~~g~~~~a~~-~~~~~~~~~~--~~p~-- 587 (712)
.|..-+..|...++-.....++++...-.- -|. .....+++-| .+.|.+++|.. +|+... .+. -.|.
T Consensus 193 iYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH-PlImGvIRECGGKMHlreg~fe~AhTDFFEAFK-NYDEsGspRRt 270 (440)
T KOG1464|consen 193 IYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH-PLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK-NYDESGSPRRT 270 (440)
T ss_pred hHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc-hHHHhHHHHcCCccccccchHHHHHhHHHHHHh-cccccCCcchh
Confidence 455667777777777777777777654222 233 3334445544 35688888765 444443 221 1232
Q ss_pred -hHHHHHHHHHhhhcCC--h--HHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 005136 588 -GRHYTCVVDMLSRSGR--L--SEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNL 646 (712)
Q Consensus 588 -~~~~~~l~~~~~~~g~--~--~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 646 (712)
.--|..|++.+.+.|- + ++|. -.+..|.......++.+| +.++..+.+++++.-
T Consensus 271 tCLKYLVLANMLmkS~iNPFDsQEAK----PyKNdPEIlAMTnlv~aY-Q~NdI~eFE~Il~~~ 329 (440)
T KOG1464|consen 271 TCLKYLVLANMLMKSGINPFDSQEAK----PYKNDPEILAMTNLVAAY-QNNDIIEFERILKSN 329 (440)
T ss_pred HHHHHHHHHHHHHHcCCCCCcccccC----CCCCCHHHHHHHHHHHHH-hcccHHHHHHHHHhh
Confidence 2235556666766652 1 1110 012234445556677766 456666666655543
No 340
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=86.48 E-value=1.2 Score=38.11 Aligned_cols=107 Identities=14% Similarity=0.115 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhc---CChHHHHHHHHhC--------CCCCC-HHHHHHHHHHHhhcC
Q 005136 568 VDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRS---GRLSEAEDFINSM--------PFEPD-SNAWASLLSGCKTYK 634 (712)
Q Consensus 568 ~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~--------~~~p~-~~~~~~l~~~~~~~g 634 (712)
++.|.+.++... ...| |...++.-+.++... ....++.+++++. .+.|+ ...+..+..++...+
T Consensus 7 FE~ark~aea~y---~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAY---AKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHH---HH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 445555555433 2255 667666666665543 3333444444433 35666 566666766665433
Q ss_pred -----------CHHHHHHHHHHHhccCCCCCchHHHHHHHHH-hcCCchhHHHHHHHHHhCCC
Q 005136 635 -----------NEQIAERAVKNLWKLAEEHPAGYVLLSNIYA-SAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 635 -----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~eA~~~~~~~~~~~~ 685 (712)
.+++|...|+++.+.+|+|. +|. ...-..+|-++..++.+.+.
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne--------~Y~ksLe~~~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVDEDPNNE--------LYRKSLEMAAKAPELHMEIHKQGL 138 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHH-TT-H--------HHHHHHHHHHTHHHHHHHHHHSSS
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHhhHHHHHHHHHHHh
Confidence 25667777777777888863 333 22344566666666655543
No 341
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=86.05 E-value=1.1 Score=25.14 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=20.3
Q ss_pred chHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 655 AGYVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 655 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
.++..++.++...|++++|...+++.++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35667777777777777777777766653
No 342
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.90 E-value=58 Score=35.52 Aligned_cols=180 Identities=12% Similarity=0.126 Sum_probs=88.9
Q ss_pred HHHHHHHHHH-hCCCCCC--HHHHHHHHHHHh-ccCChhhHHHHHHHHHHcCCCCcH-----HHHHHHHHHHHhcCChHH
Q 005136 299 EAFRLFRQMT-RYSFKPN--TSCFSIVLSALA-SLKALRSGMHVHAHVLKIGIEKDV-----FISNALIDLYSKCGETKD 369 (712)
Q Consensus 299 ~a~~~~~~m~-~~~~~p~--~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~ 369 (712)
.|++.++... ...++|. ..++..+...+. ...+++.|+..+++.....-.++. .....++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 3455555554 3233332 223344444443 456777777777765544322221 12234456666666555
Q ss_pred HHHHHHhhhcCCC-----CceeeHHHH-HHHHhccCChhhHHHHhhcCCC-----CC--cccHHHHHHHH--HhcCChhH
Q 005136 370 GRLVFDSIVEKDV-----AHVVSWNSM-IGGYGLNGQMEEAKELFDNMPK-----RN--DVSWSAIISGY--LEHKQFDL 434 (712)
Q Consensus 370 A~~~~~~~~~~~~-----~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~-----~~--~~~~~~l~~~~--~~~~~~~~ 434 (712)
|...+++..+.-. +....+..+ +..+...++...|.+.++.+.. .+ ..++..++.+. ...+..++
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 6666666443221 111222222 1222223677777777766542 12 22333333333 34455666
Q ss_pred HHHHHHHHHHCC---------CCCCHHHHHHHHHHHh--ccCchHHHHHHHHHHHH
Q 005136 435 VFAVFNEMLLSG---------EIPNKSTFSSVLCASA--SVASLEKGKDLHGKIIK 479 (712)
Q Consensus 435 a~~~~~~~~~~g---------~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~ 479 (712)
+.+.++++.... ..|...++..+++.++ ..|+++.+...++.+.+
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 677776663322 1345566666666544 56777677766666553
No 343
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.76 E-value=5.3 Score=33.06 Aligned_cols=75 Identities=13% Similarity=0.103 Sum_probs=50.3
Q ss_pred HHHHHHHHH---hcccCcHHHHHHHHHhcchhcCCCCc-hHHHHHHHHHhhhcCChHHHHHHHHhCCCCC-CHHHHHHHH
Q 005136 553 LTILSVLFA---CSHSGLVDKGLKYFNSMEPIYNIKPN-GRHYTCVVDMLSRSGRLSEAEDFINSMPFEP-DSNAWASLL 627 (712)
Q Consensus 553 ~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~ 627 (712)
...+.|+.. -...++.+++..+++.+. -+.|+ ...-..-+..+...|+|.+|..+|++....+ ....-..+.
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~ 84 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALL 84 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHH
Confidence 344444443 345889999999999887 56774 4444455777899999999999999995444 333333344
Q ss_pred HHH
Q 005136 628 SGC 630 (712)
Q Consensus 628 ~~~ 630 (712)
..|
T Consensus 85 A~C 87 (153)
T TIGR02561 85 ALC 87 (153)
T ss_pred HHH
Confidence 334
No 344
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.08 E-value=1.9 Score=26.53 Aligned_cols=28 Identities=11% Similarity=0.074 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 005136 621 NAWASLLSGCKTYKNEQIAERAVKNLWK 648 (712)
Q Consensus 621 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 648 (712)
.++..+...|...|++++|+.+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455666666666777777776666654
No 345
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=84.45 E-value=29 Score=30.91 Aligned_cols=79 Identities=18% Similarity=0.042 Sum_probs=47.7
Q ss_pred HHhcCCChhHhHHHHhhc--CCCC-cchHHHHHHHHHhcCChHHHHHHHhhCCCCChh-HHHH--HHHHHHccCChHHHH
Q 005136 65 MYLGSRKSLEANEIVKDL--NGFD-LVVHNCMINANIQWGNLEEAQRLFDGMPERNEV-SWTA--LISGFMKHGRVEESM 138 (712)
Q Consensus 65 ~~~~~~~~~~a~~~~~~~--~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~--l~~~~~~~g~~~~a~ 138 (712)
.|...|-+.-|+--|.+. .+|+ +.+||-++.-+...|+++.|.+.|+...+-|+. -|.. -.-.+---|+++-|.
T Consensus 74 lYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq 153 (297)
T COG4785 74 LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQ 153 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhH
Confidence 455555555555555554 2343 468888888888888888888888888775443 1221 122233456777766
Q ss_pred HHhhh
Q 005136 139 WYFER 143 (712)
Q Consensus 139 ~~~~~ 143 (712)
+-|..
T Consensus 154 ~d~~~ 158 (297)
T COG4785 154 DDLLA 158 (297)
T ss_pred HHHHH
Confidence 55443
No 346
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=84.31 E-value=51 Score=33.59 Aligned_cols=393 Identities=10% Similarity=0.044 Sum_probs=189.3
Q ss_pred CCceeHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHH
Q 005136 279 RNEVSWSVMIARYNQSGYPEEAFRLFRQMTR-YSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNAL 357 (712)
Q Consensus 279 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 357 (712)
.|+..|...+..+.+.+.+.+.-.+|.+|.. ++-.|+...+...- -+....+++.|..++..-++.+. .++..|...
T Consensus 103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~w-efe~n~ni~saRalflrgLR~np-dsp~Lw~ey 180 (568)
T KOG2396|consen 103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKW-EFEINLNIESARALFLRGLRFNP-DSPKLWKEY 180 (568)
T ss_pred CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhh-HHhhccchHHHHHHHHHHhhcCC-CChHHHHHH
Confidence 3888899988888888889999999999976 34455555444332 22333448889998888777642 234444443
Q ss_pred HHHHHh----c--------CChHHH-HHHHHh--hhcCCCCceee-------HH-HHHHHHhccCChhhHHHHhhcCC--
Q 005136 358 IDLYSK----C--------GETKDG-RLVFDS--IVEKDVAHVVS-------WN-SMIGGYGLNGQMEEAKELFDNMP-- 412 (712)
Q Consensus 358 ~~~~~~----~--------g~~~~A-~~~~~~--~~~~~~~~~~~-------~~-~l~~~~~~~~~~~~a~~~~~~~~-- 412 (712)
.++-.. . ++.+.- .++-.. .-....++... .+ ......-..++..+ .+.+.+.
T Consensus 181 frmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k--~i~d~~~~~ 258 (568)
T KOG2396|consen 181 FRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQK--NIIDDLQSK 258 (568)
T ss_pred HHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHH--HHHHHHhcc
Confidence 332111 0 000000 000000 00000000000 00 00000000011111 1111111
Q ss_pred -CCCcccHHHHHHHH----Hh---------------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC------c
Q 005136 413 -KRNDVSWSAIISGY----LE---------------HKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVA------S 466 (712)
Q Consensus 413 -~~~~~~~~~l~~~~----~~---------------~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~------~ 466 (712)
..++.+|..+..-. .+ ....+....+|++..+. .|+...+...|..|...- .
T Consensus 259 ~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~ 336 (568)
T KOG2396|consen 259 APDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKR 336 (568)
T ss_pred CCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhH
Confidence 12344443332211 11 11223445666666553 456666666666654332 2
Q ss_pred hHHHHHHHHHHHHc-CCCC-chhhHHHHHHHHHhcCChHH-HHHHhccCCCCCcchHHHHHHHHHHcC-ChHHH-HHHHH
Q 005136 467 LEKGKDLHGKIIKL-GFPY-DVFLGTALTDTYAKSGDIES-SRRVFDRMPDKNEISWTVMVRGLAESG-YAKES-INLFE 541 (712)
Q Consensus 467 ~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A-~~~~~ 541 (712)
......+++...+. +..+ ....|..+.-++.......+ |..+..+....+...|-.-+....... +++-- .+.+.
T Consensus 337 I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n 416 (568)
T KOG2396|consen 337 ILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFN 416 (568)
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 33334444444432 2222 34445555555555444333 333333444555555555444444221 22111 11122
Q ss_pred HHHHcCCCCCHHHHHHHH-HHhcccCcHHHHHHHHHhcchhcCCCCchHH-HHHHHHHhhhcCChHHHHHHHHhCCC--C
Q 005136 542 EMEKTSITPNELTILSVL-FACSHSGLVDKGLKYFNSMEPIYNIKPNGRH-YTCVVDMLSRSGRLSEAEDFINSMPF--E 617 (712)
Q Consensus 542 ~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~--~ 617 (712)
.....-..+-...|+... ..+....-.+..+..+..+. .|+..+ -+.+.+.+.+.|-..+|...+.++.. .
T Consensus 417 ~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~-----~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp 491 (568)
T KOG2396|consen 417 HLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSVI-----GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPP 491 (568)
T ss_pred HHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhc-----CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCC
Confidence 222221222223333333 01111111222233333333 454433 34677778888999999999998832 3
Q ss_pred CCHHHHHHHHHH--HhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 618 PDSNAWASLLSG--CKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 618 p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
|+...+..++.. -...-+...+...|+.++.....++..+..+...-...|..+-+-.++.+..+
T Consensus 492 ~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 492 FSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred ccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 455666666554 22333477888888888877767788888888777788888888887776654
No 347
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.96 E-value=7.7 Score=29.25 Aligned_cols=60 Identities=12% Similarity=0.112 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHH
Q 005136 298 EEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALI 358 (712)
Q Consensus 298 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 358 (712)
-++.+-++.+....+.|++......+++|.+.+++..|.++++-++... ..+...|..++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 3455666666677788888888888888888888888888888776432 11333454443
No 348
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=83.67 E-value=2.5 Score=23.63 Aligned_cols=31 Identities=13% Similarity=-0.023 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCCC
Q 005136 622 AWASLLSGCKTYKNEQIAERAVKNLWKLAEE 652 (712)
Q Consensus 622 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 652 (712)
.+..+...+...|+++.|...++++++..|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3455666677788888888888888877765
No 349
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.56 E-value=61 Score=33.15 Aligned_cols=37 Identities=14% Similarity=-0.005 Sum_probs=19.0
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 005136 628 SGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIY 664 (712)
Q Consensus 628 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 664 (712)
.-|....++.+|++++..+++.+..+..+--.++.-+
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 3355555566666666655555554444444444433
No 350
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=82.38 E-value=4.2 Score=41.58 Aligned_cols=100 Identities=17% Similarity=0.134 Sum_probs=64.8
Q ss_pred cccCcHHHHHHHHHhcchhcCCCC--chHHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHhhcCCHHH
Q 005136 563 SHSGLVDKGLKYFNSMEPIYNIKP--NGRHYTCVVDMLSRSGRLSEAEDFINSM-P-FEPDSNAWASLLSGCKTYKNEQI 638 (712)
Q Consensus 563 ~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~ 638 (712)
...|+...|...+.... ...| .......|++.+.+.|...+|-.++... . ....+.++..+.+++....+.+.
T Consensus 618 r~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 34677777777777665 2344 2334456667777777767777666543 2 12334555666666777778888
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHH
Q 005136 639 AERAVKNLWKLAEEHPAGYVLLSNIYA 665 (712)
Q Consensus 639 a~~~~~~~~~~~p~~~~~~~~l~~~~~ 665 (712)
|++.++.++++.|+++.+-..|..+-+
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 888888888888887777776665544
No 351
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.23 E-value=15 Score=27.78 Aligned_cols=63 Identities=8% Similarity=0.017 Sum_probs=48.9
Q ss_pred ChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHH
Q 005136 331 ALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIG 393 (712)
Q Consensus 331 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 393 (712)
+.-++.+-++.+....+.|++.+..+.+++|-+.+++..|.++|+.++.+.......|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence 445566677777777889999999999999999999999999999887555333445655554
No 352
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=82.17 E-value=2.4 Score=30.51 Aligned_cols=49 Identities=8% Similarity=0.057 Sum_probs=38.2
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCCchHH---HHHHHHHhcCCchhHHHHHH
Q 005136 630 CKTYKNEQIAERAVKNLWKLAEEHPAGYV---LLSNIYASAGRWIDAMNVRK 678 (712)
Q Consensus 630 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~eA~~~~~ 678 (712)
+..+++.++|...++++++..++.+.-+. .|+.+|...|++++++.+--
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788899999999999998877665444 55566888999999988743
No 353
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.15 E-value=42 Score=30.97 Aligned_cols=179 Identities=10% Similarity=0.064 Sum_probs=101.9
Q ss_pred ChhHHHHHHHHHHHCCCC---CCHHHHHHHHHHHhccCchHHHHHHHHHHHH---cC--CCCchhhHHHHHHHHHhcCCh
Q 005136 431 QFDLVFAVFNEMLLSGEI---PNKSTFSSVLCASASVASLEKGKDLHGKIIK---LG--FPYDVFLGTALTDTYAKSGDI 502 (712)
Q Consensus 431 ~~~~a~~~~~~~~~~g~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~--~~~~~~~~~~l~~~~~~~g~~ 502 (712)
.+++|+.-|++.++.... ........++....+.+++++....+.++.. +. -..+....+.+++......+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 455556666665543211 1223444556666677777766666665542 11 123444555666655555554
Q ss_pred HHHHHHhccCC-----CCCc----chHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC----C-------HHHHHHHHHHh
Q 005136 503 ESSRRVFDRMP-----DKNE----ISWTVMVRGLAESGYAKESINLFEEMEKTSITP----N-------ELTILSVLFAC 562 (712)
Q Consensus 503 ~~A~~~~~~~~-----~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p----~-------~~~~~~l~~~~ 562 (712)
+--.++++.-. .++. .+-..|...|...+.+....++++++...-... | ...|..=+..|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 44444443321 1222 233557778888888888888888886532111 1 13466666777
Q ss_pred cccCcHHHHHHHHHhcchhcCCCCchHHHHHH----HHHhhhcCChHHHHH
Q 005136 563 SHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCV----VDMLSRSGRLSEAED 609 (712)
Q Consensus 563 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l----~~~~~~~g~~~~A~~ 609 (712)
....+-.+...+|++...-...-|.+.....+ +..+.+.|+|++|-.
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 77777777888888766433445655544433 345678899998864
No 354
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.11 E-value=6.6 Score=29.95 Aligned_cols=60 Identities=13% Similarity=0.185 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHH
Q 005136 535 ESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVD 596 (712)
Q Consensus 535 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 596 (712)
+..+-+..+....+.|+.......+.+|.+.+|+..|+++|+.++.+.+-. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 555666666666788999999999999999999999999999888654433 225555543
No 355
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=81.88 E-value=6.3 Score=31.89 Aligned_cols=68 Identities=10% Similarity=0.006 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHHHHhhcC---CHHHHHHHHHHHhc-cCCC-CCchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 617 EPDSNAWASLLSGCKTYK---NEQIAERAVKNLWK-LAEE-HPAGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 617 ~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
.++..+-..+.+++.+.. +..+.+.+++.+++ -.|+ ..+..+.|+-.+++.|+|++++.+.+.+++..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 566677777888876655 45677888888886 4455 45678889999999999999999999988754
No 356
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.55 E-value=5.5 Score=35.27 Aligned_cols=64 Identities=11% Similarity=0.019 Sum_probs=48.7
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCC
Q 005136 591 YTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHP 654 (712)
Q Consensus 591 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 654 (712)
.+.-+..+.+.++.++|+...+.- +.+|. ...-..++..++-.|++++|...++-+-++.|+..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 344456777888999998887654 55665 45556677778889999999999999988888853
No 357
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.28 E-value=42 Score=30.42 Aligned_cols=17 Identities=6% Similarity=0.223 Sum_probs=10.3
Q ss_pred cccCcHHHHHHHHHhcc
Q 005136 563 SHSGLVDKGLKYFNSME 579 (712)
Q Consensus 563 ~~~g~~~~a~~~~~~~~ 579 (712)
...+++.+|+.+|+++.
T Consensus 165 a~leqY~~Ai~iyeqva 181 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVA 181 (288)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566666666666655
No 358
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=80.85 E-value=11 Score=28.78 Aligned_cols=60 Identities=17% Similarity=0.286 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHH
Q 005136 167 EALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLIT 227 (712)
Q Consensus 167 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 227 (712)
+..+-++.+....+.|++....+.+++|.+.+++..|.++++-++..- .+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 566667777777888999999999999999999999999998876542 233336666654
No 359
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=80.57 E-value=65 Score=32.16 Aligned_cols=85 Identities=12% Similarity=0.010 Sum_probs=41.2
Q ss_pred HhhhcCChHHHHHHHHhC-CCCCC--HHHHHHHHHH-HhhcCCHHHHHHHHHHHhccCC-----CCCchHHHHHHHHHhc
Q 005136 597 MLSRSGRLSEAEDFINSM-PFEPD--SNAWASLLSG-CKTYKNEQIAERAVKNLWKLAE-----EHPAGYVLLSNIYASA 667 (712)
Q Consensus 597 ~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~ 667 (712)
.+.+.|-+..|.++.+-+ ...|+ +.....++.. ..+.++++-.+++++....... .-|...+..+-++...
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l 191 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRL 191 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHh
Confidence 344555555555555443 22222 2222222333 2344555555555544333100 1245666666666667
Q ss_pred CCc---------------hhHHHHHHHHH
Q 005136 668 GRW---------------IDAMNVRKLMT 681 (712)
Q Consensus 668 g~~---------------~eA~~~~~~~~ 681 (712)
++. ++|.+.+.+.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai 220 (360)
T PF04910_consen 192 EKEESSQSSAQSGRSENSESADEALQKAI 220 (360)
T ss_pred cCccccccccccccccchhHHHHHHHHHH
Confidence 666 67777766644
No 360
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=80.54 E-value=93 Score=33.94 Aligned_cols=84 Identities=11% Similarity=0.102 Sum_probs=44.5
Q ss_pred CChhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHh--ccCChhhHHHHHHHHHHcCC---------CCcHHHHHHHHHH
Q 005136 295 GYPEEAFRLFRQMTRYS---FKPNTSCFSIVLSALA--SLKALRSGMHVHAHVLKIGI---------EKDVFISNALIDL 360 (712)
Q Consensus 295 ~~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~ 360 (712)
+++..|++.++.+...- ..|-...+..++.+.. +.+..+.+.+.++.+..... .|...++..+++.
T Consensus 153 ~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l 232 (608)
T PF10345_consen 153 KDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDL 232 (608)
T ss_pred ccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHH
Confidence 67777777777765422 2344444445555444 33445556666555533211 2344555555554
Q ss_pred H--HhcCChHHHHHHHHhhh
Q 005136 361 Y--SKCGETKDGRLVFDSIV 378 (712)
Q Consensus 361 ~--~~~g~~~~A~~~~~~~~ 378 (712)
+ ...|+++.+...++++.
T Consensus 233 ~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 233 CCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 3 45566666666655543
No 361
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=80.44 E-value=4.1 Score=34.94 Aligned_cols=91 Identities=12% Similarity=0.123 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHH---hcccCcHHHHHHHHHhcchhc----CCCCc-hHHHHHHHHHhhhcC--
Q 005136 533 AKESINLFEEMEKTSITPNELTILSVLFA---CSHSGLVDKGLKYFNSMEPIY----NIKPN-GRHYTCVVDMLSRSG-- 602 (712)
Q Consensus 533 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g-- 602 (712)
++.|.+.++.-...+ +.|...++.-..+ +.+..+..++.+++++...++ .+.|+ ..++.+++.+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 566777777655531 3344444444444 445566677888888776443 46784 678888998887654
Q ss_pred --ChHHHHHHHHh-------C-CCCCCHHHHH
Q 005136 603 --RLSEAEDFINS-------M-PFEPDSNAWA 624 (712)
Q Consensus 603 --~~~~A~~~~~~-------~-~~~p~~~~~~ 624 (712)
+..+|..+|++ . ..+|+...|+
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ 117 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELYR 117 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 33344444444 3 3467766654
No 362
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=80.39 E-value=57 Score=32.56 Aligned_cols=96 Identities=15% Similarity=0.215 Sum_probs=65.9
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhC----------CC-----------------CC-CHHHH---HHHHHHHhhcCC
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSM----------PF-----------------EP-DSNAW---ASLLSGCKTYKN 635 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------~~-----------------~p-~~~~~---~~l~~~~~~~g~ 635 (712)
.+.++..+...+.+.|+.+.|.+++++. .. .+ +...| ...+..+.+.|-
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 5666666666666666666666655543 01 11 22222 334455678999
Q ss_pred HHHHHHHHHHHhccCCC-CCchHHHHHHHHH-hcCCchhHHHHHHHHHh
Q 005136 636 EQIAERAVKNLWKLAEE-HPAGYVLLSNIYA-SAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 636 ~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~eA~~~~~~~~~ 682 (712)
+..|.++.+-++.++|. ||-.....+..|+ +.++++--+++.+....
T Consensus 119 ~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 99999999999999999 8877666666665 77888878888776655
No 363
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.39 E-value=3.5 Score=22.32 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=11.6
Q ss_pred HHHHHHhhhcCChHHHHHHHH
Q 005136 592 TCVVDMLSRSGRLSEAEDFIN 612 (712)
Q Consensus 592 ~~l~~~~~~~g~~~~A~~~~~ 612 (712)
..++..+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345555555666666555543
No 364
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.02 E-value=51 Score=36.78 Aligned_cols=124 Identities=17% Similarity=0.192 Sum_probs=61.1
Q ss_pred hHHHHHHhhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcC---CCCCHhhHHHHHHHHhcccch--HHHHHHHH
Q 005136 134 VEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESG---VKPNEVTFSSICKACAEINDF--RLGLSVFG 208 (712)
Q Consensus 134 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~l~~~~~~~~~~--~~a~~~~~ 208 (712)
+++...++.+.. -|..|+..|...|+.++|+++|.+..... ..--...+-.++.-+...+.. +.+.+.-.
T Consensus 494 vee~e~~L~k~~-----~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~ 568 (877)
T KOG2063|consen 494 VEEIETVLKKSK-----KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYAD 568 (877)
T ss_pred hHHHHHHHHhcc-----cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhh
Confidence 455555554422 36666777777777777777776665421 000111222344444444433 55555555
Q ss_pred HHHHhCCCCCccHHH------------HHHHHHHccCChHHHHHHHhhcCC----CCcchHHHHHHHHHh
Q 005136 209 LIFKAGFEKHVSVCN------------SLITLSLKMGEVDLARSVFDRMEK----RDVVSWTVILDVFIE 262 (712)
Q Consensus 209 ~~~~~~~~~~~~~~~------------~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~ 262 (712)
+..+........++. ..+-.|+.....+.+..+++.+.. ++....+.++..|++
T Consensus 569 wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 569 WVLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 554433211111111 123345566677777777777654 344455555555553
No 365
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.75 E-value=99 Score=33.19 Aligned_cols=66 Identities=12% Similarity=0.162 Sum_probs=36.9
Q ss_pred CcccHHHHHHHHHhcC-----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCchHHHHHHHHHHHHcC
Q 005136 415 NDVSWSAIISGYLEHK-----QFDLVFAVFNEMLLSGEIPNKSTFSSVLCASAS-VASLEKGKDLHGKIIKLG 481 (712)
Q Consensus 415 ~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~ 481 (712)
.+.....+..+|.+.. +.+.|..++......| .|+...+...+.-... ..+...|.+++...-+.|
T Consensus 287 ~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 287 LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC
Confidence 3445566666666543 4566777777777766 3444444333332222 234566666666666655
No 366
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=78.47 E-value=45 Score=29.10 Aligned_cols=177 Identities=12% Similarity=0.146 Sum_probs=81.7
Q ss_pred CCCCCHHHHHHHHHHHhcc----CChhhHHHHHHHHHHcCCCCc----HHHHHHHHHHHHhcCChHHHHHHHHhhhcCCC
Q 005136 311 SFKPNTSCFSIVLSALASL----KALRSGMHVHAHVLKIGIEKD----VFISNALIDLYSKCGETKDGRLVFDSIVEKDV 382 (712)
Q Consensus 311 ~~~p~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 382 (712)
|..++...++.++..+.+. +..+.+..+-......++..+ ......-+..|.+.||+.+--.+|-.+...
T Consensus 3 Gm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~g-- 80 (233)
T PF14669_consen 3 GMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMG-- 80 (233)
T ss_pred cccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhh--
Confidence 5556666666666555433 233333444333333333332 222223344555556665544444333221
Q ss_pred CceeeHHHHHHHHhccCChh-----hHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 005136 383 AHVVSWNSMIGGYGLNGQME-----EAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSV 457 (712)
Q Consensus 383 ~~~~~~~~l~~~~~~~~~~~-----~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l 457 (712)
+-+.++++ -|+.+.++..++..+.|..+..+-++.-+.+++.+.|-- .+=.++
T Consensus 81 ------------ce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LG----------RiGiS~ 138 (233)
T PF14669_consen 81 ------------CEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLG----------RIGISL 138 (233)
T ss_pred ------------cCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhh----------HHHHHH
Confidence 11111111 133334444444444555555555555444443333211 111234
Q ss_pred HHHHhccCchHHHHHHHHHHHHcCCC--------------CchhhHHHHHHHHHhcCChHHHHHHhcc
Q 005136 458 LCASASVASLEKGKDLHGKIIKLGFP--------------YDVFLGTALTDTYAKSGDIESSRRVFDR 511 (712)
Q Consensus 458 l~~~~~~~~~~~a~~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 511 (712)
+-.|.+..++.++.++++.+.+..+. +.-.+.+.-.+.+.+.|.++.|..++++
T Consensus 139 m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 139 MYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 55566666777777777776554221 2223444455555566666666555553
No 367
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.04 E-value=28 Score=26.55 Aligned_cols=53 Identities=11% Similarity=0.171 Sum_probs=30.0
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005136 257 LDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYS 311 (712)
Q Consensus 257 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 311 (712)
+..+.+.|++++|..+.+.+.-||...|-.|.. .+.|..++...-+..|..+|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 344556666666666666666666666655443 34555555555555555544
No 368
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=76.76 E-value=68 Score=30.27 Aligned_cols=137 Identities=17% Similarity=0.118 Sum_probs=57.4
Q ss_pred hhccchhhhhhhHHHHH----HHhCCCCcchhhhHHHHHHhcCCChhHhH-HHHhhc---------CCCCcchHHHHHHH
Q 005136 31 ITSQNLVIQGRALHGHL----IKTGIHKERYLTTRLLIMYLGSRKSLEAN-EIVKDL---------NGFDLVVHNCMINA 96 (712)
Q Consensus 31 ~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~---------~~~~~~~~~~l~~~ 96 (712)
+.+.|....|.++...+ .+.+.+.+......++..+...+.-+..+ ++.+.+ +.-++.....+...
T Consensus 20 ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~ 99 (260)
T PF04190_consen 20 LLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEK 99 (260)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHH
Confidence 34445544444443333 34466666666666666655443322111 111111 11344556666666
Q ss_pred HHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 005136 97 NIQWGNLEEAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLL 176 (712)
Q Consensus 97 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 176 (712)
+.+.|++.+|...|-.-..++...+..++......|...++--.+ ...+--|.-.++...|..+++...
T Consensus 100 ~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi-----------~RaVL~yL~l~n~~~A~~~~~~f~ 168 (260)
T PF04190_consen 100 LWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFI-----------ARAVLQYLCLGNLRDANELFDTFT 168 (260)
T ss_dssp HHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHH-----------HHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHH-----------HHHHHHHHHhcCHHHHHHHHHHHH
Confidence 666666666666654433333333322333333334333331111 112223445566666666665555
Q ss_pred Hc
Q 005136 177 ES 178 (712)
Q Consensus 177 ~~ 178 (712)
+.
T Consensus 169 ~~ 170 (260)
T PF04190_consen 169 SK 170 (260)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 369
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=76.49 E-value=4.5 Score=36.03 Aligned_cols=55 Identities=20% Similarity=0.190 Sum_probs=34.2
Q ss_pred hcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 005136 632 TYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 632 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 686 (712)
..+|.+.+.+++.+++++-|+....+..++..-.+.|+.+.|...|++.++.+++
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 4556666666666666666666666666666666666666666666666654443
No 370
>PRK12798 chemotaxis protein; Reviewed
Probab=76.29 E-value=88 Score=31.33 Aligned_cols=179 Identities=15% Similarity=0.200 Sum_probs=99.9
Q ss_pred cCChHHHHHHhccCCCC----CcchHHHHHHH-HHHcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHhcccCcHH
Q 005136 499 SGDIESSRRVFDRMPDK----NEISWTVMVRG-LAESGYAKESINLFEEMEKTSITPNE----LTILSVLFACSHSGLVD 569 (712)
Q Consensus 499 ~g~~~~A~~~~~~~~~~----~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~ 569 (712)
.|+.+++.+.+..+... ....+-.|+.+ .....++..|++.|+..+= ..|-. ..+..-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 57778888887777632 33345555554 3455678888888887765 34433 22333344556777877
Q ss_pred HHHHHHHhcchhcCCCCc-hHHHHHHHHHhhhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 005136 570 KGLKYFNSMEPIYNIKPN-GRHYTCVVDMLSRSG---RLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKN 645 (712)
Q Consensus 570 ~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 645 (712)
++..+-..-.+.+...|- ...+..+...+.+.+ +.+.-..++..|.-.-....|..+...-...|+.+.|.-..++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 766555554444444552 233333444444433 2334444455553222355677777777788888888888888
Q ss_pred HhccCCCCCchHHHHHHHHH-----hcCCchhHHHHHHHH
Q 005136 646 LWKLAEEHPAGYVLLSNIYA-----SAGRWIDAMNVRKLM 680 (712)
Q Consensus 646 ~~~~~p~~~~~~~~l~~~~~-----~~g~~~eA~~~~~~~ 680 (712)
+..+..+ ...-...+..|. -..+.++|++.+..+
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 8776533 222222333332 334466666555543
No 371
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=75.61 E-value=4.7 Score=26.69 Aligned_cols=32 Identities=13% Similarity=-0.056 Sum_probs=26.4
Q ss_pred chHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 005136 655 AGYVLLSNIYASAGRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 655 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 686 (712)
+.++.|+..+.+.|++++|+++.+.+++..+.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~ 33 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPD 33 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 35678999999999999999999999885543
No 372
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.26 E-value=1.2e+02 Score=32.49 Aligned_cols=53 Identities=13% Similarity=0.039 Sum_probs=27.3
Q ss_pred ccCChhhHHHHHHHHHH-------cCCCCcHHHHHHHHHHHHhcC-----ChHHHHHHHHhhhcCCCC
Q 005136 328 SLKALRSGMHVHAHVLK-------IGIEKDVFISNALIDLYSKCG-----ETKDGRLVFDSIVEKDVA 383 (712)
Q Consensus 328 ~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~ 383 (712)
...|.+.|...++.+.+ .+ .+.....+..+|.+.. +.+.|..++......+.|
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~ 325 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP 325 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc
Confidence 44556666666665544 33 2233444555555432 445566666666555544
No 373
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=74.93 E-value=10 Score=38.88 Aligned_cols=132 Identities=14% Similarity=0.124 Sum_probs=92.9
Q ss_pred CCCHHHHHHHHHHhcc--cCcHHHHHHHHHhcchhcCCCCchHHHH--HHHHHhh-hcCChHHHHHHHHhC-CCCCC--H
Q 005136 549 TPNELTILSVLFACSH--SGLVDKGLKYFNSMEPIYNIKPNGRHYT--CVVDMLS-RSGRLSEAEDFINSM-PFEPD--S 620 (712)
Q Consensus 549 ~p~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~--~l~~~~~-~~g~~~~A~~~~~~~-~~~p~--~ 620 (712)
-|+..+..+++.-... ....+-+-.++..|. +|+...|. .++..|. ..|+...|...+... ...|. .
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~-----~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~ 642 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAIN-----KPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQD 642 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhc-----CCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhc
Confidence 3555555444433322 123344555565555 44444332 2344444 579999999999887 34443 3
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 621 NAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 621 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
..+..+.......|-...|-.++.+.+.+....|-+++.+|+++....+.+.|++.++...+...
T Consensus 643 v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 643 VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT 707 (886)
T ss_pred ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC
Confidence 44567777788888889999999999998877899999999999999999999999999887654
No 374
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=74.79 E-value=8.4 Score=29.41 Aligned_cols=53 Identities=11% Similarity=0.123 Sum_probs=38.5
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCC---------CchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 630 CKTYKNEQIAERAVKNLWKLAEEH---------PAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 630 ~~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
..+.||+..|.+.+.+.++....+ ..+...++.+....|++++|++.+++.++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 346788888877777776643221 23556678888899999999999988775
No 375
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=74.65 E-value=5.4 Score=37.19 Aligned_cols=50 Identities=10% Similarity=0.038 Sum_probs=28.0
Q ss_pred hhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHH
Q 005136 631 KTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLM 680 (712)
Q Consensus 631 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 680 (712)
.+.|+.++|..+++.++++.|++|.++..+|......++.-+|.+++-+.
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A 176 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKA 176 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhee
Confidence 34555555555555555555555555555555555555555555555443
No 376
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=74.62 E-value=65 Score=28.96 Aligned_cols=122 Identities=16% Similarity=0.175 Sum_probs=70.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC----chHHHHHHH
Q 005136 521 TVMVRGLAESGYAKESINLFEEMEKTSITPN-ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP----NGRHYTCVV 595 (712)
Q Consensus 521 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~ 595 (712)
+..+..+.+.+...+++...++-++. +|. ...-..+++.++-.|++++|..-++-.. .+.| -...|..++
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a---~l~p~~t~~a~lyr~li 79 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA---TLSPQDTVGASLYRHLI 79 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHh---hcCcccchHHHHHHHHH
Confidence 34456677788888888888877764 454 4455567778888899998887776654 2344 344555555
Q ss_pred HHhhhcCChHHHH-HHHHhC--C-C--CCCHHHHHHHHHH--HhhcCCHHHHHHHHHHHhccCCCCC
Q 005136 596 DMLSRSGRLSEAE-DFINSM--P-F--EPDSNAWASLLSG--CKTYKNEQIAERAVKNLWKLAEEHP 654 (712)
Q Consensus 596 ~~~~~~g~~~~A~-~~~~~~--~-~--~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~ 654 (712)
++-. +. ++|..- + + .|.+.-...+..+ +...|.-+.+..+-+.+++.-|..+
T Consensus 80 r~ea-------~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~i 139 (273)
T COG4455 80 RCEA-------ARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPI 139 (273)
T ss_pred HHHH-------HHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCC
Confidence 4321 22 233322 1 1 2333333344444 3344455556666677777766643
No 377
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=74.09 E-value=6.2 Score=22.34 Aligned_cols=30 Identities=3% Similarity=-0.011 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 005136 634 KNEQIAERAVKNLWKLAEEHPAGYVLLSNI 663 (712)
Q Consensus 634 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 663 (712)
|+.+.+..++++++...|.++.++..++..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567888889999988888888877776654
No 378
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=73.87 E-value=2.5e+02 Score=35.35 Aligned_cols=149 Identities=9% Similarity=0.079 Sum_probs=95.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 005136 286 VMIARYNQSGYPEEAFRLFRQMTRYSF--KPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSK 363 (712)
Q Consensus 286 ~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 363 (712)
.+..+-.+.+.+.+|+..++.-..... ......|..+...|+..++++....+...-. .+...+. -+-....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~~-qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLYQ-QILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHHH-HHHHHHh
Confidence 455566777888888888887311111 1122334455558888888888877765411 1223333 3345667
Q ss_pred cCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCc---ccHHHH-HHHHHhcCChhHHHHHH
Q 005136 364 CGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRND---VSWSAI-ISGYLEHKQFDLVFAVF 439 (712)
Q Consensus 364 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l-~~~~~~~~~~~~a~~~~ 439 (712)
.|++..|...|+.+.+.+++....++.++......+.++..+-..+....... ..++++ ..+--+.++++......
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 89999999999999999988888898888888888888888777666654322 223222 23335566666655554
Q ss_pred H
Q 005136 440 N 440 (712)
Q Consensus 440 ~ 440 (712)
.
T Consensus 1542 ~ 1542 (2382)
T KOG0890|consen 1542 S 1542 (2382)
T ss_pred h
Confidence 4
No 379
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=72.47 E-value=21 Score=34.08 Aligned_cols=93 Identities=15% Similarity=0.110 Sum_probs=73.1
Q ss_pred hHHHHHHHHHhhhcCChHHHHHHHHhC-C---CCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 005136 588 GRHYTCVVDMLSRSGRLSEAEDFINSM-P---FEPD--SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLS 661 (712)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 661 (712)
...|.-=++-|.+..++..|...|.+. . -.|+ ...|.+-..+-...|++..++.-..+++..+|.+.-+|..=+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 445556677888999999999998876 1 2344 445666666666788999999999999999999999999999
Q ss_pred HHHHhcCCchhHHHHHHHH
Q 005136 662 NIYASAGRWIDAMNVRKLM 680 (712)
Q Consensus 662 ~~~~~~g~~~eA~~~~~~~ 680 (712)
.++....++.+|..+.+..
T Consensus 161 kc~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 9999999988777766544
No 380
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=72.32 E-value=40 Score=26.15 Aligned_cols=53 Identities=19% Similarity=0.344 Sum_probs=27.2
Q ss_pred HHHHHccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 005136 125 ISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESG 179 (712)
Q Consensus 125 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 179 (712)
+..+.++|+|++|...=.....||...|-.+-. .+.|--+++...+.++-.+|
T Consensus 47 ~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 47 LSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASSG 99 (116)
T ss_dssp HHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-S
T ss_pred HHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 444566777777733333444566666655433 45666666666666665443
No 381
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.15 E-value=2.5 Score=40.13 Aligned_cols=119 Identities=16% Similarity=0.157 Sum_probs=77.9
Q ss_pred hcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHhhcCCHHH
Q 005136 562 CSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPDS-NAWASLLSGCKTYKNEQI 638 (712)
Q Consensus 562 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~ 638 (712)
....|.++.|++.|...+ .+.| ....|..-..++.+.+++..|+.=+... .+.||. ..|-.-..+....|++++
T Consensus 124 Aln~G~~~~ai~~~t~ai---~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAI---ELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HhcCcchhhhhccccccc---ccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence 456677888888888777 3355 4556666677788888888888777665 455552 223323333456788888
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 639 AERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 639 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
|.+.++.+.+++-+ ..+-..|-.+.-+.+..++=...+++..+..
T Consensus 201 aa~dl~~a~kld~d-E~~~a~lKeV~p~a~ki~e~~~k~er~~~e~ 245 (377)
T KOG1308|consen 201 AAHDLALACKLDYD-EANSATLKEVFPNAGKIEEHRRKYERAREER 245 (377)
T ss_pred HHHHHHHHHhcccc-HHHHHHHHHhccchhhhhhchhHHHHHHHHh
Confidence 88888888777654 4455556666666676666666666665543
No 382
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=72.00 E-value=1.2e+02 Score=31.05 Aligned_cols=75 Identities=12% Similarity=0.069 Sum_probs=46.5
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHH
Q 005136 147 QNVISWTAAICGFVQNGFSFEALKLFLKLLES-GVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCN 223 (712)
Q Consensus 147 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 223 (712)
.|+..|...+.-+-+.+.+.+.-.+|..|... +-.|+...+.+. .-+-...+++.|..++...++.. +.++..+-
T Consensus 103 ~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~-wefe~n~ni~saRalflrgLR~n-pdsp~Lw~ 178 (568)
T KOG2396|consen 103 GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAK-WEFEINLNIESARALFLRGLRFN-PDSPKLWK 178 (568)
T ss_pred CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhh-hHHhhccchHHHHHHHHHHhhcC-CCChHHHH
Confidence 37888888888777777788888888888764 233333333221 12223334788888887777654 33334443
No 383
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=71.68 E-value=1.2e+02 Score=30.62 Aligned_cols=349 Identities=12% Similarity=0.032 Sum_probs=0.0
Q ss_pred hHHHHHHhcCCChhHhHHHHhhc---CCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHccC----
Q 005136 60 TRLLIMYLGSRKSLEANEIVKDL---NGFDLVVHNCMINANIQWGNLEEAQRLFDGMPERNEVSWTALISGFMKHG---- 132 (712)
Q Consensus 60 ~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g---- 132 (712)
+.++.-|...|+..+|.++.+.. .-.+..+-.+++.+...+-.-.-.+.++.+..+.+..+.+-+..+|.|.+
T Consensus 218 n~~l~eyv~~getrea~rciR~L~vsffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr~~~sld 297 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIRELGVSFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSRKGGSLD 297 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhCCCchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCchhhccccc
Q ss_pred ----ChHHHHHHhhhCCCCCcc---------------------------cHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 005136 133 ----RVEESMWYFERNPFQNVI---------------------------SWTAAICGFVQNGFSFEALKLFLKLLESGVK 181 (712)
Q Consensus 133 ----~~~~a~~~~~~~~~~~~~---------------------------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 181 (712)
+...|...|+.+..+.+. ....+|+-|...|+..+..+.++.+-.-...
T Consensus 298 dl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~~r~Fkk~~~~IIqEYFlsgDt~Evi~~L~DLn~~E~~ 377 (645)
T KOG0403|consen 298 DLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSENLRAFKKDLTPIIQEYFLSGDTPEVIRSLRDLNLPEYN 377 (645)
T ss_pred cccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchHHHHHHHhhHHHHHHHHhcCChHHHHHHHHHcCCcccc
Q ss_pred CCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHH
Q 005136 182 PNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFI 261 (712)
Q Consensus 182 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~ 261 (712)
....-..+--++-+..+..+.-.++-.-+--.+-++..+-+.+...+ ..-.+.|+.+..
T Consensus 378 -~~f~k~lITLAldrK~~ekEMasvllS~L~~e~fsteDv~~~F~mLL--esaedtALD~p~------------------ 436 (645)
T KOG0403|consen 378 -PGFLKLLITLALDRKNSEKEMASVLLSDLHGEVFSTEDVEKGFDMLL--ESAEDTALDIPR------------------ 436 (645)
T ss_pred -chHHHHHHHHHhccchhHHHHHHHHHHHhhcccCCHHHHHHHHHHHH--hcchhhhccccc------------------
Q ss_pred hcCCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHH
Q 005136 262 EMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAH 341 (712)
Q Consensus 262 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 341 (712)
-.++.-.++.+..-.++-+=..+=....+..-...+.+.++.... +-.-...=..+++++..-|--..+...-++
T Consensus 437 ---a~~elalFlARAViDdVLap~~leei~~~lp~~s~g~et~~~Ars--Llsar~aGeRllr~WGgGG~g~sVed~kdk 511 (645)
T KOG0403|consen 437 ---ASQELALFLARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARS--LLSARHAGERLLRVWGGGGGGWSVEDAKDK 511 (645)
T ss_pred ---cHHHHHHHHHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHH--HHHHhhcccchhheecCCCCcchHHHHHHH
Q ss_pred HHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHH
Q 005136 342 VLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSA 421 (712)
Q Consensus 342 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 421 (712)
+.. |+.-|...|++.+|.+.++++.-........+.+++.+.-+.|+-...+.+++..-+....|-+.
T Consensus 512 I~~------------LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglIT~nQ 579 (645)
T KOG0403|consen 512 IDM------------LLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLITTNQ 579 (645)
T ss_pred HHH------------HHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCceeHHH
Q ss_pred HHHHHHhcC--------ChhHHHHHHHHHHHCC
Q 005136 422 IISGYLEHK--------QFDLVFAVFNEMLLSG 446 (712)
Q Consensus 422 l~~~~~~~~--------~~~~a~~~~~~~~~~g 446 (712)
+-++|.+-. +...|.+.|+...+.+
T Consensus 580 MtkGf~RV~dsl~DlsLDvPna~ekf~~~Ve~~ 612 (645)
T KOG0403|consen 580 MTKGFERVYDSLPDLSLDVPNAYEKFERYVEEC 612 (645)
T ss_pred hhhhhhhhhccCcccccCCCcHHHHHHHHHHHH
No 384
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=70.85 E-value=42 Score=30.55 Aligned_cols=78 Identities=9% Similarity=-0.035 Sum_probs=32.1
Q ss_pred cCChHHHHHHhccCC--CCCcc-hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHhcccCcHHHHHHH
Q 005136 499 SGDIESSRRVFDRMP--DKNEI-SWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTI-LSVLFACSHSGLVDKGLKY 574 (712)
Q Consensus 499 ~g~~~~A~~~~~~~~--~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~ 574 (712)
..+++.|...|.+.. .|++. -|..=+..+.+.++++.+.+--.+.++ +.||..-- ..+.........++.|+..
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHHHH
Confidence 334444544444433 23332 233333444444555544444444444 44444321 1222233344444445444
Q ss_pred HHhc
Q 005136 575 FNSM 578 (712)
Q Consensus 575 ~~~~ 578 (712)
+.+.
T Consensus 101 Lqra 104 (284)
T KOG4642|consen 101 LQRA 104 (284)
T ss_pred HHHH
Confidence 4443
No 385
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.12 E-value=33 Score=32.48 Aligned_cols=98 Identities=11% Similarity=0.112 Sum_probs=59.3
Q ss_pred CCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC-CCc-----chHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 005136 481 GFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPD-KNE-----ISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELT 554 (712)
Q Consensus 481 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~ 554 (712)
|.+.+..+...++..-....+++.+...+-++.. ++. .+-... .-++-.=++++++.++..=++-|+-||..+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~-irlllky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTW-IRLLLKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHH-HHHHHccChHHHHHHHhCcchhccccchhh
Confidence 4444455555555555555666666666555542 111 011111 222333456677777777777788888888
Q ss_pred HHHHHHHhcccCcHHHHHHHHHhcc
Q 005136 555 ILSVLFACSHSGLVDKGLKYFNSME 579 (712)
Q Consensus 555 ~~~l~~~~~~~g~~~~a~~~~~~~~ 579 (712)
++.++..+.+.+++.+|..+.-.|.
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHH
Confidence 8888888888888888777766655
No 386
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.81 E-value=2e+02 Score=32.50 Aligned_cols=27 Identities=26% Similarity=0.549 Sum_probs=17.3
Q ss_pred eHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005136 283 SWSVMIARYNQSGYPEEAFRLFRQMTR 309 (712)
Q Consensus 283 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 309 (712)
-|..|+..|...|+.++|++++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 356666666666666666666666554
No 387
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=69.40 E-value=12 Score=23.56 Aligned_cols=26 Identities=15% Similarity=0.368 Sum_probs=18.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC
Q 005136 421 AIISGYLEHKQFDLVFAVFNEMLLSG 446 (712)
Q Consensus 421 ~l~~~~~~~~~~~~a~~~~~~~~~~g 446 (712)
.+..+|...|+.+.|..++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 35667777777777788888777654
No 388
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=68.23 E-value=17 Score=21.76 Aligned_cols=19 Identities=16% Similarity=0.293 Sum_probs=8.4
Q ss_pred HHHHHHHHhcCCchhHHHH
Q 005136 658 VLLSNIYASAGRWIDAMNV 676 (712)
Q Consensus 658 ~~l~~~~~~~g~~~eA~~~ 676 (712)
..++..+...|++++|+++
T Consensus 5 y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 3444444444444444444
No 389
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=68.20 E-value=65 Score=32.45 Aligned_cols=52 Identities=12% Similarity=0.051 Sum_probs=27.0
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHh--cccCcHHHHHHHHHhcc
Q 005136 527 LAESGYAKESINLFEEMEKTSITPNEL--TILSVLFAC--SHSGLVDKGLKYFNSME 579 (712)
Q Consensus 527 ~~~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~--~~~g~~~~a~~~~~~~~ 579 (712)
+...+++..|.+++..+... ++++.. .+..+..+| ...-++.+|.+.++...
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34556666666666666654 344333 233333333 23555666666666554
No 390
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=67.73 E-value=98 Score=29.08 Aligned_cols=89 Identities=11% Similarity=0.070 Sum_probs=53.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHH---
Q 005136 286 VMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYS--- 362 (712)
Q Consensus 286 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 362 (712)
.=|.+++..+++.+++...-+--+..-+.........|-.|++.+....+.++-..-+...-..+..-|.+++..|.
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 34677888888888877654443322222233444455556777888877777777666533334444666555554
Q ss_pred --hcCChHHHHHHH
Q 005136 363 --KCGETKDGRLVF 374 (712)
Q Consensus 363 --~~g~~~~A~~~~ 374 (712)
-.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 357777777766
No 391
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=67.30 E-value=1.1e+02 Score=28.83 Aligned_cols=50 Identities=10% Similarity=0.136 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhH
Q 005136 355 NALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEA 404 (712)
Q Consensus 355 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 404 (712)
+...+.|..+|.+.+|.++.++....++-+...|..++..+...|+--.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~ 332 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISA 332 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhh
Confidence 33445566666666666666666666655556666666666666665555
No 392
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=67.24 E-value=21 Score=26.46 Aligned_cols=33 Identities=12% Similarity=0.075 Sum_probs=15.7
Q ss_pred cCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCC
Q 005136 131 HGRVEESMWYFERNPFQNVISWTAAICGFVQNGF 164 (712)
Q Consensus 131 ~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~ 164 (712)
.|+.+.|++++..++ .....|..++.++-..|.
T Consensus 49 ~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~ 81 (88)
T cd08819 49 HGNESGARELLKRIV-QKEGWFSKFLQALRETEH 81 (88)
T ss_pred cCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCc
Confidence 344445555555444 444444444444444443
No 393
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=67.21 E-value=1.1e+02 Score=28.78 Aligned_cols=140 Identities=16% Similarity=0.085 Sum_probs=65.1
Q ss_pred HHhcCChhHHHHHHH----HHHHcCCCCCHhhHHHHHHHHhcccchH-HHHHHHHHHH---HhC--CCCCccHHHHHHHH
Q 005136 159 FVQNGFSFEALKLFL----KLLESGVKPNEVTFSSICKACAEINDFR-LGLSVFGLIF---KAG--FEKHVSVCNSLITL 228 (712)
Q Consensus 159 ~~~~g~~~~A~~~~~----~m~~~g~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~---~~~--~~~~~~~~~~li~~ 228 (712)
+.+.|+...|.++.. .+.+.+.+++......++..+...+.-+ .-.++.+.++ +.+ ..-++.....+...
T Consensus 20 ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~ 99 (260)
T PF04190_consen 20 LLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEK 99 (260)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHH
Confidence 445555554444433 3333456666665555555554432211 1222222222 222 22356777888888
Q ss_pred HHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHH
Q 005136 229 SLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMT 308 (712)
Q Consensus 229 ~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 308 (712)
+.+.|++..|...|-.-..++...+..++......|...++--. ..-.+-.|.-.++...|...+....
T Consensus 100 ~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlf-----------i~RaVL~yL~l~n~~~A~~~~~~f~ 168 (260)
T PF04190_consen 100 LWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLF-----------IARAVLQYLCLGNLRDANELFDTFT 168 (260)
T ss_dssp HHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHH-----------HHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHH-----------HHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 88889888888887654444443333334333333333322111 1122334555677777777776655
Q ss_pred h
Q 005136 309 R 309 (712)
Q Consensus 309 ~ 309 (712)
+
T Consensus 169 ~ 169 (260)
T PF04190_consen 169 S 169 (260)
T ss_dssp H
T ss_pred H
Confidence 4
No 394
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=66.37 E-value=66 Score=30.14 Aligned_cols=87 Identities=8% Similarity=0.022 Sum_probs=46.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHH-----
Q 005136 423 ISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYA----- 497 (712)
Q Consensus 423 ~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 497 (712)
|.+++..+++.+++...-..-+..-+.-.......|-.|.+.+.+..+.++-..-....-.-+..-|..+++.|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 444555555555555544443322222234444555567777777776666655554322223333565555554
Q ss_pred hcCChHHHHHHh
Q 005136 498 KSGDIESSRRVF 509 (712)
Q Consensus 498 ~~g~~~~A~~~~ 509 (712)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 357777777766
No 395
>PRK10941 hypothetical protein; Provisional
Probab=65.11 E-value=39 Score=31.90 Aligned_cols=66 Identities=12% Similarity=0.111 Sum_probs=44.6
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCch
Q 005136 591 YTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAG 656 (712)
Q Consensus 591 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 656 (712)
.+.+-.+|.+.++++.|..+.+.+ ...|+ +.-+.--.-.|.+.|.+..|..-++..++..|++|.+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 345566677777888887777776 34444 4445555555777778888888777777777776653
No 396
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=65.10 E-value=13 Score=33.29 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=29.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC
Q 005136 615 PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAE 651 (712)
Q Consensus 615 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 651 (712)
...|++..+..++..+...|+.++|.+..+++..+.|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4567888888777777888888888888888888777
No 397
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=65.05 E-value=49 Score=33.52 Aligned_cols=63 Identities=21% Similarity=0.258 Sum_probs=48.4
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCc
Q 005136 625 SLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLRKSGG 690 (712)
Q Consensus 625 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~ 690 (712)
.-+.++....+...+.+-.+-+.....+++.....-...++..|++.+|.+++. ..|+.+++|
T Consensus 211 ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~---~sni~~~~g 273 (696)
T KOG2471|consen 211 YKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLL---VSNIHKEAG 273 (696)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHH---hcccccccC
Confidence 334456667777888887888877777888888888999999999999998754 456666555
No 398
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=64.08 E-value=28 Score=29.00 Aligned_cols=65 Identities=11% Similarity=0.068 Sum_probs=46.1
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchh
Q 005136 605 SEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWID 672 (712)
Q Consensus 605 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~e 672 (712)
+.|.++.+-|+ ...............|++..|.++...++..+|+|..+-...+.+|.+.|...+
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 45666666664 334444555556789999999999999999999999999999988887775444
No 399
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=64.02 E-value=54 Score=25.81 Aligned_cols=29 Identities=21% Similarity=0.369 Sum_probs=19.7
Q ss_pred CchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 654 PAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 654 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
..-|..|+..|...|..++|+++|.++.+
T Consensus 39 ~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 39 HGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred cCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 34566677777777777777777776655
No 400
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=63.41 E-value=5.7 Score=39.80 Aligned_cols=101 Identities=11% Similarity=0.075 Sum_probs=73.9
Q ss_pred HHHHhcccCcHHHHHHHHHhcchhcCCCCchH-HHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcC
Q 005136 558 VLFACSHSGLVDKGLKYFNSMEPIYNIKPNGR-HYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYK 634 (712)
Q Consensus 558 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g 634 (712)
-+......+.++.|+.++.+++ .+.||.. .|..-..++.+.+++..|+.=+.++ ...|. ...|..-..+|...+
T Consensus 10 ean~~l~~~~fd~avdlysKaI---~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAI---ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHH---hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 4556677889999999999998 4588544 4444558888999999888655554 55665 333444455677888
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHH
Q 005136 635 NEQIAERAVKNLWKLAEEHPAGYVLLS 661 (712)
Q Consensus 635 ~~~~a~~~~~~~~~~~p~~~~~~~~l~ 661 (712)
.+.+|...++....+.|+++.+...+-
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKID 113 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHH
Confidence 999999999999999999876554443
No 401
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=63.10 E-value=2.3e+02 Score=30.91 Aligned_cols=19 Identities=26% Similarity=0.564 Sum_probs=10.3
Q ss_pred HHhcCChhHHHHHHHHHHH
Q 005136 426 YLEHKQFDLVFAVFNEMLL 444 (712)
Q Consensus 426 ~~~~~~~~~a~~~~~~~~~ 444 (712)
|--.++++.+++++.+.+.
T Consensus 437 y~La~~~d~vl~lln~~Ls 455 (613)
T PF04097_consen 437 YHLAEEYDKVLSLLNRLLS 455 (613)
T ss_dssp HHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 3444566666666666543
No 402
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=61.81 E-value=33 Score=25.50 Aligned_cols=32 Identities=13% Similarity=0.216 Sum_probs=14.7
Q ss_pred CChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCC
Q 005136 365 GETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQ 400 (712)
Q Consensus 365 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 400 (712)
|+.+.|.+++..+. ++ +..|..++.++...|.
T Consensus 50 g~~~~ar~LL~~L~-rg---~~aF~~Fl~aLreT~~ 81 (88)
T cd08819 50 GNESGARELLKRIV-QK---EGWFSKFLQALRETEH 81 (88)
T ss_pred CcHHHHHHHHHHhc-cC---CcHHHHHHHHHHHcCc
Confidence 44444555555444 33 3444444444444443
No 403
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=60.70 E-value=1.6e+02 Score=28.29 Aligned_cols=77 Identities=16% Similarity=-0.006 Sum_probs=41.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHh----hcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC-------------
Q 005136 606 EAEDFINSMPFEPDSNAWASLLSGCK----TYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAG------------- 668 (712)
Q Consensus 606 ~A~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------- 668 (712)
.|...+.++-..-+......+...|. ...+.++|..+++++-+... +.....++ ++...|
T Consensus 173 ~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~ 249 (292)
T COG0790 173 KALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAK 249 (292)
T ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccccc
Confidence 45566655522223333333333322 23366777777777766655 55556666 555444
Q ss_pred --CchhHHHHHHHHHhCCC
Q 005136 669 --RWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 669 --~~~eA~~~~~~~~~~~~ 685 (712)
+...|...+......+.
T Consensus 250 ~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 250 EEDKKQALEWLQKACELGF 268 (292)
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 56666777666665554
No 404
>PF13934 ELYS: Nuclear pore complex assembly
Probab=60.50 E-value=1.1e+02 Score=28.03 Aligned_cols=114 Identities=11% Similarity=0.111 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhh--ccchhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHHHHhhcCC--CCcchHHHHHHH
Q 005136 21 IETCLCLLKDIT--SQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVKDLNG--FDLVVHNCMINA 96 (712)
Q Consensus 21 ~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~ 96 (712)
+..|..+++++- ..+++++|.+++ ..+.........++..+...|+...|...++.+.+ .+...-..++.+
T Consensus 76 p~~~~~~~~g~W~LD~~~~~~A~~~L-----~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 76 PPKYIKFIQGFWLLDHGDFEEALELL-----SHPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA 150 (226)
T ss_pred CHHHHHHHHHHHHhChHhHHHHHHHh-----CCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH
Q ss_pred HHhcCChHHHHHHHhhCCCCC-hhHHHHHHHHHH----ccCChHHHHHH
Q 005136 97 NIQWGNLEEAQRLFDGMPERN-EVSWTALISGFM----KHGRVEESMWY 140 (712)
Q Consensus 97 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~----~~g~~~~a~~~ 140 (712)
..++.+.+|..+-+...+.. ...+..++..+. +.+..++-..+
T Consensus 151 -La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHhhhhhHHHHHHhC
No 405
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=60.42 E-value=22 Score=25.81 Aligned_cols=18 Identities=11% Similarity=0.117 Sum_probs=7.9
Q ss_pred HHHHHHhhhcCChHHHHH
Q 005136 592 TCVVDMLSRSGRLSEAED 609 (712)
Q Consensus 592 ~~l~~~~~~~g~~~~A~~ 609 (712)
..++.+|+.-|++.++++
T Consensus 47 G~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 47 GYLIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 406
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=60.21 E-value=1.3e+02 Score=28.00 Aligned_cols=59 Identities=8% Similarity=0.077 Sum_probs=36.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc-cCcHHHHHHHHHhcch
Q 005136 522 VMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSH-SGLVDKGLKYFNSMEP 580 (712)
Q Consensus 522 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~ 580 (712)
.+++...+.|+++++...++++...+...+..--+.+..+|-. .|....+++++..+..
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 3566677888888888888888887655565555555555532 3555566666665553
No 407
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=60.05 E-value=2.6e+02 Score=30.46 Aligned_cols=185 Identities=12% Similarity=0.078 Sum_probs=96.7
Q ss_pred HhcCChHHHHHHhccCCC-CCcch----HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHH
Q 005136 497 AKSGDIESSRRVFDRMPD-KNEIS----WTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKG 571 (712)
Q Consensus 497 ~~~g~~~~A~~~~~~~~~-~~~~~----~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 571 (712)
..-|+-++|..+.+++.. +|+.. .-.+..+|+-.|+.....+++.-.+.. ...|..-...+.-++.-..+++..
T Consensus 512 ~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp~~~ 590 (929)
T KOG2062|consen 512 VVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDPEQL 590 (929)
T ss_pred HHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecChhhc
Confidence 334556677777777662 34332 223455677777766666666554442 233444444455556666777777
Q ss_pred HHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC
Q 005136 572 LKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAE 651 (712)
Q Consensus 572 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 651 (712)
..+.+.+.+.++....-.+--+|+-+|+-.|. .+|+.+++.|...|........+ ...|.-+.+.--++.|
T Consensus 591 ~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~D~~~fVRQgAl--------Ia~amIm~Q~t~~~~p 661 (929)
T KOG2062|consen 591 PSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTSDPVDFVRQGAL--------IALAMIMIQQTEQLCP 661 (929)
T ss_pred hHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhcChHHHHHHHHH--------HHHHHHHHhcccccCc
Confidence 77777776443322233344445555555554 57888888885444332221111 1122233333333444
Q ss_pred CCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCcccE
Q 005136 652 EHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLRKSGGCSW 693 (712)
Q Consensus 652 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~ 693 (712)
.-..+--.+.++- ..+.++.+.-|-..+.+|+-...|.+.
T Consensus 662 kv~~frk~l~kvI--~dKhEd~~aK~GAilAqGildaGGrNv 701 (929)
T KOG2062|consen 662 KVNGFRKQLEKVI--NDKHEDGMAKFGAILAQGILDAGGRNV 701 (929)
T ss_pred hHHHHHHHHHHHh--hhhhhHHHHHHHHHHHhhhhhcCCceE
Confidence 4222222222222 234566666677777888877666543
No 408
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=59.62 E-value=1.6e+02 Score=27.78 Aligned_cols=133 Identities=13% Similarity=0.127 Sum_probs=78.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHhccCchHHHHHHHHHHHH----cCCCCchhhHH
Q 005136 422 IISGYLEHKQFDLVFAVFNEMLLSGEIPNKS-------TFSSVLCASASVASLEKGKDLHGKIIK----LGFPYDVFLGT 490 (712)
Q Consensus 422 l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~-------~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~ 490 (712)
+.+-..+.+++++|+..+.+.+..|+..+.. +...+...|.+.|++..-.+......+ -.-+-...+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 4455677888888899999999998877654 455667778888887766655544332 12223444555
Q ss_pred HHHHHHHhc-CChHHHHHHhccCCC-----CCc----chHHHHHHHHHHcCChHHHHHHHHH----HHHcCCCCCHHH
Q 005136 491 ALTDTYAKS-GDIESSRRVFDRMPD-----KNE----ISWTVMVRGLAESGYAKESINLFEE----MEKTSITPNELT 554 (712)
Q Consensus 491 ~l~~~~~~~-g~~~~A~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~p~~~~ 554 (712)
.|++.+-.. ..++....+.....+ +.. ..-..++..+.+.|.+.+|+.+... +.+..-+|+..+
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 666555432 334555555444331 111 1123356667777788777766543 333344555444
No 409
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.27 E-value=97 Score=34.16 Aligned_cols=130 Identities=14% Similarity=0.131 Sum_probs=88.4
Q ss_pred HHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHH
Q 005136 495 TYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKY 574 (712)
Q Consensus 495 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 574 (712)
....+|+++.|.+.-..+- +..+|..|.......|+.+-|...|++... |..|-..|.-.|+.++-.++
T Consensus 652 LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHH
Confidence 3557799999988777655 455799999999999999999999987665 44455567778888887776
Q ss_pred HHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 005136 575 FNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWK 648 (712)
Q Consensus 575 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 648 (712)
-+-+. ...|..... ... .-.|+.++-.++++..+..|-. |. ....+|.-++|+++.+..-.
T Consensus 721 ~~iae----~r~D~~~~~-qna--lYl~dv~ervkIl~n~g~~~la--yl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 721 MKIAE----IRNDATGQF-QNA--LYLGDVKERVKILENGGQLPLA--YL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHH----hhhhhHHHH-HHH--HHhccHHHHHHHHHhcCcccHH--HH----HHhhcCcHHHHHHHHHhhcc
Confidence 65553 122322211 111 2367888888888887644421 11 12358888999998888765
No 410
>PHA02875 ankyrin repeat protein; Provisional
Probab=59.16 E-value=2.2e+02 Score=29.23 Aligned_cols=113 Identities=11% Similarity=0.024 Sum_probs=55.0
Q ss_pred HHhhccchhhhhhhHHHHHHHhCCCCcchh--hhHHHHHHhcCCChhHhHHHHhhcCCCCcc--hHHHHHHHHHhcCChH
Q 005136 29 KDITSQNLVIQGRALHGHLIKTGIHKERYL--TTRLLIMYLGSRKSLEANEIVKDLNGFDLV--VHNCMINANIQWGNLE 104 (712)
Q Consensus 29 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~ 104 (712)
...+..|+. ++.+.+++.|..++... -.+.+...+..|+.+-+.-+++.-..|+.. ....-+...+..|+.+
T Consensus 7 ~~A~~~g~~----~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~ 82 (413)
T PHA02875 7 CDAILFGEL----DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVK 82 (413)
T ss_pred HHHHHhCCH----HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHH
Confidence 334455554 33445556676665433 233445555667766666555544333221 1122334444667776
Q ss_pred HHHHHHhhCCCC----ChhHHHHHHHHHHccCChHHHHHHhhhCCC
Q 005136 105 EAQRLFDGMPER----NEVSWTALISGFMKHGRVEESMWYFERNPF 146 (712)
Q Consensus 105 ~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 146 (712)
.+..+++.-... +... .+.+...+..|+.+-+..+++....
T Consensus 83 ~v~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~~~~~iv~~Ll~~gad 127 (413)
T PHA02875 83 AVEELLDLGKFADDVFYKDG-MTPLHLATILKKLDIMKLLIARGAD 127 (413)
T ss_pred HHHHHHHcCCcccccccCCC-CCHHHHHHHhCCHHHHHHHHhCCCC
Confidence 666666543221 1111 1233344556666666666665443
No 411
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=59.07 E-value=13 Score=37.37 Aligned_cols=102 Identities=11% Similarity=0.121 Sum_probs=74.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhc
Q 005136 524 VRGLAESGYAKESINLFEEMEKTSITPNELTILSV-LFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRS 601 (712)
Q Consensus 524 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 601 (712)
+..+...+.++.|+.++.++++ +.||...|... ..++.+.+++..|+.=+..+.+ ..| ....|..-+.++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie---~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIE---LDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhh---cCchhhheeeeccHHHHhH
Confidence 4566778899999999999999 78977665444 3788999999999987777762 356 334444455566667
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 005136 602 GRLSEAEDFINSM-PFEPDSNAWASLLSGC 630 (712)
Q Consensus 602 g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~ 630 (712)
+++.+|...|+.. ...|+..-....+.-|
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 7888888888877 5677766655555544
No 412
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=57.36 E-value=55 Score=26.33 Aligned_cols=50 Identities=12% Similarity=0.202 Sum_probs=38.1
Q ss_pred HHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 005136 611 INSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLL 660 (712)
Q Consensus 611 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 660 (712)
+-.+...|++..+...+.+|.+-+|+..|.++++-+...-+....+|-.+
T Consensus 75 l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 75 LFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYY 124 (149)
T ss_pred hhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 33446789999999999999999999999999998876655544444433
No 413
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=57.23 E-value=1.6e+02 Score=26.99 Aligned_cols=132 Identities=11% Similarity=0.124 Sum_probs=0.0
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 005136 418 SWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYA 497 (712)
Q Consensus 418 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 497 (712)
.....+..|...-++..|....++..+ +.--...+--|.+..+.+--..+.+-....+++.+..-...++ +.
T Consensus 132 AlRRtMEiyS~ttRFalaCN~s~KIiE------PIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--ft 203 (333)
T KOG0991|consen 132 ALRRTMEIYSNTTRFALACNQSEKIIE------PIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FT 203 (333)
T ss_pred HHHHHHHHHcccchhhhhhcchhhhhh------hHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hh
Q ss_pred hcCChHHHHHHhccCC----------------CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005136 498 KSGDIESSRRVFDRMP----------------DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSV 558 (712)
Q Consensus 498 ~~g~~~~A~~~~~~~~----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 558 (712)
..|+...|..-++.-. +|.+.....++..+...+ +++|.+++.++.+.|+.|....-+..
T Consensus 204 a~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~~~-~~~A~~il~~lw~lgysp~Dii~~~F 279 (333)
T KOG0991|consen 204 AQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLKRN-IDEALKILAELWKLGYSPEDIITTLF 279 (333)
T ss_pred ccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHhcc-HHHHHHHHHHHHHcCCCHHHHHHHHH
No 414
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=56.07 E-value=70 Score=27.84 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=14.5
Q ss_pred HHhhcCCHHHHHHHHHHHhccCCCCCch
Q 005136 629 GCKTYKNEQIAERAVKNLWKLAEEHPAG 656 (712)
Q Consensus 629 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 656 (712)
.|.+.|.+++|++++++... +|++..-
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 35555555555555555555 4444433
No 415
>PRK13342 recombination factor protein RarA; Reviewed
Probab=55.94 E-value=2.5e+02 Score=28.88 Aligned_cols=168 Identities=15% Similarity=0.085 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHc---CC-CCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHH
Q 005136 331 ALRSGMHVHAHVLKI---GI-EKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKE 406 (712)
Q Consensus 331 ~~~~a~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 406 (712)
..++...++...... ++ ..+......++... .|+...+..+++.+... ...........+..
T Consensus 152 s~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~------------~~~It~~~v~~~~~ 217 (413)
T PRK13342 152 SEEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALG------------VDSITLELLEEALQ 217 (413)
T ss_pred CHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHc------------cCCCCHHHHHHHHh
Q ss_pred HhhcCCCCCcccHHHHHHHHHhc---CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-----chHHHHHHHHHHH
Q 005136 407 LFDNMPKRNDVSWSAIISGYLEH---KQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVA-----SLEKGKDLHGKII 478 (712)
Q Consensus 407 ~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~ 478 (712)
.......++......++.++.+. ++++.|+.++..|.+.|..|....-..++.++...| ....|...++...
T Consensus 218 ~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~ 297 (413)
T PRK13342 218 KRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVE 297 (413)
T ss_pred hhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHH
Q ss_pred HcCCCCchhhHHHHHHHHHhcCChHHHHHHhccC
Q 005136 479 KLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRM 512 (712)
Q Consensus 479 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 512 (712)
..|++-........+-.++.+-+...+...++..
T Consensus 298 ~~g~pe~~~~l~~~~~~l~~~pksn~~~~a~~~a 331 (413)
T PRK13342 298 RIGMPEGRIALAQAVIYLALAPKSNAAYTAINAA 331 (413)
T ss_pred HhCCcHHHHHHHHHHHHHHcCCCccHHHHHHHHH
No 416
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=55.46 E-value=3.9e+02 Score=31.01 Aligned_cols=52 Identities=8% Similarity=-0.115 Sum_probs=24.1
Q ss_pred HHHhhCCCCChhHHHHHHHHHHccCChHHHHHHhhhCCCCCcccHHHHHHHH
Q 005136 108 RLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGF 159 (712)
Q Consensus 108 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~ 159 (712)
.+...+.++++.+...-+..+.+.+..+-...+...+..++...-...+.++
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL 676 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGL 676 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3344444566666555566655555443333333334444443333444433
No 417
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=54.34 E-value=56 Score=26.27 Aligned_cols=47 Identities=11% Similarity=0.225 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHc
Q 005136 299 EAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKI 345 (712)
Q Consensus 299 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 345 (712)
+..+-++.+....+.|++......+++|.+.+++..|.++++-++..
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34444555555566666666666666666666666666666665543
No 418
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=54.27 E-value=51 Score=21.26 Aligned_cols=33 Identities=18% Similarity=0.262 Sum_probs=20.0
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 005136 160 VQNGFSFEALKLFLKLLESGVKPNEVTFSSICK 192 (712)
Q Consensus 160 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 192 (712)
.+.|-..++..++++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666666666666666666666655555543
No 419
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=54.09 E-value=86 Score=25.57 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcc--CCCCCchHHHHHHHHHhcCCchhHHHHHHH
Q 005136 638 IAERAVKNLWKL--AEEHPAGYVLLSNIYASAGRWIDAMNVRKL 679 (712)
Q Consensus 638 ~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 679 (712)
.+..+++.+... .-..+.+|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 677777777654 344567788888888888888888888764
No 420
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=53.93 E-value=36 Score=30.72 Aligned_cols=48 Identities=13% Similarity=0.239 Sum_probs=22.6
Q ss_pred ccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC
Q 005136 564 HSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM 614 (712)
Q Consensus 564 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 614 (712)
+.+|.+.+.+++.++. ++.| +...|..++..-.+.|+++.|.+.+++.
T Consensus 7 ~~~D~~aaaely~qal---~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~ 55 (287)
T COG4976 7 ESGDAEAAAELYNQAL---ELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEV 55 (287)
T ss_pred ccCChHHHHHHHHHHh---hcCchhhhhhhhcchhhhhcccHHHHHHHHHHH
Confidence 3445555555555444 3333 3444444444444555555544444443
No 421
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=53.87 E-value=29 Score=21.08 Aligned_cols=28 Identities=21% Similarity=0.175 Sum_probs=24.1
Q ss_pred chHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 655 AGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 655 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
.+|..||.+-...+++++|.+=+++.++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5788899999999999999998887765
No 422
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.38 E-value=51 Score=29.37 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=17.3
Q ss_pred CCCCchHHHHHHHHHhhhcCChHHHHHHHHhC
Q 005136 583 NIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM 614 (712)
Q Consensus 583 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 614 (712)
...|++..+..++.++...|+.++|....+++
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555555555555555555555555555554
No 423
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.27 E-value=18 Score=34.68 Aligned_cols=118 Identities=13% Similarity=0.063 Sum_probs=71.5
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCc-hHHHHHHHHHhhhcCChH
Q 005136 527 LAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPN-GRHYTCVVDMLSRSGRLS 605 (712)
Q Consensus 527 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 605 (712)
....|.++.|++.+...+... +|....|..-..++.+.+....|++=+.... .+.|| ..-|-.-..+....|+|+
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~---ein~Dsa~~ykfrg~A~rllg~~e 199 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAI---EINPDSAKGYKFRGYAERLLGNWE 199 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhh---ccCcccccccchhhHHHHHhhchH
Confidence 455677888888888887742 3344556666677778888888888777666 44664 334444455556678888
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 005136 606 EAEDFINSM-PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWK 648 (712)
Q Consensus 606 ~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 648 (712)
+|...+... ...-+..+-..+-...-..+..++-...+++..+
T Consensus 200 ~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 200 EAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHHHHH
Confidence 888877765 3333333333333334445555555555555443
No 424
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=52.84 E-value=98 Score=33.39 Aligned_cols=99 Identities=15% Similarity=0.195 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH----------HHHHHHHhcccCcHHHHHHHHHhcchhcC-CCCc
Q 005136 519 SWTVMVRGLAESGYAKESINLFEEMEKTSITPNELT----------ILSVLFACSHSGLVDKGLKYFNSMEPIYN-IKPN 587 (712)
Q Consensus 519 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~----------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~p~ 587 (712)
+...++-.|....+++..+++.+.+.. -||..- |.-.+.---+-||-++|+...-.+.++.| +.||
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 456677778888899999999988877 243211 22222222356888888887766664433 3444
Q ss_pred hHHHHHHHHH---------hhhcCChHHHHHHHHhC-CCCCCHHH
Q 005136 588 GRHYTCVVDM---------LSRSGRLSEAEDFINSM-PFEPDSNA 622 (712)
Q Consensus 588 ~~~~~~l~~~---------~~~~g~~~~A~~~~~~~-~~~p~~~~ 622 (712)
. |...++. |...+..+.|.++|++. ..+|....
T Consensus 280 m--~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~s 322 (1226)
T KOG4279|consen 280 M--YCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYS 322 (1226)
T ss_pred e--eeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhc
Confidence 3 3333332 33455677788888887 56676444
No 425
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.83 E-value=3.1e+02 Score=28.90 Aligned_cols=191 Identities=14% Similarity=0.121 Sum_probs=106.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHhccCC-------CCC-----------------cchHH---HHHHHHHHcCChHHHHHHH
Q 005136 488 LGTALTDTYAKSGDIESSRRVFDRMP-------DKN-----------------EISWT---VMVRGLAESGYAKESINLF 540 (712)
Q Consensus 488 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-----------------~~~~~---~l~~~~~~~~~~~~A~~~~ 540 (712)
..-.+..++..+|+.+.|..++++.. .|. -..|- ..+..+.+.|-+..|.+..
T Consensus 286 sLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~c 365 (665)
T KOG2422|consen 286 SLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWC 365 (665)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 33344556677787776666555432 221 11222 2345667889999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhc-ccCcHHHHHHHHHhcchh--cCCCCchHHHHHHHHHhhhcCC---hHHHHHHHHhC
Q 005136 541 EEMEKTSITPNELTILSVLFACS-HSGLVDKGLKYFNSMEPI--YNIKPNGRHYTCVVDMLSRSGR---LSEAEDFINSM 614 (712)
Q Consensus 541 ~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~--~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~ 614 (712)
+-+.+....-|......++..|+ +..++.-.+++++..... ...-||...-.+|+..|.+... .+.|...+.++
T Consensus 366 KlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qA 445 (665)
T KOG2422|consen 366 KLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQA 445 (665)
T ss_pred HHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHH
Confidence 98888433334566667777664 677888888888877432 2345666666677777776665 44555555554
Q ss_pred -CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhc-cCCCCCchHHHHHHHHHhcC----CchhHHHHHHHHHh
Q 005136 615 -PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWK-LAEEHPAGYVLLSNIYASAG----RWIDAMNVRKLMTE 682 (712)
Q Consensus 615 -~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g----~~~eA~~~~~~~~~ 682 (712)
..-| ..+..|+..+.-..+ .+...++-.-. .....+.++..+..+|+... +..+++.+++....
T Consensus 446 l~~~P--~vl~eLld~~~l~~d--a~~~~~k~~~~~a~~~e~pal~~lv~lY~~r~~~vWk~P~~ls~l~~~~~ 515 (665)
T KOG2422|consen 446 LKHHP--LVLSELLDELLLGDD--ALTKDLKFDGSSAENSELPALMLLVKLYANRNEEVWKLPDVLSFLESAYH 515 (665)
T ss_pred HHhCc--HHHHHHHHhccCCch--hhhhhhcccccccccccchHHHHHHHHHHhhhhHhhcChHHHHHHHHHHH
Confidence 2233 233344444322211 11111111111 11113568889999988655 23455555555444
No 426
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=50.50 E-value=2.8e+02 Score=27.92 Aligned_cols=71 Identities=13% Similarity=0.153 Sum_probs=39.3
Q ss_pred CcccHHHHHHHHH---hcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccc-----hHHHHHHHHHHHHhCCCCC
Q 005136 148 NVISWTAAICGFV---QNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEIND-----FRLGLSVFGLIFKAGFEKH 218 (712)
Q Consensus 148 ~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~ 218 (712)
+-..+.-+|+++. +..+++.|+-++-+|++.|-.|....-..++.+.-.-|. ...|...++.....|.+..
T Consensus 245 ~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIGlAdP~Al~~a~aa~da~~~lG~PE~ 323 (436)
T COG2256 245 DGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIGLADPNALQVAVAALDAVERLGSPEA 323 (436)
T ss_pred CcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHHhCCchH
Confidence 4445556666663 346777778888888877766655444444444443332 2234444455555554433
No 427
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=50.25 E-value=60 Score=30.35 Aligned_cols=58 Identities=22% Similarity=0.173 Sum_probs=45.3
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 625 SLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 625 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
.+-..+.+.++++.|....++.+.++|++|.-..--|-+|.+.|-+.-|++-++...+
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 3344477888888888888888888888887777788888888888888887777554
No 428
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.24 E-value=3.3e+02 Score=28.73 Aligned_cols=53 Identities=13% Similarity=0.039 Sum_probs=26.8
Q ss_pred HHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHH-ccCChHHHHHHHhhc
Q 005136 193 ACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSL-KMGEVDLARSVFDRM 245 (712)
Q Consensus 193 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~~ 245 (712)
.+.+.|-+..|.++-..+.+..+.-|+.....+|+.|+ +..++.-.+++++..
T Consensus 351 ~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 351 SLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33445555555555555555554445555555555544 344455555555433
No 429
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=49.49 E-value=28 Score=32.87 Aligned_cols=77 Identities=6% Similarity=0.103 Sum_probs=47.5
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH-HhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSG-CKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNI 663 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 663 (712)
|+..|...+..-.+.|.+.+...++... ...| +...|.....- +...++++.+..++.+.+..+|++|.++....+.
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~ 185 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRM 185 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHH
Confidence 4555555544444555555555555554 3333 34444442322 6678888888888999998888888877655543
No 430
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=49.34 E-value=1.4e+02 Score=28.71 Aligned_cols=54 Identities=11% Similarity=0.038 Sum_probs=31.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHhcccCcHHHHHHHHHh
Q 005136 522 VMVRGLAESGYAKESINLFEEMEKTSITPNELT---ILSVLFACSHSGLVDKGLKYFNS 577 (712)
Q Consensus 522 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~a~~~~~~ 577 (712)
.|..+..+.|+..+|.+.++.+.+. .|-... -..|+.+|....-+.....++-+
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555778888888888877663 332222 23566666666555555554443
No 431
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=48.98 E-value=93 Score=24.52 Aligned_cols=27 Identities=15% Similarity=0.479 Sum_probs=21.9
Q ss_pred eHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005136 283 SWSVMIARYNQSGYPEEAFRLFRQMTR 309 (712)
Q Consensus 283 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 309 (712)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477888888888888888888888766
No 432
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=48.87 E-value=4.9e+02 Score=30.22 Aligned_cols=262 Identities=12% Similarity=0.014 Sum_probs=139.7
Q ss_pred HHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHccCCh-HHHHHHhhhCCCCCcccHHHH
Q 005136 77 EIVKDLNGFDLVVHNCMINANIQWGNLEEAQRLFDGMPERNEVSWTALISGFMKHGRV-EESMWYFERNPFQNVISWTAA 155 (712)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~l 155 (712)
.+.+.+..+++.+-..-+..+.+.+..+....+...+.+++...-...+.++.+.+.. .....+...+..+|...-...
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A 704 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAA 704 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHH
Confidence 4444455677777767777777766644334444444555555555555554443221 111122222333555544455
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCCh
Q 005136 156 ICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEV 235 (712)
Q Consensus 156 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 235 (712)
+.++...+..+ .. .+-.+.+ .+|...-...+.++...+..+.. . ..--.++..+-...+.++...+..
T Consensus 705 ~~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~l----~---~~l~D~~~~VR~~aa~aL~~~~~~ 772 (897)
T PRK13800 705 LDVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVESV----A---GAATDENREVRIAVAKGLATLGAG 772 (897)
T ss_pred HHHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHHH----H---HHhcCCCHHHHHHHHHHHHHhccc
Confidence 55554433221 11 2222332 34554445556666665543321 1 111245666666777777766654
Q ss_pred HH-HHHHHhh-cCCCCcchHHHHHHHHHhcCCHHHHH-HHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 005136 236 DL-ARSVFDR-MEKRDVVSWTVILDVFIEMGDLGEAR-RIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSF 312 (712)
Q Consensus 236 ~~-a~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 312 (712)
+. +...+.. +..++...-...+..+.+.|....+. .+...+..++...-...+.++...+. +++...+-.+..
T Consensus 773 ~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~--- 848 (897)
T PRK13800 773 GAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT--- 848 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc---
Confidence 43 2333333 34577777778888888888765543 34444555666666667777777765 455566666554
Q ss_pred CCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHH
Q 005136 313 KPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNAL 357 (712)
Q Consensus 313 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 357 (712)
.|+...-...+.++.+......+...+....+. .|..+-...
T Consensus 849 D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D---~d~~Vr~~A 890 (897)
T PRK13800 849 DPHLDVRKAAVLALTRWPGDPAARDALTTALTD---SDADVRAYA 890 (897)
T ss_pred CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhC---CCHHHHHHH
Confidence 466666667777777754344566666666553 344444333
No 433
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=48.24 E-value=2.8e+02 Score=27.26 Aligned_cols=58 Identities=9% Similarity=0.095 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHH
Q 005136 336 MHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGG 394 (712)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 394 (712)
+.+++.+++.+ +.+......++..+.+..+.+...+-|+++....+.+...|...+..
T Consensus 51 lsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~ 108 (321)
T PF08424_consen 51 LSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDF 108 (321)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 34444444442 23444455555555555555555566666665555455555554443
No 434
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.05 E-value=74 Score=33.60 Aligned_cols=59 Identities=8% Similarity=0.083 Sum_probs=34.7
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 624 ASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 624 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
+.+.-+|....+.+.|.++++++-+.+|.++-.-.....+....|+-++|+..+...+.
T Consensus 398 R~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 398 RALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 33444455555666666666666666666655555555556666666666666655544
No 435
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=47.92 E-value=4.6e+02 Score=29.70 Aligned_cols=54 Identities=9% Similarity=-0.017 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCCh
Q 005136 551 NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRL 604 (712)
Q Consensus 551 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 604 (712)
|..++..-..-+...|++-.|.+++.++.+..+-.++...+..++..+...|.-
T Consensus 1230 dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~ 1283 (1304)
T KOG1114|consen 1230 DSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWN 1283 (1304)
T ss_pred CchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCch
Confidence 333444444444556677777777777665555566666666666666655543
No 436
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=47.86 E-value=1.8e+02 Score=30.46 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=18.5
Q ss_pred HHHHHHHhcCChHHHHHHhccCC
Q 005136 491 ALTDTYAKSGDIESSRRVFDRMP 513 (712)
Q Consensus 491 ~l~~~~~~~g~~~~A~~~~~~~~ 513 (712)
.|+.-|.+.+++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 46667888888888888888876
No 437
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=46.75 E-value=2.2e+02 Score=26.02 Aligned_cols=99 Identities=12% Similarity=0.103 Sum_probs=55.9
Q ss_pred CCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC---chHHHH--HHHHHhhhcCChHHHHHHHHhC-C--CCCC
Q 005136 548 ITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP---NGRHYT--CVVDMLSRSGRLSEAEDFINSM-P--FEPD 619 (712)
Q Consensus 548 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p---~~~~~~--~l~~~~~~~g~~~~A~~~~~~~-~--~~p~ 619 (712)
+.+...-++.|+--|.-...+.+|-..|..-. ++.| +...+. .-+......|+.++|++.++.+ + +.-+
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~---~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n 98 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKES---GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN 98 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcccc---CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc
Confidence 55666667776665554444444555454332 4444 333332 3456667888888888888887 2 2233
Q ss_pred HHHHHHH--HHH--HhhcCCHHHHHHHHHHHhcc
Q 005136 620 SNAWASL--LSG--CKTYKNEQIAERAVKNLWKL 649 (712)
Q Consensus 620 ~~~~~~l--~~~--~~~~g~~~~a~~~~~~~~~~ 649 (712)
...+..+ ... ..+.|..++|.++++.-+..
T Consensus 99 ~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~ 132 (228)
T KOG2659|consen 99 RELFFHLQQLHLIELIREGKTEEALEFAQTKLAP 132 (228)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccc
Confidence 2222222 222 46778888888877765543
No 438
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.55 E-value=3.5e+02 Score=27.91 Aligned_cols=380 Identities=10% Similarity=0.052 Sum_probs=0.0
Q ss_pred HHHHHHhcC--ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh---ccCChhhHHHHHHHHHHcCCCCcHH------HHH
Q 005136 287 MIARYNQSG--YPEEAFRLFRQMTRYSFKPNTSCFSIVLSALA---SLKALRSGMHVHAHVLKIGIEKDVF------ISN 355 (712)
Q Consensus 287 l~~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~------~~~ 355 (712)
+...+...| +..++++.++......++.-...-+.+=-+-. -..+++.|..-++......-....+ .+.
T Consensus 13 lAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~S 92 (629)
T KOG2300|consen 13 LAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAAS 92 (629)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHH
Q ss_pred HHHHHHHhcC-ChHHHHHHHHhhhcCCC--C--ceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcC
Q 005136 356 ALIDLYSKCG-ETKDGRLVFDSIVEKDV--A--HVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHK 430 (712)
Q Consensus 356 ~l~~~~~~~g-~~~~A~~~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 430 (712)
.|.+.|.... .+..+...+.+..+... | .-.....+++...-..++..|.+++.--...-........+.
T Consensus 93 lLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr~----- 167 (629)
T KOG2300|consen 93 LLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLRM----- 167 (629)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHHH-----
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhc
Q 005136 431 QFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFD 510 (712)
Q Consensus 431 ~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 510 (712)
.-++....-.-..||......++..|..--+--.....-.++.+--+ ...-+..|.-.|+...+...++
T Consensus 168 -----~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFy------l~lql~yy~~~gq~rt~k~~lk 236 (629)
T KOG2300|consen 168 -----LFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFY------LVLQLSYYLLPGQVRTVKPALK 236 (629)
T ss_pred -----HHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHH------HHHHHHHHhcccchhhhHHHHH
Q ss_pred cCCCC--------------------------------CcchHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCCH----
Q 005136 511 RMPDK--------------------------------NEISWTVMVRGLAESGYAKESINLFEEMEKT--SITPNE---- 552 (712)
Q Consensus 511 ~~~~~--------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~p~~---- 552 (712)
++.+. +..+|......-...|-+++|.++-++++.. .++--.
T Consensus 237 QLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~sr 316 (629)
T KOG2300|consen 237 QLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSR 316 (629)
T ss_pred HHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhH
Q ss_pred -------HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCc--------hHHHHHHHHHhhhcCChHHHHHHHHhC---
Q 005136 553 -------LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPN--------GRHYTCVVDMLSRSGRLSEAEDFINSM--- 614 (712)
Q Consensus 553 -------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~--- 614 (712)
.+...++.+-.-.|++.+|++-+..|.+-..-.|. ......++..+...|.++.|..-|...
T Consensus 317 ilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~ 396 (629)
T KOG2300|consen 317 ILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKL 396 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHh
Q ss_pred CCCCCHHHHHHHHHH--HhhcCCHHHHHHHHHHHhccCCC-------CCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 615 PFEPDSNAWASLLSG--CKTYKNEQIAERAVKNLWKLAEE-------HPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 615 ~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~-------~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
....+...+-.+--+ |.+.|+.+...++++.+--.+.. ...+++..|-....+|++.||...+.+-++
T Consensus 397 t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 397 TESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLK 473 (629)
T ss_pred hhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
No 439
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=45.76 E-value=1.5e+02 Score=23.50 Aligned_cols=39 Identities=10% Similarity=0.099 Sum_probs=20.8
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHH
Q 005136 639 AERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVR 677 (712)
Q Consensus 639 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~ 677 (712)
+.+.+.+...+.|+.+..++.|+.-+...--|+++..--
T Consensus 63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~ka 101 (111)
T PF04781_consen 63 SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKA 101 (111)
T ss_pred hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 345566666666766555555555444444444444433
No 440
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=45.62 E-value=1.6e+02 Score=29.89 Aligned_cols=43 Identities=21% Similarity=0.162 Sum_probs=29.7
Q ss_pred HHhCCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 005136 611 INSMPFEPD--SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH 653 (712)
Q Consensus 611 ~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 653 (712)
|.....+|. ..+++..+..+.+.+++..|..+.++++++.|..
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 334455665 3445677777899999999999999999998864
No 441
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=45.57 E-value=2.1e+02 Score=27.61 Aligned_cols=132 Identities=10% Similarity=-0.044 Sum_probs=65.3
Q ss_pred CCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC-------CCCCCH
Q 005136 548 ITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM-------PFEPDS 620 (712)
Q Consensus 548 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~ 620 (712)
+..|...++.+..+ +....++--+..+...+..|-.--...+...+..|++-|+.+.|.+.+.+. +.+-|.
T Consensus 66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV 143 (393)
T KOG0687|consen 66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV 143 (393)
T ss_pred eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence 34444444544432 112233333334444322233334566778888999999999999988764 234443
Q ss_pred HHHHHHHHH-HhhcCCHHHHHHHHHHHhccCCC--CCchH-HHHHHHHHhcCCchhHHHHHHHHH
Q 005136 621 NAWASLLSG-CKTYKNEQIAERAVKNLWKLAEE--HPAGY-VLLSNIYASAGRWIDAMNVRKLMT 681 (712)
Q Consensus 621 ~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~p~--~~~~~-~~l~~~~~~~g~~~eA~~~~~~~~ 681 (712)
..+..-++. |..+.=..+.++..+.+++...| ...-+ ..-|.-+..-.++.+|..+|-...
T Consensus 144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 333222222 33333344444444444554333 11111 122333445567888888765443
No 442
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=45.53 E-value=35 Score=32.11 Aligned_cols=49 Identities=14% Similarity=0.227 Sum_probs=27.0
Q ss_pred cccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC
Q 005136 563 SHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM 614 (712)
Q Consensus 563 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 614 (712)
.+.|+.++|..+|+... .+.| ++..+..++......++.-+|-.++-+.
T Consensus 127 ~~~Gk~ekA~~lfeHAl---alaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A 176 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHAL---ALAPTNPQILIEMGQFREMHNEIVEADQCYVKA 176 (472)
T ss_pred HhccchHHHHHHHHHHH---hcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhee
Confidence 34566666666666655 3455 4555555555555555555555555444
No 443
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=45.53 E-value=1.5e+02 Score=23.27 Aligned_cols=49 Identities=20% Similarity=0.160 Sum_probs=20.6
Q ss_pred HHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHccCChHHHHHHhhhCC
Q 005136 95 NANIQWGNLEEAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERNP 145 (712)
Q Consensus 95 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 145 (712)
..+.++|++++|+..=.....||...|..|.. .+.|--+++...+.++.
T Consensus 48 ~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 48 SSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp HHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 34455555555533323333344444443332 34555555555555443
No 444
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=45.47 E-value=78 Score=23.46 Aligned_cols=15 Identities=20% Similarity=0.445 Sum_probs=7.8
Q ss_pred HccCChHHHHHHhhh
Q 005136 129 MKHGRVEESMWYFER 143 (712)
Q Consensus 129 ~~~g~~~~a~~~~~~ 143 (712)
++.|+++-...+++.
T Consensus 5 ~~~~~~~~~~~ll~~ 19 (89)
T PF12796_consen 5 AQNGNLEILKFLLEK 19 (89)
T ss_dssp HHTTTHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHC
Confidence 445555555555553
No 445
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=45.43 E-value=2.8e+02 Score=28.13 Aligned_cols=92 Identities=11% Similarity=0.085 Sum_probs=57.2
Q ss_pred CCcchHHHH---HHHHHhcCChHHHHHHHhhCCCCCh----------------hHHHHHHHHHHccCChHHHHHHhhhCC
Q 005136 85 FDLVVHNCM---INANIQWGNLEEAQRLFDGMPERNE----------------VSWTALISGFMKHGRVEESMWYFERNP 145 (712)
Q Consensus 85 ~~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~ 145 (712)
|+.+....+ +.++.+..++.+-+...+...+++. .+.-.|++.++-.||+..|.+.++.+.
T Consensus 70 ~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~id 149 (404)
T PF10255_consen 70 PDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENID 149 (404)
T ss_pred cCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccC
Confidence 444433333 3455556666665555555433211 233456667778889999888887643
Q ss_pred C-----------CCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 005136 146 F-----------QNVISWTAAICGFVQNGFSFEALKLFLKLL 176 (712)
Q Consensus 146 ~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 176 (712)
- -.+.++..+.-+|.-.+++.+|++.|....
T Consensus 150 l~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 150 LNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred cccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 234567777778888888888888887654
No 446
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=45.12 E-value=45 Score=24.80 Aligned_cols=34 Identities=9% Similarity=0.111 Sum_probs=16.7
Q ss_pred ccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcC
Q 005136 130 KHGRVEESMWYFERNPFQNVISWTAAICGFVQNG 163 (712)
Q Consensus 130 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 163 (712)
...+.++|.++++-++..+..+|..+..++-..|
T Consensus 42 ~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~ 75 (84)
T cd08326 42 AGSRRDQARQLLIDLETRGKQAFPAFLSALRETG 75 (84)
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 3344455555555555555555555555544444
No 447
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=44.70 E-value=1.1e+02 Score=25.74 Aligned_cols=63 Identities=11% Similarity=0.125 Sum_probs=39.2
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccC
Q 005136 170 KLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMG 233 (712)
Q Consensus 170 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 233 (712)
++.+.+.+.|++++..- ..++..+...++.-.|.++++.+.+.+++.+..|--.-+..+...|
T Consensus 7 ~~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 34556666777665543 3566666767666788888888888776665544333344554444
No 448
>PRK09857 putative transposase; Provisional
Probab=44.39 E-value=1.1e+02 Score=29.38 Aligned_cols=64 Identities=13% Similarity=0.177 Sum_probs=48.4
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCccC
Q 005136 625 SLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLRKS 688 (712)
Q Consensus 625 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~ 688 (712)
.++......++.++-.++.+...+..|...+...+++.-+.+.|..++++++..+|+..|+...
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3333334567777677777777766777777788899999999988899999999999887643
No 449
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=44.00 E-value=3.8e+02 Score=27.65 Aligned_cols=107 Identities=9% Similarity=-0.032 Sum_probs=69.0
Q ss_pred HhcccCcHHHHHHHHHhcc--hhcCC--CC---chHHHHHHHHHhhhcCChHHHHHHHHhC----------CCCCC----
Q 005136 561 ACSHSGLVDKGLKYFNSME--PIYNI--KP---NGRHYTCVVDMLSRSGRLSEAEDFINSM----------PFEPD---- 619 (712)
Q Consensus 561 ~~~~~g~~~~a~~~~~~~~--~~~~~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------~~~p~---- 619 (712)
.+...|++.+|.+++-..- ...|. .| ....++.|+-++.+.|.+.-+..+|.+. +.+|.
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 3455688888887775432 11121 22 1223466666677777776666665543 12222
Q ss_pred ------HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 005136 620 ------SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASA 667 (712)
Q Consensus 620 ------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 667 (712)
-...-...-.|...|+.-.|.+.+.++......+|..|..|+.+|...
T Consensus 329 ls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 329 LSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 222233444477899999999999999999989999999999998754
No 450
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=43.66 E-value=3.5e+02 Score=27.14 Aligned_cols=124 Identities=9% Similarity=0.053 Sum_probs=61.4
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHH--------HHHHHhcccCcHHHHHHHHHhcchhcCCCCc----hHHHHHHHH
Q 005136 529 ESGYAKESINLFEEMEKTSITPNELTIL--------SVLFACSHSGLVDKGLKYFNSMEPIYNIKPN----GRHYTCVVD 596 (712)
Q Consensus 529 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~--------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~ 596 (712)
..+++.+|.++-+.....-..-|-.++. -+-.++...|+...-..++........+..| ....++|.+
T Consensus 138 d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr 217 (493)
T KOG2581|consen 138 DQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLR 217 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHH
Confidence 3456666666665544432222333322 2222334455554444444443322223322 334556666
Q ss_pred HhhhcCChHHHHHHHHhCC--CCCCHHHHHHH----HHHHhhcCCHHHHHHHHHHHhccCCC
Q 005136 597 MLSRSGRLSEAEDFINSMP--FEPDSNAWASL----LSGCKTYKNEQIAERAVKNLWKLAEE 652 (712)
Q Consensus 597 ~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l----~~~~~~~g~~~~a~~~~~~~~~~~p~ 652 (712)
.|...+.++.|..+..+.. ...+..-|... ...-.-++++..|.+.+-.++...|.
T Consensus 218 ~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 218 NYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 6777777777777777663 11111122111 11134566777777777777766664
No 451
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=43.45 E-value=74 Score=23.65 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=18.2
Q ss_pred cCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCCh
Q 005136 398 NGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQF 432 (712)
Q Consensus 398 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 432 (712)
..+.+++.++++.++.+.+.+|..+..++...|..
T Consensus 43 ~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~ 77 (84)
T cd08326 43 GSRRDQARQLLIDLETRGKQAFPAFLSALRETGQT 77 (84)
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCch
Confidence 34455555555555555555555555555444443
No 452
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=43.41 E-value=78 Score=24.07 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=17.0
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhcc
Q 005136 625 SLLSGCKTYKNEQIAERAVKNLWKL 649 (712)
Q Consensus 625 ~l~~~~~~~g~~~~a~~~~~~~~~~ 649 (712)
.+.......|+.++|...+++++++
T Consensus 46 ~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 46 NLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3444466777778887777777765
No 453
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=43.14 E-value=2.7e+02 Score=32.19 Aligned_cols=28 Identities=14% Similarity=0.169 Sum_probs=17.1
Q ss_pred hHHHHHHHHhccc--chHHHHHHHHHHHHh
Q 005136 186 TFSSICKACAEIN--DFRLGLSVFGLIFKA 213 (712)
Q Consensus 186 ~~~~l~~~~~~~~--~~~~a~~~~~~~~~~ 213 (712)
.+..++.++.+.+ +++.|+.....+++.
T Consensus 814 ~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 814 YLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 3445666666655 666666666666554
No 454
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.08 E-value=4.2e+02 Score=27.80 Aligned_cols=68 Identities=19% Similarity=0.217 Sum_probs=53.6
Q ss_pred CCCHHHHHHHHHH--HhhcCCHHHHHHHHHHHhccC---CC----CCchHHHHHHHHHhcCC-chhHHHHHHHHHhCC
Q 005136 617 EPDSNAWASLLSG--CKTYKNEQIAERAVKNLWKLA---EE----HPAGYVLLSNIYASAGR-WIDAMNVRKLMTEKG 684 (712)
Q Consensus 617 ~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~---p~----~~~~~~~l~~~~~~~g~-~~eA~~~~~~~~~~~ 684 (712)
.+|...+..++.+ ....|+.+.|...++..++.. .. -|.+++-|+-.|+..|. ..++..++.+.++-+
T Consensus 444 d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 6677777666666 567889999999998887421 11 36799999999999988 999999999988754
No 455
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=42.06 E-value=94 Score=20.04 Aligned_cols=34 Identities=15% Similarity=0.251 Sum_probs=21.2
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005136 291 YNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLS 324 (712)
Q Consensus 291 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 324 (712)
..+.|-..++..++++|.+.|+..+...|..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3455666666677777777676666666655543
No 456
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=41.23 E-value=51 Score=31.34 Aligned_cols=37 Identities=30% Similarity=0.250 Sum_probs=26.5
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhH
Q 005136 151 SWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTF 187 (712)
Q Consensus 151 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 187 (712)
-|+..|....+.|++++|+.++++..+.|+.--..+|
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 4667778888888888888888888877765443443
No 457
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=40.96 E-value=5.7e+02 Score=28.78 Aligned_cols=222 Identities=14% Similarity=0.102 Sum_probs=119.9
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCC----CHH---HHHHHHHH-HhccCChhhHHHHHHHHHHcC----CCCcHHHHHHH
Q 005136 290 RYNQSGYPEEAFRLFRQMTRYSFKP----NTS---CFSIVLSA-LASLKALRSGMHVHAHVLKIG----IEKDVFISNAL 357 (712)
Q Consensus 290 ~~~~~~~~~~a~~~~~~m~~~~~~p----~~~---~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l 357 (712)
......++.+|..++.+....--.| ... .++.+-.. ....|+++.+.++.+.....- ..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3456788899998888775432222 221 22222222 235688899988888777642 23345566777
Q ss_pred HHHHHhcCChHHHHHHHHhhhcC----CCCceeeHHHHHH--HHhccCChhhH--HHHhhcCC-----CCCc-----ccH
Q 005136 358 IDLYSKCGETKDGRLVFDSIVEK----DVAHVVSWNSMIG--GYGLNGQMEEA--KELFDNMP-----KRND-----VSW 419 (712)
Q Consensus 358 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~l~~--~~~~~~~~~~a--~~~~~~~~-----~~~~-----~~~ 419 (712)
..+..-.|++++|..+..+..+. +......|..+.. .+...|+...+ +..+..+. +... .++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 77888889999999888776654 3333334444433 34555633222 22222221 1122 233
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH----CCCCCCHHHHH--HHHHHHhccCchHHHHHHHHHHHHcCCCCc----hhhH
Q 005136 420 SAIISGYLEHKQFDLVFAVFNEMLL----SGEIPNKSTFS--SVLCASASVASLEKGKDLHGKIIKLGFPYD----VFLG 489 (712)
Q Consensus 420 ~~l~~~~~~~~~~~~a~~~~~~~~~----~g~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~ 489 (712)
..+..++.+ .+.+..-...-.+ ....|-...+. .++......|++++|...+.++......+. -...
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 444444444 3333333332222 22222222233 567778889999999999998886433332 2222
Q ss_pred HHHHH--HHHhcCChHHHHHHhccCCC
Q 005136 490 TALTD--TYAKSGDIESSRRVFDRMPD 514 (712)
Q Consensus 490 ~~l~~--~~~~~g~~~~A~~~~~~~~~ 514 (712)
...+. ....+|+.+.+.....+-..
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~s~~ 687 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLKSGD 687 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHhccC
Confidence 22222 23457888777776666443
No 458
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=40.47 E-value=1.6e+02 Score=22.24 Aligned_cols=50 Identities=16% Similarity=0.070 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC--CchHHHHHHHHHhcCC
Q 005136 620 SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH--PAGYVLLSNIYASAGR 669 (712)
Q Consensus 620 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~ 669 (712)
......+...+...|++++|.+.+-.+++.+|+. ..+-..|+.++.-.|.
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 3444445555556666666666666666555442 3444455555555554
No 459
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.45 E-value=55 Score=35.92 Aligned_cols=44 Identities=25% Similarity=0.323 Sum_probs=21.1
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 005136 600 RSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNL 646 (712)
Q Consensus 600 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 646 (712)
.+|+.+.|++..+++. +..+|..+......+|+.+-|+-.|++.
T Consensus 655 e~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~ 698 (1202)
T KOG0292|consen 655 ECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRT 698 (1202)
T ss_pred hcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 4455555544444433 3444555554444555555555544443
No 460
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=37.82 E-value=44 Score=27.27 Aligned_cols=31 Identities=29% Similarity=0.554 Sum_probs=23.7
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 005136 162 NGFSFEALKLFLKLLESGVKPNEVTFSSICKAC 194 (712)
Q Consensus 162 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 194 (712)
.|.-..|..+|.+|+++|-+||. |+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 46667899999999999998875 45565543
No 461
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=37.61 E-value=1.3e+02 Score=28.17 Aligned_cols=54 Identities=11% Similarity=0.031 Sum_probs=28.5
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhCC--------CCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 005136 590 HYTCVVDMLSRSGRLSEAEDFINSMP--------FEPDSNAWASLLSGCKTYKNEQIAERAV 643 (712)
Q Consensus 590 ~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 643 (712)
....++.-|.+.|++++|.++|+.+. ..+...+...+..++...|+.+......
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 33456666777777777777776651 0122333444444445555555444443
No 462
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=36.98 E-value=1.2e+02 Score=30.52 Aligned_cols=58 Identities=14% Similarity=0.063 Sum_probs=29.4
Q ss_pred HHHHHHhcccCcHHHHHHHHHhcchh-----cCCCC-chHHHHHHHHHhhhcCChHHHHHHHHh
Q 005136 556 LSVLFACSHSGLVDKGLKYFNSMEPI-----YNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINS 613 (712)
Q Consensus 556 ~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 613 (712)
..|++..+-.||+..|+++++.+.-. ..+.+ ...++..++.+|.-.+++.+|.+.|..
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~ 189 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQ 189 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555544210 01122 344555566666666666666666554
No 463
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.44 E-value=1.2e+02 Score=23.18 Aligned_cols=29 Identities=14% Similarity=-0.049 Sum_probs=15.3
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCCchHH
Q 005136 630 CKTYKNEQIAERAVKNLWKLAEEHPAGYV 658 (712)
Q Consensus 630 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 658 (712)
|...|+.+.+.+-|+.-..+.|++....+
T Consensus 82 ys~~G~~e~a~~eFetEKalFPES~~fmD 110 (121)
T COG4259 82 YSNSGKDEQAVREFETEKALFPESGVFMD 110 (121)
T ss_pred HhhcCChHHHHHHHHHhhhhCccchhHHH
Confidence 44555555555555555555555444333
No 464
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=36.39 E-value=39 Score=27.52 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=26.0
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005136 526 GLAESGYAKESINLFEEMEKTSITPNELTILSVLFA 561 (712)
Q Consensus 526 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 561 (712)
.....|.-.+|..+|++|++.|-+||. |+.|+..
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 345567778899999999999999985 4555544
No 465
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=36.22 E-value=63 Score=25.72 Aligned_cols=47 Identities=13% Similarity=0.036 Sum_probs=37.4
Q ss_pred HHHHhhccchhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCChh
Q 005136 27 LLKDITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSL 73 (712)
Q Consensus 27 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 73 (712)
++..+...+....|.++++.+.+.++..+..|....+..+...|-..
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 45555566777889999999999988888888888888888888543
No 466
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=36.12 E-value=4.3e+02 Score=25.98 Aligned_cols=135 Identities=10% Similarity=0.041 Sum_probs=0.0
Q ss_pred HHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHH
Q 005136 492 LTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKG 571 (712)
Q Consensus 492 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 571 (712)
+.+.+++.++.+.+..+-+.+..--.....++..++....=.+...+.+.+..+.. ||......++++.+........
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~--~d~~~~~a~lRAls~~~~~~~~ 249 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA--PDLELLSALLRALSSAPASDLV 249 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHcCCCchhHH
Q ss_pred HHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 005136 572 LKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSMPFEPDSNAWASLLS 628 (712)
Q Consensus 572 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 628 (712)
...++.+..+....-.......-+++.....+.+.+..+++++-..++...++.+..
T Consensus 250 ~~~i~~~L~~~~~~~~e~Li~IAgR~W~~L~d~~~l~~fle~LA~~~~~~lF~qlfa 306 (340)
T PF12069_consen 250 AILIDALLQSPRLCHPEVLIAIAGRCWQWLKDPQLLRLFLERLAQQDDQALFNQLFA 306 (340)
T ss_pred HHHHHHHhcCcccCChHHHHHHHhcCchhcCCHHHHHHHHHHHHcccHHHHHHHHHH
No 467
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=36.08 E-value=6.3e+02 Score=27.83 Aligned_cols=119 Identities=11% Similarity=0.062 Sum_probs=68.7
Q ss_pred HhcccCcHHHHHHHHHhcchhcCCCC--chHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHH--HHHHHHhhcCCH
Q 005136 561 ACSHSGLVDKGLKYFNSMEPIYNIKP--NGRHYTCVVDMLSRSGRLSEAEDFINSMPFEPDSNAWA--SLLSGCKTYKNE 636 (712)
Q Consensus 561 ~~~~~g~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~ 636 (712)
++..-|.-++|..+.+++..+ ..| ...-...++.+|+-.|+..-..+++.-.-..++...-+ .+.-++.-..+.
T Consensus 510 aL~~ygrqe~Ad~lI~el~~d--kdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRD--KDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcC--CchhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEecCh
Confidence 444556666777777777632 233 22223456667777777666666665543344433322 222234555677
Q ss_pred HHHHHHHHHHhccC-CC-CCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 637 QIAERAVKNLWKLA-EE-HPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 637 ~~a~~~~~~~~~~~-p~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
+......+.+-+.. |. ...+-..||.+|.-.|. .+|+.+++.|.+
T Consensus 588 ~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 588 EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 77666666665543 22 23466677777888886 478888887765
No 468
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=36.06 E-value=52 Score=22.72 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=17.7
Q ss_pred hhccchhhhhhhHHHHHHHhCCCCcchhhhHHHHH
Q 005136 31 ITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIM 65 (712)
Q Consensus 31 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 65 (712)
+.+.|++-+|-++++.+-.....+....+..||++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~ 43 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQL 43 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHH
Confidence 34556666666666666554434444445555443
No 469
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.04 E-value=1.2e+02 Score=23.23 Aligned_cols=47 Identities=13% Similarity=0.102 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHhccC-CCCCchHHHHHHHHHhcCCchhHHHHHHHHH
Q 005136 635 NEQIAERAVKNLWKLA-EEHPAGYVLLSNIYASAGRWIDAMNVRKLMT 681 (712)
Q Consensus 635 ~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 681 (712)
+.+.-++.++++-..+ +-.|..+.+|+.+|.+.|+.+.|..-|+.=+
T Consensus 52 Q~~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEK 99 (121)
T COG4259 52 QTAALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEK 99 (121)
T ss_pred HHHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhh
Confidence 3444555666665443 5568899999999999999999999887543
No 470
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=35.75 E-value=1.9e+02 Score=24.27 Aligned_cols=48 Identities=19% Similarity=0.090 Sum_probs=35.1
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccc
Q 005136 151 SWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEIN 198 (712)
Q Consensus 151 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~ 198 (712)
.-..++..+.+.++.-.|.++++++.+.+...+..|....+..+...|
T Consensus 22 qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 22 QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 345677788888888999999999999877766666555555555444
No 471
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=35.40 E-value=3.3e+02 Score=26.59 Aligned_cols=119 Identities=10% Similarity=0.057 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc------cCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHH
Q 005136 533 AKESINLFEEMEKTSITPNELTILSVLFACSH------SGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSE 606 (712)
Q Consensus 533 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~------~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 606 (712)
++++..++.+....+. |........+.++-. .-+|.....+|+-+. .+.|++.+-.+-.-+.....-.+.
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~---~~apSPvV~LNRAVAla~~~Gp~a 347 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALE---QAAPSPVVTLNRAVALAMREGPAA 347 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHH---HhCCCCeEeehHHHHHHHhhhHHh
Confidence 5677778887777654 776666666655431 235666677777665 335544332222333444444666
Q ss_pred HHHHHHhCCCCCCHH---HHHHH-HHHHhhcCCHHHHHHHHHHHhccCCCCCc
Q 005136 607 AEDFINSMPFEPDSN---AWASL-LSGCKTYKNEQIAERAVKNLWKLAEEHPA 655 (712)
Q Consensus 607 A~~~~~~~~~~p~~~---~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 655 (712)
++...+.+...|... .|..+ ...+.+.|..++|...|++++.+.++..+
T Consensus 348 gLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 348 GLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred HHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 777777765444322 22333 33377888899999999988888777443
No 472
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=35.30 E-value=75 Score=30.25 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=28.2
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 005136 418 SWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFS 455 (712)
Q Consensus 418 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~ 455 (712)
-|+..|....+.|++++|+.++++..+.|..--..+|.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 36678888888888888888888888888665555543
No 473
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=35.28 E-value=65 Score=22.22 Aligned_cols=27 Identities=26% Similarity=0.225 Sum_probs=19.7
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHH
Q 005136 151 SWTAAICGFVQNGFSFEALKLFLKLLE 177 (712)
Q Consensus 151 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 177 (712)
-.-.+|.++...|++++|.++++.+.+
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344677888888888888888877764
No 474
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=35.17 E-value=1.2e+02 Score=28.63 Aligned_cols=133 Identities=7% Similarity=-0.026 Sum_probs=69.3
Q ss_pred CCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC-------CCCCCH
Q 005136 548 ITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM-------PFEPDS 620 (712)
Q Consensus 548 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~ 620 (712)
++-|...++.++.- +....++--+-+++..++.|-.--...+..++..|++.++.+.+.+++.+. +.+-|.
T Consensus 77 ikfD~~~~n~l~kk--neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv 154 (412)
T COG5187 77 IKFDRGRMNTLLKK--NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDV 154 (412)
T ss_pred eehhhHHHHHHHHh--hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhh
Confidence 34444555555532 111222222333444433344445678888999999999999999888764 222332
Q ss_pred HH-HHHHHHHHhhcCCHHHHHHHHHHHhccCCC--CCchH-HHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 621 NA-WASLLSGCKTYKNEQIAERAVKNLWKLAEE--HPAGY-VLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 621 ~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~-~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
.. ...+.-.|....=.++..+..+-+++...+ ...-| ...|.-+....++.+|..++-..+.
T Consensus 155 ~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 155 FLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 11 122222243444456666666666665444 11111 1223334455567788877765544
No 475
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=35.02 E-value=4.3e+02 Score=25.59 Aligned_cols=131 Identities=12% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhCCCCC
Q 005136 539 LFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSMPFEP 618 (712)
Q Consensus 539 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 618 (712)
+++-+...++-+........+....+.+..+-+.+++..+. ..-+........-..........++...=+-++-..|
T Consensus 22 LlEFl~~r~iy~~keLle~k~~ll~~TNMiDy~md~~k~l~--~sed~p~a~~ekr~~Vla~lkeLe~ev~piv~~le~P 99 (432)
T KOG2758|consen 22 LLEFLSLRQIYDEKELLEAKLQLLNKTNMIDYVMDTYKNLH--TSEDMPNALVEKRTEVLAELKELEEEVAPIVKVLENP 99 (432)
T ss_pred HHHHhhhhccCCHHHHHHHHHHHHcccchHHHHHHHHhccc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHH
Q 005136 619 DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVR 677 (712)
Q Consensus 619 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~ 677 (712)
+... .....++-..-.+.+++=....|+..++++.+++-.+.+|++..|-.++
T Consensus 100 d~~~------~~~~~k~~~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yL 152 (432)
T KOG2758|consen 100 DLIA------ALRSDKDRVQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYL 152 (432)
T ss_pred HHHH------HHHhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHH
No 476
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=34.99 E-value=4.9e+02 Score=26.31 Aligned_cols=56 Identities=7% Similarity=0.109 Sum_probs=37.3
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHh--ccCchHHHHHHHHHHHHc
Q 005136 424 SGYLEHKQFDLVFAVFNEMLLSGEIPNKS--TFSSVLCASA--SVASLEKGKDLHGKIIKL 480 (712)
Q Consensus 424 ~~~~~~~~~~~a~~~~~~~~~~g~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 480 (712)
..+...+++..|.++|+.+... ++++.. .+..+..+|. ..-++.+|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445778888889999998886 555554 3444444444 345677888888876654
No 477
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=34.94 E-value=1.2e+02 Score=27.11 Aligned_cols=88 Identities=14% Similarity=0.038 Sum_probs=44.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCc-hHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCcccEEEECCEEE
Q 005136 623 WASLLSGCKTYKNEQIAERAVKNLWKLAEEHPA-GYVLLSNIYASAGRWIDAMNVRKLMTEKGLRKSGGCSWVEVRNQVH 701 (712)
Q Consensus 623 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (712)
+..++..|...||++.|.+.+--++...+-|.. .+..=+.++.+.+......++++.|...=.....-..........+
T Consensus 44 L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~~~~~~p 123 (199)
T PF04090_consen 44 LTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYYNRRIIAP 123 (199)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchhhhhcccc
Confidence 345556666677777777777766655433322 3333334455555555544666666542111111111222333345
Q ss_pred EEecCCCCC
Q 005136 702 FFFQKTDHN 710 (712)
Q Consensus 702 ~~~~~~~~~ 710 (712)
.|-+|.+.|
T Consensus 124 vfrsGs~t~ 132 (199)
T PF04090_consen 124 VFRSGSRTH 132 (199)
T ss_pred cccCCCccc
Confidence 566676655
No 478
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=34.84 E-value=2e+02 Score=25.25 Aligned_cols=48 Identities=19% Similarity=0.178 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHhCCCCC--cc-----HHHHHHHHHHccCChHHHHHHHhhcCC
Q 005136 200 FRLGLSVFGLIFKAGFEKH--VS-----VCNSLITLSLKMGEVDLARSVFDRMEK 247 (712)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~--~~-----~~~~li~~~~~~~~~~~a~~~~~~~~~ 247 (712)
.+.|+.+|+.+.+.-..|. .. .-...+..|.+.|.++.|.+++++..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 4556666666655432221 01 112334556677777777777776554
No 479
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=34.76 E-value=3.3e+02 Score=24.15 Aligned_cols=55 Identities=15% Similarity=0.218 Sum_probs=31.9
Q ss_pred HHHHHhccCChhhHHHHHHHHHHcCC--------------CCcHHHHHHHHHHHHhcCChHHHHHHHHh
Q 005136 322 VLSALASLKALRSGMHVHAHVLKIGI--------------EKDVFISNALIDLYSKCGETKDGRLVFDS 376 (712)
Q Consensus 322 ll~~~~~~~~~~~a~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 376 (712)
++..|.+...+.++.++++.+.+..+ .+--.+.|.....+.++|.++.|..++++
T Consensus 138 ~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 138 LMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 33444444555555555555544321 12234566667778888888888888773
No 480
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=34.57 E-value=2.8e+02 Score=23.31 Aligned_cols=47 Identities=23% Similarity=0.282 Sum_probs=22.6
Q ss_pred hhHHHHHHHHhcccc-hHHHHHHHHHHHHhCCCCCccHHHHHHHHHHc
Q 005136 185 VTFSSICKACAEIND-FRLGLSVFGLIFKAGFEKHVSVCNSLITLSLK 231 (712)
Q Consensus 185 ~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 231 (712)
..|..++.+.++... --.+..+++.+.+.+.++++.-|..+|.++.+
T Consensus 80 ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 80 SSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred chHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 345555555544333 22344445555554455555555555555443
No 481
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=34.57 E-value=77 Score=23.93 Aligned_cols=31 Identities=6% Similarity=0.030 Sum_probs=16.4
Q ss_pred cCChHHHHHHhhhCCCCCcccHHHHHHHHHh
Q 005136 131 HGRVEESMWYFERNPFQNVISWTAAICGFVQ 161 (712)
Q Consensus 131 ~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 161 (712)
..+.+++.++++.++..+..+|..+..++-.
T Consensus 47 ~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~ 77 (90)
T cd08332 47 PTSFSQNVALLNLLPKRGPRAFSAFCEALRE 77 (90)
T ss_pred CCcHHHHHHHHHHHHHhChhHHHHHHHHHHh
Confidence 3445555555555555555555555555543
No 482
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=34.56 E-value=2.8e+02 Score=23.31 Aligned_cols=51 Identities=14% Similarity=0.204 Sum_probs=35.0
Q ss_pred CCceeHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 005136 279 RNEVSWSVMIARYNQSGY-PEEAFRLFRQMTRYSFKPNTSCFSIVLSALASL 329 (712)
Q Consensus 279 ~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 329 (712)
.+...|.+++.+..+..- ---+..+|.-|++.+.+++..-|..++.++.+.
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 355567777777755544 344566777777777788888888888777664
No 483
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=34.41 E-value=92 Score=29.16 Aligned_cols=53 Identities=15% Similarity=0.087 Sum_probs=24.7
Q ss_pred HHHHhcccCcHHHHHHHHHhcchhcC----CCCchHHHHHHHHHhhhcCChHHHHHH
Q 005136 558 VLFACSHSGLVDKGLKYFNSMEPIYN----IKPNGRHYTCVVDMLSRSGRLSEAEDF 610 (712)
Q Consensus 558 l~~~~~~~g~~~~a~~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~A~~~ 610 (712)
+..-|.+.|++++|.++|+.+...+. ..+...+...+..++.+.|+.++.+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 33445555555555555555532211 112333444455555555655554443
No 484
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=34.17 E-value=4.9e+02 Score=26.05 Aligned_cols=99 Identities=15% Similarity=0.160 Sum_probs=70.0
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhCCCCC------C--HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCC-------
Q 005136 590 HYTCVVDMLSRSGRLSEAEDFINSMPFEP------D--SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHP------- 654 (712)
Q Consensus 590 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~p------~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------- 654 (712)
.-..|+..+..+|+.++|.+++.+.+.+. . ......-+..|...+|+-.|.-+-+++....-+.+
T Consensus 133 lTk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKl 212 (439)
T KOG1498|consen 133 LTKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKL 212 (439)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHH
Confidence 33457788888999999999988875321 1 11112224457788999999999998876544433
Q ss_pred chHHHHHHHHHhcCCchhHHHHHHHHHhCCCccC
Q 005136 655 AGYVLLSNIYASAGRWIDAMNVRKLMTEKGLRKS 688 (712)
Q Consensus 655 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~ 688 (712)
..|..++....+.+.|=++-+.++..-+.|..+.
T Consensus 213 kyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~ 246 (439)
T KOG1498|consen 213 KYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKE 246 (439)
T ss_pred HHHHHHHHhcccccchhhHHHHHHHHhccccccc
Confidence 3677777777788899999999998877665443
No 485
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.59 E-value=7.4e+02 Score=27.93 Aligned_cols=260 Identities=14% Similarity=0.096 Sum_probs=118.8
Q ss_pred HHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHH
Q 005136 393 GGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKD 472 (712)
Q Consensus 393 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 472 (712)
..|...|++++|.++-..-++.-..++..-...|.+.+++..|.++|-++.+ .|..+.--+....+.+.-..
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl~~~~~~~L~~ 437 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFLEINQERALRT 437 (911)
T ss_pred HHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHHhcCCHHHHHH
Confidence 3455667777776665544221122344445667777788888888877732 23333333334444443233
Q ss_pred HHHHHHHcCCCCchhhHH-----HHHHHHH-hcCChH----HHHHHhccC--------C-----CCCcchHHHHHHHHHH
Q 005136 473 LHGKIIKLGFPYDVFLGT-----ALTDTYA-KSGDIE----SSRRVFDRM--------P-----DKNEISWTVMVRGLAE 529 (712)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~-----~l~~~~~-~~g~~~----~A~~~~~~~--------~-----~~~~~~~~~l~~~~~~ 529 (712)
++.+-.+ +++|...+-. .+++.|. +.++++ ++.+-++.- . ..+.....+....+..
T Consensus 438 ~L~KKL~-~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~ 516 (911)
T KOG2034|consen 438 FLDKKLD-RLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLAS 516 (911)
T ss_pred HHHHHHh-hCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHH
Confidence 3322222 1233332222 2333332 222222 111111110 0 1122223334444555
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHH
Q 005136 530 SGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAED 609 (712)
Q Consensus 530 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 609 (712)
.|+.++...+-.-+.+ |..++.-+...|.+++|++++..-. ++..+....-.+ ....+.+-..
T Consensus 517 ~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~-------~~el~yk~ap~L-i~~~p~~tV~ 579 (911)
T KOG2034|consen 517 HGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQR-------NPELFYKYAPEL-ITHSPKETVS 579 (911)
T ss_pred ccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhcc-------chhhHHHhhhHH-HhcCcHHHHH
Confidence 6666655544433332 5667777778888888888876543 222222222222 1233334444
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhhc---CCHHHHHHHHHHHhcc-CCCCCchHHHHHHHHHhcCCchhHHHHHHH
Q 005136 610 FINSMPFEPDSNAWASLLSGCKTY---KNEQIAERAVKNLWKL-AEEHPAGYVLLSNIYASAGRWIDAMNVRKL 679 (712)
Q Consensus 610 ~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 679 (712)
.+...+..........++..+... .....+..+++-.... .-.+|.+++.+...|...- .+...-.++.
T Consensus 580 ~wm~~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~-~~~ll~~le~ 652 (911)
T KOG2034|consen 580 AWMAQKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHE-RDDLLLYLEI 652 (911)
T ss_pred HHHHccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCC-ccchHHHHHH
Confidence 444443222222233333333332 2445555555555433 3446777777766665544 3444444443
No 486
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=33.34 E-value=59 Score=22.42 Aligned_cols=22 Identities=14% Similarity=0.410 Sum_probs=9.3
Q ss_pred HHHHHhcccCcHHHHHHHHHhc
Q 005136 557 SVLFACSHSGLVDKGLKYFNSM 578 (712)
Q Consensus 557 ~l~~~~~~~g~~~~a~~~~~~~ 578 (712)
.++.++...|++++|.++++++
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3344444444444444444443
No 487
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.73 E-value=7.7e+02 Score=27.83 Aligned_cols=287 Identities=12% Similarity=0.059 Sum_probs=130.5
Q ss_pred HHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHH
Q 005136 227 TLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQ 306 (712)
Q Consensus 227 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 306 (712)
..|...|+++.|.++...-++.-...+..-...+...+++..|.+++.++. ..|..+.--+....+.+ +++.|-.
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~----~~FEEVaLKFl~~~~~~-~L~~~L~ 440 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAETL----SSFEEVALKFLEINQER-ALRTFLD 440 (911)
T ss_pred HHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh----hhHHHHHHHHHhcCCHH-HHHHHHH
Confidence 456777888888877664311111123333445667778888888887773 34555555566666555 4444432
Q ss_pred HHhCCCCCCHHHHHHH-----HHHHh-ccCCh----hhHHHHHHHHHHc---------CCCCcHHHHHHHHHHHHhcCCh
Q 005136 307 MTRYSFKPNTSCFSIV-----LSALA-SLKAL----RSGMHVHAHVLKI---------GIEKDVFISNALIDLYSKCGET 367 (712)
Q Consensus 307 m~~~~~~p~~~~~~~l-----l~~~~-~~~~~----~~a~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~ 367 (712)
=+-..++|...+-..+ +..+. +.++. +.+.+-++.-.+. ....+...+.+....+...|+.
T Consensus 441 KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~~~~~ 520 (911)
T KOG2034|consen 441 KKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLASHGRQ 520 (911)
T ss_pred HHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHccCH
Confidence 2222355544332222 22211 22222 2222222221110 1111222333444455566666
Q ss_pred HHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 005136 368 KDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGE 447 (712)
Q Consensus 368 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~ 447 (712)
+....+-.-+. -|..++.-+.+.+.+++|++++..-..+... ....-.+. ...+......+ ...+-
T Consensus 521 e~ll~fA~l~~--------d~~~vv~~~~q~e~yeeaLevL~~~~~~el~--yk~ap~Li-~~~p~~tV~~w---m~~~d 586 (911)
T KOG2034|consen 521 EELLQFANLIK--------DYEFVVSYWIQQENYEEALEVLLNQRNPELF--YKYAPELI-THSPKETVSAW---MAQKD 586 (911)
T ss_pred HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhccchhhH--HHhhhHHH-hcCcHHHHHHH---HHccc
Confidence 66555443332 3556777778888888888887766433211 11111110 11111111111 12221
Q ss_pred CCCHHHHHHHHHHHhccC---chHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHh--ccCCCCCcchHHH
Q 005136 448 IPNKSTFSSVLCASASVA---SLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVF--DRMPDKNEISWTV 522 (712)
Q Consensus 448 ~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~--~~~~~~~~~~~~~ 522 (712)
.....-...++..+.+.+ ....+..+++.....-...++.+++.++..|++..+-+.-..+- ..+......-...
T Consensus 587 ~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ll~~le~~~~~~~~~~YDl~~ 666 (911)
T KOG2034|consen 587 LDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDLLLYLEIIKFMKSRVHYDLDY 666 (911)
T ss_pred cCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccchHHHHHHHhhccccceecHHH
Confidence 222233333444444432 22334444444444333556777888887777655433322221 1222222223344
Q ss_pred HHHHHHHcCC
Q 005136 523 MVRGLAESGY 532 (712)
Q Consensus 523 l~~~~~~~~~ 532 (712)
.++.|.+.+.
T Consensus 667 alRlc~~~~~ 676 (911)
T KOG2034|consen 667 ALRLCLKFKK 676 (911)
T ss_pred HHHHHHHhCc
Confidence 4555555553
No 488
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=32.64 E-value=4e+02 Score=25.64 Aligned_cols=84 Identities=7% Similarity=0.072 Sum_probs=51.1
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHH----------hcCCHHHHHHHHh
Q 005136 205 SVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFI----------EMGDLGEARRIFD 274 (712)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~----------~~~~~~~a~~~~~ 274 (712)
++++.+.+.++.|.-..+.-+-..+.+.=.+..+..+++.+...... +..|+..|+ -.|++....++++
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-fd~Ll~iCcsmlil~Re~il~~DF~~nmkLLQ 342 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-FDFLLYICCSMLILVRERILEGDFTVNMKLLQ 342 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-hHHHHHHHHHHHHHHHHHHHhcchHHHHHHHh
Confidence 56666666677777777666666666666677777777766642111 444444433 4678888888887
Q ss_pred hCCCCCceeHHHHHH
Q 005136 275 EMPERNEVSWSVMIA 289 (712)
Q Consensus 275 ~~~~~~~~~~~~l~~ 289 (712)
.-+.-|+...-.+..
T Consensus 343 ~yp~tdi~~~l~~A~ 357 (370)
T KOG4567|consen 343 NYPTTDISKMLAVAD 357 (370)
T ss_pred cCCCCCHHHHHHHHH
Confidence 766555544333333
No 489
>PRK12798 chemotaxis protein; Reviewed
Probab=32.35 E-value=5.5e+02 Score=26.07 Aligned_cols=189 Identities=13% Similarity=0.091 Sum_probs=121.7
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHH--HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-cccC
Q 005136 490 TALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGL--AESGYAKESINLFEEMEKTSITPNELTILSVLFAC-SHSG 566 (712)
Q Consensus 490 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g 566 (712)
...+-.....|++.....++..-..++.. ..++.+. .-.|+.+++.+.+..+....+++....+..|+.+- ....
T Consensus 85 ~Aa~iy~lSGGnP~vlr~L~~~d~~~~~d--~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~ 162 (421)
T PRK12798 85 DAALIYLLSGGNPATLRKLLARDKLGNFD--QRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVAT 162 (421)
T ss_pred hHHHhhHhcCCCHHHHHHHHHcCCCChhh--HHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhccc
Confidence 33444445667787777777766544333 2233322 35789999999999887766777777787777764 5567
Q ss_pred cHHHHHHHHHhcchhcCCCCc----hHHHHHHHHHhhhcCChHHHHHH----HHhCCCCCCHHHH-HHHHHHHhhcCCHH
Q 005136 567 LVDKGLKYFNSMEPIYNIKPN----GRHYTCVVDMLSRSGRLSEAEDF----INSMPFEPDSNAW-ASLLSGCKTYKNEQ 637 (712)
Q Consensus 567 ~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~----~~~~~~~p~~~~~-~~l~~~~~~~g~~~ 637 (712)
+..+|+++|+... =..|- ......-+......|+.+++..+ +++....|-..-+ ..+.....+.++-.
T Consensus 163 dP~~Al~~lD~aR---LlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~ 239 (421)
T PRK12798 163 DPATALKLLDQAR---LLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEI 239 (421)
T ss_pred CHHHHHHHHHHHH---HhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccc
Confidence 8999999999876 23452 22333445556788998886655 4455555553333 33344444444444
Q ss_pred HHHHHHHHHhccCCCC-CchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 638 IAERAVKNLWKLAEEH-PAGYVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 638 ~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
.-..+...+-.++|+. ..+|..++..-.-.|+.+-|.-.-++.+.-
T Consensus 240 ~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L 286 (421)
T PRK12798 240 RDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKL 286 (421)
T ss_pred cHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 4444444444556663 578888999999999999888888877664
No 490
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.18 E-value=5.4e+02 Score=25.94 Aligned_cols=90 Identities=13% Similarity=0.048 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHh---------CCCCCcc
Q 005136 152 WTAAICGFVQNGFSFEALKLFLKLLES--GVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKA---------GFEKHVS 220 (712)
Q Consensus 152 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~ 220 (712)
+.-+.+-|...|+++.|++.|.+.+.- ..+-....+..+|..-.-.|+|.....+....... .+++...
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~ 232 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLK 232 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchH
Confidence 344444555555555555555553321 00111223333444444445544444444433322 1233344
Q ss_pred HHHHHHHHHHccCChHHHHHHHh
Q 005136 221 VCNSLITLSLKMGEVDLARSVFD 243 (712)
Q Consensus 221 ~~~~li~~~~~~~~~~~a~~~~~ 243 (712)
.+..+.....+ ++..|.+.|-
T Consensus 233 C~agLa~L~lk--kyk~aa~~fL 253 (466)
T KOG0686|consen 233 CAAGLANLLLK--KYKSAAKYFL 253 (466)
T ss_pred HHHHHHHHHHH--HHHHHHHHHH
Confidence 44444444433 5555554443
No 491
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=32.17 E-value=1.7e+02 Score=23.85 Aligned_cols=38 Identities=13% Similarity=0.089 Sum_probs=29.0
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc
Q 005136 630 CKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASA 667 (712)
Q Consensus 630 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 667 (712)
+...-+.+.|+.+|+++++..|++-.++..++..+...
T Consensus 86 ~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS~ 123 (139)
T PF12583_consen 86 WIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDSP 123 (139)
T ss_dssp HHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCcH
Confidence 44455778999999999999999999998888877654
No 492
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=32.06 E-value=7.3e+02 Score=27.38 Aligned_cols=182 Identities=12% Similarity=0.168 Sum_probs=95.6
Q ss_pred HHHHHHHHHHcCCCCc---hhhHHHHHHHHHhcCChHHHHHHhccCCC-CC---------c-chHHHHHHHHHHcCChHH
Q 005136 470 GKDLHGKIIKLGFPYD---VFLGTALTDTYAKSGDIESSRRVFDRMPD-KN---------E-ISWTVMVRGLAESGYAKE 535 (712)
Q Consensus 470 a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~---------~-~~~~~l~~~~~~~~~~~~ 535 (712)
-..++.+|+..--.|+ ..+...++-.|....+++...++.+.+.. || + ..|...++--.+-|+-+.
T Consensus 182 l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRak 261 (1226)
T KOG4279|consen 182 LNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAK 261 (1226)
T ss_pred HHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHH
Confidence 3445555655433333 33444455556666666666666665542 21 1 112222232334567777
Q ss_pred HHHHHHHHHHcC--CCCCHHH-----HHHHH--HHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCC-hH
Q 005136 536 SINLFEEMEKTS--ITPNELT-----ILSVL--FACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGR-LS 605 (712)
Q Consensus 536 A~~~~~~~~~~~--~~p~~~~-----~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~ 605 (712)
|+.+.-.+.+.. +.||... |.-+. ..|...+..+.|.+.|++.. ...|+..+--.++-.+...|+ ++
T Consensus 262 AL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~Fe 338 (1226)
T KOG4279|consen 262 ALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEHFE 338 (1226)
T ss_pred HHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhhcc
Confidence 877776666542 4566532 22221 23445667788888888775 557765544444444444443 22
Q ss_pred HHHHH------HHhC-CCCCCH----HHH--HHHHHHHhhcCCHHHHHHHHHHHhccCCCCC
Q 005136 606 EAEDF------INSM-PFEPDS----NAW--ASLLSGCKTYKNEQIAERAVKNLWKLAEEHP 654 (712)
Q Consensus 606 ~A~~~------~~~~-~~~p~~----~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 654 (712)
.-.++ +..+ +.+... ..| ...+.+-.-.+|+.+|.+..+++++++|...
T Consensus 339 ns~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 339 NSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred chHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCcee
Confidence 22221 1111 112221 111 2233444567899999999999999998743
No 493
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=31.75 E-value=2.2e+02 Score=21.26 Aligned_cols=42 Identities=17% Similarity=0.105 Sum_probs=28.5
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcC
Q 005136 205 SVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRME 246 (712)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 246 (712)
++|+.....|+..|+.+|..++..+.-.=-.+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 667777777777777777777776665555666666666553
No 494
>PHA02875 ankyrin repeat protein; Provisional
Probab=31.66 E-value=5.8e+02 Score=26.08 Aligned_cols=15 Identities=7% Similarity=-0.347 Sum_probs=7.7
Q ss_pred cCCChhHhHHHHhhc
Q 005136 68 GSRKSLEANEIVKDL 82 (712)
Q Consensus 68 ~~~~~~~a~~~~~~~ 82 (712)
..|+.+-+..+++.-
T Consensus 11 ~~g~~~iv~~Ll~~g 25 (413)
T PHA02875 11 LFGELDIARRLLDIG 25 (413)
T ss_pred HhCCHHHHHHHHHCC
Confidence 445555555555543
No 495
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=31.65 E-value=5e+02 Score=25.33 Aligned_cols=169 Identities=14% Similarity=0.013 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhCCC----CCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHH
Q 005136 297 PEEAFRLFRQMTRYSF----KPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRL 372 (712)
Q Consensus 297 ~~~a~~~~~~m~~~~~----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 372 (712)
.+.|.+.|+.....+. ..++.....++....+.|+.+.-..+++..... .+......++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Q ss_pred HHHhhhcCCCCceeeHHHHHHHHhccCCh--hhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 005136 373 VFDSIVEKDVAHVVSWNSMIGGYGLNGQM--EEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPN 450 (712)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~ 450 (712)
+++.+...+.-...-...++.++...+.. +.+.+.+ ...|+.+.+. ..++
T Consensus 223 ~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~n~~~i~~~-~~~~ 274 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFF---------------------------KENWDAIIKK-FGTN 274 (324)
T ss_dssp HHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHH---------------------------HHCHHHHHCH-C-TT
T ss_pred HHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHH---------------------------HHHHHHHHHH-hcCC
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 005136 451 KSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTY 496 (712)
Q Consensus 451 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 496 (712)
......++..+...-.-++-.+-++...+....+....-..+-+..
T Consensus 275 ~~~~~~~~~~~~~~~~t~~~~~~~~~f~~~~~~~~~~~~r~l~q~~ 320 (324)
T PF11838_consen 275 SSALSRVIKSFAGNFSTEEQLDELEEFFEDKPKPPPGLRRALAQSL 320 (324)
T ss_dssp SHCCHHHHHCCCTT--SHHHHHHHHHHHHHHCTCCCTTTHHCHHHH
T ss_pred ChHHHHHHHHHhccCCCHHHHHHHHHHHhhCcCCChHHHHHHHHHH
No 496
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=31.55 E-value=1.1e+02 Score=29.87 Aligned_cols=62 Identities=15% Similarity=0.116 Sum_probs=0.0
Q ss_pred hhHHHHHhhcCcCCCCCCchh----hHHHHHHHhhccchhhhhhhHHHHHHHhCCCCcchhhhHHHHHH
Q 005136 2 KASLRSLFSINPETSFNSYIE----TCLCLLKDITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMY 66 (712)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 66 (712)
++++.+++++ ..++ |+.. .|-++++.....|.++....+|++++..|.+|-....+.++..+
T Consensus 120 eei~~~L~~l--i~~I-P~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 120 EEILATLSDL--IKNI-PDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred HHHHHHHHHH--HhcC-chHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
No 497
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.48 E-value=9.1e+02 Score=28.35 Aligned_cols=83 Identities=18% Similarity=0.115 Sum_probs=50.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHH
Q 005136 520 WTVMVRGLAESGYAKESINLFEEMEKTSITPNE----LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVV 595 (712)
Q Consensus 520 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 595 (712)
|...++.+-+++-.+.+.++-..+++. +.++. .+++.+.+-....|.+.+|...+-... ...........++
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~np---dserrrdcLRqlv 1061 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNP---DSERRRDCLRQLV 1061 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCC---cHHHHHHHHHHHH
Confidence 556677778888888888887777664 33333 235566666677777777766554332 1111234555666
Q ss_pred HHhhhcCChHH
Q 005136 596 DMLSRSGRLSE 606 (712)
Q Consensus 596 ~~~~~~g~~~~ 606 (712)
-.+..+|.++.
T Consensus 1062 ivLfecg~l~~ 1072 (1480)
T KOG4521|consen 1062 IVLFECGELEA 1072 (1480)
T ss_pred HHHHhccchHH
Confidence 67777776543
No 498
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=30.88 E-value=68 Score=23.19 Aligned_cols=18 Identities=17% Similarity=-0.003 Sum_probs=14.3
Q ss_pred hcCCHHHHHHHHHHHhcc
Q 005136 632 TYKNEQIAERAVKNLWKL 649 (712)
Q Consensus 632 ~~g~~~~a~~~~~~~~~~ 649 (712)
..|++++|..+|..+++.
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 578888888888888763
No 499
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=30.58 E-value=1.9e+02 Score=21.30 Aligned_cols=80 Identities=26% Similarity=0.204 Sum_probs=36.2
Q ss_pred HHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHccCChHHHHHHhhhCCCCCc---ccHHHHHHHHHhcCChhHHHHHHH
Q 005136 97 NIQWGNLEEAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERNPFQNV---ISWTAAICGFVQNGFSFEALKLFL 173 (712)
Q Consensus 97 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~ 173 (712)
.++.|+++-...+++.-.+.+. -+..+...+..|+.+-+..+++....++. ..++.+..+ +..|+ .++++
T Consensus 4 A~~~~~~~~~~~ll~~~~~~~~--~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~----~~~~~ 76 (89)
T PF12796_consen 4 AAQNGNLEILKFLLEKGADINL--GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYA-AENGN----LEIVK 76 (89)
T ss_dssp HHHTTTHHHHHHHHHTTSTTTS--SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHH-HHTTH----HHHHH
T ss_pred HHHcCCHHHHHHHHHCcCCCCC--CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHH-HHcCC----HHHHH
Confidence 3456666666666653332222 11244444566666666666665443322 223333332 33333 33445
Q ss_pred HHHHcCCCCC
Q 005136 174 KLLESGVKPN 183 (712)
Q Consensus 174 ~m~~~g~~p~ 183 (712)
.+.+.|..++
T Consensus 77 ~Ll~~g~~~~ 86 (89)
T PF12796_consen 77 LLLEHGADVN 86 (89)
T ss_dssp HHHHTTT-TT
T ss_pred HHHHcCCCCC
Confidence 5555555444
No 500
>PRK14700 recombination factor protein RarA; Provisional
Probab=30.56 E-value=5e+02 Score=25.04 Aligned_cols=94 Identities=14% Similarity=0.185 Sum_probs=60.2
Q ss_pred CcccHHHHHHHHH---hcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccc-----hHHHHHHHHHHHHhCCCCCc
Q 005136 148 NVISWTAAICGFV---QNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEIND-----FRLGLSVFGLIFKAGFEKHV 219 (712)
Q Consensus 148 ~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~ 219 (712)
+-..+..+|+++. +..+++.|+-.+-+|++.|-.|....-..++.+.-.-|. ...|...++.....|.|.-.
T Consensus 122 ~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~PEa~ 201 (300)
T PRK14700 122 EGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPEGR 201 (300)
T ss_pred CcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCChHHH
Confidence 3444555677774 467899999999999999988877776667766665553 44566666666677765544
Q ss_pred cHHHHHHHHHHccCChHHHHHH
Q 005136 220 SVCNSLITLSLKMGEVDLARSV 241 (712)
Q Consensus 220 ~~~~~li~~~~~~~~~~~a~~~ 241 (712)
......+-.++.+-+...+...
T Consensus 202 i~La~aviyLA~aPKSNs~y~A 223 (300)
T PRK14700 202 LVLAQAAIYLAVAPKSNACYKA 223 (300)
T ss_pred HHHHHHHHHHHcCCCchHHHHH
Confidence 4444444444444444443333
Done!