Query 005136
Match_columns 712
No_of_seqs 663 out of 3997
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 16:28:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005136.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005136hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.5E-39 5.3E-44 352.2 32.8 517 128-665 63-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 9E-38 3.1E-42 338.4 36.2 498 160-686 64-582 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 4.2E-26 1.4E-30 232.2 39.6 373 288-669 6-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 8.3E-26 2.9E-30 230.0 35.7 355 323-685 6-370 (388)
5 4g26_A Pentatricopeptide repea 99.9 1.5E-25 5.2E-30 230.7 20.9 186 283-499 28-223 (501)
6 4g26_A Pentatricopeptide repea 99.9 1.3E-25 4.3E-30 231.3 19.7 215 167-465 8-224 (501)
7 2gw1_A Mitochondrial precursor 99.9 1.9E-23 6.4E-28 221.6 32.6 393 284-686 9-481 (514)
8 2gw1_A Mitochondrial precursor 99.9 5.1E-23 1.7E-27 218.3 32.4 454 151-661 8-490 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 5.5E-22 1.9E-26 206.3 30.4 331 315-685 25-412 (450)
10 3fp2_A TPR repeat-containing p 99.9 8.5E-22 2.9E-26 210.0 31.0 391 280-685 58-493 (537)
11 1xi4_A Clathrin heavy chain; a 99.9 1.2E-18 4E-23 189.3 53.2 353 280-678 984-1340(1630)
12 2y4t_A DNAJ homolog subfamily 99.9 3.1E-21 1.1E-25 200.7 32.2 366 280-673 25-444 (450)
13 3fp2_A TPR repeat-containing p 99.9 5.6E-20 1.9E-24 195.9 36.4 202 455-658 280-500 (537)
14 1xi4_A Clathrin heavy chain; a 99.9 9E-17 3.1E-21 174.8 59.5 379 23-438 987-1377(1630)
15 3ieg_A DNAJ homolog subfamily 99.8 4.2E-19 1.4E-23 178.4 27.8 303 354-664 6-350 (359)
16 3ieg_A DNAJ homolog subfamily 99.8 1.7E-18 5.9E-23 173.8 26.9 296 385-685 3-337 (359)
17 3hym_B Cell division cycle pro 99.8 4.1E-18 1.4E-22 168.9 27.0 288 348-670 19-321 (330)
18 3hym_B Cell division cycle pro 99.8 9E-18 3.1E-22 166.4 25.1 266 414-685 20-301 (330)
19 1fch_A Peroxisomal targeting s 99.8 6.4E-18 2.2E-22 170.4 23.0 258 417-681 65-357 (368)
20 1b89_A Protein (clathrin heavy 99.8 7.4E-17 2.5E-21 157.5 29.1 280 130-438 15-304 (449)
21 2xm6_A Protein corresponding t 99.8 4.6E-16 1.6E-20 162.8 35.9 353 294-667 56-453 (490)
22 1b89_A Protein (clathrin heavy 99.8 6.8E-18 2.3E-22 164.8 18.3 219 68-309 15-235 (449)
23 2xm6_A Protein corresponding t 99.8 1.1E-15 3.8E-20 159.9 36.5 363 300-685 26-434 (490)
24 4g1t_A Interferon-induced prot 99.8 1.6E-16 5.3E-21 166.2 29.0 385 282-694 52-470 (472)
25 3mkr_A Coatomer subunit epsilo 99.8 1.2E-16 4.1E-21 153.7 24.9 240 422-676 40-287 (291)
26 2ooe_A Cleavage stimulation fa 99.8 3.1E-15 1.1E-19 158.2 36.0 409 249-685 12-494 (530)
27 4eqf_A PEX5-related protein; a 99.7 9E-17 3.1E-21 161.6 19.3 257 416-679 65-352 (365)
28 3cv0_A Peroxisome targeting si 99.7 1.5E-16 5.1E-21 157.4 20.0 259 418-682 23-314 (327)
29 3mkr_A Coatomer subunit epsilo 99.7 1.5E-16 5E-21 153.0 18.9 248 423-685 6-266 (291)
30 2ooe_A Cleavage stimulation fa 99.7 9.9E-15 3.4E-19 154.4 33.2 368 17-411 9-451 (530)
31 4eqf_A PEX5-related protein; a 99.7 4.5E-16 1.5E-20 156.5 19.8 231 451-684 65-311 (365)
32 1fch_A Peroxisomal targeting s 99.7 3.2E-16 1.1E-20 157.9 18.8 119 262-382 37-163 (368)
33 4g1t_A Interferon-induced prot 99.7 1.4E-14 4.8E-19 151.3 29.4 390 218-661 50-471 (472)
34 2pl2_A Hypothetical conserved 99.7 1.6E-15 5.4E-20 139.3 16.3 193 483-680 2-211 (217)
35 3cv0_A Peroxisome targeting si 99.7 1.6E-15 5.3E-20 150.0 16.5 271 354-652 24-318 (327)
36 3uq3_A Heat shock protein STI1 99.6 6.1E-15 2.1E-19 140.1 19.5 224 418-684 7-237 (258)
37 3uq3_A Heat shock protein STI1 99.6 2.2E-14 7.6E-19 136.1 17.5 234 385-663 5-256 (258)
38 3spa_A Mtrpol, DNA-directed RN 99.6 7.1E-16 2.4E-20 162.7 7.3 143 118-264 127-286 (1134)
39 3u4t_A TPR repeat-containing p 99.6 3.2E-14 1.1E-18 136.3 18.1 242 419-666 6-267 (272)
40 1xnf_A Lipoprotein NLPI; TPR, 99.6 5.2E-14 1.8E-18 135.0 18.0 240 429-677 18-269 (275)
41 3e4b_A ALGK; tetratricopeptide 99.6 1.2E-13 4E-18 142.0 20.9 344 322-686 9-390 (452)
42 3e4b_A ALGK; tetratricopeptide 99.6 2.6E-13 8.8E-18 139.5 22.3 336 94-446 10-388 (452)
43 3u4t_A TPR repeat-containing p 99.6 3.1E-13 1.1E-17 129.4 21.1 229 453-687 5-254 (272)
44 1ouv_A Conserved hypothetical 99.6 9.2E-13 3.1E-17 126.0 24.4 226 415-686 5-254 (273)
45 2ho1_A Type 4 fimbrial biogene 99.6 3E-13 1E-17 127.8 20.6 198 486-685 37-240 (252)
46 3spa_A Mtrpol, DNA-directed RN 99.5 2.7E-15 9.2E-20 158.4 5.5 144 252-399 129-286 (1134)
47 2h6f_A Protein farnesyltransfe 99.5 3.3E-13 1.1E-17 134.0 19.9 245 416-667 97-366 (382)
48 3vtx_A MAMA; tetratricopeptide 99.5 2.6E-13 9E-18 121.0 17.2 165 516-685 4-172 (184)
49 2h6f_A Protein farnesyltransfe 99.5 1.2E-13 4.2E-18 137.0 16.1 226 452-684 98-349 (382)
50 2vq2_A PILW, putative fimbrial 99.5 6.4E-13 2.2E-17 123.0 19.9 198 486-685 8-213 (225)
51 2q7f_A YRRB protein; TPR, prot 99.5 1.7E-13 5.9E-18 128.6 15.7 198 485-686 22-225 (243)
52 2pl2_A Hypothetical conserved 99.5 9.9E-13 3.4E-17 120.5 18.4 191 415-612 4-209 (217)
53 2q7f_A YRRB protein; TPR, prot 99.5 3.4E-13 1.2E-17 126.6 15.2 213 416-668 23-241 (243)
54 2ho1_A Type 4 fimbrial biogene 99.5 3.5E-12 1.2E-16 120.4 21.9 208 416-659 37-248 (252)
55 4abn_A Tetratricopeptide repea 99.5 1.2E-13 3.9E-18 143.0 12.6 191 484-679 100-317 (474)
56 1ouv_A Conserved hypothetical 99.5 5.2E-12 1.8E-16 120.8 22.8 226 384-653 5-255 (273)
57 4a1s_A PINS, partner of inscut 99.5 1.6E-13 5.3E-18 140.4 12.7 263 420-683 52-372 (411)
58 1xnf_A Lipoprotein NLPI; TPR, 99.5 4.9E-13 1.7E-17 128.2 14.6 220 461-685 15-246 (275)
59 3sf4_A G-protein-signaling mod 99.5 5E-13 1.7E-17 136.4 15.3 289 387-675 11-368 (406)
60 2vq2_A PILW, putative fimbrial 99.5 5.5E-12 1.9E-16 116.6 20.8 199 458-660 15-222 (225)
61 3sf4_A G-protein-signaling mod 99.5 4.7E-13 1.6E-17 136.6 14.7 199 416-614 87-333 (406)
62 3ro2_A PINS homolog, G-protein 99.5 1E-12 3.5E-17 130.1 16.2 265 419-684 8-333 (338)
63 4gyw_A UDP-N-acetylglucosamine 99.4 1.3E-12 4.5E-17 140.3 15.3 161 517-682 9-173 (723)
64 4e6h_A MRNA 3'-END-processing 99.4 1.4E-09 4.9E-14 115.3 34.8 227 415-655 342-576 (679)
65 4a1s_A PINS, partner of inscut 99.4 4E-12 1.4E-16 129.9 14.0 269 356-652 53-375 (411)
66 3vtx_A MAMA; tetratricopeptide 99.4 9.6E-12 3.3E-16 110.8 14.6 165 485-654 4-175 (184)
67 4e6h_A MRNA 3'-END-processing 99.4 2.8E-09 9.4E-14 113.1 35.2 210 350-563 342-585 (679)
68 3ro2_A PINS homolog, G-protein 99.4 9.2E-12 3.2E-16 123.2 15.5 134 519-652 185-335 (338)
69 3as5_A MAMA; tetratricopeptide 99.3 9.4E-12 3.2E-16 111.0 13.7 162 520-685 11-175 (186)
70 4i17_A Hypothetical protein; T 99.3 1.6E-11 5.4E-16 113.8 15.4 168 516-686 6-212 (228)
71 3ulq_A Response regulator aspa 99.3 1.5E-11 5.2E-16 124.1 16.0 223 460-683 112-368 (383)
72 3nf1_A KLC 1, kinesin light ch 99.3 1.2E-12 4.2E-17 128.0 7.6 238 416-683 27-307 (311)
73 2ond_A Cleavage stimulation fa 99.3 1.2E-10 4.2E-15 113.1 21.2 216 433-653 33-274 (308)
74 2ond_A Cleavage stimulation fa 99.3 6.3E-10 2.2E-14 108.1 24.2 213 468-686 33-273 (308)
75 1hz4_A MALT regulatory protein 99.3 7.1E-10 2.4E-14 111.4 24.5 154 392-545 21-202 (373)
76 4abn_A Tetratricopeptide repea 99.3 2.5E-11 8.4E-16 125.6 13.5 179 502-685 84-289 (474)
77 3ulq_A Response regulator aspa 99.3 1.4E-10 4.9E-15 116.9 18.8 228 424-651 111-370 (383)
78 4i17_A Hypothetical protein; T 99.3 1.4E-10 4.7E-15 107.4 17.1 205 449-665 5-225 (228)
79 3nf1_A KLC 1, kinesin light ch 99.2 2.9E-11 9.9E-16 118.1 10.1 238 384-652 26-310 (311)
80 3q15_A PSP28, response regulat 99.2 9.3E-10 3.2E-14 110.6 20.2 163 519-682 184-364 (378)
81 3as5_A MAMA; tetratricopeptide 99.2 8.2E-10 2.8E-14 98.2 17.6 166 487-656 9-180 (186)
82 3q15_A PSP28, response regulat 99.2 2.2E-10 7.6E-15 115.2 15.4 304 347-650 6-366 (378)
83 3mv2_B Coatomer subunit epsilo 99.2 3.1E-09 1.1E-13 99.5 21.0 138 393-545 21-164 (310)
84 2yhc_A BAMD, UPF0169 lipoprote 99.2 6.3E-10 2.2E-14 102.4 15.7 64 625-688 152-218 (225)
85 1qqe_A Vesicular transport pro 99.2 6.5E-11 2.2E-15 114.0 9.4 187 496-682 47-268 (292)
86 4ga2_A E3 SUMO-protein ligase 99.1 2.4E-11 8.3E-16 103.5 4.8 136 529-669 9-149 (150)
87 3qky_A Outer membrane assembly 99.1 7E-10 2.4E-14 105.0 15.3 62 624-685 152-226 (261)
88 3edt_B KLC 2, kinesin light ch 99.1 2.9E-10 1E-14 109.1 12.5 217 436-683 28-281 (283)
89 4ga2_A E3 SUMO-protein ligase 99.1 1.1E-10 3.6E-15 99.5 8.2 125 558-685 3-131 (150)
90 3mv2_B Coatomer subunit epsilo 99.1 2.9E-09 9.9E-14 99.7 18.4 175 505-684 85-283 (310)
91 4gyw_A UDP-N-acetylglucosamine 99.1 1.6E-10 5.6E-15 124.1 10.7 163 485-652 8-177 (723)
92 1hz4_A MALT regulatory protein 99.1 6.9E-08 2.4E-12 96.7 28.7 273 155-478 20-320 (373)
93 3gyz_A Chaperone protein IPGC; 99.1 1.2E-10 4E-15 98.5 6.9 103 583-685 30-135 (151)
94 2fo7_A Synthetic consensus TPR 99.1 2.3E-09 7.8E-14 89.4 13.6 127 555-684 4-133 (136)
95 1qqe_A Vesicular transport pro 99.1 7.8E-09 2.7E-13 99.4 18.9 212 423-662 44-282 (292)
96 3qky_A Outer membrane assembly 99.0 2E-09 6.9E-14 101.8 14.2 185 485-674 14-252 (261)
97 3qou_A Protein YBBN; thioredox 99.0 4.6E-09 1.6E-13 100.6 16.4 175 503-682 103-283 (287)
98 3rjv_A Putative SEL1 repeat pr 99.0 7.7E-09 2.6E-13 93.9 17.1 163 515-686 16-200 (212)
99 2pzi_A Probable serine/threoni 99.0 6.4E-10 2.2E-14 120.4 10.8 147 517-669 433-583 (681)
100 2r5s_A Uncharacterized protein 99.0 3.7E-09 1.3E-13 92.9 13.4 159 519-682 8-172 (176)
101 2vsy_A XCC0866; transferase, g 99.0 4.4E-09 1.5E-13 112.0 14.7 158 499-661 2-169 (568)
102 4gco_A Protein STI-1; structur 99.0 3.2E-09 1.1E-13 87.0 10.5 102 584-685 8-112 (126)
103 2vgx_A Chaperone SYCD; alterna 99.0 1.6E-09 5.6E-14 91.7 8.3 102 583-684 15-119 (148)
104 3urz_A Uncharacterized protein 98.9 4E-09 1.4E-13 95.5 10.8 158 489-652 7-189 (208)
105 1hh8_A P67PHOX, NCF-2, neutrop 98.9 2.2E-08 7.6E-13 91.2 15.6 127 520-653 9-154 (213)
106 3edt_B KLC 2, kinesin light ch 98.9 1.1E-08 3.7E-13 98.0 14.0 222 293-545 13-280 (283)
107 4gco_A Protein STI-1; structur 98.9 3.9E-09 1.3E-13 86.5 8.8 114 548-664 8-125 (126)
108 3qou_A Protein YBBN; thioredox 98.9 1.2E-08 4E-13 97.7 13.1 135 550-687 115-252 (287)
109 3urz_A Uncharacterized protein 98.9 1.2E-08 4.1E-13 92.4 12.1 159 522-686 9-189 (208)
110 2fo7_A Synthetic consensus TPR 98.9 5E-08 1.7E-12 81.1 15.1 131 519-653 3-136 (136)
111 2r5s_A Uncharacterized protein 98.9 1.8E-08 6.2E-13 88.5 12.1 131 554-687 8-141 (176)
112 2ifu_A Gamma-SNAP; membrane fu 98.9 2.1E-08 7.1E-13 97.2 13.6 218 429-675 4-253 (307)
113 2xcb_A PCRH, regulatory protei 98.8 1.7E-08 5.8E-13 84.9 10.9 108 574-684 6-116 (142)
114 2ifu_A Gamma-SNAP; membrane fu 98.8 8.3E-09 2.8E-13 100.0 9.9 197 463-681 3-222 (307)
115 2pzi_A Probable serine/threoni 98.8 6.2E-08 2.1E-12 104.9 17.6 166 427-600 402-580 (681)
116 3u3w_A Transcriptional activat 98.8 2.7E-07 9.1E-12 88.7 19.8 160 523-682 81-265 (293)
117 2qfc_A PLCR protein; TPR, HTH, 98.8 6.8E-08 2.3E-12 92.9 14.9 163 520-682 78-265 (293)
118 3dra_A Protein farnesyltransfe 98.8 9.7E-07 3.3E-11 83.7 21.8 148 531-682 124-286 (306)
119 2yhc_A BAMD, UPF0169 lipoprote 98.8 8.8E-08 3E-12 88.0 14.3 64 592-655 151-219 (225)
120 2vsy_A XCC0866; transferase, g 98.8 6.4E-08 2.2E-12 103.0 15.2 151 530-685 2-159 (568)
121 2e2e_A Formate-dependent nitri 98.8 2E-08 7E-13 88.3 8.7 124 528-655 21-150 (177)
122 2uy1_A Cleavage stimulation fa 98.7 5.4E-06 1.9E-10 85.4 27.7 125 417-545 287-412 (493)
123 1a17_A Serine/threonine protei 98.7 9.7E-08 3.3E-12 82.8 12.5 126 554-682 15-145 (166)
124 2kck_A TPR repeat; tetratricop 98.7 5.2E-08 1.8E-12 77.8 9.9 101 587-687 5-110 (112)
125 2lni_A Stress-induced-phosphop 98.7 1E-07 3.5E-12 79.0 11.3 114 553-669 17-133 (133)
126 3upv_A Heat shock protein STI1 98.7 9.1E-08 3.1E-12 78.5 10.6 98 587-684 3-102 (126)
127 4f3v_A ESX-1 secretion system 98.7 1.6E-07 5.5E-12 86.7 12.9 125 558-685 108-239 (282)
128 1hxi_A PEX5, peroxisome target 98.7 4.7E-08 1.6E-12 79.3 8.2 97 589-685 18-116 (121)
129 2uy1_A Cleavage stimulation fa 98.7 6.5E-06 2.2E-10 84.8 25.7 368 235-648 11-412 (493)
130 1hh8_A P67PHOX, NCF-2, neutrop 98.7 4.5E-07 1.5E-11 82.4 14.9 130 489-619 9-153 (213)
131 2vyi_A SGTA protein; chaperone 98.7 2.1E-07 7.3E-12 76.6 11.7 116 553-671 13-131 (131)
132 1p5q_A FKBP52, FK506-binding p 98.6 7.9E-08 2.7E-12 94.2 10.2 160 500-682 127-293 (336)
133 4gcn_A Protein STI-1; structur 98.6 7.5E-08 2.6E-12 78.9 8.4 97 588-684 8-113 (127)
134 1na0_A Designed protein CTPR3; 98.6 3.3E-07 1.1E-11 74.7 12.1 113 553-668 10-125 (125)
135 3rjv_A Putative SEL1 repeat pr 98.6 4.8E-07 1.6E-11 82.0 14.0 111 102-214 68-198 (212)
136 2c2l_A CHIP, carboxy terminus 98.6 3E-08 1E-12 94.5 6.1 189 487-683 5-199 (281)
137 3gyz_A Chaperone protein IPGC; 98.6 9.4E-08 3.2E-12 80.6 8.2 104 548-654 31-138 (151)
138 3sz7_A HSC70 cochaperone (SGT) 98.6 1.7E-07 5.7E-12 81.1 10.0 110 551-663 10-122 (164)
139 3dra_A Protein farnesyltransfe 98.6 1.9E-05 6.3E-10 74.9 24.3 225 432-663 49-302 (306)
140 4f3v_A ESX-1 secretion system 98.6 3E-07 1E-11 84.9 11.2 140 520-664 105-251 (282)
141 3q49_B STIP1 homology and U bo 98.6 3.9E-07 1.3E-11 75.9 11.1 98 587-684 8-107 (137)
142 1elw_A TPR1-domain of HOP; HOP 98.6 4.1E-07 1.4E-11 73.3 10.8 97 588-684 4-102 (118)
143 2lni_A Stress-induced-phosphop 98.6 4.3E-07 1.5E-11 75.1 11.2 99 587-685 15-115 (133)
144 2vgx_A Chaperone SYCD; alterna 98.6 1.1E-07 3.8E-12 80.3 7.4 114 540-658 10-127 (148)
145 2dba_A Smooth muscle cell asso 98.5 6.2E-07 2.1E-11 75.8 11.5 98 587-684 27-129 (148)
146 3gw4_A Uncharacterized protein 98.5 1.1E-06 3.8E-11 79.0 13.5 153 529-682 4-175 (203)
147 1na0_A Designed protein CTPR3; 98.5 6.4E-07 2.2E-11 73.0 10.5 98 588-685 9-108 (125)
148 2fbn_A 70 kDa peptidylprolyl i 98.5 3.7E-07 1.3E-11 81.8 9.7 167 497-684 15-187 (198)
149 3u3w_A Transcriptional activat 98.5 7.8E-06 2.7E-10 78.4 19.7 205 436-649 31-266 (293)
150 3sz7_A HSC70 cochaperone (SGT) 98.5 9.6E-07 3.3E-11 76.2 11.9 97 587-683 10-108 (164)
151 2qfc_A PLCR protein; TPR, HTH, 98.5 1.7E-06 5.7E-11 83.1 14.4 162 488-649 77-266 (293)
152 2e2e_A Formate-dependent nitri 98.5 5.9E-07 2E-11 78.8 10.3 123 562-687 20-148 (177)
153 2hr2_A Hypothetical protein; a 98.5 4.1E-07 1.4E-11 75.5 8.4 94 590-683 13-131 (159)
154 1elw_A TPR1-domain of HOP; HOP 98.5 1.6E-06 5.4E-11 69.7 11.8 109 553-664 5-116 (118)
155 2vyi_A SGTA protein; chaperone 98.5 9.2E-07 3.2E-11 72.7 10.5 99 587-685 11-111 (131)
156 2xev_A YBGF; tetratricopeptide 98.5 4.2E-07 1.4E-11 74.8 8.3 90 594-683 8-105 (129)
157 3upv_A Heat shock protein STI1 98.5 9.1E-07 3.1E-11 72.4 10.1 110 553-665 5-123 (126)
158 2dba_A Smooth muscle cell asso 98.4 2.3E-06 7.9E-11 72.2 12.5 113 551-666 27-145 (148)
159 2xcb_A PCRH, regulatory protei 98.4 7.8E-07 2.7E-11 74.6 9.0 106 553-661 19-127 (142)
160 3rkv_A Putative peptidylprolyl 98.4 5.9E-07 2E-11 77.4 8.3 62 622-683 65-126 (162)
161 2if4_A ATFKBP42; FKBP-like, al 98.4 5.9E-07 2E-11 87.9 8.5 150 519-688 181-333 (338)
162 2fbn_A 70 kDa peptidylprolyl i 98.4 4.1E-07 1.4E-11 81.5 6.3 120 563-685 15-153 (198)
163 3k9i_A BH0479 protein; putativ 98.4 1.9E-07 6.7E-12 75.2 3.6 60 623-682 30-89 (117)
164 1a17_A Serine/threonine protei 98.4 2.4E-06 8E-11 73.8 10.7 98 588-685 13-112 (166)
165 1elr_A TPR2A-domain of HOP; HO 98.3 1.3E-06 4.4E-11 71.8 8.4 107 554-664 6-122 (131)
166 1wao_1 Serine/threonine protei 98.3 1.2E-06 4.2E-11 90.1 9.7 117 559-678 13-134 (477)
167 3q49_B STIP1 homology and U bo 98.3 2.3E-06 7.9E-11 71.1 9.7 112 551-665 8-127 (137)
168 1kt0_A FKBP51, 51 kDa FK506-bi 98.3 2.8E-06 9.7E-11 87.0 11.9 159 501-682 249-414 (457)
169 3gw4_A Uncharacterized protein 98.3 4E-06 1.4E-10 75.2 11.5 156 130-309 4-175 (203)
170 4gcn_A Protein STI-1; structur 98.3 1.2E-06 4E-11 71.6 7.2 94 556-652 12-115 (127)
171 1hxi_A PEX5, peroxisome target 98.3 2E-06 6.7E-11 69.6 8.2 97 555-654 20-119 (121)
172 1ihg_A Cyclophilin 40; ppiase 98.3 2.1E-06 7.2E-11 84.9 9.8 136 519-676 225-363 (370)
173 2c2l_A CHIP, carboxy terminus 98.3 4.4E-06 1.5E-10 79.4 11.4 112 551-665 3-117 (281)
174 3q7a_A Farnesyltransferase alp 98.3 6.1E-05 2.1E-09 72.1 19.1 234 426-682 64-330 (349)
175 1p5q_A FKBP52, FK506-binding p 98.3 2E-06 6.7E-11 84.2 8.8 118 565-685 126-261 (336)
176 3dss_A Geranylgeranyl transfer 98.3 9.9E-05 3.4E-09 70.4 20.1 179 502-684 90-305 (331)
177 2xev_A YBGF; tetratricopeptide 98.2 6.6E-06 2.2E-10 67.4 10.6 104 558-664 8-120 (129)
178 2kck_A TPR repeat; tetratricop 98.2 6.5E-06 2.2E-10 65.3 9.8 99 553-654 7-111 (112)
179 3rkv_A Putative peptidylprolyl 98.2 1.4E-06 4.7E-11 75.1 6.2 81 587-667 62-145 (162)
180 3ro3_A PINS homolog, G-protein 98.2 4.2E-06 1.4E-10 71.8 9.3 93 590-682 51-157 (164)
181 4b4t_Q 26S proteasome regulato 98.2 1.1E-05 3.9E-10 82.4 13.7 163 520-682 58-244 (434)
182 3q7a_A Farnesyltransferase alp 98.2 0.00038 1.3E-08 66.7 22.9 175 388-566 57-256 (349)
183 3k9i_A BH0479 protein; putativ 98.2 1.9E-06 6.3E-11 69.4 5.9 94 565-658 3-99 (117)
184 1elr_A TPR2A-domain of HOP; HO 98.2 3.8E-06 1.3E-10 69.0 7.7 96 589-684 5-109 (131)
185 2l6j_A TPR repeat-containing p 98.2 9.2E-07 3.1E-11 70.3 3.7 92 587-678 3-102 (111)
186 1dce_A Protein (RAB geranylger 98.1 8.4E-05 2.9E-09 77.8 18.1 167 501-672 44-244 (567)
187 2hr2_A Hypothetical protein; a 98.1 2.9E-06 9.8E-11 70.5 5.5 74 588-661 57-143 (159)
188 3ma5_A Tetratricopeptide repea 98.1 1E-05 3.6E-10 62.6 8.5 65 619-683 6-70 (100)
189 3dss_A Geranylgeranyl transfer 98.1 0.00026 8.9E-09 67.5 19.6 192 467-665 90-320 (331)
190 4b4t_Q 26S proteasome regulato 98.1 2.8E-05 9.6E-10 79.4 13.5 159 524-682 11-203 (434)
191 2if4_A ATFKBP42; FKBP-like, al 98.1 4.7E-06 1.6E-10 81.5 7.1 151 487-655 180-334 (338)
192 3bee_A Putative YFRE protein; 98.1 1.6E-05 5.4E-10 60.0 8.2 72 618-690 4-78 (93)
193 1zu2_A Mitochondrial import re 98.0 1.9E-06 6.4E-11 71.4 3.0 97 564-685 14-122 (158)
194 2kat_A Uncharacterized protein 98.0 1.1E-05 3.8E-10 64.5 7.5 63 620-682 19-81 (115)
195 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 1E-05 3.6E-10 82.8 8.5 117 566-685 248-382 (457)
196 1na3_A Designed protein CTPR2; 98.0 2.4E-05 8E-10 59.2 8.4 82 587-668 8-91 (91)
197 1ihg_A Cyclophilin 40; ppiase 98.0 1.3E-05 4.6E-10 79.2 8.7 66 620-685 273-338 (370)
198 3ro3_A PINS homolog, G-protein 98.0 2.9E-05 1E-09 66.4 10.0 133 519-651 11-160 (164)
199 1wao_1 Serine/threonine protei 98.0 2.7E-05 9.3E-10 80.0 10.9 114 526-644 15-134 (477)
200 1klx_A Cysteine rich protein B 97.9 8.4E-05 2.9E-09 61.4 10.8 112 567-686 10-129 (138)
201 3n71_A Histone lysine methyltr 97.9 6.2E-05 2.1E-09 76.7 11.1 122 562-683 319-464 (490)
202 2l6j_A TPR repeat-containing p 97.9 4E-05 1.4E-09 60.6 7.6 68 619-686 3-70 (111)
203 1dce_A Protein (RAB geranylger 97.8 0.00024 8E-09 74.4 14.4 153 529-686 40-224 (567)
204 1zu2_A Mitochondrial import re 97.7 2.6E-05 9E-10 64.5 4.8 103 527-655 12-126 (158)
205 1na3_A Designed protein CTPR2; 97.7 0.00011 3.6E-09 55.5 7.8 66 620-685 9-74 (91)
206 3lvg_A Clathrin heavy chain 1; 97.7 3.5E-07 1.2E-11 88.2 -7.7 263 118-405 54-324 (624)
207 3lvg_A Clathrin heavy chain 1; 97.7 2.3E-05 7.8E-10 76.0 4.5 235 22-272 55-326 (624)
208 1klx_A Cysteine rich protein B 97.6 0.00083 2.9E-08 55.3 11.5 112 530-650 8-127 (138)
209 2kat_A Uncharacterized protein 97.5 0.00022 7.5E-09 56.7 7.4 80 571-653 4-86 (115)
210 2kc7_A BFR218_protein; tetratr 97.5 0.00017 5.8E-09 55.5 6.5 82 593-682 5-89 (99)
211 2kc7_A BFR218_protein; tetratr 97.4 0.0001 3.5E-09 56.8 4.1 58 628-685 8-66 (99)
212 3u64_A Protein TP_0956; tetrat 97.4 0.0026 8.9E-08 58.1 12.9 88 604-691 179-277 (301)
213 3ma5_A Tetratricopeptide repea 97.3 0.00025 8.6E-09 54.6 4.9 66 587-652 6-73 (100)
214 3qww_A SET and MYND domain-con 97.2 0.00049 1.7E-08 68.9 7.5 62 621-682 341-410 (433)
215 3n71_A Histone lysine methyltr 97.2 0.0014 4.8E-08 66.8 10.3 129 326-479 319-463 (490)
216 1wy6_A Hypothetical protein ST 97.2 0.041 1.4E-06 43.0 15.4 142 527-687 17-158 (172)
217 3ly7_A Transcriptional activat 97.1 0.0037 1.3E-07 59.8 11.6 68 617-685 274-341 (372)
218 3ly7_A Transcriptional activat 97.1 0.0067 2.3E-07 58.0 13.2 137 515-654 192-344 (372)
219 3qwp_A SET and MYND domain-con 97.1 0.0016 5.3E-08 65.4 9.5 85 598-682 297-399 (429)
220 1pc2_A Mitochondria fission pr 97.0 0.0013 4.6E-08 53.7 6.6 89 565-655 11-106 (152)
221 3qww_A SET and MYND domain-con 96.9 0.0029 9.9E-08 63.3 9.2 94 565-658 311-425 (433)
222 2v5f_A Prolyl 4-hydroxylase su 96.8 0.0066 2.2E-07 46.8 8.7 75 587-661 4-87 (104)
223 3qwp_A SET and MYND domain-con 96.7 0.0061 2.1E-07 61.1 10.4 99 561-659 296-415 (429)
224 3mkq_A Coatomer beta'-subunit; 96.6 0.058 2E-06 59.8 18.5 151 66-243 609-760 (814)
225 2v5f_A Prolyl 4-hydroxylase su 96.5 0.0075 2.6E-07 46.5 7.1 67 619-685 4-77 (104)
226 3mkq_A Coatomer beta'-subunit; 96.5 0.036 1.2E-06 61.6 15.4 188 425-670 608-799 (814)
227 1pc2_A Mitochondria fission pr 96.4 0.0084 2.9E-07 49.0 7.3 67 618-684 30-101 (152)
228 1qsa_A Protein (soluble lytic 96.4 0.6 2E-05 48.8 22.8 263 353-648 74-347 (618)
229 3bee_A Putative YFRE protein; 96.4 0.012 4.1E-07 44.0 7.5 70 586-655 4-78 (93)
230 4ady_A RPN2, 26S proteasome re 96.3 1.6 5.6E-05 47.4 32.8 24 152-175 148-171 (963)
231 4h7y_A Dual specificity protei 96.2 0.021 7.2E-07 45.8 8.0 51 634-684 74-124 (161)
232 3u64_A Protein TP_0956; tetrat 95.6 0.01 3.5E-07 54.2 4.6 105 568-681 179-296 (301)
233 3mkq_B Coatomer subunit alpha; 95.6 0.19 6.4E-06 42.2 11.8 45 497-543 16-60 (177)
234 1nzn_A CGI-135 protein, fissio 95.5 0.096 3.3E-06 41.0 9.2 90 567-658 16-112 (126)
235 1nzn_A CGI-135 protein, fissio 95.4 0.042 1.4E-06 43.0 6.7 69 617-685 32-105 (126)
236 3mkq_B Coatomer subunit alpha; 95.1 0.36 1.2E-05 40.5 11.9 128 525-680 13-141 (177)
237 1y8m_A FIS1; mitochondria, unk 95.0 0.17 5.8E-06 40.4 9.1 86 567-655 21-112 (144)
238 4ady_A RPN2, 26S proteasome re 94.3 7.4 0.00025 42.5 33.5 51 259-309 383-439 (963)
239 3o48_A Mitochondria fission 1 94.2 0.092 3.1E-06 41.3 5.9 71 585-655 37-113 (134)
240 4h7y_A Dual specificity protei 94.0 0.91 3.1E-05 36.5 11.2 116 278-395 10-138 (161)
241 1qsa_A Protein (soluble lytic 93.6 7.9 0.00027 40.4 37.4 444 68-552 18-485 (618)
242 4gns_B Protein CSD3, chitin bi 93.6 0.21 7.3E-06 53.1 9.3 54 627-680 344-397 (754)
243 3lpz_A GET4 (YOR164C homolog); 93.2 5.7 0.0002 37.3 22.6 145 95-261 20-178 (336)
244 2wpv_A GET4, UPF0363 protein Y 93.1 5.6 0.00019 37.1 21.5 181 95-308 21-215 (312)
245 2wpv_A GET4, UPF0363 protein Y 93.0 5.9 0.0002 37.0 18.6 123 231-375 25-158 (312)
246 3ffl_A Anaphase-promoting comp 92.4 0.54 1.8E-05 38.7 7.9 30 587-616 121-150 (167)
247 4b4t_P 26S proteasome regulato 92.2 10 0.00035 37.9 20.0 34 483-516 290-325 (445)
248 3o48_A Mitochondria fission 1 91.9 0.54 1.8E-05 37.0 7.0 67 617-683 37-107 (134)
249 1y8m_A FIS1; mitochondria, unk 91.8 1.8 6.2E-05 34.5 9.9 69 617-685 36-108 (144)
250 1wy6_A Hypothetical protein ST 91.7 4 0.00014 32.1 14.5 60 422-482 97-156 (172)
251 2ff4_A Probable regulatory pro 91.3 0.39 1.3E-05 47.3 7.3 66 624-689 175-245 (388)
252 3ffl_A Anaphase-promoting comp 90.7 0.94 3.2E-05 37.3 7.7 25 655-679 123-147 (167)
253 3lpz_A GET4 (YOR164C homolog); 89.8 13 0.00046 34.9 21.3 167 490-682 39-215 (336)
254 4b4t_P 26S proteasome regulato 89.6 16 0.00056 36.4 17.5 91 419-509 140-241 (445)
255 2uwj_G Type III export protein 89.5 3.9 0.00013 29.9 9.0 53 125-179 46-98 (115)
256 2p58_C Putative type III secre 89.2 4.3 0.00015 29.7 9.0 52 126-179 48-99 (116)
257 3txn_A 26S proteasome regulato 88.1 7.4 0.00025 37.9 13.2 163 452-614 20-207 (394)
258 4gns_B Protein CSD3, chitin bi 87.8 4.9 0.00017 42.9 12.6 122 154-277 253-398 (754)
259 1v54_E Cytochrome C oxidase po 86.1 4.8 0.00016 29.7 7.8 47 299-345 28-74 (109)
260 4fhn_B Nucleoporin NUP120; pro 86.0 21 0.00072 40.9 17.7 164 92-270 817-991 (1139)
261 1zbp_A Hypothetical protein VP 85.9 1.6 5.5E-05 39.3 6.5 50 562-614 7-57 (273)
262 3txn_A 26S proteasome regulato 85.9 15 0.0005 35.8 13.9 26 488-513 21-46 (394)
263 1v54_E Cytochrome C oxidase po 85.0 5.4 0.00018 29.5 7.6 62 165-227 26-87 (109)
264 1zbp_A Hypothetical protein VP 84.3 7.4 0.00025 35.1 10.0 124 525-655 5-135 (273)
265 3ltm_A Alpha-REP4; protein eng 81.0 27 0.00091 30.3 18.9 111 54-164 31-141 (211)
266 3ltm_A Alpha-REP4; protein eng 80.6 27 0.00094 30.2 19.7 179 76-262 22-200 (211)
267 4fhn_B Nucleoporin NUP120; pro 80.5 37 0.0013 38.9 16.8 21 558-578 848-868 (1139)
268 3ltj_A Alpharep-4; protein eng 80.1 27 0.00094 29.9 19.0 79 55-133 27-105 (201)
269 2y69_E Cytochrome C oxidase su 79.6 10 0.00035 29.7 7.8 58 335-392 72-129 (152)
270 2p58_C Putative type III secre 79.0 17 0.00057 26.7 9.5 50 94-145 47-96 (116)
271 2uwj_G Type III export protein 78.9 17 0.00057 26.7 8.8 52 258-311 47-98 (115)
272 3kea_A K1L; tropism, ANK repea 78.7 37 0.0013 31.2 13.7 141 28-173 35-182 (285)
273 2ff4_A Probable regulatory pro 77.5 12 0.00043 36.5 10.3 73 152-225 174-251 (388)
274 2y69_E Cytochrome C oxidase su 76.8 13 0.00044 29.2 7.6 61 166-227 70-130 (152)
275 1k1a_A B-cell lymphoma 3-encod 76.7 26 0.0009 31.0 11.8 117 27-145 12-140 (241)
276 3ltj_A Alpharep-4; protein eng 73.7 42 0.0014 28.7 20.0 83 83-165 24-106 (201)
277 1oyz_A Hypothetical protein YI 73.5 54 0.0019 29.8 20.2 20 216-235 139-158 (280)
278 4b4t_R RPN7, 26S proteasome re 72.9 8.6 0.00029 38.2 7.8 97 554-650 133-238 (429)
279 1wdy_A 2-5A-dependent ribonucl 72.9 47 0.0016 30.1 12.8 114 123-245 7-128 (285)
280 1wdy_A 2-5A-dependent ribonucl 71.5 59 0.002 29.4 15.1 206 26-243 7-240 (285)
281 4b4t_R RPN7, 26S proteasome re 71.1 12 0.00042 37.1 8.5 96 487-582 132-238 (429)
282 3jxi_A Vanilloid receptor-rela 68.1 16 0.00056 32.9 8.3 55 27-81 8-71 (260)
283 3eu9_A Huntingtin-interacting 64.4 54 0.0019 28.7 10.9 109 31-144 16-132 (240)
284 1n11_A Ankyrin; clathrin, BAND 63.8 1.2E+02 0.0039 29.9 15.0 52 27-82 17-70 (437)
285 3esl_A Checkpoint serine/threo 61.1 60 0.0021 27.7 9.4 50 601-650 92-145 (202)
286 3bqo_A Telomeric repeat-bindin 59.8 55 0.0019 27.7 8.5 48 626-673 123-170 (211)
287 3eiq_C Programmed cell death p 57.9 1.1E+02 0.0038 29.1 11.8 72 419-491 220-293 (358)
288 2etb_A Transient receptor pote 55.5 31 0.0011 30.9 7.7 56 26-82 4-69 (256)
289 3esl_A Checkpoint serine/threo 55.4 99 0.0034 26.4 10.5 53 329-381 92-145 (202)
290 3kea_A K1L; tropism, ANK repea 55.0 86 0.0029 28.6 10.7 51 62-112 34-84 (285)
291 1n11_A Ankyrin; clathrin, BAND 54.9 1.6E+02 0.0055 28.8 13.5 204 62-276 17-235 (437)
292 2r9g_A AAA ATPase, central reg 52.5 1.1E+02 0.0037 26.1 10.0 84 151-235 13-104 (204)
293 2d2s_A Exocyst complex compone 50.0 83 0.0028 27.9 8.9 87 155-244 24-116 (235)
294 3mv2_A Coatomer subunit alpha; 49.8 1.1E+02 0.0038 28.4 9.9 59 611-683 196-256 (325)
295 3eu9_A Huntingtin-interacting 48.9 1.1E+02 0.0039 26.4 10.3 77 66-143 16-98 (240)
296 4gq2_M Nucleoporin NUP120; bet 47.9 1.1E+02 0.0037 34.1 11.6 85 558-648 816-925 (950)
297 2qx5_A Nucleoporin NIC96; mRNA 47.3 2.7E+02 0.0094 29.2 21.8 340 224-618 157-568 (661)
298 4b4t_S RPN3, 26S proteasome re 47.2 37 0.0013 34.2 6.8 67 588-654 231-304 (523)
299 4a1g_A Mitotic checkpoint seri 46.4 1.2E+02 0.004 24.6 9.2 46 639-684 84-131 (152)
300 3ctd_A Putative ATPase, AAA fa 45.0 1.5E+02 0.005 25.5 9.1 77 148-224 31-115 (213)
301 1ya0_A SMG-7 transcript varian 44.7 56 0.0019 32.9 7.8 50 633-682 165-214 (497)
302 2zu6_B Programmed cell death p 42.5 1.2E+02 0.004 28.3 9.1 63 389-451 170-237 (307)
303 2wvi_A Mitotic checkpoint seri 42.2 1.4E+02 0.0049 24.5 8.6 49 602-650 77-126 (164)
304 3jxi_A Vanilloid receptor-rela 41.6 53 0.0018 29.4 6.8 54 157-210 10-72 (260)
305 3eiq_C Programmed cell death p 41.1 2.4E+02 0.0083 26.8 13.8 70 284-354 220-291 (358)
306 2fu4_A Ferric uptake regulatio 40.1 59 0.002 22.8 5.4 56 16-72 12-68 (83)
307 3bge_A Predicted ATPase; struc 39.7 1.3E+02 0.0044 25.5 7.8 63 153-215 8-78 (201)
308 3b7b_A Euchromatic histone-lys 38.8 85 0.0029 27.4 7.7 112 27-144 14-134 (237)
309 2r9g_A AAA ATPase, central reg 38.3 1.9E+02 0.0064 24.7 9.8 49 417-466 12-63 (204)
310 1oyz_A Hypothetical protein YI 36.0 2.4E+02 0.0083 25.3 22.8 18 182-199 140-157 (280)
311 4b4t_S RPN3, 26S proteasome re 35.8 1.1E+02 0.0037 30.9 8.0 61 553-614 232-296 (523)
312 2rfa_A Transient receptor pote 35.1 2.1E+02 0.0072 24.6 9.6 22 194-215 161-182 (232)
313 3ljn_A Hypothetical protein; a 33.3 3.1E+02 0.011 25.8 11.6 83 98-181 28-113 (364)
314 3bge_A Predicted ATPase; struc 33.0 2.3E+02 0.0078 24.1 8.5 61 287-347 10-78 (201)
315 4a1g_A Mitotic checkpoint seri 32.4 2E+02 0.0068 23.3 10.2 47 335-381 84-131 (152)
316 2rfa_A Transient receptor pote 32.1 2.4E+02 0.0083 24.2 9.9 19 63-81 41-59 (232)
317 2w57_A Ferric uptake regulatio 31.4 95 0.0032 25.1 5.9 56 16-72 12-68 (150)
318 2pnn_A Transient receptor pote 31.1 1.4E+02 0.0047 26.9 7.9 56 26-81 15-79 (273)
319 3ctd_A Putative ATPase, AAA fa 30.8 2.6E+02 0.0088 24.0 9.4 68 415-482 31-106 (213)
320 2nsz_A Programmed cell death p 30.6 80 0.0027 24.7 5.1 26 122-147 11-36 (129)
321 1ug3_A EIF4GI, eukaryotic prot 30.2 3.5E+02 0.012 25.4 11.8 24 355-378 15-38 (339)
322 2o03_A Probable zinc uptake re 30.0 57 0.0019 25.6 4.2 46 27-72 16-61 (131)
323 2d2s_A Exocyst complex compone 29.9 1.1E+02 0.0037 27.1 6.4 29 585-613 88-116 (235)
324 2wvi_A Mitotic checkpoint seri 29.7 2.3E+02 0.008 23.2 8.1 55 166-220 77-132 (164)
325 2fe3_A Peroxide operon regulat 29.2 1.4E+02 0.0048 23.8 6.5 60 174-234 12-71 (145)
326 3mwm_A ZUR, putative metal upt 28.9 57 0.002 26.0 4.1 47 26-72 18-64 (139)
327 4gq2_M Nucleoporin NUP120; bet 28.8 3.8E+02 0.013 29.8 12.0 49 185-233 898-950 (950)
328 3ygs_P Procaspase 9; apoptosis 28.8 1.1E+02 0.0038 22.4 5.3 35 400-434 52-86 (97)
329 2crb_A Nuclear receptor bindin 28.5 67 0.0023 23.1 3.7 24 656-679 17-40 (97)
330 3b7b_A Euchromatic histone-lys 28.3 2.9E+02 0.0098 23.8 10.5 17 65-81 17-33 (237)
331 1bd8_A P19INK4D CDK4/6 inhibit 28.2 1.9E+02 0.0064 22.9 7.5 50 28-82 6-58 (156)
332 4g8k_A 2-5A-dependent ribonucl 28.1 3.6E+02 0.012 24.9 19.2 114 25-144 26-148 (337)
333 2nsz_A Programmed cell death p 28.1 2.1E+02 0.0073 22.2 8.9 27 90-116 10-36 (129)
334 3ygs_P Procaspase 9; apoptosis 27.4 61 0.0021 23.8 3.7 33 133-165 52-84 (97)
335 2w57_A Ferric uptake regulatio 27.1 1.8E+02 0.0062 23.4 6.9 62 173-235 6-68 (150)
336 4aez_C MAD3, mitotic spindle c 25.7 2E+02 0.007 25.0 7.1 84 604-687 100-183 (223)
337 2ion_A PDCD4, programmed cell 25.6 1.1E+02 0.0036 24.9 5.1 24 122-145 13-36 (152)
338 3hra_A Ankyrin repeat family p 25.5 2.1E+02 0.0071 23.9 7.7 19 127-145 11-29 (201)
339 2ijq_A Hypothetical protein; s 25.2 58 0.002 26.7 3.5 52 30-81 41-100 (161)
340 3aji_A 26S proteasome non-ATPa 24.7 3.3E+02 0.011 23.3 11.9 14 98-111 14-27 (231)
341 2xig_A Ferric uptake regulatio 24.5 1.9E+02 0.0065 23.2 6.5 61 174-235 17-77 (150)
342 2xig_A Ferric uptake regulatio 24.5 77 0.0026 25.6 4.2 43 28-70 33-75 (150)
343 2zu6_B Programmed cell death p 24.1 4.2E+02 0.014 24.5 9.5 74 419-493 169-244 (307)
344 3d9h_A CDNA FLJ77766, highly s 23.8 3.7E+02 0.013 24.2 9.4 216 20-243 11-243 (285)
345 3t8k_A Uncharacterized protein 23.7 2.2E+02 0.0076 23.7 7.2 90 129-219 14-109 (186)
346 2pnn_A Transient receptor pote 23.2 1.8E+02 0.0063 25.9 7.2 20 160-179 21-40 (273)
347 3mkr_B Coatomer subunit alpha; 23.1 3E+02 0.01 25.6 8.1 59 611-683 187-247 (320)
348 2p1h_A APAF-1, apoptotic prote 22.5 71 0.0024 23.2 3.3 66 106-171 24-89 (94)
349 2b7e_A PRE-mRNA processing pro 22.5 78 0.0027 20.7 2.9 29 166-194 3-31 (59)
350 2o03_A Probable zinc uptake re 22.0 1.5E+02 0.005 23.2 5.3 45 154-198 15-59 (131)
351 3hra_A Ankyrin repeat family p 22.0 3.4E+02 0.012 22.4 9.8 14 129-142 80-93 (201)
352 4ets_A Ferric uptake regulatio 21.4 1.6E+02 0.0055 24.1 5.6 68 167-235 15-85 (162)
353 1te4_A Conserved protein MTH18 21.3 1.3E+02 0.0046 23.2 5.0 7 95-101 64-70 (131)
354 3l6a_A Eukaryotic translation 21.2 4.1E+02 0.014 25.3 9.1 26 122-147 16-41 (364)
355 4ets_A Ferric uptake regulatio 21.0 90 0.0031 25.6 3.9 56 47-103 24-85 (162)
356 2cfu_A SDSA1; SDS-hydrolase, l 20.9 1.2E+02 0.0041 32.0 5.8 66 605-673 437-502 (658)
357 2ion_A PDCD4, programmed cell 20.9 1.6E+02 0.0056 23.8 5.4 66 420-486 13-80 (152)
358 1mzb_A Ferric uptake regulatio 20.4 81 0.0028 24.9 3.5 45 26-70 22-67 (136)
359 2fe3_A Peroxide operon regulat 20.3 2.4E+02 0.0081 22.4 6.3 63 305-368 11-73 (145)
360 3bu8_A Telomeric repeat-bindin 20.2 1.2E+02 0.004 26.1 4.3 47 568-614 88-140 (235)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-39 Score=352.23 Aligned_cols=517 Identities=8% Similarity=-0.037 Sum_probs=352.9
Q ss_pred HHccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHH
Q 005136 128 FMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVF 207 (712)
Q Consensus 128 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 207 (712)
+.+.|.+..+...+...+.+++..|+.++..+.+.|++++|+.+|++|.. ..|+..++..++.+|...|++++|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 34556666777777777777888899999999999999999999999885 4577788888899999999999999988
Q ss_pred HHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHH
Q 005136 208 GLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVM 287 (712)
Q Consensus 208 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 287 (712)
+.+... +++..+++.++.+|.+.|++++|.++|+++...+... ..+...++ +..-...+..+|+.+
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~-------~~~~~~~~~~~~~~l 206 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDE-----KNANKLLM-------QDGGIKLEASMCYLR 206 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------------C-------CCSSCCHHHHHHHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccc-----cccccccc-------cccccchhHHHHHHH
Confidence 877543 5677888888888888888888888888543322100 00000000 000112346678888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHH--HH-HHHHHHcCCCCcHHHHHHHHHHHHhc
Q 005136 288 IARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGM--HV-HAHVLKIGIEKDVFISNALIDLYSKC 364 (712)
Q Consensus 288 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ 364 (712)
+..|.+.|++++|+++|++|.+.+ +.+...+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.
T Consensus 207 ~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (597)
T 2xpi_A 207 GQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHE 285 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCc
Confidence 888888888888888888887743 223444444544443333222211 11 44444444445556677778888888
Q ss_pred CChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCC---CCcccHHHHHHHHHhcCChhHHHHHHHH
Q 005136 365 GETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPK---RNDVSWSAIISGYLEHKQFDLVFAVFNE 441 (712)
Q Consensus 365 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 441 (712)
|++++|..+|+++.+. +++..+|+.++..|.+.|++++|+++|+++.+ .+..+++.++.++.+.|++++|..++++
T Consensus 286 g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (597)
T 2xpi_A 286 DELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISND 364 (597)
T ss_dssp HHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999888776 46788888899999999999999888887752 3566788888888888888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcc
Q 005136 442 MLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEI 518 (712)
Q Consensus 442 ~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~ 518 (712)
+.... +.+..++..++..|.+.|++++|.++++++.+.. +.+..++..++.+|.+.|++++|.++|+++. ..+..
T Consensus 365 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 442 (597)
T 2xpi_A 365 LVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHL 442 (597)
T ss_dssp HHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSH
T ss_pred HHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH
Confidence 87543 4567777788888888888888888888877643 3456677777777777777777777777654 33566
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhc---CCCCc--hHHHHH
Q 005136 519 SWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIY---NIKPN--GRHYTC 593 (712)
Q Consensus 519 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~ 593 (712)
+|..++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..++..
T Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~ 521 (597)
T 2xpi_A 443 PYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWAN 521 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence 77777777777777777777777777642 3355677777777777777777777777775321 44565 567777
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 005136 594 VVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYA 665 (712)
Q Consensus 594 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 665 (712)
++.+|.+.|++++|.+.++++ ...| +..++..+..+|...|++++|.+.++++++++|+++.++..|+.+|.
T Consensus 522 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 522 LGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 777777777777777777776 2233 56677777777777777777777777777777777777777776654
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9e-38 Score=338.39 Aligned_cols=498 Identities=10% Similarity=0.042 Sum_probs=403.2
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHH
Q 005136 160 VQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLAR 239 (712)
Q Consensus 160 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 239 (712)
...|....+...+..+. .++...|+.++..+.+.|++++|..+++.+.... |+..++..++.+|.+.|++++|.
T Consensus 64 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCchHHHHHHHHHHHcCcHHHHH
Confidence 34455555555554432 3578889999999999999999999999998654 56688889999999999999999
Q ss_pred HHHhhcC--CCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 005136 240 SVFDRME--KRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTS 317 (712)
Q Consensus 240 ~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 317 (712)
.+|+++. .++..+++.++.+|.+.|++++|..+|+++...+... ..+...++ ...+.+++..
T Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~-----------~~~~~~~~~~ 201 (597)
T 2xpi_A 138 CLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDE-----KNANKLLM-----------QDGGIKLEAS 201 (597)
T ss_dssp HHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------------C-----------CCSSCCHHHH
T ss_pred HHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccc-----cccccccc-----------cccccchhHH
Confidence 9999984 4788899999999999999999999998654332111 11111111 1235677889
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHH--H-HHhhhcCCC-CceeeHHHHHH
Q 005136 318 CFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRL--V-FDSIVEKDV-AHVVSWNSMIG 393 (712)
Q Consensus 318 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~-~~~~~~~~~-~~~~~~~~l~~ 393 (712)
+++.++.++.+.|++++|.+.|+.+.+.+. .+...+..+...+...+..+.+.. + +..+...++ .....|+.++.
T Consensus 202 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 280 (597)
T 2xpi_A 202 MCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLN 280 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHH
Confidence 999999999999999999999999998752 345666666655544433332221 1 444444443 24556777788
Q ss_pred HHhccCChhhHHHHhhcCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHH
Q 005136 394 GYGLNGQMEEAKELFDNMPK--RNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGK 471 (712)
Q Consensus 394 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 471 (712)
.|.+.|++++|.++|+++.+ ++..+++.++..|.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|.
T Consensus 281 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 359 (597)
T 2xpi_A 281 KTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLY 359 (597)
T ss_dssp TTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHH
T ss_pred HHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999999987 788999999999999999999999999999865 447778999999999999999999
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 005136 472 DLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSI 548 (712)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 548 (712)
.++..+.+.. +.+..++..++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+
T Consensus 360 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 437 (597)
T 2xpi_A 360 LISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF- 437 (597)
T ss_dssp HHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 9999998654 6678899999999999999999999999875 3467799999999999999999999999999852
Q ss_pred CCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-------CCCCC-
Q 005136 549 TPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-------PFEPD- 619 (712)
Q Consensus 549 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~- 619 (712)
+++..++..++.+|.+.|++++|.++|+++.+. .| +..++..++.+|.+.|++++|.++|+++ +..|+
T Consensus 438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~ 514 (597)
T 2xpi_A 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL---FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514 (597)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh
Confidence 346788999999999999999999999999843 44 7889999999999999999999999987 34677
Q ss_pred -HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 005136 620 -SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 620 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 686 (712)
..+|..++.+|...|++++|+..++++++..|+++.++..++.+|.+.|++++|.++++++++..+.
T Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999986543
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=4.2e-26 Score=232.15 Aligned_cols=373 Identities=14% Similarity=0.108 Sum_probs=282.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCh
Q 005136 288 IARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGET 367 (712)
Q Consensus 288 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 367 (712)
...+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...+....+.. +.+...+..+...|...|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 445566777777777777766521 2234455555566667777777777777776653 34566777777778888888
Q ss_pred HHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCC--C-CcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 005136 368 KDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPK--R-NDVSWSAIISGYLEHKQFDLVFAVFNEMLL 444 (712)
Q Consensus 368 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 444 (712)
++|...|+++...+|.+..+|..+..++...|++++|++.++++.+ | +...+..+...+...|++++|...|+++..
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8888888877777666666777777777777888877777776652 3 344566677777777888888888888877
Q ss_pred CCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHH
Q 005136 445 SGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISWT 521 (712)
Q Consensus 445 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~ 521 (712)
.. +.+..++..+...+...|++++|...++++.+.+ +.+...+..+...+...|++++|...+++.. +.+..++.
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 241 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH
Confidence 53 3356777888888888888888888888888764 4456677788888888888888888887664 33566788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhh
Q 005136 522 VMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLS 599 (712)
Q Consensus 522 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 599 (712)
.+...+...|++++|++.++++.+ ..| +..++..+..++.+.|++++|+..|+++.+. .| +..++..++.++.
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL---CPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CcccHHHHHHHHHHHH
Confidence 888888889999999999988888 445 4567888888888889999999998888743 44 6788888888888
Q ss_pred hcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 005136 600 RSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGR 669 (712)
Q Consensus 600 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 669 (712)
+.|++++|...++++ ...|+ ...+..+...+...|++++|...++++++..|+++.++..++.++...|+
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 899999999888887 44454 67778888888889999999999999999899988888888888877763
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=8.3e-26 Score=229.96 Aligned_cols=355 Identities=13% Similarity=0.118 Sum_probs=312.1
Q ss_pred HHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChh
Q 005136 323 LSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQME 402 (712)
Q Consensus 323 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 402 (712)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++.....++.+..+|..+...+.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 345667899999999999988864 3356677788889999999999999999999988888999999999999999999
Q ss_pred hHHHHhhcCC--CC-CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHH
Q 005136 403 EAKELFDNMP--KR-NDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIK 479 (712)
Q Consensus 403 ~a~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 479 (712)
+|++.|+++. .| +..+|..++.++...|++++|...|+++.+.. +.+...+..+...+...|++++|...+.++.+
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999886 34 45579999999999999999999999998864 33445667777888999999999999999988
Q ss_pred cCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHH
Q 005136 480 LGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPN-ELTI 555 (712)
Q Consensus 480 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~ 555 (712)
.. +.+...+..+..++...|++++|...|+++. +.+...|..+...+...|++++|+..+++... +.|+ ..++
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~ 240 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCHHHH
Confidence 64 4567888999999999999999999999886 33456788899999999999999999999988 4564 6788
Q ss_pred HHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHhh
Q 005136 556 LSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-P-FEPDSNAWASLLSGCKT 632 (712)
Q Consensus 556 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~ 632 (712)
..+..++...|++++|++.|+++.+ ..| +..++..++.++.+.|++++|...++++ . .+++...+..+...+..
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 8999999999999999999999983 366 6788999999999999999999999998 3 34568889999999999
Q ss_pred cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 633 YKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 633 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
.|++++|...++++++..|+++.++..++.+|.+.|++++|++.++++++..+
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999988543
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=1.5e-25 Score=230.71 Aligned_cols=186 Identities=12% Similarity=0.142 Sum_probs=165.4
Q ss_pred eHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC---------hhhHHHHHHHHHHcCCCCcHHH
Q 005136 283 SWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKA---------LRSGMHVHAHVLKIGIEKDVFI 353 (712)
Q Consensus 283 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~ 353 (712)
.++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+. ++.|.++|++|...|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 5788899999999999999999999999999999999999999987654 6789999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhhcCCC-CceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCCh
Q 005136 354 SNALIDLYSKCGETKDGRLVFDSIVEKDV-AHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQF 432 (712)
Q Consensus 354 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 432 (712)
|+++|.+|++.|++++|.++|++|.+.+. |+..+|+.+|.+|++.|++++|
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A---------------------------- 159 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKA---------------------------- 159 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH----------------------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHH----------------------------
Confidence 99999999999999999999999998875 6777777777777777777666
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc
Q 005136 433 DLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKS 499 (712)
Q Consensus 433 ~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 499 (712)
.++|++|.+.|+.||..||+.+|.+|++.|+.++|.+++++|.+.+..|+..+++.++..|...
T Consensus 160 ---~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 160 ---YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp ---HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred ---HHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 8888889989999999999999999999999999999999999988999999998888888653
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.93 E-value=1.3e-25 Score=231.29 Aligned_cols=215 Identities=13% Similarity=0.101 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHcCCCCCHh-hHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhc
Q 005136 167 EALKLFLKLLESGVKPNEV-TFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRM 245 (712)
Q Consensus 167 ~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 245 (712)
.+..+.+++.+.+..+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+....+
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 4556667777777765543 57888999999999999999999999999999999999999988876643211
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005136 246 EKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSA 325 (712)
Q Consensus 246 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 325 (712)
.+.+..++|.++|++|...|+.||..||+.+|.+
T Consensus 81 ----------------------------------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~ 114 (501)
T 4g26_A 81 ----------------------------------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARL 114 (501)
T ss_dssp ----------------------------------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred ----------------------------------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 1234568899999999999999999999999999
Q ss_pred HhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCC-CceeeHHHHHHHHhccCChhhH
Q 005136 326 LASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDV-AHVVSWNSMIGGYGLNGQMEEA 404 (712)
Q Consensus 326 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a 404 (712)
|++.|++++|.+++++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.+. |+..+|+.|+.+|++.|+.++|
T Consensus 115 ~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A 194 (501)
T 4g26_A 115 AVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKV 194 (501)
T ss_dssp HHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999998886 6777777777777777777777
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 005136 405 KELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVA 465 (712)
Q Consensus 405 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~ 465 (712)
.++|++|.+.|..|+..||+.++..++..+
T Consensus 195 -------------------------------~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 195 -------------------------------YKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp -------------------------------HHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred -------------------------------HHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 999999999999999999999999887643
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.9e-23 Score=221.57 Aligned_cols=393 Identities=10% Similarity=-0.008 Sum_probs=293.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 005136 284 WSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSK 363 (712)
Q Consensus 284 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 363 (712)
+......+.+.|++++|+..|+++.... |+...+..+..++...|++++|...++.+.+.. +.+...+..+..+|..
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHH
Confidence 4445556666677777777777666633 566666666666667777777777777666654 2345566666677777
Q ss_pred cCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHH-------------------------------------
Q 005136 364 CGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKE------------------------------------- 406 (712)
Q Consensus 364 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~------------------------------------- 406 (712)
.|++++|...|+++...++++......++..+........+.+
T Consensus 86 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred HhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 7777777777777666655433333333333222111111111
Q ss_pred -HhhcCC---------CC-CcccHHHHHHHHHh---cCChhHHHHHHHHHHH-----CCC--------CCCHHHHHHHHH
Q 005136 407 -LFDNMP---------KR-NDVSWSAIISGYLE---HKQFDLVFAVFNEMLL-----SGE--------IPNKSTFSSVLC 459 (712)
Q Consensus 407 -~~~~~~---------~~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~g~--------~p~~~~~~~ll~ 459 (712)
.+.... .| +...+......+.. .|++++|...|+++.. ... +.+...+..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 111111 01 13345555555554 8999999999999988 311 223456777888
Q ss_pred HHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC---CCcchHHHHHHHHHHcCChHHH
Q 005136 460 ASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPD---KNEISWTVMVRGLAESGYAKES 536 (712)
Q Consensus 460 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A 536 (712)
.+...|++++|...+..+.+.... ...+..+..++...|++++|...++.+.+ .+...+..+...+...|++++|
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 899999999999999999987533 88888999999999999999999988753 4566888999999999999999
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC
Q 005136 537 INLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM 614 (712)
Q Consensus 537 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 614 (712)
+..++++.+. .| +...+..+...+...|++++|...++++... .| +...+..++.++.+.|++++|...++++
T Consensus 324 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 324 GKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRK---FPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp HHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---cccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999984 44 4578888999999999999999999998843 45 6788999999999999999999999987
Q ss_pred ----CCCCC----HHHHHHHHHHHhh---cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 615 ----PFEPD----SNAWASLLSGCKT---YKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 615 ----~~~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
+..++ ...+..+...+.. .|++++|...++++++..|+++.++..++.++.+.|++++|.+.++++++.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 22222 3478888888999 999999999999999999999999999999999999999999999999886
Q ss_pred CCc
Q 005136 684 GLR 686 (712)
Q Consensus 684 ~~~ 686 (712)
++.
T Consensus 479 ~~~ 481 (514)
T 2gw1_A 479 ART 481 (514)
T ss_dssp CSS
T ss_pred ccc
Confidence 543
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=5.1e-23 Score=218.27 Aligned_cols=454 Identities=10% Similarity=0.014 Sum_probs=291.4
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHH
Q 005136 151 SWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSL 230 (712)
Q Consensus 151 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 230 (712)
.|......+.+.|++++|+..|+++.+.+ |+..++..+..++...|++++|...++.+++.+ +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 45566677777788888888888877754 677777778888888888888888888777765 445567777777777
Q ss_pred ccCChHHHHHHHhhcCCC---CcchHHHHHHHHHhcCCHHHHHHHHhhCCC----CCceeHHHHHHHHHhcCChhHHHHH
Q 005136 231 KMGEVDLARSVFDRMEKR---DVVSWTVILDVFIEMGDLGEARRIFDEMPE----RNEVSWSVMIARYNQSGYPEEAFRL 303 (712)
Q Consensus 231 ~~~~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~ 303 (712)
..|++++|...|+++.+. +......++..+........+.+.+..+.. ++...+..- .
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------~--------- 149 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPA------K--------- 149 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------------------
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChh------h---------
Confidence 778888887777766531 222222222222222222222111111111 000000000 0
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHh---cCChHHHHHHHHhhhc-
Q 005136 304 FRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSK---CGETKDGRLVFDSIVE- 379 (712)
Q Consensus 304 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~- 379 (712)
.........|+.......+..+........ ...+.+...+......+.. .|++++|...|+++..
T Consensus 150 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 218 (514)
T 2gw1_A 150 -ERKDKQENLPSVTSMASFFGIFKPELTFAN----------YDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARL 218 (514)
T ss_dssp --------CCCCHHHHHHHHTTSCCCCCCSS----------CCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHH
T ss_pred -HHHhhccCCchhHHHHHHHhhcCHHHHHHH----------hcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHH
Confidence 000011122333222222221111111000 0001224444444444444 7788888888877765
Q ss_pred ----C--CCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 005136 380 ----K--DVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKST 453 (712)
Q Consensus 380 ----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~ 453 (712)
. .+.+.... ..+..++..++..+...|++++|...|+++.... |+...
T Consensus 219 ~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~ 272 (514)
T 2gw1_A 219 FEEQLDKNNEDEKLK------------------------EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNS 272 (514)
T ss_dssp HHHHTTTSTTCHHHH------------------------HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHH
T ss_pred hhhhhccCccccccC------------------------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHH
Confidence 3 11110000 0112345555666666666666688888877754 33677
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHc
Q 005136 454 FSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAES 530 (712)
Q Consensus 454 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 530 (712)
+..+...+...|++++|...+..+.+.. +.+...+..+..++...|++++|...++.+. ..+...+..+...+...
T Consensus 273 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 351 (514)
T 2gw1_A 273 YIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRE 351 (514)
T ss_dssp HHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHc
Confidence 7777888888888888888888887653 4456677888888888999999988888764 34566788888899999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCc----hHHHHHHHHHhhh---cCC
Q 005136 531 GYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPN----GRHYTCVVDMLSR---SGR 603 (712)
Q Consensus 531 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~---~g~ 603 (712)
|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.....-.++ ...+..++.++.. .|+
T Consensus 352 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 430 (514)
T 2gw1_A 352 NKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN 430 (514)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTH
T ss_pred CCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCC
Confidence 99999999999998842 334577888889999999999999999988743222222 3488899999999 999
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 005136 604 LSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLS 661 (712)
Q Consensus 604 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 661 (712)
+++|...++++ ...| +...+..+...+...|++++|...+++++++.|+++.++..+.
T Consensus 431 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 431 FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 99999999987 3334 4777888888899999999999999999999999888877664
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=5.5e-22 Score=206.33 Aligned_cols=331 Identities=11% Similarity=0.081 Sum_probs=231.4
Q ss_pred CHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHH
Q 005136 315 NTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGG 394 (712)
Q Consensus 315 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 394 (712)
+...+..+...+.+.|++++|...++.+.+.. +.+...+..+..+|...|++++|...|+++.+.++.+..++..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~---- 99 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQ---- 99 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH----
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH----
Confidence 33444555555555555555555555555432 2234455555555555555555555555555544444444444
Q ss_pred HhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHH------------H
Q 005136 395 YGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNK----STFSSV------------L 458 (712)
Q Consensus 395 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~----~~~~~l------------l 458 (712)
++.+|...|++++|...|+++.... |+. ..+..+ .
T Consensus 100 ---------------------------l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a 150 (450)
T 2y4t_A 100 ---------------------------RGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQA 150 (450)
T ss_dssp ---------------------------HHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555566666665532 322 233222 3
Q ss_pred HHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHH
Q 005136 459 CASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKE 535 (712)
Q Consensus 459 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 535 (712)
..+...|++++|...+..+.+.. +.+...+..+..+|.+.|++++|...|+.+. ..+..+|..++..+...|++++
T Consensus 151 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 229 (450)
T 2y4t_A 151 LNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL 229 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 34677788888888888887653 4566778888888888888888888888775 3467788889999999999999
Q ss_pred HHHHHHHHHHcCCCCCHH-HHHHH------------HHHhcccCcHHHHHHHHHhcchhcCCCCc-----hHHHHHHHHH
Q 005136 536 SINLFEEMEKTSITPNEL-TILSV------------LFACSHSGLVDKGLKYFNSMEPIYNIKPN-----GRHYTCVVDM 597 (712)
Q Consensus 536 A~~~~~~~~~~~~~p~~~-~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~ 597 (712)
|+..++++.+ ..|+.. .+..+ ...|...|++++|+..|+++.+. .|+ ...+..++.+
T Consensus 230 A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~ 304 (450)
T 2y4t_A 230 SLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHC 304 (450)
T ss_dssp HHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHH
Confidence 9999999987 456543 33333 77888999999999999999843 453 4478889999
Q ss_pred hhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHH------------
Q 005136 598 LSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNI------------ 663 (712)
Q Consensus 598 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~------------ 663 (712)
+.+.|++++|...++++ ...| +...+..+..+|...|++++|...+++++++.|+++.++..++.+
T Consensus 305 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 384 (450)
T 2y4t_A 305 FSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDY 384 (450)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhH
Confidence 99999999999999987 4444 588899999999999999999999999999999999999999944
Q ss_pred HHhcC-----CchhHHHHHHH-HHhCCC
Q 005136 664 YASAG-----RWIDAMNVRKL-MTEKGL 685 (712)
Q Consensus 664 ~~~~g-----~~~eA~~~~~~-~~~~~~ 685 (712)
|...| ..+++.+.+++ .++..+
T Consensus 385 y~~lg~~~~~~~~~~~~~y~~~~l~~~p 412 (450)
T 2y4t_A 385 YKILGVKRNAKKQEIIKAYRKLALQWHP 412 (450)
T ss_dssp GGGSCSSTTCCTTHHHHHHHHHHHHSCG
T ss_pred HHHhCCCccCCHHHHHHHHHHHHHHhCC
Confidence 55556 56677888886 444443
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=8.5e-22 Score=210.05 Aligned_cols=391 Identities=12% Similarity=0.046 Sum_probs=253.0
Q ss_pred CceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHH
Q 005136 280 NEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALID 359 (712)
Q Consensus 280 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 359 (712)
++.+|..+...+.+.|++++|++.|+++.+.+ +.+...+..+..++...|++++|...++.+ .. .|+. ....+.
T Consensus 58 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~--~~~~--~~~~~~ 131 (537)
T 3fp2_A 58 EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVL-SL--NGDF--DGASIE 131 (537)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C---------------
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHH-hc--CCCC--ChHHHH
Confidence 44556666666666666666666666665532 234555666666666666666666666422 11 1111 111233
Q ss_pred HHHhcCChHHHHHHHHhhhcCCC---CceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcc---cHHHHHHHHHh-----
Q 005136 360 LYSKCGETKDGRLVFDSIVEKDV---AHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDV---SWSAIISGYLE----- 428 (712)
Q Consensus 360 ~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~----- 428 (712)
.+...+....|...++.+....+ +........+..+....+.+.+...+......+.. ....+...+..
T Consensus 132 ~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 211 (537)
T 3fp2_A 132 PMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGY 211 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhh
Confidence 34444555667777777665432 22223344455555666666666666665554433 33333333322
Q ss_pred ---cCChhHHHHHHHHHHHCCCCCC--------HHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 005136 429 ---HKQFDLVFAVFNEMLLSGEIPN--------KSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYA 497 (712)
Q Consensus 429 ---~~~~~~a~~~~~~~~~~g~~p~--------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 497 (712)
.|++++|..+|+++.+.. |+ ..++..+...+...|++++|...+..+.+.. |+...+..+...+.
T Consensus 212 ~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~ 287 (537)
T 3fp2_A 212 LVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLA 287 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHH
Confidence 246777888888877653 33 2245555566777788888888888887753 33667777778888
Q ss_pred hcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHH
Q 005136 498 KSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLK 573 (712)
Q Consensus 498 ~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 573 (712)
..|++++|...++.+. ..+..+|..+...+...|++++|+..++++.+. .| +...+..+...+...|++++|..
T Consensus 288 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~ 365 (537)
T 3fp2_A 288 DKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEA 365 (537)
T ss_dssp CSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888887765 345667788888888888888888888888874 34 34677778888888888888888
Q ss_pred HHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-C---CCC----CHHHHHHHHHHHhhc----------C
Q 005136 574 YFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-P---FEP----DSNAWASLLSGCKTY----------K 634 (712)
Q Consensus 574 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p----~~~~~~~l~~~~~~~----------g 634 (712)
.++++.+. .| +...+..++.++...|++++|...++++ . ..+ ....+......+... |
T Consensus 366 ~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 442 (537)
T 3fp2_A 366 FFNETKLK---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE 442 (537)
T ss_dssp HHHHHHHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHH
T ss_pred HHHHHHHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHh
Confidence 88888743 45 5667888888888888888888888875 1 111 122233444556666 8
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 635 NEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 635 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
++++|...++++++..|+++.++..++.+|.+.|++++|++.++++++..+
T Consensus 443 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 443 KFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 888888888888888888888888888888888888888888888877543
No 11
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.90 E-value=1.2e-18 Score=189.34 Aligned_cols=353 Identities=10% Similarity=0.087 Sum_probs=276.6
Q ss_pred CceeHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHH
Q 005136 280 NEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSF--KPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNAL 357 (712)
Q Consensus 280 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 357 (712)
++.--...+.+|...|.+.+|++++++..-.+- .-+...-+.++.+..+. +.....++....... + ...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHH
Confidence 333445677888899999999999999874321 12334445566666555 555555555554321 1 3447
Q ss_pred HHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHH
Q 005136 358 IDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFA 437 (712)
Q Consensus 358 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 437 (712)
...+...|.+++|..+|++.... ..+.+.++ ...+++++|.++.+++ .++.+|..+..++...|++++|+.
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~~----~~A~~VLi---e~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDVN----TSAVQVLI---EHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCH----HHHHHHHH---HHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 77889999999999999997411 22223332 2678999999999977 447789999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCc
Q 005136 438 VFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNE 517 (712)
Q Consensus 438 ~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 517 (712)
.|.+. -|...|..++.+|.+.|++++|.+++...++.. +++.+...++.+|++.+++++...+. ..++.
T Consensus 1127 sYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ 1195 (1630)
T 1xi4_A 1127 SYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNN 1195 (1630)
T ss_pred HHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCH
Confidence 99663 577888899999999999999999999988764 34444446999999999999755554 35566
Q ss_pred chHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHH
Q 005136 518 ISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDM 597 (712)
Q Consensus 518 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 597 (712)
..|..+...|...|++++|...|... ..|..+...+.+.|+++.|++.+++.. +..+|..+..+
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~a 1259 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFA 1259 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHH
Confidence 77788999999999999999999985 379999999999999999999999875 66899999999
Q ss_pred hhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc--CCchhHHH
Q 005136 598 LSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASA--GRWIDAMN 675 (712)
Q Consensus 598 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~eA~~ 675 (712)
+...|++..|......+ ..++..+..++..|...|.+++|+.+++.++.++|.+...+..|+.+|.+- ++..|+++
T Consensus 1260 cve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred HhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999999988764 345566678888899999999999999999999999999998888887754 45555555
Q ss_pred HHH
Q 005136 676 VRK 678 (712)
Q Consensus 676 ~~~ 678 (712)
+|.
T Consensus 1338 ~f~ 1340 (1630)
T 1xi4_A 1338 LFW 1340 (1630)
T ss_pred HHH
Confidence 554
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=3.1e-21 Score=200.66 Aligned_cols=366 Identities=9% Similarity=0.027 Sum_probs=258.1
Q ss_pred CceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHH
Q 005136 280 NEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALID 359 (712)
Q Consensus 280 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 359 (712)
++..+..+...+.+.|++++|+.+|+++.+. .+.+...+..+..++...|++++|...++.+.+.+ +.+...+..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 4456778888889999999999999988763 24467888888889999999999999999998875 335778889999
Q ss_pred HHHhcCChHHHHHHHHhhhcCCCCce---eeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHH
Q 005136 360 LYSKCGETKDGRLVFDSIVEKDVAHV---VSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVF 436 (712)
Q Consensus 360 ~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 436 (712)
+|...|++++|...|+++.+.++.+. ..+..++..+...+ +..+...+...|++++|.
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------------------~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-------------------LRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-------------------HHHHHHHHHHcCCHHHHH
Confidence 99999999999999999998887666 67766655532221 122334455566666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC--
Q 005136 437 AVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPD-- 514 (712)
Q Consensus 437 ~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 514 (712)
..|+++.... +.+...+..+...+...|++++|...+.++.+.. +.+..++..+..+|...|++++|...|+++.+
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 164 AFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 6666666542 3355566666666666666666666666666542 34456666666667777777777766666542
Q ss_pred C-CcchHHHH------------HHHHHHcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHhcccCcHHHHHHHHH
Q 005136 515 K-NEISWTVM------------VRGLAESGYAKESINLFEEMEKTSITPN-----ELTILSVLFACSHSGLVDKGLKYFN 576 (712)
Q Consensus 515 ~-~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~ 576 (712)
| +...+..+ +..+...|++++|+..++++.+ +.|+ ...+..+..++.+.|++++|+..++
T Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 2 22233333 7788888999999999999888 4555 3467778888889999999999999
Q ss_pred hcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HhhcC-----CH
Q 005136 577 SMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSG------------CKTYK-----NE 636 (712)
Q Consensus 577 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~------------~~~~g-----~~ 636 (712)
++... .| +...+..++.+|...|++++|...++++ ...|+ ...+..+..+ |...| +.
T Consensus 320 ~a~~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~ 396 (450)
T 2y4t_A 320 EVLQM---EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKK 396 (450)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCT
T ss_pred HHHHh---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCH
Confidence 88733 45 6788889999999999999999999887 55665 4444444422 33334 66
Q ss_pred HHHHHHHHH-HhccCCCCCc----------hHHHHHHHHHhcCCchhH
Q 005136 637 QIAERAVKN-LWKLAEEHPA----------GYVLLSNIYASAGRWIDA 673 (712)
Q Consensus 637 ~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~eA 673 (712)
+++.+.+++ +++..|++.. .+..++.+|...|+.+++
T Consensus 397 ~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 397 QEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp THHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 778888886 7778887432 344555555555555443
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=5.6e-20 Score=195.93 Aligned_cols=202 Identities=13% Similarity=0.058 Sum_probs=103.1
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcC
Q 005136 455 SSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESG 531 (712)
Q Consensus 455 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~ 531 (712)
..+...+...|++++|...+.++.+.. +.+..++..+..++...|++++|...++++. ..+...|..+...+...|
T Consensus 280 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 358 (537)
T 3fp2_A 280 IFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQG 358 (537)
T ss_dssp HHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 333333333344444444333333322 2233334444444444444444444444433 123344555555555666
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhc----CCCCchHHHHHHHHHhhhc------
Q 005136 532 YAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIY----NIKPNGRHYTCVVDMLSRS------ 601 (712)
Q Consensus 532 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~------ 601 (712)
++++|+..++++.+.. +.+...+..+...+...|++++|...|+++.+.. ........+..++.++.+.
T Consensus 359 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 437 (537)
T 3fp2_A 359 KFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPT 437 (537)
T ss_dssp CHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC---
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccch
Confidence 6666666666655531 2223455555556666666666666665544221 1111333345555566666
Q ss_pred ----CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHH
Q 005136 602 ----GRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYV 658 (712)
Q Consensus 602 ----g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 658 (712)
|++++|...+++. ...| +...+..+...+...|++++|...+++++++.|+++....
T Consensus 438 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 438 QLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred hhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 7777777777665 2233 3556666666677777777777777777777777655443
No 14
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.88 E-value=9e-17 Score=174.79 Aligned_cols=379 Identities=16% Similarity=0.170 Sum_probs=294.1
Q ss_pred hHHHHHHHhhccchhhhhhhHHHHHHHhCC--CCcchhhhHHHHHHhcCCChhHhHHHHhhcCCCCcchHHHHHHHHHhc
Q 005136 23 TCLCLLKDITSQNLVIQGRALHGHLIKTGI--HKERYLTTRLLIMYLGSRKSLEANEIVKDLNGFDLVVHNCMINANIQW 100 (712)
Q Consensus 23 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 100 (712)
--...+++|...|.+.+|.+++++++..+- ..+...-+.|+....+. +.....+..++... .....+...+...
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~---~d~~eIA~Iai~l 1062 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN---YDAPDIANIAISN 1062 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh---ccHHHHHHHHHhC
Confidence 345577888899999999999999984421 23455666677766666 44555555554442 2256688888999
Q ss_pred CChHHHHHHHhhCCCCChhHHHHHHHHHHccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 005136 101 GNLEEAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGV 180 (712)
Q Consensus 101 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 180 (712)
|.+++|..+|++... .....+.++ ...|++++|.++.++.. +..+|..+..++...|++++|++.|.+.
T Consensus 1063 glyEEAf~IYkKa~~-~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA----- 1131 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFDV-NTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA----- 1131 (1630)
T ss_pred CCHHHHHHHHHHcCC-HHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----
Confidence 999999999999752 222223332 37789999999999875 4678889999999999999999999764
Q ss_pred CCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHH
Q 005136 181 KPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVF 260 (712)
Q Consensus 181 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~ 260 (712)
-|...|..++.++.+.|++++|.+.+...++.. +++...+.++.+|++.+++++...+. ..++...|..+...+
T Consensus 1132 -dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~l 1205 (1630)
T 1xi4_A 1132 -DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRC 1205 (1630)
T ss_pred -CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHH
Confidence 377888999999999999999999999888765 33333445888999999988655443 356667788899999
Q ss_pred HhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHH
Q 005136 261 IEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHA 340 (712)
Q Consensus 261 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 340 (712)
...|++++|..+|... ..|..+...+.+.|++++|.+.+++. .+..+|..+..+|...|++..|.....
T Consensus 1206 e~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl 1274 (1630)
T 1xi4_A 1206 YDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGL 1274 (1630)
T ss_pred HhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 9999999999999986 47999999999999999999999876 456888888899999999988888655
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhc--cCChhhHHHHhhcCCC-----
Q 005136 341 HVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGL--NGQMEEAKELFDNMPK----- 413 (712)
Q Consensus 341 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~----- 413 (712)
. +..++..+..++..|.+.|.+++|..+++.....++.....|+-+...+++ .++..++.+.|..-..
T Consensus 1275 ~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~ 1349 (1630)
T 1xi4_A 1275 H-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVL 1349 (1630)
T ss_pred h-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHh
Confidence 3 334667777899999999999999999999988886677778777766665 4556666666665443
Q ss_pred ---CCcccHHHHHHHHHhcCChhHHHHH
Q 005136 414 ---RNDVSWSAIISGYLEHKQFDLVFAV 438 (712)
Q Consensus 414 ---~~~~~~~~l~~~~~~~~~~~~a~~~ 438 (712)
.+...|..+.-.|.+.|+++.|...
T Consensus 1350 r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1350 RAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 2566788899999999999888753
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=4.2e-19 Score=178.38 Aligned_cols=303 Identities=14% Similarity=0.085 Sum_probs=143.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCC--C-CcccHHHHHHHHHhcC
Q 005136 354 SNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPK--R-NDVSWSAIISGYLEHK 430 (712)
Q Consensus 354 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~ 430 (712)
+..+...+...|++++|...|+++.+.++.+..++..+...+...|++++|+..++++.+ | +...+..+...+...|
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQG 85 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcC
Confidence 334444444444444444444444444444444444444444444444444444444331 1 2334455555555555
Q ss_pred ChhHHHHHHHHHHHCCCCC----CHHHHHHH------------HHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 005136 431 QFDLVFAVFNEMLLSGEIP----NKSTFSSV------------LCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTD 494 (712)
Q Consensus 431 ~~~~a~~~~~~~~~~g~~p----~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 494 (712)
++++|...|++..... | +...+..+ ...+...|++++|...+..+.+.. +.+...+..+..
T Consensus 86 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 162 (359)
T 3ieg_A 86 KLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAE 162 (359)
T ss_dssp CHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 5555577777666542 3 22222222 344555556666666655555442 334445555555
Q ss_pred HHHhcCChHHHHHHhccCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH-HH------------HH
Q 005136 495 TYAKSGDIESSRRVFDRMPD---KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELT-IL------------SV 558 (712)
Q Consensus 495 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~-~~------------~l 558 (712)
++...|++++|...++.+.+ .+...+..+...+...|++++|...++++.+. .|+... +. .+
T Consensus 163 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~ 240 (359)
T 3ieg_A 163 CFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIES 240 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555432 23345555555556666666666666655552 333211 11 11
Q ss_pred HHHhcccCcHHHHHHHHHhcchhcCCCCc-h----HHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHh
Q 005136 559 LFACSHSGLVDKGLKYFNSMEPIYNIKPN-G----RHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCK 631 (712)
Q Consensus 559 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 631 (712)
...+...|++++|...++++... .|+ . ..+..++.++...|++++|...+++. ...| +...+..+...+.
T Consensus 241 a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
T 3ieg_A 241 AEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL 317 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 33344455555555555554422 221 1 12233444455555555555555444 1122 3444444444455
Q ss_pred hcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 005136 632 TYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIY 664 (712)
Q Consensus 632 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 664 (712)
..|++++|...++++++++|+++.+...|..+.
T Consensus 318 ~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 318 IEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ 350 (359)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 555555555555555555555544444444443
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=1.7e-18 Score=173.84 Aligned_cols=296 Identities=11% Similarity=0.082 Sum_probs=247.4
Q ss_pred eeeHHHHHHHHhccCChhhHHHHhhcCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005136 385 VVSWNSMIGGYGLNGQMEEAKELFDNMPK---RNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCAS 461 (712)
Q Consensus 385 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~ 461 (712)
...+..+...+...|++++|+..++++.+ .+..++..+...+...|++++|...|+++.+.. +.+...+..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 45677888899999999999999998863 356789999999999999999999999998863 34668888899999
Q ss_pred hccCchHHHHHHHHHHHHcCCC--CchhhHHHH------------HHHHHhcCChHHHHHHhccCC---CCCcchHHHHH
Q 005136 462 ASVASLEKGKDLHGKIIKLGFP--YDVFLGTAL------------TDTYAKSGDIESSRRVFDRMP---DKNEISWTVMV 524 (712)
Q Consensus 462 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~ 524 (712)
...|++++|...+.++.+.... .+...+..+ ...+...|++++|...++.+. +.+...+..+.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 9999999999999999876420 244444444 578899999999999999876 34667888999
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHH-----------
Q 005136 525 RGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYT----------- 592 (712)
Q Consensus 525 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~----------- 592 (712)
..+...|++++|+..++++.+.. +.+...+..+...+...|++++|...|+++.+. .| +...+.
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999842 335678889999999999999999999999843 44 333332
Q ss_pred -HHHHHhhhcCChHHHHHHHHhC-CCCCC-H----HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 005136 593 -CVVDMLSRSGRLSEAEDFINSM-PFEPD-S----NAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYA 665 (712)
Q Consensus 593 -~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 665 (712)
.++..+.+.|++++|...++++ ...|+ . ..+..+...+...|++++|...++++++..|+++.++..++.++.
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL 317 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3377799999999999999987 33444 2 234456777999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHhCCC
Q 005136 666 SAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 666 ~~g~~~eA~~~~~~~~~~~~ 685 (712)
..|++++|++.++++++..+
T Consensus 318 ~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 318 IEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HTTCHHHHHHHHHHHHTTCT
T ss_pred HcCCHHHHHHHHHHHHhcCC
Confidence 99999999999999998654
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=4.1e-18 Score=168.87 Aligned_cols=288 Identities=12% Similarity=0.058 Sum_probs=195.2
Q ss_pred CCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHH
Q 005136 348 EKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYL 427 (712)
Q Consensus 348 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 427 (712)
+.+..++..++..+...|++++|..+|+++.+.++.+...+..++..+...|++++|...+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~------------------- 79 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLS------------------- 79 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHH-------------------
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHH-------------------
Confidence 3455566667777777788888888888877777666666666666666677777774444
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-chHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHH
Q 005136 428 EHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVA-SLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSR 506 (712)
Q Consensus 428 ~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 506 (712)
+++.... +.+...+..+...+...| ++++|...+.++.+.. +.+...+..+..++...|++++|.
T Consensus 80 ------------~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 145 (330)
T 3hym_B 80 ------------HKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAM 145 (330)
T ss_dssp ------------HHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHH
T ss_pred ------------HHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHH
Confidence 4444321 223334444444444444 4555555554444432 223444555566666666666666
Q ss_pred HHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhc
Q 005136 507 RVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIY 582 (712)
Q Consensus 507 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 582 (712)
..++++. +.+...+..+...+...|++++|++.++++.+. .| +...+..+...+...|++++|...++++.+..
T Consensus 146 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 146 AAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI 223 (330)
T ss_dssp HHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence 6666554 223455666777777888888888888887773 34 45667777778888888888888887776321
Q ss_pred C-------CCCchHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 005136 583 N-------IKPNGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH 653 (712)
Q Consensus 583 ~-------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 653 (712)
. ...+...+..++.+|...|++++|...+++. ...| +...+..+...+...|++++|...++++++..|++
T Consensus 224 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 303 (330)
T 3hym_B 224 KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDD 303 (330)
T ss_dssp TTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCC
T ss_pred hhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCc
Confidence 1 1224678889999999999999999999887 3333 46778888888999999999999999999999999
Q ss_pred CchHHHHHHHHH-hcCCc
Q 005136 654 PAGYVLLSNIYA-SAGRW 670 (712)
Q Consensus 654 ~~~~~~l~~~~~-~~g~~ 670 (712)
+.++..++.++. ..|+.
T Consensus 304 ~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 304 TFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHTTTTC-
T ss_pred hHHHHHHHHHHHHHhCch
Confidence 999999999884 55554
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.80 E-value=9e-18 Score=166.39 Aligned_cols=266 Identities=12% Similarity=0.095 Sum_probs=227.6
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHH
Q 005136 414 RNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALT 493 (712)
Q Consensus 414 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 493 (712)
.+...+..++..+...|++++|..+|+++.... +.+...+..++..+...|++++|..++.++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 456677778888888888888899999998764 3445566667788889999999999999999864 55678888999
Q ss_pred HHHHhcC-ChHHHHHHhccCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHH
Q 005136 494 DTYAKSG-DIESSRRVFDRMPD---KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVD 569 (712)
Q Consensus 494 ~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 569 (712)
..+...| ++++|...|++..+ .+...|..+...+...|++++|++.++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998763 356689999999999999999999999999852 234567777889999999999
Q ss_pred HHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CC----------CCCHHHHHHHHHHHhhcCCHH
Q 005136 570 KGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PF----------EPDSNAWASLLSGCKTYKNEQ 637 (712)
Q Consensus 570 ~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~l~~~~~~~g~~~ 637 (712)
+|...++++. ...| +...+..++.++...|++++|...+++. .. ......+..+...+...|+++
T Consensus 177 ~A~~~~~~al---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 177 LAERFFSQAL---SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHH---TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHH---HhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 9999999998 3456 6788999999999999999999999876 11 233578888999999999999
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 638 IAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 638 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
+|...++++++..|+++.++..++.++.+.|++++|.++++++++..+
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999999999998877543
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.79 E-value=6.4e-18 Score=170.36 Aligned_cols=258 Identities=11% Similarity=0.023 Sum_probs=190.6
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 005136 417 VSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTY 496 (712)
Q Consensus 417 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 496 (712)
..+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...+.++.+.. +.+...+..+..+|
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 142 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSF 142 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345555555566666666666666666543 3345555556666666666666666666665543 33455566666666
Q ss_pred HhcCChHHHHHHhccCCC--C-CcchHHH---------------HHHHHHHcCChHHHHHHHHHHHHcCCCCC---HHHH
Q 005136 497 AKSGDIESSRRVFDRMPD--K-NEISWTV---------------MVRGLAESGYAKESINLFEEMEKTSITPN---ELTI 555 (712)
Q Consensus 497 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~ 555 (712)
...|++++|...++++.. | +...+.. .+..+...|++++|+..++++.+. .|+ ..++
T Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~ 220 (368)
T 1fch_A 143 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL--DPTSIDPDVQ 220 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH--STTSCCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHh--CcCcccHHHH
Confidence 666666666666665442 1 1111110 133334889999999999999984 454 6788
Q ss_pred HHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhh
Q 005136 556 LSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKT 632 (712)
Q Consensus 556 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 632 (712)
..+...+...|++++|+..|+++... .| +...+..++.++...|++++|...++++ ...| +...+..+...+..
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 297 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN 297 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 89999999999999999999998843 55 6789999999999999999999999987 3344 47788889999999
Q ss_pred cCCHHHHHHHHHHHhccCCCC-----------CchHHHHHHHHHhcCCchhHHHHHHHHH
Q 005136 633 YKNEQIAERAVKNLWKLAEEH-----------PAGYVLLSNIYASAGRWIDAMNVRKLMT 681 (712)
Q Consensus 633 ~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 681 (712)
.|++++|...++++++..|++ +.++..++.+|...|++++|..++++.+
T Consensus 298 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 298 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 999999999999999999887 7899999999999999999999887544
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=7.4e-17 Score=157.52 Aligned_cols=280 Identities=15% Similarity=0.173 Sum_probs=125.5
Q ss_pred ccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHH
Q 005136 130 KHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGL 209 (712)
Q Consensus 130 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 209 (712)
+.|++++|.+.+++++.|+ +|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4566667777776665443 6667777777777777777777542 4556677777777777777777776665
Q ss_pred HHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHH
Q 005136 210 IFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIA 289 (712)
Q Consensus 210 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 289 (712)
.++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+ ..|..++.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~ 156 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 156 (449)
T ss_dssp ------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence 5553 3345666677777777777777666664 356667777777777777777777777766 36888888
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHH
Q 005136 290 RYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKD 369 (712)
Q Consensus 290 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 369 (712)
.+.+.|++++|.+.++++ .++.+|..++.+|...|+++.|...... +...+.-...++..|.+.|.+++
T Consensus 157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHH
Confidence 888888888888888877 3677888888888888888888554333 22333445568888999999999
Q ss_pred HHHHHHhhhcCCCCceeeHHHHHHHHhc--cCChhhHHHHhhcCCC--------CCcccHHHHHHHHHhcCChhHHHHH
Q 005136 370 GRLVFDSIVEKDVAHVVSWNSMIGGYGL--NGQMEEAKELFDNMPK--------RNDVSWSAIISGYLEHKQFDLVFAV 438 (712)
Q Consensus 370 A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~ 438 (712)
|..+++.....+......|+-+.-.|++ .++..+.++.|..-.. .+...|..+.-.|...++++.|..+
T Consensus 226 ai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 226 LITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 9999998888776677777777777765 3455666666654442 2577899999999999999988764
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.78 E-value=4.6e-16 Score=162.85 Aligned_cols=353 Identities=10% Similarity=-0.003 Sum_probs=232.3
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----cC
Q 005136 294 SGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALAS----LKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSK----CG 365 (712)
Q Consensus 294 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 365 (712)
.+++++|+..|++..+.| +...+..+...+.. .++.++|.+.++...+.| +...+..|...|.. .+
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 444455555554444432 23333333344433 445555555555544433 33344444444444 44
Q ss_pred ChHHHHHHHHhhhcCCCCceeeHHHHHHHHhc----cCChhhHHHHhhcCCC-CCcccHHHHHHHHHh----cCChhHHH
Q 005136 366 ETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGL----NGQMEEAKELFDNMPK-RNDVSWSAIISGYLE----HKQFDLVF 436 (712)
Q Consensus 366 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~ 436 (712)
++++|...|++..+.+ +..++..+...|.. .++.++|++.|++..+ .++..+..+...|.. .+++++|.
T Consensus 130 ~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 207 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQG--RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISA 207 (490)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHH
Confidence 5555555555544433 23334444444443 4555555555554432 244455566666665 66777778
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhc----cCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh----cCChHHHHHH
Q 005136 437 AVFNEMLLSGEIPNKSTFSSVLCASAS----VASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAK----SGDIESSRRV 508 (712)
Q Consensus 437 ~~~~~~~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~ 508 (712)
..|++..+.| +...+..+...+.. .+++++|..++.+..+.+ +...+..+..+|.. .+++++|...
T Consensus 208 ~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~ 281 (490)
T 2xm6_A 208 QWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEW 281 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHH
Confidence 8888877765 34455555555554 678888888888877654 34556667777776 7888899888
Q ss_pred hccCCCC-CcchHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccC---cHHHHHHHHHhcc
Q 005136 509 FDRMPDK-NEISWTVMVRGLAES-----GYAKESINLFEEMEKTSITPNELTILSVLFACSHSG---LVDKGLKYFNSME 579 (712)
Q Consensus 509 ~~~~~~~-~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~ 579 (712)
|+...+. ++..+..+...|... +++++|+..+++..+.| +...+..+...|...| ++++|+++|++..
T Consensus 282 ~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~ 358 (490)
T 2xm6_A 282 YRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAA 358 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 8887643 556677788888877 89999999999998864 4456666777776656 8899999999987
Q ss_pred hhcCCCCchHHHHHHHHHhhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHhccCC
Q 005136 580 PIYNIKPNGRHYTCVVDMLSR----SGRLSEAEDFINSMPFEPDSNAWASLLSGCKT----YKNEQIAERAVKNLWKLAE 651 (712)
Q Consensus 580 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p 651 (712)
+. .++..+..|+.+|.. .+++++|..++++.....++..+..+...|.. .++.++|...++++.+..|
T Consensus 359 ~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 359 AK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 32 467888899999988 88999999999987434567778888888877 8999999999999999984
Q ss_pred C---CCchHHHHHHHHHhc
Q 005136 652 E---HPAGYVLLSNIYASA 667 (712)
Q Consensus 652 ~---~~~~~~~l~~~~~~~ 667 (712)
+ ++.+...|+.++...
T Consensus 435 ~~~~~~~a~~~l~~~~~~~ 453 (490)
T 2xm6_A 435 NLFGTENRNITEKKLTAKQ 453 (490)
T ss_dssp CHHHHHHHHHHHTTSCHHH
T ss_pred CCcCCHHHHHHHHhcCHhH
Confidence 4 788888888776654
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=6.8e-18 Score=164.76 Aligned_cols=219 Identities=15% Similarity=0.157 Sum_probs=63.7
Q ss_pred cCCChhHhHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHccCChHHHHHHhhhCCC-
Q 005136 68 GSRKSLEANEIVKDLNGFDLVVHNCMINANIQWGNLEEAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERNPF- 146 (712)
Q Consensus 68 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~- 146 (712)
+.|++++|.+.++++..|+ +|..|+.++.+.|++++|.+.|.+. +|..+|..++..+...|++++|+.+++...+
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 5566667777777664443 6667777777777777777766543 4555666666666666666666665554332
Q ss_pred -CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHH
Q 005136 147 -QNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSL 225 (712)
Q Consensus 147 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 225 (712)
+++.+.+.++.+|.+.|++.++.++++ .|+..+|..+...|...|.++.|...|..+ ..|..+
T Consensus 91 ~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~L 154 (449)
T 1b89_A 91 ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRL 154 (449)
T ss_dssp ------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHH
T ss_pred CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHH
Confidence 334556666666666666666665553 245556666666666666666666666644 356666
Q ss_pred HHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHH
Q 005136 226 ITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFR 305 (712)
Q Consensus 226 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 305 (712)
+.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. ..+.....++..|.+.|++++|+.+++
T Consensus 155 A~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe 231 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLE 231 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 66666666666666666655 255566666666666666666655544433 222223345555556666666666665
Q ss_pred HHHh
Q 005136 306 QMTR 309 (712)
Q Consensus 306 ~m~~ 309 (712)
....
T Consensus 232 ~aL~ 235 (449)
T 1b89_A 232 AALG 235 (449)
T ss_dssp HHTT
T ss_pred HHhC
Confidence 5543
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.77 E-value=1.1e-15 Score=159.94 Aligned_cols=363 Identities=12% Similarity=0.079 Sum_probs=298.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----cCChHHHH
Q 005136 300 AFRLFRQMTRYSFKPNTSCFSIVLSALAS----LKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSK----CGETKDGR 371 (712)
Q Consensus 300 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 371 (712)
++..++...+. .+...+..+...+.. .++++.|...++...+.| +...+..|...|.. .+++++|.
T Consensus 26 ~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 45555555553 355666666666666 789999999999998875 66778888999998 89999999
Q ss_pred HHHHhhhcCCCCceeeHHHHHHHHhc----cCChhhHHHHhhcCCCC-CcccHHHHHHHHHh----cCChhHHHHHHHHH
Q 005136 372 LVFDSIVEKDVAHVVSWNSMIGGYGL----NGQMEEAKELFDNMPKR-NDVSWSAIISGYLE----HKQFDLVFAVFNEM 442 (712)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~ 442 (712)
..|++..+.+ +..++..+...|.. .+++++|++.|++..+. ++..+..+...|.. .+++++|...|++.
T Consensus 100 ~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a 177 (490)
T 2xm6_A 100 IWYKKAALKG--LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA 177 (490)
T ss_dssp HHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 9999998765 45667778888877 78999999999987654 66788889988887 78999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhc----cCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh----cCChHHHHHHhccCCC
Q 005136 443 LLSGEIPNKSTFSSVLCASAS----VASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAK----SGDIESSRRVFDRMPD 514 (712)
Q Consensus 443 ~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 514 (712)
.+.| +...+..+...|.. .+++++|..++.+..+.+ +......+..+|.. .+++++|...|++..+
T Consensus 178 ~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 251 (490)
T 2xm6_A 178 AEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE 251 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT
T ss_pred HHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 9875 56677777777776 899999999999998865 45677778888876 7899999999998764
Q ss_pred -CCcchHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhccc-----CcHHHHHHHHHhcchhcCC
Q 005136 515 -KNEISWTVMVRGLAE----SGYAKESINLFEEMEKTSITPNELTILSVLFACSHS-----GLVDKGLKYFNSMEPIYNI 584 (712)
Q Consensus 515 -~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~ 584 (712)
.+...+..+...|.. .+++++|++.|++..+.| +...+..+...|... +++++|+..|++..+.
T Consensus 252 ~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--- 325 (490)
T 2xm6_A 252 QGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--- 325 (490)
T ss_dssp TTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT---
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc---
Confidence 456677778888887 899999999999998754 455666777777766 8999999999998732
Q ss_pred CCchHHHHHHHHHhhhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHhccCCCCCchH
Q 005136 585 KPNGRHYTCVVDMLSRSG---RLSEAEDFINSMPFEPDSNAWASLLSGCKT----YKNEQIAERAVKNLWKLAEEHPAGY 657 (712)
Q Consensus 585 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~ 657 (712)
.+...+..++.+|...| ++++|+.++++.....++..+..+...|.. .++.++|...++++.+. .++.++
T Consensus 326 -~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~ 402 (490)
T 2xm6_A 326 -GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQ 402 (490)
T ss_dssp -TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred -CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHH
Confidence 35677888999988766 789999999988444678888888888887 89999999999999875 468899
Q ss_pred HHHHHHHHh----cCCchhHHHHHHHHHhCCC
Q 005136 658 VLLSNIYAS----AGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 658 ~~l~~~~~~----~g~~~eA~~~~~~~~~~~~ 685 (712)
..|+.+|.. .+++++|..++++..+.+.
T Consensus 403 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 403 VQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 999999998 8999999999999998774
No 24
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=1.6e-16 Score=166.15 Aligned_cols=385 Identities=10% Similarity=-0.025 Sum_probs=222.1
Q ss_pred eeHHHHHHHHHhcCChhHHHHHHHHHHhC-----C---CCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcC-------
Q 005136 282 VSWSVMIARYNQSGYPEEAFRLFRQMTRY-----S---FKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIG------- 346 (712)
Q Consensus 282 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------- 346 (712)
..||.|...+...|++++|++.|++..+. + .+....+|..+..++...|++++|...++.+.+..
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 35666666666666666666666655321 1 12234566667777777777777777766665421
Q ss_pred CCCcHHHHHHHHHHHHhc--CChHHHHHHHHhhhcCCCCceeeHHHHHHHH---hccCChhhHHHHhhcCCC--C-Cccc
Q 005136 347 IEKDVFISNALIDLYSKC--GETKDGRLVFDSIVEKDVAHVVSWNSMIGGY---GLNGQMEEAKELFDNMPK--R-NDVS 418 (712)
Q Consensus 347 ~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~--~-~~~~ 418 (712)
......++..+..++... +++++|...|++..+.+|.++..+..+...+ ...++.++|++.+++..+ | +..+
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~ 211 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYL 211 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHH
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHH
Confidence 011234555554444443 4677888888888777766666655555443 344566666666655432 2 3334
Q ss_pred HHHHHHHHH----hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 005136 419 WSAIISGYL----EHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTD 494 (712)
Q Consensus 419 ~~~l~~~~~----~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 494 (712)
+..+...+. ..+++++|...+++..... +.+...+..+...+...|++++|...+.+..+.. +.+..++..+..
T Consensus 212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 289 (472)
T 4g1t_A 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGC 289 (472)
T ss_dssp HHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHH
Confidence 444444333 3356677788887776653 4455667777777888888888888888777653 334555555655
Q ss_pred HHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHH
Q 005136 495 TYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLK 573 (712)
Q Consensus 495 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 573 (712)
+|...+....+... ..........+.++.|...+++..+. .| +...+..+...+...|++++|+.
T Consensus 290 ~y~~~~~~~~~~~~------------~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~ 355 (472)
T 4g1t_A 290 CYRAKVFQVMNLRE------------NGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEAEY 355 (472)
T ss_dssp HHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhhhHHH------------HHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHHHH
Confidence 55432211111000 00011112233467888888888874 44 34667888889999999999999
Q ss_pred HHHhcchhcCCCCchH----HHHHHHHH-hhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHh
Q 005136 574 YFNSMEPIYNIKPNGR----HYTCVVDM-LSRSGRLSEAEDFINSM-PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLW 647 (712)
Q Consensus 574 ~~~~~~~~~~~~p~~~----~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 647 (712)
.|+++.+. .|+.. .+..++.. +...|++++|+..+++. .+.|+..... +....+..++++.+
T Consensus 356 ~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~---------~~~~~l~~~~~~~l 423 (472)
T 4g1t_A 356 YFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE---------KMKDKLQKIAKMRL 423 (472)
T ss_dssp HHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH---------HHHHHHHHHHHHHH
T ss_pred HHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH---------HHHHHHHHHHHHHH
Confidence 99988732 33322 23344433 34788999999999886 5566643332 23345677888899
Q ss_pred ccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCcccEE
Q 005136 648 KLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLRKSGGCSWV 694 (712)
Q Consensus 648 ~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~ 694 (712)
+.+|+++.++..||.+|...|++++|++.+++.++.+...+...+|+
T Consensus 424 ~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 424 SKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 99999999999999999999999999999999999876655555554
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=1.2e-16 Score=153.65 Aligned_cols=240 Identities=10% Similarity=0.050 Sum_probs=174.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCC-CCchhhHHHHHHHHHhcC
Q 005136 422 IISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGF-PYDVFLGTALTDTYAKSG 500 (712)
Q Consensus 422 l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 500 (712)
+.++|...|+++.|+..++. .-+|+..++..+...+...++.++|.+.++++...+. +.+...+..+..++...|
T Consensus 40 l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g 115 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ 115 (291)
T ss_dssp HHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC
Confidence 34444444555444554433 1345556666666667777777777777777666553 334556667778889999
Q ss_pred ChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH---HHHHHHhcccCcHHHHHHHHHh
Q 005136 501 DIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTI---LSVLFACSHSGLVDKGLKYFNS 577 (712)
Q Consensus 501 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~a~~~~~~ 577 (712)
++++|.+.+++ ..+...+..++..+.+.|++++|.+.++++.+. .|+.... ..++..+...|++++|..+|++
T Consensus 116 ~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~ 191 (291)
T 3mkr_A 116 NPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQE 191 (291)
T ss_dssp CHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred CHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 99999999998 567778888999999999999999999999985 5665322 1233444456899999999999
Q ss_pred cchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHH-HHHHHHHHhccCCCC
Q 005136 578 MEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQI-AERAVKNLWKLAEEH 653 (712)
Q Consensus 578 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~p~~ 653 (712)
+.+. .| +...++.++.++.+.|++++|...+++. ...| +..++..++..+...|+.++ +.++++++++++|++
T Consensus 192 ~l~~---~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 192 MADK---CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268 (291)
T ss_dssp HHHH---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred HHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence 9854 44 7888999999999999999999999986 4445 57788888888888888865 678999999999999
Q ss_pred CchHHHHHHHHHhcCCchhHHHH
Q 005136 654 PAGYVLLSNIYASAGRWIDAMNV 676 (712)
Q Consensus 654 ~~~~~~l~~~~~~~g~~~eA~~~ 676 (712)
+.+.. ...+.+.+++|..-
T Consensus 269 ~~~~d----~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 269 PFIKE----YRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHH----HHHHHHHHHHHHHH
T ss_pred hHHHH----HHHHHHHHHHHHHH
Confidence 87654 34444555555443
No 26
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=3.1e-15 Score=158.22 Aligned_cols=409 Identities=11% Similarity=0.062 Sum_probs=286.6
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005136 249 DVVSWTVILDVFIEMGDLGEARRIFDEMPE--R-NEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSA 325 (712)
Q Consensus 249 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 325 (712)
+...|..++. +.+.|++++|..+|+++.+ | +...|..++..+.+.|++++|..+|+++... .|+...+..++..
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSY 88 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHH
Confidence 5668888888 4788999999999999875 3 4557888999999999999999999999873 4777766666643
Q ss_pred H-hccCChhhHHH----HHHHHHHc-CCCC-cHHHHHHHHHHHHh---------cCChHHHHHHHHhhhcCCCCc--eee
Q 005136 326 L-ASLKALRSGMH----VHAHVLKI-GIEK-DVFISNALIDLYSK---------CGETKDGRLVFDSIVEKDVAH--VVS 387 (712)
Q Consensus 326 ~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~--~~~ 387 (712)
. ...|+.+.|.+ +++..+.. |..| +...|...+..... .|+++.|..+|++.... |.. ...
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P~~~~~~~ 167 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-PMINIEQL 167 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-CCTTHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-hhhhHHHH
Confidence 3 34567777665 66666553 5443 45677777776655 68889999999998873 211 122
Q ss_pred HHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHH------HHCC---CCCCH-------
Q 005136 388 WNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEM------LLSG---EIPNK------- 451 (712)
Q Consensus 388 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------~~~g---~~p~~------- 451 (712)
|..........|. ..+..++. ...+++..|..++... .+.. ++|+.
T Consensus 168 ~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 229 (530)
T 2ooe_A 168 WRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQ 229 (530)
T ss_dssp HHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHH
T ss_pred HHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHH
Confidence 3222211100110 01111111 1234455666665542 1211 23431
Q ss_pred -HHHHHHHHHHhc----cCch----HHHHHHHHHHHHcCCCCchhhHHHHHHHHHh-------cCChH-------HHHHH
Q 005136 452 -STFSSVLCASAS----VASL----EKGKDLHGKIIKLGFPYDVFLGTALTDTYAK-------SGDIE-------SSRRV 508 (712)
Q Consensus 452 -~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~ 508 (712)
..+...+..... .++. .++..+++++.... +.+..++..++..+.+ .|+++ +|..+
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~ 308 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 308 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence 334433332221 1232 36677888887752 5567788888887775 68987 89999
Q ss_pred hccCCC---C-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHhcccCcHHHHHHHHHhcchhc
Q 005136 509 FDRMPD---K-NEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNE--LTILSVLFACSHSGLVDKGLKYFNSMEPIY 582 (712)
Q Consensus 509 ~~~~~~---~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 582 (712)
|++..+ | +...|..++..+...|++++|..+|+++++ +.|+. ..|..++..+.+.|++++|..+|++..+.
T Consensus 309 ~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~- 385 (530)
T 2ooe_A 309 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED- 385 (530)
T ss_dssp HHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 998763 3 466788999999999999999999999999 56753 47888888888999999999999999833
Q ss_pred CCCC-chHHHHHHHHH-hhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCc---
Q 005136 583 NIKP-NGRHYTCVVDM-LSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPA--- 655 (712)
Q Consensus 583 ~~~p-~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~--- 655 (712)
.| +...+...+.. +...|+.++|..+|++. ...| +...|..++..+...|+.++|..++++++...|.+|.
T Consensus 386 --~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~ 463 (530)
T 2ooe_A 386 --ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 463 (530)
T ss_dssp --TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCH
T ss_pred --cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHH
Confidence 44 34444433333 33689999999999987 3344 4788888888899999999999999999998877765
Q ss_pred -hHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 656 -GYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 656 -~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
++..++......|+.+.+..+.+++.+.-+
T Consensus 464 ~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 464 EIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 788888888899999999999999887543
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=9e-17 Score=161.65 Aligned_cols=257 Identities=11% Similarity=0.039 Sum_probs=194.0
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 005136 416 DVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDT 495 (712)
Q Consensus 416 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 495 (712)
...+..++..+.+.|++++|...|+++.... +.+...+..+...+...|++++|...+.++.+.. +.+...+..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3446666666666667777777777776653 3456667777777777777777777777777653 3456667777777
Q ss_pred HHhcCChHHHHHHhccCCCCC-------------cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---CHHHHHHHH
Q 005136 496 YAKSGDIESSRRVFDRMPDKN-------------EISWTVMVRGLAESGYAKESINLFEEMEKTSITP---NELTILSVL 559 (712)
Q Consensus 496 ~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~~~l~ 559 (712)
|...|++++|...++++.+.+ ...+..+...+...|++++|++.++++.+. .| +...+..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHHHHH
Confidence 777777777777777665311 122344577888999999999999999985 44 467888999
Q ss_pred HHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCH
Q 005136 560 FACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNE 636 (712)
Q Consensus 560 ~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~ 636 (712)
..+...|++++|+..|+++.+. .| +..++..++.+|...|++++|...++++ ...|+ ...+..+...|...|++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 9999999999999999998843 55 6889999999999999999999999987 44454 78888899999999999
Q ss_pred HHHHHHHHHHhccCCC------------CCchHHHHHHHHHhcCCchhHHHHHHH
Q 005136 637 QIAERAVKNLWKLAEE------------HPAGYVLLSNIYASAGRWIDAMNVRKL 679 (712)
Q Consensus 637 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~eA~~~~~~ 679 (712)
++|...+++++++.|+ +..++..|+.++...|+.+.|..+.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999998877 367899999999999999988887654
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.73 E-value=1.5e-16 Score=157.37 Aligned_cols=259 Identities=11% Similarity=0.008 Sum_probs=188.9
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 005136 418 SWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYA 497 (712)
Q Consensus 418 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 497 (712)
.+..++..+...|++++|..+|+++.... +.+...+..+...+...|++++|...+.++.+.. +.+...+..+..++.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34455555555555555566666665542 2344555555566666666666666666665542 334555666666666
Q ss_pred hcCChHHHHHHhccCCC---CCcchHHHH--------------HH-HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005136 498 KSGDIESSRRVFDRMPD---KNEISWTVM--------------VR-GLAESGYAKESINLFEEMEKTSITPNELTILSVL 559 (712)
Q Consensus 498 ~~g~~~~A~~~~~~~~~---~~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 559 (712)
..|++++|...++.+.+ .+...+..+ .. .+...|++++|++.++++.+.. +.+...+..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 66666666666665542 122222222 22 3677889999999999998852 33567888899
Q ss_pred HHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCH
Q 005136 560 FACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNE 636 (712)
Q Consensus 560 ~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 636 (712)
..+...|++++|...++++.+. .| +...+..++.++...|++++|...++++ ...| +...+..+...+...|++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 9999999999999999998843 45 6788999999999999999999999987 3334 577888888899999999
Q ss_pred HHHHHHHHHHhccCCC------------CCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 637 QIAERAVKNLWKLAEE------------HPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 637 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
++|...++++++..|+ ++.++..++.++.+.|++++|..++++.++
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999999999 788999999999999999999999876544
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=1.5e-16 Score=153.00 Aligned_cols=248 Identities=9% Similarity=0.004 Sum_probs=200.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC
Q 005136 423 ISGYLEHKQFDLVFAVFNEMLLSGEIPNK--STFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSG 500 (712)
Q Consensus 423 ~~~~~~~~~~~~a~~~~~~~~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 500 (712)
++-....|++..|+..++.... ..|+. .....+..++...|+++.|...++. .-+|+...+..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 3445667888888888877543 33543 3456677899999999999876644 24567788888999999999
Q ss_pred ChHHHHHHhccCC----CC-CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHH
Q 005136 501 DIESSRRVFDRMP----DK-NEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYF 575 (712)
Q Consensus 501 ~~~~A~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 575 (712)
+.++|.+.++++. .| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999864 24 455677788999999999999999987 456778889999999999999999999
Q ss_pred HhcchhcCCCCchHHH---HHHHHHhhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC
Q 005136 576 NSMEPIYNIKPNGRHY---TCVVDMLSRSGRLSEAEDFINSM--PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLA 650 (712)
Q Consensus 576 ~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 650 (712)
+++.+. .|+.... ..++..+...|++++|..+|+++ ..+.+...+..+..++...|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999844 4653211 22334455669999999999998 234568888889999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCchh-HHHHHHHHHhCCC
Q 005136 651 EEHPAGYVLLSNIYASAGRWID-AMNVRKLMTEKGL 685 (712)
Q Consensus 651 p~~~~~~~~l~~~~~~~g~~~e-A~~~~~~~~~~~~ 685 (712)
|+++.++..++.++...|+.++ +.++++++++..+
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999987 5789999988654
No 30
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.72 E-value=9.9e-15 Score=154.36 Aligned_cols=368 Identities=9% Similarity=0.057 Sum_probs=212.3
Q ss_pred CCCchhhHHHHHHHhhccchhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHHHHhhcCC--CCcchHHHHH
Q 005136 17 FNSYIETCLCLLKDITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVKDLNG--FDLVVHNCMI 94 (712)
Q Consensus 17 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~ 94 (712)
.|-+...|..++. +...|+++.|+.+++++++..+ .+...|..++..+.+.|+++.|..+|++... |+...|...+
T Consensus 9 ~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P-~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~ 86 (530)
T 2ooe_A 9 NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFP-SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYL 86 (530)
T ss_dssp CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 3556778888887 4677888888888888887753 3677788888888888888888888888733 6666666666
Q ss_pred HHH-HhcCChHHHHH----HHhhCCC------CChhHHHHHHHHHHc---------cCChHHHHHHhhhCCC-CCc---c
Q 005136 95 NAN-IQWGNLEEAQR----LFDGMPE------RNEVSWTALISGFMK---------HGRVEESMWYFERNPF-QNV---I 150 (712)
Q Consensus 95 ~~~-~~~g~~~~A~~----~~~~~~~------~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~-~~~---~ 150 (712)
... ...|+++.|.. +|++..+ .+...|...+....+ .|+++.|+.+|++... |.. .
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 433 34567666654 5544321 234556666655443 5666677776665332 211 1
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHH------hC---CCCC---
Q 005136 151 SWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFK------AG---FEKH--- 218 (712)
Q Consensus 151 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~---~~~~--- 218 (712)
.|..........|. .+...++. ...+++..|..++..+.. .. ++|+
T Consensus 167 ~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~ 224 (530)
T 2ooe_A 167 LWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTP 224 (530)
T ss_dssp HHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--C
T ss_pred HHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCCh
Confidence 12111110000000 00000000 123344555544443211 10 1222
Q ss_pred -----ccHHHHHHHHHHcc----CCh----HHHHHHHhhcCC---CCcchHHHHHHHHHh-------cCCHH-------H
Q 005136 219 -----VSVCNSLITLSLKM----GEV----DLARSVFDRMEK---RDVVSWTVILDVFIE-------MGDLG-------E 268 (712)
Q Consensus 219 -----~~~~~~li~~~~~~----~~~----~~a~~~~~~~~~---~~~~~~~~ll~~~~~-------~~~~~-------~ 268 (712)
...|...+...... ++. ..+..+|++... .+...|..++..+.+ .|+++ +
T Consensus 225 ~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~ 304 (530)
T 2ooe_A 225 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE 304 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHH
Confidence 12344443332221 122 245556665554 244456666655554 56665 6
Q ss_pred HHHHHhhCCC---C-CceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCChhhHHHHHHHH
Q 005136 269 ARRIFDEMPE---R-NEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNT--SCFSIVLSALASLKALRSGMHVHAHV 342 (712)
Q Consensus 269 a~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~ 342 (712)
|..+|++..+ | +...|..++..+.+.|++++|..+|+++.+ +.|+. ..|..++..+.+.|+++.|..+++..
T Consensus 305 A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 305 AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp HHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 7777766653 2 455777788888888888888888888887 44542 46777777777778888888888877
Q ss_pred HHcCCCCcHHHHHHHHHH-HHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcC
Q 005136 343 LKIGIEKDVFISNALIDL-YSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNM 411 (712)
Q Consensus 343 ~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 411 (712)
.+.. +.+...+...+.. +...|+.++|..+|+...+..+.+...|..++..+.+.|+.++|..+|++.
T Consensus 383 l~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~a 451 (530)
T 2ooe_A 383 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERV 451 (530)
T ss_dssp HTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred Hhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHH
Confidence 7652 1123333322222 335778888888888777766656677777777777777777774444443
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.70 E-value=4.5e-16 Score=156.52 Aligned_cols=231 Identities=12% Similarity=0.005 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHH
Q 005136 451 KSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGL 527 (712)
Q Consensus 451 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~ 527 (712)
...+..+...+.+.|++++|..+++++.+.. +.+...+..+..+|...|++++|...|+++. +.+...|..+...|
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4457778888999999999999999999875 5578889999999999999999999999876 34577899999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHH-----------HHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHH
Q 005136 528 AESGYAKESINLFEEMEKTSITPNEL-----------TILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVD 596 (712)
Q Consensus 528 ~~~~~~~~A~~~~~~~~~~~~~p~~~-----------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 596 (712)
...|++++|++.++++.+. .|+.. .+..+...+...|++++|+.+|+++.....-.++..++..++.
T Consensus 144 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999999883 44432 2234577889999999999999999855222225789999999
Q ss_pred HhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHH
Q 005136 597 MLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAM 674 (712)
Q Consensus 597 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~ 674 (712)
+|...|++++|...++++ ...| +...+..+...|...|++++|+..++++++..|+++.++..++.+|.+.|++++|+
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999987 3334 58889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCC
Q 005136 675 NVRKLMTEKG 684 (712)
Q Consensus 675 ~~~~~~~~~~ 684 (712)
..++++++..
T Consensus 302 ~~~~~al~~~ 311 (365)
T 4eqf_A 302 SNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 9999998754
No 32
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.70 E-value=3.2e-16 Score=157.89 Aligned_cols=119 Identities=10% Similarity=0.029 Sum_probs=61.1
Q ss_pred hcCCHHHHHH-HHhhCCC--C-----CceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChh
Q 005136 262 EMGDLGEARR-IFDEMPE--R-----NEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALR 333 (712)
Q Consensus 262 ~~~~~~~a~~-~~~~~~~--~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 333 (712)
..|++++|.. .|++... + +...+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3456666666 5554432 1 23455666666666666666666666666532 234445555555555666666
Q ss_pred hHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCC
Q 005136 334 SGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDV 382 (712)
Q Consensus 334 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 382 (712)
+|...++.+.+.. +.+..++..+..+|...|++++|...|+++....+
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 163 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP 163 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 6666666555543 22445555555555556666666666555555443
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=1.4e-14 Score=151.29 Aligned_cols=390 Identities=11% Similarity=0.018 Sum_probs=210.5
Q ss_pred CccHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCC----C-CCceeHHHHHHHHH
Q 005136 218 HVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMP----E-RNEVSWSVMIARYN 292 (712)
Q Consensus 218 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~-~~~~~~~~l~~~~~ 292 (712)
....|+.|...+...|++++|++.|++. ++++.... . ....+|+.+...|.
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kA------------------------l~~~~~~~~~~~~~~~~~~~~nla~~y~ 105 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKA------------------------EELIQQEHADQAEIRSLVTWGNYAWVYY 105 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHH------------------------HHHHHHHSGGGCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH------------------------HHHHHhcCccccchHHHHHHHHHHHHHH
Confidence 3456777777777777777777777633 22222111 1 22345666666666
Q ss_pred hcCChhHHHHHHHHHHhC-----C-CCC-CHHHHHHHHHHHhc--cCChhhHHHHHHHHHHcCCCCcHHHHHHHHHH---
Q 005136 293 QSGYPEEAFRLFRQMTRY-----S-FKP-NTSCFSIVLSALAS--LKALRSGMHVHAHVLKIGIEKDVFISNALIDL--- 360 (712)
Q Consensus 293 ~~~~~~~a~~~~~~m~~~-----~-~~p-~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--- 360 (712)
..|++++|...+++..+. + ..+ ...++.....++.. .+++++|...|+...+.. +.++..+..+..+
T Consensus 106 ~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~ 184 (472)
T 4g1t_A 106 HMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYR 184 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 666666666666655321 0 111 23344443333332 345777777777776653 1233444444333
Q ss_pred HHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHh----ccCChhhHHHHhhcCC---CCCcccHHHHHHHHHhcCChh
Q 005136 361 YSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYG----LNGQMEEAKELFDNMP---KRNDVSWSAIISGYLEHKQFD 433 (712)
Q Consensus 361 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 433 (712)
+...++.++|...+++..+.++.+..++..+...+. ..++.++|.+.+++.. ..+..++..+...|...|+++
T Consensus 185 l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~ 264 (472)
T 4g1t_A 185 LDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPD 264 (472)
T ss_dssp HHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHH
T ss_pred hcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchH
Confidence 334566677777777777766655555555554443 3456677777777654 234556778888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC
Q 005136 434 LVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP 513 (712)
Q Consensus 434 ~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (712)
+|...|++..+.. +-+..++..+...|...+.... ... ... ........+..+.|...++...
T Consensus 265 ~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~---------~~~-~~~------~~~~~~~~~~~~~A~~~~~~a~ 327 (472)
T 4g1t_A 265 KAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVM---------NLR-ENG------MYGKRKLLELIGHAVAHLKKAD 327 (472)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhh---------hHH-HHH------HHHHHHHHhhHHHHHHHHHHHh
Confidence 8899999998863 3345555555544432111100 000 000 0011112233566777776654
Q ss_pred ---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HhcccCcHHHHHHHHHhcchhcCCCCc
Q 005136 514 ---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNEL--TILSVLF-ACSHSGLVDKGLKYFNSMEPIYNIKPN 587 (712)
Q Consensus 514 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~p~ 587 (712)
..+...+..+...+...|++++|++.|++..+....|... .+..+.. .....|++++|+..|++.. .+.|+
T Consensus 328 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal---~i~~~ 404 (472)
T 4g1t_A 328 EANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV---KINQK 404 (472)
T ss_dssp HHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---HSCCC
T ss_pred hcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCcc
Confidence 3456678899999999999999999999999853333221 2223322 2357899999999999887 34664
Q ss_pred hHHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 005136 588 GRHYTCVVDMLSRSGRLSEAEDFINSM-PF-EPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLS 661 (712)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 661 (712)
....... ...+..++++. .. +.+..++..+...|...|++++|++.+++++++.|.+|.+...+|
T Consensus 405 ~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 405 SREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp CHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred cHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 3322222 22233344433 22 334678888999999999999999999999999999998877665
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.66 E-value=1.6e-15 Score=139.26 Aligned_cols=193 Identities=12% Similarity=0.044 Sum_probs=155.9
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHhccCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 005136 483 PYDVFLGTALTDTYAKSGDIESSRRVFDRMPD---KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPN-ELTILSV 558 (712)
Q Consensus 483 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l 558 (712)
+++...+..+...+.+.|++++|...|++..+ .+...+..+...+...|++++|+..+++..+ +.|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 55667778888889999999999999988753 3556788889999999999999999999998 4564 4678888
Q ss_pred HHHhccc-----------CcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHH
Q 005136 559 LFACSHS-----------GLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPDSNAWAS 625 (712)
Q Consensus 559 ~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 625 (712)
..++... |++++|+..|++..+ +.| +...+..++.+|...|++++|+..+++. ....+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8889998 999999999999984 367 6888999999999999999999999987 22277888999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHH
Q 005136 626 LLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLM 680 (712)
Q Consensus 626 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 680 (712)
+..++...|++++|+..++++++.+|+++.++..++.++.+.|++++|++.+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998754
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.65 E-value=1.6e-15 Score=149.96 Aligned_cols=271 Identities=11% Similarity=0.025 Sum_probs=149.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCC---CCcccHHHHHHHHHhcC
Q 005136 354 SNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPK---RNDVSWSAIISGYLEHK 430 (712)
Q Consensus 354 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~ 430 (712)
+..+...+...|++++|..+|+++.+..+.+..++..+...+...|++++|...++++.+ .+..++..++..+...|
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC
Confidence 334444555555555555555555554444444455555555555555555444433321 12334444444555555
Q ss_pred ChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHH-HH-HHHhcCChHHHHH
Q 005136 431 QFDLVFAVFNEMLLSGEIPNK-STFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTAL-TD-TYAKSGDIESSRR 507 (712)
Q Consensus 431 ~~~~a~~~~~~~~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~g~~~~A~~ 507 (712)
++++|...++++.... |+. ..+..+... .++......+ .. .+...|++++|..
T Consensus 104 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~ 159 (327)
T 3cv0_A 104 NANAALASLRAWLLSQ--PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRECRT 159 (327)
T ss_dssp CHHHHHHHHHHHHHTS--TTTTTC------------------------------------------CCTTSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHHHH
Confidence 5555566666666542 221 111111000 0000000011 11 2445555666666
Q ss_pred HhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCC
Q 005136 508 VFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNI 584 (712)
Q Consensus 508 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 584 (712)
.++++. ..+...+..+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|...|+++.+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--- 235 (327)
T 3cv0_A 160 LLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--- 235 (327)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---
Confidence 665543 2244566667777777777777777777777632 224556677777777777777777777777632
Q ss_pred CC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-------------CHHHHHHHHHHHhhcCCHHHHHHHHHHHhcc
Q 005136 585 KP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-------------DSNAWASLLSGCKTYKNEQIAERAVKNLWKL 649 (712)
Q Consensus 585 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 649 (712)
.| +...+..++.+|.+.|++++|...++++ ...| +...+..+..++...|+.++|...++++++.
T Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 236 NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315 (327)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34 5667777777788888888888777765 2222 2556667777777888888888877777665
Q ss_pred CCC
Q 005136 650 AEE 652 (712)
Q Consensus 650 ~p~ 652 (712)
.|+
T Consensus 316 ~~~ 318 (327)
T 3cv0_A 316 FAK 318 (327)
T ss_dssp HHH
T ss_pred cch
Confidence 443
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=6.1e-15 Score=140.05 Aligned_cols=224 Identities=10% Similarity=0.059 Sum_probs=164.3
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 005136 418 SWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYA 497 (712)
Q Consensus 418 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 497 (712)
.+..+...+...|++++|...|++..+.. .+...+..+...+...|++++|...+.++.+.....
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------------- 71 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM------------- 71 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-------------
Confidence 45555555666666666666666655544 444445555555555555555555554443321000
Q ss_pred hcCChHHHHHHhccCCCCC----cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHH
Q 005136 498 KSGDIESSRRVFDRMPDKN----EISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLK 573 (712)
Q Consensus 498 ~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 573 (712)
.++ ...+..+...+...|++++|++.++++.+ +.|+.. .+...|++++|..
T Consensus 72 ----------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~-------~~~~~~~~~~a~~ 126 (258)
T 3uq3_A 72 ----------------RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTAD-------ILTKLRNAEKELK 126 (258)
T ss_dssp ----------------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHH-------HHHHHHHHHHHHH
T ss_pred ----------------ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchhH-------HHHHHhHHHHHHH
Confidence 011 35567778888888999999999988888 456533 3556688999999
Q ss_pred HHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC
Q 005136 574 YFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFE-PDSNAWASLLSGCKTYKNEQIAERAVKNLWKLA 650 (712)
Q Consensus 574 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 650 (712)
.++++.. ..| +...+..++.++...|++++|...+++. ... .+...+..+...+...|++++|...++++++..
T Consensus 127 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 127 KAEAEAY---VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHH---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHH---cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 9998873 356 6778889999999999999999999987 333 357788888888999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 651 EEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 651 p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
|+++.++..++.++...|++++|++.+++.++..
T Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 204 PNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999988754
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=2.2e-14 Score=136.12 Aligned_cols=234 Identities=13% Similarity=0.061 Sum_probs=173.8
Q ss_pred eeeHHHHHHHHhccCChhhHHHHhhcCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCC----HHHHHH
Q 005136 385 VVSWNSMIGGYGLNGQMEEAKELFDNMPK--RNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGE--IPN----KSTFSS 456 (712)
Q Consensus 385 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~--~p~----~~~~~~ 456 (712)
...+..+...+...|++++|+..+++..+ .+..++..+..++...|++++|...+++...... .|+ ...+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45678889999999999999999987643 6677899999999999999999999999876431 112 456666
Q ss_pred HHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHH
Q 005136 457 VLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKES 536 (712)
Q Consensus 457 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 536 (712)
+...+...|++++|...+.++.+.. |+ ...+...|++++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~--------------------------------------~~~~~~~~~~~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RT--------------------------------------ADILTKLRNAEKE 124 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CC--------------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--ch--------------------------------------hHHHHHHhHHHHH
Confidence 6677777777777777777666542 11 1234555667777
Q ss_pred HHHHHHHHHcCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC
Q 005136 537 INLFEEMEKTSITPN-ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM 614 (712)
Q Consensus 537 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 614 (712)
+..++++.. ..|+ ...+..+...+...|++++|+..|+++... .| +...+..++.+|.+.|++++|...+++.
T Consensus 125 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 125 LKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 777777776 3443 355667777777888888888888877633 34 5777888888888888888888888876
Q ss_pred -CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC------CCCCchHHHHHHH
Q 005136 615 -PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLA------EEHPAGYVLLSNI 663 (712)
Q Consensus 615 -~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~ 663 (712)
...| +...+..+...+...|++++|...+++++++. |++..++..+..+
T Consensus 200 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 200 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 3334 46777788888888999999999999998888 7777666666543
No 38
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.60 E-value=7.1e-16 Score=162.74 Aligned_cols=143 Identities=9% Similarity=0.156 Sum_probs=119.4
Q ss_pred hhHHHHHHHHHHccCChHHHHHHhhhC-------CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHH
Q 005136 118 EVSWTALISGFMKHGRVEESMWYFERN-------PFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSI 190 (712)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 190 (712)
..+|++||++|++.|++++|.++|++| ..||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 458999999999999999999999653 3689999999999999999999999999999999999999999999
Q ss_pred HHHHhcccch-HHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCC---C------CcchHHHHHHHH
Q 005136 191 CKACAEINDF-RLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEK---R------DVVSWTVILDVF 260 (712)
Q Consensus 191 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~------~~~~~~~ll~~~ 260 (712)
|.++++.|+. +.|.+++++|.+.|+.||..+|+.++....+. .+++..+++.. | .+.+...|...|
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 9999999984 78999999999999999999999998766554 44444444432 2 233444555666
Q ss_pred HhcC
Q 005136 261 IEMG 264 (712)
Q Consensus 261 ~~~~ 264 (712)
.+.+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 6544
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.59 E-value=3.2e-14 Score=136.33 Aligned_cols=242 Identities=10% Similarity=-0.028 Sum_probs=107.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCc--hhhHHHHHHHH
Q 005136 419 WSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYD--VFLGTALTDTY 496 (712)
Q Consensus 419 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~ 496 (712)
+......+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+.++.+....++ ...+..+..++
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3344445555555555566666555532 11222444444455555555555555555444211111 11134444444
Q ss_pred HhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcccCcHHHHH
Q 005136 497 AKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPN-ELTILSVLFACSHSGLVDKGL 572 (712)
Q Consensus 497 ~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~ 572 (712)
...|++++|...|++.. +.+...|..+...+...|++++|++.+++..+. .|+ ...+..+...+...+++++|+
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444433 123334444444455555555555555444442 232 223333331222233555555
Q ss_pred HHHHhcchhcCCCC-chHHHHHHHHHhhhcCC---hHHHHHHHHhC----CCCCC------HHHHHHHHHHHhhcCCHHH
Q 005136 573 KYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGR---LSEAEDFINSM----PFEPD------SNAWASLLSGCKTYKNEQI 638 (712)
Q Consensus 573 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~p~------~~~~~~l~~~~~~~g~~~~ 638 (712)
..|+++.+. .| +...+..++.++...|+ +++|...+++. ...|+ ...+..+...|...|++++
T Consensus 163 ~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 163 SSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 555554422 33 34444445555554444 44444444443 11122 1334445555555666666
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHh
Q 005136 639 AERAVKNLWKLAEEHPAGYVLLSNIYAS 666 (712)
Q Consensus 639 a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 666 (712)
|...++++++++|+++.+...+..+...
T Consensus 240 A~~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 240 ADAAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred HHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 6666666666666665555555544443
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.58 E-value=5.2e-14 Score=135.04 Aligned_cols=240 Identities=9% Similarity=-0.046 Sum_probs=182.4
Q ss_pred cCChhHHHHHHHHHHHCCCC---CCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHH
Q 005136 429 HKQFDLVFAVFNEMLLSGEI---PNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESS 505 (712)
Q Consensus 429 ~~~~~~a~~~~~~~~~~g~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 505 (712)
.|++++|+..|+++.+.... .+...+..+...+...|++++|...+.++.+.. +.+...+..+..+|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 45667778888888775321 134567777778888888888888888887764 44677788888888888999999
Q ss_pred HHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhc
Q 005136 506 RRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIY 582 (712)
Q Consensus 506 ~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 582 (712)
...|+++. +.+...+..+...+...|++++|++.++++.+ ..|+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 88888776 34567888899999999999999999999998 4676665555556667779999999999877743
Q ss_pred CCCCchHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCch
Q 005136 583 NIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-----SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAG 656 (712)
Q Consensus 583 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 656 (712)
.+++...+ .++..+...++.++|...+++. ...|. ...+..+...+...|++++|...++++++..|++...
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 22343333 4777778888889999999886 33332 4677888888999999999999999999999987543
Q ss_pred HHHHHHHHHhcCCchhHHHHH
Q 005136 657 YVLLSNIYASAGRWIDAMNVR 677 (712)
Q Consensus 657 ~~~l~~~~~~~g~~~eA~~~~ 677 (712)
.+.++...|++++|++.+
T Consensus 252 ---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 ---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHhhHHHH
Confidence 477888899999998876
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.57 E-value=1.2e-13 Score=141.99 Aligned_cols=344 Identities=10% Similarity=0.046 Sum_probs=233.2
Q ss_pred HHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCh---HHHHHHHHhhhcCCCCceeeHHHHHHHHhcc
Q 005136 322 VLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGET---KDGRLVFDSIVEKDVAHVVSWNSMIGGYGLN 398 (712)
Q Consensus 322 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 398 (712)
+...+.+.|++++|.+.+....+.| +...+..|...|...|+. ++|...|++..+. +..++..+...+...
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-------------------------------CHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhC
Confidence 5566677899999999999998876 334455566777778888 8999999998866 467777787755555
Q ss_pred C-----ChhhHHHHhhcCCCC-CcccHHHHHHHHHhcCChh---HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHH
Q 005136 399 G-----QMEEAKELFDNMPKR-NDVSWSAIISGYLEHKQFD---LVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEK 469 (712)
Q Consensus 399 ~-----~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~ 469 (712)
+ +.++|+..|++..++ ++..+..|...|...++.+ .+.+.+......|. ......+...|...+.+++
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGG
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCccc
Confidence 4 778999999887754 5668888999888776644 45555555555553 2344455566666676666
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHhcC---ChHHHHHHhccCCCC---CcchHHHHHHHHHHc----CChHHHHHH
Q 005136 470 GKDLHGKIIKLGFPYDVFLGTALTDTYAKSG---DIESSRRVFDRMPDK---NEISWTVMVRGLAES----GYAKESINL 539 (712)
Q Consensus 470 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~----~~~~~A~~~ 539 (712)
+......+.+.-...++..+..|..+|...| +.++|...|+...+. +...+..+...|... +++++|++.
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~ 239 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQAL 239 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 5555444444333444558888889999999 889999999887643 233336677777554 689999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHH-h--cccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcC-----ChHHHHHHH
Q 005136 540 FEEMEKTSITPNELTILSVLFA-C--SHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSG-----RLSEAEDFI 611 (712)
Q Consensus 540 ~~~~~~~~~~p~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~ 611 (712)
|++.. . -+...+..+... + ...+++++|+..|++..+. + +...+..|+.+|. .| ++++|..+|
T Consensus 240 ~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 240 LEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHF 310 (452)
T ss_dssp HHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred HHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 99987 3 234455555555 3 5689999999999998732 2 6778888888887 55 999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh----cCCchhHHHHHHHHHhC
Q 005136 612 NSMPFEPDSNAWASLLSGCKT----YKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYAS----AGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 612 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~ 683 (712)
++.- ..+......+...|.. ..+.++|..+++++.+ +.++.+...|+.+|.. ..+..+|..++++..+.
T Consensus 311 ~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 311 EKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp HTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred HHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 9988 6667777777766655 3499999999999876 4668899999999986 45899999999999888
Q ss_pred CCc
Q 005136 684 GLR 686 (712)
Q Consensus 684 ~~~ 686 (712)
|.+
T Consensus 388 g~~ 390 (452)
T 3e4b_A 388 DTP 390 (452)
T ss_dssp CCH
T ss_pred CCH
Confidence 754
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.56 E-value=2.6e-13 Score=139.47 Aligned_cols=336 Identities=10% Similarity=0.005 Sum_probs=153.4
Q ss_pred HHHHHhcCChHHHHHHHhhCCC-CChhHHHHHHHHHHccCCh---HHHHHHhhhCCCCCcccHHHHHHHHHhcC-----C
Q 005136 94 INANIQWGNLEEAQRLFDGMPE-RNEVSWTALISGFMKHGRV---EESMWYFERNPFQNVISWTAAICGFVQNG-----F 164 (712)
Q Consensus 94 ~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~li~~~~~~g-----~ 164 (712)
...+.+.|++++|..+|++..+ .++..+..|...|...|+. ++|..+|++....+...+..+...+...| +
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~ 89 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAE 89 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcC
Confidence 3444455555555555555433 2333444444555555555 56666665544445555555555444443 5
Q ss_pred hhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHH---HHHHHHHHHHhCCCCCccHHHHHHHHHHccCC----hHH
Q 005136 165 SFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRL---GLSVFGLIFKAGFEKHVSVCNSLITLSLKMGE----VDL 237 (712)
Q Consensus 165 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----~~~ 237 (712)
+++|+..|++..+.|.. ..+..|...+...+..+. +.+.+......| ++.....+...|...+. .+.
T Consensus 90 ~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~ 163 (452)
T 3e4b_A 90 HHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDD 163 (452)
T ss_dssp HHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHH
T ss_pred HHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHH
Confidence 56677777666665432 244455555554443332 333333333333 23444455555555553 333
Q ss_pred HHHHHhhcCCCCcchHHHHHHHHHhcC---CHHHHHHHHhhCCC---CCceeHHHHHHHHHhc----CChhHHHHHHHHH
Q 005136 238 ARSVFDRMEKRDVVSWTVILDVFIEMG---DLGEARRIFDEMPE---RNEVSWSVMIARYNQS----GYPEEAFRLFRQM 307 (712)
Q Consensus 238 a~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~----~~~~~a~~~~~~m 307 (712)
+..+++.....++..+..+...|...| +.++|+..|++..+ ++...+..+...|... +++++|++.|+..
T Consensus 164 a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~a 243 (452)
T 3e4b_A 164 VERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKI 243 (452)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 444444444444445555555555555 55555555554432 1222223444444332 4566666666665
Q ss_pred HhCCCCCCHHHHHHHHHH-H--hccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC-----ChHHHHHHHHhhhc
Q 005136 308 TRYSFKPNTSCFSIVLSA-L--ASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCG-----ETKDGRLVFDSIVE 379 (712)
Q Consensus 308 ~~~~~~p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~ 379 (712)
. . -+...+..+... + ...+++++|...++...+.| +...+..|..+|. .| ++++|...|++..
T Consensus 244 a-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa- 314 (452)
T 3e4b_A 244 A-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV- 314 (452)
T ss_dssp G-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-
T ss_pred c-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-
Confidence 5 2 222333333333 2 33566666666666666554 4445555555555 33 6666666666665
Q ss_pred CCCCceeeHHHHHHHHhc----cCChhhHHHHhhcCCCC-CcccHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 005136 380 KDVAHVVSWNSMIGGYGL----NGQMEEAKELFDNMPKR-NDVSWSAIISGYLE----HKQFDLVFAVFNEMLLSG 446 (712)
Q Consensus 380 ~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g 446 (712)
+.+..++..+...|.. ..+.++|...|+...++ ++.....|...|.. ..++.+|..+|+...+.|
T Consensus 315 --~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 315 --GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp --TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred --CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 2234445555544444 23556666666554432 34455555555543 235556666666665555
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.55 E-value=3.1e-13 Score=129.37 Aligned_cols=229 Identities=6% Similarity=-0.005 Sum_probs=188.6
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC--CCcc----hHHHHHHH
Q 005136 453 TFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPD--KNEI----SWTVMVRG 526 (712)
Q Consensus 453 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~l~~~ 526 (712)
.+......+...|++++|...+.++.+.. +.+...+..+..+|...|++++|...+++..+ ++.. .|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34456677889999999999999998864 44566888899999999999999999988764 2333 38889999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCCh
Q 005136 527 LAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRL 604 (712)
Q Consensus 527 ~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 604 (712)
+...|++++|++.+++..+. .| +...+..+...+...|++++|+..|++.. ...| +...+..++..+...+++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI---RPTTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC---CSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHcccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHh---hcCCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999984 44 45788899999999999999999999998 3366 677888888344445699
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCC---HHHHHHHHHHHhccC---CCC-----CchHHHHHHHHHhcCCch
Q 005136 605 SEAEDFINSM-PFEPD-SNAWASLLSGCKTYKN---EQIAERAVKNLWKLA---EEH-----PAGYVLLSNIYASAGRWI 671 (712)
Q Consensus 605 ~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~ 671 (712)
++|...++++ ...|+ ...+..+...+...|+ +++|...++++++.. |+. ..++..++.+|...|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999987 44454 6777777777888888 888999999998875 442 258889999999999999
Q ss_pred hHHHHHHHHHhCCCcc
Q 005136 672 DAMNVRKLMTEKGLRK 687 (712)
Q Consensus 672 eA~~~~~~~~~~~~~~ 687 (712)
+|+++++++++..+..
T Consensus 239 ~A~~~~~~al~~~p~~ 254 (272)
T 3u4t_A 239 KADAAWKNILALDPTN 254 (272)
T ss_dssp HHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhcCccH
Confidence 9999999999876543
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.55 E-value=9.2e-13 Score=126.05 Aligned_cols=226 Identities=13% Similarity=0.029 Sum_probs=159.3
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCchHHHHHHHHHHHHcCCCCchhhHH
Q 005136 415 NDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASAS----VASLEKGKDLHGKIIKLGFPYDVFLGT 490 (712)
Q Consensus 415 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 490 (712)
++.++..+...+...|++++|...|++..+.+ +...+..+...+.. .+++++|...+.+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~---------- 71 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL---------- 71 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----------
Confidence 34455566666666666666666666665522 23334444444444 44444444444444332
Q ss_pred HHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc--
Q 005136 491 ALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAE----SGYAKESINLFEEMEKTSITPNELTILSVLFACSH-- 564 (712)
Q Consensus 491 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-- 564 (712)
.+...+..+...|.. .+++++|++.+++..+.+ +...+..+...|..
T Consensus 72 ------------------------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 72 ------------------------NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp ------------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred ------------------------CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 234455566666666 778888888888877753 56677777777777
Q ss_pred --cCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cC
Q 005136 565 --SGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSR----SGRLSEAEDFINSMPFEPDSNAWASLLSGCKT----YK 634 (712)
Q Consensus 565 --~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g 634 (712)
.+++++|+..|++..+. + +...+..++.+|.. .+++++|...+++.....+...+..+...|.. .+
T Consensus 125 ~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred CcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc
Confidence 88888888888887732 2 56677778888877 88899999888887323456777777778888 89
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHh----cCCchhHHHHHHHHHhCCCc
Q 005136 635 NEQIAERAVKNLWKLAEEHPAGYVLLSNIYAS----AGRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 635 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~~~ 686 (712)
++++|...++++.+..| +.++..|+.+|.. .|++++|++++++..+.|.+
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 99999999999998865 7889999999999 99999999999999887754
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.55 E-value=3e-13 Score=127.76 Aligned_cols=198 Identities=6% Similarity=-0.051 Sum_probs=161.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 005136 486 VFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFAC 562 (712)
Q Consensus 486 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 562 (712)
...+..+...+...|++++|...++++. ..+...+..+...+...|++++|++.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 3445566667777777777777777654 2355677888888899999999999999988842 33567788888889
Q ss_pred cccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHH
Q 005136 563 SHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIA 639 (712)
Q Consensus 563 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 639 (712)
...|++++|.++++++.. .+..| +...+..++.++...|++++|...++++ ...| +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999884 23456 5778888999999999999999999887 3334 477788888889999999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 640 ERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 640 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
...++++++..|+++..+..++.++...|++++|.++++++.+..+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999988654
No 46
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.54 E-value=2.7e-15 Score=158.41 Aligned_cols=144 Identities=8% Similarity=0.071 Sum_probs=109.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhC-------CCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005136 252 SWTVILDVFIEMGDLGEARRIFDEM-------PERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLS 324 (712)
Q Consensus 252 ~~~~ll~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 324 (712)
||+++|.+|++.|++++|..+|++| ..||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+.+|.
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~ 208 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 5666666666666666666666443 258999999999999999999999999999999999999999999999
Q ss_pred HHhccCCh-hhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCC------ceeeHHHHHHHHhc
Q 005136 325 ALASLKAL-RSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVA------HVVSWNSMIGGYGL 397 (712)
Q Consensus 325 ~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~ 397 (712)
++++.|+. +.|.+++++|.+.|+.||..+|++++..+.+. .+++..+++...-.| ...+...|...|.+
T Consensus 209 glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~ 284 (1134)
T 3spa_A 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284 (1134)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCC
T ss_pred HHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhCcccCCCCCCcccccchHHHHHHHcc
Confidence 99999985 78999999999999999999999998766554 333444444221111 23344455566655
Q ss_pred cC
Q 005136 398 NG 399 (712)
Q Consensus 398 ~~ 399 (712)
.+
T Consensus 285 d~ 286 (1134)
T 3spa_A 285 DG 286 (1134)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.54 E-value=3.3e-13 Score=133.97 Aligned_cols=245 Identities=12% Similarity=0.072 Sum_probs=194.6
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc-hHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 005136 416 DVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVAS-LEKGKDLHGKIIKLGFPYDVFLGTALTD 494 (712)
Q Consensus 416 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 494 (712)
...|..+...+...|++++|+..|++.+... +-+...+..+..++...|+ +++|...++++.+.. +.+...+..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3467788888888899999999999988763 3456677777888888886 999999999988865 456778888888
Q ss_pred HHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcc-cCcHH
Q 005136 495 TYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSH-SGLVD 569 (712)
Q Consensus 495 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~-~g~~~ 569 (712)
++...|++++|...|+++. ..+...|..+..++...|++++|+..++++++ +.| +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcch
Confidence 8999999999999998876 34667888889999999999999999999998 455 45678888888887 56546
Q ss_pred HH-----HHHHHhcchhcCCCC-chHHHHHHHHHhhhcC--ChHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcC------
Q 005136 570 KG-----LKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSG--RLSEAEDFINSMPFEPD-SNAWASLLSGCKTYK------ 634 (712)
Q Consensus 570 ~a-----~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~g------ 634 (712)
+| +..|+++.. +.| +...|..++.++...| ++++|.+.++++...|+ ...+..++..|...|
T Consensus 253 eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 66 477887773 467 6778888888888887 68899988888754554 566777777777653
Q ss_pred --C-HHHHHHHHHHH-hccCCCCCchHHHHHHHHHhc
Q 005136 635 --N-EQIAERAVKNL-WKLAEEHPAGYVLLSNIYASA 667 (712)
Q Consensus 635 --~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 667 (712)
+ .++|+.+++++ .+++|.....|..++..+...
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58899999999 899999888888888777654
No 48
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.53 E-value=2.6e-13 Score=121.04 Aligned_cols=165 Identities=14% Similarity=0.101 Sum_probs=145.1
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHH
Q 005136 516 NEISWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTC 593 (712)
Q Consensus 516 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 593 (712)
+..+|..+...+...|++++|++.|++.++ +.| +...+..+..++...|++++|+..++.+... .| +...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHH
Confidence 456788899999999999999999999998 456 4567888899999999999999999998743 55 6778888
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCch
Q 005136 594 VVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWI 671 (712)
Q Consensus 594 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 671 (712)
++..+...+++++|...+++. ...| +...+..+...+...|++++|+..++++++.+|+++.++..+|.+|.+.|+++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 899999999999999999887 3344 47778888888999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCC
Q 005136 672 DAMNVRKLMTEKGL 685 (712)
Q Consensus 672 eA~~~~~~~~~~~~ 685 (712)
+|++.+++.++..+
T Consensus 159 ~A~~~~~~al~~~p 172 (184)
T 3vtx_A 159 EAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHhCCc
Confidence 99999999998654
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.53 E-value=1.2e-13 Score=137.03 Aligned_cols=226 Identities=13% Similarity=0.104 Sum_probs=193.1
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCC-hHHHHHHhccCC---CCCcchHHHHHHHH
Q 005136 452 STFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGD-IESSRRVFDRMP---DKNEISWTVMVRGL 527 (712)
Q Consensus 452 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~---~~~~~~~~~l~~~~ 527 (712)
..+..+...+...|++++|...+.++++.. +.+...+..+..++...|+ +++|+..|+++. ..+...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456666777888999999999999999875 5567888999999999997 999999999887 34667899999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhh-cCCh
Q 005136 528 AESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSR-SGRL 604 (712)
Q Consensus 528 ~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~-~g~~ 604 (712)
...|++++|+..|+++++ +.| +...|..+..++...|++++|+..|+++.+ +.| +...|+.++.+|.+ .|..
T Consensus 177 ~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999 556 557889999999999999999999999984 477 78899999999999 6666
Q ss_pred HHH-----HHHHHhC-CCCCC-HHHHHHHHHHHhhcC--CHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC-------
Q 005136 605 SEA-----EDFINSM-PFEPD-SNAWASLLSGCKTYK--NEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAG------- 668 (712)
Q Consensus 605 ~~A-----~~~~~~~-~~~p~-~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------- 668 (712)
++| +..+++. ...|+ ...|..+...+...| ++++|...++++ +.+|+++.++..|+.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 888 4777776 44564 677888888888877 689999999998 899999999999999999975
Q ss_pred --CchhHHHHHHHH-HhCC
Q 005136 669 --RWIDAMNVRKLM-TEKG 684 (712)
Q Consensus 669 --~~~eA~~~~~~~-~~~~ 684 (712)
..++|+++++++ ++.+
T Consensus 331 ~~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKD 349 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 258999999998 6654
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.52 E-value=6.4e-13 Score=122.96 Aligned_cols=198 Identities=13% Similarity=0.055 Sum_probs=153.0
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 005136 486 VFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFAC 562 (712)
Q Consensus 486 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 562 (712)
...+..+...+...|++++|...++.+. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 4445556666666677777776666554 2345567777888888888888888888888742 33556777888888
Q ss_pred ccc-CcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHH
Q 005136 563 SHS-GLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQI 638 (712)
Q Consensus 563 ~~~-g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 638 (712)
... |++++|...++++.+ .+..| +...+..++.++...|++++|...++++ ...| +...+..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 888 999999999988874 23344 4677888888999999999999998887 3334 47777888888889999999
Q ss_pred HHHHHHHHhccCC-CCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 639 AERAVKNLWKLAE-EHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 639 a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
|...++++++..| +++..+..++.++...|+.++|..+++.+.+..+
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 9999999999999 8888888888888999999999999888876543
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.52 E-value=1.7e-13 Score=128.63 Aligned_cols=198 Identities=10% Similarity=0.071 Sum_probs=142.3
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHhccCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005136 485 DVFLGTALTDTYAKSGDIESSRRVFDRMPD---KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFA 561 (712)
Q Consensus 485 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 561 (712)
....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|++.++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 344555566667777777777777776643 345567777888888888888888888888742 3355677788888
Q ss_pred hcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHH
Q 005136 562 CSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFE-PDSNAWASLLSGCKTYKNEQI 638 (712)
Q Consensus 562 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~ 638 (712)
+...|++++|...++++.+. .| +...+..++.++...|++++|...++++ ... .+...+..+...+...|++++
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA---GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 88889999999988888743 34 6777888888889999999999988887 333 356777778888889999999
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 005136 639 AERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 639 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 686 (712)
|...++++++..|+++.++..++.++...|++++|+++++++++..+.
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 999999999999998899999999999999999999999998876543
No 52
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.50 E-value=9.9e-13 Score=120.50 Aligned_cols=191 Identities=10% Similarity=0.021 Sum_probs=90.2
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 005136 415 NDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTD 494 (712)
Q Consensus 415 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 494 (712)
+...+..+...+...|++++|...|++.++.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34455566666666666666677777766543 3345556666666666666666666666666543 334455555555
Q ss_pred HHHhc-----------CChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005136 495 TYAKS-----------GDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLF 560 (712)
Q Consensus 495 ~~~~~-----------g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 560 (712)
++... |++++|...+++.. +.+...|..+...+...|++++|+..|++.++.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 55555 44444444444433 1122334444444444444444444444444433 33344444444
Q ss_pred HhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHH
Q 005136 561 ACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFIN 612 (712)
Q Consensus 561 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 612 (712)
++...|++++|+..|+++.+. .| +...+..++.++.+.|++++|+..++
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 444444444444444444321 33 33344444444444444444444443
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.49 E-value=3.4e-13 Score=126.61 Aligned_cols=213 Identities=9% Similarity=0.063 Sum_probs=139.3
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 005136 416 DVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDT 495 (712)
Q Consensus 416 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 495 (712)
...|..+...+...|++++|...|+++.... +.+...+.. +..+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~-----------------------------------la~~ 66 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYIN-----------------------------------FANL 66 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHH-----------------------------------HHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHH-----------------------------------HHHH
Confidence 3445555566666666666666666655532 223344444 4444
Q ss_pred HHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHH
Q 005136 496 YAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGL 572 (712)
Q Consensus 496 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 572 (712)
+...|++++|...++++. ..+...+..+...+...|++++|++.++++.+.. +.+...+..+...+...|++++|.
T Consensus 67 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~ 145 (243)
T 2q7f_A 67 LSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLAL 145 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHH
Confidence 445555555555544433 2345566777778888888888888888888742 335567778888888999999999
Q ss_pred HHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhcc
Q 005136 573 KYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFE-PDSNAWASLLSGCKTYKNEQIAERAVKNLWKL 649 (712)
Q Consensus 573 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 649 (712)
..++++.+. .| +...+..++.++.+.|++++|...++++ ... .+...+..+...+...|++++|...++++++.
T Consensus 146 ~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 146 PYLQRAVEL---NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHh---CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 999988743 44 6778889999999999999999999887 333 34778888888899999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhcC
Q 005136 650 AEEHPAGYVLLSNIYASAG 668 (712)
Q Consensus 650 ~p~~~~~~~~l~~~~~~~g 668 (712)
.|+++.++..++.+....|
T Consensus 223 ~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 223 QPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp CTTCHHHHHHHTC------
T ss_pred CcchHHHHHHHHHHHhhcc
Confidence 9999988888776655444
No 54
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.49 E-value=3.5e-12 Score=120.40 Aligned_cols=208 Identities=10% Similarity=0.043 Sum_probs=141.2
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 005136 416 DVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDT 495 (712)
Q Consensus 416 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 495 (712)
...+..++..+...|++++|...|+++.... +.+...+..+...+...|++++|...+.++.+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-------------- 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------
Confidence 3445556666666666666666666655542 2233444444444444444444444444443321
Q ss_pred HHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcccCcHHHHHHH
Q 005136 496 YAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPN-ELTILSVLFACSHSGLVDKGLKY 574 (712)
Q Consensus 496 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~ 574 (712)
..+...+..+...+...|++++|++.++++.+.+..|+ ...+..+...+...|++++|...
T Consensus 102 ------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 102 ------------------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ------------------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 22444566667777777888888888887776334453 35667777788888888888888
Q ss_pred HHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC
Q 005136 575 FNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAE 651 (712)
Q Consensus 575 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 651 (712)
++++.+. .| +...+..++.++...|++++|...++++ ...| +...+..+...+...|+.++|.+.++++.+..|
T Consensus 164 ~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 164 FEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 8887743 44 5778888899999999999999999887 3333 466677777778899999999999999999999
Q ss_pred CCCchHHH
Q 005136 652 EHPAGYVL 659 (712)
Q Consensus 652 ~~~~~~~~ 659 (712)
+++.....
T Consensus 241 ~~~~~~~~ 248 (252)
T 2ho1_A 241 GSLEYQEF 248 (252)
T ss_dssp TSHHHHHH
T ss_pred CCHHHHHH
Confidence 98765543
No 55
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.49 E-value=1.2e-13 Score=143.04 Aligned_cols=191 Identities=7% Similarity=-0.001 Sum_probs=164.7
Q ss_pred CchhhHHHHHHHHHhcCCh-HHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005136 484 YDVFLGTALTDTYAKSGDI-ESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVL 559 (712)
Q Consensus 484 ~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 559 (712)
.+...+..+...+...|++ ++|...|++.. ..+...|..+...|...|++++|++.|++..+ +.|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHH
Confidence 3556666677777777777 77777777664 23466788899999999999999999999998 568888888999
Q ss_pred HHhccc---------CcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhc--------CChHHHHHHHHhC-CCCC--
Q 005136 560 FACSHS---------GLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRS--------GRLSEAEDFINSM-PFEP-- 618 (712)
Q Consensus 560 ~~~~~~---------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~-~~~p-- 618 (712)
..+... |++++|+..|+++.+. .| +...+..++.+|... |++++|+..|++. ...|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 254 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence 999999 9999999999999843 66 688999999999998 9999999999988 4455
Q ss_pred --CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHH
Q 005136 619 --DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKL 679 (712)
Q Consensus 619 --~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 679 (712)
+...+..+..+|...|++++|...++++++++|+++.++..++.++...|++++|++.+.+
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6888999999999999999999999999999999999999999999999999999986554
No 56
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.48 E-value=5.2e-12 Score=120.79 Aligned_cols=226 Identities=10% Similarity=-0.019 Sum_probs=167.4
Q ss_pred ceeeHHHHHHHHhccCChhhHHHHhhcCCCC-CcccHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005136 384 HVVSWNSMIGGYGLNGQMEEAKELFDNMPKR-NDVSWSAIISGYLE----HKQFDLVFAVFNEMLLSGEIPNKSTFSSVL 458 (712)
Q Consensus 384 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll 458 (712)
+..++..+...+...|++++|++.|++..++ +..++..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 4667888889999999999999999988765 56688889999999 999999999999999876 566777777
Q ss_pred HHHhc----cCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHH----c
Q 005136 459 CASAS----VASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAE----S 530 (712)
Q Consensus 459 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~----~ 530 (712)
..+.. .+++++|...+++..+.+ +.. .+..+...|.. .
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~-------------------------------a~~~lg~~~~~~~~~~ 127 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAE-------------------------------GCASLGGIYHDGKVVT 127 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH-------------------------------HHHHHHHHHHHCSSSC
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---Ccc-------------------------------HHHHHHHHHHcCCCcc
Confidence 77777 777788777777766543 233 34444455555 6
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcc----cCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhh----cC
Q 005136 531 GYAKESINLFEEMEKTSITPNELTILSVLFACSH----SGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSR----SG 602 (712)
Q Consensus 531 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g 602 (712)
+++++|++.+++..+.+ +...+..+...|.. .+++++|+..|++..+. .+...+..++.+|.. .+
T Consensus 128 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 128 RDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCC
T ss_pred cCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCc
Confidence 66777777777777643 44555566666665 77888888888777632 245667778888887 88
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHhccCCCC
Q 005136 603 RLSEAEDFINSMPFEPDSNAWASLLSGCKT----YKNEQIAERAVKNLWKLAEEH 653 (712)
Q Consensus 603 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~ 653 (712)
++++|...+++.....+...+..+...|.. .++.++|...++++.+..|++
T Consensus 201 ~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 201 NFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 888888888876222336666777777777 888888888888888887763
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.48 E-value=1.6e-13 Score=140.43 Aligned_cols=263 Identities=11% Similarity=0.021 Sum_probs=177.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCchHHHHHHHHHHHHc----C-CCCchhhHH
Q 005136 420 SAIISGYLEHKQFDLVFAVFNEMLLSGEIPNK----STFSSVLCASASVASLEKGKDLHGKIIKL----G-FPYDVFLGT 490 (712)
Q Consensus 420 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~ 490 (712)
..+...+...|++++|...|++..+.+ +.+. ..+..+...+...|++++|...+.+..+. + .+.....+.
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 334455555566666666666666542 1122 34555555666666666666666665532 1 112334556
Q ss_pred HHHHHHHhcCChHHHHHHhccCCCC---------CcchHHHHHHHHHHcCC-----------------hHHHHHHHHHHH
Q 005136 491 ALTDTYAKSGDIESSRRVFDRMPDK---------NEISWTVMVRGLAESGY-----------------AKESINLFEEME 544 (712)
Q Consensus 491 ~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~~~ 544 (712)
.+...|...|++++|...+++..+. ...++..+...+...|+ +++|++.+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 6666777777777777776665421 12356677777888888 888888887765
Q ss_pred Hc----CCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCc----hHHHHHHHHHhhhcCChHHHHHHHHhC-
Q 005136 545 KT----SITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPN----GRHYTCVVDMLSRSGRLSEAEDFINSM- 614 (712)
Q Consensus 545 ~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~- 614 (712)
+. +..| ....+..+...+...|++++|+..+++..+...-.++ ...+..++.+|...|++++|...+++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 42 1112 1246777888888999999999999887632111111 237788899999999999999998876
Q ss_pred CC---CCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC------CchHHHHHHHHHhcCCchhHHHHHHHHH
Q 005136 615 PF---EPD----SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH------PAGYVLLSNIYASAGRWIDAMNVRKLMT 681 (712)
Q Consensus 615 ~~---~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 681 (712)
.. ..+ ...+..+...+...|++++|...++++++..++. ..++..++.+|.+.|++++|.+++++.+
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 11 112 4566777888999999999999999998875543 3488999999999999999999999987
Q ss_pred hC
Q 005136 682 EK 683 (712)
Q Consensus 682 ~~ 683 (712)
+.
T Consensus 371 ~~ 372 (411)
T 4a1s_A 371 QL 372 (411)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 58
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.47 E-value=4.9e-13 Score=128.18 Aligned_cols=220 Identities=12% Similarity=-0.004 Sum_probs=179.4
Q ss_pred HhccCchHHHHHHHHHHHHcCC---CCchhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChH
Q 005136 461 SASVASLEKGKDLHGKIIKLGF---PYDVFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAK 534 (712)
Q Consensus 461 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 534 (712)
....|++++|...+.++.+... +.+...+..+...+...|++++|...|+++. ..+...|..+...+...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 3456889999999999988632 2246778889999999999999999999876 346778999999999999999
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHh
Q 005136 535 ESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINS 613 (712)
Q Consensus 535 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 613 (712)
+|++.++++.+. .| +...+..+...+...|++++|...|+++.+. .|+..........+...|++++|...+++
T Consensus 95 ~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 95 AAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999999999984 44 5678889999999999999999999999843 56544444455556778999999999976
Q ss_pred C-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC----CCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 614 M-PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEE----HPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 614 ~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
. ...|+......++..+...++.++|...++++++..|. ++.++..++.+|.+.|++++|+..++++++.++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 170 HFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 6 22233222334666788889999999999999988764 368999999999999999999999999998664
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.46 E-value=5e-13 Score=136.40 Aligned_cols=289 Identities=9% Similarity=0.046 Sum_probs=135.8
Q ss_pred eHHHHHHHHhccCChhhHHHHhhcCCC--CC-----cccHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHH
Q 005136 387 SWNSMIGGYGLNGQMEEAKELFDNMPK--RN-----DVSWSAIISGYLEHKQFDLVFAVFNEMLLS----GEIPN-KSTF 454 (712)
Q Consensus 387 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~~p~-~~~~ 454 (712)
.+......+...|++++|+..+++..+ |+ ..++..+...+...|++++|...+++.... +..|. ...+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 344555556666666666666655442 21 134555566666666666666666654332 11111 2344
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHc----CCC-CchhhHHHHHHHHHhcCC--------------------hHHHHHHh
Q 005136 455 SSVLCASASVASLEKGKDLHGKIIKL----GFP-YDVFLGTALTDTYAKSGD--------------------IESSRRVF 509 (712)
Q Consensus 455 ~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~ 509 (712)
..+...+...|++++|...+.+..+. +.. ....++..+...|...|+ +++|...+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 44555555666666666665555432 100 012244455555555555 55555554
Q ss_pred ccCCC-----CC----cchHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhcccCcHHHHHHHH
Q 005136 510 DRMPD-----KN----EISWTVMVRGLAESGYAKESINLFEEMEKTSI-TPN----ELTILSVLFACSHSGLVDKGLKYF 575 (712)
Q Consensus 510 ~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~ 575 (712)
++..+ .+ ..++..+...+...|++++|+..+++..+... .++ ...+..+...+...|++++|...+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 44321 11 12344455555555555555555555443200 011 113444555555555555555555
Q ss_pred HhcchhcCCCC----chHHHHHHHHHhhhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHhhcCCHHHHHHHH
Q 005136 576 NSMEPIYNIKP----NGRHYTCVVDMLSRSGRLSEAEDFINSM----PFEPD----SNAWASLLSGCKTYKNEQIAERAV 643 (712)
Q Consensus 576 ~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~ 643 (712)
++......-.+ ...++..++.+|...|++++|...+++. +..++ ...+..+...+...|++++|...+
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55432110000 1334445555555555555555555543 00111 233444444455555555555555
Q ss_pred HHHhccCCCCC------chHHHHHHHHHhcCCchhHHH
Q 005136 644 KNLWKLAEEHP------AGYVLLSNIYASAGRWIDAMN 675 (712)
Q Consensus 644 ~~~~~~~p~~~------~~~~~l~~~~~~~g~~~eA~~ 675 (712)
++++++.+... .++..++.++...|+...+..
T Consensus 331 ~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 368 (406)
T 3sf4_A 331 EKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNN 368 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC--
T ss_pred HHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHH
Confidence 55555555542 244445555555555444333
No 60
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.46 E-value=5.5e-12 Score=116.62 Aligned_cols=199 Identities=11% Similarity=0.031 Sum_probs=137.5
Q ss_pred HHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHc-CCh
Q 005136 458 LCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAES-GYA 533 (712)
Q Consensus 458 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~-~~~ 533 (712)
...+...|++++|...+..+.+.. +.+...+..+..++...|++++|...++++. ..+...+..+...+... |++
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 93 (225)
T 2vq2_A 15 AMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRP 93 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcH
Confidence 333334444444444444433321 2233344445555555555555555555443 23445667777788888 888
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHH
Q 005136 534 KESINLFEEMEKTSITPN-ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFI 611 (712)
Q Consensus 534 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 611 (712)
++|+..++++.+.+..|+ ...+..+..++...|++++|+..++++.+. .| +...+..++.++.+.|++++|...+
T Consensus 94 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~ 170 (225)
T 2vq2_A 94 AESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYF 170 (225)
T ss_dssp HHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 888888888887433444 466778888888999999999999988743 45 5788889999999999999999999
Q ss_pred HhC-CCC--CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 005136 612 NSM-PFE--PDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLL 660 (712)
Q Consensus 612 ~~~-~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 660 (712)
+++ ... .+...+..+...+...|+.+.+..+++.+.+..|+++.+...+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 171 KKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 887 333 3566666666668899999999999999999999988766544
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.46 E-value=4.7e-13 Score=136.58 Aligned_cols=199 Identities=10% Similarity=0.015 Sum_probs=152.6
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCC-CHHHHHHHHHHHhccCc--------------------hHHH
Q 005136 416 DVSWSAIISGYLEHKQFDLVFAVFNEMLLSG----EIP-NKSTFSSVLCASASVAS--------------------LEKG 470 (712)
Q Consensus 416 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g----~~p-~~~~~~~ll~~~~~~~~--------------------~~~a 470 (712)
..++..+...|...|++++|...+++..... ..+ ...++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 3467788889999999999999999876531 111 13477778888999999 9999
Q ss_pred HHHHHHHHHc----CCC-CchhhHHHHHHHHHhcCChHHHHHHhccCCC-----CC----cchHHHHHHHHHHcCChHHH
Q 005136 471 KDLHGKIIKL----GFP-YDVFLGTALTDTYAKSGDIESSRRVFDRMPD-----KN----EISWTVMVRGLAESGYAKES 536 (712)
Q Consensus 471 ~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A 536 (712)
...+.+..+. +.. ....++..+..+|...|++++|...+++..+ ++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 9999887653 211 1245677888999999999999999988762 22 22688889999999999999
Q ss_pred HHHHHHHHHcCC-CCC----HHHHHHHHHHhcccCcHHHHHHHHHhcchhcCC---CC-chHHHHHHHHHhhhcCChHHH
Q 005136 537 INLFEEMEKTSI-TPN----ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNI---KP-NGRHYTCVVDMLSRSGRLSEA 607 (712)
Q Consensus 537 ~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~p-~~~~~~~l~~~~~~~g~~~~A 607 (712)
+..+++..+... .++ ..++..+...+...|++++|...+++......- .+ ...++..++.+|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999876311 111 356778888999999999999999988643211 12 256788899999999999999
Q ss_pred HHHHHhC
Q 005136 608 EDFINSM 614 (712)
Q Consensus 608 ~~~~~~~ 614 (712)
...+++.
T Consensus 327 ~~~~~~a 333 (406)
T 3sf4_A 327 MHFAEKH 333 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.45 E-value=1e-12 Score=130.10 Aligned_cols=265 Identities=14% Similarity=0.065 Sum_probs=191.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCchHHHHHHHHHHHHc----CCC-CchhhH
Q 005136 419 WSAIISGYLEHKQFDLVFAVFNEMLLSGEIPN----KSTFSSVLCASASVASLEKGKDLHGKIIKL----GFP-YDVFLG 489 (712)
Q Consensus 419 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~ 489 (712)
+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...+.+..+. +.. .....+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3444566677777777788888777653 222 245666777777788888888877776532 212 124566
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCC-----CC----cchHHHHHHHHHHcCC--------------------hHHHHHHH
Q 005136 490 TALTDTYAKSGDIESSRRVFDRMPD-----KN----EISWTVMVRGLAESGY--------------------AKESINLF 540 (712)
Q Consensus 490 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~~ 540 (712)
..+...|...|++++|...+++..+ .+ ..++..+...+...|+ +++|++.+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 6777788888888888888776542 12 2267777888888888 88888888
Q ss_pred HHHHHc----CCCCC-HHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC----chHHHHHHHHHhhhcCChHHHHHHH
Q 005136 541 EEMEKT----SITPN-ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP----NGRHYTCVVDMLSRSGRLSEAEDFI 611 (712)
Q Consensus 541 ~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~ 611 (712)
++..+. +..|. ...+..+...+...|++++|...+++..+...-.+ ....+..++.++...|++++|...+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 876542 11121 24577788888999999999999988763211111 2347888999999999999999999
Q ss_pred HhC-C---CCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC------CchHHHHHHHHHhcCCchhHHHHH
Q 005136 612 NSM-P---FEPD----SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH------PAGYVLLSNIYASAGRWIDAMNVR 677 (712)
Q Consensus 612 ~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~eA~~~~ 677 (712)
++. . ..++ ...+..+...+...|++++|...++++++..|.. ..++..++.+|.+.|++++|..++
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 876 1 1222 4556777788999999999999999998876543 348889999999999999999999
Q ss_pred HHHHhCC
Q 005136 678 KLMTEKG 684 (712)
Q Consensus 678 ~~~~~~~ 684 (712)
++.++..
T Consensus 327 ~~a~~~~ 333 (338)
T 3ro2_A 327 EKHLEIS 333 (338)
T ss_dssp HHHHHC-
T ss_pred HHHHHHH
Confidence 9998743
No 63
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.42 E-value=1.3e-12 Score=140.25 Aligned_cols=161 Identities=17% Similarity=0.209 Sum_probs=144.7
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHH
Q 005136 517 EISWTVMVRGLAESGYAKESINLFEEMEKTSITPN-ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCV 594 (712)
Q Consensus 517 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 594 (712)
...++.|...+.+.|++++|++.|++.++ +.|+ ...+..+..+|.+.|++++|++.|+++.+ +.| +...+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~nL 83 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 45688889999999999999999999998 5665 57788999999999999999999999883 477 68899999
Q ss_pred HHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchh
Q 005136 595 VDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWID 672 (712)
Q Consensus 595 ~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~e 672 (712)
+.+|.+.|++++|++.|++. ...|+ ...+..+...+...|++++|++.++++++++|+++.++..|+.+|...|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999987 45565 77889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 005136 673 AMNVRKLMTE 682 (712)
Q Consensus 673 A~~~~~~~~~ 682 (712)
|.+.++++++
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998765
No 64
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.38 E-value=1.4e-09 Score=115.29 Aligned_cols=227 Identities=11% Similarity=-0.019 Sum_probs=135.2
Q ss_pred CcccHHHHHHHHHhcCChhHHH-HHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHH
Q 005136 415 NDVSWSAIISGYLEHKQFDLVF-AVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALT 493 (712)
Q Consensus 415 ~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 493 (712)
....|...+..+...|+.++|. .+|++.... ++.+...+...+....+.|++++|..+++.+.+... ..+..+-
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~----~~~~~~~ 416 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIH----LDLAALM 416 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----HHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH----HHhhhhh
Confidence 4445556666666666666665 777776653 334444455555556666677777776666654210 0000000
Q ss_pred HHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHhcc-cCcHHHH
Q 005136 494 DTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKT-SITPNELTILSVLFACSH-SGLVDKG 571 (712)
Q Consensus 494 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~-~g~~~~a 571 (712)
. .....++. ..........+|...+....+.|+.+.|..+|.++++. + .+....|...+..-.+ .++.+.|
T Consensus 417 ~---~~p~~~~~---~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~A 489 (679)
T 4e6h_A 417 E---DDPTNESA---INQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTA 489 (679)
T ss_dssp H---HSTTCHHH---HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHH
T ss_pred h---ccCcchhh---hhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHH
Confidence 0 00000000 00000011235777777777888889999999988874 2 1122333322222223 3558999
Q ss_pred HHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 005136 572 LKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP----DSNAWASLLSGCKTYKNEQIAERAVKNL 646 (712)
Q Consensus 572 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 646 (712)
.++|+...+.+ ..+...+...++.....|+.+.|..+|++. ...| ....|...+..-...|+.+.+..+.+++
T Consensus 490 r~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~ 567 (679)
T 4e6h_A 490 CKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRF 567 (679)
T ss_dssp HHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999888542 225566677888888889999999999986 3333 2455677777777889999999999999
Q ss_pred hccCCCCCc
Q 005136 647 WKLAEEHPA 655 (712)
Q Consensus 647 ~~~~p~~~~ 655 (712)
.+..|+++.
T Consensus 568 ~~~~P~~~~ 576 (679)
T 4e6h_A 568 FEKFPEVNK 576 (679)
T ss_dssp HHHSTTCCH
T ss_pred HHhCCCCcH
Confidence 999998753
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.36 E-value=4e-12 Score=129.90 Aligned_cols=269 Identities=9% Similarity=0.037 Sum_probs=158.2
Q ss_pred HHHHHHHhcCChHHHHHHHHhhhcCCCCce----eeHHHHHHHHhccCChhhHHHHhhcCCC---------CCcccHHHH
Q 005136 356 ALIDLYSKCGETKDGRLVFDSIVEKDVAHV----VSWNSMIGGYGLNGQMEEAKELFDNMPK---------RNDVSWSAI 422 (712)
Q Consensus 356 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~l 422 (712)
.+...+...|++++|...|+++.+..+.+. .++..+...+...|++++|+..+++..+ ....++..+
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 344455555666666666655555443222 2344444555555555555444433221 012345556
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCc----------hHHHHHHHHHHHHcCCCCchh
Q 005136 423 ISGYLEHKQFDLVFAVFNEMLLS----GEIP-NKSTFSSVLCASASVAS----------LEKGKDLHGKIIKLGFPYDVF 487 (712)
Q Consensus 423 ~~~~~~~~~~~~a~~~~~~~~~~----g~~p-~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~ 487 (712)
...|...|++++|...+++.... +-.| ...++..+...+...|+ ++.+...
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~-------------- 198 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA-------------- 198 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH--------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH--------------
Confidence 66666666666666666655432 1011 12233334444444444 0111000
Q ss_pred hHHHHHHHHHhcCChHHHHHHhccCCC-----C----CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HH
Q 005136 488 LGTALTDTYAKSGDIESSRRVFDRMPD-----K----NEISWTVMVRGLAESGYAKESINLFEEMEKTSI-TPN----EL 553 (712)
Q Consensus 488 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~ 553 (712)
+++|...+++..+ . ....+..+...+...|++++|+..+++..+... .++ ..
T Consensus 199 --------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (411)
T 4a1s_A 199 --------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERR 264 (411)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 4444444433321 0 123566677788888888888888887765211 011 13
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC----chHHHHHHHHHhhhcCChHHHHHHHHhC-CC---CCC----HH
Q 005136 554 TILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP----NGRHYTCVVDMLSRSGRLSEAEDFINSM-PF---EPD----SN 621 (712)
Q Consensus 554 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~ 621 (712)
.+..+...+...|++++|...+++......-.. ....+..++.+|...|++++|...+++. .. .++ ..
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 344 (411)
T 4a1s_A 265 ANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEAR 344 (411)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHH
Confidence 677788888999999999999988763211111 2567788999999999999999999876 11 122 44
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCCC
Q 005136 622 AWASLLSGCKTYKNEQIAERAVKNLWKLAEE 652 (712)
Q Consensus 622 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 652 (712)
.+..+...|...|++++|...+++++++.+.
T Consensus 345 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 345 ACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 6677788899999999999999999988765
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.36 E-value=9.6e-12 Score=110.79 Aligned_cols=165 Identities=10% Similarity=0.080 Sum_probs=137.4
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 005136 485 DVFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLF 560 (712)
Q Consensus 485 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 560 (712)
+..+|..+...|...|++++|...|++.. +.+...|..+...+...|++++|+..+.+.... .| +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 45677778888888888888888888765 345667888888999999999999999998884 44 4566777778
Q ss_pred HhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHH
Q 005136 561 ACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQ 637 (712)
Q Consensus 561 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 637 (712)
.+...++++.|...+.+.... .| +...+..++.+|.+.|++++|++.+++. ...| +...+..+..++...|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 888999999999999988733 55 6788899999999999999999999987 4444 4778888999999999999
Q ss_pred HHHHHHHHHhccCCCCC
Q 005136 638 IAERAVKNLWKLAEEHP 654 (712)
Q Consensus 638 ~a~~~~~~~~~~~p~~~ 654 (712)
+|+..++++++++|+++
T Consensus 159 ~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHhCCccCH
Confidence 99999999999999864
No 67
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.35 E-value=2.8e-09 Score=113.09 Aligned_cols=210 Identities=9% Similarity=-0.038 Sum_probs=117.2
Q ss_pred cHHHHHHHHHHHHhcCChHHHH-HHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCC-------------C-
Q 005136 350 DVFISNALIDLYSKCGETKDGR-LVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPK-------------R- 414 (712)
Q Consensus 350 ~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------------~- 414 (712)
...+|...+..+...|+.++|. .+|++.....|.+...|...+......|++++|.++|+.+.+ |
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 3444444444444445544443 555544443333333344444444444445444444443321 1
Q ss_pred -----------CcccHHHHHHHHHhcCChhHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcC
Q 005136 415 -----------NDVSWSAIISGYLEHKQFDLVFAVFNEMLLS-G-EIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLG 481 (712)
Q Consensus 415 -----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 481 (712)
...+|...+....+.|+.+.|..+|.+..+. + ..+......+.+.- ...++.+.|..+|+...+.
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~-~~~~d~e~Ar~ife~~Lk~- 499 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEY-HISKDTKTACKVLELGLKY- 499 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHH-TTTSCCHHHHHHHHHHHHH-
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHH-
Confidence 1224666666666677777778888877765 2 12222222222221 1234577888888777765
Q ss_pred CCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCc------chHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 005136 482 FPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNE------ISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTI 555 (712)
Q Consensus 482 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~ 555 (712)
++.+...+...++.....|+.+.|..+|++...... ..|...+..-...|+.+.+.++.+++.+. .|+....
T Consensus 500 ~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~ 577 (679)
T 4e6h_A 500 FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKL 577 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHH
T ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHH
Confidence 344555666667766777788888888877664322 35677777777778888888888877773 4555444
Q ss_pred HHHHHHhc
Q 005136 556 LSVLFACS 563 (712)
Q Consensus 556 ~~l~~~~~ 563 (712)
..++.-|.
T Consensus 578 ~~f~~ry~ 585 (679)
T 4e6h_A 578 EEFTNKYK 585 (679)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhc
Confidence 44444443
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.35 E-value=9.2e-12 Score=123.17 Aligned_cols=134 Identities=10% Similarity=0.014 Sum_probs=93.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC----chH
Q 005136 519 SWTVMVRGLAESGYAKESINLFEEMEKTSI-TPN----ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP----NGR 589 (712)
Q Consensus 519 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~ 589 (712)
.+..+...+...|++++|...+++..+... .++ ...+..+...+...|++++|...+++......-.+ ...
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 466667777788888888888877665210 111 23567777788888999999888887753211111 155
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-C---CCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC
Q 005136 590 HYTCVVDMLSRSGRLSEAEDFINSM-P---FEPD----SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEE 652 (712)
Q Consensus 590 ~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 652 (712)
++..++.+|...|++++|...+++. . ..++ ...+..+...+...|++++|...+++++++.+.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 7778889999999999999998876 1 1112 445677778899999999999999999988765
No 69
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.35 E-value=9.4e-12 Score=111.01 Aligned_cols=162 Identities=15% Similarity=0.051 Sum_probs=116.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHh
Q 005136 520 WTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDML 598 (712)
Q Consensus 520 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 598 (712)
+..+...+...|++++|+..++++.+. .+.+...+..+...+...|++++|...++++.+. .| +...+..++..+
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD---APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHH
Confidence 344455555556666666666555442 1223445556666666666777777666666532 33 566777777788
Q ss_pred hhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHH
Q 005136 599 SRSGRLSEAEDFINSM-PF-EPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNV 676 (712)
Q Consensus 599 ~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~ 676 (712)
...|++++|.+.++++ .. +.+...+..+...+...|++++|...++++++..|+++.++..++.++...|++++|..+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888888776 22 345667777788888999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCC
Q 005136 677 RKLMTEKGL 685 (712)
Q Consensus 677 ~~~~~~~~~ 685 (712)
++++++..+
T Consensus 167 ~~~~~~~~~ 175 (186)
T 3as5_A 167 FKKANELDE 175 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHcCC
Confidence 999887543
No 70
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.34 E-value=1.6e-11 Score=113.76 Aligned_cols=168 Identities=9% Similarity=-0.016 Sum_probs=113.2
Q ss_pred CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHH
Q 005136 516 NEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCV 594 (712)
Q Consensus 516 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 594 (712)
++..+......+...|++++|++.|++.++....++...+..+..++...|++++|+..|++.. ...| +...+..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~l 82 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAI---KKNYNLANAYIGK 82 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HTTCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHH---HhCcchHHHHHHH
Confidence 3445556666667777777777777777664322455555556666777777777777777766 2345 45666677
Q ss_pred HHHhhhcCChHHHHHHHHhC-CCCCC-H-------HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC--CCchHHHHHHH
Q 005136 595 VDMLSRSGRLSEAEDFINSM-PFEPD-S-------NAWASLLSGCKTYKNEQIAERAVKNLWKLAEE--HPAGYVLLSNI 663 (712)
Q Consensus 595 ~~~~~~~g~~~~A~~~~~~~-~~~p~-~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 663 (712)
+.+|...|++++|...+++. ...|+ . ..+..+...+...|++++|+..++++++.+|+ ++.++..++.+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 77777777777777777665 22333 3 34555556666777777777777777777777 77777777777
Q ss_pred HHhcCCc---------------------------hhHHHHHHHHHhCCCc
Q 005136 664 YASAGRW---------------------------IDAMNVRKLMTEKGLR 686 (712)
Q Consensus 664 ~~~~g~~---------------------------~eA~~~~~~~~~~~~~ 686 (712)
|...|+. ++|+.++++.++..+.
T Consensus 163 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 163 FYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 7777766 9999999999886543
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.33 E-value=1.5e-11 Score=124.08 Aligned_cols=223 Identities=9% Similarity=0.025 Sum_probs=150.0
Q ss_pred HHhccCchHHHHHHHHHHHHc--CCCC---chhhHHHHHHHHHhcCChHHHHHHhccCCC-----CC-----cchHHHHH
Q 005136 460 ASASVASLEKGKDLHGKIIKL--GFPY---DVFLGTALTDTYAKSGDIESSRRVFDRMPD-----KN-----EISWTVMV 524 (712)
Q Consensus 460 ~~~~~~~~~~a~~~~~~~~~~--~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~l~ 524 (712)
.+...|++++|...+.+..+. ..+. ...++..+..+|...|+++.|...+++..+ ++ ..+++.+.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 344555555555555555432 1111 224455556666666666666666555431 11 23567777
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHhcccCcHHHHHHHHHhcchh---cCCCC-chHHHHHHH
Q 005136 525 RGLAESGYAKESINLFEEMEKTSI-TPNE----LTILSVLFACSHSGLVDKGLKYFNSMEPI---YNIKP-NGRHYTCVV 595 (712)
Q Consensus 525 ~~~~~~~~~~~A~~~~~~~~~~~~-~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~~~~~l~ 595 (712)
..|...|++++|++.+++..+... .++. .++..+...|...|++++|+..+++..+. .+..| ...++..++
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 888888888888888888765311 1111 36778888889999999999998887631 12224 466788899
Q ss_pred HHhhhcCChHHHHHHHHhC-C---C--CCC-HHHHHHHHHHHhhcCC---HHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 005136 596 DMLSRSGRLSEAEDFINSM-P---F--EPD-SNAWASLLSGCKTYKN---EQIAERAVKNLWKLAEEHPAGYVLLSNIYA 665 (712)
Q Consensus 596 ~~~~~~g~~~~A~~~~~~~-~---~--~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 665 (712)
.+|.+.|++++|...+++. . . .|. ...+..+...+...|+ .++|..++++. ...|....++..|+.+|.
T Consensus 272 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~ 350 (383)
T 3ulq_A 272 QIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYH 350 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHH
Confidence 9999999999999998876 1 1 222 2224556666888888 78888888776 334455678889999999
Q ss_pred hcCCchhHHHHHHHHHhC
Q 005136 666 SAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 666 ~~g~~~eA~~~~~~~~~~ 683 (712)
..|++++|.+++++.++.
T Consensus 351 ~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 351 ERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 999999999999998763
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.33 E-value=1.2e-12 Score=127.98 Aligned_cols=238 Identities=10% Similarity=0.106 Sum_probs=142.7
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHc------CC
Q 005136 416 DVSWSAIISGYLEHKQFDLVFAVFNEMLLS-------GEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKL------GF 482 (712)
Q Consensus 416 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~ 482 (712)
..++..+...+...|++++|..+|+++... ..+.....+..+...+...|++++|...+.+..+. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 346777888888888888888888887762 12223445556666666677777777666665542 10
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCCC-HHHH
Q 005136 483 PYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKT------SITPN-ELTI 555 (712)
Q Consensus 483 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~p~-~~~~ 555 (712)
.+ .....+..+...+...|++++|++.++++.+. +..|. ...+
T Consensus 107 ~~------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 107 HP------------------------------AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp CH------------------------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred Ch------------------------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 01 01223445555566666666666666665542 11222 2456
Q ss_pred HHHHHHhcccCcHHHHHHHHHhcchhc-----CCCC-chHHHHHHHHHhhhcCChHHHHHHHHhCC----------CCCC
Q 005136 556 LSVLFACSHSGLVDKGLKYFNSMEPIY-----NIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSMP----------FEPD 619 (712)
Q Consensus 556 ~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~ 619 (712)
..+...+...|++++|+.+++++.... +..| ....+..++.+|...|++++|...++++. ..+.
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 666777777788888877777765321 1133 35567778888888888888888877651 1111
Q ss_pred -------HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 620 -------SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 620 -------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
...+......+...+.+.++...++++....|..+.++..++.+|.+.|++++|.+++++.++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1112222333445667777788888888888888999999999999999999999999988763
No 73
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.32 E-value=1.2e-10 Score=113.14 Aligned_cols=216 Identities=11% Similarity=0.088 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-------ccCch-------HHHHHHHHHHHHcCCCCchhhHHHHHHHHHh
Q 005136 433 DLVFAVFNEMLLSGEIPNKSTFSSVLCASA-------SVASL-------EKGKDLHGKIIKLGFPYDVFLGTALTDTYAK 498 (712)
Q Consensus 433 ~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 498 (712)
++|...|++.+... +-+...+..+...+. ..|++ ++|..++++..+.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45555666555531 233344444444332 23443 4555555555542112233444555555555
Q ss_pred cCChHHHHHHhccCCC--C-Ccc-hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHh-cccCcHHHHHH
Q 005136 499 SGDIESSRRVFDRMPD--K-NEI-SWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFAC-SHSGLVDKGLK 573 (712)
Q Consensus 499 ~g~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~a~~ 573 (712)
.|++++|..+|+++.+ | +.. .|..++..+.+.|++++|..+|++.++.. +++...|....... ...|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555554432 1 122 45555555555555555555555555421 11222222222111 12355555555
Q ss_pred HHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-C---CCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 005136 574 YFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-P---FEP--DSNAWASLLSGCKTYKNEQIAERAVKNL 646 (712)
Q Consensus 574 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 646 (712)
+|++..+. .| +...+..++..+.+.|++++|..+|++. . ..| ....|..++......|+.+.|..+++++
T Consensus 191 ~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 191 IFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55554422 23 3444455555555555555555555544 1 122 2334444444444455555555555555
Q ss_pred hccCCCC
Q 005136 647 WKLAEEH 653 (712)
Q Consensus 647 ~~~~p~~ 653 (712)
.+..|++
T Consensus 268 ~~~~p~~ 274 (308)
T 2ond_A 268 FTAFREE 274 (308)
T ss_dssp HHHTTTT
T ss_pred HHHcccc
Confidence 5555543
No 74
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.29 E-value=6.3e-10 Score=108.13 Aligned_cols=213 Identities=8% Similarity=-0.015 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHHH-------hcCCh-------HHHHHHhccCCC---C-CcchHHHHHHHHHH
Q 005136 468 EKGKDLHGKIIKLGFPYDVFLGTALTDTYA-------KSGDI-------ESSRRVFDRMPD---K-NEISWTVMVRGLAE 529 (712)
Q Consensus 468 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~l~~~~~~ 529 (712)
++|...++++.+.. +.++..+..++..+. +.|++ ++|..+|++..+ | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666676666642 455666666666654 34665 778877776543 2 34467777777888
Q ss_pred cCChHHHHHHHHHHHHcCCCCCH-H-HHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhh-hcCChH
Q 005136 530 SGYAKESINLFEEMEKTSITPNE-L-TILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLS-RSGRLS 605 (712)
Q Consensus 530 ~~~~~~A~~~~~~~~~~~~~p~~-~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~-~~g~~~ 605 (712)
.|++++|.++|+++++ +.|+. . .|..++..+.+.|++++|..+|++..+ ..| +...|...+.... ..|+++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT---STTCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHcCCHH
Confidence 8888888888888877 45543 2 677777777778888888888887763 233 4444444333322 257888
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhcc---CCC-CCchHHHHHHHHHhcCCchhHHHHHHH
Q 005136 606 EAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKL---AEE-HPAGYVLLSNIYASAGRWIDAMNVRKL 679 (712)
Q Consensus 606 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~eA~~~~~~ 679 (712)
+|..+|++. ...| +...|..++..+...|+.++|..+++++++. .|+ +..++..++..+.+.|+.++|..++++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888776 2223 4666777777777788888888888888774 343 556777778888888888888888888
Q ss_pred HHhCCCc
Q 005136 680 MTEKGLR 686 (712)
Q Consensus 680 ~~~~~~~ 686 (712)
+.+..+.
T Consensus 267 a~~~~p~ 273 (308)
T 2ond_A 267 RFTAFRE 273 (308)
T ss_dssp HHHHTTT
T ss_pred HHHHccc
Confidence 7776543
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.28 E-value=7.1e-10 Score=111.40 Aligned_cols=154 Identities=9% Similarity=-0.035 Sum_probs=65.9
Q ss_pred HHHHhccCChhhHHHHhhcCCC----CCc----ccHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCH----HHHHHHH
Q 005136 392 IGGYGLNGQMEEAKELFDNMPK----RND----VSWSAIISGYLEHKQFDLVFAVFNEMLLSGE-IPNK----STFSSVL 458 (712)
Q Consensus 392 ~~~~~~~~~~~~a~~~~~~~~~----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-~p~~----~~~~~ll 458 (712)
...+...|++++|...+++... .+. .+++.+...+...|++++|...+++...... .++. .++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3344455666666555544221 111 1334444555555555555555555443110 0111 1233334
Q ss_pred HHHhccCchHHHHHHHHHHHHc----CCC--C-chhhHHHHHHHHHhcCChHHHHHHhccCCC--C------CcchHHHH
Q 005136 459 CASASVASLEKGKDLHGKIIKL----GFP--Y-DVFLGTALTDTYAKSGDIESSRRVFDRMPD--K------NEISWTVM 523 (712)
Q Consensus 459 ~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~------~~~~~~~l 523 (712)
..+...|++++|...+.+..+. +.. | ....+..+...+...|++++|...+++... + ....+..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 4445555555555555554431 111 1 122333344444555555555555444321 0 01123344
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 005136 524 VRGLAESGYAKESINLFEEMEK 545 (712)
Q Consensus 524 ~~~~~~~~~~~~A~~~~~~~~~ 545 (712)
...+...|++++|...+++...
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~ 202 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLEN 202 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 4444455555555555554443
No 76
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.27 E-value=2.5e-11 Score=125.56 Aligned_cols=179 Identities=12% Similarity=0.033 Sum_probs=155.3
Q ss_pred hHHHHHHhccCC---CCCcchHHHHHHHHHHcCCh-HHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcccCcHHHHHHHHH
Q 005136 502 IESSRRVFDRMP---DKNEISWTVMVRGLAESGYA-KESINLFEEMEKTSITPN-ELTILSVLFACSHSGLVDKGLKYFN 576 (712)
Q Consensus 502 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~ 576 (712)
++++...++... ..+...+..+...+...|++ ++|++.|++..+. .|+ ...+..+..+|...|++++|++.|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555555443 34566788899999999999 9999999999984 564 6789999999999999999999999
Q ss_pred hcchhcCCCCchHHHHHHHHHhhhc---------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhc--------CCHH
Q 005136 577 SMEPIYNIKPNGRHYTCVVDMLSRS---------GRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTY--------KNEQ 637 (712)
Q Consensus 577 ~~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------g~~~ 637 (712)
++. .+.|+...+..++.+|... |++++|+..+++. ...| +...|..+..+|... |+++
T Consensus 162 ~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 998 4578888999999999999 9999999999987 4445 477888888888888 9999
Q ss_pred HHHHHHHHHhccCC---CCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 638 IAERAVKNLWKLAE---EHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 638 ~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
+|+..++++++++| +++.++..++.+|...|++++|++.+++.++..+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999 9999999999999999999999999999988653
No 77
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.27 E-value=1.4e-10 Score=116.92 Aligned_cols=228 Identities=10% Similarity=0.033 Sum_probs=148.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCchHHHHHHHHHHHHc--CCC----CchhhHHHH
Q 005136 424 SGYLEHKQFDLVFAVFNEMLLS----GEIP-NKSTFSSVLCASASVASLEKGKDLHGKIIKL--GFP----YDVFLGTAL 492 (712)
Q Consensus 424 ~~~~~~~~~~~a~~~~~~~~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~----~~~~~~~~l 492 (712)
..+...|++++|...|++.... +-.+ ...++..+...+...|+++.|...+.+..+. ... ....++..+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3344444444445555554432 1111 1234444555555555666555555555432 110 112355566
Q ss_pred HHHHHhcCChHHHHHHhccCCC-----CC----cchHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHH
Q 005136 493 TDTYAKSGDIESSRRVFDRMPD-----KN----EISWTVMVRGLAESGYAKESINLFEEMEKT----SITP-NELTILSV 558 (712)
Q Consensus 493 ~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p-~~~~~~~l 558 (712)
..+|...|++++|...+++..+ ++ ..++..+...|...|++++|++.+++..+. +..| ...++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 6677777777777777766541 11 135777888899999999999999888762 2323 34668888
Q ss_pred HHHhcccCcHHHHHHHHHhcchhcCC--CC-chHHHHHHHHHhhhcCC---hHHHHHHHHhCCCCCC-HHHHHHHHHHHh
Q 005136 559 LFACSHSGLVDKGLKYFNSMEPIYNI--KP-NGRHYTCVVDMLSRSGR---LSEAEDFINSMPFEPD-SNAWASLLSGCK 631 (712)
Q Consensus 559 ~~~~~~~g~~~~a~~~~~~~~~~~~~--~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~~~ 631 (712)
...+...|++++|...+++......- .| ....+..++..+...|+ .++|..++++....|+ ...+..+...|.
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 350 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYH 350 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 88999999999999999887632111 12 23346678889999999 8999999999865444 445667777799
Q ss_pred hcCCHHHHHHHHHHHhccCC
Q 005136 632 TYKNEQIAERAVKNLWKLAE 651 (712)
Q Consensus 632 ~~g~~~~a~~~~~~~~~~~p 651 (712)
..|++++|...+++++++..
T Consensus 351 ~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 351 ERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999987643
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.27 E-value=1.4e-10 Score=107.37 Aligned_cols=205 Identities=10% Similarity=0.056 Sum_probs=155.9
Q ss_pred CCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCC---CCcchHHHHHH
Q 005136 449 PNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPD---KNEISWTVMVR 525 (712)
Q Consensus 449 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 525 (712)
.++..+......+...|++++|...+.+..+...+++...+..+..++...|++++|...+++..+ .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456777888888999999999999999999876546777777788999999999999999988763 34457888889
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCH--------HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCc---hHHHHHH
Q 005136 526 GLAESGYAKESINLFEEMEKTSITPNE--------LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPN---GRHYTCV 594 (712)
Q Consensus 526 ~~~~~~~~~~A~~~~~~~~~~~~~p~~--------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l 594 (712)
.+...|++++|++.+++..+ ..|+. ..|..+...+...|++++|++.|+++. ...|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHH
Confidence 99999999999999999988 45543 346677778888999999999999988 34665 5677788
Q ss_pred HHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 005136 595 VDMLSRSGRLSEAEDFINSM-PF-EPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYA 665 (712)
Q Consensus 595 ~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 665 (712)
+.+|...|+. .++++ .. ..+...+.... ....+.+++|...++++++++|+++.+...|..+..
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 8888766543 22332 11 12233333322 345677899999999999999999988888776654
No 79
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.21 E-value=2.9e-11 Score=118.10 Aligned_cols=238 Identities=10% Similarity=0.082 Sum_probs=148.9
Q ss_pred ceeeHHHHHHHHhccCChhhHHHHhhcCCC--------C---CcccHHHHHHHHHhcCChhHHHHHHHHHHHC------C
Q 005136 384 HVVSWNSMIGGYGLNGQMEEAKELFDNMPK--------R---NDVSWSAIISGYLEHKQFDLVFAVFNEMLLS------G 446 (712)
Q Consensus 384 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------g 446 (712)
...++..+...+...|++++|+..++++.+ . ...++..+...|...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 567788999999999999999999988764 2 2446888999999999999999999998764 2
Q ss_pred CCC-CHHHHHHHHHHHhccCchHHHHHHHHHHHHc------CCCC-chhhHHHHHHHHHhcCChHHHHHHhccCCCCCcc
Q 005136 447 EIP-NKSTFSSVLCASASVASLEKGKDLHGKIIKL------GFPY-DVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEI 518 (712)
Q Consensus 447 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 518 (712)
..| ....+..+...+...|++++|...+.++.+. +..| ...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~------------------------------- 154 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK------------------------------- 154 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH-------------------------------
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHH-------------------------------
Confidence 223 3556777888888999999999988887653 1111 122
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHhcccCcHHHHHHHHHhcchhc------CCC
Q 005136 519 SWTVMVRGLAESGYAKESINLFEEMEKT------SITPN-ELTILSVLFACSHSGLVDKGLKYFNSMEPIY------NIK 585 (712)
Q Consensus 519 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~ 585 (712)
.+..+...+...|++++|++.++++.+. +..|. ..++..+...+...|++++|...++++.+.. ...
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 3444455555555555555555555442 11222 2345566666666677777776666665210 111
Q ss_pred C-c------hHHHHHHHHHhhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC
Q 005136 586 P-N------GRHYTCVVDMLSRSGRLSEAEDFINSMP-FEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEE 652 (712)
Q Consensus 586 p-~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 652 (712)
+ . ...+..+...+...+.+.+|...++... ..|+ ...+..+...|...|++++|...+++++++.|+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1 1 1122223333445556666666666663 2333 566777888899999999999999999988775
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.19 E-value=9.3e-10 Score=110.62 Aligned_cols=163 Identities=11% Similarity=0.046 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcC--CCC-chHH
Q 005136 519 SWTVMVRGLAESGYAKESINLFEEMEKT----SITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYN--IKP-NGRH 590 (712)
Q Consensus 519 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~p-~~~~ 590 (712)
+++.+...|...|++++|++.+++..+. +-.+ ...++..+..+|...|++++|+..+++...... ..| ...+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 4555666677777777777777666542 1111 124566777778888888888888877763110 233 4667
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC----CC--CCC-HHHHHHHHHHHhhcCC---HHHHHHHHHHHhccCCCCCchHHHH
Q 005136 591 YTCVVDMLSRSGRLSEAEDFINSM----PF--EPD-SNAWASLLSGCKTYKN---EQIAERAVKNLWKLAEEHPAGYVLL 660 (712)
Q Consensus 591 ~~~l~~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l 660 (712)
+..++.+|.+.|++++|...+++. .. .|. ...+..+...+...++ .++|...+++. ...|+....+..+
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~l 342 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHH
Confidence 778888888888888888888875 11 233 2334444445667777 77777777762 2334445678889
Q ss_pred HHHHHhcCCchhHHHHHHHHHh
Q 005136 661 SNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 661 ~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
+.+|...|++++|.+++++..+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999998765
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.19 E-value=8.2e-10 Score=98.19 Aligned_cols=166 Identities=13% Similarity=0.048 Sum_probs=140.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHhccCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 005136 487 FLGTALTDTYAKSGDIESSRRVFDRMPD---KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACS 563 (712)
Q Consensus 487 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 563 (712)
..+..+...+...|++++|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4456677788899999999999999874 355678888999999999999999999998852 335677888889999
Q ss_pred ccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHHHH
Q 005136 564 HSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFE-PDSNAWASLLSGCKTYKNEQIAE 640 (712)
Q Consensus 564 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~ 640 (712)
..|++++|.+.++++... .| +...+..++.++...|++++|...++++ ... .+...+..+...+...|++++|.
T Consensus 88 ~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA---NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc---CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999998743 44 6788899999999999999999999987 333 35778888888899999999999
Q ss_pred HHHHHHhccCCCCCch
Q 005136 641 RAVKNLWKLAEEHPAG 656 (712)
Q Consensus 641 ~~~~~~~~~~p~~~~~ 656 (712)
..++++++..|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999999887643
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.19 E-value=2.2e-10 Score=115.16 Aligned_cols=304 Identities=9% Similarity=0.060 Sum_probs=214.0
Q ss_pred CCCcHHHHHHHHHHH--HhcCChHHHHHHHHhhhcCCC-----CceeeHHHHHHH--HhccCChhhHH---------HHh
Q 005136 347 IEKDVFISNALIDLY--SKCGETKDGRLVFDSIVEKDV-----AHVVSWNSMIGG--YGLNGQMEEAK---------ELF 408 (712)
Q Consensus 347 ~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~--~~~~~~~~~a~---------~~~ 408 (712)
..|+..+-+.|-..| ...+++++|..+++++..... .+...|-.++.. ....+...... +.+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 345666666676676 889999999999998765321 122233333322 11112222222 444
Q ss_pred hcCC---CCCc-----ccHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCchHHHHHHHH
Q 005136 409 DNMP---KRND-----VSWSAIISGYLEHKQFDLVFAVFNEMLLSGE-IPN----KSTFSSVLCASASVASLEKGKDLHG 475 (712)
Q Consensus 409 ~~~~---~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~ 475 (712)
+.+. .+.. ..+...+..+...|++++|...|++...... .++ ..++..+...+...|+++.|...+.
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 4432 2211 1244456677899999999999999876421 122 3567778889999999999999999
Q ss_pred HHHHc--CCC----CchhhHHHHHHHHHhcCChHHHHHHhccCCC-----CC----cchHHHHHHHHHHcCChHHHHHHH
Q 005136 476 KIIKL--GFP----YDVFLGTALTDTYAKSGDIESSRRVFDRMPD-----KN----EISWTVMVRGLAESGYAKESINLF 540 (712)
Q Consensus 476 ~~~~~--~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~ 540 (712)
+..+. ... ....++..+..+|...|++++|.+.+++..+ ++ ..++..+...|...|++++|++.+
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 98763 111 1245677889999999999999999987652 22 236778899999999999999999
Q ss_pred HHHHHc----CCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCC--CC-chHHHHHHHHHhhhcCC---hHHHHHH
Q 005136 541 EEMEKT----SITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNI--KP-NGRHYTCVVDMLSRSGR---LSEAEDF 610 (712)
Q Consensus 541 ~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~p-~~~~~~~l~~~~~~~g~---~~~A~~~ 610 (712)
++..+. +.+....++..+...+.+.|++++|...+++......- .| ....+..+...+...++ ..+|+..
T Consensus 246 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 998871 22223567888899999999999999999988743222 12 24456777788888888 8999999
Q ss_pred HHhCCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccC
Q 005136 611 INSMPFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLA 650 (712)
Q Consensus 611 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 650 (712)
+++....|+ ...+..+...|...|++++|...++++++..
T Consensus 326 ~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 326 FEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999765444 3455667777999999999999999987643
No 83
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.17 E-value=3.1e-09 Score=99.52 Aligned_cols=138 Identities=9% Similarity=0.006 Sum_probs=58.9
Q ss_pred HHHhccCChhhHHHHhhcCCCCCcc-cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHH
Q 005136 393 GGYGLNGQMEEAKELFDNMPKRNDV-SWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGK 471 (712)
Q Consensus 393 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 471 (712)
+-..-.|.+..++.-...+...+.. ...-+.++|...|+++.. ..-.|....+..+...+ ..+ +.
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~ 86 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NI 86 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CC
T ss_pred HHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HH
Confidence 3444567777776655544332222 222234556655655431 01223332333332222 111 33
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCC-----CcchHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005136 472 DLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDK-----NEISWTVMVRGLAESGYAKESINLFEEMEK 545 (712)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 545 (712)
..+++..+.+ .++......+..++...|++++|.+++.+.... +...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 87 ~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 87 EELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp HHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4444333322 222333334444555555555555555544221 222334444455555555555555555544
No 84
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.16 E-value=6.3e-10 Score=102.42 Aligned_cols=64 Identities=13% Similarity=0.061 Sum_probs=56.3
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHhcCCchhHHHHHHHHHhCCCccC
Q 005136 625 SLLSGCKTYKNEQIAERAVKNLWKLAEEHP---AGYVLLSNIYASAGRWIDAMNVRKLMTEKGLRKS 688 (712)
Q Consensus 625 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~ 688 (712)
.+...+...|++++|+..++++++..|+++ .++..++.++.+.|++++|++.++++...++...
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 345568899999999999999999999986 6799999999999999999999999988765444
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.16 E-value=6.5e-11 Score=114.01 Aligned_cols=187 Identities=9% Similarity=0.057 Sum_probs=115.6
Q ss_pred HHhcCChHHHHHHhccCCC-----CC----cchHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC--HHHHHHHHHH
Q 005136 496 YAKSGDIESSRRVFDRMPD-----KN----EISWTVMVRGLAESGYAKESINLFEEMEKTSI---TPN--ELTILSVLFA 561 (712)
Q Consensus 496 ~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~p~--~~~~~~l~~~ 561 (712)
|...|++++|...|.+... .+ ..+|+.+..+|...|++++|+..+++.++... .+. ..++..+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4445555555555544321 01 23566677777777777777777777665210 111 2456777778
Q ss_pred hccc-CcHHHHHHHHHhcchhcCCCCc----hHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC---H-----HHHHHHH
Q 005136 562 CSHS-GLVDKGLKYFNSMEPIYNIKPN----GRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD---S-----NAWASLL 627 (712)
Q Consensus 562 ~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~-----~~~~~l~ 627 (712)
|... |++++|+..|++..+...-..+ ..++..++.+|.+.|++++|+..+++. ...|+ . ..+..+.
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 8885 8888888888887632110111 346778888888899999999888876 22222 1 2456666
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCCCCch-----HHHHHHHHH--hcCCchhHHHHHHHHHh
Q 005136 628 SGCKTYKNEQIAERAVKNLWKLAEEHPAG-----YVLLSNIYA--SAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 628 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~eA~~~~~~~~~ 682 (712)
.++...|++++|...++++++++|+.+.. +..++..+. ..+++++|+..++++.+
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 77888899999999999999888886543 344555554 45678888887765544
No 86
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.14 E-value=2.4e-11 Score=103.52 Aligned_cols=136 Identities=10% Similarity=0.036 Sum_probs=68.4
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHH
Q 005136 529 ESGYAKESINLFEEMEKTSITPNE-LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSE 606 (712)
Q Consensus 529 ~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 606 (712)
..|++++|++.+++... ..|+. ..+..+...|...|++++|++.|+++.+ +.| +...+..++.+|.+.|++++
T Consensus 9 ~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 9 SKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCchHH
Confidence 34445555555544433 22221 2333444555555555555555555542 244 45555555555555555555
Q ss_pred HHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHH-HHHHHhccCCCCCchHHHHHHHHHhcCC
Q 005136 607 AEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAER-AVKNLWKLAEEHPAGYVLLSNIYASAGR 669 (712)
Q Consensus 607 A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 669 (712)
|+..|++. ...|+ ...+..+...+...|++++|.+ +++++++++|+++.++...+.++...|+
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 55555554 33332 4445555555555555544333 3455666666666655555555555553
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.14 E-value=7e-10 Score=104.98 Aligned_cols=62 Identities=8% Similarity=-0.022 Sum_probs=45.7
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCCC---CchHHHHHHHHHhc----------CCchhHHHHHHHHHhCCC
Q 005136 624 ASLLSGCKTYKNEQIAERAVKNLWKLAEEH---PAGYVLLSNIYASA----------GRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 624 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~eA~~~~~~~~~~~~ 685 (712)
..+...|...|++++|+..++++++..|++ +.++..++.+|... |++++|+..++++++..+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 445566777888888888888888887774 34777788887766 777888888888777543
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.13 E-value=2.9e-10 Score=109.11 Aligned_cols=217 Identities=11% Similarity=0.098 Sum_probs=117.7
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHc------CC-CCchhhHHHHHHHHHhcCChHHHHHH
Q 005136 436 FAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKL------GF-PYDVFLGTALTDTYAKSGDIESSRRV 508 (712)
Q Consensus 436 ~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 508 (712)
++++.+......+....++..+...+...|++++|...+.++.+. +. +....+
T Consensus 28 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-------------------- 87 (283)
T 3edt_B 28 LEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAAT-------------------- 87 (283)
T ss_dssp HHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH--------------------
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHH--------------------
Confidence 444444443322233456666777777777777777777766543 11 112233
Q ss_pred hccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchh
Q 005136 509 FDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKT------SITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPI 581 (712)
Q Consensus 509 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 581 (712)
+..+...+...|++++|++.++++.+. .-.| ....+..+...+...|++++|...++++...
T Consensus 88 -----------~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 88 -----------LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp -----------HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344444455555555555555544432 0112 2345566666677777777777777666522
Q ss_pred c-----CCCC-chHHHHHHHHHhhhcCChHHHHHHHHhCC----------CCCC-HHHHHHHHHHHhh------cCCHHH
Q 005136 582 Y-----NIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSMP----------FEPD-SNAWASLLSGCKT------YKNEQI 638 (712)
Q Consensus 582 ~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p~-~~~~~~l~~~~~~------~g~~~~ 638 (712)
. .-.| ...++..++.+|...|++++|...+++.. ..+. ...+..+...+.. ...+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (283)
T 3edt_B 157 YATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGE 236 (283)
T ss_dssp HHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 0 1133 35566677777777777777777776641 1121 1222222222222 223444
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 639 AERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 639 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
+...++......|..+.++..++.+|...|++++|+.++++.++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 237 YGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444444444455666778999999999999999999999988763
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.13 E-value=1.1e-10 Score=99.48 Aligned_cols=125 Identities=7% Similarity=-0.063 Sum_probs=106.2
Q ss_pred HHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcC
Q 005136 558 VLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYK 634 (712)
Q Consensus 558 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 634 (712)
|...+...|++++|+..++... ...| +...+..++.+|.+.|++++|++.|++. ...| +...|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4556778899999999999887 3456 4566778999999999999999999997 4555 4788888999999999
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHH-HHHHHhCCC
Q 005136 635 NEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNV-RKLMTEKGL 685 (712)
Q Consensus 635 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~-~~~~~~~~~ 685 (712)
++++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++.++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P 131 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP 131 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999999999987775 588887654
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.12 E-value=2.9e-09 Score=99.72 Aligned_cols=175 Identities=10% Similarity=0.019 Sum_probs=106.1
Q ss_pred HHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcch
Q 005136 505 SRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFNSMEP 580 (712)
Q Consensus 505 A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 580 (712)
|...|++.. .++...+..+..++...|++++|++++.+.+..|-.+ +...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 445555443 2334444566667777777777777777766543212 334556666777777777777777777763
Q ss_pred hcCCCC-----chHHHHHHHHH--hhhcC--ChHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhcc-
Q 005136 581 IYNIKP-----NGRHYTCVVDM--LSRSG--RLSEAEDFINSM-PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKL- 649 (712)
Q Consensus 581 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 649 (712)
. .| +..+...|+.+ ....| +..+|..+|+++ ...|+..+...++.++.+.|++++|++.++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 2 55 24444455444 33333 677777777776 33444233333344667777777777777766654
Q ss_pred ---------CCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 650 ---------AEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 650 ---------~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
+|+++.++..++.+....|+ +|.++++++++..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 36677777777766666775 6777777777654
No 91
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.11 E-value=1.6e-10 Score=124.07 Aligned_cols=163 Identities=15% Similarity=0.199 Sum_probs=131.6
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 005136 485 DVFLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPN-ELTILSVLF 560 (712)
Q Consensus 485 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 560 (712)
+...++.|..+|.+.|++++|.+.|++.. ..+...|..+..+|.+.|++++|++.|++.++ +.|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 45567777777888888888888887765 23456788888888899999999999998888 5565 467888888
Q ss_pred HhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHH
Q 005136 561 ACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQ 637 (712)
Q Consensus 561 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~ 637 (712)
++...|++++|++.|++..+ +.| +...+..++.+|.+.|++++|++.|++. ...|+ ...+..+...+...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 89999999999999988873 367 6788889999999999999999999887 45565 677888888899999999
Q ss_pred HHHHHHHHHhccCCC
Q 005136 638 IAERAVKNLWKLAEE 652 (712)
Q Consensus 638 ~a~~~~~~~~~~~p~ 652 (712)
+|++.+++++++.|+
T Consensus 163 ~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 163 DYDERMKKLVSIVAD 177 (723)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh
Confidence 999999988876543
No 92
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.10 E-value=6.9e-08 Score=96.75 Aligned_cols=273 Identities=9% Similarity=-0.010 Sum_probs=144.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHh----hHHHHHHHHhcccchHHHHHHHHHHHHhCCCC-C----ccHHHHH
Q 005136 155 AICGFVQNGFSFEALKLFLKLLESGVKPNEV----TFSSICKACAEINDFRLGLSVFGLIFKAGFEK-H----VSVCNSL 225 (712)
Q Consensus 155 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l 225 (712)
....+...|++++|...+++........+.. .+..+...+...|+++.|...++......... + ..++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3445566788888888888776653222221 34555666777788888888887776532111 1 1234556
Q ss_pred HHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCC----CceeHHHHHHHHHhcCChhHHH
Q 005136 226 ITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPER----NEVSWSVMIARYNQSGYPEEAF 301 (712)
Q Consensus 226 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~ 301 (712)
...+...|++++|...+++. ..+......+ ...++..+...+...|++++|.
T Consensus 100 a~~~~~~G~~~~A~~~~~~a------------------------l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 155 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKA------------------------FQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE 155 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------------------------HHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH------------------------HHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHH
Confidence 66677778888887777632 2233232222 1224455666777788888888
Q ss_pred HHHHHHHhCCCC--C--CHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCc--HHHHH----HHHHHHHhcCChHHHH
Q 005136 302 RLFRQMTRYSFK--P--NTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKD--VFISN----ALIDLYSKCGETKDGR 371 (712)
Q Consensus 302 ~~~~~m~~~~~~--p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~g~~~~A~ 371 (712)
..+++.....-. + ...++..+...+...|++++|...++........++ ..... ..+..+...|++++|.
T Consensus 156 ~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 235 (373)
T 1hz4_A 156 ASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAA 235 (373)
T ss_dssp HHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHH
Confidence 888776542211 1 223455555556666667776666666654311111 11111 2223355666666666
Q ss_pred HHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHC----CC
Q 005136 372 LVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLS----GE 447 (712)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----g~ 447 (712)
..+++.....+.+... ....+..+...+...|++++|...+++.... |.
T Consensus 236 ~~~~~a~~~~~~~~~~---------------------------~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~ 288 (373)
T 1hz4_A 236 NWLRHTAKPEFANNHF---------------------------LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRL 288 (373)
T ss_dssp HHHHHSCCCCCTTCGG---------------------------GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCCCCCCcchh---------------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence 6666655433211000 0002334445555555666556666655432 22
Q ss_pred CCCH-HHHHHHHHHHhccCchHHHHHHHHHHH
Q 005136 448 IPNK-STFSSVLCASASVASLEKGKDLHGKII 478 (712)
Q Consensus 448 ~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~ 478 (712)
.++. ..+..+..++...|+.++|...+....
T Consensus 289 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 289 MSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 2222 134444455556666666666665554
No 93
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.10 E-value=1.2e-10 Score=98.52 Aligned_cols=103 Identities=13% Similarity=0.032 Sum_probs=94.1
Q ss_pred CCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHH
Q 005136 583 NIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVL 659 (712)
Q Consensus 583 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 659 (712)
.+.| +...+..++..+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 5677 6778899999999999999999999998 4455 47888899999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 660 LSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 660 l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
++.+|.+.|++++|+..+++.++...
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999988653
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.06 E-value=2.3e-09 Score=89.44 Aligned_cols=127 Identities=15% Similarity=0.223 Sum_probs=90.2
Q ss_pred HHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHh
Q 005136 555 ILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PF-EPDSNAWASLLSGCK 631 (712)
Q Consensus 555 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~ 631 (712)
+..+...+...|++++|..+++++.+. .| +...+..++..+...|++++|...++++ .. ..+...+..+...+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc---CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 344445555555666666666555422 23 4555666666677777777777777665 22 234556667777788
Q ss_pred hcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 632 TYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 632 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
..|++++|...++++++..|+++.++..++.++...|++++|..+++++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 88888889999988888888888888999999999999999999998887754
No 95
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.06 E-value=7.8e-09 Score=99.40 Aligned_cols=212 Identities=9% Similarity=-0.009 Sum_probs=129.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 005136 423 ISGYLEHKQFDLVFAVFNEMLLS----GEIPN-KSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYA 497 (712)
Q Consensus 423 ~~~~~~~~~~~~a~~~~~~~~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 497 (712)
+..|...|++++|...|.+.... |-+++ ..+|..+...|...|++++|...+.+..+. +.
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---------------~~ 108 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI---------------FT 108 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------HH
Confidence 55666677777777777765442 21111 345556666666666666666666555432 12
Q ss_pred hcCChHHHHHHhccCCCCCcchHHHHHHHHHHc-CChHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHhcccCcHH
Q 005136 498 KSGDIESSRRVFDRMPDKNEISWTVMVRGLAES-GYAKESINLFEEMEKTSITPN-------ELTILSVLFACSHSGLVD 569 (712)
Q Consensus 498 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~ 569 (712)
..|+...+. .+++.+...|... |++++|+..|++..+. .|+ ..++..+...+...|+++
T Consensus 109 ~~g~~~~~a-----------~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 109 HRGQFRRGA-----------NFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HTTCHHHHH-----------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HcCCHHHHH-----------HHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 223322221 2456677777775 8888888888887762 221 245777788888888888
Q ss_pred HHHHHHHhcchhcCCCCch-----HHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHH------HHHHHHHHHh--hcCC
Q 005136 570 KGLKYFNSMEPIYNIKPNG-----RHYTCVVDMLSRSGRLSEAEDFINSM-PFEPDSN------AWASLLSGCK--TYKN 635 (712)
Q Consensus 570 ~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~------~~~~l~~~~~--~~g~ 635 (712)
+|+..|+++.+...-.+.. ..+..++.++...|++++|...+++. ...|+.. .+..+...+. ..++
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~ 255 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ 255 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence 8888888877331111111 15677788888889999999988887 4445421 2334444443 4567
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHH
Q 005136 636 EQIAERAVKNLWKLAEEHPAGYVLLSN 662 (712)
Q Consensus 636 ~~~a~~~~~~~~~~~p~~~~~~~~l~~ 662 (712)
+++|...++++..++|.+..++..+-.
T Consensus 256 ~~~A~~~~~~~~~l~~~~~~~~~~~k~ 282 (292)
T 1qqe_A 256 LSEHCKEFDNFMRLDKWKITILNKIKE 282 (292)
T ss_dssp HHHHHHHHTTSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCccHHHHHHHHHHHHH
Confidence 888888888888888775544444433
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.05 E-value=2e-09 Score=101.78 Aligned_cols=185 Identities=9% Similarity=0.029 Sum_probs=122.7
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHhccCCC--C-C---cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----HHH
Q 005136 485 DVFLGTALTDTYAKSGDIESSRRVFDRMPD--K-N---EISWTVMVRGLAESGYAKESINLFEEMEKTSITPN----ELT 554 (712)
Q Consensus 485 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~----~~~ 554 (712)
+...+..+...+.+.|++++|...|+.+.+ | + ...+..+..++...|++++|+..|+++++. .|+ ...
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHHH
Confidence 344445555566666777777766666552 2 2 334566666777777777777777777763 232 234
Q ss_pred HHHHHHHhcc--------cCcHHHHHHHHHhcchhcCCCC-chHHH-----------------HHHHHHhhhcCChHHHH
Q 005136 555 ILSVLFACSH--------SGLVDKGLKYFNSMEPIYNIKP-NGRHY-----------------TCVVDMLSRSGRLSEAE 608 (712)
Q Consensus 555 ~~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~p-~~~~~-----------------~~l~~~~~~~g~~~~A~ 608 (712)
+..+..++.. .|++++|+..|+++.+. .| +.... ..++.+|.+.|++++|+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 5555666666 77777777777777643 33 22222 56788999999999999
Q ss_pred HHHHhC-CCCCC----HHHHHHHHHHHhhc----------CCHHHHHHHHHHHhccCCCCCc---hHHHHHHHHHhcCCc
Q 005136 609 DFINSM-PFEPD----SNAWASLLSGCKTY----------KNEQIAERAVKNLWKLAEEHPA---GYVLLSNIYASAGRW 670 (712)
Q Consensus 609 ~~~~~~-~~~p~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~ 670 (712)
..++++ ...|+ ...+..+..+|... |++++|...++++++..|+++. +...+..++.+.|++
T Consensus 169 ~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 169 VTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp HHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHh
Confidence 999987 33333 45666677777655 8999999999999999999864 444555555555555
Q ss_pred hhHH
Q 005136 671 IDAM 674 (712)
Q Consensus 671 ~eA~ 674 (712)
+++.
T Consensus 249 ~~~~ 252 (261)
T 3qky_A 249 EGDA 252 (261)
T ss_dssp HTCT
T ss_pred hhhh
Confidence 4443
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.04 E-value=4.6e-09 Score=100.56 Aligned_cols=175 Identities=10% Similarity=-0.008 Sum_probs=142.1
Q ss_pred HHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchh
Q 005136 503 ESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPI 581 (712)
Q Consensus 503 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 581 (712)
+.....+......+...+..+...+...|++++|+..|+++.+ ..| +...+..+...+...|++++|...++++...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 3444455554445556677788889999999999999999998 456 4567888899999999999999999999843
Q ss_pred cCCCCchHHHH-HHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC--Cch
Q 005136 582 YNIKPNGRHYT-CVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH--PAG 656 (712)
Q Consensus 582 ~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~ 656 (712)
.|+..... .....+.+.++.++|...+++. ...| +...+..+...+...|++++|...++++++.+|++ +.+
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 56544333 3344467888889999988887 4445 47788888888999999999999999999999998 889
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 657 YVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 657 ~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
+..|+.++...|+.++|...+++.+.
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999999988764
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.04 E-value=7.7e-09 Score=93.91 Aligned_cols=163 Identities=7% Similarity=-0.043 Sum_probs=134.7
Q ss_pred CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccC----cHHHHHHHHHhcchhcCCCCchHH
Q 005136 515 KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSG----LVDKGLKYFNSMEPIYNIKPNGRH 590 (712)
Q Consensus 515 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~ 590 (712)
.++..+..+...|...+++++|++.|++..+.| +...+..+...|.. + ++++|.++|++..+ .-++..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~----~g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE----AGSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH----TTCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH----CCCHHH
Confidence 456667778888888899999999999988854 55677777777877 6 89999999999872 236778
Q ss_pred HHHHHHHhhh----cCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHhh----cCCHHHHHHHHHHHhccCCCCCchHH
Q 005136 591 YTCVVDMLSR----SGRLSEAEDFINSM-PFEPD---SNAWASLLSGCKT----YKNEQIAERAVKNLWKLAEEHPAGYV 658 (712)
Q Consensus 591 ~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~ 658 (712)
+..|+.+|.. .+++++|+.++++. ...|. ...+..+...|.. .++.++|..+++++.+. |.++.++.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 8889999887 88999999999987 44443 7778888888877 78999999999999988 77788999
Q ss_pred HHHHHHHhc-C-----CchhHHHHHHHHHhCCCc
Q 005136 659 LLSNIYASA-G-----RWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 659 ~l~~~~~~~-g-----~~~eA~~~~~~~~~~~~~ 686 (712)
.|+.+|... | ++++|+.++++..+.|.+
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 999999865 3 899999999999887753
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.02 E-value=6.4e-10 Score=120.41 Aligned_cols=147 Identities=12% Similarity=0.029 Sum_probs=75.3
Q ss_pred cchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHH
Q 005136 517 EISWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCV 594 (712)
Q Consensus 517 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 594 (712)
...+..+...+...|++++|++.++++.+ ..| +...+..+..++...|++++|+..|+++.+ +.| +...+..+
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~~~~~l 507 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLD---TFPGELAPKLAL 507 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HSTTCSHHHHHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHH
Confidence 33444555555555555555555555555 233 234455555555555555555555555542 234 44555555
Q ss_pred HHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 005136 595 VDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGR 669 (712)
Q Consensus 595 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 669 (712)
+.+|.+.|++++ ++.|++. ...| +...+..+..++...|++++|++.++++++++|+++.++..++.++...|+
T Consensus 508 g~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 508 AATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 555555555555 5555554 2233 244455555555555555555555555555555555555555555544443
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.01 E-value=3.7e-09 Score=92.94 Aligned_cols=159 Identities=9% Similarity=0.023 Sum_probs=119.2
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHH
Q 005136 519 SWTVMVRGLAESGYAKESINLFEEMEKTSITPN-ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDM 597 (712)
Q Consensus 519 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 597 (712)
.+..+...+...|++++|+..+++..+ ..|+ ...+..+...+...|++++|+..|+++... .|+......++..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~ 82 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKL 82 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHH
Confidence 344566677788888888888887766 3453 466777888888888888898888888743 3433333333322
Q ss_pred -hhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC--CchHHHHHHHHHhcCCchh
Q 005136 598 -LSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH--PAGYVLLSNIYASAGRWID 672 (712)
Q Consensus 598 -~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~e 672 (712)
+...+...+|...+++. ...|+ ...+..+...+...|++++|...++++++.+|+. +.++..++.++...|+.++
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 22333344577777776 44554 7788888888999999999999999999999885 5599999999999999999
Q ss_pred HHHHHHHHHh
Q 005136 673 AMNVRKLMTE 682 (712)
Q Consensus 673 A~~~~~~~~~ 682 (712)
|...+++.+.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998765
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.97 E-value=4.4e-09 Score=112.02 Aligned_cols=158 Identities=9% Similarity=0.055 Sum_probs=121.0
Q ss_pred cCChHHHHHHhccCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcccCcHHHHHHH
Q 005136 499 SGDIESSRRVFDRMPD---KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPN-ELTILSVLFACSHSGLVDKGLKY 574 (712)
Q Consensus 499 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~ 574 (712)
.|++++|...+++..+ .+...|..+...+...|++++|++.+++..+ ..|+ ...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999998774 3456788889999999999999999999988 4554 57788888999999999999999
Q ss_pred HHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhc---CCHHHHHHHHHHHhc
Q 005136 575 FNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTY---KNEQIAERAVKNLWK 648 (712)
Q Consensus 575 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~ 648 (712)
+++..+. .| +...+..++.+|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|.+.++++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9998843 56 6788999999999999999999999987 3344 467778888888888 999999999999999
Q ss_pred cCCCCCchHHHHH
Q 005136 649 LAEEHPAGYVLLS 661 (712)
Q Consensus 649 ~~p~~~~~~~~l~ 661 (712)
.+|++...+..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999888888777
No 102
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.97 E-value=3.2e-09 Score=86.98 Aligned_cols=102 Identities=13% Similarity=0.114 Sum_probs=72.8
Q ss_pred CCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHH
Q 005136 584 IKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLL 660 (712)
Q Consensus 584 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 660 (712)
+.| ....+...+..|.+.|++++|++.|++. ...| +...+..+..++...|++++|+..++++++++|+++.++..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 455 3556667777777777777777777765 3334 466666677777777777777777777777777777777777
Q ss_pred HHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 661 SNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 661 ~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
|.++...|++++|++.+++.++..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 7777777777777777777776543
No 103
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.95 E-value=1.6e-09 Score=91.70 Aligned_cols=102 Identities=13% Similarity=0.033 Sum_probs=86.4
Q ss_pred CCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHH
Q 005136 583 NIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVL 659 (712)
Q Consensus 583 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 659 (712)
.+.| +...+..++..+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 4456 6677788888899999999999999887 3344 57778888888889999999999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 660 LSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 660 l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
++.+|...|++++|++.+++.++..
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999888754
No 104
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.93 E-value=4e-09 Score=95.55 Aligned_cols=158 Identities=8% Similarity=-0.003 Sum_probs=106.1
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCCC---CcchHHH----------------HHHHHHHcCChHHHHHHHHHHHHcCCC
Q 005136 489 GTALTDTYAKSGDIESSRRVFDRMPDK---NEISWTV----------------MVRGLAESGYAKESINLFEEMEKTSIT 549 (712)
Q Consensus 489 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~----------------l~~~~~~~~~~~~A~~~~~~~~~~~~~ 549 (712)
.......+...|++++|...|++..+. +...|.. +..++...|++++|+..+++.++ +.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~ 84 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ--KA 84 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HC
Confidence 334455667788888888888877643 2334555 77778888888888888888877 44
Q ss_pred C-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCC--hHHHHHHHHhCCCCCCHH--HH
Q 005136 550 P-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGR--LSEAEDFINSMPFEPDSN--AW 623 (712)
Q Consensus 550 p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~p~~~--~~ 623 (712)
| +...+..+..++...|++++|+..|+++.+ +.| +...+..++.+|...|+ .+.+...+++.. .|++. .+
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~ 160 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYAR 160 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHH
Confidence 5 446677777788888888888888888773 366 57777778777765543 344555555553 33332 33
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCC
Q 005136 624 ASLLSGCKTYKNEQIAERAVKNLWKLAEE 652 (712)
Q Consensus 624 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 652 (712)
.....++...|++++|+..+++++++.|+
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 33444466677888888888888888886
No 105
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.92 E-value=2.2e-08 Score=91.21 Aligned_cols=127 Identities=9% Similarity=-0.080 Sum_probs=73.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHh
Q 005136 520 WTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDML 598 (712)
Q Consensus 520 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 598 (712)
+..+...+...|++++|++.+++. +.|+...+..+..++...|++++|+..|++.... .| +...+..++.+|
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHH
Confidence 334455556666666666666554 2445556666666666666666666666665522 33 455566666666
Q ss_pred hhcCChHHHHHHHHhC-CCCCC-----------------HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 005136 599 SRSGRLSEAEDFINSM-PFEPD-----------------SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH 653 (712)
Q Consensus 599 ~~~g~~~~A~~~~~~~-~~~p~-----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 653 (712)
...|++++|...+++. ...|+ ...+..+..++...|++++|...++++++..|++
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 6666666666666554 11111 2445555555666666666666666666666654
No 106
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.92 E-value=1.1e-08 Score=98.00 Aligned_cols=222 Identities=12% Similarity=0.043 Sum_probs=118.6
Q ss_pred hcCChhHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHc------CC-CCcHHHHHHHH
Q 005136 293 QSGYPEEAFRLFRQMTR-------YSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKI------GI-EKDVFISNALI 358 (712)
Q Consensus 293 ~~~~~~~a~~~~~~m~~-------~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~ 358 (712)
..|++++|+..|++..+ ...+....++..+...+...|++++|...+..+.+. +. +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 35666666666665543 111223456667777777778888888777777654 21 22345677777
Q ss_pred HHHHhcCChHHHHHHHHhhhcCC--------CCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcC
Q 005136 359 DLYSKCGETKDGRLVFDSIVEKD--------VAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHK 430 (712)
Q Consensus 359 ~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 430 (712)
..|...|++++|...|.+..... +....++..+...+...|++++|
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-------------------------- 146 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEV-------------------------- 146 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHH--------------------------
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHH--------------------------
Confidence 88888888888888877765431 12233444444444444444444
Q ss_pred ChhHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHhccCchHHHHHHHHHHHHc-------CCCC-chhhHHHHHHH
Q 005136 431 QFDLVFAVFNEMLLS------GEIP-NKSTFSSVLCASASVASLEKGKDLHGKIIKL-------GFPY-DVFLGTALTDT 495 (712)
Q Consensus 431 ~~~~a~~~~~~~~~~------g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~ 495 (712)
...|++.... +..| ...++..+...+...|++++|..++.+..+. ...+ ....+..+...
T Consensus 147 -----~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (283)
T 3edt_B 147 -----EYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEER 221 (283)
T ss_dssp -----HHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Confidence 5555555443 1122 2445666777777778888887777776643 1122 22222222222
Q ss_pred HHhcCC------hHHHHHHhccCCCCC---cchHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005136 496 YAKSGD------IESSRRVFDRMPDKN---EISWTVMVRGLAESGYAKESINLFEEMEK 545 (712)
Q Consensus 496 ~~~~g~------~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 545 (712)
+...+. +..+...++.....+ ..++..+...|...|++++|...+++..+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 222 EESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222222 233333333333221 22455566666666666666666666554
No 107
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.91 E-value=3.9e-09 Score=86.46 Aligned_cols=114 Identities=12% Similarity=0.075 Sum_probs=95.6
Q ss_pred CCCCH-HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHH
Q 005136 548 ITPNE-LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAW 623 (712)
Q Consensus 548 ~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 623 (712)
+.|+. ..+......+.+.|++++|++.|++..+. .| +...+..++.+|.+.|++++|+..+++. ...| +...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 45543 45667778888899999999999888733 66 7888999999999999999999999987 4444 47788
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 005136 624 ASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIY 664 (712)
Q Consensus 624 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 664 (712)
..+..++...|++++|+..++++++++|+++.++..|+.++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 88888999999999999999999999999999988888764
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.90 E-value=1.2e-08 Score=97.74 Aligned_cols=135 Identities=12% Similarity=0.005 Sum_probs=115.7
Q ss_pred CCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 005136 550 PNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPDSNAWASLL 627 (712)
Q Consensus 550 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 627 (712)
.+...+..+...+...|++++|...|+++... .| +...+..++.++.+.|++++|...++++ ...|+........
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 34456777888899999999999999999843 67 7888999999999999999999999998 4567765544444
Q ss_pred HH-HhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCcc
Q 005136 628 SG-CKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLRK 687 (712)
Q Consensus 628 ~~-~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~ 687 (712)
.. +...++.+.|...++++++.+|+++.++..|+.+|...|++++|+..++++++..+..
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 33 6788889999999999999999999999999999999999999999999999876543
No 109
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.89 E-value=1.2e-08 Score=92.39 Aligned_cols=159 Identities=14% Similarity=0.062 Sum_probs=110.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHH----------------HHHHhcccCcHHHHHHHHHhcchhcCC
Q 005136 522 VMVRGLAESGYAKESINLFEEMEKTSITPNE-LTILS----------------VLFACSHSGLVDKGLKYFNSMEPIYNI 584 (712)
Q Consensus 522 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~----------------l~~~~~~~g~~~~a~~~~~~~~~~~~~ 584 (712)
.....+...|++++|+..|++.++ ..|+. ..+.. +..++...|++++|+..|++..+.
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--- 83 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--- 83 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---
Confidence 345567788888888888888887 45644 34555 777888888888888888888733
Q ss_pred CC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcC--CHHHHHHHHHHHhccCCCCCchHHH
Q 005136 585 KP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYK--NEQIAERAVKNLWKLAEEHPAGYVL 659 (712)
Q Consensus 585 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~ 659 (712)
.| +...+..++.+|...|++++|+..|++. ...|+ ...+..+...+...| +.+.+...++++....|. ...++.
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~ 162 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYR 162 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHH
Confidence 66 6778888888888888888888888887 44454 666777766665544 344556666665433322 235666
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhCCCc
Q 005136 660 LSNIYASAGRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 660 l~~~~~~~g~~~eA~~~~~~~~~~~~~ 686 (712)
++.++...|++++|+..+++.++..+.
T Consensus 163 ~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 163 DGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 788888888888888888888776543
No 110
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.88 E-value=5e-08 Score=81.09 Aligned_cols=131 Identities=13% Similarity=0.225 Sum_probs=106.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHH
Q 005136 519 SWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDM 597 (712)
Q Consensus 519 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 597 (712)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++... .| +...+..++.+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CCCchHHHHHHHHH
Confidence 46677888888999999999999888753 335567778888888899999999999988743 34 56778888999
Q ss_pred hhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 005136 598 LSRSGRLSEAEDFINSM-PFE-PDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH 653 (712)
Q Consensus 598 ~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 653 (712)
+...|++++|...++++ ... .+...+..+...+...|++++|...++++++..|++
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 99999999999999887 223 357777888888999999999999999999888863
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.86 E-value=1.8e-08 Score=88.46 Aligned_cols=131 Identities=11% Similarity=0.064 Sum_probs=105.9
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHH-H
Q 005136 554 TILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPDSNAWASLLSG-C 630 (712)
Q Consensus 554 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~-~ 630 (712)
.+..+...+...|++++|+..|+++... .| +...+..++.++.+.|++++|+..+++. ...|++......... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDE---LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHH---HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHH
Confidence 3455667788999999999999999843 67 6888999999999999999999999998 345544333222222 2
Q ss_pred hhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCcc
Q 005136 631 KTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLRK 687 (712)
Q Consensus 631 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~ 687 (712)
...++...|+..++++++.+|+++.++..++.++...|++++|+..++++++..+..
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA 141 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence 233444568999999999999999999999999999999999999999999876543
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.86 E-value=2.1e-08 Score=97.20 Aligned_cols=218 Identities=7% Similarity=0.058 Sum_probs=144.9
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHH
Q 005136 429 HKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASAS-VASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRR 507 (712)
Q Consensus 429 ~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 507 (712)
.|++++|.+++++..+... .. +.. .++++.|...+..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4566667777776654311 10 111 45666666666554 344666677777777
Q ss_pred HhccCCC-----CC----cchHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHhcccCcHHHHHH
Q 005136 508 VFDRMPD-----KN----EISWTVMVRGLAESGYAKESINLFEEMEKTSI---TPN--ELTILSVLFACSHSGLVDKGLK 573 (712)
Q Consensus 508 ~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~p~--~~~~~~l~~~~~~~g~~~~a~~ 573 (712)
.|.+... .+ ..+|+.+...|...|++++|+..+++..+.-. .|. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 6665542 11 23577788888889999999999988765311 121 2467778888888 99999999
Q ss_pred HHHhcchhcC---CCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CC---CCC----HHHHHHHHHHHhhcCCHHHHHH
Q 005136 574 YFNSMEPIYN---IKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PF---EPD----SNAWASLLSGCKTYKNEQIAER 641 (712)
Q Consensus 574 ~~~~~~~~~~---~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~a~~ 641 (712)
.|++...... -.+ ...++..++.+|.+.|++++|+..+++. .. .+. ...+..+..++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9998763211 111 1467888999999999999999999886 11 222 2245556666778899999999
Q ss_pred HHHHHhccCCCCCch-----HHHHHHHHHhcCCchhHHH
Q 005136 642 AVKNLWKLAEEHPAG-----YVLLSNIYASAGRWIDAMN 675 (712)
Q Consensus 642 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~eA~~ 675 (712)
.+++++ ..|+.... +..++..+ ..|+.+++.+
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 99876533 44555555 5677666555
No 113
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.85 E-value=1.7e-08 Score=84.92 Aligned_cols=108 Identities=7% Similarity=-0.034 Sum_probs=88.7
Q ss_pred HHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC
Q 005136 574 YFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLA 650 (712)
Q Consensus 574 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 650 (712)
.|+++. ...| +...+..++..+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++
T Consensus 6 ~l~~al---~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 6 TLAMLR---GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp ---CCT---TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHH---cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 444444 4466 5667778888899999999999999887 3344 57778888888999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 651 EEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 651 p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
|+++.++..++.+|...|++++|++.+++.++..
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999988754
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.84 E-value=8.3e-09 Score=100.02 Aligned_cols=197 Identities=7% Similarity=0.038 Sum_probs=149.7
Q ss_pred ccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHH
Q 005136 463 SVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEE 542 (712)
Q Consensus 463 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 542 (712)
..|++++|.+++++..+.... . . +...+++++|...|.. ....|...|++++|...+.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~--~-------~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S--F-------MKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C--S-------SSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c--c-------cCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 357788999999888764211 1 0 1115788888887665 46778899999999999998
Q ss_pred HHHcCC---CC-C-HHHHHHHHHHhcccCcHHHHHHHHHhcchhcCC--CC--chHHHHHHHHHhhhcCChHHHHHHHHh
Q 005136 543 MEKTSI---TP-N-ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNI--KP--NGRHYTCVVDMLSRSGRLSEAEDFINS 613 (712)
Q Consensus 543 ~~~~~~---~p-~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 613 (712)
..+... .+ . ..+|..+...|...|++++|+..|++..+...- .| ...++..++.+|.. |++++|+..+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 876311 11 1 246888888999999999999999887633211 12 24578889999988 999999999988
Q ss_pred C-CC---CCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCC------chHHHHHHHHHhcCCchhHHHHHHH
Q 005136 614 M-PF---EPD----SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHP------AGYVLLSNIYASAGRWIDAMNVRKL 679 (712)
Q Consensus 614 ~-~~---~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~eA~~~~~~ 679 (712)
. .. ..+ ...+..+...+...|++++|+..+++++++.|++. ..+..++.++...|++++|+..+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 11 111 45677888889999999999999999999876654 3677888889999999999999999
Q ss_pred HH
Q 005136 680 MT 681 (712)
Q Consensus 680 ~~ 681 (712)
.+
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 88
No 115
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.83 E-value=6.2e-08 Score=104.86 Aligned_cols=166 Identities=8% Similarity=-0.053 Sum_probs=86.7
Q ss_pred HhcCChhHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh
Q 005136 427 LEHKQFDLVFAVFNEML--------LSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAK 498 (712)
Q Consensus 427 ~~~~~~~~a~~~~~~~~--------~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 498 (712)
...|++++|++.+++.. +. .+.+...+..+..++...|++++|...++++.+.. +.+...+..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 55666666666666665 22 12233445555555555666666666665555542 3344455555555555
Q ss_pred cCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHH
Q 005136 499 SGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKY 574 (712)
Q Consensus 499 ~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 574 (712)
.|++++|...|++.. ..+...|..+..++...|++++ ++.|+++.+ +.| +...+..+..++...|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555543 1234445555555555555555 555555555 233 234455555555555555555555
Q ss_pred HHhcchhcCCCC-chHHHHHHHHHhhh
Q 005136 575 FNSMEPIYNIKP-NGRHYTCVVDMLSR 600 (712)
Q Consensus 575 ~~~~~~~~~~~p-~~~~~~~l~~~~~~ 600 (712)
|+++. .+.| +...+..++.++..
T Consensus 557 ~~~al---~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 557 LDEVP---PTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHTSC---TTSTTHHHHHHHHHHHTC-
T ss_pred HHhhc---ccCcccHHHHHHHHHHHHc
Confidence 55554 2344 34445555555544
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.82 E-value=2.7e-07 Score=88.73 Aligned_cols=160 Identities=9% Similarity=-0.084 Sum_probs=122.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC-CCCHH----HHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCc----hHHHHH
Q 005136 523 MVRGLAESGYAKESINLFEEMEKTSI-TPNEL----TILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPN----GRHYTC 593 (712)
Q Consensus 523 l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~ 593 (712)
.+..+...|++++|.+++++..+... .|+.. .+..+...+...|++++|+..|+++.....-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46678889999999999999887421 22211 2334666777888999999999988742121223 336889
Q ss_pred HHHHhhhcCChHHHHHHHHhCC-----CCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC------CchHH
Q 005136 594 VVDMLSRSGRLSEAEDFINSMP-----FEPD----SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH------PAGYV 658 (712)
Q Consensus 594 l~~~~~~~g~~~~A~~~~~~~~-----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 658 (712)
++.+|...|++++|...++++- ...+ ..++..+...|...|++++|...+++++++.+.. +.++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999988762 1112 3467788888999999999999999999875443 56899
Q ss_pred HHHHHHHhcCC-chhHHHHHHHHHh
Q 005136 659 LLSNIYASAGR-WIDAMNVRKLMTE 682 (712)
Q Consensus 659 ~l~~~~~~~g~-~~eA~~~~~~~~~ 682 (712)
.+|.+|.+.|+ +++|++.+++.++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 5999999998875
No 117
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.80 E-value=6.8e-08 Score=92.92 Aligned_cols=163 Identities=9% Similarity=-0.112 Sum_probs=121.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHhcccCcHHHHHHHHHhcchhcCC--CCc--hHH
Q 005136 520 WTVMVRGLAESGYAKESINLFEEMEKTSITPNE-----LTILSVLFACSHSGLVDKGLKYFNSMEPIYNI--KPN--GRH 590 (712)
Q Consensus 520 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~p~--~~~ 590 (712)
+...+..+...|++++|++.+.+..+....... ..+..+...+...|++++|+..+++......- .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 344566788899999999999888774222111 12334555677888999999999887632111 121 457
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhCC----CCCC-----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC------CCc
Q 005136 591 YTCVVDMLSRSGRLSEAEDFINSMP----FEPD-----SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEE------HPA 655 (712)
Q Consensus 591 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~ 655 (712)
++.++.+|...|++++|...+++.. ..|+ ..++..+...|...|++++|...++++++..++ -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 8899999999999999999998761 2222 257788888899999999999999999876432 156
Q ss_pred hHHHHHHHHHhcCCchhH-HHHHHHHHh
Q 005136 656 GYVLLSNIYASAGRWIDA-MNVRKLMTE 682 (712)
Q Consensus 656 ~~~~l~~~~~~~g~~~eA-~~~~~~~~~ 682 (712)
++..+|.+|.+.|++++| ..++++.++
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 889999999999999999 777887654
No 118
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.78 E-value=9.7e-07 Score=83.74 Aligned_cols=148 Identities=14% Similarity=0.181 Sum_probs=94.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHH--HHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCC----
Q 005136 531 GYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVD--KGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGR---- 603 (712)
Q Consensus 531 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~---- 603 (712)
+++++++++++++.+.. +-+...|+.-...+.+.|.++ +++++++++.+. .| |...|+.-..++.+.|+
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchh
Confidence 56677777777776631 224455665555555566665 677777776633 45 56666666666655555
Q ss_pred --hHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCC-HHHHHHHHHHHhccC---CCCCchHHHHHHHHHhcCCchhHHH
Q 005136 604 --LSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKN-EQIAERAVKNLWKLA---EEHPAGYVLLSNIYASAGRWIDAMN 675 (712)
Q Consensus 604 --~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~eA~~ 675 (712)
++++++.++++ ...| +...|......+...|+ .+.+..++++++++. |.++.++..|+.+|.+.|+.++|++
T Consensus 200 ~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 66777776665 3333 45556666666655555 344556777776665 6777788888888888888888888
Q ss_pred HHHHHHh
Q 005136 676 VRKLMTE 682 (712)
Q Consensus 676 ~~~~~~~ 682 (712)
+++++.+
T Consensus 280 ~~~~l~~ 286 (306)
T 3dra_A 280 VYDLLKS 286 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8887765
No 119
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.78 E-value=8.8e-08 Score=87.96 Aligned_cols=64 Identities=14% Similarity=0.150 Sum_probs=53.1
Q ss_pred HHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCc
Q 005136 592 TCVVDMLSRSGRLSEAEDFINSM-PFEPD----SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPA 655 (712)
Q Consensus 592 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 655 (712)
..++..|.+.|++++|+..++++ ...|+ ...+..+..++...|+.++|...++++....|++.+
T Consensus 151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 151 YSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 35678889999999999999987 33444 356778888899999999999999999998888654
No 120
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.78 E-value=6.4e-08 Score=103.00 Aligned_cols=151 Identities=13% Similarity=0.008 Sum_probs=94.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHH
Q 005136 530 SGYAKESINLFEEMEKTSITPN-ELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEA 607 (712)
Q Consensus 530 ~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 607 (712)
.|++++|++.+++..+ ..|+ ...+..+...+...|++++|.+.|++.. ...| +...+..++.+|...|++++|
T Consensus 2 ~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGL---ALHPGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---TTSTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3567777777777766 3443 4566677777777777777777777776 3355 566777777777777777777
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc---CCchhHHHHHHHHHh
Q 005136 608 EDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASA---GRWIDAMNVRKLMTE 682 (712)
Q Consensus 608 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~eA~~~~~~~~~ 682 (712)
.+.+++. ...| +...+..+...+...|++++|.+.++++++.+|+++.++..++.++... |++++|.+.+++.++
T Consensus 77 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 77 AVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 7777766 3333 3566667777777777777777777777777777777777777777777 777777777777766
Q ss_pred CCC
Q 005136 683 KGL 685 (712)
Q Consensus 683 ~~~ 685 (712)
.+.
T Consensus 157 ~~p 159 (568)
T 2vsy_A 157 QGV 159 (568)
T ss_dssp HTC
T ss_pred cCC
Confidence 543
No 121
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.75 E-value=2e-08 Score=88.30 Aligned_cols=124 Identities=10% Similarity=0.080 Sum_probs=59.6
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHH-hhhcCCh-
Q 005136 528 AESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDM-LSRSGRL- 604 (712)
Q Consensus 528 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~- 604 (712)
...|++++|+..+++..+.. +.+...+..+...|...|++++|+..|+++... .| +...+..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcc
Confidence 34455555666665555531 223344555555555555555555555555422 23 34445555555 4455555
Q ss_pred -HHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCc
Q 005136 605 -SEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPA 655 (712)
Q Consensus 605 -~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 655 (712)
++|...+++. ...|+ ...+..+...+...|++++|...++++++..|+++.
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 5555555544 22222 344444444455555555555555555555555443
No 122
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.74 E-value=5.4e-06 Score=85.36 Aligned_cols=125 Identities=15% Similarity=0.140 Sum_probs=84.0
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCchHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 005136 417 VSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASA-SVASLEKGKDLHGKIIKLGFPYDVFLGTALTDT 495 (712)
Q Consensus 417 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 495 (712)
..|...+....+.++.+.|..+|.+. ... ..+...|......-. ..++.+.|..+++...+.. +.++..+...++.
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 35666667777778888889999888 321 223334432221111 2336888999998888753 3334455556777
Q ss_pred HHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005136 496 YAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEK 545 (712)
Q Consensus 496 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 545 (712)
....|+.+.|..+|+.+. .....|...+..-...|+.+.+.+++++..+
T Consensus 364 e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 778888899999998884 3456677777777778888888888887764
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.74 E-value=9.7e-08 Score=82.80 Aligned_cols=126 Identities=8% Similarity=0.011 Sum_probs=100.6
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005136 554 TILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGC 630 (712)
Q Consensus 554 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 630 (712)
.+..+...+...|++++|...|++.... .| +...+..++.++...|++++|...+++. ...| +...+..+...+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3555666677778888888888877632 44 6777888888888889999998888876 3334 467788888889
Q ss_pred hhcCCHHHHHHHHHHHhccCCCCCchHHHHHHH--HHhcCCchhHHHHHHHHHh
Q 005136 631 KTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNI--YASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 631 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~eA~~~~~~~~~ 682 (712)
...|++++|...++++++..|+++.++..++.+ +.+.|++++|++.+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999998888555554 8889999999999987754
No 124
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.73 E-value=5.2e-08 Score=77.83 Aligned_cols=101 Identities=11% Similarity=0.108 Sum_probs=87.5
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC--CCchHHHHHH
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFE-PDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEE--HPAGYVLLSN 662 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 662 (712)
+...+..++..+...|++++|...+++. ... .+...+..+...+...|++++|...++++++..|+ ++.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 5666778888889999999999999887 333 35677888888899999999999999999999999 9999999999
Q ss_pred HHHhc-CCchhHHHHHHHHHhCCCcc
Q 005136 663 IYASA-GRWIDAMNVRKLMTEKGLRK 687 (712)
Q Consensus 663 ~~~~~-g~~~eA~~~~~~~~~~~~~~ 687 (712)
++.+. |++++|++.+++..+..+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 99999 99999999999998876543
No 125
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.71 E-value=1e-07 Score=79.00 Aligned_cols=114 Identities=11% Similarity=0.068 Sum_probs=69.3
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 005136 553 LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSG 629 (712)
Q Consensus 553 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 629 (712)
..+..+...+...|++++|+..|+++. ...| +...+..++.++...|++++|...+++. ...| +...+..+...
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAI---KRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHH---TTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 345555555555666666666665554 2233 4555666666666666666666666655 2222 35556666666
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 005136 630 CKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGR 669 (712)
Q Consensus 630 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 669 (712)
+...|++++|...++++++..|+++.++..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 6677777777777777777777777777777777666553
No 126
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.70 E-value=9.1e-08 Score=78.48 Aligned_cols=98 Identities=8% Similarity=0.027 Sum_probs=76.9
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIY 664 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 664 (712)
+...+..++..+.+.|++++|+..|++. ...| +...+..+..++...|++++|+..++++++++|+++.++..++.++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3456667777888888888888888776 3334 4677777777788888888888888888888888888888888888
Q ss_pred HhcCCchhHHHHHHHHHhCC
Q 005136 665 ASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 665 ~~~g~~~eA~~~~~~~~~~~ 684 (712)
...|++++|+..+++.++..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhC
Confidence 88888888888888877654
No 127
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.69 E-value=1.6e-07 Score=86.73 Aligned_cols=125 Identities=13% Similarity=-0.020 Sum_probs=71.2
Q ss_pred HHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCH----HHHHHHHHHHhhc
Q 005136 558 VLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSMPFEPDS----NAWASLLSGCKTY 633 (712)
Q Consensus 558 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~~~~~l~~~~~~~ 633 (712)
+...+...|++++|.+.|+.+.. ..|+......++..+.+.++|++|+..|+.....|++ ..+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence 34445556666666666666652 2342224555555666666666666666655333322 2344445556666
Q ss_pred CCHHHHHHHHHHHhccC--CC-CCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 634 KNEQIAERAVKNLWKLA--EE-HPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 634 g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
|++++|+..++++.... |. .+.+...++.++.+.|+.++|...|+++.+..+
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 66666666666665332 33 334566666666666666666666666666543
No 128
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.68 E-value=4.7e-08 Score=79.28 Aligned_cols=97 Identities=15% Similarity=0.023 Sum_probs=84.6
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 005136 589 RHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYAS 666 (712)
Q Consensus 589 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 666 (712)
..+..++..+.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|+++.++..|+.++.+
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34567788899999999999999987 4455 577788888889999999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHhCCC
Q 005136 667 AGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 667 ~g~~~eA~~~~~~~~~~~~ 685 (712)
.|++++|+..+++.++..+
T Consensus 98 ~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred cCCHHHHHHHHHHHHHhCc
Confidence 9999999999999987553
No 129
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.67 E-value=6.5e-06 Score=84.77 Aligned_cols=368 Identities=10% Similarity=0.053 Sum_probs=201.3
Q ss_pred hHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCC--CCceeHHHHHHHHHhcCC-hhHHHHHHHHHHhC-
Q 005136 235 VDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPE--RNEVSWSVMIARYNQSGY-PEEAFRLFRQMTRY- 310 (712)
Q Consensus 235 ~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~- 310 (712)
++.|..+|+++.. .+-. |+++.+..+|++... |++..|...+....+.+. .+.+..+|+.....
T Consensus 11 i~~aR~vyer~l~-----------~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~v 78 (493)
T 2uy1_A 11 LSSPSAIMEHARR-----------LYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQF 78 (493)
T ss_dssp -CCHHHHHHHHHH-----------HHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHH-----------HCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHc
Confidence 6666666664432 2211 777888888877654 666677776666655553 35566666665542
Q ss_pred CCC-CCHHHHHHHHHHHhc----cCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCce
Q 005136 311 SFK-PNTSCFSIVLSALAS----LKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHV 385 (712)
Q Consensus 311 ~~~-p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 385 (712)
|.. ++...+...+..+.. .++.+.+..+++..+......-..+|......-.. .+...+..++.+..
T Consensus 79 g~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~-~~~~~~~~~~~~~~------- 150 (493)
T 2uy1_A 79 ENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELE-LNKITGKKIVGDTL------- 150 (493)
T ss_dssp TTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH-HCHHHHHHHHHHHH-------
T ss_pred CCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHH-hccccHHHHHHHHh-------
Confidence 432 355556666655432 34566677777777653221112233333222111 11222222222211
Q ss_pred eeHHHHHHHHhccCChhhHHHHhhcCC----CCCcccHHHHHHHHHhcC-------ChhHHHHHHHHHHHCCCCCCHHHH
Q 005136 386 VSWNSMIGGYGLNGQMEEAKELFDNMP----KRNDVSWSAIISGYLEHK-------QFDLVFAVFNEMLLSGEIPNKSTF 454 (712)
Q Consensus 386 ~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~g~~p~~~~~ 454 (712)
+.+..|..+++.+. ..+...|...+..-...+ ..+.+..+|++++... +.+...+
T Consensus 151 -------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW 216 (493)
T 2uy1_A 151 -------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVY 216 (493)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHH
T ss_pred -------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHH
Confidence 01111111111111 012224444333322211 0234667888877653 4456666
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHH-HHHhccCC------------CCCcchHH
Q 005136 455 SSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESS-RRVFDRMP------------DKNEISWT 521 (712)
Q Consensus 455 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~------------~~~~~~~~ 521 (712)
...+.-+...|+.+.|..++++.... +.+...+.. |....+.++. ..+.+... ......|.
T Consensus 217 ~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~ 290 (493)
T 2uy1_A 217 FFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRI 290 (493)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHH
Confidence 66677777888899999999988887 444333322 2221111111 11111110 00123566
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhc-ccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhh
Q 005136 522 VMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACS-HSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSR 600 (712)
Q Consensus 522 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 600 (712)
..+....+.++.+.|..+|+++ .. ...+...|......-. ..++.+.|..+|+...+.++- ++..+...++...+
T Consensus 291 ~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~~~~~~yid~e~~ 366 (493)
T 2uy1_A 291 NHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--STLLKEEFFLFLLR 366 (493)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHH
Confidence 6777777788899999999998 32 1223344432222112 234699999999998855322 34556667787788
Q ss_pred cCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 005136 601 SGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWK 648 (712)
Q Consensus 601 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 648 (712)
.|+.+.|..+|+++. .....|...+..-...|+.+.+..++++..+
T Consensus 367 ~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 367 IGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999984 2466777777777788999999998888875
No 130
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.66 E-value=4.5e-07 Score=82.39 Aligned_cols=130 Identities=9% Similarity=-0.028 Sum_probs=89.4
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcH
Q 005136 489 GTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLV 568 (712)
Q Consensus 489 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 568 (712)
+..+...+...|++++|...|++..+++...|..+...+...|++++|++.+++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 44556667777778888877777776677777777777777788888888777777642 23445677777777777888
Q ss_pred HHHHHHHHhcchhcC-------------CCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC
Q 005136 569 DKGLKYFNSMEPIYN-------------IKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD 619 (712)
Q Consensus 569 ~~a~~~~~~~~~~~~-------------~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 619 (712)
++|+..|+++.+... ..| ....+..++.+|...|++++|...+++. ...|+
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 888777777763211 122 2366777777777778888887777776 44554
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.66 E-value=2.1e-07 Score=76.64 Aligned_cols=116 Identities=10% Similarity=0.021 Sum_probs=88.6
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 005136 553 LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSG 629 (712)
Q Consensus 553 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 629 (712)
..+..+...+...|+++.|...|+++... .| +...+..++.++...|++++|...+++. ...| +...+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 44556666677777777777777776632 34 5667777888888888888888888776 3333 46677777778
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCch
Q 005136 630 CKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWI 671 (712)
Q Consensus 630 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 671 (712)
+...|++++|...++++++..|+++.++..++.++...|+++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 888999999999999999999998889999999988888763
No 132
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.65 E-value=7.9e-08 Score=94.18 Aligned_cols=160 Identities=9% Similarity=0.037 Sum_probs=113.3
Q ss_pred CChHHHHHHhccCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHH
Q 005136 500 GDIESSRRVFDRMPD---KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFN 576 (712)
Q Consensus 500 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 576 (712)
+++++|...++.... .+...+..+...+...|++++|+..|++.++. .|+...+ ..+.+.+
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~--- 190 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEAQK--- 190 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHHHH---
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC-----------ChHHHHH---
Confidence 334444444444332 13345666667777777777777777777663 3332110 0011110
Q ss_pred hcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC
Q 005136 577 SMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH 653 (712)
Q Consensus 577 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~ 653 (712)
..| ....+..++.+|.+.|++++|+..+++. ...| +...+..+..++...|++++|+..++++++++|++
T Consensus 191 -------~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 263 (336)
T 1p5q_A 191 -------AQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263 (336)
T ss_dssp -------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred -------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 011 2577888999999999999999999887 3344 57788888888999999999999999999999999
Q ss_pred CchHHHHHHHHHhcCCchhH-HHHHHHHHh
Q 005136 654 PAGYVLLSNIYASAGRWIDA-MNVRKLMTE 682 (712)
Q Consensus 654 ~~~~~~l~~~~~~~g~~~eA-~~~~~~~~~ 682 (712)
+.++..++.++...|++++| ...+++|.+
T Consensus 264 ~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 264 KAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 556777654
No 133
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.65 E-value=7.5e-08 Score=78.91 Aligned_cols=97 Identities=7% Similarity=-0.046 Sum_probs=74.9
Q ss_pred hHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCc-------hHH
Q 005136 588 GRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPA-------GYV 658 (712)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~ 658 (712)
...+..++..+.+.|++++|+..|++. ...|+ ...+..+..+|...|++++|+..+++++++.|+++. +|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345667788888888888888888876 34444 666777777888888888888888888888777653 677
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 659 LLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 659 ~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
.+|.++...|++++|++.+++.++..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 77888888888888888888877643
No 134
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.63 E-value=3.3e-07 Score=74.75 Aligned_cols=113 Identities=15% Similarity=0.207 Sum_probs=78.9
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 005136 553 LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PF-EPDSNAWASLLSG 629 (712)
Q Consensus 553 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~ 629 (712)
..+..+...+...|++++|.+.++++... .| +...+..++.++.+.|++++|..+++++ .. ..+...+..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 44555666666667777777777666532 33 4566667777777777777777777766 22 2346666777777
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcC
Q 005136 630 CKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAG 668 (712)
Q Consensus 630 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 668 (712)
+...|++++|...++++++..|+++.++..++.++.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 778888888888888888888888888888887776654
No 135
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.62 E-value=4.8e-07 Score=81.97 Aligned_cols=111 Identities=9% Similarity=-0.036 Sum_probs=60.2
Q ss_pred ChHHHHHHHhhCCC-CChhHHHHHHHHHHc----cCChHHHHHHhhhCCCC-C----cccHHHHHHHHHh----cCChhH
Q 005136 102 NLEEAQRLFDGMPE-RNEVSWTALISGFMK----HGRVEESMWYFERNPFQ-N----VISWTAAICGFVQ----NGFSFE 167 (712)
Q Consensus 102 ~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~-~----~~~~~~li~~~~~----~g~~~~ 167 (712)
++++|...|++..+ .++..+..|...|.. .+++++|..+|++.... + ..++..|...|.. .+++++
T Consensus 68 ~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 147 (212)
T 3rjv_A 68 DYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVK 147 (212)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence 44555555544433 234445555555554 55666666666553322 1 3556666666665 566677
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHhcc------cchHHHHHHHHHHHHhC
Q 005136 168 ALKLFLKLLESGVKPNEVTFSSICKACAEI------NDFRLGLSVFGLIFKAG 214 (712)
Q Consensus 168 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~ 214 (712)
|+..|++..+. ..+...+..|...+... .+.++|...++...+.|
T Consensus 148 A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 148 ASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77777766654 12333455555555432 26677777777666665
No 136
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.62 E-value=3e-08 Score=94.48 Aligned_cols=189 Identities=7% Similarity=-0.054 Sum_probs=115.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHhccCC---CCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHh
Q 005136 487 FLGTALTDTYAKSGDIESSRRVFDRMP---DKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFAC 562 (712)
Q Consensus 487 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 562 (712)
..+..+...+...|++++|...|+... ..+...|..+...+...|++++|+..+++..+ +.| +...+..+..++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 344455556666666666666666554 23455667777777777777777777777776 344 345666777777
Q ss_pred cccCcHHHHHHHHHhcchhcCCCCc-hHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 005136 563 SHSGLVDKGLKYFNSMEPIYNIKPN-GRHYTCVVDMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAER 641 (712)
Q Consensus 563 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 641 (712)
...|++++|+..|++..+. .|+ ...+...+....+..+...... .......++......+ ..+ ..|+.++|.+
T Consensus 83 ~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~ 156 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAERERELE 156 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHHH
Confidence 7788888888877776532 231 1111111111111111111111 1222223333333322 222 3789999999
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHhc-CCchhHHHHHHHHHhC
Q 005136 642 AVKNLWKLAEEHPAGYVLLSNIYASA-GRWIDAMNVRKLMTEK 683 (712)
Q Consensus 642 ~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~eA~~~~~~~~~~ 683 (712)
.++++++.+|++......+...+.+. +++++|.++|+++.+.
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 157 ECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999888888888877776 7789999999887663
No 137
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.61 E-value=9.4e-08 Score=80.57 Aligned_cols=104 Identities=10% Similarity=0.051 Sum_probs=87.0
Q ss_pred CCCCH-HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHH
Q 005136 548 ITPNE-LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAW 623 (712)
Q Consensus 548 ~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~ 623 (712)
+.|+. ..+..+...+...|++++|+..|+++.. +.| +...|..++.+|...|++++|+..|++. ...|+ +..+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 45543 4577778888899999999999999884 367 7888999999999999999999999987 44454 6778
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCCCC
Q 005136 624 ASLLSGCKTYKNEQIAERAVKNLWKLAEEHP 654 (712)
Q Consensus 624 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 654 (712)
..+..++...|++++|+..+++++++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 8888889999999999999999999999854
No 138
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.61 E-value=1.7e-07 Score=81.12 Aligned_cols=110 Identities=15% Similarity=0.058 Sum_probs=92.5
Q ss_pred CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHH
Q 005136 551 NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLL 627 (712)
Q Consensus 551 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~ 627 (712)
+...+..+...+...|++++|+..|++..+. .| +...+..++.+|.+.|++++|+..+++. ...|+ ...+..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3456778888899999999999999998843 56 7888999999999999999999999987 44454 77888888
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 005136 628 SGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNI 663 (712)
Q Consensus 628 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 663 (712)
.++...|++++|...++++++++|+++..+...+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 889999999999999999999999998877666543
No 139
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.59 E-value=1.9e-05 Score=74.94 Aligned_cols=225 Identities=11% Similarity=0.024 Sum_probs=162.6
Q ss_pred hhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccC--chHHHHHHHHHHHHcCCCCchhhHHHHHHHH----Hhc---CC
Q 005136 432 FDLVFAVFNEMLLSGEIPNKS-TFSSVLCASASVA--SLEKGKDLHGKIIKLGFPYDVFLGTALTDTY----AKS---GD 501 (712)
Q Consensus 432 ~~~a~~~~~~~~~~g~~p~~~-~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~ 501 (712)
.++|+..+..++..+ |+.. .++.--..+...+ +++++..++..+...+ +-+..+++.-..++ ... ++
T Consensus 49 s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 49 SERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp SHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence 357788888877753 4433 3344444455556 7888888888887754 33444444333333 344 78
Q ss_pred hHHHHHHhccCC---CCCcchHHHHHHHHHHcCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCc------HHH
Q 005136 502 IESSRRVFDRMP---DKNEISWTVMVRGLAESGYAK--ESINLFEEMEKTSITPNELTILSVLFACSHSGL------VDK 570 (712)
Q Consensus 502 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~ 570 (712)
++++..+++.+. .++..+|+.-...+...|+++ ++++.++++++.. .-|...|+.-.....+.+. +++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 889999888876 356667877777788888888 9999999999853 2355677766666666665 899
Q ss_pred HHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHH-HHHHHHhC-CC----CCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 005136 571 GLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSE-AEDFINSM-PF----EPDSNAWASLLSGCKTYKNEQIAERAV 643 (712)
Q Consensus 571 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~g~~~~a~~~~ 643 (712)
+++.++++.. ..| |...|+.+...+.+.|+..+ +..++++. .. ..++..+..++..+.+.|+.++|.+++
T Consensus 205 El~~~~~aI~---~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 205 ELNYVKDKIV---KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 9999998883 377 88899999999988888544 55677776 22 345778888888898999999999999
Q ss_pred HHHhc-cCCCCCchHHHHHHH
Q 005136 644 KNLWK-LAEEHPAGYVLLSNI 663 (712)
Q Consensus 644 ~~~~~-~~p~~~~~~~~l~~~ 663 (712)
+++.+ .+|-....+...+..
T Consensus 282 ~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 282 DLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHhccChHHHHHHHHHHhh
Confidence 99996 799887777766543
No 140
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.58 E-value=3e-07 Score=84.94 Aligned_cols=140 Identities=12% Similarity=-0.028 Sum_probs=107.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCc--hHHHHHHHHH
Q 005136 520 WTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPN--GRHYTCVVDM 597 (712)
Q Consensus 520 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~ 597 (712)
+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... . .|. ...+..++.+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHH
Confidence 344667788999999999999888763 465555556666788999999999999876521 1 221 3477889999
Q ss_pred hhhcCChHHHHHHHHhCCCC---CC--HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 005136 598 LSRSGRLSEAEDFINSMPFE---PD--SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIY 664 (712)
Q Consensus 598 ~~~~g~~~~A~~~~~~~~~~---p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 664 (712)
+.+.|++++|+..|++.... |. ...+.....++.+.|+.++|...+++++..+|+ +.+...|...-
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~~ 251 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDPS 251 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCTT
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCCC
Confidence 99999999999999987222 43 345667777789999999999999999999998 77666665433
No 141
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.58 E-value=3.9e-07 Score=75.94 Aligned_cols=98 Identities=8% Similarity=0.000 Sum_probs=75.4
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIY 664 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 664 (712)
+...+..++..+...|++++|...+++. ...| +...+..+..++...|++++|...++++++.+|+++.++..++.++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 5667777777788888888888877775 3333 3666777777778888888888888888888888888888888888
Q ss_pred HhcCCchhHHHHHHHHHhCC
Q 005136 665 ASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 665 ~~~g~~~eA~~~~~~~~~~~ 684 (712)
...|++++|+..+++.++..
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHC
Confidence 88888888888888877644
No 142
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.57 E-value=4.1e-07 Score=73.27 Aligned_cols=97 Identities=10% Similarity=0.036 Sum_probs=57.1
Q ss_pred hHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 005136 588 GRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYA 665 (712)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 665 (712)
...+..++..+...|++++|...+++. ...| +...+..+...+...|++++|...++++++..|+++.++..++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 344555555566666666666666554 2222 34555555555666666666666666666666666666666666666
Q ss_pred hcCCchhHHHHHHHHHhCC
Q 005136 666 SAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 666 ~~g~~~eA~~~~~~~~~~~ 684 (712)
..|++++|.+.+++..+.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTC
T ss_pred HHhhHHHHHHHHHHHHHcC
Confidence 6666666666666665543
No 143
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.57 E-value=4.3e-07 Score=75.07 Aligned_cols=99 Identities=12% Similarity=0.091 Sum_probs=90.5
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIY 664 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 664 (712)
+...+..++..+.+.|++++|...+++. ...| +...+..+...+...|++++|...++++++..|+++.++..++.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 6778899999999999999999999987 4455 5778888888899999999999999999999999999999999999
Q ss_pred HhcCCchhHHHHHHHHHhCCC
Q 005136 665 ASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 665 ~~~g~~~eA~~~~~~~~~~~~ 685 (712)
.+.|++++|++.+++.++..+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHhhHHHHHHHHHHHHHhCC
Confidence 999999999999999988654
No 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.56 E-value=1.1e-07 Score=80.33 Aligned_cols=114 Identities=11% Similarity=0.054 Sum_probs=89.2
Q ss_pred HHHHHHcCCCCCH-HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CC
Q 005136 540 FEEMEKTSITPNE-LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PF 616 (712)
Q Consensus 540 ~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 616 (712)
++++.. +.|+. ..+..+...+...|++++|+..|+++... .| +...+..++.+|...|++++|+..+++. ..
T Consensus 10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 444443 44543 45666777888889999999998888733 56 7788888999999999999999999887 33
Q ss_pred CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHH
Q 005136 617 EP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYV 658 (712)
Q Consensus 617 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 658 (712)
.| +...+..+..++...|++++|+..+++++++.|++|....
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 44 4677788888899999999999999999999999876543
No 145
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=6.2e-07 Score=75.82 Aligned_cols=98 Identities=9% Similarity=-0.050 Sum_probs=61.6
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD----SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLS 661 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 661 (712)
+...+..++..+...|++++|...+++. ...|+ ...+..+...+...|++++|...++++++..|+++.++..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4555556666666666666666666655 44454 344555555566666666666666666666666666666666
Q ss_pred HHHHhcCCchhHHHHHHHHHhCC
Q 005136 662 NIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 662 ~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
.++...|++++|+.++++.++..
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC
Confidence 66666666666666666666543
No 146
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.52 E-value=1.1e-06 Score=79.00 Aligned_cols=153 Identities=9% Similarity=0.011 Sum_probs=90.0
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchh---cCCCC-chHHHHHHHHHhhhcCCh
Q 005136 529 ESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPI---YNIKP-NGRHYTCVVDMLSRSGRL 604 (712)
Q Consensus 529 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~~~~~l~~~~~~~g~~ 604 (712)
..|++++|.+.++.+... .......+..+...+...|++++|...+++.... .+..| ....+..++.++...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 455666666643333221 1112345555556666666666666666655421 11222 345666777777777777
Q ss_pred HHHHHHHHhC-C---CCC-C----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC--C----CchHHHHHHHHHhcCC
Q 005136 605 SEAEDFINSM-P---FEP-D----SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEE--H----PAGYVLLSNIYASAGR 669 (712)
Q Consensus 605 ~~A~~~~~~~-~---~~p-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~--~----~~~~~~l~~~~~~~g~ 669 (712)
++|...+++. . ..+ + ...+..+...+...|++++|...++++++..+. + ..++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777777664 1 122 2 233555666677788888888888887764322 2 1245778888888888
Q ss_pred chhHHHHHHHHHh
Q 005136 670 WIDAMNVRKLMTE 682 (712)
Q Consensus 670 ~~eA~~~~~~~~~ 682 (712)
+++|.+.+++.++
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887765
No 147
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.51 E-value=6.4e-07 Score=72.99 Aligned_cols=98 Identities=14% Similarity=0.210 Sum_probs=88.4
Q ss_pred hHHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 005136 588 GRHYTCVVDMLSRSGRLSEAEDFINSM-PFE-PDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYA 665 (712)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 665 (712)
...+..++..+...|++++|.+.++++ ... .+...+..+...+...|++++|...++++++..|+++.++..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888999999999999999999987 333 457778888888999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHhCCC
Q 005136 666 SAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 666 ~~g~~~eA~~~~~~~~~~~~ 685 (712)
..|++++|..+++++.+..+
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HhcCHHHHHHHHHHHHHhCC
Confidence 99999999999999988654
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.51 E-value=3.7e-07 Score=81.81 Aligned_cols=167 Identities=8% Similarity=-0.060 Sum_probs=103.5
Q ss_pred HhcCChHHHHHHhccCCCC---CcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHH
Q 005136 497 AKSGDIESSRRVFDRMPDK---NEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLK 573 (712)
Q Consensus 497 ~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 573 (712)
...|+++.+.+.++...+. ....+..+...+...|++++|+..|++..+ +.|+...+... ....-.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~--------~~~~~~- 83 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQ--------ILLDKK- 83 (198)
T ss_dssp -------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCH--------HHHHHH-
T ss_pred hhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchh--------hHHHHH-
Confidence 3445566665555543321 233455666677777777777777777776 33332111000 000000
Q ss_pred HHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC
Q 005136 574 YFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAE 651 (712)
Q Consensus 574 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 651 (712)
. ......+..++.+|.+.|++++|+..+++. ...| +...+..+..++...|++++|...+++++++.|
T Consensus 84 --~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 84 --K--------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153 (198)
T ss_dssp --H--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred --H--------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 0 002367778888999999999999998887 3334 577788888889999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCCchhHH-HHHHHHHhCC
Q 005136 652 EHPAGYVLLSNIYASAGRWIDAM-NVRKLMTEKG 684 (712)
Q Consensus 652 ~~~~~~~~l~~~~~~~g~~~eA~-~~~~~~~~~~ 684 (712)
+++.++..++.++...|+.+++. ..+.++...+
T Consensus 154 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 154 NNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp TCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999888888 5566665544
No 149
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.51 E-value=7.8e-06 Score=78.39 Aligned_cols=205 Identities=9% Similarity=-0.043 Sum_probs=138.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhh---HHHHHHHHHhcCChHHHHHHhccC
Q 005136 436 FAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFL---GTALTDTYAKSGDIESSRRVFDRM 512 (712)
Q Consensus 436 ~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~ 512 (712)
...+.++......|+..++..+...+.-.-+ .+.......+... +...+..+...|++++|...++..
T Consensus 31 ~~~~s~~e~g~~~~~~~~l~~i~~~l~~~~~---------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~ 101 (293)
T 3u3w_A 31 QSEVSRIESGAVYPSMDILQGIAAKLQIPII---------HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNE 101 (293)
T ss_dssp HHHHHHHHTTSCCCCHHHHHHHHHHHTCCTH---------HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhCcCHH---------HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3445555444456777777766665543221 1111111222222 223456778889999999999876
Q ss_pred CCCC---cc------hHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHhcccCcHHHHHHHHHhc
Q 005136 513 PDKN---EI------SWTVMVRGLAESGYAKESINLFEEMEKTSIT-PN----ELTILSVLFACSHSGLVDKGLKYFNSM 578 (712)
Q Consensus 513 ~~~~---~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 578 (712)
.+.. .. .+..+...+...|++++|+..++++.+.... ++ ..+++.+...|...|++++|+.+|+++
T Consensus 102 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 181 (293)
T 3u3w_A 102 LKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQI 181 (293)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5321 11 2334566667778999999999999884322 22 236888999999999999999999988
Q ss_pred chhc----CCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHhhcC-CHHHHHHHHH
Q 005136 579 EPIY----NIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-------PFEPD-SNAWASLLSGCKTYK-NEQIAERAVK 644 (712)
Q Consensus 579 ~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g-~~~~a~~~~~ 644 (712)
.+.. +..+ ...++..++.+|.+.|++++|...+++. ...+. ...+..+..++...| ++++|...++
T Consensus 182 l~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~ 261 (293)
T 3u3w_A 182 LKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 7321 2223 3457889999999999999999998876 11222 677888888899999 4699999999
Q ss_pred HHhcc
Q 005136 645 NLWKL 649 (712)
Q Consensus 645 ~~~~~ 649 (712)
+++++
T Consensus 262 ~Al~i 266 (293)
T 3u3w_A 262 KASFF 266 (293)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 150
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.50 E-value=9.6e-07 Score=76.23 Aligned_cols=97 Identities=8% Similarity=0.002 Sum_probs=62.0
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIY 664 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 664 (712)
+...+..++..+.+.|++++|+..|++. ...| +...+..+..+|...|++++|+..++++++++|+++.++..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4555666666666666666666666665 2233 3555566666666666666666666666666666666666666666
Q ss_pred HhcCCchhHHHHHHHHHhC
Q 005136 665 ASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 665 ~~~g~~~eA~~~~~~~~~~ 683 (712)
...|++++|+..+++.++.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 6666666666666666553
No 151
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.49 E-value=1.7e-06 Score=83.09 Aligned_cols=162 Identities=9% Similarity=-0.058 Sum_probs=116.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHhccCCC---CCc------chHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC--HH
Q 005136 488 LGTALTDTYAKSGDIESSRRVFDRMPD---KNE------ISWTVMVRGLAESGYAKESINLFEEMEKTSI---TPN--EL 553 (712)
Q Consensus 488 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~p~--~~ 553 (712)
.+...+..+...|++++|.+.++...+ ... ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344556677888899998888875432 111 1233455667778899999999998876321 112 34
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCc-----hHHHHHHHHHhhhcCChHHHHHHHHhC-CC------CC-CH
Q 005136 554 TILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPN-----GRHYTCVVDMLSRSGRLSEAEDFINSM-PF------EP-DS 620 (712)
Q Consensus 554 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~------~p-~~ 620 (712)
+++.+...|...|++++|+.+|+++.+.....|+ ..++..++.+|.+.|++++|...+++. .. .. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888888999999999999999987632111222 258889999999999999999999876 11 11 15
Q ss_pred HHHHHHHHHHhhcCCHHHH-HHHHHHHhcc
Q 005136 621 NAWASLLSGCKTYKNEQIA-ERAVKNLWKL 649 (712)
Q Consensus 621 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 649 (712)
..+..+...|...|++++| ...+++++.+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6778888889999999999 7888888754
No 152
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.48 E-value=5.9e-07 Score=78.77 Aligned_cols=123 Identities=8% Similarity=0.088 Sum_probs=101.4
Q ss_pred hcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH-HhhcCCH-
Q 005136 562 CSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSG-CKTYKNE- 636 (712)
Q Consensus 562 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~g~~- 636 (712)
+...|++++|+..+++.... .| +...+..++.+|...|++++|...+++. ...| +...+..+... +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcc
Confidence 45678899999999888743 55 6788999999999999999999999987 3333 56777777777 7788998
Q ss_pred -HHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCcc
Q 005136 637 -QIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLRK 687 (712)
Q Consensus 637 -~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~ 687 (712)
++|...++++++..|+++.++..++.++...|++++|+..++++++..+..
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 999999999999999999999999999999999999999999999876543
No 153
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.48 E-value=4.1e-07 Score=75.53 Aligned_cols=94 Identities=13% Similarity=0.012 Sum_probs=71.6
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHhhcCCHHHHHHHHHHHhcc------
Q 005136 590 HYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-------------SNAWASLLSGCKTYKNEQIAERAVKNLWKL------ 649 (712)
Q Consensus 590 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------ 649 (712)
.+...+..+.+.|++++|+..|++. ...|+ ...|.....++...|++++|+..+++++++
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3444555566666666666666654 22222 237777777788888888888888888888
Q ss_pred -CCCCCchH----HHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 650 -AEEHPAGY----VLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 650 -~p~~~~~~----~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
+|+++.+| +..|.++...|++++|+..|++.++.
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999 99999999999999999999998874
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.47 E-value=1.6e-06 Score=69.73 Aligned_cols=109 Identities=14% Similarity=0.109 Sum_probs=82.6
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 005136 553 LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSG 629 (712)
Q Consensus 553 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 629 (712)
..+..+...+...|++++|...|++.... .| +...+..++.++...|++++|...+++. ...| +...+..+...
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34555666667777777777777777632 44 5677778888888888888888888776 3334 46677778888
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 005136 630 CKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIY 664 (712)
Q Consensus 630 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 664 (712)
+...|++++|...++++++..|+++.++..++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 88999999999999999999999888887777654
No 155
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.47 E-value=9.2e-07 Score=72.72 Aligned_cols=99 Identities=10% Similarity=0.071 Sum_probs=89.4
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIY 664 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 664 (712)
+...+..++..+...|++++|...+++. ...| +...+..+...+...|++++|...++++++..|+++.++..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 5678888999999999999999999987 3334 5778888888899999999999999999999999999999999999
Q ss_pred HhcCCchhHHHHHHHHHhCCC
Q 005136 665 ASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 665 ~~~g~~~eA~~~~~~~~~~~~ 685 (712)
...|++++|+.++++.++..+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHST
T ss_pred HHhCCHHHHHHHHHHHHhcCc
Confidence 999999999999999988654
No 156
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.46 E-value=4.2e-07 Score=74.76 Aligned_cols=90 Identities=20% Similarity=0.206 Sum_probs=46.3
Q ss_pred HHHHhhhcCChHHHHHHHHhC-CCCCC-H---HHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC---CchHHHHHHHHH
Q 005136 594 VVDMLSRSGRLSEAEDFINSM-PFEPD-S---NAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH---PAGYVLLSNIYA 665 (712)
Q Consensus 594 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 665 (712)
++..+...|++++|...+++. ...|+ . ..+..+..++...|++++|...++++++..|++ +.++..++.++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 344445555555555555544 11222 1 244444444555555555555555555555555 444555555555
Q ss_pred hcCCchhHHHHHHHHHhC
Q 005136 666 SAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 666 ~~g~~~eA~~~~~~~~~~ 683 (712)
..|++++|+..++++++.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 555555555555555543
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.46 E-value=9.1e-07 Score=72.39 Aligned_cols=110 Identities=13% Similarity=-0.026 Sum_probs=81.0
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 005136 553 LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSG 629 (712)
Q Consensus 553 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 629 (712)
..+..+...+...|++++|+..|++..+. .| +...+..++.+|.+.|++++|+..+++. ...| +...+..+..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 34555666677777777777777776632 45 5677778888888888888888888776 3344 36677777778
Q ss_pred HhhcCCHHHHHHHHHHHhccC------CCCCchHHHHHHHHH
Q 005136 630 CKTYKNEQIAERAVKNLWKLA------EEHPAGYVLLSNIYA 665 (712)
Q Consensus 630 ~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 665 (712)
+...|++++|...++++++++ |+++.+...+..+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 888889999999999998888 777777777666544
No 158
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=2.3e-06 Score=72.20 Aligned_cols=113 Identities=10% Similarity=-0.064 Sum_probs=84.4
Q ss_pred CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCc----hHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 005136 551 NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPN----GRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWA 624 (712)
Q Consensus 551 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 624 (712)
+...+..+...+...|++++|+..|++.. ...|+ ...+..++.+|...|++++|...+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQAL---GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHH---TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 34456666666777777777777777766 23454 567777888888888888888888776 3334 466777
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh
Q 005136 625 SLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYAS 666 (712)
Q Consensus 625 ~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 666 (712)
.+..++...|++++|...++++++..|+++.++..+..+..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 788888899999999999999999999988887777766544
No 159
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.42 E-value=7.8e-07 Score=74.59 Aligned_cols=106 Identities=14% Similarity=0.061 Sum_probs=80.7
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 005136 553 LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSG 629 (712)
Q Consensus 553 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 629 (712)
..+..+...+...|++++|+..|+++... .| +...+..++.+|.+.|++++|+..+++. ...| ++..+..+..+
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 34555666777788888888888877633 55 6777888888888888888888888876 3334 35667777788
Q ss_pred HhhcCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 005136 630 CKTYKNEQIAERAVKNLWKLAEEHPAGYVLLS 661 (712)
Q Consensus 630 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 661 (712)
+...|++++|...+++++++.|+++.......
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 88999999999999999999998877655433
No 160
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.42 E-value=5.9e-07 Score=77.41 Aligned_cols=62 Identities=15% Similarity=0.073 Sum_probs=34.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 622 AWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 622 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
.+..+..+|...|++++|+..++++++++|+++.++..+|.+|...|++++|+..+++.++.
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 34444444555555555555555555555555555555555555555555555555555543
No 161
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.39 E-value=5.9e-07 Score=87.94 Aligned_cols=150 Identities=11% Similarity=-0.009 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHh
Q 005136 519 SWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDML 598 (712)
Q Consensus 519 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 598 (712)
.+..+...+...|++++|+..|++.+. +.|+... +...|+.+++...+. ...+..++.+|
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~~ 240 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHHH
Confidence 455566666777788888888887776 3454332 223344444433221 23788899999
Q ss_pred hhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH-HhcCCchhHHH
Q 005136 599 SRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIY-ASAGRWIDAMN 675 (712)
Q Consensus 599 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~eA~~ 675 (712)
.+.|++++|+..+++. ...| +...+..+..+|...|++++|+..++++++++|+++.++..|+.+. ...+..+++..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987 4445 5778888999999999999999999999999999999999999884 45678888999
Q ss_pred HHHHHHhCCCccC
Q 005136 676 VRKLMTEKGLRKS 688 (712)
Q Consensus 676 ~~~~~~~~~~~~~ 688 (712)
.+++|.+..+...
T Consensus 321 ~~~~~l~~~p~~~ 333 (338)
T 2if4_A 321 MYKGIFKGKDEGG 333 (338)
T ss_dssp -------------
T ss_pred HHHHhhCCCCCCC
Confidence 9999987655443
No 162
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.36 E-value=4.1e-07 Score=81.52 Aligned_cols=120 Identities=9% Similarity=-0.052 Sum_probs=90.6
Q ss_pred cccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-----------------HHHH
Q 005136 563 SHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-----------------SNAW 623 (712)
Q Consensus 563 ~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----------------~~~~ 623 (712)
...|+++++.+.|+..... .+ ....+..++..+.+.|++++|...|++. ...|+ ...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEE---KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp -------CCCSGGGCCHHH---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHH---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 3445566665555543311 22 3556777888888999999999988876 22221 2677
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 624 ASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 624 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
..+..++...|++++|+..++++++.+|+++.++..++.+|...|++++|++.+++.++..+
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 88888899999999999999999999999999999999999999999999999999987653
No 163
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.36 E-value=1.9e-07 Score=75.21 Aligned_cols=60 Identities=20% Similarity=0.164 Sum_probs=30.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 623 WASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 623 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
+..+...+...|++++|+..++++++.+|+++.++..++.++.+.|++++|++.+++.++
T Consensus 30 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 30 YLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444555555555555555555555555555555555555555555555554444
No 164
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.35 E-value=2.4e-06 Score=73.85 Aligned_cols=98 Identities=9% Similarity=0.059 Sum_probs=88.0
Q ss_pred hHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 005136 588 GRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYA 665 (712)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 665 (712)
...+..++..+...|++++|...+++. ...| +...+..+...+...|++++|...++++++..|+++.++..++.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 456778899999999999999999987 3334 57788888888999999999999999999999999999999999999
Q ss_pred hcCCchhHHHHHHHHHhCCC
Q 005136 666 SAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 666 ~~g~~~eA~~~~~~~~~~~~ 685 (712)
..|++++|+++++++++..+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p 112 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKP 112 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHST
T ss_pred HhccHHHHHHHHHHHHHhCC
Confidence 99999999999999988654
No 165
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.34 E-value=1.3e-06 Score=71.85 Aligned_cols=107 Identities=11% Similarity=0.046 Sum_probs=55.9
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CC----CCC----HHHH
Q 005136 554 TILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PF----EPD----SNAW 623 (712)
Q Consensus 554 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~ 623 (712)
.+..+...+...|++++|...|+++... .| +...+..++.++...|++++|...+++. .. .++ ...+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL---DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3445555555666666666666655522 23 4455555555566666666666555554 11 111 3444
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 005136 624 ASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIY 664 (712)
Q Consensus 624 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 664 (712)
..+...+...|++++|...++++++..| ++.....++.+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 4455555555566666666665555555 344444444443
No 166
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.33 E-value=1.2e-06 Score=90.08 Aligned_cols=117 Identities=9% Similarity=0.020 Sum_probs=95.9
Q ss_pred HHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCC
Q 005136 559 LFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKN 635 (712)
Q Consensus 559 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 635 (712)
...+...|++++|++.|+++.+. .| +...+..++.+|.+.|++++|++.+++. ...| +...+..+..+|...|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 34566778888888888888743 56 6788889999999999999999999887 4445 47778888888999999
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHH--HHhcCCchhHHHHHH
Q 005136 636 EQIAERAVKNLWKLAEEHPAGYVLLSNI--YASAGRWIDAMNVRK 678 (712)
Q Consensus 636 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~eA~~~~~ 678 (712)
+++|++.+++++++.|+++.++..++.+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999988 889999999999988
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.33 E-value=2.3e-06 Score=71.11 Aligned_cols=112 Identities=10% Similarity=-0.094 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 005136 551 NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLL 627 (712)
Q Consensus 551 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 627 (712)
+...+..+...+...|++++|+..|++.... .| +...+..++.++...|++++|...+++. ...| +...+..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 4556677777777778888888877777633 44 5677788888888888888888888776 3334 466777788
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCC-----CCchHHHHHHHHH
Q 005136 628 SGCKTYKNEQIAERAVKNLWKLAEE-----HPAGYVLLSNIYA 665 (712)
Q Consensus 628 ~~~~~~g~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~~~ 665 (712)
.++...|++++|...++++++..|+ +..+...+..+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999888877 4555555554433
No 168
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.32 E-value=2.8e-06 Score=87.00 Aligned_cols=159 Identities=6% Similarity=-0.003 Sum_probs=107.0
Q ss_pred ChHHHHHHhccCCC---CCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHh
Q 005136 501 DIESSRRVFDRMPD---KNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNS 577 (712)
Q Consensus 501 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 577 (712)
++++|...|+.... .....|..+...+.+.|++++|+..|++.++. .|+...+ . .+... +
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~----~ 311 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESK----A 311 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHH----H
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHH----H
Confidence 44444444443332 12335666677777777777777777777762 3322110 0 00000 0
Q ss_pred cchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCC
Q 005136 578 MEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHP 654 (712)
Q Consensus 578 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 654 (712)
. .+ ....|..++.+|.+.|++++|+..+++. ...| +...+..+..+|...|++++|...++++++++|+++
T Consensus 312 ~------~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~ 385 (457)
T 1kt0_A 312 S------ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385 (457)
T ss_dssp H------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred H------HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 0 11 3567888999999999999999999887 3344 477888888899999999999999999999999999
Q ss_pred chHHHHHHHHHhcCCchhHHH-HHHHHHh
Q 005136 655 AGYVLLSNIYASAGRWIDAMN-VRKLMTE 682 (712)
Q Consensus 655 ~~~~~l~~~~~~~g~~~eA~~-~~~~~~~ 682 (712)
.++..++.++.+.|++++|.. .+++|..
T Consensus 386 ~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 386 AARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999988875 4555544
No 169
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.31 E-value=4e-06 Score=75.25 Aligned_cols=156 Identities=10% Similarity=-0.017 Sum_probs=89.6
Q ss_pred ccCChHHHHH---HhhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHhhHHHHHHHHhcccchH
Q 005136 130 KHGRVEESMW---YFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLES----GVKP-NEVTFSSICKACAEINDFR 201 (712)
Q Consensus 130 ~~g~~~~a~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~~~~~ 201 (712)
..|++++|.+ ++...+.....++..+...+...|++++|...+++..+. |..| ....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 554433344556677777777777777777777776552 1111 2345666777777888888
Q ss_pred HHHHHHHHHHHhC--CC----CCccHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhh
Q 005136 202 LGLSVFGLIFKAG--FE----KHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDE 275 (712)
Q Consensus 202 ~a~~~~~~~~~~~--~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 275 (712)
+|...++...+.. .+ .....+..+...+...|++++|...+++.. .+...
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al------------------------~~~~~ 139 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL------------------------VYAQQ 139 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH------------------------HHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH------------------------HHHHh
Confidence 8888887766541 11 113345666667777777777777776332 22222
Q ss_pred CCCCC--ceeHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005136 276 MPERN--EVSWSVMIARYNQSGYPEEAFRLFRQMTR 309 (712)
Q Consensus 276 ~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 309 (712)
...+. ..++..+...+...|++++|.+.+++..+
T Consensus 140 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 140 ADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 21111 12345556666667777777766666543
No 170
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.31 E-value=1.2e-06 Score=71.65 Aligned_cols=94 Identities=11% Similarity=0.086 Sum_probs=51.2
Q ss_pred HHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CC----CCC----HHHHHH
Q 005136 556 LSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PF----EPD----SNAWAS 625 (712)
Q Consensus 556 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~~ 625 (712)
..+...+.+.|++++|+..|++..+ +.| +...+..++.+|.+.|++++|+..+++. .. .++ ...+..
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~---~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIE---LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3444444555555555555555442 234 3445555555555555555555555543 11 111 124455
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhccCCC
Q 005136 626 LLSGCKTYKNEQIAERAVKNLWKLAEE 652 (712)
Q Consensus 626 l~~~~~~~g~~~~a~~~~~~~~~~~p~ 652 (712)
+..++...|++++|++.++++++..|+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 556677777888888888877777665
No 171
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.30 E-value=2e-06 Score=69.58 Aligned_cols=97 Identities=9% Similarity=0.022 Sum_probs=63.0
Q ss_pred HHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHh
Q 005136 555 ILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCK 631 (712)
Q Consensus 555 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~ 631 (712)
+..+...+.+.|++++|+..|+++... .| +...+..++.++...|++++|+..+++. ...|+ ...+..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 334455566667777777777766632 55 5667777777777777777777777776 33443 566667777777
Q ss_pred hcCCHHHHHHHHHHHhccCCCCC
Q 005136 632 TYKNEQIAERAVKNLWKLAEEHP 654 (712)
Q Consensus 632 ~~g~~~~a~~~~~~~~~~~p~~~ 654 (712)
..|++++|...++++++.+|+++
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 88888888888888888877754
No 172
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.28 E-value=2.1e-06 Score=84.92 Aligned_cols=136 Identities=12% Similarity=0.012 Sum_probs=101.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHH
Q 005136 519 SWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDM 597 (712)
Q Consensus 519 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 597 (712)
.+..+...+...|++++|++.|++.++. .|... .... .+... ...| +...+..++.+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~---~~~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGA---KLQPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHG---GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHH---HHHHHHHHHHHHHHHH
Confidence 3555666666777777777777766651 11100 0000 11111 1244 57788999999
Q ss_pred hhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHH
Q 005136 598 LSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMN 675 (712)
Q Consensus 598 ~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~ 675 (712)
|.+.|++++|+..+++. ...|+ ...+..+..+|...|++++|...+++++++.|+++.++..++.++...|+.+++.+
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987 55554 77888888889999999999999999999999999999999999999998888765
Q ss_pred H
Q 005136 676 V 676 (712)
Q Consensus 676 ~ 676 (712)
.
T Consensus 363 ~ 363 (370)
T 1ihg_A 363 A 363 (370)
T ss_dssp C
T ss_pred H
Confidence 4
No 173
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.27 E-value=4.4e-06 Score=79.37 Aligned_cols=112 Identities=9% Similarity=-0.093 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHH
Q 005136 551 NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLL 627 (712)
Q Consensus 551 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~ 627 (712)
+...+..+...+...|++++|+..|+++... .| +...+..++.+|.+.|++++|...+++. ...|+ ...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3455666677777777788888777777633 55 5667777777777777777777777775 44443 55666666
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 005136 628 SGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYA 665 (712)
Q Consensus 628 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 665 (712)
.++...|++++|+..+++++++.|+++..+..+++...
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 117 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH
Confidence 66777777777777777777777776554444444433
No 174
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.27 E-value=6.1e-05 Score=72.15 Aligned_cols=234 Identities=12% Similarity=0.034 Sum_probs=110.2
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccC-chHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc-C-C
Q 005136 426 YLEHKQFDLVFAVFNEMLLSGEIPNK-STFSSVLCASASVA-SLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKS-G-D 501 (712)
Q Consensus 426 ~~~~~~~~~a~~~~~~~~~~g~~p~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~ 501 (712)
..+.+..++|+.++++++..+ |+. ..++.--..+...| .++++..++..+.... +-+..+++.-..++.+. + +
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence 344445567777777777653 333 23333333333444 4666666666666543 33444444444444443 4 5
Q ss_pred hHHHHHHhccCCCC---CcchHHHHHHHHHHcCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCc---
Q 005136 502 IESSRRVFDRMPDK---NEISWTVMVRGLAESGYAK--------ESINLFEEMEKTSITPNELTILSVLFACSHSGL--- 567 (712)
Q Consensus 502 ~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--- 567 (712)
++++.++++.+.+. +...|+.-...+...|.++ ++++.++++++.. .-|...|+.....+.+.+.
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence 55666666555533 2334444333333434343 5555555555521 1233444444444444443
Q ss_pred ----HHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHH--HHHHHHhC--CCCCCHHHHHHHHHHHhhcCCHHH
Q 005136 568 ----VDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSE--AEDFINSM--PFEPDSNAWASLLSGCKTYKNEQI 638 (712)
Q Consensus 568 ----~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~--A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~ 638 (712)
++++++.++++.. ..| |...|+.+...+.+.|+... -....=.- .+.|. ...
T Consensus 220 ~~~~~~eELe~~~~aI~---~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~ 280 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIH---LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPD----------------IET 280 (349)
T ss_dssp CHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-------------------------
T ss_pred chHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCCccccccccccccccccccc----------------chh
Confidence 3445555544441 234 44444444444444333200 00000000 00000 122
Q ss_pred HHHHHHHHhcc------CCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 639 AERAVKNLWKL------AEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 639 a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
.......+... .+.++.++..|+.+|...|+.++|.++++.+.+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 281 VEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp -----CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 22222222222 256777888999999999999999999998864
No 175
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.26 E-value=2e-06 Score=84.20 Aligned_cols=118 Identities=8% Similarity=-0.069 Sum_probs=96.6
Q ss_pred cCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----------------HHHHHHH
Q 005136 565 SGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD----------------SNAWASL 626 (712)
Q Consensus 565 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----------------~~~~~~l 626 (712)
.+++++|+..|+.... ..| +...+..++..|.+.|++++|+..|++. ...|+ ...+..+
T Consensus 126 L~~~~~A~~~~~~a~~---~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nl 202 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSE---EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL 202 (336)
T ss_dssp EEEEECCCCGGGCCHH---HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHH---HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHH
Confidence 3455555555554442 245 5667888888889999999999988876 33333 4788888
Q ss_pred HHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 627 LSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 627 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
..++...|++++|+..++++++++|+++.++..++.+|...|++++|+..++++++..+
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P 261 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 261 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999988654
No 176
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.25 E-value=9.9e-05 Score=70.36 Aligned_cols=179 Identities=11% Similarity=0.042 Sum_probs=112.3
Q ss_pred hHHHHHHhccCC---CCCcchHHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCc-HHHHHHHH
Q 005136 502 IESSRRVFDRMP---DKNEISWTVMVRGLAESG--YAKESINLFEEMEKTSITPNELTILSVLFACSHSGL-VDKGLKYF 575 (712)
Q Consensus 502 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~a~~~~ 575 (712)
++++..+++.+. .++..+|+.-...+...+ ++++++..++++.+.. +-|...|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 345555555544 345556666555666666 3677777777777732 2245566655555556666 47777777
Q ss_pred HhcchhcCCCC-chHHHHHHHHHhhhc--------------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhc-----
Q 005136 576 NSMEPIYNIKP-NGRHYTCVVDMLSRS--------------GRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTY----- 633 (712)
Q Consensus 576 ~~~~~~~~~~p-~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----- 633 (712)
+.+.+. .| |...|+....++.+. +.++++++.+++. ...| +...|..+-..+...
T Consensus 169 ~~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHH---CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHH---CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 777633 55 666666666555544 3466777777765 3344 355555444444333
Q ss_pred ------CCHHHHHHHHHHHhccCCCCCchHHHHHHHHH---hcCCchhHHHHHHHHHhCC
Q 005136 634 ------KNEQIAERAVKNLWKLAEEHPAGYVLLSNIYA---SAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 634 ------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~eA~~~~~~~~~~~ 684 (712)
+.++++++.++++++..|++...+..++.... ..|..+++..++.++++-+
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 45788889999999999998776666654432 4677888888888888754
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.25 E-value=6.6e-06 Score=67.43 Aligned_cols=104 Identities=13% Similarity=0.081 Sum_probs=70.1
Q ss_pred HHHHhcccCcHHHHHHHHHhcchhcCCCC-ch---HHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 005136 558 VLFACSHSGLVDKGLKYFNSMEPIYNIKP-NG---RHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD----SNAWASLLS 628 (712)
Q Consensus 558 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~ 628 (712)
+...+...|++++|...|+.+... .| +. ..+..++.++.+.|++++|...+++. ...|+ ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 444555666666666666666533 23 22 46667777777888888888777776 22333 455667777
Q ss_pred HHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 005136 629 GCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIY 664 (712)
Q Consensus 629 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 664 (712)
++...|++++|...++++++..|+++.+......+-
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 788889999999999999988888776555444443
No 178
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.23 E-value=6.5e-06 Score=65.28 Aligned_cols=99 Identities=16% Similarity=0.115 Sum_probs=71.1
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC---CHHHHHHHH
Q 005136 553 LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP---DSNAWASLL 627 (712)
Q Consensus 553 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~ 627 (712)
..+..+...+...|++++|...|+++.+. .| +...+..++.++...|++++|...+++. ...| +...+..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL---DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 44555666666777777777777776632 34 5667777788888888888888888776 3333 466777777
Q ss_pred HHHhhc-CCHHHHHHHHHHHhccCCCCC
Q 005136 628 SGCKTY-KNEQIAERAVKNLWKLAEEHP 654 (712)
Q Consensus 628 ~~~~~~-g~~~~a~~~~~~~~~~~p~~~ 654 (712)
..+... |++++|.+.++++++..|.++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 778888 888888888888888888754
No 179
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.22 E-value=1.4e-06 Score=75.05 Aligned_cols=81 Identities=16% Similarity=0.029 Sum_probs=66.5
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCC-chHHHHHHH
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHP-AGYVLLSNI 663 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 663 (712)
+...+..++.+|.+.|++++|+..+++. ...| +...+..+..++...|++++|...++++++++|+++ .+...|..+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4568888999999999999999999887 4445 477888888889999999999999999999999988 556566555
Q ss_pred HHhc
Q 005136 664 YASA 667 (712)
Q Consensus 664 ~~~~ 667 (712)
....
T Consensus 142 ~~~~ 145 (162)
T 3rkv_A 142 TERR 145 (162)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.22 E-value=4.2e-06 Score=71.85 Aligned_cols=93 Identities=17% Similarity=0.138 Sum_probs=64.6
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC------CCc
Q 005136 590 HYTCVVDMLSRSGRLSEAEDFINSM----PFEPD----SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEE------HPA 655 (712)
Q Consensus 590 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~------~~~ 655 (712)
.+..++..+...|++++|...+++. +..++ ...+..+...+...|++++|...++++++..+. ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 5556666666777777776666654 11111 334555666677788888888888888765322 245
Q ss_pred hHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 656 GYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 656 ~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
++..++.++...|++++|.+.+++.++
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 788899999999999999999988775
No 181
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.21 E-value=1.1e-05 Score=82.39 Aligned_cols=163 Identities=6% Similarity=-0.074 Sum_probs=116.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCH----HHHHHHHHHhcccCcHHHHHHHHHhcchh---cCCCC-chHH
Q 005136 520 WTVMVRGLAESGYAKESINLFEEMEKTS-ITPNE----LTILSVLFACSHSGLVDKGLKYFNSMEPI---YNIKP-NGRH 590 (712)
Q Consensus 520 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~p-~~~~ 590 (712)
+..++..|...|++++|.+.+.++.+.- ..++. ...+.+...+...|+++.|..+++..... .+..+ ...+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 5667788888888888888888766521 11222 12333444556678899998888776521 12223 3567
Q ss_pred HHHHHHHhhhcCChHHHHHHHHhC-----CC--CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC---CC----Cc
Q 005136 591 YTCVVDMLSRSGRLSEAEDFINSM-----PF--EPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAE---EH----PA 655 (712)
Q Consensus 591 ~~~l~~~~~~~g~~~~A~~~~~~~-----~~--~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p---~~----~~ 655 (712)
+..++..|...|++++|..+++++ .. .+. ...+...+..|...|++++|...+++++...+ ++ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 788999999999999999998875 11 222 45667777889999999999999999887532 22 24
Q ss_pred hHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 656 GYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 656 ~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
++..++..+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 667788888999999999998887765
No 182
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.20 E-value=0.00038 Score=66.68 Aligned_cols=175 Identities=10% Similarity=0.033 Sum_probs=119.9
Q ss_pred HHHHHHHHhccCChhhHHHHhhcCCC--C-CcccHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 005136 388 WNSMIGGYGLNGQMEEAKELFDNMPK--R-NDVSWSAIISGYLEHK-QFDLVFAVFNEMLLSGEIPNKSTFSSVLCASAS 463 (712)
Q Consensus 388 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~ 463 (712)
++.+-......+..++|+++++.+.. | +..+|+.-...+...+ .+++++..++.++... +-+...+..--..+..
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 33444444555666789999999874 3 3456777777787888 5999999999999864 3345555544444444
Q ss_pred c-C-chHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChH--------HHHHHhccCCC---CCcchHHHHHHHHHHc
Q 005136 464 V-A-SLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIE--------SSRRVFDRMPD---KNEISWTVMVRGLAES 530 (712)
Q Consensus 464 ~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 530 (712)
. + +++++.+++..+.+.. +-+...+..-..++.+.|.++ ++.+.++++.+ .|...|+.....+...
T Consensus 136 l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTS
T ss_pred hcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 4 5 7889999999988653 445566665555555555555 78888887763 4666788887777777
Q ss_pred CC-------hHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcccC
Q 005136 531 GY-------AKESINLFEEMEKTSITPNE-LTILSVLFACSHSG 566 (712)
Q Consensus 531 ~~-------~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 566 (712)
++ ++++++.+++++. ..|+. ..|+.+-..+.+.|
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTT
T ss_pred cccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcC
Confidence 76 6899999999988 45654 55555554444444
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.19 E-value=1.9e-06 Score=69.35 Aligned_cols=94 Identities=9% Similarity=-0.011 Sum_probs=68.4
Q ss_pred cCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHH
Q 005136 565 SGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAER 641 (712)
Q Consensus 565 ~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 641 (712)
.|++++|+..|+++.+...-.| +...+..++.+|...|++++|+..+++. ...| +...+..+..++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 4667777777777762100035 5677888888888999999999888887 3344 36777778888889999999999
Q ss_pred HHHHHhccCCCCCchHH
Q 005136 642 AVKNLWKLAEEHPAGYV 658 (712)
Q Consensus 642 ~~~~~~~~~p~~~~~~~ 658 (712)
.++++++..|+++.+..
T Consensus 83 ~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhCCCcHHHHH
Confidence 99999999998876554
No 184
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.18 E-value=3.8e-06 Score=68.98 Aligned_cols=96 Identities=7% Similarity=0.053 Sum_probs=57.2
Q ss_pred HHHHHHHHHhhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC-------CchHHH
Q 005136 589 RHYTCVVDMLSRSGRLSEAEDFINSM-PFE-PDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH-------PAGYVL 659 (712)
Q Consensus 589 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~ 659 (712)
..+..++..+...|++++|...+++. ... .+...+..+...+...|++++|...++++++..|++ +.++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 44555666666666666666666655 222 234555555555666666666666666666665554 556666
Q ss_pred HHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 660 LSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 660 l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
++.++...|++++|++.++++++..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC
Confidence 6666666666666666666665543
No 185
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.17 E-value=9.2e-07 Score=70.35 Aligned_cols=92 Identities=9% Similarity=-0.028 Sum_probs=79.1
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC------CchHH
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH------PAGYV 658 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 658 (712)
+...+..++..+.+.|++++|+..+++. ...| +...+..+..++...|++++|+..++++++++|++ +.++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 5667788899999999999999999887 3344 57778888888999999999999999999999998 78899
Q ss_pred HHHHHHHhcCCchhHHHHHH
Q 005136 659 LLSNIYASAGRWIDAMNVRK 678 (712)
Q Consensus 659 ~l~~~~~~~g~~~eA~~~~~ 678 (712)
.++.++...|++++|++.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 99999999999988877654
No 186
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.12 E-value=8.4e-05 Score=77.81 Aligned_cols=167 Identities=11% Similarity=0.011 Sum_probs=129.3
Q ss_pred ChHHHHHHhccCCC---CCcchHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccC
Q 005136 501 DIESSRRVFDRMPD---KNEISWTVMVRGLAESGY----------AKESINLFEEMEKTSITP-NELTILSVLFACSHSG 566 (712)
Q Consensus 501 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 566 (712)
..++|.+.++.+.. .+...|+.-...+...|+ ++++++.++++.+. .| +...|..-...+.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc
Confidence 34566777776652 334456666666666666 88999999999884 45 5577888777888888
Q ss_pred --cHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcC-ChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhc-------
Q 005136 567 --LVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSG-RLSEAEDFINSM-PFEPD-SNAWASLLSGCKTY------- 633 (712)
Q Consensus 567 --~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~------- 633 (712)
+++++++.++++.+. +| |...|+.-..++.+.| .++++++.++++ ...|+ ...|......+...
T Consensus 122 ~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 122 EPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 679999999999843 66 7888888888888888 889999998887 55554 66676665554442
Q ss_pred -------CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchh
Q 005136 634 -------KNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWID 672 (712)
Q Consensus 634 -------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~e 672 (712)
+.++++.+.+++++..+|++..+|..+.+++.+.|++++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999998666
No 187
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.12 E-value=2.9e-06 Score=70.46 Aligned_cols=74 Identities=14% Similarity=0.075 Sum_probs=59.6
Q ss_pred hHHHHHHHHHhhhcCChHHHHHHHHhC-CC-------CCC-HHHH----HHHHHHHhhcCCHHHHHHHHHHHhccCCCCC
Q 005136 588 GRHYTCVVDMLSRSGRLSEAEDFINSM-PF-------EPD-SNAW----ASLLSGCKTYKNEQIAERAVKNLWKLAEEHP 654 (712)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~p~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 654 (712)
...|..++.++.+.|++++|+..+++. .. .|+ ...| .....++...|++++|+..|++++++.|++.
T Consensus 57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 57 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 347788888888888888888877765 34 776 5567 7888889999999999999999999999987
Q ss_pred chHHHHH
Q 005136 655 AGYVLLS 661 (712)
Q Consensus 655 ~~~~~l~ 661 (712)
.++..+.
T Consensus 137 ~~~~~~~ 143 (159)
T 2hr2_A 137 GETPGKE 143 (159)
T ss_dssp SCCTTHH
T ss_pred HHHHHHH
Confidence 7655444
No 188
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.11 E-value=1e-05 Score=62.58 Aligned_cols=65 Identities=18% Similarity=0.104 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 619 DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 619 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
+...+..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++|++.+++.++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46677788888889999999999999999999999999999999999999999999999888764
No 189
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.11 E-value=0.00026 Score=67.49 Aligned_cols=192 Identities=10% Similarity=0.051 Sum_probs=131.8
Q ss_pred hHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC--ChHHHHHHhccCC---CCCcchHHHHHHHHHHcCC-hHHHHHHH
Q 005136 467 LEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSG--DIESSRRVFDRMP---DKNEISWTVMVRGLAESGY-AKESINLF 540 (712)
Q Consensus 467 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~-~~~A~~~~ 540 (712)
++++..++..+.... +-+..++..-..++.+.| .++++..+++.+. ..|...|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 466777777776653 445666666566666666 4788888888876 3466677777777777787 58999999
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHhccc--------------CcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhc---
Q 005136 541 EEMEKTSITP-NELTILSVLFACSHS--------------GLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRS--- 601 (712)
Q Consensus 541 ~~~~~~~~~p-~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--- 601 (712)
+++++. .| |...|+.....+.+. +.++++++.++.... ..| |...|+.+-..+.+.
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCc
Confidence 999984 44 445565554444333 457889999988873 367 777777666555554
Q ss_pred --------CChHHHHHHHHhC-CCCCCHHHHHHHHH-----HHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 005136 602 --------GRLSEAEDFINSM-PFEPDSNAWASLLS-----GCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYA 665 (712)
Q Consensus 602 --------g~~~~A~~~~~~~-~~~p~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 665 (712)
+.++++++.++++ ...|+. .|..+.. .....|..++....+.++.+++|.....|..+...+.
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~~ 320 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 320 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHHH
Confidence 4578888888887 556663 2322211 1224678889999999999999998888877765543
No 190
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.08 E-value=2.8e-05 Score=79.43 Aligned_cols=159 Identities=10% Similarity=-0.032 Sum_probs=119.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCH----------------HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCc
Q 005136 524 VRGLAESGYAKESINLFEEMEKTSITPNE----------------LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPN 587 (712)
Q Consensus 524 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 587 (712)
...+...|++++|++.|.++.+....... ..+..+...|...|++++|.+.+..+....+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45567788889999988888874221111 23678889999999999999999988744333332
Q ss_pred h----HHHHHHHHHhhhcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccC-----
Q 005136 588 G----RHYTCVVDMLSRSGRLSEAEDFINSM-------PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLA----- 650 (712)
Q Consensus 588 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----- 650 (712)
. .+.+.+...+...|++++|..+++.. ...+. ...+..+...+...|++++|...++++....
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 23455666777889999999988765 22233 5667788888999999999999999987642
Q ss_pred -CCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 651 -EEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 651 -p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
|....++..++.+|...|++++|..++++.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22346899999999999999999999998875
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.07 E-value=4.7e-06 Score=81.49 Aligned_cols=151 Identities=12% Similarity=0.023 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccC
Q 005136 487 FLGTALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSG 566 (712)
Q Consensus 487 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 566 (712)
..+..+...+.+.|++++|...|++....++... .+...++.+++...+. ...|..+..++.+.|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~g 244 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKLK 244 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHcC
Confidence 3466778888899999999999998663222111 1122233333332221 136777888888999
Q ss_pred cHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHH-HhhcCCHHHHHHH
Q 005136 567 LVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPDS-NAWASLLSG-CKTYKNEQIAERA 642 (712)
Q Consensus 567 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~-~~~~g~~~~a~~~ 642 (712)
++++|+..++++.+. .| +...+..++.+|...|++++|...|++. ...|+. ..+..+... ....+..+.+...
T Consensus 245 ~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 245 RYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp CCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988733 56 6788899999999999999999999987 556653 333444433 3456677888899
Q ss_pred HHHHhccCCCCCc
Q 005136 643 VKNLWKLAEEHPA 655 (712)
Q Consensus 643 ~~~~~~~~p~~~~ 655 (712)
+++++...|+++.
T Consensus 322 ~~~~l~~~p~~~~ 334 (338)
T 2if4_A 322 YKGIFKGKDEGGA 334 (338)
T ss_dssp -------------
T ss_pred HHHhhCCCCCCCC
Confidence 9999999888653
No 192
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.06 E-value=1.6e-05 Score=59.99 Aligned_cols=72 Identities=11% Similarity=0.039 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHhhcCC---HHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCccCCc
Q 005136 618 PDSNAWASLLSGCKTYKN---EQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLRKSGG 690 (712)
Q Consensus 618 p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~ 690 (712)
+++..+..+..++...++ .++|..+++++++.+|+++.+...||..+.+.|++++|+.+|+++++..+. .|.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~ 78 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD 78 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence 456677777777543433 799999999999999999999999999999999999999999999998766 543
No 193
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.04 E-value=1.9e-06 Score=71.37 Aligned_cols=97 Identities=11% Similarity=0.013 Sum_probs=60.8
Q ss_pred ccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 005136 564 HSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERA 642 (712)
Q Consensus 564 ~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 642 (712)
+.+.+++|++.++...+ +.| +...+..++.++...++++.+...+ +.+++|+..
T Consensus 14 r~~~feeA~~~~~~Ai~---l~P~~aea~~n~G~~l~~l~~~~~g~~al----------------------~~~~eAi~~ 68 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYK---SNPLDADNLTRWGGVLLELSQFHSISDAK----------------------QMIQEAITK 68 (158)
T ss_dssp HHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCHHHHH----------------------HHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHhcccchhhhhH----------------------hHHHHHHHH
Confidence 44556666666666652 255 5666666666666665544222211 125677777
Q ss_pred HHHHhccCCCCCchHHHHHHHHHhcC-----------CchhHHHHHHHHHhCCC
Q 005136 643 VKNLWKLAEEHPAGYVLLSNIYASAG-----------RWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 643 ~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~eA~~~~~~~~~~~~ 685 (712)
++++++++|+++.+|+.||.+|...| ++++|++.|++.++.++
T Consensus 69 le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 69 FEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 77777777777777777777777664 67777777777776543
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.03 E-value=1.1e-05 Score=64.47 Aligned_cols=63 Identities=8% Similarity=-0.047 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 620 SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 620 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
...+..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++|+..+++.++
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444444455555555555555555555555555555555555555555555555555544
No 195
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.01 E-value=1e-05 Score=82.77 Aligned_cols=117 Identities=9% Similarity=-0.029 Sum_probs=91.9
Q ss_pred CcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC----------------HHHHHHHH
Q 005136 566 GLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD----------------SNAWASLL 627 (712)
Q Consensus 566 g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----------------~~~~~~l~ 627 (712)
+++++|+..|+.... ..| ....+..++..|.+.|++++|+..|++. ...|+ ...+..+.
T Consensus 248 ~~~~~A~~~~~~~~~---~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 248 KSFEKAKESWEMDTK---EKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEECCCCGGGSCHH---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHH---HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 344445544444331 133 4556777788888888888888888776 22222 47788888
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 628 SGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 628 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
.+|...|++++|+..++++++++|+++.+++.++.+|...|++++|+..++++++..+
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 8999999999999999999999999999999999999999999999999999988654
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.00 E-value=2.4e-05 Score=59.22 Aligned_cols=82 Identities=15% Similarity=0.221 Sum_probs=63.2
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIY 664 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 664 (712)
+...+..++..+...|++++|...+++. ...| +...+..+...+...|++++|...++++++.+|+++.++..++.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4556777788888888888888888776 2233 4666777777788888888888888888888888888888888887
Q ss_pred HhcC
Q 005136 665 ASAG 668 (712)
Q Consensus 665 ~~~g 668 (712)
.+.|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 7654
No 197
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.99 E-value=1.3e-05 Score=79.16 Aligned_cols=66 Identities=8% Similarity=-0.081 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 620 SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 620 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
...+..+..+|...|++++|+..++++++++|+++.++..++.+|...|++++|++.+++.++..+
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P 338 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 338 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 566788888899999999999999999999999999999999999999999999999999988654
No 198
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.99 E-value=2.9e-05 Score=66.37 Aligned_cols=133 Identities=10% Similarity=0.019 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCH----HHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC----chH
Q 005136 519 SWTVMVRGLAESGYAKESINLFEEMEKTSIT-PNE----LTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP----NGR 589 (712)
Q Consensus 519 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~ 589 (712)
++..+...+...|++++|+..+++..+.... ++. ..+..+...+...|++++|...+++......-.+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3555666777777777777777776552111 111 3566677777788888888888877653211111 244
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCC
Q 005136 590 HYTCVVDMLSRSGRLSEAEDFINSMP----FEPD----SNAWASLLSGCKTYKNEQIAERAVKNLWKLAE 651 (712)
Q Consensus 590 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p 651 (712)
.+..++.++...|++++|...+++.- ..++ ...+..+...+...|++++|...+++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 67778888888999999888887751 1112 34456677778899999999999999887643
No 199
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.97 E-value=2.7e-05 Score=80.00 Aligned_cols=114 Identities=11% Similarity=0.012 Sum_probs=63.4
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCC
Q 005136 526 GLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGR 603 (712)
Q Consensus 526 ~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 603 (712)
.+...|++++|++.+++..+. .| +...+..+..++.+.|++++|++.++++.+ +.| +...+..++.+|.+.|+
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCC
Confidence 344556666666666666663 34 345566666666666677777666666652 244 45666666666767777
Q ss_pred hHHHHHHHHhC-CCCCC-HHHHHHHHHH--HhhcCCHHHHHHHHH
Q 005136 604 LSEAEDFINSM-PFEPD-SNAWASLLSG--CKTYKNEQIAERAVK 644 (712)
Q Consensus 604 ~~~A~~~~~~~-~~~p~-~~~~~~l~~~--~~~~g~~~~a~~~~~ 644 (712)
+++|.+.+++. ...|+ ...+..+..+ +...|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777666665 22222 2223333333 556667777777666
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.91 E-value=8.4e-05 Score=61.42 Aligned_cols=112 Identities=11% Similarity=0.014 Sum_probs=72.8
Q ss_pred cHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHH
Q 005136 567 LVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKT----YKNEQIAERA 642 (712)
Q Consensus 567 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~ 642 (712)
++++|++.|++..+. + .|. .. |+..|...+..++|.++|++.-...+......+...|.. .++.++|..+
T Consensus 10 d~~~A~~~~~~aa~~-g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACEL-N-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHT-T-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcC-C-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 455566666555521 2 122 22 555565555666666666665333455555556555555 6778888888
Q ss_pred HHHHhccCCCCCchHHHHHHHHHh----cCCchhHHHHHHHHHhCCCc
Q 005136 643 VKNLWKLAEEHPAGYVLLSNIYAS----AGRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 643 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~~~ 686 (712)
++++.+. .++.++..|+.+|.. .+++++|++++++..+.|.+
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 8888765 567788888888888 78888888888888877643
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.87 E-value=6.2e-05 Score=76.72 Aligned_cols=122 Identities=11% Similarity=0.020 Sum_probs=90.6
Q ss_pred hcccCcHHHHHHHHHhcchhc-----CCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC---------CCCCC-HHHHHH
Q 005136 562 CSHSGLVDKGLKYFNSMEPIY-----NIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM---------PFEPD-SNAWAS 625 (712)
Q Consensus 562 ~~~~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ 625 (712)
+...|++++|+.++++..... .-+| ...+++.|+.+|...|++++|..++++. +..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 445677777777666554221 1233 3557888899999999999998888775 12333 555788
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhc-----cCCCCCch---HHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 626 LLSGCKTYKNEQIAERAVKNLWK-----LAEEHPAG---YVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 626 l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
+...|..+|++++|+.+++++++ +.|++|.+ ...|..++..+|++.+|...+.++.++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999986 35777654 457777888999999999999999874
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.85 E-value=4e-05 Score=60.58 Aligned_cols=68 Identities=10% Similarity=0.004 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 005136 619 DSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 619 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 686 (712)
+...+..+...+...|++++|+..++++++..|+++.++..++.++.+.|++++|++.+++.++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 45667778888999999999999999999999999999999999999999999999999999986543
No 203
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.80 E-value=0.00024 Score=74.42 Aligned_cols=153 Identities=9% Similarity=0.039 Sum_probs=124.7
Q ss_pred HcC-ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcccCc----------HHHHHHHHHhcchhcCCCC-chHHHHHHH
Q 005136 529 ESG-YAKESINLFEEMEKTSITPNE-LTILSVLFACSHSGL----------VDKGLKYFNSMEPIYNIKP-NGRHYTCVV 595 (712)
Q Consensus 529 ~~~-~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 595 (712)
+.| ..++|++.+++++. +.|+. ..|+.--.++...|+ +++++++++.+... .| +..+|..-.
T Consensus 40 ~~~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~ 114 (567)
T 1dce_A 40 QAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRC 114 (567)
T ss_dssp HTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 344 45788999999999 56765 456655555656666 89999999999843 67 788999999
Q ss_pred HHhhhcC--ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcC-CHHHHHHHHHHHhccCCCCCchHHHHHHHHHhc---
Q 005136 596 DMLSRSG--RLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYK-NEQIAERAVKNLWKLAEEHPAGYVLLSNIYASA--- 667 (712)
Q Consensus 596 ~~~~~~g--~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--- 667 (712)
.++.+.| +++++++.++++ ...| +...|..-..+....| .++++.+.++++++.+|.+..+|...+.++.+.
T Consensus 115 w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 115 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccc
Confidence 9999999 779999999998 4444 5777877777777888 899999999999999999999999999998874
Q ss_pred -----------CCchhHHHHHHHHHhCCCc
Q 005136 668 -----------GRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 668 -----------g~~~eA~~~~~~~~~~~~~ 686 (712)
+++++|++++++.++..+.
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~P~ 224 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFFTDPN 224 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHHHCSS
T ss_pred ccccccccccHHHHHHHHHHHHHHHhhCCC
Confidence 5678999999998876543
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.73 E-value=2.6e-05 Score=64.52 Aligned_cols=103 Identities=12% Similarity=0.068 Sum_probs=80.0
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcH----------HHHHHHHHhcchhcCCCC-chHHHHHH
Q 005136 527 LAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLV----------DKGLKYFNSMEPIYNIKP-NGRHYTCV 594 (712)
Q Consensus 527 ~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~p-~~~~~~~l 594 (712)
..+.+.+++|++.+++..+ +.| +...|..+..++...+++ ++|+..|++.. .+.| +...|..+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL---~ldP~~~~A~~~L 86 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL---LIDPKKDEAVWCI 86 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH---HHCTTCHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHH---HhCcCcHHHHHHH
Confidence 4567789999999999998 456 557788788888888764 58888888887 4477 67788888
Q ss_pred HHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCc
Q 005136 595 VDMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPA 655 (712)
Q Consensus 595 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 655 (712)
+.+|...|++ .|+... ..|++++|++.++++++++|++..
T Consensus 87 G~ay~~lg~l------------~P~~~~---------a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 87 GNAYTSFAFL------------TPDETE---------AKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHHHHHHH------------CCCHHH---------HHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHhccc------------Ccchhh---------hhccHHHHHHHHHHHHHhCCCCHH
Confidence 8888877654 454321 247899999999999999999753
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.71 E-value=0.00011 Score=55.46 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 620 SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 620 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
...+..+...+...|++++|+..++++++..|+++.++..++.++...|++++|+..+++.++..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 456677777899999999999999999999999999999999999999999999999999988653
No 206
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.71 E-value=3.5e-07 Score=88.23 Aligned_cols=263 Identities=11% Similarity=0.096 Sum_probs=174.5
Q ss_pred hhHHHHHHHHHHccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcc
Q 005136 118 EVSWTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEI 197 (712)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 197 (712)
+..|+.|..+..+.|++.+|+..|-+ ..|...|..+|.+..+.|.+++-+..+...++..-.|. .=+.|+-+|++.
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~ayAk~ 129 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFALAKT 129 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHHHHHTS
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHHHHHHHhh
Confidence 44566777777777777777665543 34666778888888888999988888887776543343 334788888888
Q ss_pred cchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCC
Q 005136 198 NDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMP 277 (712)
Q Consensus 198 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 277 (712)
++..+..+++. .|+..-...+.+-|...|.++.|.-+|..+. .|..|..++.+.|++..|.+.-++
T Consensus 130 ~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~is-----N~akLAstLV~L~~yq~AVdaArK-- 195 (624)
T 3lvg_A 130 NRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARK-- 195 (624)
T ss_dssp CSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC-----CCTTTSSSSSSCSGGGSSTTTTTT--
T ss_pred CcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCc-----cHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 87766555442 4666666778888888888888888887554 344444555566666665543222
Q ss_pred CCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHH
Q 005136 278 ERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNAL 357 (712)
Q Consensus 278 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 357 (712)
..++.+|..+..+|...+++.-|.-.=-.++- .|| ....++..|-..|.+++.+.+++.-... -.....+++-|
T Consensus 196 Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTEL 269 (624)
T 3lvg_A 196 ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTEL 269 (624)
T ss_dssp CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHH
T ss_pred cCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHH
Confidence 25778999999999999998877654433332 111 1234666778889999888888776532 13466788888
Q ss_pred HHHHHhcCChHHHHHHHHhhhc-CCCC-------ceeeHHHHHHHHhccCChhhHH
Q 005136 358 IDLYSKCGETKDGRLVFDSIVE-KDVA-------HVVSWNSMIGGYGLNGQMEEAK 405 (712)
Q Consensus 358 ~~~~~~~g~~~~A~~~~~~~~~-~~~~-------~~~~~~~l~~~~~~~~~~~~a~ 405 (712)
.-.|++- +.++..+.++-.-. .++| ....|.-++-.|.+-.+++.|.
T Consensus 270 aILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 270 AILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 8888876 44555444443322 2222 4556777777777777777663
No 207
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.71 E-value=2.3e-05 Score=75.96 Aligned_cols=235 Identities=11% Similarity=0.060 Sum_probs=155.2
Q ss_pred hhHHHHHHHhhccchhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHHHHhhcCC--CCcchHHHHHHHHHh
Q 005136 22 ETCLCLLKDITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVKDLNG--FDLVVHNCMINANIQ 99 (712)
Q Consensus 22 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~ 99 (712)
..|..|.++..+.++..+|.+-| ++++ |+..+..++....+.|++++-...+.-.++ .++.+-+.|+-+|++
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsy---IkA~---Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk 128 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSY---IKAD---DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAK 128 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSS---CCCS---CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHT
T ss_pred cHHHHHHHHHHccCchHHHHHHH---HhCC---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHh
Confidence 35667777777777777776665 3333 666677788888888888877777765533 555667778888888
Q ss_pred cCChHHHHHHHhhCCCCChhHHHHHHHHHHccCChHHHHHHhhhCC------------------------CCCcccHHHH
Q 005136 100 WGNLEEAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERNP------------------------FQNVISWTAA 155 (712)
Q Consensus 100 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------------------------~~~~~~~~~l 155 (712)
.+++.+-.+++. .+|..-...+++-|...|.++.|.-+|..+. ..++.+|-.+
T Consensus 129 ~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV 205 (624)
T 3lvg_A 129 TNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEV 205 (624)
T ss_dssp SCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHH
T ss_pred hCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHH
Confidence 877665543332 3566666667777778888888777775432 1366788888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCCh
Q 005136 156 ICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEV 235 (712)
Q Consensus 156 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 235 (712)
-.+|...+.+.-|--.--.++- .|+ .+..++.-|-..|.+++...+++..+.. -.....+|+-|.-.|++- +.
T Consensus 206 ~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~P 278 (624)
T 3lvg_A 206 CFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KP 278 (624)
T ss_dssp THHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CT
T ss_pred HHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CH
Confidence 8888888888777655444442 222 2334566677788888888888776532 245667888888888765 34
Q ss_pred HHHHHHHhhcCC-----------CCcchHHHHHHHHHhcCCHHHHHHH
Q 005136 236 DLARSVFDRMEK-----------RDVVSWTVILDVFIEMGDLGEARRI 272 (712)
Q Consensus 236 ~~a~~~~~~~~~-----------~~~~~~~~ll~~~~~~~~~~~a~~~ 272 (712)
++..+.++..-. .....|..++-.|..-.+++.|...
T Consensus 279 eKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt 326 (624)
T 3lvg_A 279 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 326 (624)
T ss_dssp THHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH
Confidence 455554443322 2445677777777777777766543
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.56 E-value=0.00083 Score=55.32 Aligned_cols=112 Identities=13% Similarity=0.092 Sum_probs=92.3
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhh----cCChH
Q 005136 530 SGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSR----SGRLS 605 (712)
Q Consensus 530 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 605 (712)
.+++++|++.|++..+.| .|+.. +...|...+.+++|.+.|++..+. -++.....|+.+|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 346889999999999977 44433 777788888899999999998732 477888899999988 88999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHhccC
Q 005136 606 EAEDFINSMPFEPDSNAWASLLSGCKT----YKNEQIAERAVKNLWKLA 650 (712)
Q Consensus 606 ~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 650 (712)
+|..+|++.-...++.....+...|.. .++.++|..+++++.+..
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 999999998445677788888888887 899999999999998864
No 209
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.53 E-value=0.00022 Score=56.70 Aligned_cols=80 Identities=15% Similarity=0.071 Sum_probs=57.3
Q ss_pred HHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHh
Q 005136 571 GLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEP-DSNAWASLLSGCKTYKNEQIAERAVKNLW 647 (712)
Q Consensus 571 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 647 (712)
|+..|++.. ...| +...+..++.+|...|++++|+..+++. ...| +...+..+..++...|++++|...+++++
T Consensus 4 a~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAML---AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHH---TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455566555 2345 5677777888888888888888888776 3334 36667777777888888888888888888
Q ss_pred ccCCCC
Q 005136 648 KLAEEH 653 (712)
Q Consensus 648 ~~~p~~ 653 (712)
+..|++
T Consensus 81 ~~~~~~ 86 (115)
T 2kat_A 81 AAAQSR 86 (115)
T ss_dssp HHHHHH
T ss_pred Hhcccc
Confidence 877653
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.52 E-value=0.00017 Score=55.45 Aligned_cols=82 Identities=16% Similarity=0.125 Sum_probs=60.3
Q ss_pred HHHHHhhhcCChHHHHHHHHhC-CCCCC-HH-HHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCC
Q 005136 593 CVVDMLSRSGRLSEAEDFINSM-PFEPD-SN-AWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGR 669 (712)
Q Consensus 593 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 669 (712)
..+..+.+.|++++|...+++. ...|+ .. .+..+..++...|++++|+..++++++.+|+++.++.. +.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 3566778888899998888887 33443 55 77777777888899999999999999888888876633 44
Q ss_pred chhHHHHHHHHHh
Q 005136 670 WIDAMNVRKLMTE 682 (712)
Q Consensus 670 ~~eA~~~~~~~~~ 682 (712)
+.+|...+++..+
T Consensus 77 ~~~a~~~~~~~~~ 89 (99)
T 2kc7_A 77 VMDILNFYNKDMY 89 (99)
T ss_dssp HHHHHHHHCCTTH
T ss_pred HHHHHHHHHHHhc
Confidence 5666666655443
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.43 E-value=0.0001 Score=56.75 Aligned_cols=58 Identities=19% Similarity=0.239 Sum_probs=37.4
Q ss_pred HHHhhcCCHHHHHHHHHHHhccCCCCCc-hHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 628 SGCKTYKNEQIAERAVKNLWKLAEEHPA-GYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 628 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
..+...|++++|+..++++++.+|+++. ++..++.+|...|++++|++.+++.++.++
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3455666666666666666666666666 666666666666666666666666665443
No 212
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.36 E-value=0.0026 Score=58.06 Aligned_cols=88 Identities=10% Similarity=0.059 Sum_probs=71.1
Q ss_pred hHHHHHHHHhC-CCCCC---HHHHHHHHHHHhh-----cCCHHHHHHHHHHHhccCCCC-CchHHHHHHHHHhc-CCchh
Q 005136 604 LSEAEDFINSM-PFEPD---SNAWASLLSGCKT-----YKNEQIAERAVKNLWKLAEEH-PAGYVLLSNIYASA-GRWID 672 (712)
Q Consensus 604 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~e 672 (712)
..+|...+++. .+.|+ ...+..+...|.. -|+.++|++.+++++++.|+. ..+++.++..++.. |++++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45677777776 56777 4456666666766 499999999999999999975 99999999999885 99999
Q ss_pred HHHHHHHHHhCCCccCCcc
Q 005136 673 AMNVRKLMTEKGLRKSGGC 691 (712)
Q Consensus 673 A~~~~~~~~~~~~~~~~~~ 691 (712)
|.+++++.+...+...|+.
T Consensus 259 a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHHcCCCCCCCCh
Confidence 9999999999877754553
No 213
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.30 E-value=0.00025 Score=54.62 Aligned_cols=66 Identities=12% Similarity=0.059 Sum_probs=48.6
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCC
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEE 652 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~ 652 (712)
+...+..++.+|...|++++|+..|++. ...|+ ...|..+..+|...|++++|+..+++++++.|.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 5667777888888888888888888776 33343 556777777788888888888888888776554
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.24 E-value=0.00049 Score=68.86 Aligned_cols=62 Identities=10% Similarity=0.010 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHhcc-----CCCCC---chHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 621 NAWASLLSGCKTYKNEQIAERAVKNLWKL-----AEEHP---AGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 621 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
.+++.+..+|...|++++|+.+++++++. .|++| ..++.||.+|..+|++++|+.++++.++
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 33445555555555555555555555442 23333 3455566666666666666666665544
No 215
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.18 E-value=0.0014 Score=66.79 Aligned_cols=129 Identities=8% Similarity=-0.039 Sum_probs=71.7
Q ss_pred HhccCChhhHHHHHHHHHHc-----CC-CC-cHHHHHHHHHHHHhcCChHHHHHHHHhhhcC-----C--CC-ceeeHHH
Q 005136 326 LASLKALRSGMHVHAHVLKI-----GI-EK-DVFISNALIDLYSKCGETKDGRLVFDSIVEK-----D--VA-HVVSWNS 390 (712)
Q Consensus 326 ~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~-~~~~~~~ 390 (712)
+...|++++|..+++..++. |. .| ...+++.|..+|...|++++|..++++..+. + .| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44667777777777776653 11 11 2456777777888888888887777665431 1 11 2334555
Q ss_pred HHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCchHH
Q 005136 391 MIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNK-STFSSVLCASASVASLEK 469 (712)
Q Consensus 391 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~-~~~~~ll~~~~~~~~~~~ 469 (712)
|...|...|++++|+.++++. +.+++...... .|+. .+...+-.++...+.+++
T Consensus 399 La~~~~~~G~~~eA~~~~~~A------------------------l~i~~~~lG~~-Hp~~~~~~~~l~~~~~e~~~~~~ 453 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKA------------------------YAILLVTHGPS-HPITKDLEAMRMQTEMELRMFRQ 453 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH------------------------HHHHHHHTCTT-SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH------------------------HHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555554444332 33333332222 2333 334445556667777777
Q ss_pred HHHHHHHHHH
Q 005136 470 GKDLHGKIIK 479 (712)
Q Consensus 470 a~~~~~~~~~ 479 (712)
|+.++..+++
T Consensus 454 ae~~~~~~~~ 463 (490)
T 3n71_A 454 NEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777777765
No 216
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.16 E-value=0.041 Score=42.97 Aligned_cols=142 Identities=13% Similarity=0.082 Sum_probs=97.1
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHH
Q 005136 527 LAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSE 606 (712)
Q Consensus 527 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 606 (712)
+.-.|..++..++..+..+. .+..-++.++--....-+-+-..+.++.+-.-+.+ ..+|+...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 45678888889988888763 23333444443333344555556666655422222 24555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCCc
Q 005136 607 AEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGLR 686 (712)
Q Consensus 607 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~ 686 (712)
....+-.+. .+.......+.....+|+.++..+++..++.-.|-+|+++..++.+|.+.|+..+|.+++.+.=++|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 555555543 233445556667778999999999999987777777999999999999999999999999999999975
Q ss_pred c
Q 005136 687 K 687 (712)
Q Consensus 687 ~ 687 (712)
.
T Consensus 158 E 158 (172)
T 1wy6_A 158 E 158 (172)
T ss_dssp H
T ss_pred H
Confidence 3
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.11 E-value=0.0037 Score=59.77 Aligned_cols=68 Identities=15% Similarity=0.036 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 617 EPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 617 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
..++..+..+...+...|++++|...+++++.++|+ ...|..+++++.-.|++++|.+.+++....++
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 345666666666666678888888888888888864 56777888888888888888888888877554
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.10 E-value=0.0067 Score=58.01 Aligned_cols=137 Identities=11% Similarity=-0.028 Sum_probs=90.2
Q ss_pred CCcchHHHHHHHHH--HcC---ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcc----c----CcHHHHHHHHHhcch
Q 005136 515 KNEISWTVMVRGLA--ESG---YAKESINLFEEMEKTSITPNE-LTILSVLFACSH----S----GLVDKGLKYFNSMEP 580 (712)
Q Consensus 515 ~~~~~~~~l~~~~~--~~~---~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~----~----g~~~~a~~~~~~~~~ 580 (712)
.+...|...+.+.. ..+ +..+|+.+|++.++ +.|+. ..+..+..+|.. . .........++...
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~- 268 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV- 268 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH-
Confidence 45556666655433 223 34678888888888 56764 344443333321 0 01111111222211
Q ss_pred hcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCC
Q 005136 581 IYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM-PFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHP 654 (712)
Q Consensus 581 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 654 (712)
.....| ++..+..++..+...|++++|...++++ ...|+...+..+...+...|+.++|.+.+++++.++|..+
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 112234 7788888888888889999999999998 4568887777777778999999999999999999999864
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.10 E-value=0.0016 Score=65.40 Aligned_cols=85 Identities=11% Similarity=0.091 Sum_probs=46.4
Q ss_pred hhhcCChHHHHHHHHhC-C-----CCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHhcc-----CCCCC---chHHH
Q 005136 598 LSRSGRLSEAEDFINSM-P-----FEPD----SNAWASLLSGCKTYKNEQIAERAVKNLWKL-----AEEHP---AGYVL 659 (712)
Q Consensus 598 ~~~~g~~~~A~~~~~~~-~-----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~p~~~---~~~~~ 659 (712)
+.+.|++++|..++++. . ..|+ ..+++.++.+|...|++++|+.+++++++. .|++| ..++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 33455666666655543 0 1122 334455555566666666666666666542 23333 34556
Q ss_pred HHHHHHhcCCchhHHHHHHHHHh
Q 005136 660 LSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 660 l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
|+.+|..+|++++|+.++++.++
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 66666666666666666666554
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.01 E-value=0.0013 Score=53.66 Aligned_cols=89 Identities=16% Similarity=0.041 Sum_probs=67.9
Q ss_pred cCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcC---ChHHHHHHHHhC-CCC-C--CHHHHHHHHHHHhhcCCHH
Q 005136 565 SGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSG---RLSEAEDFINSM-PFE-P--DSNAWASLLSGCKTYKNEQ 637 (712)
Q Consensus 565 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~ 637 (712)
.+....+.+.|.+.... + .++..+...++.++++.+ +.++++.+++.. ... | ....+-.+.-+|.+.|+++
T Consensus 11 ~~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHH
Confidence 34566777777766522 2 368888889999999988 566899999887 333 5 2455666666789999999
Q ss_pred HHHHHHHHHhccCCCCCc
Q 005136 638 IAERAVKNLWKLAEEHPA 655 (712)
Q Consensus 638 ~a~~~~~~~~~~~p~~~~ 655 (712)
+|.++++++++.+|+|..
T Consensus 89 ~A~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 89 KALKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHhcCCCCHH
Confidence 999999999999999754
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.88 E-value=0.0029 Score=63.28 Aligned_cols=94 Identities=11% Similarity=0.048 Sum_probs=65.8
Q ss_pred cCcHHHHHHHHHhcchhc-----CCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC---------CCCCC-HHHHHHHHH
Q 005136 565 SGLVDKGLKYFNSMEPIY-----NIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM---------PFEPD-SNAWASLLS 628 (712)
Q Consensus 565 ~g~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~ 628 (712)
.|++++|+.++++..... .-+| ...+++.|+.+|...|++++|..++++. +..|+ ..+++.+..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 456666666666554211 1223 2457788888999999999998888875 12333 555788888
Q ss_pred HHhhcCCHHHHHHHHHHHhcc-----CCCCCchHH
Q 005136 629 GCKTYKNEQIAERAVKNLWKL-----AEEHPAGYV 658 (712)
Q Consensus 629 ~~~~~g~~~~a~~~~~~~~~~-----~p~~~~~~~ 658 (712)
.|..+|++++|+.++++++++ .|++|.+-.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 899999999999999999773 577775443
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.78 E-value=0.0066 Score=46.82 Aligned_cols=75 Identities=12% Similarity=-0.007 Sum_probs=58.1
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhC-----C----CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchH
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSM-----P----FEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGY 657 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 657 (712)
+..-...|+..+.+.|++..|..+++.. . ..+....+..+..++.+.|+++.|...+++++++.|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 4455567788888888888888887765 1 123467778888889999999999999999999999998776
Q ss_pred HHHH
Q 005136 658 VLLS 661 (712)
Q Consensus 658 ~~l~ 661 (712)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 6554
No 223
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.75 E-value=0.0061 Score=61.10 Aligned_cols=99 Identities=12% Similarity=-0.026 Sum_probs=69.6
Q ss_pred HhcccCcHHHHHHHHHhcchhc--CCCC----chHHHHHHHHHhhhcCChHHHHHHHHhC---------CCCCC-HHHHH
Q 005136 561 ACSHSGLVDKGLKYFNSMEPIY--NIKP----NGRHYTCVVDMLSRSGRLSEAEDFINSM---------PFEPD-SNAWA 624 (712)
Q Consensus 561 ~~~~~g~~~~a~~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~ 624 (712)
.+...|++++|+.++++..... -+.| ...+++.++.+|...|++++|+.++++. +..|+ ..++.
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445667777777777664221 1222 2457788888898999999998888865 12333 45577
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHhc-----cCCCCCchHHH
Q 005136 625 SLLSGCKTYKNEQIAERAVKNLWK-----LAEEHPAGYVL 659 (712)
Q Consensus 625 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~~ 659 (712)
.+...|..+|++++|+.+++++++ +.|++|.+-..
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 888889999999999999999977 36787765544
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.62 E-value=0.058 Score=59.83 Aligned_cols=151 Identities=13% Similarity=0.026 Sum_probs=85.6
Q ss_pred HhcCCChhHhHH-HHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHccCChHHHHHHhhhC
Q 005136 66 YLGSRKSLEANE-IVKDLNGFDLVVHNCMINANIQWGNLEEAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERN 144 (712)
Q Consensus 66 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 144 (712)
....++++.|.+ ++..++. ......++..+.+.|.++.|..+.+. . ..-.......|++++|.++...+
T Consensus 609 ~~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~~~~~~~ 678 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLARDLLTDE 678 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHHHHHHhh
Confidence 345677777766 4433220 11225666666677777777665531 1 11133445677777777777665
Q ss_pred CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHH
Q 005136 145 PFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNS 224 (712)
Q Consensus 145 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 224 (712)
. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+...++.+.....| -++.
T Consensus 679 ~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~ 741 (814)
T 3mkq_A 679 S--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNL 741 (814)
T ss_dssp C--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHH
T ss_pred C--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHH
Confidence 4 446777788888888888888888777642 2233344444556555555544444433 2233
Q ss_pred HHHHHHccCChHHHHHHHh
Q 005136 225 LITLSLKMGEVDLARSVFD 243 (712)
Q Consensus 225 li~~~~~~~~~~~a~~~~~ 243 (712)
...++.+.|++++|.+++.
T Consensus 742 A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 742 AFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 3344555566666666554
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.48 E-value=0.0075 Score=46.48 Aligned_cols=67 Identities=13% Similarity=-0.044 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC-------CCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 619 DSNAWASLLSGCKTYKNEQIAERAVKNLWKLA-------EEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 619 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
+......+...+...|+++.|..+++++++.. +..+.++..|+.++.+.|++++|+.+++++++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 34455667778899999999999999998853 23467899999999999999999999999987544
No 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.46 E-value=0.036 Score=61.56 Aligned_cols=188 Identities=10% Similarity=0.073 Sum_probs=103.8
Q ss_pred HHHhcCChhHHHH-HHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChH
Q 005136 425 GYLEHKQFDLVFA-VFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIE 503 (712)
Q Consensus 425 ~~~~~~~~~~a~~-~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 503 (712)
.....+++++|.+ ++.. + |+......++..+.+.|.++.|.++.+.- ..-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHH
Confidence 3345666766655 4311 1 11222255666666777777776654211 11133456778999
Q ss_pred HHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcC
Q 005136 504 SSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYN 583 (712)
Q Consensus 504 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 583 (712)
+|.++.+.+. +...|..+...+.+.++++.|.+.|.++.+ |..+...+...|+.+...++-+..... +
T Consensus 670 ~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~-~ 737 (814)
T 3mkq_A 670 LARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT-G 737 (814)
T ss_dssp HHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-C
Confidence 9988887764 557888899999999999999888887643 333444444455555544443333310 1
Q ss_pred CCCchHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCC---CchHHHH
Q 005136 584 IKPNGRHYTCVVDMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEH---PAGYVLL 660 (712)
Q Consensus 584 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 660 (712)
-++.-..+|.+.|++++|++++.+ .+++++|..+.++ ..|.. +.+...+
T Consensus 738 ------~~~~A~~~~~~~g~~~~a~~~~~~-------------------~~~~~~A~~lA~~---~~~~~~~i~~~~~~~ 789 (814)
T 3mkq_A 738 ------KFNLAFNAYWIAGDIQGAKDLLIK-------------------SQRFSEAAFLGST---YGLGDNEVNDIVTKW 789 (814)
T ss_dssp ------CHHHHHHHHHHHTCHHHHHHHHHH-------------------TTCHHHHHHHHHH---TTCCHHHHHHHHHHH
T ss_pred ------chHHHHHHHHHcCCHHHHHHHHHH-------------------cCChHHHHHHHHH---hCCChHHHHHHHHHH
Confidence 112223334455666655555554 4466666665554 22221 2344445
Q ss_pred HHHHHhcCCc
Q 005136 661 SNIYASAGRW 670 (712)
Q Consensus 661 ~~~~~~~g~~ 670 (712)
...+...|+.
T Consensus 790 ~~~L~~~~~~ 799 (814)
T 3mkq_A 790 KENLILNGKN 799 (814)
T ss_dssp HHHHHTTTCH
T ss_pred HHHHHhccch
Confidence 5555556653
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.43 E-value=0.0084 Score=48.96 Aligned_cols=67 Identities=7% Similarity=-0.079 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHhhcC---CHHHHHHHHHHHhccC-C-CCCchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 618 PDSNAWASLLSGCKTYK---NEQIAERAVKNLWKLA-E-EHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 618 p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
++..+...+.+++.+.+ +.++++.+++.+++.+ | ++.+.++.|+..+.+.|++++|+++++++++..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 101 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 56666666666666666 5557777777776666 5 346667777777777777777777777666543
No 228
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.40 E-value=0.6 Score=48.79 Aligned_cols=263 Identities=12% Similarity=0.055 Sum_probs=126.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHh-cCC
Q 005136 353 ISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLE-HKQ 431 (712)
Q Consensus 353 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~-~~~ 431 (712)
.-...+..+.+.+++.....++.. .+.+...-.....+....|+..+|......+ ... ...
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~l--------------W~~~~~~ 135 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKEL--------------WLTGKSQ 135 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------HSCSSCC
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHH--------------HhCCCCC
Confidence 334555666667776665554432 1233444455566666677765553322211 110 112
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchh-hHHHHHHHHHhcCChHHHHHHhc
Q 005136 432 FDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVF-LGTALTDTYAKSGDIESSRRVFD 510 (712)
Q Consensus 432 ~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~ 510 (712)
.+.+..+|..+.+.|.......+..+ ......|+...|..+...+ +++.. ....++..+. +...+.....
T Consensus 136 p~~c~~l~~~~~~~g~lt~~~~~~R~-~~al~~~~~~~a~~l~~~l-----~~~~~~~a~~~~al~~---~p~~~~~~~~ 206 (618)
T 1qsa_A 136 PNACDKLFSVWRASGKQDPLAYLERI-RLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLAN---NPNTVLTFAR 206 (618)
T ss_dssp CTHHHHHHHHHHHTTCSCHHHHHHHH-HHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHH---CGGGHHHHHH
T ss_pred cHHHHHHHHHHHHCCCCCHHHHHHHH-HHHHHCCCHHHHHHHHHhC-----CHHHHHHHHHHHHHHh---ChHhHHHHHh
Confidence 33334555555554433222222222 2333445555555544322 22221 2222332222 2333333333
Q ss_pred cCCCCCcc---hHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH----HHHHHHHhcccCcHHHHHHHHHhcchhcC
Q 005136 511 RMPDKNEI---SWTVMVRGLAESGYAKESINLFEEMEKTSITPNELT----ILSVLFACSHSGLVDKGLKYFNSMEPIYN 583 (712)
Q Consensus 511 ~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 583 (712)
.. .++.. .+...+.-+. ..+.+.|...+......+ ..+... ...+.......+...++...+......
T Consensus 207 ~~-~~~~~~~~~~~~~~~rla-r~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~-- 281 (618)
T 1qsa_A 207 TT-GATDFTRQMAAVAFASVA-RQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR-- 281 (618)
T ss_dssp HS-CCCHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--
T ss_pred cc-CCChhhHHHHHHHHHHHH-hcCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--
Confidence 32 22221 1111222223 337788888888876543 223222 223333444555355556666554311
Q ss_pred CCCchHHHHHHHHHhhhcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 005136 584 IKPNGRHYTCVVDMLSRSGRLSEAEDFINSMPFEP--DSNAWASLLSGCKTYKNEQIAERAVKNLWK 648 (712)
Q Consensus 584 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 648 (712)
.++.....-.+....+.|+++.|...|+.|+..+ ...-.--+..++...|+.++|..+++++.+
T Consensus 282 -~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 282 -SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp -CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -CCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 2333334444445557788988888888885432 233233344456678888888888888865
No 229
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.39 E-value=0.012 Score=44.03 Aligned_cols=70 Identities=11% Similarity=-0.011 Sum_probs=52.0
Q ss_pred CchHHHHHHHHHhhhcCC---hHHHHHHHHhC-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCc
Q 005136 586 PNGRHYTCVVDMLSRSGR---LSEAEDFINSM-PFEPD-SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPA 655 (712)
Q Consensus 586 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 655 (712)
+++..+..++.++...++ .++|..++++. ...|+ ...+..+...+...|++++|+..|+++++.+|+++.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 367777788887764443 68888888887 44555 555666666688899999999999999988888443
No 230
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.32 E-value=1.6 Score=47.41 Aligned_cols=24 Identities=17% Similarity=-0.009 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 005136 152 WTAAICGFVQNGFSFEALKLFLKL 175 (712)
Q Consensus 152 ~~~li~~~~~~g~~~~A~~~~~~m 175 (712)
...++.-|.+.|.+.+|+.+.-+.
T Consensus 148 v~~iv~~cl~hnae~~AvdLalE~ 171 (963)
T 4ady_A 148 FERMIEKCLKASELKLALGIALEG 171 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHH
Confidence 455666666777777776665544
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.19 E-value=0.021 Score=45.76 Aligned_cols=51 Identities=10% Similarity=0.042 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 634 KNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 634 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
+|.++|.++|+.++++....+-++...+.--.++|+...|++++.+.+..+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 455555555555544433333344444444445555555555555544433
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.62 E-value=0.01 Score=54.19 Aligned_cols=105 Identities=10% Similarity=0.145 Sum_probs=64.6
Q ss_pred HHHHHHHHHhcchhcCCCCc---hHHHHHHHHHhhh-----cCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHhh-cCC
Q 005136 568 VDKGLKYFNSMEPIYNIKPN---GRHYTCVVDMLSR-----SGRLSEAEDFINSM-PFEPD--SNAWASLLSGCKT-YKN 635 (712)
Q Consensus 568 ~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~-~g~ 635 (712)
...|...+++.. .+.|+ ...+..++..|.. -|+.++|.+.|++. .+.|+ ..+.......++. .|+
T Consensus 179 l~~A~a~lerAl---eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERAC---DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHH---HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHH---HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 445555555555 33554 4466777777776 47888888888776 45553 5555555665555 488
Q ss_pred HHHHHHHHHHHhccCCCC-CchHHHHHHHHHhcCCchhHHHHHHHHH
Q 005136 636 EQIAERAVKNLWKLAEEH-PAGYVLLSNIYASAGRWIDAMNVRKLMT 681 (712)
Q Consensus 636 ~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~eA~~~~~~~~ 681 (712)
.+++.+.++++++..|.. |. +.+...+..++|..+++++.
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~------~~lan~~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPH------NKLLVILSQKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSS------CHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHcCCCCCCCC------hhHHHHHHHHHHHHHHHHhH
Confidence 888888888888877663 33 12233344556666665543
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.61 E-value=0.19 Score=42.23 Aligned_cols=45 Identities=11% Similarity=0.362 Sum_probs=23.9
Q ss_pred HhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHH
Q 005136 497 AKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEM 543 (712)
Q Consensus 497 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 543 (712)
...|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+.
T Consensus 16 L~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 4455555555555443 23445555555555555555555555543
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.54 E-value=0.096 Score=41.02 Aligned_cols=90 Identities=14% Similarity=0.013 Sum_probs=59.2
Q ss_pred cHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHhhcCCHHHH
Q 005136 567 LVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSE---AEDFINSM-PFE-P--DSNAWASLLSGCKTYKNEQIA 639 (712)
Q Consensus 567 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~a 639 (712)
....+.+-|.+.... + .|+..+-..++.++++..+..+ ++.+++.+ ... | .....-.+.-++.+.|+++.|
T Consensus 16 ~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 334445555444321 2 2667777778888888776655 77777776 322 4 233344555568899999999
Q ss_pred HHHHHHHhccCCCCCchHH
Q 005136 640 ERAVKNLWKLAEEHPAGYV 658 (712)
Q Consensus 640 ~~~~~~~~~~~p~~~~~~~ 658 (712)
.+.++.+++.+|+|..+..
T Consensus 94 ~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHH
Confidence 9999999999998765433
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.38 E-value=0.042 Score=43.03 Aligned_cols=69 Identities=6% Similarity=-0.100 Sum_probs=59.7
Q ss_pred CCCHHHHHHHHHHHhhcCCHHH---HHHHHHHHhccC-C-CCCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 617 EPDSNAWASLLSGCKTYKNEQI---AERAVKNLWKLA-E-EHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 617 ~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
.|+..+-..+.+++.++++... ++.+++.++... | .....++.|+..+.+.|+|++|+++++.+++..+
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 105 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 4788888899999888886665 899999998876 5 4678999999999999999999999999998654
No 236
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.06 E-value=0.36 Score=40.47 Aligned_cols=128 Identities=10% Similarity=0.042 Sum_probs=84.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCCh
Q 005136 525 RGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRL 604 (712)
Q Consensus 525 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 604 (712)
....+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+.. | +..+.-.|.-.|+.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-------D---~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH-------S---FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-------C---HHHHHHHHHHHTCH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-------C---HHHHHHHHHHhCCH
Confidence 4456788999998887765 467789999999999999999999998886 2 33445556667777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHh-cCCchhHHHHHHHH
Q 005136 605 SEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYAS-AGRWIDAMNVRKLM 680 (712)
Q Consensus 605 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~~eA~~~~~~~ 680 (712)
+.-.++-+....+.+. +.....+.-.|+++++.+++.+.-. ..++....+ -|-.+.|.++.+.+
T Consensus 77 e~L~kla~iA~~~g~~---n~af~~~l~lGdv~~~i~lL~~~~r---------~~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 77 NKLSKMQNIAQTREDF---GSMLLNTFYNNSTKERSSIFAEGGS---------LPLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHTTCH---HHHHHHHHHHTCHHHHHHHHHHTTC---------HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCccH---HHHHHHHHHcCCHHHHHHHHHHCCC---------hHHHHHHHHHcCcHHHHHHHHHHh
Confidence 6655554443222222 2333445678999999998876532 123334443 35666677776654
No 237
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.97 E-value=0.17 Score=40.37 Aligned_cols=86 Identities=12% Similarity=0.042 Sum_probs=58.4
Q ss_pred cHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChH---HHHHHHHhC-CCCC-C-HHHHHHHHHHHhhcCCHHHHH
Q 005136 567 LVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLS---EAEDFINSM-PFEP-D-SNAWASLLSGCKTYKNEQIAE 640 (712)
Q Consensus 567 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p-~-~~~~~~l~~~~~~~g~~~~a~ 640 (712)
+.....+-|..-. +-.|+..+--.++.++++..+.+ +++.+++.+ ...| + ...+-.+.-++.+.|++++|.
T Consensus 21 eL~~lr~qY~~E~---~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar 97 (144)
T 1y8m_A 21 QLEILRQQVVSEG---GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAK 97 (144)
T ss_dssp HHHHHHHHHHHTT---STTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHhc---cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHH
Confidence 3444444444331 22577888888888888877644 577777776 3344 2 344445555688999999999
Q ss_pred HHHHHHhccCCCCCc
Q 005136 641 RAVKNLWKLAEEHPA 655 (712)
Q Consensus 641 ~~~~~~~~~~p~~~~ 655 (712)
++.+.+++.+|+|..
T Consensus 98 ~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 98 RYVDTLFEHERNNKQ 112 (144)
T ss_dssp HHHHHHHHTCCCCHH
T ss_pred HHHHHHHhcCCCcHH
Confidence 999999999998753
No 238
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.33 E-value=7.4 Score=42.47 Aligned_cols=51 Identities=12% Similarity=0.170 Sum_probs=27.1
Q ss_pred HHHhcCCHHHHHHHHhhCCCC----Cce--eHHHHHHHHHhcCChhHHHHHHHHHHh
Q 005136 259 VFIEMGDLGEARRIFDEMPER----NEV--SWSVMIARYNQSGYPEEAFRLFRQMTR 309 (712)
Q Consensus 259 ~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~ 309 (712)
+....|+.+++..+++..... +.. .-..+.-+....|...++..++.....
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~ 439 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIV 439 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc
Confidence 355667777777777766541 111 122233344555555566666666543
No 239
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.25 E-value=0.092 Score=41.26 Aligned_cols=71 Identities=13% Similarity=0.100 Sum_probs=48.9
Q ss_pred CCchHHHHHHHHHhhhcCCh---HHHHHHHHhC-CCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCc
Q 005136 585 KPNGRHYTCVVDMLSRSGRL---SEAEDFINSM-PFEPD--SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPA 655 (712)
Q Consensus 585 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 655 (712)
.|++.+--.++.++++..+. .+++.+++.+ ...|. ...+-.+.-++.+.|+++.|.++.+.+++..|+|..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 56667777777778777654 3567777666 23342 444555566688888888888888888888888654
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.03 E-value=0.91 Score=36.55 Aligned_cols=116 Identities=10% Similarity=0.209 Sum_probs=80.7
Q ss_pred CCCceeHHHHHHHHHhcCCh------hHHHHHHHHHHhCCCCCCHH----HHHHHHHH---HhccCChhhHHHHHHHHHH
Q 005136 278 ERNEVSWSVMIARYNQSGYP------EEAFRLFRQMTRYSFKPNTS----CFSIVLSA---LASLKALRSGMHVHAHVLK 344 (712)
Q Consensus 278 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~m~~~~~~p~~~----~~~~ll~~---~~~~~~~~~a~~~~~~~~~ 344 (712)
..|..+|-..+...-+.|++ ++..++|++... .++|+.. .|..+.-- +...++.+.|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34666777777777777888 788888888766 4566531 11111111 1233789999999999987
Q ss_pred cCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHH
Q 005136 345 IGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGY 395 (712)
Q Consensus 345 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 395 (712)
.+-. -..+|....+.-.+.|++..|++++......++.+.......++.+
T Consensus 89 ~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl 138 (161)
T 4h7y_A 89 NCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNL 138 (161)
T ss_dssp HCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHH
T ss_pred HhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhh
Confidence 6333 3788888888889999999999999999888865555555555443
No 241
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.65 E-value=7.9 Score=40.42 Aligned_cols=444 Identities=8% Similarity=-0.003 Sum_probs=215.5
Q ss_pred cCCChhHhHHHHhhcCCCCcc---hHHHHHHHHHhcCChHHHHHHHhhCCCC-C-hhHHHHHHHHHHccCChHHHHHHhh
Q 005136 68 GSRKSLEANEIVKDLNGFDLV---VHNCMINANIQWGNLEEAQRLFDGMPER-N-EVSWTALISGFMKHGRVEESMWYFE 142 (712)
Q Consensus 68 ~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~l~~~~~~~g~~~~a~~~~~ 142 (712)
+.|++..+..+...+..-... .|..+...+ .....++...++++-+.. - ...-..-+..+.+.+++......+.
T Consensus 18 ~~~~~~~~~~l~~~l~~~pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~ 96 (618)
T 1qsa_A 18 DNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDL-MNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSP 96 (618)
T ss_dssp HTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTG-GGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCC
T ss_pred HCCCHHHHHHHHHhhcCCCcHHHHHHHHHHhCc-ccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhcc
Confidence 345565565555554322222 222222111 122455666666655542 1 1223445566677888888888666
Q ss_pred hCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHH
Q 005136 143 RNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVC 222 (712)
Q Consensus 143 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 222 (712)
. ++.+...-.....+....|+..+|......+-..|.. .+..+..++..+...|.... ...+
T Consensus 97 ~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~lt~----------------~~~~ 158 (618)
T 1qsa_A 97 E-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQDP----------------LAYL 158 (618)
T ss_dssp S-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCSCH----------------HHHH
T ss_pred C-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCCCCH----------------HHHH
Confidence 6 4445555556667777888887787777777665432 33344455554443332211 1122
Q ss_pred HHHHHHHHccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCce---eHHHHHHHHHhcCChhH
Q 005136 223 NSLITLSLKMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEV---SWSVMIARYNQSGYPEE 299 (712)
Q Consensus 223 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~ 299 (712)
.-+......|+...|..+...+..........++....+ ...+........ ++.. .+...+.-+.+ .+++.
T Consensus 159 -~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~~-~~~~~~~~~~~~~~rlar-~d~~~ 232 (618)
T 1qsa_A 159 -ERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTTG-ATDFTRQMAAVAFASVAR-QDAEN 232 (618)
T ss_dssp -HHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHSC-CCHHHHHHHHHHHHHHHH-HCHHH
T ss_pred -HHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhccC-CChhhHHHHHHHHHHHHh-cCHHH
Confidence 223444556777777777665522111112222222222 222233332221 1111 11122233333 37788
Q ss_pred HHHHHHHHHhCCCCCCHHHHH----HHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHH
Q 005136 300 AFRLFRQMTRYSFKPNTSCFS----IVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFD 375 (712)
Q Consensus 300 a~~~~~~m~~~~~~p~~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 375 (712)
|...+....... ..+..... .+.......+...++...+....... .+.....-.+....+.|+++.|...|.
T Consensus 233 A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~ 309 (618)
T 1qsa_A 233 ARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLA 309 (618)
T ss_dssp HHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888876433 22332222 22223333442445555555544332 333333344455567799999999998
Q ss_pred hhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHH
Q 005136 376 SIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDLVFAVFNEMLLSGEIP---NKS 452 (712)
Q Consensus 376 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p---~~~ 452 (712)
.|...........--+.+++...|+.++|..+|..+.++. +|..++.+ .+.|..-.. . ...+.+ ...
T Consensus 310 ~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~--~fYg~lAa-~~Lg~~~~~-~------~~~~~~~~~~~~ 379 (618)
T 1qsa_A 310 RLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQR--GFYPMVAA-QRIGEEYEL-K------IDKAPQNVDSAL 379 (618)
T ss_dssp HSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SHHHHHHH-HHTTCCCCC-C------CCCCCSCCCCHH
T ss_pred HccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCC--ChHHHHHH-HHcCCCCCC-C------CCCCChhHHhhh
Confidence 8876443333334455667778899999988888887652 33333221 111211000 0 000000 000
Q ss_pred ---HHHHHHHHHhccCchHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCChHHHHHHhccCCCCC------cchHHHH
Q 005136 453 ---TFSSVLCASASVASLEKGKDLHGKIIKLGFPYDVFLGTALTDTYAKSGDIESSRRVFDRMPDKN------EISWTVM 523 (712)
Q Consensus 453 ---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~l 523 (712)
.-..-+..+...|....|...+..+.+. .+......+.......|..+.+..........+ +..|..+
T Consensus 380 ~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~~y~~~ 456 (618)
T 1qsa_A 380 TQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAYNDL 456 (618)
T ss_dssp HHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCCTTHHH
T ss_pred ccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCCcchHHH
Confidence 0112233455667777777777776653 222333345555566677776665554433222 1234444
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 005136 524 VRGLAESGYAKESINLFEEMEKTSITPNE 552 (712)
Q Consensus 524 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~ 552 (712)
+....+.-.++..+-.---..++++.|+.
T Consensus 457 i~~~a~~~gv~~~ll~Ai~~~ES~f~p~a 485 (618)
T 1qsa_A 457 FKRYTSGKEIPQSYAMAIARQESAWNPKV 485 (618)
T ss_dssp HHHHHTTSSSCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCCCCCCC
Confidence 54444444444433332233444555543
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.61 E-value=0.21 Score=53.09 Aligned_cols=54 Identities=11% Similarity=-0.028 Sum_probs=49.6
Q ss_pred HHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHH
Q 005136 627 LSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLM 680 (712)
Q Consensus 627 ~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 680 (712)
+..|...|+++.|..+.+++....|.+...|..|+.+|...|+|+.|+-.+..+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 334678999999999999999999999999999999999999999999988865
No 243
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=93.17 E-value=5.7 Score=37.34 Aligned_cols=145 Identities=12% Similarity=0.026 Sum_probs=87.7
Q ss_pred HHHHhcCCh---HHHHHHHhhCCCCChhHHHHHHHHHHccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 005136 95 NANIQWGNL---EEAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKL 171 (712)
Q Consensus 95 ~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 171 (712)
......|++ -+|.+.++ ++..-|.+++++++|.+++.. -...+.+.|....|.++
T Consensus 20 ~~~I~~G~y~~~YEAHQ~~R-----------Ti~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL 77 (336)
T 3lpz_A 20 QRRIAEGQPEEQYEAAQETR-----------LVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDL 77 (336)
T ss_dssp HHHHHHCCHHHHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHH
T ss_pred HHHHhCCCCccccHHHHHHH-----------HHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHH
Confidence 344566777 67766554 566668888899998887544 33445667777666655
Q ss_pred H----HHHHHcCCCCCHhhHHHHHHHHhcccchH-HHHHHH----HHHHHhC--CCCCccHHHHHHHHHHccCChHHHHH
Q 005136 172 F----LKLLESGVKPNEVTFSSICKACAEINDFR-LGLSVF----GLIFKAG--FEKHVSVCNSLITLSLKMGEVDLARS 240 (712)
Q Consensus 172 ~----~~m~~~g~~p~~~~~~~l~~~~~~~~~~~-~a~~~~----~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~ 240 (712)
. +.+.+.++++|..+...|+..+......+ .=.+++ .+-.+.| ..-++.....+...|.+.+++.+|..
T Consensus 78 ~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~ 157 (336)
T 3lpz_A 78 AVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEK 157 (336)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 4 55666788899888888888777654311 112222 2333333 23355666777777777788877777
Q ss_pred HHhhcCCCCcchHHHHHHHHH
Q 005136 241 VFDRMEKRDVVSWTVILDVFI 261 (712)
Q Consensus 241 ~~~~~~~~~~~~~~~ll~~~~ 261 (712)
.|-.-..+.+..+..++.-+.
T Consensus 158 H~ilg~~~s~~~~a~mL~ew~ 178 (336)
T 3lpz_A 158 HLVLGTKESPEVLARMEYEWY 178 (336)
T ss_dssp HHTTSCTTHHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHH
Confidence 764222222345544443333
No 244
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.14 E-value=5.6 Score=37.14 Aligned_cols=181 Identities=12% Similarity=0.067 Sum_probs=105.5
Q ss_pred HHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCChhHHHHH---
Q 005136 95 NANIQWGNLEEAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKL--- 171 (712)
Q Consensus 95 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~--- 171 (712)
......|++-+|.+.++ ++..-|.+++++++|.+++.. -...+.+.|....|.++
T Consensus 21 ~~~I~~G~yYEAhQ~~R-----------tl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~l 78 (312)
T 2wpv_A 21 ENKIKAGDYYEAHQTLR-----------TIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFY 78 (312)
T ss_dssp HHHHHHTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhhccChHHHHHHHH-----------HHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHH
Confidence 34456677777776654 567778888899998887654 23445667887776665
Q ss_pred -HHHHHHcCCCCCHhhHHHHHHHHhcccc-----hHHHHHHHHHHHHhCC--CCCccHHHHHHHHHHccCChHHHHHHHh
Q 005136 172 -FLKLLESGVKPNEVTFSSICKACAEIND-----FRLGLSVFGLIFKAGF--EKHVSVCNSLITLSLKMGEVDLARSVFD 243 (712)
Q Consensus 172 -~~~m~~~g~~p~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~ 243 (712)
.+...+.+++++......++..+..... .+-..+...+-.+.|- .-++.....+...|.+.|++.+|...|-
T Consensus 79 lvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 79 LLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 5555667888998888888887766331 1222233333333332 2356677788888888888888888775
Q ss_pred hcCCCCcchHHHHHHHHHhc---CCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHH
Q 005136 244 RMEKRDVVSWTVILDVFIEM---GDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMT 308 (712)
Q Consensus 244 ~~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 308 (712)
.-...+...+..++.-+... |...++--... -.+-.|.-.++...|..+|+...
T Consensus 159 ~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~-----------RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 159 LGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFS-----------RLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH-----------HHHHHHHHTTBHHHHHHHHHHHH
T ss_pred hCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHH-----------HHHHHHHHhcCHHHHHHHHHHHH
Confidence 22222344444444444333 33333221111 11223444566666666666543
No 245
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.96 E-value=5.9 Score=36.97 Aligned_cols=123 Identities=11% Similarity=0.079 Sum_probs=66.8
Q ss_pred ccCChHHHHHHHhhcCCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHH----HHH
Q 005136 231 KMGEVDLARSVFDRMEKRDVVSWTVILDVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRL----FRQ 306 (712)
Q Consensus 231 ~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~ 306 (712)
..|++=+|.+.++ ++..-|.+.+++++|++++.. -...+.+.|+...|-++ ++.
T Consensus 25 ~~G~yYEAhQ~~R-----------tl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev 82 (312)
T 2wpv_A 25 KAGDYYEAHQTLR-----------TIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEV 82 (312)
T ss_dssp HHTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccChHHHHHHHH-----------HHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHH
Confidence 3455555555544 455555556666666655432 23344556666555543 455
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCChh-hHHHHHHHHH----HcCC--CCcHHHHHHHHHHHHhcCChHHHHHHHH
Q 005136 307 MTRYSFKPNTSCFSIVLSALASLKALR-SGMHVHAHVL----KIGI--EKDVFISNALIDLYSKCGETKDGRLVFD 375 (712)
Q Consensus 307 m~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~----~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 375 (712)
..+.+++++......++..+.....-+ .-.++++.++ +.|- .-++.....+...|.+.|++.+|+..|-
T Consensus 83 ~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 83 YDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 556678888877777777765532111 1122233332 2221 2355666666777777777777666654
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.35 E-value=0.54 Score=38.71 Aligned_cols=30 Identities=7% Similarity=0.018 Sum_probs=20.7
Q ss_pred chHHHHHHHHHhhhcCChHHHHHHHHhCCC
Q 005136 587 NGRHYTCVVDMLSRSGRLSEAEDFINSMPF 616 (712)
Q Consensus 587 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 616 (712)
+.+.-..++.+|.+.|++++|+.+++.++.
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 344555577777777777777777777754
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.22 E-value=10 Score=37.88 Aligned_cols=34 Identities=3% Similarity=0.090 Sum_probs=23.3
Q ss_pred CCchhhHHHHHHHHHhc--CChHHHHHHhccCCCCC
Q 005136 483 PYDVFLGTALTDTYAKS--GDIESSRRVFDRMPDKN 516 (712)
Q Consensus 483 ~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~ 516 (712)
-++...+..++.+|... .+++.+.+.|.....++
T Consensus 290 ~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~ 325 (445)
T 4b4t_P 290 LKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNED 325 (445)
T ss_dssp CHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTC
T ss_pred ccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhccc
Confidence 35667777888888654 46777888887766443
No 248
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.90 E-value=0.54 Score=36.96 Aligned_cols=67 Identities=13% Similarity=0.110 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHhhcCC---HHHHHHHHHHHhccCCC-CCchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 617 EPDSNAWASLLSGCKTYKN---EQIAERAVKNLWKLAEE-HPAGYVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 617 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
.|+..+-..+.+++.++.+ ..+++.+++.+++..|. ..+.++.|+..+.+.|++++|+++.+.+++.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3455555555555444332 23455555555554442 3455555555555555555555555555553
No 249
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.76 E-value=1.8 Score=34.54 Aligned_cols=69 Identities=13% Similarity=0.093 Sum_probs=53.6
Q ss_pred CCCHHHHHHHHHHHhhcCC---HHHHHHHHHHHhccCCC-CCchHHHHHHHHHhcCCchhHHHHHHHHHhCCC
Q 005136 617 EPDSNAWASLLSGCKTYKN---EQIAERAVKNLWKLAEE-HPAGYVLLSNIYASAGRWIDAMNVRKLMTEKGL 685 (712)
Q Consensus 617 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~ 685 (712)
.|+..+-..+.+++.++.+ ..+++.+++.++...|+ ..+.++.|+..+++.|++++|+++.+.+++..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 5777887778888776664 45778888888887774 567888888889999999999988888887544
No 250
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=91.73 E-value=4 Score=32.15 Aligned_cols=60 Identities=15% Similarity=0.039 Sum_probs=38.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCC
Q 005136 422 IISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGF 482 (712)
Q Consensus 422 l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 482 (712)
.++.....|.-+.-.+++..+.. +.+|++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 34455555555555667666543 3466777777777777777777777777777766654
No 251
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.29 E-value=0.39 Score=47.29 Aligned_cols=66 Identities=11% Similarity=0.022 Sum_probs=46.4
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh-----CCCccCC
Q 005136 624 ASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE-----KGLRKSG 689 (712)
Q Consensus 624 ~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~-----~~~~~~~ 689 (712)
..++..+...|+++++...++.++..+|-+-..+..|+.+|.+.|+..+|++.|++..+ -|++|.+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 33445566677777777777777777777777777777777777877777777776543 3665554
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.73 E-value=0.94 Score=37.31 Aligned_cols=25 Identities=16% Similarity=0.028 Sum_probs=15.8
Q ss_pred chHHHHHHHHHhcCCchhHHHHHHH
Q 005136 655 AGYVLLSNIYASAGRWIDAMNVRKL 679 (712)
Q Consensus 655 ~~~~~l~~~~~~~g~~~eA~~~~~~ 679 (712)
++-+.++.+|.+.|++++|+.+++.
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 4556666666666666666666554
No 253
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.77 E-value=13 Score=34.88 Aligned_cols=167 Identities=11% Similarity=0.092 Sum_probs=95.4
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHH----HHHHHHcCCCCCHHHHHHHHHHhccc
Q 005136 490 TALTDTYAKSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINL----FEEMEKTSITPNELTILSVLFACSHS 565 (712)
Q Consensus 490 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~~~~~~~~p~~~~~~~l~~~~~~~ 565 (712)
.++..-|.+++++++|.+++-. -...+.+.|+...|..+ ++-+.+.+++++......++..+...
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 3444456667777777766433 22344555655444333 34555567777777766666666544
Q ss_pred CcHH-HHHHHHHhcc---hhcCCCC--chHHHHHHHHHhhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHH
Q 005136 566 GLVD-KGLKYFNSME---PIYNIKP--NGRHYTCVVDMLSRSGRLSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIA 639 (712)
Q Consensus 566 g~~~-~a~~~~~~~~---~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 639 (712)
..-+ .=..+.+++. .+.|-.| ++.....++..|.+.+++.+|...|- ....++...+..++..+...+...++
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~~e~ 186 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDESHTA 186 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCGGGH
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCCccH
Confidence 3211 1122222221 1223223 77888889999999999999998884 34344456776666555444432111
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 640 ERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 640 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
- .+....+--|.-.|+...|..+++...+
T Consensus 187 d--------------lfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 187 P--------------LYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp H--------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred H--------------HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 1 1222333446778889999887776654
No 254
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.60 E-value=16 Score=36.41 Aligned_cols=91 Identities=11% Similarity=0.013 Sum_probs=51.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHhccCchHHHHHHHHHHHHc----CCCCc--hh
Q 005136 419 WSAIISGYLEHKQFDLVFAVFNEMLLS--GEIPN---KSTFSSVLCASASVASLEKGKDLHGKIIKL----GFPYD--VF 487 (712)
Q Consensus 419 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~ 487 (712)
...|...|...|++.+|..++..+... |..+. ...+...++.|...+++.+|..++.++... ..+|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 355777788888888888888887642 21111 234455566677777777777777665421 11111 12
Q ss_pred hHHHHHHHHHhcCChHHHHHHh
Q 005136 488 LGTALTDTYAKSGDIESSRRVF 509 (712)
Q Consensus 488 ~~~~l~~~~~~~g~~~~A~~~~ 509 (712)
.+...+..+...+++.+|.+.|
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y 241 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYL 241 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHH
Confidence 3344444445555555555443
No 255
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=89.52 E-value=3.9 Score=29.89 Aligned_cols=53 Identities=23% Similarity=0.314 Sum_probs=34.6
Q ss_pred HHHHHccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 005136 125 ISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESG 179 (712)
Q Consensus 125 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 179 (712)
+..+..+|+|++|..+.+....||...|-.+-. .+.|--+++..-+.++-.+|
T Consensus 46 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 46 ISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 344566777777777777777777777766544 45666666666666665554
No 256
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=89.20 E-value=4.3 Score=29.74 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=28.7
Q ss_pred HHHHccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 005136 126 SGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLKLLESG 179 (712)
Q Consensus 126 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 179 (712)
..+..+|+|++|..+.+....||...|-.+-. .+.|--+++..-+.++-.+|
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 33455666666666666666666666655543 34455555555555554443
No 257
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.15 E-value=7.4 Score=37.85 Aligned_cols=163 Identities=7% Similarity=-0.056 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHc-CCCC---chhhHHHHHHHHHhcC-ChHHHHHHhccCCC---CCcchH---
Q 005136 452 STFSSVLCASASVASLEKGKDLHGKIIKL-GFPY---DVFLGTALTDTYAKSG-DIESSRRVFDRMPD---KNEISW--- 520 (712)
Q Consensus 452 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~--- 520 (712)
.....+...|.+.|+.++..+++...... +..+ ...+...+++.+.... ..+.-.++..+..+ .+-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777888887777777665431 1111 2334556666665432 22333333332221 111222
Q ss_pred ---HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHhcccCcHHHHHHHHHhcchhc-CCCCchHH-
Q 005136 521 ---TVMVRGLAESGYAKESINLFEEMEKTSITPNE-----LTILSVLFACSHSGLVDKGLKYFNSMEPIY-NIKPNGRH- 590 (712)
Q Consensus 521 ---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~p~~~~- 590 (712)
..++..|...|++.+|.+++.++.+.=-+.|. ..+..-+..|...+++.++...+....... .+.+++..
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 24667777778888887777777663112121 123444556667777777777776664221 11122222
Q ss_pred ---HHHHHHHhh-hcCChHHHHHHHHhC
Q 005136 591 ---YTCVVDMLS-RSGRLSEAEDFINSM 614 (712)
Q Consensus 591 ---~~~l~~~~~-~~g~~~~A~~~~~~~ 614 (712)
..+-+..+. ..++|.+|...|-+.
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 122234455 677777777666553
No 258
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.80 E-value=4.9 Score=42.87 Aligned_cols=122 Identities=12% Similarity=0.120 Sum_probs=75.8
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCHhhH--HHHHHHHhccc-chHHHHHHHHHHHHh------CCCCCc----
Q 005136 154 AAICGFVQNGF-SFEALKLFLKLLESGVKPNEVTF--SSICKACAEIN-DFRLGLSVFGLIFKA------GFEKHV---- 219 (712)
Q Consensus 154 ~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~--~~l~~~~~~~~-~~~~a~~~~~~~~~~------~~~~~~---- 219 (712)
.++..+...|+ .+.|+++|+++.+.. |....+ ..++..+...+ +--+|.+++.+.++. ..++..
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 33444444666 578999999998863 333332 22333333333 233455555554432 112111
Q ss_pred -------cHHHHHHHHHHccCChHHHHHHHhhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHHhhCC
Q 005136 220 -------SVCNSLITLSLKMGEVDLARSVFDRMEK--R-DVVSWTVILDVFIEMGDLGEARRIFDEMP 277 (712)
Q Consensus 220 -------~~~~~li~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 277 (712)
.....-+..+...|+++.|+++-++... | +-.+|..|..+|...|+++.|+-.++.++
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1233335566678999999999888775 4 45688889999999999999988888886
No 259
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.07 E-value=4.8 Score=29.69 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHc
Q 005136 299 EAFRLFRQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKI 345 (712)
Q Consensus 299 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 345 (712)
+..+-++.+....+.|++......+.+|.+.+++..|.++++-++..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44455555555556666666666666666666666666666655544
No 260
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.00 E-value=21 Score=40.86 Aligned_cols=164 Identities=9% Similarity=0.096 Sum_probs=89.6
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHccCChHHHHHHhhhCCCC---CcccHHHHHHHHHhcCChhHH
Q 005136 92 CMINANIQWGNLEEAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERNPFQ---NVISWTAAICGFVQNGFSFEA 168 (712)
Q Consensus 92 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A 168 (712)
.++..+...|.++-+..+.....+ ++.....+..+|...|++++|...|.+.... +.... ..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~----------~~---- 881 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQF----------AV---- 881 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSC----------SS----
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhh----------hh----
Confidence 455556666666666655544433 3444455666677777777777777653210 00000 00
Q ss_pred HHHHHHHHHcC--CCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHccCChHHHHHHH
Q 005136 169 LKLFLKLLESG--VKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHV----SVCNSLITLSLKMGEVDLARSVF 242 (712)
Q Consensus 169 ~~~~~~m~~~g--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~ 242 (712)
..-+..+.... ...-..-|..++..+-+.+.++.+.++-...++...+.+. ..|..+.+.+...|++++|...+
T Consensus 882 ~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 882 LREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp HHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred hcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 00011111110 1112345666777777777777777777766665322221 25677778888888888887777
Q ss_pred hhcCCC--CcchHHHHHHHHHhcCCHHHHH
Q 005136 243 DRMEKR--DVVSWTVILDVFIEMGDLGEAR 270 (712)
Q Consensus 243 ~~~~~~--~~~~~~~ll~~~~~~~~~~~a~ 270 (712)
-.+... .......|+..++..|..+.-.
T Consensus 962 ~~~pd~~~r~~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 962 MVLSTTPLKKSCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp HHHHHSSSCHHHHHHHHHHHHHHCCHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHhCCChhhhh
Confidence 666532 2335566677777766655443
No 261
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.88 E-value=1.6 Score=39.31 Aligned_cols=50 Identities=12% Similarity=0.271 Sum_probs=27.0
Q ss_pred hcccCcHHHHHHHHHhcchhcCCCC-chHHHHHHHHHhhhcCChHHHHHHHHhC
Q 005136 562 CSHSGLVDKGLKYFNSMEPIYNIKP-NGRHYTCVVDMLSRSGRLSEAEDFINSM 614 (712)
Q Consensus 562 ~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 614 (712)
..+.|+++.++.....-.+. .| |...-..|+..++-.|+|++|.+-++..
T Consensus 7 ll~~g~L~~al~~~~~~VR~---~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34455555555555444422 44 5555555666666666666666555554
No 262
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=85.85 E-value=15 Score=35.76 Aligned_cols=26 Identities=8% Similarity=0.027 Sum_probs=18.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHhccCC
Q 005136 488 LGTALTDTYAKSGDIESSRRVFDRMP 513 (712)
Q Consensus 488 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 513 (712)
....|.+.|.+.|+.++..+++....
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45567777777777777777776654
No 263
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.04 E-value=5.4 Score=29.45 Aligned_cols=62 Identities=18% Similarity=0.329 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHH
Q 005136 165 SFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLIT 227 (712)
Q Consensus 165 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 227 (712)
.-++.+-++.+....+.|++....+.+++|.+.+++..|.++++-++..- .....+|..++.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 44566777778778889999999999999999999999999998876553 333556776654
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=84.26 E-value=7.4 Score=35.09 Aligned_cols=124 Identities=13% Similarity=0.112 Sum_probs=75.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCC
Q 005136 525 RGLAESGYAKESINLFEEMEKTSITP-NELTILSVLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGR 603 (712)
Q Consensus 525 ~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 603 (712)
....+.|+.++|++.+..-++. .| |...-..++..+|-.|++++|.+-++.+.+ +.|+...-..+.+-+.++..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~aE~ 79 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQ 79 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHHHH
Confidence 3456778888998888887774 45 455566778888899999999988887763 35654333222222222211
Q ss_pred hHHHHHHHHhC--C--CCCCHHHHHHHHHH--HhhcCCHHHHHHHHHHHhccCCCCCc
Q 005136 604 LSEAEDFINSM--P--FEPDSNAWASLLSG--CKTYKNEQIAERAVKNLWKLAEEHPA 655 (712)
Q Consensus 604 ~~~A~~~~~~~--~--~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~p~~~~ 655 (712)
..+ ++|..- + ......-...++.+ ....|+.++|.++-.++.+.-|..+.
T Consensus 80 ~R~--~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 80 ARK--DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp HHH--HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHH--HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 111 223221 1 11122223344444 45689999999999999988887654
No 265
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=81.02 E-value=27 Score=30.25 Aligned_cols=111 Identities=12% Similarity=0.034 Sum_probs=53.8
Q ss_pred CcchhhhHHHHHHhcCCChhHhHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHccCC
Q 005136 54 KERYLTTRLLIMYLGSRKSLEANEIVKDLNGFDLVVHNCMINANIQWGNLEEAQRLFDGMPERNEVSWTALISGFMKHGR 133 (712)
Q Consensus 54 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 133 (712)
++..+....+..+.+.|+......+.+.+..++..+-...+.++.+.|+.+....+.+-+.+++..+-...+.++.+.|+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD 110 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 45555555555555555544444444444445555555555555555554444444444444555555555555555555
Q ss_pred hHHHHHHhhhCCCCCcccHHHHHHHHHhcCC
Q 005136 134 VEESMWYFERNPFQNVISWTAAICGFVQNGF 164 (712)
Q Consensus 134 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~ 164 (712)
.+....+.+-+..++...-...+.++.+.|.
T Consensus 111 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 111 ERAVEPLIKALKDEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 4433333333444444444444444444444
No 266
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=80.63 E-value=27 Score=30.16 Aligned_cols=179 Identities=14% Similarity=0.048 Sum_probs=97.1
Q ss_pred HHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHccCChHHHHHHhhhCCCCCcccHHHH
Q 005136 76 NEIVKDLNGFDLVVHNCMINANIQWGNLEEAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERNPFQNVISWTAA 155 (712)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l 155 (712)
..+.+.+..++..+-...+.++.+.|..+....+.+.+..++...-...+.++.+.|+.+....+.+.+..++...-...
T Consensus 22 ~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a 101 (211)
T 3ltm_A 22 EMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSA 101 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHH
Confidence 33344444555555555666666666655455555555566666666666677777765555555555666666666666
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCCh
Q 005136 156 ICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEV 235 (712)
Q Consensus 156 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 235 (712)
+.++.+.|+.+ +...+..+.. .++...-...+.++...++.+. ...+..+.+ .++..+-...+.++.+.+..
T Consensus 102 ~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~ 173 (211)
T 3ltm_A 102 AVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDERA-VEPLIKALK---DEDGWVRQSAADALGEIGGE 173 (211)
T ss_dssp HHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCSH
T ss_pred HHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHc---CCCHHHHHHHHHHHHHhCch
Confidence 66776666643 3344444442 3555555566666666665433 333333322 34556666666666666664
Q ss_pred HHHHHHHhhcCCCCcchHHHHHHHHHh
Q 005136 236 DLARSVFDRMEKRDVVSWTVILDVFIE 262 (712)
Q Consensus 236 ~~a~~~~~~~~~~~~~~~~~ll~~~~~ 262 (712)
+....+.+.+..++...-...+.++.+
T Consensus 174 ~~~~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 174 RVRAAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 333333333333554444444444443
No 267
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=80.53 E-value=37 Score=38.87 Aligned_cols=21 Identities=14% Similarity=0.132 Sum_probs=10.9
Q ss_pred HHHHhcccCcHHHHHHHHHhc
Q 005136 558 VLFACSHSGLVDKGLKYFNSM 578 (712)
Q Consensus 558 l~~~~~~~g~~~~a~~~~~~~ 578 (712)
+..++...|++++|.++|++.
T Consensus 848 ~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 848 KALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHhcCCHHHHHHHHHHH
Confidence 344455555555555555554
No 268
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=80.13 E-value=27 Score=29.86 Aligned_cols=79 Identities=13% Similarity=0.101 Sum_probs=29.4
Q ss_pred cchhhhHHHHHHhcCCChhHhHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHccCC
Q 005136 55 ERYLTTRLLIMYLGSRKSLEANEIVKDLNGFDLVVHNCMINANIQWGNLEEAQRLFDGMPERNEVSWTALISGFMKHGR 133 (712)
Q Consensus 55 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~ 133 (712)
+..+....+..+...|+......+.+.+..++..+-...+.++...|+.+....+...+..++...-...+.++.+.|+
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD 105 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 3334444444444444333333333333333333333333344444433333333333333333333333333333333
No 269
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=79.63 E-value=10 Score=29.75 Aligned_cols=58 Identities=9% Similarity=0.072 Sum_probs=28.0
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHhhhcCCCCceeeHHHHH
Q 005136 335 GMHVHAHVLKIGIEKDVFISNALIDLYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMI 392 (712)
Q Consensus 335 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 392 (712)
..+-++.+....+.|++.+..+.+++|-+.+++..|.++|+.++.+.-+....|..++
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 3333444444444555555555555555555555555555555444333333344433
No 270
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=79.02 E-value=17 Score=26.75 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=32.3
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHccCChHHHHHHhhhCC
Q 005136 94 INANIQWGNLEEAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERNP 145 (712)
Q Consensus 94 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 145 (712)
+..+..+|++++|..+.+...-||...|..|.. .+.|--+++...+.++.
T Consensus 47 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 47 LSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 445667777777777777777777777666554 35566666666654443
No 271
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=78.93 E-value=17 Score=26.70 Aligned_cols=52 Identities=15% Similarity=0.098 Sum_probs=31.1
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 005136 258 DVFIEMGDLGEARRIFDEMPERNEVSWSVMIARYNQSGYPEEAFRLFRQMTRYS 311 (712)
Q Consensus 258 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 311 (712)
..+.+.|++++|..+.+.+.-||...|-.|.. .+.|..+++..-+..+..+|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 34555666666666666666666666655543 35666666666666665544
No 272
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=78.73 E-value=37 Score=31.19 Aligned_cols=141 Identities=12% Similarity=0.035 Sum_probs=68.8
Q ss_pred HHHhhccchhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCChhHhHHHHhhcCCC---CcchHHHHHHHHHhcCChH
Q 005136 28 LKDITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVKDLNGF---DLVVHNCMINANIQWGNLE 104 (712)
Q Consensus 28 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~ 104 (712)
+...+..|+.+ +.+.+++.|..++..--.+.+...+..|+.+-+..+++.-..+ +..-++.|. ..+..|+.+
T Consensus 35 L~~A~~~g~~~----~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~-~A~~~g~~~ 109 (285)
T 3kea_A 35 SYYAIADNNVR----LVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALY-YAVDSGNMQ 109 (285)
T ss_dssp HHHHHHTTCHH----HHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHH
T ss_pred HHHHHHcCCHH----HHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHH-HHHHcCCHH
Confidence 44444556543 3444455565555443344555566677777666666654332 222233333 234556666
Q ss_pred HHHHHHhhCCC---CChhHHHHHHHHHHccCChHHHHHHhhhCCCC-CcccHHHHHHHHHhcCChhHHHHHHH
Q 005136 105 EAQRLFDGMPE---RNEVSWTALISGFMKHGRVEESMWYFERNPFQ-NVISWTAAICGFVQNGFSFEALKLFL 173 (712)
Q Consensus 105 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 173 (712)
-+.-+++.-.. .+...+.+.+...+..|+.+-+..+++..... +...-.+.+...+..|+.+-+.-+++
T Consensus 110 ~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 110 TVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLD 182 (285)
T ss_dssp HHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHH
Confidence 55555554222 22222233444455666666666666654432 22133334444455566554444443
No 273
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=77.53 E-value=12 Score=36.46 Aligned_cols=73 Identities=11% Similarity=-0.008 Sum_probs=54.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHH-----hCCCCCccHHHHH
Q 005136 152 WTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFK-----AGFEKHVSVCNSL 225 (712)
Q Consensus 152 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 225 (712)
...++..+...|++.+|+..+..+.... +.+...+..++.++.+.|+..+|++.|+.+.+ .|+.|...+-...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3456667778888888888888887652 34667888888888888888888888887654 4788877664433
No 274
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=76.80 E-value=13 Score=29.19 Aligned_cols=61 Identities=18% Similarity=0.329 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHH
Q 005136 166 FEALKLFLKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLIT 227 (712)
Q Consensus 166 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 227 (712)
-+..+-++.+...++.|++......+++|.+.+|+..|..+++-++..- .+...+|..++.
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 3466677777777889999999999999999999999999998877653 344566776654
No 275
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=76.73 E-value=26 Score=30.96 Aligned_cols=117 Identities=13% Similarity=-0.009 Sum_probs=63.1
Q ss_pred HHHHhhccchhhhhhhHHHHHHHhCCCCcchhh--hHHHHHHhcCCChhHhHHHHhhcCCCCc---chHHHHHHHHHhcC
Q 005136 27 LLKDITSQNLVIQGRALHGHLIKTGIHKERYLT--TRLLIMYLGSRKSLEANEIVKDLNGFDL---VVHNCMINANIQWG 101 (712)
Q Consensus 27 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g 101 (712)
.+...+..|+.+....+.+.+.+.|..++.... .+.+...+..|+.+-...+++.-..++. .-++. +...+..|
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~ 90 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA-AHLACEHR 90 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH-HHHHHHcC
Confidence 345566778888888887777777766554321 2345555667777777666665433322 22222 33334566
Q ss_pred ChHHHHHHHhhCCC-------CChhHHHHHHHHHHccCChHHHHHHhhhCC
Q 005136 102 NLEEAQRLFDGMPE-------RNEVSWTALISGFMKHGRVEESMWYFERNP 145 (712)
Q Consensus 102 ~~~~A~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 145 (712)
+.+-+..+++.... .+....+ .+...++.|+.+-+..+++...
T Consensus 91 ~~~~~~~Ll~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g~ 140 (241)
T 1k1a_A 91 SPTCLRALLDSAAPGTLDLEARNYDGLT-ALHVAVNTECQETVQLLLERGA 140 (241)
T ss_dssp CHHHHHHHHHHSCTTSCCTTCCCTTSCC-HHHHHHHHTCHHHHHHHHHTTC
T ss_pred CHHHHHHHHHcCCCccccccccCcCCCc-HHHHHHHcCCHHHHHHHHHcCC
Confidence 76666666665431 1112222 2333345566666666665543
No 276
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=73.72 E-value=42 Score=28.65 Aligned_cols=83 Identities=11% Similarity=-0.008 Sum_probs=36.2
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHHHHHHHHHccCChHHHHHHhhhCCCCCcccHHHHHHHHHhc
Q 005136 83 NGFDLVVHNCMINANIQWGNLEEAQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQN 162 (712)
Q Consensus 83 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 162 (712)
..++..+-...+.++.+.|.-+....+.+.+..++...-...+.++.+.|..+....+.+.+..++...-...+.++.+.
T Consensus 24 ~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 103 (201)
T 3ltj_A 24 QDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQI 103 (201)
T ss_dssp TCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 33444444444444444444333333333344444444444444444444444333333444444444444444444444
Q ss_pred CCh
Q 005136 163 GFS 165 (712)
Q Consensus 163 g~~ 165 (712)
|+.
T Consensus 104 ~~~ 106 (201)
T 3ltj_A 104 GDE 106 (201)
T ss_dssp CCG
T ss_pred CcH
Confidence 443
No 277
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=73.46 E-value=54 Score=29.85 Aligned_cols=20 Identities=10% Similarity=0.036 Sum_probs=9.4
Q ss_pred CCCccHHHHHHHHHHccCCh
Q 005136 216 EKHVSVCNSLITLSLKMGEV 235 (712)
Q Consensus 216 ~~~~~~~~~li~~~~~~~~~ 235 (712)
.++..+-...+.++...|+.
T Consensus 139 d~~~~vR~~a~~aL~~~~~~ 158 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVINDK 158 (280)
T ss_dssp CSCHHHHHHHHHHHHTC---
T ss_pred CCCHHHHHHHHHHHHhcCCH
Confidence 34555555555556555543
No 278
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.90 E-value=8.6 Score=38.24 Aligned_cols=97 Identities=8% Similarity=-0.064 Sum_probs=58.5
Q ss_pred HHHHHHHHhcccCcHHHHHHHHHhcchhcC-CCCchHHHHHHHHHhhhcCChHHHHHHHHhC----CCCCCHHHH--HHH
Q 005136 554 TILSVLFACSHSGLVDKGLKYFNSMEPIYN-IKPNGRHYTCVVDMLSRSGRLSEAEDFINSM----PFEPDSNAW--ASL 626 (712)
Q Consensus 554 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~--~~l 626 (712)
+...+...|.+.|+++.|.+.|.++..... ...-...+..+++.+...++|..+...++++ ...++.... ...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 456677777788888888888887764321 1123556667777777778888877777765 122232221 111
Q ss_pred HHH--HhhcCCHHHHHHHHHHHhccC
Q 005136 627 LSG--CKTYKNEQIAERAVKNLWKLA 650 (712)
Q Consensus 627 ~~~--~~~~g~~~~a~~~~~~~~~~~ 650 (712)
..+ +...+++..|-..|-.+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccC
Confidence 111 456677777777776665443
No 279
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=72.89 E-value=47 Score=30.13 Aligned_cols=114 Identities=14% Similarity=0.084 Sum_probs=54.8
Q ss_pred HHHHHHHccCChHHHHHHhhhCCCCCcc---cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHh---hHHHHHHHHhc
Q 005136 123 ALISGFMKHGRVEESMWYFERNPFQNVI---SWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEV---TFSSICKACAE 196 (712)
Q Consensus 123 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~l~~~~~~ 196 (712)
+.+...++.|+++.+..+++.....+.. .-.+.+...+..|+.+ +++.+.+.|..|+.. -.+. +...+.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~ 81 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATP-FLLAAI 81 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCH-HHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCH-HHHHHH
Confidence 4555667888888888888765543322 1123344445566654 444455556554432 1122 222333
Q ss_pred ccchHHHHHHHHHHHHhCCCCCccHH--HHHHHHHHccCChHHHHHHHhhc
Q 005136 197 INDFRLGLSVFGLIFKAGFEKHVSVC--NSLITLSLKMGEVDLARSVFDRM 245 (712)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~~ 245 (712)
.|+.+ +++.+.+.|..++.... ...+...+..|+.+-+..+++.-
T Consensus 82 ~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 128 (285)
T 1wdy_A 82 AGSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 128 (285)
T ss_dssp HTCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT
T ss_pred cCCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhC
Confidence 44443 34444455544432110 11223334556666555555543
No 280
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=71.51 E-value=59 Score=29.42 Aligned_cols=206 Identities=13% Similarity=0.057 Sum_probs=99.8
Q ss_pred HHHHHhhccchhhhhhhHHHHHHHhCCCCcch---hhhHHHHHHhcCCChhHhHHHHhhcCCCC---cchHHHHHHHHHh
Q 005136 26 CLLKDITSQNLVIQGRALHGHLIKTGIHKERY---LTTRLLIMYLGSRKSLEANEIVKDLNGFD---LVVHNCMINANIQ 99 (712)
Q Consensus 26 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~ 99 (712)
+.+...+..|+++ +.+.+++.|..++.. .-.+.+...+..|+.+-...+++.-..++ ..-.+. +...+.
T Consensus 7 ~~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~ 81 (285)
T 1wdy_A 7 HLLIKAVQNEDVD----LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATP-FLLAAI 81 (285)
T ss_dssp HHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH-HHHHHH
T ss_pred hHHHHHHHcCCHH----HHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCH-HHHHHH
Confidence 3455566677754 444556667655533 11345666667788877777777653332 222233 333345
Q ss_pred cCChHHHHHHHhhCCCC---ChhHHHHHHHHHHccCChHHHHHHhhhCCCCCcc-------------cHHHHHHHHHhcC
Q 005136 100 WGNLEEAQRLFDGMPER---NEVSWTALISGFMKHGRVEESMWYFERNPFQNVI-------------SWTAAICGFVQNG 163 (712)
Q Consensus 100 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-------------~~~~li~~~~~~g 163 (712)
.|+.+-+.-+++.-... +...++ .+...+..|+.+-+..+++....++.. .. ..+...+..|
T Consensus 82 ~~~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~-t~L~~A~~~~ 159 (285)
T 1wdy_A 82 AGSVKLLKLFLSKGADVNECDFYGFT-AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGA-TALMDAAEKG 159 (285)
T ss_dssp HTCHHHHHHHHHTTCCTTCBCTTCCB-HHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCC-CHHHHHHHHT
T ss_pred cCCHHHHHHHHHcCCCCCccCcccCC-HHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCC-cHHHHHHHcC
Confidence 67776666666553332 222222 233445667777777777664433221 11 2233334455
Q ss_pred ChhHHHHHHHHHHHc-CCCCCH---hhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccH--HHHHHHHHHccCChHH
Q 005136 164 FSFEALKLFLKLLES-GVKPNE---VTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSV--CNSLITLSLKMGEVDL 237 (712)
Q Consensus 164 ~~~~A~~~~~~m~~~-g~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~ 237 (712)
+.+-+. .+.+. |..++. .-.+.+..+ ...++......+++.+.+.|..++... -...+...+..|+.+-
T Consensus 160 ~~~~v~----~Ll~~~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 234 (285)
T 1wdy_A 160 HVEVLK----ILLDEMGADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGL 234 (285)
T ss_dssp CHHHHH----HHHHTSCCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHH
T ss_pred CHHHHH----HHHHhcCCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHH
Confidence 554333 33333 433322 112222222 334444445566666666665544321 1122333344555555
Q ss_pred HHHHHh
Q 005136 238 ARSVFD 243 (712)
Q Consensus 238 a~~~~~ 243 (712)
+..+++
T Consensus 235 v~~Ll~ 240 (285)
T 1wdy_A 235 VQRLLE 240 (285)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555554
No 281
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.07 E-value=12 Score=37.09 Aligned_cols=96 Identities=9% Similarity=-0.036 Sum_probs=66.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHhccCCC------CCcchHHHHHHHHHHcCChHHHHHHHHHHHHc---CCCCCHHHH--
Q 005136 487 FLGTALTDTYAKSGDIESSRRVFDRMPD------KNEISWTVMVRGLAESGYAKESINLFEEMEKT---SITPNELTI-- 555 (712)
Q Consensus 487 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~p~~~~~-- 555 (712)
.....+...|.+.|+++.|.+.+.++.. .-...+-..+..+...+++..+...+.++... +-.|+...-
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3567788899999999999999988762 12335667788888899999999988887543 222222221
Q ss_pred HHHHHHhcccCcHHHHHHHHHhcchhc
Q 005136 556 LSVLFACSHSGLVDKGLKYFNSMEPIY 582 (712)
Q Consensus 556 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 582 (712)
..-...+...+++..|-..|-++...+
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 112223456788999999888887443
No 282
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=68.11 E-value=16 Score=32.93 Aligned_cols=55 Identities=16% Similarity=0.019 Sum_probs=37.7
Q ss_pred HHHHhhccchhhhhhhHHHHHHHhCCCCcchh-------hhHHHHHHh--cCCChhHhHHHHhh
Q 005136 27 LLKDITSQNLVIQGRALHGHLIKTGIHKERYL-------TTRLLIMYL--GSRKSLEANEIVKD 81 (712)
Q Consensus 27 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~~~~~~a~~~~~~ 81 (712)
.+...+..|+.+....+++.+++.|..++... .+.|..+.. +.|..+-+..+++.
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 44556788999999999999999887777443 233433332 56777777766665
No 283
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=64.39 E-value=54 Score=28.68 Aligned_cols=109 Identities=10% Similarity=0.030 Sum_probs=53.6
Q ss_pred hhccchhhhhhhHHHHHHHhCCCCcchh--hhHHHHHHhcCCChhHhHHHHhhcCCCCcch---HHHHHHHHHhcCChHH
Q 005136 31 ITSQNLVIQGRALHGHLIKTGIHKERYL--TTRLLIMYLGSRKSLEANEIVKDLNGFDLVV---HNCMINANIQWGNLEE 105 (712)
Q Consensus 31 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~ 105 (712)
.+..|++ ++.+.+++.|..++... -...+...+..|+.+-+..+++....++... -...+...+..|+.+-
T Consensus 16 A~~~g~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~ 91 (240)
T 3eu9_A 16 ATQYGIY----ERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSM 91 (240)
T ss_dssp HHHTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHH
T ss_pred HHHcCCh----HHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHH
Confidence 4556664 34445556665544322 1235556667777777777776653322111 1223333445566665
Q ss_pred HHHHHhhCCCC---ChhHHHHHHHHHHccCChHHHHHHhhhC
Q 005136 106 AQRLFDGMPER---NEVSWTALISGFMKHGRVEESMWYFERN 144 (712)
Q Consensus 106 A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 144 (712)
+.-+++.-..+ +....+ .+...+..|+.+-+..+++..
T Consensus 92 v~~Ll~~g~~~~~~~~~g~t-~l~~A~~~~~~~~~~~Ll~~~ 132 (240)
T 3eu9_A 92 VVQLMKYGADPSLIDGEGCS-CIHLAAQFGHTSIVAYLIAKG 132 (240)
T ss_dssp HHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHcCCCCcccCCCCCC-HHHHHHHcCHHHHHHHHHhcC
Confidence 55555543222 222222 233345556666666666543
No 284
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=63.82 E-value=1.2e+02 Score=29.90 Aligned_cols=52 Identities=12% Similarity=0.036 Sum_probs=24.6
Q ss_pred HHHHhhccchhhhhhhHHHHHHHhCCCCcchh--hhHHHHHHhcCCChhHhHHHHhhc
Q 005136 27 LLKDITSQNLVIQGRALHGHLIKTGIHKERYL--TTRLLIMYLGSRKSLEANEIVKDL 82 (712)
Q Consensus 27 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~ 82 (712)
.+...+..|+++ +.+.+++.|..++... ..+.+...+..|+.+-++.+++.-
T Consensus 17 ~L~~Aa~~g~~~----~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g 70 (437)
T 1n11_A 17 PLHVASFMGHLP----IVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNK 70 (437)
T ss_dssp HHHHHHHHTCHH----HHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHCCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 444455556643 3344455565554322 123344444555555555555543
No 285
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=61.12 E-value=60 Score=27.74 Aligned_cols=50 Identities=12% Similarity=-0.083 Sum_probs=32.4
Q ss_pred cCChHHHHHHHHhC---CC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC
Q 005136 601 SGRLSEAEDFINSM---PF-EPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLA 650 (712)
Q Consensus 601 ~g~~~~A~~~~~~~---~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 650 (712)
.+...++.++|.-| ++ .--+..|...+..+...|++++|.++++..++..
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34355666666655 33 2335666666666777888888888888877654
No 286
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=59.79 E-value=55 Score=27.66 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=26.4
Q ss_pred HHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhH
Q 005136 626 LLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDA 673 (712)
Q Consensus 626 l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA 673 (712)
.+..|.+.|.+++|++++++.....|.+...-..|..+-.+.+.+-.-
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~~ 170 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSF 170 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcHH
Confidence 344477777777777777777776666655555555554444443333
No 287
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=57.89 E-value=1.1e+02 Score=29.07 Aligned_cols=72 Identities=10% Similarity=0.032 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--chHHHHHHHHHHHHcCCCCchhhHHH
Q 005136 419 WSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVA--SLEKGKDLHGKIIKLGFPYDVFLGTA 491 (712)
Q Consensus 419 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ 491 (712)
...++.-|...++.++|...++++......+ ......+..++-+.+ ..+....++..+.+.|+-+...+...
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~G 293 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRG 293 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 3556666677777777777777764221111 223334444444432 23445566666666555444444333
No 288
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=55.53 E-value=31 Score=30.90 Aligned_cols=56 Identities=11% Similarity=-0.156 Sum_probs=37.4
Q ss_pred HHHHHhhccchhhhhhhHHHHHHHhCCCCcc-------hhhhHHHHHHhcC---CChhHhHHHHhhc
Q 005136 26 CLLKDITSQNLVIQGRALHGHLIKTGIHKER-------YLTTRLLIMYLGS---RKSLEANEIVKDL 82 (712)
Q Consensus 26 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~---~~~~~a~~~~~~~ 82 (712)
+.+...+..|+.+....+.+.+++.|..++. .-.+.| ...+.. |+.+-+..+++.-
T Consensus 4 t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L-~~A~~~~~~g~~~~v~~Ll~~g 69 (256)
T 2etb_A 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCL-MKAVLNLQDGVNACIMPLLQID 69 (256)
T ss_dssp HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHH-HHHHHTCBTTBCTTHHHHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHH-HHHHHccccchHHHHHHHHhcC
Confidence 3455677889999999999999988876654 223333 333444 7777777666653
No 289
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=55.35 E-value=99 Score=26.43 Aligned_cols=53 Identities=8% Similarity=0.147 Sum_probs=36.4
Q ss_pred cCChhhHHHHHHHHHHcCCCCc-HHHHHHHHHHHHhcCChHHHHHHHHhhhcCC
Q 005136 329 LKALRSGMHVHAHVLKIGIEKD-VFISNALIDLYSKCGETKDGRLVFDSIVEKD 381 (712)
Q Consensus 329 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 381 (712)
.++.....++|..|...|+... ...|......+-..|++.+|..+|+.-.+.+
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3445677777777777766443 4556677777777788888877777776665
No 290
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=54.95 E-value=86 Score=28.63 Aligned_cols=51 Identities=4% Similarity=-0.062 Sum_probs=22.9
Q ss_pred HHHHHhcCCChhHhHHHHhhcCCCCcchHHHHHHHHHhcCChHHHHHHHhh
Q 005136 62 LLIMYLGSRKSLEANEIVKDLNGFDLVVHNCMINANIQWGNLEEAQRLFDG 112 (712)
Q Consensus 62 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 112 (712)
.+...+..|+.+-+..+++.-..++..--...+...+..|+.+-+.-+++.
T Consensus 34 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 84 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFS 84 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 344445566666666666553222221112223333445555555555443
No 291
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=54.90 E-value=1.6e+02 Score=28.82 Aligned_cols=204 Identities=11% Similarity=0.072 Sum_probs=92.6
Q ss_pred HHHHHhcCCChhHhHHHHhhcCCCCcc--hHHHHHHHHHhcCChHHHHHHHhhCCCC---ChhHHHHHHHHHHccCChHH
Q 005136 62 LLIMYLGSRKSLEANEIVKDLNGFDLV--VHNCMINANIQWGNLEEAQRLFDGMPER---NEVSWTALISGFMKHGRVEE 136 (712)
Q Consensus 62 l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~ 136 (712)
.+...+..|+.+-.+.+++.-..++.. .....+...+..|+.+-+.-+++.-... +.... +.+...++.|+.+-
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~g~~~~ 95 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TPLHCAARIGHTNM 95 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSC-CHHHHHHHHTCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHCCCHHH
Confidence 344445667777666666654333221 1122333344567766666666543322 22222 23344456677777
Q ss_pred HHHHhhhCCCCC---cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HhhHHHHHHHHhcccchHHHHHHHHHH
Q 005136 137 SMWYFERNPFQN---VISWTAAICGFVQNGFSFEALKLFLKLLESGVKPN---EVTFSSICKACAEINDFRLGLSVFGLI 210 (712)
Q Consensus 137 a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~ 210 (712)
+.-+++....++ ...++ .+...++.|+.+-+..+++ .|..++ ..-.+ .+...+..|+.+ +++.+
T Consensus 96 v~~Ll~~ga~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t-~L~~A~~~g~~~----~v~~L 165 (437)
T 1n11_A 96 VKLLLENNANPNLATTAGHT-PLHIAAREGHVETVLALLE----KEASQACMTKKGFT-PLHVAAKYGKVR----VAELL 165 (437)
T ss_dssp HHHHHHHTCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSCC-HHHHHHHTTCHH----HHHHH
T ss_pred HHHHHhCCCCCCCCCCCCCc-HHHHHHHcCCHHHHHHHHh----CCCCCcCCCCCCCC-HHHHHHHcCCHH----HHHHH
Confidence 766666544332 22222 2333345566554444443 332221 11111 222333445544 33344
Q ss_pred HHhCCCCCccH--HHHHHHHHHccCChHHHHHHHhhcCCCCcch--HHHHHHHHHhcCCHHHHHHHHhhC
Q 005136 211 FKAGFEKHVSV--CNSLITLSLKMGEVDLARSVFDRMEKRDVVS--WTVILDVFIEMGDLGEARRIFDEM 276 (712)
Q Consensus 211 ~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~ 276 (712)
++.|..++... -...+...+..|+.+-+.-+++.-..++... -.+.+...+..|+.+-+..+++.-
T Consensus 166 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 235 (437)
T 1n11_A 166 LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG 235 (437)
T ss_dssp HHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 44554333211 1122333445666666666665443332221 112344455667776666666543
No 292
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=52.47 E-value=1.1e+02 Score=26.05 Aligned_cols=84 Identities=12% Similarity=0.057 Sum_probs=53.0
Q ss_pred cHHHHHHHH---HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccc-----hHHHHHHHHHHHHhCCCCCccHH
Q 005136 151 SWTAAICGF---VQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEIND-----FRLGLSVFGLIFKAGFEKHVSVC 222 (712)
Q Consensus 151 ~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~ 222 (712)
.+.-+|+++ .+..+++.|+-.+-+|++.| .|....-..++.+.-.-|. ...|...++.....|.+.-....
T Consensus 13 ~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~L 91 (204)
T 2r9g_A 13 AHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPL 91 (204)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHH
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 344556665 55789999999999999999 7666555556655555453 44566666777777865544444
Q ss_pred HHHHHHHHccCCh
Q 005136 223 NSLITLSLKMGEV 235 (712)
Q Consensus 223 ~~li~~~~~~~~~ 235 (712)
...+..++.+-+.
T Consensus 92 aqaviyLA~aPKS 104 (204)
T 2r9g_A 92 ADVVVDLCLSPKS 104 (204)
T ss_dssp HHHHHHHHHSCCC
T ss_pred HHHHHHHHcCCcc
Confidence 4444444444333
No 293
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=49.99 E-value=83 Score=27.86 Aligned_cols=87 Identities=13% Similarity=0.025 Sum_probs=44.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc--CCCC----CHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHH
Q 005136 155 AICGFVQNGFSFEALKLFLKLLES--GVKP----NEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITL 228 (712)
Q Consensus 155 li~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 228 (712)
-++.+....++++|.+++++..+. +.++ ........+..-...+.-..+..+.+.+ .. .+........+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 345566666777776666655432 2221 1112222233323333333344444444 22 3445555666677
Q ss_pred HHccCChHHHHHHHhh
Q 005136 229 SLKMGEVDLARSVFDR 244 (712)
Q Consensus 229 ~~~~~~~~~a~~~~~~ 244 (712)
+.+.|+.+.|.++|-+
T Consensus 101 L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHH
Confidence 7778888888877763
No 294
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=49.83 E-value=1.1e+02 Score=28.40 Aligned_cols=59 Identities=19% Similarity=0.130 Sum_probs=42.4
Q ss_pred HHhCCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 611 INSMPFEPD--SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 611 ~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
|...+.+|. ..++...+..+.+.+++..|..+.++++++.|... ..++|.+++..-.+.
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSM 256 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTS
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcC
Confidence 344456665 44567777778999999999999999999998622 245577776665543
No 295
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=48.86 E-value=1.1e+02 Score=26.44 Aligned_cols=77 Identities=5% Similarity=-0.079 Sum_probs=36.2
Q ss_pred HhcCCChhHhHHHHhhcCCC---CcchHHHHHHHHHhcCChHHHHHHHhhCCCCCh---hHHHHHHHHHHccCChHHHHH
Q 005136 66 YLGSRKSLEANEIVKDLNGF---DLVVHNCMINANIQWGNLEEAQRLFDGMPERNE---VSWTALISGFMKHGRVEESMW 139 (712)
Q Consensus 66 ~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~ 139 (712)
.++.|+.+..+.+++.-..+ +..-. ..+...+..|+.+-+.-+++.-...+. ..-.+.+...+..|+.+-+..
T Consensus 16 A~~~g~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~ 94 (240)
T 3eu9_A 16 ATQYGIYERCRELVEAGYDVRQPDKENV-TLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQ 94 (240)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHH
T ss_pred HHHcCChHHHHHHHHcCCCcCCCCCCCC-CHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHH
Confidence 44566666666666654322 22222 233344556666666655554433211 101122333445566665555
Q ss_pred Hhhh
Q 005136 140 YFER 143 (712)
Q Consensus 140 ~~~~ 143 (712)
+++.
T Consensus 95 Ll~~ 98 (240)
T 3eu9_A 95 LMKY 98 (240)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 5554
No 296
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=47.90 E-value=1.1e+02 Score=34.09 Aligned_cols=85 Identities=6% Similarity=-0.190 Sum_probs=46.8
Q ss_pred HHHHhcccCcHHHHHHHHHhcchhcCCCCchHHHHHHHHHhhhcCChHHHHHHHHhCC--CC-C----------------
Q 005136 558 VLFACSHSGLVDKGLKYFNSMEPIYNIKPNGRHYTCVVDMLSRSGRLSEAEDFINSMP--FE-P---------------- 618 (712)
Q Consensus 558 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-p---------------- 618 (712)
++..|...|.++-|.++..-+ +.++..-..++.+|...|++++|...|+++. +. +
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~------~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC------CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 445556666666555433222 2233333456677777777777777777661 11 0
Q ss_pred ------CHHHHHHHHHHHhhcCCHHHHHHHHHHHhc
Q 005136 619 ------DSNAWASLLSGCKTYKNEQIAERAVKNLWK 648 (712)
Q Consensus 619 ------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 648 (712)
....|..++..+.+.+.++.+.++.+.+++
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 012344455555666666666666666665
No 297
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=47.26 E-value=2.7e+02 Score=29.17 Aligned_cols=340 Identities=11% Similarity=0.010 Sum_probs=0.0
Q ss_pred HHHHHHHccCChHHHHHHHhhc---CCCCcchHHHHHHHHHhcCCHHHHHHHHhhCCC---------CCceeHHHHHHHH
Q 005136 224 SLITLSLKMGEVDLARSVFDRM---EKRDVVSWTVILDVFIEMGDLGEARRIFDEMPE---------RNEVSWSVMIARY 291 (712)
Q Consensus 224 ~li~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~l~~~~ 291 (712)
.+|-.|.++|++++|.++.++. .+.-...+...+..++...+-.--.++-.++.. ++...|...+...
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~s~~~~L~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~I 236 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYASSKDHGLPVEYSTKLHTEYNQHIKSSLDGDPYRLAVYKL 236 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q ss_pred HhcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccC-----------ChhhHHHHHHHHHHcCCCCcHHHHHHHHH
Q 005136 292 NQSGYPEEAFRLFRQMTRY-SFKPNTSCFSIVLSALASLK-----------ALRSGMHVHAHVLKIGIEKDVFISNALID 359 (712)
Q Consensus 292 ~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 359 (712)
.-..+.. -... .+..+..-|..+=-.+.+.+ .+.+....+.+.-..-+.+ ....
T Consensus 237 ig~cD~~--------~~~~~~v~~siED~LWl~L~lvre~~~~~~~~~e~ytL~~LQ~~I~~yGe~~F~~------lYf~ 302 (661)
T 2qx5_A 237 IGRCDLS--------RKNIPAVTLSIEDWLWMHLMLIKEKDAENDPVYERYSLEDFQNIIISYGPSRFSN------YYLQ 302 (661)
T ss_dssp HHTCCGG--------GCCCGGGCCSHHHHHHHHHHTCCC----------CCCHHHHHHHHHHHCGGGGTT------CHHH
T ss_pred Hhccccc--------ccchHHHhccHHHHHHHHHHhccCCCcccccccccccHHHHHHHHHHhhhhhhhh------HHHH
Q ss_pred HHHhcCChHHHHHHHHhhhcCCCCceeeHHHHHHHHhccCChhhHHHHhhcCCCCCcccHHHHHHHHHhc---CChhHHH
Q 005136 360 LYSKCGETKDGRLVFDSIVEKDVAHVVSWNSMIGGYGLNGQMEEAKELFDNMPKRNDVSWSAIISGYLEH---KQFDLVF 436 (712)
Q Consensus 360 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~ 436 (712)
++.-+|+++.|...+.+. ...+...+...+.-+.-.+- ...++..-......-+..||..|.+. .++..|+
T Consensus 303 vLlLtgqFE~AI~~L~~~---~~vdAVH~AIaL~~~gLL~~---~~~lls~~~~~~~lN~arLI~~Yt~~F~~td~~~Al 376 (661)
T 2qx5_A 303 TLLLSGLYGLAIDYTYTF---SEMDAVHLAIGLASLKLFKI---DSSTRLTKKPKRDIRFANILANYTKSFRYSDPRVAV 376 (661)
T ss_dssp HHHHTTCHHHHHHHHHTT---CHHHHHHHHHHHHHTTC--------------------CHHHHHHHHHTTTTTTCHHHHH
T ss_pred HHHHHhhHHHHHHHHHhc---CchhHHHHHHHHHHcCCccC---CCcccccCCCcccccHHHHHHHHHHHhhcCCHHHHH
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCCch-------------------hhHHHHHHHHH
Q 005136 437 AVFNEMLLSGEIPNKSTFSSVLCASASVASLEKGKDLHGKIIKLGFPYDV-------------------FLGTALTDTYA 497 (712)
Q Consensus 437 ~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------------~~~~~l~~~~~ 497 (712)
+.|--+...+.+.....+...+.-+.-..+ +-..++..+...|..... .+......-+.
T Consensus 377 ~Y~~li~l~~g~~~~~~~~~~l~eLvletr--~f~~LLG~i~~dG~r~~G~i~~~~~li~l~d~~~~~~~i~~~aA~~ae 454 (661)
T 2qx5_A 377 EYLVLITLNEGPTDVELCHEALRELVLETK--EFTVLLGKIGRDGARIPGVIEERQPLLHVRDEKEFLHTITEQAARRAD 454 (661)
T ss_dssp HHHHGGGGSCCHHHHHHHHHHHHHHHHHHC--CHHHHHCEECTTSCEECCHHHHTCGGGTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCchHHHHHHHHHHHHHHhcc--cHHHHcCCcCCCCCcCcchHHHhhcccccccHHHHHHHHHHHHHHHHH
Q ss_pred hcCChHHHHHHhccCCCCCcchHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcccC-----------
Q 005136 498 KSGDIESSRRVFDRMPDKNEISWTVMVRGLAESGYAKESINLFEEMEKTSITPNELTILSVLFACSHSG----------- 566 (712)
Q Consensus 498 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----------- 566 (712)
..|++++|..+ |.-.|+++.|++++.+... .+.....
T Consensus 455 ~~G~~~dAi~L------------------Y~La~~~d~vl~lln~~Ls--------------~~l~~~~~~~~~~~~~~~ 502 (661)
T 2qx5_A 455 EDGRIYDSILL------------------YQLAEEYDIVITLVNSLLS--------------DTLSASDLDQPLVGPDDN 502 (661)
T ss_dssp HTTCHHHHHHH------------------HHHTTCHHHHHHHHHHHHH--------------HHHHHSCTTSCSSCSSCC
T ss_pred HCCCHHHHHHH------------------HHHhcCHHHHHHHHHHHHH--------------HHhccccccccccccccc
Q ss_pred ----cHHHHHHHHHhcchhc-----CCCC-chHHHHHHHHH-----hhhcCChHHHHHHHHhCCCCC
Q 005136 567 ----LVDKGLKYFNSMEPIY-----NIKP-NGRHYTCVVDM-----LSRSGRLSEAEDFINSMPFEP 618 (712)
Q Consensus 567 ----~~~~a~~~~~~~~~~~-----~~~p-~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~p 618 (712)
-...|.++.+... .. .+.+ +..++..|.+. +.+.|++++|++.++++++-|
T Consensus 503 ~~~~l~~la~~i~~~y~-~~~~~~~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~llP 568 (661)
T 2qx5_A 503 SETNPVLLARRMASIYF-DNAGISRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMELLDLLP 568 (661)
T ss_dssp TTTCHHHHHHHHHHHHT-TCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTSCSC
T ss_pred ccccHHHHHHHHHHHHh-cCchhhhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
No 298
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.23 E-value=37 Score=34.17 Aligned_cols=67 Identities=12% Similarity=0.124 Sum_probs=46.3
Q ss_pred hHHHHHHHHHhhhcCChHHHHHHHHhCCCC----CCH--HHHHHH-HHHHhhcCCHHHHHHHHHHHhccCCCCC
Q 005136 588 GRHYTCVVDMLSRSGRLSEAEDFINSMPFE----PDS--NAWASL-LSGCKTYKNEQIAERAVKNLWKLAEEHP 654 (712)
Q Consensus 588 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----p~~--~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~p~~~ 654 (712)
...++.+++.|...+.++.|..++.+.... ++. ..|... ...+..++++.+|.+.+..++..-|.+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 556778888888888899999888887432 121 223222 2336678888888888888888777643
No 299
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=46.37 E-value=1.2e+02 Score=24.63 Aligned_cols=46 Identities=11% Similarity=0.074 Sum_probs=22.1
Q ss_pred HHHHHHHHhccC--CCCCchHHHHHHHHHhcCCchhHHHHHHHHHhCC
Q 005136 639 AERAVKNLWKLA--EEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEKG 684 (712)
Q Consensus 639 a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~ 684 (712)
+..+++.+.... -..+..|...+..+...|++.+|.++++.-++.+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 444444444332 2233445555555555555555555555544443
No 300
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=45.01 E-value=1.5e+02 Score=25.51 Aligned_cols=77 Identities=18% Similarity=0.224 Sum_probs=50.0
Q ss_pred CcccHHHHHHHH---HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccc-----hHHHHHHHHHHHHhCCCCCc
Q 005136 148 NVISWTAAICGF---VQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEIND-----FRLGLSVFGLIFKAGFEKHV 219 (712)
Q Consensus 148 ~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~ 219 (712)
+-..+.-+|+++ .+..+++.|+-.+-+|++.|-.|....-..++.+.-.-|. ...|...++.....|.+.-.
T Consensus 31 ~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~ 110 (213)
T 3ctd_A 31 NGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGL 110 (213)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTH
T ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHH
Confidence 334455566666 4578999999999999999987776666666666554443 44566666777777765444
Q ss_pred cHHHH
Q 005136 220 SVCNS 224 (712)
Q Consensus 220 ~~~~~ 224 (712)
.....
T Consensus 111 i~Laq 115 (213)
T 3ctd_A 111 FFLSQ 115 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
No 301
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=44.72 E-value=56 Score=32.94 Aligned_cols=50 Identities=14% Similarity=0.074 Sum_probs=37.9
Q ss_pred cCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHh
Q 005136 633 YKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTE 682 (712)
Q Consensus 633 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~ 682 (712)
...++.|..+|.++..+.|++...|+.||.+....|+.-+|.-++-+.+-
T Consensus 165 ~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 165 RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp TTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 44567788888888888888888888888888888877777776666544
No 302
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=42.51 E-value=1.2e+02 Score=28.25 Aligned_cols=63 Identities=17% Similarity=0.310 Sum_probs=30.9
Q ss_pred HHHHHHHhccCChhhHHHHhhcCCCCCcc---cHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCH
Q 005136 389 NSMIGGYGLNGQMEEAKELFDNMPKRNDV---SWSAIISGYLEHKQ--FDLVFAVFNEMLLSGEIPNK 451 (712)
Q Consensus 389 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~--~~~a~~~~~~~~~~g~~p~~ 451 (712)
..++.-|...|+.++|.+.++++..|.-. +...+..++-+.++ .+.+..++..+...|+-+..
T Consensus 170 ~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~ 237 (307)
T 2zu6_B 170 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVD 237 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 45556666667777777777766655211 12222222222222 23445566666555544433
No 303
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=42.23 E-value=1.4e+02 Score=24.48 Aligned_cols=49 Identities=6% Similarity=0.017 Sum_probs=27.5
Q ss_pred CChHHHHHHHHhCCCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccC
Q 005136 602 GRLSEAEDFINSMPFE-PDSNAWASLLSGCKTYKNEQIAERAVKNLWKLA 650 (712)
Q Consensus 602 g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 650 (712)
++..+....+..-++- --+..|...+..+...|++.+|.++++..++..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4444443333333332 235555666666667777777777777777654
No 304
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=41.61 E-value=53 Score=29.39 Aligned_cols=54 Identities=13% Similarity=-0.009 Sum_probs=29.6
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHhh-------HHHHHHHHh--cccchHHHHHHHHHH
Q 005136 157 CGFVQNGFSFEALKLFLKLLESGVKPNEVT-------FSSICKACA--EINDFRLGLSVFGLI 210 (712)
Q Consensus 157 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-------~~~l~~~~~--~~~~~~~a~~~~~~~ 210 (712)
...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++..
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 334566777777777776666665554322 233333332 456666665555544
No 305
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=41.10 E-value=2.4e+02 Score=26.80 Aligned_cols=70 Identities=14% Similarity=0.148 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC--ChhhHHHHHHHHHHcCCCCcHHHH
Q 005136 284 WSVMIARYNQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLK--ALRSGMHVHAHVLKIGIEKDVFIS 354 (712)
Q Consensus 284 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~ 354 (712)
.+.++.-|...++.++|.+.++++......+ ......+..++-+.+ ..+....++..+...|+-......
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~ 291 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 291 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 3456666666777777777777664311111 222333333444332 233455555555555544433333
No 306
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=40.06 E-value=59 Score=22.77 Aligned_cols=56 Identities=14% Similarity=0.131 Sum_probs=38.3
Q ss_pred CCCCchhhHHHHHHHhhccc-hhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCCh
Q 005136 16 SFNSYIETCLCLLKDITSQN-LVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKS 72 (712)
Q Consensus 16 ~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 72 (712)
|+....+- ..++..+...+ ..-.+.++++.+.+.++..+..|....+..+...|-.
T Consensus 12 g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 12 GLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp TCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred CCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 65555444 34555555554 5677888888888887777788888888877776643
No 307
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=39.71 E-value=1.3e+02 Score=25.54 Aligned_cols=63 Identities=17% Similarity=0.295 Sum_probs=40.4
Q ss_pred HHHHHHH---HhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcccc-----hHHHHHHHHHHHHhCC
Q 005136 153 TAAICGF---VQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEIND-----FRLGLSVFGLIFKAGF 215 (712)
Q Consensus 153 ~~li~~~---~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 215 (712)
..+|+++ .+..+++.|+-.+-+|++.|-.|....-..++.+.-.-|. ...|...++.....|.
T Consensus 8 Yd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 78 (201)
T 3bge_A 8 YDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGA 78 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCC
Confidence 3455555 4578999999999999999887766655555555544442 3344444555555553
No 308
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=38.80 E-value=85 Score=27.39 Aligned_cols=112 Identities=13% Similarity=0.142 Sum_probs=53.5
Q ss_pred HHHHhhccchhhhhhhHHHHHHHhCCCCcchhh--hHHHHHHhcCCChhHhHHHHhhcCCC---CcchHHHHHHHHHhcC
Q 005136 27 LLKDITSQNLVIQGRALHGHLIKTGIHKERYLT--TRLLIMYLGSRKSLEANEIVKDLNGF---DLVVHNCMINANIQWG 101 (712)
Q Consensus 27 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g 101 (712)
.+...+..|+.+ +.+.+++.|..++.... .+.+...+..|+.+-+..+++.-..+ +....+. +...+..|
T Consensus 14 ~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~ 88 (237)
T 3b7b_A 14 PLHAAAEAGHVD----ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTC-LHLAAKKG 88 (237)
T ss_dssp HHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCH-HHHHHHTT
T ss_pred HHHHHHHcCcHH----HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcH-HHHHHHcC
Confidence 344456666654 45555666765554221 23444555667777666666654322 2222222 23334456
Q ss_pred ChHHHHHHHhhCC-C---CChhHHHHHHHHHHccCChHHHHHHhhhC
Q 005136 102 NLEEAQRLFDGMP-E---RNEVSWTALISGFMKHGRVEESMWYFERN 144 (712)
Q Consensus 102 ~~~~A~~~~~~~~-~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 144 (712)
+.+-+.-+++.-. . .+....+ .+...++.|+.+-+..+++..
T Consensus 89 ~~~~~~~Ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g 134 (237)
T 3b7b_A 89 HYEVVQYLLSNGQMDVNCQDDGGWT-PMIWATEYKHVDLVKLLLSKG 134 (237)
T ss_dssp CHHHHHHHHTTTCCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHTT
T ss_pred CHHHHHHHHhCCCCCcccCCCCCCC-HHHHHHHcCCHHHHHHHHHCC
Confidence 6665555555431 1 1221112 223334556666555555543
No 309
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=38.31 E-value=1.9e+02 Score=24.67 Aligned_cols=49 Identities=8% Similarity=0.089 Sum_probs=36.2
Q ss_pred ccHHHHHHHHH---hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc
Q 005136 417 VSWSAIISGYL---EHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVAS 466 (712)
Q Consensus 417 ~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~ 466 (712)
.....+|.++. +..+++.|+-++-+|++.| .|....-..++.+...-|.
T Consensus 12 d~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 12 DAHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 34445566654 4578899999999999999 7777777777777766664
No 310
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=35.96 E-value=2.4e+02 Score=25.30 Aligned_cols=18 Identities=22% Similarity=0.100 Sum_probs=8.3
Q ss_pred CCHhhHHHHHHHHhcccc
Q 005136 182 PNEVTFSSICKACAEIND 199 (712)
Q Consensus 182 p~~~~~~~l~~~~~~~~~ 199 (712)
|+...-...+.++...++
T Consensus 140 ~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 140 KSTNVRRATAFAISVIND 157 (280)
T ss_dssp SCHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 454444455555555554
No 311
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.76 E-value=1.1e+02 Score=30.89 Aligned_cols=61 Identities=16% Similarity=0.216 Sum_probs=46.0
Q ss_pred HHHHHHHHHhcccCcHHHHHHHHHhcchhcCC-CCc---hHHHHHHHHHhhhcCChHHHHHHHHhC
Q 005136 553 LTILSVLFACSHSGLVDKGLKYFNSMEPIYNI-KPN---GRHYTCVVDMLSRSGRLSEAEDFINSM 614 (712)
Q Consensus 553 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~ 614 (712)
..++.+++.|...+.++.|..+..+.. -... .++ ...+..++..+.-.+++.+|.+.+...
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~-fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE-YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC-SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc-CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 568899999999999999999999886 1111 122 223345688888999999999988875
No 312
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=35.07 E-value=2.1e+02 Score=24.64 Aligned_cols=22 Identities=5% Similarity=0.013 Sum_probs=11.7
Q ss_pred HhcccchHHHHHHHHHHHHhCC
Q 005136 194 CAEINDFRLGLSVFGLIFKAGF 215 (712)
Q Consensus 194 ~~~~~~~~~a~~~~~~~~~~~~ 215 (712)
.+..|+.+.+..+++.+.+.|.
T Consensus 161 A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 161 LILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHcCChHHHHHHHHHHHhcCC
Confidence 3445555555555555555553
No 313
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=33.33 E-value=3.1e+02 Score=25.79 Aligned_cols=83 Identities=17% Similarity=0.092 Sum_probs=38.8
Q ss_pred HhcCChHHHHHHHhhCCCC---ChhHHHHHHHHHHccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 005136 98 IQWGNLEEAQRLFDGMPER---NEVSWTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKLFLK 174 (712)
Q Consensus 98 ~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 174 (712)
+..|+.+-+..+++.-... |....+ .+...+..|+.+-+..+++.....+...-...+...+..|+.+-+..+++.
T Consensus 28 a~~g~~~~v~~Ll~~g~~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 106 (364)
T 3ljn_A 28 ARKGQTDEVRRLIETGVSPTIQNRFGCT-ALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEG 106 (364)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTCCC-HHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCccccCCCCCc-HHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHh
Confidence 3456665555555542221 222222 233345556666666666654433332222233334556666655555555
Q ss_pred HHHcCCC
Q 005136 175 LLESGVK 181 (712)
Q Consensus 175 m~~~g~~ 181 (712)
....|..
T Consensus 107 ~~~~~~~ 113 (364)
T 3ljn_A 107 AKERGQM 113 (364)
T ss_dssp HHHHTCC
T ss_pred ccccCCC
Confidence 4443443
No 314
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=32.99 E-value=2.3e+02 Score=24.09 Aligned_cols=61 Identities=10% Similarity=0.184 Sum_probs=40.2
Q ss_pred HHHHH---HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC-----hhhHHHHHHHHHHcCC
Q 005136 287 MIARY---NQSGYPEEAFRLFRQMTRYSFKPNTSCFSIVLSALASLKA-----LRSGMHVHAHVLKIGI 347 (712)
Q Consensus 287 l~~~~---~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 347 (712)
+|+++ .+-.+++.|+-.+-+|++.|..|.-..-..++.+.-..|. +..|...++.....|.
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 78 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGA 78 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCC
Confidence 44444 4568899999999999999988877766666666655443 3334444444444453
No 315
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=32.36 E-value=2e+02 Score=23.26 Aligned_cols=47 Identities=13% Similarity=0.070 Sum_probs=25.9
Q ss_pred HHHHHHHHHHcCCCCc-HHHHHHHHHHHHhcCChHHHHHHHHhhhcCC
Q 005136 335 GMHVHAHVLKIGIEKD-VFISNALIDLYSKCGETKDGRLVFDSIVEKD 381 (712)
Q Consensus 335 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 381 (712)
..++|..|...|+... ...|......+-..|++.+|..+|..-.+.+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4555555555554332 3445555555666666666666666555544
No 316
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=32.11 E-value=2.4e+02 Score=24.18 Aligned_cols=19 Identities=11% Similarity=-0.106 Sum_probs=9.1
Q ss_pred HHHHhcCCChhHhHHHHhh
Q 005136 63 LIMYLGSRKSLEANEIVKD 81 (712)
Q Consensus 63 ~~~~~~~~~~~~a~~~~~~ 81 (712)
+...+..|+.+-+..+++.
T Consensus 41 L~~A~~~g~~~~v~~Ll~~ 59 (232)
T 2rfa_A 41 LHIAALYDNLEAAMVLMEA 59 (232)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 3333445555555555544
No 317
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=31.38 E-value=95 Score=25.06 Aligned_cols=56 Identities=14% Similarity=0.095 Sum_probs=38.8
Q ss_pred CCCCchhhHHHHHHHhhccc-hhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCCh
Q 005136 16 SFNSYIETCLCLLKDITSQN-LVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKS 72 (712)
Q Consensus 16 ~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 72 (712)
|+.+..+=. .++..+...+ ....|.++++.+.+.++..+..|...-+..+...|-.
T Consensus 12 g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 12 GLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp TCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred CCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 554443322 3444555555 6778889998888888888888888888888877744
No 318
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=31.08 E-value=1.4e+02 Score=26.86 Aligned_cols=56 Identities=14% Similarity=-0.011 Sum_probs=34.8
Q ss_pred HHHHHhhccchhhhhhhHHHHHHHhCCCC-------cchhhhHHHHHHh--cCCChhHhHHHHhh
Q 005136 26 CLLKDITSQNLVIQGRALHGHLIKTGIHK-------ERYLTTRLLIMYL--GSRKSLEANEIVKD 81 (712)
Q Consensus 26 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~l~~~~~--~~~~~~~a~~~~~~ 81 (712)
+.+...+..|+.+....+++...+.+... +..-.+.|..+.. +.|+.+-+..+++.
T Consensus 15 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ 79 (273)
T 2pnn_A 15 RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV 79 (273)
T ss_dssp HHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh
Confidence 44555677899999888988887776543 2233344444443 34766666666654
No 319
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=30.82 E-value=2.6e+02 Score=24.05 Aligned_cols=68 Identities=18% Similarity=0.204 Sum_probs=44.2
Q ss_pred CcccHHHHHHHHH---hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCch-----HHHHHHHHHHHHcCC
Q 005136 415 NDVSWSAIISGYL---EHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVASL-----EKGKDLHGKIIKLGF 482 (712)
Q Consensus 415 ~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~ 482 (712)
+......+|.++. +..+++.|+-++-+|++.|-.|....-..++.+...-|.- ..|...++.....|.
T Consensus 31 ~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 31 NGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3444555666664 4578899999999999999888887777777776665542 234444444444453
No 320
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=30.57 E-value=80 Score=24.72 Aligned_cols=26 Identities=12% Similarity=0.284 Sum_probs=13.7
Q ss_pred HHHHHHHHccCChHHHHHHhhhCCCC
Q 005136 122 TALISGFMKHGRVEESMWYFERNPFQ 147 (712)
Q Consensus 122 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 147 (712)
..++.-|...|+.++|.+.++++..|
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p 36 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVP 36 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCC
Confidence 34455555555555555555555433
No 321
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=30.19 E-value=3.5e+02 Score=25.42 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=16.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHhhh
Q 005136 355 NALIDLYSKCGETKDGRLVFDSIV 378 (712)
Q Consensus 355 ~~l~~~~~~~g~~~~A~~~~~~~~ 378 (712)
..++.-|...|+.++|...++++.
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC
Confidence 445666777777777777777664
No 322
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=30.00 E-value=57 Score=25.62 Aligned_cols=46 Identities=15% Similarity=0.062 Sum_probs=36.9
Q ss_pred HHHHhhccchhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCCh
Q 005136 27 LLKDITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKS 72 (712)
Q Consensus 27 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 72 (712)
++..+...+....|.++++.+.+.++..+..|....+..+...|-.
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 4555556667788999999999888888888888888888888843
No 323
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=29.93 E-value=1.1e+02 Score=27.11 Aligned_cols=29 Identities=14% Similarity=0.084 Sum_probs=20.0
Q ss_pred CCchHHHHHHHHHhhhcCChHHHHHHHHh
Q 005136 585 KPNGRHYTCVVDMLSRSGRLSEAEDFINS 613 (712)
Q Consensus 585 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 613 (712)
.++.......+..+.+.|+-++|.++|-+
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFLQ 116 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 34555566666777788888888877654
No 324
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=29.68 E-value=2.3e+02 Score=23.22 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHcCCCCC-HhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCcc
Q 005136 166 FEALKLFLKLLESGVKPN-EVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVS 220 (712)
Q Consensus 166 ~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 220 (712)
+.+.++|..|..+|+--. +..|......+-..|++..|..+++.-++.+-.|...
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 346667777777765433 3345556666667778888888888777776666543
No 325
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=29.19 E-value=1.4e+02 Score=23.85 Aligned_cols=60 Identities=12% Similarity=0.033 Sum_probs=28.7
Q ss_pred HHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCC
Q 005136 174 KLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGE 234 (712)
Q Consensus 174 ~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 234 (712)
.+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|-
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 34455555444322 3333333344445566666666555544444444444455555554
No 326
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=28.86 E-value=57 Score=25.97 Aligned_cols=47 Identities=13% Similarity=0.044 Sum_probs=36.5
Q ss_pred HHHHHhhccchhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCCCh
Q 005136 26 CLLKDITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSRKS 72 (712)
Q Consensus 26 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 72 (712)
.++..+...+....|.++++.+.+.++..+..|...-+..+...|-.
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 35566666667778899999888888888888888888888877743
No 327
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=28.84 E-value=3.8e+02 Score=29.77 Aligned_cols=49 Identities=10% Similarity=0.032 Sum_probs=33.4
Q ss_pred hhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHccC
Q 005136 185 VTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHV----SVCNSLITLSLKMG 233 (712)
Q Consensus 185 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~ 233 (712)
..|..++..+-+.+-++.+.++.+..++.--+.|. ..++.+.++.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 46778888888888888888888888775323333 35666666665443
No 328
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=28.80 E-value=1.1e+02 Score=22.39 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=18.9
Q ss_pred ChhhHHHHhhcCCCCCcccHHHHHHHHHhcCChhH
Q 005136 400 QMEEAKELFDNMPKRNDVSWSAIISGYLEHKQFDL 434 (712)
Q Consensus 400 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 434 (712)
..++|.++++.++++.+.+|..++.++...|+...
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~L 86 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDML 86 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHH
Confidence 45555555555555555555555555554444433
No 329
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=28.50 E-value=67 Score=23.13 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=14.2
Q ss_pred hHHHHHHHHHhcCCchhHHHHHHH
Q 005136 656 GYVLLSNIYASAGRWIDAMNVRKL 679 (712)
Q Consensus 656 ~~~~l~~~~~~~g~~~eA~~~~~~ 679 (712)
.+...+..+.+.|+|++|++..++
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~k 40 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRK 40 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHH
Confidence 444555666666666666665554
No 330
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=28.27 E-value=2.9e+02 Score=23.78 Aligned_cols=17 Identities=6% Similarity=-0.091 Sum_probs=7.8
Q ss_pred HHhcCCChhHhHHHHhh
Q 005136 65 MYLGSRKSLEANEIVKD 81 (712)
Q Consensus 65 ~~~~~~~~~~a~~~~~~ 81 (712)
..+..|+.+-...+++.
T Consensus 17 ~A~~~g~~~~v~~Ll~~ 33 (237)
T 3b7b_A 17 AAAEAGHVDICHMLVQA 33 (237)
T ss_dssp HHHHHTCHHHHHHHHHT
T ss_pred HHHHcCcHHHHHHHHHc
Confidence 33444555444444443
No 331
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=28.21 E-value=1.9e+02 Score=22.87 Aligned_cols=50 Identities=20% Similarity=0.145 Sum_probs=23.1
Q ss_pred HHHhhccchhhhhhhHHHHHHHhCCCC---cchhhhHHHHHHhcCCChhHhHHHHhhc
Q 005136 28 LKDITSQNLVIQGRALHGHLIKTGIHK---ERYLTTRLLIMYLGSRKSLEANEIVKDL 82 (712)
Q Consensus 28 l~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 82 (712)
+...+..|+.+....+++. .+..+ +..-. +.+.. +..|+.+-+..+++.-
T Consensus 6 L~~A~~~g~~~~v~~ll~~---~~~~~~~~~~~g~-t~L~~-~~~~~~~~v~~Ll~~g 58 (156)
T 1bd8_A 6 LSGAAARGDVQEVRRLLHR---ELVHPDALNRFGK-TALQV-MMFGSTAIALELLKQG 58 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHT---TCCCTTCCCTTSC-CHHHH-SCTTCHHHHHHHHHTT
T ss_pred HHHHHHhCCHHHHHHHHHh---hCcCccccCCCCC-cHHHH-HHcCCHHHHHHHHHCC
Confidence 3344555666555555443 11121 11222 23333 6666666666665553
No 332
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=28.13 E-value=3.6e+02 Score=24.92 Aligned_cols=114 Identities=11% Similarity=-0.007 Sum_probs=58.8
Q ss_pred HHHHHHhhccchhhhhhhHHHHHHHhCCCCcchhh---hHHHHHHhcCCChhHhHHHHhhcCCCCc---chHHHHHHHHH
Q 005136 25 LCLLKDITSQNLVIQGRALHGHLIKTGIHKERYLT---TRLLIMYLGSRKSLEANEIVKDLNGFDL---VVHNCMINANI 98 (712)
Q Consensus 25 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~ 98 (712)
+++|-..++.|+++.. +.+++.|..++...- .+-+...+..|+.+-++-+++.-..++. .... .+....
T Consensus 26 ~t~L~~Av~~g~~~~V----~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~-~~~~~~ 100 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLV----QQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGAT-PFILAA 100 (337)
T ss_dssp HHHHHHHHHTTCHHHH----HHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC-HHHHHH
T ss_pred ChHHHHHHHcCCHHHH----HHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCc-hhHHHH
Confidence 3455556677886544 455677877764321 2344555677888777777776533322 1122 222233
Q ss_pred hcCChHHHHHHHhhCCC---CChhHHHHHHHHHHccCChHHHHHHhhhC
Q 005136 99 QWGNLEEAQRLFDGMPE---RNEVSWTALISGFMKHGRVEESMWYFERN 144 (712)
Q Consensus 99 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 144 (712)
..+.......+...... .|...++. +...+..|..+-+..+++..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~d~~g~t~-l~~A~~~~~~~~~~~ll~~g 148 (337)
T 4g8k_A 101 IAGSVKLLKLFLSKGADVNECDFYGFTA-FMEAAVYGKVKALKFLYKRG 148 (337)
T ss_dssp HHTCHHHHHHHHTTTCCTTCBCTTCCBH-HHHHHHTTCHHHHHHHHHTT
T ss_pred hcccchhhHHhhhccchhhhhccCCCCH-HHHHHHcCcHHHHHHHHHcC
Confidence 34444444444443332 22222222 33345667777777766653
No 333
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=28.09 E-value=2.1e+02 Score=22.24 Aligned_cols=27 Identities=11% Similarity=0.271 Sum_probs=18.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCC
Q 005136 90 HNCMINANIQWGNLEEAQRLFDGMPER 116 (712)
Q Consensus 90 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 116 (712)
.+.++.=|...|+.++|...++++.-|
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p 36 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVP 36 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCC
Confidence 345666666777777777777777654
No 334
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=27.37 E-value=61 Score=23.83 Aligned_cols=33 Identities=9% Similarity=0.005 Sum_probs=16.8
Q ss_pred ChHHHHHHhhhCCCCCcccHHHHHHHHHhcCCh
Q 005136 133 RVEESMWYFERNPFQNVISWTAAICGFVQNGFS 165 (712)
Q Consensus 133 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~ 165 (712)
+.++|.++++.++.++..+|..++.++...|..
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~ 84 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQD 84 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcH
Confidence 345555555555555555555555555444443
No 335
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=27.07 E-value=1.8e+02 Score=23.37 Aligned_cols=62 Identities=13% Similarity=0.122 Sum_probs=40.3
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHhccc-chHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCCh
Q 005136 173 LKLLESGVKPNEVTFSSICKACAEIN-DFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEV 235 (712)
Q Consensus 173 ~~m~~~g~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 235 (712)
+.|.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 446677877666543 4555665655 6777888888888877666665555555666666543
No 336
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=25.66 E-value=2e+02 Score=25.00 Aligned_cols=84 Identities=14% Similarity=0.128 Sum_probs=0.0
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 604 LSEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 604 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
++++...|...+.--+..-|..+---|...-+--...=.+-....+.-..+.+|...+..+...|++.+|.++|+.=++.
T Consensus 100 LErc~~~F~~~~rYknD~RyLklWl~Ya~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 100 LERCTREFVRNPLYKDDVRYLRIWMQYVNYIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp HHHHHHHTTTCGGGTTCHHHHHHHHHHHTTCSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccCCHHHHHHHHHHHHccCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q ss_pred CCcc
Q 005136 684 GLRK 687 (712)
Q Consensus 684 ~~~~ 687 (712)
+-.|
T Consensus 180 ~A~P 183 (223)
T 4aez_C 180 KAKP 183 (223)
T ss_dssp TCBS
T ss_pred CCcc
No 337
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=25.57 E-value=1.1e+02 Score=24.91 Aligned_cols=24 Identities=13% Similarity=0.308 Sum_probs=11.9
Q ss_pred HHHHHHHHccCChHHHHHHhhhCC
Q 005136 122 TALISGFMKHGRVEESMWYFERNP 145 (712)
Q Consensus 122 ~~l~~~~~~~g~~~~a~~~~~~~~ 145 (712)
..++.-|...|+.++|.+.++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 344444555555555555555444
No 338
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=25.52 E-value=2.1e+02 Score=23.85 Aligned_cols=19 Identities=0% Similarity=-0.069 Sum_probs=12.1
Q ss_pred HHHccCChHHHHHHhhhCC
Q 005136 127 GFMKHGRVEESMWYFERNP 145 (712)
Q Consensus 127 ~~~~~g~~~~a~~~~~~~~ 145 (712)
..+..|+.+.+..++....
T Consensus 11 ~A~~~g~~~~v~~ll~~~~ 29 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTT 29 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTT
T ss_pred HHHHhccHHHHHHHHHcCC
Confidence 3456677777777776543
No 339
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=25.19 E-value=58 Score=26.67 Aligned_cols=52 Identities=2% Similarity=-0.103 Sum_probs=0.0
Q ss_pred HhhccchhhhhhhHHHHHHHhCCCC--cchhhhHHHH------HHhcCCChhHhHHHHhh
Q 005136 30 DITSQNLVIQGRALHGHLIKTGIHK--ERYLTTRLLI------MYLGSRKSLEANEIVKD 81 (712)
Q Consensus 30 ~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~------~~~~~~~~~~a~~~~~~ 81 (712)
.+.+.|++.+|-++++.+-+....+ ....+..||+ -..+.|+...|..++.+
T Consensus 41 ~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~ 100 (161)
T 2ijq_A 41 RLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRT 100 (161)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
No 340
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=24.75 E-value=3.3e+02 Score=23.26 Aligned_cols=14 Identities=21% Similarity=0.178 Sum_probs=6.4
Q ss_pred HhcCChHHHHHHHh
Q 005136 98 IQWGNLEEAQRLFD 111 (712)
Q Consensus 98 ~~~g~~~~A~~~~~ 111 (712)
++.|+++....++.
T Consensus 14 ~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 14 AYSGKLDELKERIL 27 (231)
T ss_dssp HHHTCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHH
Confidence 34444444444443
No 341
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.47 E-value=1.9e+02 Score=23.24 Aligned_cols=61 Identities=8% Similarity=0.046 Sum_probs=31.0
Q ss_pred HHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHhCCCCCccHHHHHHHHHHccCCh
Q 005136 174 KLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKAGFEKHVSVCNSLITLSLKMGEV 235 (712)
Q Consensus 174 ~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 235 (712)
.+.+.|++++..- ..++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-+
T Consensus 17 ~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3455565544332 234444444445566666666666665555554444445555555543
No 342
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=24.47 E-value=77 Score=25.60 Aligned_cols=43 Identities=5% Similarity=0.001 Sum_probs=24.1
Q ss_pred HHHhhccchhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCC
Q 005136 28 LKDITSQNLVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSR 70 (712)
Q Consensus 28 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 70 (712)
+..+...+....|.++++.+.+.++..+..|...-+..+...|
T Consensus 33 L~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 33 VSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3333344445566666666666665555555555566555555
No 343
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=24.13 E-value=4.2e+02 Score=24.48 Aligned_cols=74 Identities=9% Similarity=0.046 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCc--hHHHHHHHHHHHHcCCCCchhhHHHHH
Q 005136 419 WSAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVAS--LEKGKDLHGKIIKLGFPYDVFLGTALT 493 (712)
Q Consensus 419 ~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~ 493 (712)
...++.-|...|+.++|...++++...... .......+..++-+.++ .+....++..+.+.|+-+...+...+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~ 244 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYE 244 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 567888899999999999999998532111 12344455556665433 455677788887777665555444333
No 344
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=23.75 E-value=3.7e+02 Score=24.19 Aligned_cols=216 Identities=9% Similarity=-0.039 Sum_probs=0.0
Q ss_pred chhhHHHHHHHhhccchhhhhhhHHHHH---------HHhCCCCcchhhhHHHHHHhcCCChhHhHHHHhhcCCCCc--c
Q 005136 20 YIETCLCLLKDITSQNLVIQGRALHGHL---------IKTGIHKERYLTTRLLIMYLGSRKSLEANEIVKDLNGFDL--V 88 (712)
Q Consensus 20 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~ 88 (712)
+.....+.+.-++..|+..+...+.... +..++......-.+.+...+..|+.+-...+++.-..++. .
T Consensus 11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~ 90 (285)
T 3d9h_A 11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITA 90 (285)
T ss_dssp -------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECT
T ss_pred cchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCCCChhHHH--HHHHHHHccCChHHHHHHhhhCCCCCcccH-HHHHHHHHhcCCh
Q 005136 89 VHNCMINANIQWGNLEEAQRLFDGMPERNEVSWT--ALISGFMKHGRVEESMWYFERNPFQNVISW-TAAICGFVQNGFS 165 (712)
Q Consensus 89 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~li~~~~~~g~~ 165 (712)
.-...+...+..|+.+-+.-+++.-...+..... +-+...+..|+.+-+..+++....++.... ...+...+..|+.
T Consensus 91 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~ 170 (285)
T 3d9h_A 91 DHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHV 170 (285)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCH
T ss_pred CCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCH
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHH--HHHHHHhcccchHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHccCChHHHHHHH
Q 005136 166 FEALKLFLKLLESGVKPNEVTFS--SICKACAEINDFRLGLSVFGLIFKAGFEKHV-SVCNSLITLSLKMGEVDLARSVF 242 (712)
Q Consensus 166 ~~A~~~~~~m~~~g~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~ 242 (712)
+ +++.+.+.|..++..... +.+...+..|+. ++++.+++.|..++. ..-...+...+..|+.+-+.-++
T Consensus 171 ~----~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~----~~v~~Ll~~ga~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 242 (285)
T 3d9h_A 171 E----CVNSLIAYGGNIDHKISHLGTPLYLACENQQR----ACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLM 242 (285)
T ss_dssp H----HHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCH----HHHHHHHHTTCCTTCCBTTBCHHHHHHHTTCHHHHHHHH
T ss_pred H----HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcH----HHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Q ss_pred h
Q 005136 243 D 243 (712)
Q Consensus 243 ~ 243 (712)
+
T Consensus 243 ~ 243 (285)
T 3d9h_A 243 D 243 (285)
T ss_dssp H
T ss_pred H
No 345
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=23.66 E-value=2.2e+02 Score=23.71 Aligned_cols=90 Identities=14% Similarity=0.137 Sum_probs=45.9
Q ss_pred HccCChHHHHHHhhhCCCC-C-cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhh---HHHHHHHHhc-ccchHH
Q 005136 129 MKHGRVEESMWYFERNPFQ-N-VISWTAAICGFVQNGFSFEALKLFLKLLESGVKPNEVT---FSSICKACAE-INDFRL 202 (712)
Q Consensus 129 ~~~g~~~~a~~~~~~~~~~-~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~l~~~~~~-~~~~~~ 202 (712)
++.|+++....++...... + ..-+ +.+...+..|+.+.-.++.+.+++.|..++... .+.|..++.. ..+...
T Consensus 14 a~~g~~~~~~~l~~~~~~~~~~~~g~-T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~ 92 (186)
T 3t8k_A 14 AMLGTYEDFLELFEKGYEDKESVLKS-NILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITG 92 (186)
T ss_dssp HHHSCHHHHHHHHHHSSSCHHHHHTT-THHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHH
T ss_pred HHcCCHHHHHHHHhcCcccccccCCC-CHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhh
Confidence 4566776666666553321 1 1112 334444556666655667777777776665431 1222222221 223344
Q ss_pred HHHHHHHHHHhCCCCCc
Q 005136 203 GLSVFGLIFKAGFEKHV 219 (712)
Q Consensus 203 a~~~~~~~~~~~~~~~~ 219 (712)
..++.+.+++.|..++.
T Consensus 93 ~~~iv~~Ll~~Gadin~ 109 (186)
T 3t8k_A 93 TTELCKIFLEKGADITA 109 (186)
T ss_dssp HHHHHHHHHHTTCCSSS
T ss_pred HHHHHHHHHHCCCCCCc
Confidence 45666667777765543
No 346
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=23.19 E-value=1.8e+02 Score=25.94 Aligned_cols=20 Identities=25% Similarity=0.047 Sum_probs=11.4
Q ss_pred HhcCChhHHHHHHHHHHHcC
Q 005136 160 VQNGFSFEALKLFLKLLESG 179 (712)
Q Consensus 160 ~~~g~~~~A~~~~~~m~~~g 179 (712)
++.|+.+.+..+++...+.+
T Consensus 21 ~~~g~~~~v~~Ll~~~~~~~ 40 (273)
T 2pnn_A 21 VAQSNCQELESLLPFLQRSK 40 (273)
T ss_dssp HHTTCSSTTTTHHHHHHHSC
T ss_pred HHcCCHHHHHHHHHHHhhcc
Confidence 45566666666665555444
No 347
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=23.08 E-value=3e+02 Score=25.56 Aligned_cols=59 Identities=12% Similarity=0.044 Sum_probs=41.6
Q ss_pred HHhCCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhHHHHHHHHHhC
Q 005136 611 INSMPFEPD--SNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDAMNVRKLMTEK 683 (712)
Q Consensus 611 ~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~ 683 (712)
|...+.+|. ..++...+....+.+++..|..+.++++++.|.. . ..++|.+++..-.+.
T Consensus 187 FT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~-~-------------~~~qArkil~~ce~~ 247 (320)
T 3mkr_B 187 FTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKP-E-------------VAQQTRKILSACEKN 247 (320)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCH-H-------------HHHHHHHHHHHHHHS
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH-H-------------HHHHHHHHHHHHhcC
Confidence 334455665 4455677777899999999999999999998762 1 234577776666554
No 348
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=22.50 E-value=71 Score=23.18 Aligned_cols=66 Identities=9% Similarity=0.006 Sum_probs=0.0
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHccCChHHHHHHhhhCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 005136 106 AQRLFDGMPERNEVSWTALISGFMKHGRVEESMWYFERNPFQNVISWTAAICGFVQNGFSFEALKL 171 (712)
Q Consensus 106 A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 171 (712)
...+++.+.+.++.+-.-.-..-......++|.++++.++.++..+|..++.++...+...-|..+
T Consensus 24 v~~lld~L~~~~vlt~~~~e~I~~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La~~L 89 (94)
T 2p1h_A 24 TSYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLAALL 89 (94)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHTSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHcCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHHHHH
No 349
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=22.49 E-value=78 Score=20.65 Aligned_cols=29 Identities=28% Similarity=0.346 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 005136 166 FEALKLFLKLLESGVKPNEVTFSSICKAC 194 (712)
Q Consensus 166 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 194 (712)
++|...|.+|++..-.++..||...++.+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 56667776666554444556676666666
No 350
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.99 E-value=1.5e+02 Score=23.15 Aligned_cols=45 Identities=16% Similarity=-0.081 Sum_probs=25.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccc
Q 005136 154 AAICGFVQNGFSFEALKLFLKLLESGVKPNEVTFSSICKACAEIN 198 (712)
Q Consensus 154 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~ 198 (712)
.++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344455555556667777777766655555555544444444443
No 351
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=21.99 E-value=3.4e+02 Score=22.45 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=7.7
Q ss_pred HccCChHHHHHHhh
Q 005136 129 MKHGRVEESMWYFE 142 (712)
Q Consensus 129 ~~~g~~~~a~~~~~ 142 (712)
+..|+.+-+..+++
T Consensus 80 ~~~~~~~~~~~Ll~ 93 (201)
T 3hra_A 80 GAQGRTEILAYMLK 93 (201)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHh
Confidence 44556655555553
No 352
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=21.44 E-value=1.6e+02 Score=24.11 Aligned_cols=68 Identities=16% Similarity=0.090 Sum_probs=40.9
Q ss_pred HHHHHH-HHHHHcCCCCCHhhHHHHHHHHhcccchHHHHHHHHHHHHh--CCCCCccHHHHHHHHHHccCCh
Q 005136 167 EALKLF-LKLLESGVKPNEVTFSSICKACAEINDFRLGLSVFGLIFKA--GFEKHVSVCNSLITLSLKMGEV 235 (712)
Q Consensus 167 ~A~~~~-~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~ 235 (712)
.+++-+ +.+.+.|++++.. -..++..+...+..-.|.++++.+.+. +...+..|.-.-+..+...|-+
T Consensus 15 ~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 15 VLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 344333 3345567776553 235556666666777788888888777 6555655544455666666654
No 353
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=21.32 E-value=1.3e+02 Score=23.16 Aligned_cols=7 Identities=0% Similarity=-0.396 Sum_probs=2.5
Q ss_pred HHHHhcC
Q 005136 95 NANIQWG 101 (712)
Q Consensus 95 ~~~~~~g 101 (712)
.++.+.|
T Consensus 64 ~aL~~~~ 70 (131)
T 1te4_A 64 WIIGNFQ 70 (131)
T ss_dssp HHHGGGC
T ss_pred HHHHhcC
Confidence 3333333
No 354
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=21.17 E-value=4.1e+02 Score=25.28 Aligned_cols=26 Identities=8% Similarity=0.213 Sum_probs=14.0
Q ss_pred HHHHHHHHccCChHHHHHHhhhCCCC
Q 005136 122 TALISGFMKHGRVEESMWYFERNPFQ 147 (712)
Q Consensus 122 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 147 (712)
..++.-|...|++++|...++++..|
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~~p 41 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMRAP 41 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCc
Confidence 34455555555555555555555444
No 355
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=21.00 E-value=90 Score=25.65 Aligned_cols=56 Identities=11% Similarity=0.078 Sum_probs=27.2
Q ss_pred HHHhCCCCcchhhhHHHHHHhcCCChhHhHHHHhhcC----CC--CcchHHHHHHHHHhcCCh
Q 005136 47 LIKTGIHKERYLTTRLLIMYLGSRKSLEANEIVKDLN----GF--DLVVHNCMINANIQWGNL 103 (712)
Q Consensus 47 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~--~~~~~~~l~~~~~~~g~~ 103 (712)
+.+.|... +.-...++..+...++.-.|.++++.+. .| +..|-..-+..+.+.|-+
T Consensus 24 L~~~g~r~-T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 24 LRQGGLKY-TKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHTCCC-CHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCC-CHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 34445443 2233445555555556666666666542 12 233444444555555543
No 356
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=20.94 E-value=1.2e+02 Score=31.99 Aligned_cols=66 Identities=11% Similarity=0.064 Sum_probs=46.5
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHhcCCchhH
Q 005136 605 SEAEDFINSMPFEPDSNAWASLLSGCKTYKNEQIAERAVKNLWKLAEEHPAGYVLLSNIYASAGRWIDA 673 (712)
Q Consensus 605 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA 673 (712)
+.|.++.+-|+ ...............|++..|.+++..++..+|+|..+-..++.+|.+.|...|.
T Consensus 437 ~~a~~~v~~~g---g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~~ 502 (658)
T 2cfu_A 437 DSAGRYVEYMG---GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAEN 502 (658)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHhc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhccC
Confidence 44555566554 2333334444556788999999999999999999988888888888877754443
No 357
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=20.92 E-value=1.6e+02 Score=23.77 Aligned_cols=66 Identities=11% Similarity=0.089 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--chHHHHHHHHHHHHcCCCCch
Q 005136 420 SAIISGYLEHKQFDLVFAVFNEMLLSGEIPNKSTFSSVLCASASVA--SLEKGKDLHGKIIKLGFPYDV 486 (712)
Q Consensus 420 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~ 486 (712)
..++.-|...|+.++|...++++.... .........+..++-+.+ ..+.+..++..+.+.++-+..
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 445555555666666666666653110 011222333333444422 133445555555554444433
No 358
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=20.40 E-value=81 Score=24.90 Aligned_cols=45 Identities=13% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHhhccc-hhhhhhhHHHHHHHhCCCCcchhhhHHHHHHhcCC
Q 005136 26 CLLKDITSQN-LVIQGRALHGHLIKTGIHKERYLTTRLLIMYLGSR 70 (712)
Q Consensus 26 ~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 70 (712)
.++..+...+ ....|.++++.+.+.++..+..|...-+..+...|
T Consensus 22 ~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 22 KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
No 359
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.33 E-value=2.4e+02 Score=22.44 Aligned_cols=63 Identities=10% Similarity=0.043 Sum_probs=41.5
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCChH
Q 005136 305 RQMTRYSFKPNTSCFSIVLSALASLKALRSGMHVHAHVLKIGIEKDVFISNALIDLYSKCGETK 368 (712)
Q Consensus 305 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 368 (712)
+.+.+.|++++..-.. ++..+...+..-.|.++++.+.+.+...+..|..-.++.+...|-+.
T Consensus 11 ~~l~~~g~r~T~qR~~-Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITPQRHA-ILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCHHHHH-HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHHH-HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 3456677777665443 33344445566778888888887776667766666777788877654
No 360
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.25 E-value=1.2e+02 Score=26.14 Aligned_cols=47 Identities=4% Similarity=0.179 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcchhcCCCCch-HHH-----HHHHHHhhhcCChHHHHHHHHhC
Q 005136 568 VDKGLKYFNSMEPIYNIKPNG-RHY-----TCVVDMLSRSGRLSEAEDFINSM 614 (712)
Q Consensus 568 ~~~a~~~~~~~~~~~~~~p~~-~~~-----~~l~~~~~~~g~~~~A~~~~~~~ 614 (712)
.+.|+.+|+.+.+...+.... ... ...+-.|.+.|.+++|.+++++.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~ 140 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKH 140 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 466777777776443222211 111 12344567888888888888886
Done!