Query 005137
Match_columns 712
No_of_seqs 188 out of 1195
Neff 4.1
Searched_HMMs 46136
Date Thu Mar 28 18:39:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005137.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005137hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1968 Replication factor C, 100.0 3.2E-29 6.9E-34 291.4 11.9 453 8-556 373-863 (871)
2 KOG1969 DNA replication checkp 99.9 1.5E-22 3.3E-27 228.8 15.3 144 8-154 342-520 (877)
3 PRK04195 replication factor C 99.8 2.6E-18 5.6E-23 189.6 14.6 146 8-153 55-211 (482)
4 KOG0991 Replication factor C, 99.8 4.5E-19 9.9E-24 181.3 7.2 137 19-156 80-226 (333)
5 PRK04132 replication factor C 99.7 9.4E-17 2E-21 187.7 14.7 142 8-152 582-739 (846)
6 KOG0989 Replication factor C, 99.7 5.6E-17 1.2E-21 170.7 11.0 136 18-156 89-242 (346)
7 PLN03025 replication factor C 99.6 2E-15 4.4E-20 158.1 12.2 142 8-152 50-208 (319)
8 PRK07003 DNA polymerase III su 99.4 7.8E-13 1.7E-17 153.1 13.9 132 18-153 88-230 (830)
9 KOG2035 Replication factor C, 99.4 9E-13 2E-17 138.0 12.6 108 42-152 126-236 (351)
10 PRK14956 DNA polymerase III su 99.3 4.5E-12 9.7E-17 141.3 11.8 131 18-152 90-231 (484)
11 PRK14960 DNA polymerase III su 99.3 5.1E-12 1.1E-16 145.0 12.4 131 18-152 87-228 (702)
12 KOG0990 Replication factor C, 99.3 1.6E-12 3.6E-17 137.9 6.1 150 18-170 94-264 (360)
13 PF03215 Rad17: Rad17 cell cyc 99.3 6.2E-11 1.3E-15 133.5 15.6 110 42-151 131-270 (519)
14 PRK12323 DNA polymerase III su 99.3 1.7E-11 3.7E-16 140.6 11.0 133 18-153 93-235 (700)
15 PRK14958 DNA polymerase III su 99.3 2.4E-11 5.1E-16 136.5 11.3 132 19-153 89-230 (509)
16 COG0470 HolB ATPase involved i 99.2 5.7E-12 1.2E-16 129.0 5.5 121 18-152 74-207 (325)
17 PRK08691 DNA polymerase III su 99.2 6.6E-11 1.4E-15 136.6 12.6 130 18-151 88-228 (709)
18 PRK07994 DNA polymerase III su 99.2 9.4E-11 2E-15 134.9 12.5 131 18-152 88-229 (647)
19 PRK08451 DNA polymerase III su 99.2 1.7E-10 3.6E-15 130.4 13.7 130 16-149 84-223 (535)
20 PRK14964 DNA polymerase III su 99.2 1.1E-10 2.4E-15 130.7 11.8 134 13-150 80-223 (491)
21 TIGR00602 rad24 checkpoint pro 99.2 1.3E-10 2.9E-15 133.5 12.2 111 42-152 194-331 (637)
22 PHA02544 44 clamp loader, smal 99.2 2.6E-10 5.5E-15 118.2 13.2 140 9-151 60-216 (316)
23 PRK14951 DNA polymerase III su 99.2 1.5E-10 3.3E-15 132.6 12.6 131 18-152 93-234 (618)
24 PRK14957 DNA polymerase III su 99.2 1.9E-10 4.1E-15 130.3 13.2 129 18-150 88-226 (546)
25 PRK00440 rfc replication facto 99.2 4.9E-10 1.1E-14 115.0 15.0 140 10-152 56-211 (319)
26 PRK14949 DNA polymerase III su 99.2 1.7E-10 3.7E-15 135.9 12.8 125 18-146 88-222 (944)
27 PRK14969 DNA polymerase III su 99.2 1.7E-10 3.7E-15 130.0 12.0 127 18-148 88-224 (527)
28 PRK14952 DNA polymerase III su 99.1 2.6E-10 5.6E-15 130.1 13.1 130 18-151 87-226 (584)
29 PRK14962 DNA polymerase III su 99.1 2.4E-10 5.2E-15 127.4 12.6 128 19-150 87-224 (472)
30 PRK14963 DNA polymerase III su 99.1 5.8E-10 1.3E-14 125.3 14.4 131 17-151 84-224 (504)
31 PRK07764 DNA polymerase III su 99.1 4.6E-10 1E-14 132.3 13.2 131 17-151 88-228 (824)
32 PRK14961 DNA polymerase III su 99.1 7.2E-10 1.6E-14 119.0 12.8 129 18-150 88-226 (363)
33 PRK14965 DNA polymerase III su 99.1 6.5E-10 1.4E-14 126.5 11.5 129 17-149 87-225 (576)
34 PRK14959 DNA polymerase III su 99.0 7.9E-10 1.7E-14 126.8 11.7 128 18-149 88-225 (624)
35 PRK06645 DNA polymerase III su 99.0 1.4E-09 3E-14 122.4 13.2 129 18-150 97-235 (507)
36 KOG1970 Checkpoint RAD17-RFC c 99.0 2.1E-09 4.6E-14 120.7 13.0 144 9-152 127-323 (634)
37 PRK06305 DNA polymerase III su 99.0 1.9E-09 4.2E-14 119.5 11.9 130 17-150 89-228 (451)
38 PRK14971 DNA polymerase III su 99.0 2.5E-09 5.4E-14 122.8 12.9 129 17-149 89-227 (614)
39 PRK05563 DNA polymerase III su 99.0 4.2E-09 9E-14 119.7 12.8 129 17-149 87-225 (559)
40 PRK09111 DNA polymerase III su 98.9 4.8E-09 1E-13 120.2 12.4 132 13-148 96-237 (598)
41 PRK14948 DNA polymerase III su 98.9 6.8E-09 1.5E-13 119.4 13.5 132 17-152 89-230 (620)
42 TIGR02397 dnaX_nterm DNA polym 98.9 8.8E-09 1.9E-13 107.9 12.2 130 17-150 85-224 (355)
43 PRK12402 replication factor C 98.9 1.2E-08 2.5E-13 105.9 13.0 108 43-153 125-235 (337)
44 PRK14970 DNA polymerase III su 98.9 9.8E-09 2.1E-13 109.4 12.7 132 16-151 75-216 (367)
45 PRK14953 DNA polymerase III su 98.9 1.5E-08 3.3E-13 113.5 12.2 129 18-150 88-226 (486)
46 PRK07133 DNA polymerase III su 98.8 1.4E-08 3.1E-13 118.2 12.3 131 15-149 84-224 (725)
47 PRK14950 DNA polymerase III su 98.8 1.8E-08 3.9E-13 115.0 12.6 132 15-150 86-227 (585)
48 PRK05896 DNA polymerase III su 98.8 1.1E-08 2.5E-13 117.0 10.9 132 17-152 87-228 (605)
49 PRK14955 DNA polymerase III su 98.8 1.7E-08 3.7E-13 109.9 10.4 129 17-149 95-233 (397)
50 PRK14954 DNA polymerase III su 98.8 2.9E-08 6.4E-13 114.2 12.5 130 17-150 95-234 (620)
51 PRK06647 DNA polymerase III su 98.8 2.7E-08 5.9E-13 113.4 11.7 127 17-147 87-223 (563)
52 COG2812 DnaX DNA polymerase II 98.7 3.8E-08 8.3E-13 111.0 8.7 136 18-156 88-233 (515)
53 PRK13342 recombination factor 98.6 3.9E-07 8.5E-12 99.6 12.7 141 8-151 52-203 (413)
54 PRK13341 recombination factor 98.5 3.5E-07 7.6E-12 107.2 10.0 138 8-150 68-223 (725)
55 PRK08727 hypothetical protein; 98.5 1.3E-06 2.8E-11 88.7 11.5 105 44-149 94-209 (233)
56 COG2256 MGS1 ATPase related to 98.4 1.7E-06 3.7E-11 95.1 10.4 140 8-152 64-220 (436)
57 PRK09112 DNA polymerase III su 98.3 2.3E-06 5.1E-11 92.6 10.8 101 42-147 140-243 (351)
58 PRK08084 DNA replication initi 98.3 2.7E-06 5.8E-11 86.5 10.6 106 44-149 98-214 (235)
59 PRK08903 DnaA regulatory inact 98.2 1.4E-05 3.1E-10 79.6 13.0 128 16-149 69-204 (227)
60 TIGR00635 ruvB Holliday juncti 98.2 8.6E-06 1.9E-10 84.3 11.8 137 8-148 46-205 (305)
61 TIGR00678 holB DNA polymerase 98.2 2.8E-06 6.1E-11 82.4 7.2 91 42-141 95-188 (188)
62 PRK06893 DNA replication initi 98.2 9E-06 1.9E-10 82.3 10.6 106 43-149 91-208 (229)
63 PRK06620 hypothetical protein; 98.2 1.8E-05 4E-10 79.9 12.2 104 43-149 85-194 (214)
64 PRK09087 hypothetical protein; 98.2 1.5E-05 3.2E-10 81.2 11.6 102 44-146 88-197 (226)
65 TIGR01128 holA DNA polymerase 98.1 2.1E-05 4.6E-10 80.7 12.3 132 17-151 18-160 (302)
66 PRK00080 ruvB Holliday junctio 98.1 1.7E-05 3.7E-10 84.0 11.9 136 8-147 67-225 (328)
67 PRK07399 DNA polymerase III su 98.1 9.8E-06 2.1E-10 86.5 9.8 100 43-148 124-225 (314)
68 TIGR03420 DnaA_homol_Hda DnaA 98.1 1.8E-05 4E-10 77.9 10.8 130 17-149 66-206 (226)
69 TIGR02881 spore_V_K stage V sp 97.9 5.2E-05 1.1E-09 77.9 10.7 135 18-152 75-238 (261)
70 PRK05642 DNA replication initi 97.9 0.00012 2.6E-09 74.7 12.2 105 44-149 98-213 (234)
71 PRK07940 DNA polymerase III su 97.9 3.9E-05 8.4E-10 84.5 9.0 96 42-145 116-214 (394)
72 PRK00149 dnaA chromosomal repl 97.8 8.1E-05 1.7E-09 82.5 10.2 140 9-151 165-332 (450)
73 TIGR00362 DnaA chromosomal rep 97.8 0.00023 5E-09 77.6 12.8 140 9-151 153-320 (405)
74 TIGR02928 orc1/cdc6 family rep 97.7 9.1E-05 2E-09 78.4 8.8 107 43-149 129-251 (365)
75 PF00308 Bac_DnaA: Bacterial d 97.7 0.00027 5.8E-09 71.7 11.7 103 43-146 97-210 (219)
76 PRK12422 chromosomal replicati 97.7 0.00024 5.2E-09 79.5 11.3 106 43-149 202-318 (445)
77 PTZ00112 origin recognition co 97.7 0.00012 2.5E-09 87.6 9.1 105 44-151 870-988 (1164)
78 TIGR02902 spore_lonB ATP-depen 97.7 0.00025 5.4E-09 80.8 11.4 104 43-150 175-310 (531)
79 PRK07471 DNA polymerase III su 97.7 0.00024 5.1E-09 77.6 10.4 98 42-146 140-240 (365)
80 PRK14088 dnaA chromosomal repl 97.6 0.00016 3.4E-09 80.6 8.4 103 43-146 194-307 (440)
81 PRK14087 dnaA chromosomal repl 97.6 0.00038 8.3E-09 77.9 11.2 105 43-148 206-323 (450)
82 PRK05564 DNA polymerase III su 97.6 0.00025 5.3E-09 74.8 9.0 96 42-144 92-190 (313)
83 PRK05707 DNA polymerase III su 97.6 0.00024 5.2E-09 76.5 9.0 96 43-145 106-204 (328)
84 PRK08769 DNA polymerase III su 97.5 0.0004 8.7E-09 74.8 9.2 94 43-145 113-209 (319)
85 PRK00411 cdc6 cell division co 97.5 0.00053 1.2E-08 73.5 9.9 106 43-148 138-258 (394)
86 PF06144 DNA_pol3_delta: DNA p 97.4 0.00046 9.9E-09 65.4 7.6 131 18-149 30-171 (172)
87 PRK07993 DNA polymerase III su 97.4 0.00038 8.1E-09 75.2 7.8 96 43-146 108-206 (334)
88 CHL00181 cbbX CbbX; Provisiona 97.3 0.00064 1.4E-08 71.9 8.4 134 19-152 93-254 (287)
89 PRK08058 DNA polymerase III su 97.3 0.00084 1.8E-08 72.0 8.7 93 43-145 110-205 (329)
90 TIGR00763 lon ATP-dependent pr 97.3 0.0011 2.4E-08 78.6 10.2 128 7-134 362-534 (775)
91 PRK06871 DNA polymerase III su 97.1 0.002 4.4E-08 69.7 9.5 95 43-145 107-204 (325)
92 TIGR02903 spore_lon_C ATP-depe 97.1 0.0041 8.8E-08 72.4 12.5 103 43-149 265-399 (615)
93 PRK05574 holA DNA polymerase I 97.1 0.0052 1.1E-07 64.5 12.2 131 17-150 48-194 (340)
94 PRK14086 dnaA chromosomal repl 97.1 0.0034 7.3E-08 73.2 11.7 103 44-147 378-491 (617)
95 PLN00020 ribulose bisphosphate 97.1 0.0017 3.6E-08 72.0 8.2 129 6-136 162-330 (413)
96 PF05496 RuvB_N: Holliday junc 97.0 0.0043 9.3E-08 64.6 10.3 135 8-148 66-225 (233)
97 PRK14700 recombination factor 96.9 0.0027 5.9E-08 68.2 8.4 64 87-150 23-93 (300)
98 PRK06585 holA DNA polymerase I 96.9 0.0056 1.2E-07 65.1 10.7 127 18-151 52-191 (343)
99 PF00004 AAA: ATPase family as 96.9 0.0011 2.3E-08 59.1 4.1 91 8-98 14-127 (132)
100 COG1222 RPT1 ATP-dependent 26S 96.9 0.0045 9.8E-08 68.2 9.4 147 6-152 199-375 (406)
101 TIGR02880 cbbX_cfxQ probable R 96.9 0.004 8.6E-08 65.7 8.8 134 19-152 92-253 (284)
102 KOG2028 ATPase related to the 96.8 0.0014 3E-08 72.4 5.2 130 14-148 187-340 (554)
103 PRK06090 DNA polymerase III su 96.8 0.0038 8.3E-08 67.4 8.5 93 42-145 107-202 (319)
104 PRK07452 DNA polymerase III su 96.8 0.008 1.7E-07 63.4 10.1 134 17-151 32-179 (326)
105 PRK03992 proteasome-activating 96.6 0.0057 1.2E-07 67.2 8.0 145 7-152 180-355 (389)
106 TIGR03015 pepcterm_ATPase puta 96.6 0.01 2.2E-07 60.2 8.9 104 43-146 123-240 (269)
107 PRK06964 DNA polymerase III su 96.5 0.011 2.3E-07 64.6 9.3 93 42-145 131-226 (342)
108 PTZ00454 26S protease regulato 96.5 0.0073 1.6E-07 67.0 8.1 145 7-152 194-369 (398)
109 CHL00176 ftsH cell division pr 96.5 0.0098 2.1E-07 69.7 9.4 143 7-150 231-404 (638)
110 PRK10787 DNA-binding ATP-depen 96.5 0.016 3.6E-07 69.3 11.5 137 8-145 365-551 (784)
111 CHL00195 ycf46 Ycf46; Provisio 96.5 0.006 1.3E-07 69.4 7.4 143 7-150 274-445 (489)
112 PRK07132 DNA polymerase III su 96.4 0.015 3.2E-07 62.4 9.5 94 42-145 89-185 (299)
113 PF06068 TIP49: TIP49 C-termin 96.3 0.011 2.5E-07 65.4 8.0 102 44-148 279-395 (398)
114 PF13177 DNA_pol3_delta2: DNA 96.2 0.0041 8.8E-08 60.3 3.6 83 17-103 67-162 (162)
115 TIGR01242 26Sp45 26S proteasom 96.2 0.012 2.5E-07 63.7 7.1 145 7-151 171-345 (364)
116 PRK08485 DNA polymerase III su 96.2 0.0086 1.9E-07 61.4 5.8 95 47-145 58-168 (206)
117 PRK07276 DNA polymerase III su 96.0 0.022 4.9E-07 60.9 8.2 92 43-145 104-198 (290)
118 TIGR01241 FtsH_fam ATP-depende 96.0 0.01 2.2E-07 67.0 5.7 141 7-149 103-275 (495)
119 COG1474 CDC6 Cdc6-related prot 95.8 0.032 6.9E-07 61.4 8.5 107 43-152 123-245 (366)
120 COG0593 DnaA ATPase involved i 95.7 0.078 1.7E-06 59.4 11.2 108 44-152 176-297 (408)
121 PRK07914 hypothetical protein; 95.7 0.09 1.9E-06 56.1 11.1 129 17-150 37-176 (320)
122 PRK05917 DNA polymerase III su 95.6 0.035 7.6E-07 59.6 8.0 80 42-139 94-176 (290)
123 PRK05629 hypothetical protein; 95.6 0.092 2E-06 55.8 10.9 128 17-150 37-174 (318)
124 COG1224 TIP49 DNA helicase TIP 95.4 0.086 1.9E-06 58.6 10.0 100 44-146 292-406 (450)
125 PTZ00361 26 proteosome regulat 95.2 0.025 5.5E-07 63.7 5.4 145 7-152 232-407 (438)
126 PRK05818 DNA polymerase III su 95.1 0.064 1.4E-06 56.9 7.6 95 42-148 87-194 (261)
127 KOG2680 DNA helicase TIP49, TB 94.9 0.15 3.3E-06 55.8 9.9 106 44-152 289-409 (454)
128 PRK08699 DNA polymerase III su 94.7 0.047 1E-06 59.1 5.5 69 42-113 112-183 (325)
129 TIGR01243 CDC48 AAA family ATP 94.4 0.087 1.9E-06 62.4 7.2 141 7-149 502-672 (733)
130 PRK10733 hflB ATP-dependent me 94.1 0.17 3.6E-06 59.5 8.7 143 8-152 201-375 (644)
131 PRK08487 DNA polymerase III su 94.0 0.71 1.5E-05 49.6 12.7 114 37-154 66-187 (328)
132 TIGR02639 ClpA ATP-dependent C 93.6 0.28 6.1E-06 58.3 9.4 133 8-143 500-705 (731)
133 TIGR01243 CDC48 AAA family ATP 93.3 0.22 4.8E-06 59.1 8.0 127 7-136 227-379 (733)
134 COG0466 Lon ATP-dependent Lon 93.1 0.47 1E-05 56.6 9.9 126 8-134 366-537 (782)
135 KOG0743 AAA+-type ATPase [Post 93.0 0.48 1E-05 53.9 9.6 140 8-150 251-432 (457)
136 KOG1942 DNA helicase, TBP-inte 92.9 0.56 1.2E-05 51.4 9.6 101 43-146 296-412 (456)
137 KOG2004 Mitochondrial ATP-depe 92.9 0.17 3.7E-06 60.3 6.0 143 8-150 454-643 (906)
138 KOG0727 26S proteasome regulat 92.8 0.32 7E-06 52.3 7.4 115 7-121 204-345 (408)
139 PRK11034 clpA ATP-dependent Cl 92.8 0.49 1.1E-05 57.0 9.8 133 8-143 504-709 (758)
140 PF01637 Arch_ATPase: Archaeal 92.4 0.3 6.5E-06 47.3 6.2 97 44-141 119-231 (234)
141 TIGR03345 VI_ClpV1 type VI sec 92.3 0.65 1.4E-05 56.6 10.1 140 8-150 612-828 (852)
142 TIGR02640 gas_vesic_GvpN gas v 91.9 1 2.2E-05 46.9 9.9 119 8-134 37-212 (262)
143 KOG0728 26S proteasome regulat 91.7 0.34 7.5E-06 52.0 6.1 143 6-151 195-370 (404)
144 TIGR03689 pup_AAA proteasome A 91.3 0.32 6.9E-06 56.1 5.9 100 43-144 289-405 (512)
145 KOG2227 Pre-initiation complex 91.1 0.21 4.6E-06 57.0 4.0 103 44-146 257-373 (529)
146 KOG0651 26S proteasome regulat 91.0 0.49 1.1E-05 52.1 6.5 127 6-136 180-339 (388)
147 PRK05342 clpX ATP-dependent pr 91.0 0.94 2E-05 50.9 9.0 138 7-144 123-373 (412)
148 CHL00095 clpC Clp protease ATP 90.8 1 2.2E-05 54.5 9.5 133 8-143 555-775 (821)
149 KOG0733 Nuclear AAA ATPase (VC 90.2 1.8 3.8E-05 51.4 10.4 142 7-150 238-412 (802)
150 COG0464 SpoVK ATPases of the A 90.0 0.92 2E-05 51.1 7.9 140 7-146 291-459 (494)
151 cd00009 AAA The AAA+ (ATPases 89.9 0.5 1.1E-05 41.4 4.6 77 9-85 36-131 (151)
152 PRK06581 DNA polymerase III su 89.4 0.6 1.3E-05 49.8 5.4 68 42-112 88-158 (263)
153 PRK15115 response regulator Gl 89.2 3.3 7.2E-05 45.6 11.3 105 43-150 228-365 (444)
154 TIGR02639 ClpA ATP-dependent C 88.7 0.83 1.8E-05 54.5 6.6 133 17-149 238-402 (731)
155 TIGR03345 VI_ClpV1 type VI sec 88.2 1.1 2.3E-05 54.7 7.2 105 43-147 280-405 (852)
156 TIGR02974 phageshock_pspF psp 87.9 2.4 5.1E-05 46.1 8.9 106 43-151 93-232 (329)
157 PRK05907 hypothetical protein; 87.6 1.9 4.2E-05 46.6 8.0 110 38-151 65-184 (311)
158 TIGR03346 chaperone_ClpB ATP-d 87.4 3.6 7.8E-05 50.1 11.0 138 8-148 611-821 (852)
159 PRK13695 putative NTPase; Prov 87.1 1.6 3.6E-05 42.1 6.5 70 43-113 96-170 (174)
160 COG1223 Predicted ATPase (AAA+ 87.1 0.88 1.9E-05 49.3 4.9 132 7-142 166-327 (368)
161 CHL00195 ycf46 Ycf46; Provisio 86.5 4.2 9E-05 46.9 10.3 98 44-144 82-188 (489)
162 TIGR01817 nifA Nif-specific re 86.3 5.5 0.00012 45.6 11.2 105 43-150 290-426 (534)
163 COG1466 HolA DNA polymerase II 86.2 5 0.00011 43.4 10.2 111 37-152 69-190 (334)
164 KOG0733 Nuclear AAA ATPase (VC 85.6 2.1 4.6E-05 50.7 7.4 146 6-152 559-736 (802)
165 KOG0737 AAA+-type ATPase [Post 85.5 0.7 1.5E-05 51.5 3.3 133 7-139 142-301 (386)
166 PRK11034 clpA ATP-dependent Cl 85.2 2.2 4.7E-05 51.6 7.5 108 43-150 278-407 (758)
167 TIGR02915 PEP_resp_reg putativ 85.1 6.8 0.00015 43.2 10.8 106 43-151 233-371 (445)
168 PRK11608 pspF phage shock prot 84.8 5.8 0.00012 42.9 9.9 106 43-151 100-239 (326)
169 PRK10865 protein disaggregatio 84.5 5.6 0.00012 48.7 10.6 124 8-134 614-807 (857)
170 PRK10365 transcriptional regul 84.2 7 0.00015 42.8 10.3 105 43-150 233-370 (441)
171 PRK11388 DNA-binding transcrip 83.7 7.7 0.00017 45.4 11.0 106 43-151 416-553 (638)
172 KOG0730 AAA+-type ATPase [Post 83.4 2.9 6.3E-05 49.8 7.3 128 7-136 233-384 (693)
173 PF13401 AAA_22: AAA domain; P 83.0 0.47 1E-05 42.6 0.6 37 45-83 89-125 (131)
174 PRK10820 DNA-binding transcrip 81.8 9.8 0.00021 43.9 10.7 105 43-150 298-435 (520)
175 KOG1514 Origin recognition com 81.7 4.4 9.5E-05 48.7 7.9 108 42-154 507-630 (767)
176 PRK05022 anaerobic nitric oxid 80.9 12 0.00026 42.9 11.0 106 43-151 281-419 (509)
177 PRK11361 acetoacetate metaboli 80.3 13 0.00028 41.0 10.6 106 43-151 237-375 (457)
178 smart00382 AAA ATPases associa 79.4 6.9 0.00015 33.6 6.6 40 44-83 79-125 (148)
179 TIGR01818 ntrC nitrogen regula 79.1 10 0.00023 41.9 9.5 105 44-151 229-366 (463)
180 TIGR00382 clpX endopeptidase C 78.1 7.6 0.00017 44.0 8.1 64 7-71 131-220 (413)
181 PHA02244 ATPase-like protein 78.0 4.8 0.0001 45.3 6.4 96 8-106 135-265 (383)
182 TIGR03346 chaperone_ClpB ATP-d 78.0 4.3 9.3E-05 49.5 6.6 108 43-150 266-394 (852)
183 PRK15429 formate hydrogenlyase 76.8 18 0.0004 42.9 11.2 106 43-151 470-608 (686)
184 CHL00206 ycf2 Ycf2; Provisiona 76.4 8.5 0.00018 51.1 8.6 111 43-153 1732-1861(2281)
185 PF07693 KAP_NTPase: KAP famil 76.2 7.4 0.00016 40.7 7.0 74 42-115 171-263 (325)
186 PRK15424 propionate catabolism 74.1 27 0.00059 40.9 11.4 104 44-150 323-463 (538)
187 PF05729 NACHT: NACHT domain 73.0 8.6 0.00019 35.3 5.8 74 42-115 80-163 (166)
188 KOG0652 26S proteasome regulat 72.7 11 0.00024 41.3 7.1 73 42-115 263-354 (424)
189 KOG0738 AAA+-type ATPase [Post 72.1 5.4 0.00012 45.4 4.9 141 6-149 259-432 (491)
190 TIGR02329 propionate_PrpR prop 72.0 20 0.00042 41.9 9.6 104 44-150 308-448 (526)
191 PRK10923 glnG nitrogen regulat 72.0 31 0.00068 38.4 10.9 106 43-151 232-370 (469)
192 PRK05201 hslU ATP-dependent pr 69.4 6.5 0.00014 45.0 4.9 92 43-134 249-380 (443)
193 COG2255 RuvB Holliday junction 68.8 48 0.001 36.8 10.9 136 8-147 68-226 (332)
194 TIGR01587 cas3_core CRISPR-ass 67.3 10 0.00022 40.5 5.7 39 45-83 126-164 (358)
195 CHL00095 clpC Clp protease ATP 66.9 9.6 0.00021 46.4 6.0 133 17-150 235-399 (821)
196 KOG0740 AAA+-type ATPase [Post 66.0 9.9 0.00022 43.4 5.5 141 7-147 201-369 (428)
197 PF07724 AAA_2: AAA domain (Cd 66.0 3.4 7.5E-05 40.8 1.7 66 8-73 19-106 (171)
198 COG1618 Predicted nucleotide k 65.4 14 0.00031 37.7 5.8 71 44-115 101-175 (179)
199 PF14516 AAA_35: AAA-like doma 64.8 39 0.00084 36.7 9.5 92 42-137 126-232 (331)
200 KOG0731 AAA+-type ATPase conta 64.0 20 0.00042 43.9 7.6 148 6-153 358-537 (774)
201 KOG0729 26S proteasome regulat 63.8 7.7 0.00017 42.5 3.9 143 6-151 225-400 (435)
202 TIGR00390 hslU ATP-dependent p 63.4 9.4 0.0002 43.7 4.7 92 43-134 247-378 (441)
203 PF05621 TniB: Bacterial TniB 62.5 6.6 0.00014 42.9 3.2 111 43-153 145-273 (302)
204 PF13173 AAA_14: AAA domain 61.8 17 0.00037 33.5 5.3 92 11-107 21-127 (128)
205 PF01695 IstB_IS21: IstB-like 61.8 3.9 8.5E-05 40.6 1.2 71 13-84 71-150 (178)
206 cd01120 RecA-like_NTPases RecA 59.9 8.9 0.00019 34.8 3.1 45 42-86 84-139 (165)
207 PF05673 DUF815: Protein of un 58.8 29 0.00062 37.2 7.0 110 15-128 78-220 (249)
208 KOG0734 AAA+-type ATPase conta 57.7 24 0.00052 41.9 6.6 143 6-153 351-525 (752)
209 KOG0726 26S proteasome regulat 57.1 19 0.00041 40.0 5.4 141 6-149 233-406 (440)
210 KOG2170 ATPase of the AAA+ sup 56.6 22 0.00048 39.4 5.8 46 38-86 173-227 (344)
211 smart00350 MCM minichromosome 53.1 69 0.0015 37.0 9.4 91 43-136 300-432 (509)
212 COG0714 MoxR-like ATPases [Gen 52.2 99 0.0021 33.3 9.9 95 7-104 58-191 (329)
213 PRK08181 transposase; Validate 51.4 13 0.00027 39.8 3.0 70 14-84 131-209 (269)
214 PF03266 NTPase_1: NTPase; In 50.7 15 0.00033 36.3 3.3 41 43-84 95-135 (168)
215 TIGR01650 PD_CobS cobaltochela 49.4 54 0.0012 36.4 7.5 127 8-140 80-257 (327)
216 PRK10865 protein disaggregatio 49.2 28 0.0006 42.9 5.8 93 43-135 271-378 (857)
217 KOG0735 AAA+-type ATPase [Post 49.0 56 0.0012 40.2 7.9 94 42-136 493-607 (952)
218 PF00931 NB-ARC: NB-ARC domain 48.0 18 0.00038 37.1 3.4 88 42-136 100-194 (287)
219 TIGR02031 BchD-ChlD magnesium 47.4 48 0.001 39.2 7.1 102 43-147 84-233 (589)
220 TIGR02030 BchI-ChlI magnesium 47.3 85 0.0018 34.7 8.6 65 37-104 125-207 (337)
221 PRK13407 bchI magnesium chelat 47.1 71 0.0015 35.3 8.0 59 43-104 128-204 (334)
222 PF00270 DEAD: DEAD/DEAH box h 45.6 11 0.00023 35.2 1.2 41 43-83 119-161 (169)
223 KOG0730 AAA+-type ATPase [Post 44.5 32 0.00069 41.4 5.1 145 6-154 482-657 (693)
224 PF12774 AAA_6: Hydrolytic ATP 44.5 59 0.0013 34.0 6.6 113 10-130 50-192 (231)
225 PF15471 TMEM171: Transmembran 43.8 15 0.00033 39.8 2.2 64 523-589 113-179 (319)
226 COG0465 HflB ATP-dependent Zn 43.7 52 0.0011 39.3 6.7 142 6-150 197-371 (596)
227 PRK08939 primosomal protein Dn 43.5 30 0.00064 37.6 4.4 76 8-84 172-261 (306)
228 PRK08116 hypothetical protein; 43.4 42 0.0009 35.6 5.4 74 8-84 130-221 (268)
229 COG1221 PspF Transcriptional r 42.1 66 0.0014 36.7 6.9 134 16-152 129-309 (403)
230 PRK13765 ATP-dependent proteas 38.8 94 0.002 37.4 7.8 89 43-134 226-352 (637)
231 PF07728 AAA_5: AAA domain (dy 36.9 30 0.00065 31.8 2.8 61 9-72 16-91 (139)
232 TIGR02442 Cob-chelat-sub cobal 36.7 94 0.002 37.1 7.4 27 43-72 126-152 (633)
233 COG2204 AtoC Response regulato 36.6 2.3E+02 0.0049 33.1 10.1 107 43-152 235-374 (464)
234 CHL00081 chlI Mg-protoporyphyr 36.2 1.6E+02 0.0035 33.0 8.6 103 42-147 143-297 (350)
235 TIGR00764 lon_rel lon-related 35.6 99 0.0021 36.8 7.3 88 43-133 217-342 (608)
236 PRK07952 DNA replication prote 34.8 67 0.0015 33.9 5.2 76 8-84 115-205 (244)
237 TIGR00174 miaA tRNA isopenteny 34.2 2E+02 0.0043 31.4 8.8 85 62-153 77-169 (287)
238 PF14532 Sigma54_activ_2: Sigm 34.0 56 0.0012 30.5 4.1 39 43-84 69-110 (138)
239 cd03227 ABC_Class2 ABC-type Cl 33.8 87 0.0019 30.2 5.5 42 43-85 99-142 (162)
240 PRK12377 putative replication 33.1 83 0.0018 33.3 5.6 75 9-84 118-206 (248)
241 cd00046 DEXDc DEAD-like helica 32.5 43 0.00092 28.8 2.9 20 43-62 103-122 (144)
242 KOG0736 Peroxisome assembly fa 32.4 1.2E+02 0.0027 37.7 7.4 112 9-120 448-581 (953)
243 PRK00091 miaA tRNA delta(2)-is 31.9 1.1E+02 0.0024 33.4 6.4 84 63-153 83-174 (307)
244 KOG0732 AAA+-type ATPase conta 31.8 2.5E+02 0.0055 36.0 10.1 100 41-140 361-480 (1080)
245 COG4098 comFA Superfamily II D 31.0 43 0.00094 37.9 3.2 43 42-84 201-244 (441)
246 PLN03210 Resistant to P. syrin 31.0 1.2E+02 0.0025 38.7 7.3 69 42-116 295-365 (1153)
247 KOG0739 AAA+-type ATPase [Post 31.0 50 0.0011 37.0 3.6 135 8-143 182-348 (439)
248 PRK13539 cytochrome c biogenes 30.3 1.1E+02 0.0024 30.4 5.8 58 42-104 144-203 (207)
249 smart00487 DEXDc DEAD-like hel 28.6 35 0.00076 31.4 1.8 40 43-84 129-170 (201)
250 KOG0331 ATP-dependent RNA heli 28.3 32 0.00068 40.4 1.7 33 42-76 238-270 (519)
251 PF00493 MCM: MCM2/3/5 family 27.3 96 0.0021 33.9 5.1 40 43-85 121-175 (331)
252 PRK06526 transposase; Provisio 27.2 1E+02 0.0022 32.6 5.1 41 43-84 159-201 (254)
253 TIGR02562 cas3_yersinia CRISPR 26.8 90 0.002 39.8 5.2 42 43-84 593-634 (1110)
254 PRK09694 helicase Cas3; Provis 25.5 93 0.002 38.8 5.0 42 42-83 438-479 (878)
255 COG1220 HslU ATP-dependent pro 25.0 97 0.0021 35.3 4.5 91 43-133 250-380 (444)
256 PF02463 SMC_N: RecF/RecN/SMC 24.9 1.2E+02 0.0027 30.1 5.0 39 43-83 158-198 (220)
257 PRK13406 bchD magnesium chelat 24.8 4.3E+02 0.0093 31.7 10.0 101 43-146 93-224 (584)
258 cd00268 DEADc DEAD-box helicas 24.2 69 0.0015 31.1 3.0 39 43-83 143-183 (203)
259 TIGR01277 thiQ thiamine ABC tr 24.0 1.6E+02 0.0034 29.4 5.5 44 42-85 145-190 (213)
260 PRK06921 hypothetical protein; 23.9 1.3E+02 0.0029 31.8 5.3 73 9-84 134-225 (266)
261 cd03301 ABC_MalK_N The N-termi 23.2 1.7E+02 0.0037 29.0 5.6 44 42-85 147-192 (213)
262 PF03474 DMA: DMRTA motif; In 23.1 1.1E+02 0.0023 24.5 3.2 23 123-145 16-38 (39)
263 cd03239 ABC_SMC_head The struc 22.5 1.8E+02 0.0039 28.8 5.6 54 43-99 116-172 (178)
264 PRK04841 transcriptional regul 22.3 4.1E+02 0.0088 32.1 9.4 95 42-141 120-222 (903)
265 cd03300 ABC_PotA_N PotA is an 21.8 1.8E+02 0.004 29.4 5.6 52 42-94 147-200 (232)
266 PRK09183 transposase/IS protei 21.4 83 0.0018 33.2 3.1 74 10-84 123-206 (259)
267 KOG4458 Nitric oxide synthase- 20.9 45 0.00097 29.4 0.8 16 580-595 30-45 (78)
268 PF02845 CUE: CUE domain; Int 20.4 1.6E+02 0.0035 22.6 3.8 25 121-145 14-38 (42)
269 COG1239 ChlI Mg-chelatase subu 20.1 2.9E+02 0.0063 32.0 7.2 101 43-148 144-263 (423)
No 1
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=99.96 E-value=3.2e-29 Score=291.40 Aligned_cols=453 Identities=18% Similarity=0.144 Sum_probs=328.4
Q ss_pred hhhHHHhhCCCcEEEEeCCCcccc------------cccccccC--------CCCCCcEEEEeCCCCCChhhHHHHHHHH
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDEN------------SHGVMGKS--------DNHVKPLILIEDVDVFFPEDRGFIAGIQ 67 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~r------------n~~v~gsl--------~~~kkkLILIDEVD~LfeeDrGf~~AL~ 67 (712)
-+.++|+++||+|+|.||+|.|+. ++.+.+.. ......||||||||+||.+|||+|++|.
T Consensus 373 ~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg~v~~l~ 452 (871)
T KOG1968|consen 373 AAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRGGVSKLS 452 (871)
T ss_pred hHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccchhhhhHHHHH
Confidence 456899999999999999998853 24443333 0123569999999999999999999999
Q ss_pred HHHHhcCCcEEEEecCCCCCCcccccc--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHH
Q 005137 68 QIAEKAKGPVILTSNSNNITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHL 145 (712)
Q Consensus 68 ~LiekTKrPIILTCND~n~~Lpkllsr--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~L 145 (712)
.+|+++++||||||||++.+..+.+.+ +.|+|++|....+..||+.||.+|+++|+++.++.+++.++||||++||+|
T Consensus 453 ~l~~ks~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~~~DiR~~i~~l 532 (871)
T KOG1968|consen 453 SLCKKSSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLSGGDIRQIIMQL 532 (871)
T ss_pred HHHHhccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhcccCHHHHHHHH
Confidence 999999999999999999888888888 899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCC-------CCcccccccccCCCCCCcccccccCCCccCCCCCCch------hHHHHHHHHhhhhhhhcccccc
Q 005137 146 QFWCQNKG-------YGKDKKLQKLYVPELFDPDAGHHMLPKKIPWGFPSQL------SELVVKEIMKSLSLMEENSTLR 212 (712)
Q Consensus 146 Qf~s~s~~-------~~~~k~~~k~~~~~pfD~i~g~~l~p~i~p~~fp~~L------~eL~~~ei~~si~~~een~~~~ 212 (712)
|||+.... ...-+.|.+....++|| ++...+.+.- .+.+. .++++.++
T Consensus 533 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~L~~~~----~~s~~~~~~~k~~~~~ed~-------------- 593 (871)
T KOG1968|consen 533 QFWSLSKPAELPKKKGTPIKTSKKNITVKDFD-AAEGLLDISR----VASEETSNQSKAELYFEDY-------------- 593 (871)
T ss_pred hhhhccchhhhccccCccccccccccccchhH-HHhhhccHhh----hhhhhhhccchHHHhcccc--------------
Confidence 99977632 23334467888888888 5544444110 11111 33333333
Q ss_pred ccccccCCCCCCCCCCCCCCCCcchHHHHHHhhccCCccCCCccccccccCccccCCCCCCCccccccccccccceecCC
Q 005137 213 ELSEGEGHDEMPSNQDMHNNPADSVEAKKEEMLNMNSSVHTNNELEDPLGNECEISNLPHTPVSFSRKNNRRKFKVVASS 292 (712)
Q Consensus 213 e~~e~l~~~~~~n~l~~~~~~~d~~~~~k~~ml~~~~s~~~~~e~~~~~~~~~e~~~~~~~p~~~~~~~~r~k~~~v~~s 292 (712)
...++.+++|++....... - .+..++++.+.+.|.++.....|..+.+...+.++.++...
T Consensus 594 ---~~~p~~v~~n~~~~~~~~~----------~------~~~~~l~~~~~~ad~is~~d~~~~~~r~~~~~~~L~~~~a~ 654 (871)
T KOG1968|consen 594 ---SISPLKVQENYLQVLPRSM----------K------QILDELEDVSEAADSISLGDLRPKSIRGPELDWKLNPLHAV 654 (871)
T ss_pred ---ccchhhcchhhhcccchhh----------h------hhHHHHHHHhhhhhhhhhhhhcchhhcCccchhhhhhhhhh
Confidence 3344445555543332221 1 46678888888888899999999999999998999999888
Q ss_pred CchhhhhhCCCcccccccccccccccCCCCCccccc-ccCCCCCCCcccCCchhhhccccccccccccccceee-eeeee
Q 005137 293 DSEDELIRNKSPVAERDINSKFLSENHSRFPSHFSN-AQNCKNPPIDKLHYPLKEKLEGSHYLCSEVANDLQIG-TYVSV 370 (712)
Q Consensus 293 ~s~d~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~q~~~~~~~~~~~~s~~~~~e~~~~~~~~~~~~~~i~-t~~s~ 370 (712)
+|.++++. .+.+|... .-.||. |.. +-.|. .... .+. --.+.
T Consensus 655 ~s~~~p~~---~~~~~~~~-------~i~f~~-~~~~~sk~~----------~~~~---------------~l~el~~h~ 698 (871)
T KOG1968|consen 655 DSKVLPAS---KVGGHLLF-------RLGFPQ-WLGENSKSG----------KLKR---------------FLQELLPHT 698 (871)
T ss_pred hhhhcchh---hhhhcccc-------cccccc-ccCcccccc----------chhH---------------HHHHhchhh
Confidence 88887766 45555422 222333 322 22222 1111 112 33455
Q ss_pred ccccccCCcccccccccCCcccccccccccccccceeeeeecccccCCCCcccCcchhhccCCCChhhHHHHHHHhccCC
Q 005137 371 DISCVPESSFVPETDIDNGAELLSGKECSGCVAEAVEVSVANEFDLNLPPVGADNNSMLEMHRNPDMLEKFCAVIAESSH 450 (712)
Q Consensus 371 ~~scvpess~v~et~~~~~~e~~~~~vs~g~~~~~~~vs~~n~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~i~~~s~ 450 (712)
.+.+.|...++++.-..-..++.......++..+ .+++.. .+.......|-+..+-|.|+....
T Consensus 699 ~~~~s~~~~~~~~~y~~i~~~~~~~~~~~~~~d~-------------~p~~i~---~~vdy~~~~ed~~~i~Ei~~~~~~ 762 (871)
T KOG1968|consen 699 RLKQSANKARVRESYNPISRQFSPVPLALQSKDG-------------KPSAIE---SMVDYDLINEDLDGISEIIAAPGE 762 (871)
T ss_pred hhhhccchhhhhhhhhhhhhhccCCccccccCCC-------------CchhHH---hhhhhhhhhhhhhhHHHHhhcccc
Confidence 6788999999999999888899888888888742 122111 123335666777788888888777
Q ss_pred chhhcccccchhcccccccccccccccccccccchh-hccchhHHHHHHHHHHHHHhccccccccchhhcCCChhhHHHh
Q 005137 451 MEEVEDSQNEHVETIPRVYQLMDECSRMDFKRRSKL-EELRSQEAIDLVRESWKKLRDGNTDLRQYATLEKPNAFQIIKL 529 (712)
Q Consensus 451 ~~~~~d~~~e~~~~~~~~~~~mDecSr~df~~~~~~-~~~~~~~~~~~Vq~~W~klr~~~~dl~~~~~~e~~~a~~~~~l 529 (712)
..+..+.. +......-+.++-++|.++.|....+- .+.....-...++..|.+...-.++.. ..++-+.+...+++
T Consensus 763 ~~~~~~~i-~~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~~l~~ 839 (871)
T KOG1968|consen 763 AKVPNKKI-EGTVKAVFTRTYKKLTEELRFFGQCKIRWKNAELSSAKREDLELGKGAEHLSLSG--DSSEELEADHNLSL 839 (871)
T ss_pred ccchhhhh-ccccccccccchhhhHhhccccchheeeccCccccccccchhhcccchhhccccc--cchhhhhhhhhcch
Confidence 66666655 665566666677799999999999988 444444677888999999997655555 34566799999999
Q ss_pred hhccccccchhhhhhhhcCCCCCCCCC
Q 005137 530 THGMCDLISEADLLLSKCQSPDFLELP 556 (712)
Q Consensus 530 a~~~snlISEadl~~~~c~~~d~~~~~ 556 (712)
++.+...++. .+.+|-+.-...+.
T Consensus 840 ~~~i~~~~~~---t~~k~~~~~~k~~~ 863 (871)
T KOG1968|consen 840 DKLIKVELTT---TKRKALNHWSKGTE 863 (871)
T ss_pred hheeeecccc---ccccccccCCCCcc
Confidence 9999999988 66666655444433
No 2
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.88 E-value=1.5e-22 Score=228.82 Aligned_cols=144 Identities=22% Similarity=0.208 Sum_probs=122.7
Q ss_pred hhhHHHhhCCCcEEEEeCCCcccc--------cccccccCC--CCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh-----
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDEN--------SHGVMGKSD--NHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK----- 72 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~r--------n~~v~gsl~--~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek----- 72 (712)
.+-+||++.||.|+|+||||+|.- +...+.++. +.++.|+|+||+||-. ++++.+|..+++.
T Consensus 342 LAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~---~~~Vdvilslv~a~~k~~ 418 (877)
T KOG1969|consen 342 LAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP---RAAVDVILSLVKATNKQA 418 (877)
T ss_pred HHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCc---HHHHHHHHHHHHhhcchh
Confidence 577899999999999999999952 122222222 3678999999999985 8899999999882
Q ss_pred ------------------cCCcEEEEecCCCC-CCcccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005137 73 ------------------AKGPVILTSNSNNI-TLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIE 132 (712)
Q Consensus 73 ------------------TKrPIILTCND~n~-~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~ 132 (712)
..|||||||||.+. .+.++++. ..|.|.+|+...++.||+.||.+||+.++..+|.+|++
T Consensus 419 ~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~e 498 (877)
T KOG1969|consen 419 TGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMRADSKALNALCE 498 (877)
T ss_pred hcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHH
Confidence 25899999999874 45555555 78999999999999999999999999999999999999
Q ss_pred HcCCcHHHHHHHHHHHhhcCCC
Q 005137 133 SCRADIRKTIMHLQFWCQNKGY 154 (712)
Q Consensus 133 ~S~GDIRqaLN~LQf~s~s~~~ 154 (712)
.+++|||.|||+|||.+....-
T Consensus 499 l~~~DIRsCINtLQfLa~~~~r 520 (877)
T KOG1969|consen 499 LTQNDIRSCINTLQFLASNVDR 520 (877)
T ss_pred HhcchHHHHHHHHHHHHHhccc
Confidence 9999999999999999987754
No 3
>PRK04195 replication factor C large subunit; Provisional
Probab=99.77 E-value=2.6e-18 Score=189.65 Aligned_cols=146 Identities=26% Similarity=0.325 Sum_probs=123.8
Q ss_pred hhhHHHhhCCCcEEEEeCCCcccc--------cccccccCCCCCCcEEEEeCCCCCCh-hhHHHHHHHHHHHHhcCCcEE
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDEN--------SHGVMGKSDNHVKPLILIEDVDVFFP-EDRGFIAGIQQIAEKAKGPVI 78 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~r--------n~~v~gsl~~~kkkLILIDEVD~Lfe-eDrGf~~AL~~LiekTKrPII 78 (712)
.+.++|+++|++++|+||||.|.. .......+++.+++||||||||+|+. +|+|++.+|.++++.+++|||
T Consensus 55 la~ala~el~~~~ielnasd~r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iI 134 (482)
T PRK04195 55 LAHALANDYGWEVIELNASDQRTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPII 134 (482)
T ss_pred HHHHHHHHcCCCEEEEcccccccHHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCCCEE
Confidence 467899999999999999997642 11112233334678999999999986 588999999999999999999
Q ss_pred EEecCCCCCCc-ccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC
Q 005137 79 LTSNSNNITLP-DSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNKG 153 (712)
Q Consensus 79 LTCND~n~~Lp-kllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~s~~ 153 (712)
||||+.....+ .++++ ..|+|++|+..++..+|..||..||+.+++++++.|++.++||+|++||.||+++.+.+
T Consensus 135 li~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~ 211 (482)
T PRK04195 135 LTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAEGYG 211 (482)
T ss_pred EeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCC
Confidence 99999875444 34455 78999999999999999999999999999999999999999999999999999776544
No 4
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.77 E-value=4.5e-19 Score=181.25 Aligned_cols=137 Identities=15% Similarity=0.168 Sum_probs=114.8
Q ss_pred cEEEEeCCCcccc----c---ccc--cccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhcCCcEEEEecCCCCCCc
Q 005137 19 EVVEVIHIPDDEN----S---HGV--MGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSNNITLP 89 (712)
Q Consensus 19 dVIELNASDdR~r----n---~~v--~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekTKrPIILTCND~n~~Lp 89 (712)
.|+|+||||+|+- + .+. +-++...++|+||+||+|.|+++.+++++...++..++. +++|+||-.++.+.
T Consensus 80 ~vLELNASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~tt-RFalaCN~s~KIiE 158 (333)
T KOG0991|consen 80 AVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTT-RFALACNQSEKIIE 158 (333)
T ss_pred HhhhccCccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccc-hhhhhhcchhhhhh
Confidence 4999999999853 2 221 224445689999999999999986666666666655554 59999999988766
Q ss_pred ccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCCc
Q 005137 90 DSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNKGYGK 156 (712)
Q Consensus 90 kllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~s~~~~~ 156 (712)
++-+| ..+||.+.+..++..||..|++.|+++++++.|++|+..++||+||+||+||.-..+.+.-+
T Consensus 159 PIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g~g~Vn 226 (333)
T KOG0991|consen 159 PIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNGFGLVN 226 (333)
T ss_pred hHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHhccccccc
Confidence 66677 88999999999999999999999999999999999999999999999999999988887644
No 5
>PRK04132 replication factor C small subunit; Provisional
Probab=99.70 E-value=9.4e-17 Score=187.69 Aligned_cols=142 Identities=15% Similarity=0.171 Sum_probs=120.1
Q ss_pred hhhHHHhhC-----CCcEEEEeCCCccccc-------c-cccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--
Q 005137 8 SLCEAAQHA-----DDEVVEVIHIPDDENS-------H-GVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK-- 72 (712)
Q Consensus 8 ~~~aIAkel-----GydVIELNASDdR~rn-------~-~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek-- 72 (712)
.+.++|+++ +++++|+||||+|+.. . .....+.+.+.+||||||||.|+.+ ++.||.++++.
T Consensus 582 ~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~---AQnALLk~lEep~ 658 (846)
T PRK04132 582 AALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQD---AQQALRRTMEMFS 658 (846)
T ss_pred HHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHH---HHHHHHHHhhCCC
Confidence 356789987 5689999999977420 1 1112222335689999999999864 67899999995
Q ss_pred cCCcEEEEecCCCCCCcccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 005137 73 AKGPVILTSNSNNITLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQN 151 (712)
Q Consensus 73 TKrPIILTCND~n~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~s 151 (712)
.+++|||+||+....++.+++| ..++|++|+.+++..+|..||.+||+.++++.+..|+..++||+|++||.||.++..
T Consensus 659 ~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~GDlR~AIn~Lq~~~~~ 738 (846)
T PRK04132 659 SNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAAL 738 (846)
T ss_pred CCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 6889999999998877788888 889999999999999999999999999999999999999999999999999998865
Q ss_pred C
Q 005137 152 K 152 (712)
Q Consensus 152 ~ 152 (712)
.
T Consensus 739 ~ 739 (846)
T PRK04132 739 D 739 (846)
T ss_pred c
Confidence 4
No 6
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.70 E-value=5.6e-17 Score=170.69 Aligned_cols=136 Identities=17% Similarity=0.192 Sum_probs=112.4
Q ss_pred CcEEEEeCCCccccc-------cc--cc----ccCC--CCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh-c-CCcEEEE
Q 005137 18 DEVVEVIHIPDDENS-------HG--VM----GKSD--NHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK-A-KGPVILT 80 (712)
Q Consensus 18 ydVIELNASDdR~rn-------~~--v~----gsl~--~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek-T-KrPIILT 80 (712)
-.|+|+||||+|+++ .+ .. +... -...|+|||||+|.|+.+ .|+||++.++. + +..||||
T Consensus 89 ~rvl~lnaSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd---aq~aLrr~mE~~s~~trFiLI 165 (346)
T KOG0989|consen 89 CRVLELNASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD---AQAALRRTMEDFSRTTRFILI 165 (346)
T ss_pred cchhhhcccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHH---HHHHHHHHHhccccceEEEEE
Confidence 359999999998652 00 00 0110 124599999999999876 78899999987 2 3469999
Q ss_pred ecCCCCCCcccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCCc
Q 005137 81 SNSNNITLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNKGYGK 156 (712)
Q Consensus 81 CND~n~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~s~~~~~ 156 (712)
||.....+.++.+| ..++|++...+.+..||+.||.+||+++++++++.|+..++||+|+++++||-.+..++..+
T Consensus 166 cnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls~~gk~It 242 (346)
T KOG0989|consen 166 CNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLSLLGKRIT 242 (346)
T ss_pred cCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhhccCcccc
Confidence 99998866667788 78999999999999999999999999999999999999999999999999999998665444
No 7
>PLN03025 replication factor C subunit; Provisional
Probab=99.62 E-value=2e-15 Score=158.12 Aligned_cols=142 Identities=17% Similarity=0.182 Sum_probs=112.4
Q ss_pred hhhHHHhhC-----CCcEEEEeCCCccccc-------ccccc--cCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh-
Q 005137 8 SLCEAAQHA-----DDEVVEVIHIPDDENS-------HGVMG--KSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK- 72 (712)
Q Consensus 8 ~~~aIAkel-----GydVIELNASDdR~rn-------~~v~g--sl~~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek- 72 (712)
.+.++|+++ ...++|+||||.|+.. ..... .....+.++|||||||.|+... ..+|.++++.
T Consensus 50 la~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~a---q~aL~~~lE~~ 126 (319)
T PLN03025 50 SILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGA---QQALRRTMEIY 126 (319)
T ss_pred HHHHHHHHHhcccCccceeeecccccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHH---HHHHHHHHhcc
Confidence 345667775 3469999999977431 10111 1122357899999999998764 4566676765
Q ss_pred -cCCcEEEEecCCCCCCcccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 005137 73 -AKGPVILTSNSNNITLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (712)
Q Consensus 73 -TKrPIILTCND~n~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~ 150 (712)
..+.+||+||..+..++.+++| ..++|++|+.+++..+|..||.+||+.+++++++.|+..++||+|+++|.||.++.
T Consensus 127 ~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~~ 206 (319)
T PLN03025 127 SNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHS 206 (319)
T ss_pred cCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 3356999999988767777788 78999999999999999999999999999999999999999999999999998776
Q ss_pred cC
Q 005137 151 NK 152 (712)
Q Consensus 151 s~ 152 (712)
+.
T Consensus 207 ~~ 208 (319)
T PLN03025 207 GF 208 (319)
T ss_pred cC
Confidence 53
No 8
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=7.8e-13 Score=153.14 Aligned_cols=132 Identities=15% Similarity=0.199 Sum_probs=108.6
Q ss_pred CcEEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCcEEEEecCCCCCC
Q 005137 18 DEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNNITL 88 (712)
Q Consensus 18 ydVIELNASDdR~r-------n~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrPIILTCND~n~~L 88 (712)
.+++|+|+++.|+. ....... ...+.|||||||||.|+.. .+.+|.++++.. ++.|||+||+.++.+
T Consensus 88 ~DviEIDAas~rgVDdIReLIe~a~~~P-~~gr~KVIIIDEah~LT~~---A~NALLKtLEEPP~~v~FILaTtd~~KIp 163 (830)
T PRK07003 88 VDYVEMDAASNRGVDEMAALLERAVYAP-VDARFKVYMIDEVHMLTNH---AFNAMLKTLEEPPPHVKFILATTDPQKIP 163 (830)
T ss_pred ceEEEecccccccHHHHHHHHHHHHhcc-ccCCceEEEEeChhhCCHH---HHHHHHHHHHhcCCCeEEEEEECChhhcc
Confidence 37999999886532 0111111 2236799999999999764 578899999884 678999999998877
Q ss_pred cccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHH-HHHhhcCC
Q 005137 89 PDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHL-QFWCQNKG 153 (712)
Q Consensus 89 pkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~L-Qf~s~s~~ 153 (712)
+.+++| ..|+|++++.++|..+|+.||.+||+.++++.+..|++.++||+|.+||.| |.+..+++
T Consensus 164 ~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQAia~~~~ 230 (830)
T PRK07003 164 VTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSAN 230 (830)
T ss_pred chhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence 778899 889999999999999999999999999999999999999999999999985 66665543
No 9
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.43 E-value=9e-13 Score=137.99 Aligned_cols=108 Identities=19% Similarity=0.303 Sum_probs=99.0
Q ss_pred CCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCCCCCcccccc-eeeEEcCCCHHHHHHHHHHHHHHc
Q 005137 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAE 118 (712)
Q Consensus 42 ~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~E 118 (712)
+..||++|.|+|.++.+ +++||++.|++ ..+++|++||..++.++++++| +.|+...|+.++|...|..||++|
T Consensus 126 r~fKvvvi~ead~LT~d---AQ~aLRRTMEkYs~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE 202 (351)
T KOG2035|consen 126 RPFKVVVINEADELTRD---AQHALRRTMEKYSSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKE 202 (351)
T ss_pred cceEEEEEechHhhhHH---HHHHHHHHHHHHhcCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHh
Confidence 45799999999999986 45677777776 4688999999999989989999 899999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC
Q 005137 119 KVELQQHLLVQLIESCRADIRKTIMHLQFWCQNK 152 (712)
Q Consensus 119 GikId~~~L~~LI~~S~GDIRqaLN~LQf~s~s~ 152 (712)
|+.++.+.+..|++.++||+|++|.+|+..+...
T Consensus 203 ~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n 236 (351)
T KOG2035|consen 203 GLQLPKELLKRIAEKSNRNLRRALLMLEAVRVNN 236 (351)
T ss_pred cccCcHHHHHHHHHHhcccHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999998774
No 10
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=4.5e-12 Score=141.30 Aligned_cols=131 Identities=14% Similarity=0.148 Sum_probs=104.9
Q ss_pred CcEEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCCCCC
Q 005137 18 DEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITL 88 (712)
Q Consensus 18 ydVIELNASDdR~r-------n~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n~~L 88 (712)
.+|+|+||++.++. ....... ...+.+|+||||||.|+.+ .+.+|.+.++. ..+-+|++||+....+
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p-~~g~~KV~IIDEah~Ls~~---A~NALLKtLEEPp~~viFILaTte~~kI~ 165 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAP-MGGKYKVYIIDEVHMLTDQ---SFNALLKTLEEPPAHIVFILATTEFHKIP 165 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhh-hcCCCEEEEEechhhcCHH---HHHHHHHHhhcCCCceEEEeecCChhhcc
Confidence 37999999764421 0111111 1236789999999999764 67888888887 4556788899987766
Q ss_pred cccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHH-HHhhcC
Q 005137 89 PDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQ-FWCQNK 152 (712)
Q Consensus 89 pkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQ-f~s~s~ 152 (712)
+.+++| ..++|++++..++..+|..||..||+.++++++..|++.++||+|.+||.|+ .+....
T Consensus 166 ~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~~ 231 (484)
T PRK14956 166 ETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTD 231 (484)
T ss_pred HHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHhCC
Confidence 778888 7899999999999999999999999999999999999999999999999995 454433
No 11
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=5.1e-12 Score=144.95 Aligned_cols=131 Identities=13% Similarity=0.174 Sum_probs=105.3
Q ss_pred CcEEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCCCCC
Q 005137 18 DEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITL 88 (712)
Q Consensus 18 ydVIELNASDdR~r-------n~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n~~L 88 (712)
.+|+|+||++.+.. ....... ...+.+++||||||.|+.+ ...+|.++++. ...+|||+||+.....
T Consensus 87 pDviEIDAAs~~~VddIReli~~~~y~P-~~gk~KV~IIDEVh~LS~~---A~NALLKtLEEPP~~v~FILaTtd~~kIp 162 (702)
T PRK14960 87 IDLIEIDAASRTKVEDTRELLDNVPYAP-TQGRFKVYLIDEVHMLSTH---SFNALLKTLEEPPEHVKFLFATTDPQKLP 162 (702)
T ss_pred CceEEecccccCCHHHHHHHHHHHhhhh-hcCCcEEEEEechHhcCHH---HHHHHHHHHhcCCCCcEEEEEECChHhhh
Confidence 48999999875421 0000111 1236789999999999764 56789999987 4567999999987655
Q ss_pred cccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHH-HHHhhcC
Q 005137 89 PDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHL-QFWCQNK 152 (712)
Q Consensus 89 pkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~L-Qf~s~s~ 152 (712)
+.+++| ..++|++++..++..+|..||.+||+.++++++..|+..++||+|.++|.| |.++.++
T Consensus 163 ~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQaIayg~ 228 (702)
T PRK14960 163 ITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQ 228 (702)
T ss_pred HHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 667788 889999999999999999999999999999999999999999999999998 5555443
No 12
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.31 E-value=1.6e-12 Score=137.94 Aligned_cols=150 Identities=15% Similarity=0.088 Sum_probs=119.9
Q ss_pred CcEEEEeCCCcccc------c---ccccc-cCCCC--CCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCcEEEEecC
Q 005137 18 DEVVEVIHIPDDEN------S---HGVMG-KSDNH--VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNS 83 (712)
Q Consensus 18 ydVIELNASDdR~r------n---~~v~g-sl~~~--kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrPIILTCND 83 (712)
+.|+|+||||+|+. . ++..+ ..++. ..|+||+||+|.|+.. ++.||++.+++. +..|+++||.
T Consensus 94 ~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~---AQnALRRviek~t~n~rF~ii~n~ 170 (360)
T KOG0990|consen 94 SMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRD---AQNALRRVIEKYTANTRFATISNP 170 (360)
T ss_pred hHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHH---HHHHHHHHHHHhccceEEEEeccC
Confidence 34999999998864 1 11111 12222 5799999999999876 445666666653 4569999999
Q ss_pred CCCCCcccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCCcc-----
Q 005137 84 NNITLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNKGYGKD----- 157 (712)
Q Consensus 84 ~n~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~s~~~~~~----- 157 (712)
++...|...+| ..++|.+.+..++..++..||..|.++++++...+++..+.||+|+++|.||......+..++
T Consensus 171 ~~ki~pa~qsRctrfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lqs~~~~~~~~~e~~~~~ 250 (360)
T KOG0990|consen 171 PQKIHPAQQSRCTRFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALNYLQSILKKVMERKELNNPN 250 (360)
T ss_pred hhhcCchhhcccccCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCCCCch
Confidence 99888888888 789999999999999999999999999999999999999999999999999988876653332
Q ss_pred -cccccccCCCCCC
Q 005137 158 -KKLQKLYVPELFD 170 (712)
Q Consensus 158 -k~~~k~~~~~pfD 170 (712)
+..++...+.|+|
T Consensus 251 ~~vy~c~g~p~~~d 264 (360)
T KOG0990|consen 251 DLVYQCKGAPQPSD 264 (360)
T ss_pred hhHHHhcCCCChhH
Confidence 2367777788887
No 13
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.26 E-value=6.2e-11 Score=133.50 Aligned_cols=110 Identities=27% Similarity=0.473 Sum_probs=89.3
Q ss_pred CCCcEEEEeCCCCCChhhH-HHHHHHHHHHHhcCC-cEEEEecCCC------C----------CCcc-cccc---eeeEE
Q 005137 42 HVKPLILIEDVDVFFPEDR-GFIAGIQQIAEKAKG-PVILTSNSNN------I----------TLPD-SLDR---LEVSF 99 (712)
Q Consensus 42 ~kkkLILIDEVD~LfeeDr-Gf~~AL~~LiekTKr-PIILTCND~n------~----------~Lpk-llsr---l~IrF 99 (712)
.+++|||+||...++..+. .|..+|.+++..+++ |+|+|..|.. . .+++ ++.+ ..|.|
T Consensus 131 ~~~kvILVEDlPN~~~~~~~~f~~~L~~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~F 210 (519)
T PF03215_consen 131 SNKKVILVEDLPNVFHRDTSRFREALRQYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKF 210 (519)
T ss_pred CCceEEEeeccccccchhHHHHHHHHHHHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEe
Confidence 3579999999999987754 688899999999998 9999998421 0 1222 1222 67999
Q ss_pred cCCCHHHHHHHHHHHHHHc-----CC-CCC--HHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 005137 100 TMPMPKDLLSHLQMICAAE-----KV-ELQ--QHLLVQLIESCRADIRKTIMHLQFWCQN 151 (712)
Q Consensus 100 krPs~~eI~srL~~Ic~~E-----Gi-kId--~~~L~~LI~~S~GDIRqaLN~LQf~s~s 151 (712)
++.++.-|++.|..||..| |. ..+ ..+|+.|+..++||||.|||.|||||..
T Consensus 211 NpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~~ 270 (519)
T PF03215_consen 211 NPIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAESSNGDIRSAINNLQFWCLK 270 (519)
T ss_pred cCCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHHhcCchHHHHHHHHHHHhcC
Confidence 9999999999999999999 33 343 3469999999999999999999999983
No 14
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=1.7e-11 Score=140.56 Aligned_cols=133 Identities=15% Similarity=0.187 Sum_probs=107.0
Q ss_pred CcEEEEeCCCcccc------cccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCCCCCc
Q 005137 18 DEVVEVIHIPDDEN------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLP 89 (712)
Q Consensus 18 ydVIELNASDdR~r------n~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n~~Lp 89 (712)
.+++|+|+++.++. ...+.-.-...+.+||||||||.|+.. ...+|.++++. .++.|||+||+....++
T Consensus 93 pDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~---AaNALLKTLEEPP~~v~FILaTtep~kLlp 169 (700)
T PRK12323 93 VDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNH---AFNAMLKTLEEPPEHVKFILATTDPQKIPV 169 (700)
T ss_pred CcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHH---HHHHHHHhhccCCCCceEEEEeCChHhhhh
Confidence 47999999875421 011100112236799999999999875 45788888887 45779999999988777
Q ss_pred ccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHH-HHHhhcCC
Q 005137 90 DSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHL-QFWCQNKG 153 (712)
Q Consensus 90 kllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~L-Qf~s~s~~ 153 (712)
.+++| ..++|++++.+++..+|..||..||+.++++.++.|+..++||+|.+|+.| |.+..+++
T Consensus 170 TIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQaia~~~~ 235 (700)
T PRK12323 170 TVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIAYSAG 235 (700)
T ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence 88899 889999999999999999999999999999999999999999999999987 45554443
No 15
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=2.4e-11 Score=136.45 Aligned_cols=132 Identities=17% Similarity=0.219 Sum_probs=105.1
Q ss_pred cEEEEeCCCcccc----c--ccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCCCCCcc
Q 005137 19 EVVEVIHIPDDEN----S--HGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLPD 90 (712)
Q Consensus 19 dVIELNASDdR~r----n--~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n~~Lpk 90 (712)
+|+|+||++.++. . ..+.-.....+.+++||||||.|+.. ...+|.++++. ..+.|||+|||....++.
T Consensus 89 d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~---a~naLLk~LEepp~~~~fIlattd~~kl~~t 165 (509)
T PRK14958 89 DLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH---SFNALLKTLEEPPSHVKFILATTDHHKLPVT 165 (509)
T ss_pred eEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH---HHHHHHHHHhccCCCeEEEEEECChHhchHH
Confidence 6999999874421 0 00000112236799999999999875 45788888887 367799999998765666
Q ss_pred cccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHH-HHHhhcCC
Q 005137 91 SLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHL-QFWCQNKG 153 (712)
Q Consensus 91 llsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~L-Qf~s~s~~ 153 (712)
+++| ..++|++++..++..+|..|+.+||+.+++++++.|+..++||+|.++|.| |.++.+.+
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq~ia~~~~ 230 (509)
T PRK14958 166 VLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNG 230 (509)
T ss_pred HHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcCCC
Confidence 7788 789999999999999999999999999999999999999999999999999 55554433
No 16
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.24 E-value=5.7e-12 Score=128.95 Aligned_cols=121 Identities=18% Similarity=0.180 Sum_probs=97.9
Q ss_pred CcEEEEeCCCccccc-------ccc-cccCCC--CCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCC
Q 005137 18 DEVVEVIHIPDDENS-------HGV-MGKSDN--HVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNN 85 (712)
Q Consensus 18 ydVIELNASDdR~rn-------~~v-~gsl~~--~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n 85 (712)
.+|+|+||||.+... ... .....+ .+.++|||||+|.|+.+ ..+|+.++++. .+.||||+||+++
T Consensus 74 ~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~---A~nallk~lEep~~~~~~il~~n~~~ 150 (325)
T COG0470 74 PDFLELNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTED---AANALLKTLEEPPKNTRFILITNDPS 150 (325)
T ss_pred CceEEecccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHH---HHHHHHHHhccCCCCeEEEEEcCChh
Confidence 799999999987631 000 011122 46799999999999884 55688888875 5789999999988
Q ss_pred CCCcccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC
Q 005137 86 ITLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNK 152 (712)
Q Consensus 86 ~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~s~ 152 (712)
..++.+++| ..++|++ ..++..||..| ++++..++..+.||+|+++|.||+.....
T Consensus 151 ~il~tI~SRc~~i~f~~------~~~~~~i~~~e-----~~~l~~i~~~~~gd~r~~i~~lq~~~~~~ 207 (325)
T COG0470 151 KILPTIRSRCQRIRFKP------PSRLEAIAWLE-----DQGLEEIAAVAEGDARKAINPLQALAALE 207 (325)
T ss_pred hccchhhhcceeeecCC------chHHHHHHHhh-----ccchhHHHHHHHHHHHcCCCHHHHHHHhc
Confidence 888878888 8899998 66778888888 88999999999999999999999998873
No 17
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.21 E-value=6.6e-11 Score=136.61 Aligned_cols=130 Identities=13% Similarity=0.170 Sum_probs=104.0
Q ss_pred CcEEEEeCCCcccc---cccc----cccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCCCCC
Q 005137 18 DEVVEVIHIPDDEN---SHGV----MGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITL 88 (712)
Q Consensus 18 ydVIELNASDdR~r---n~~v----~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n~~L 88 (712)
.+++|+|+++.++. ...+ ..... .+.+||||||||.|.. +...+|.++++. ..+.|||+||+....+
T Consensus 88 ~DvlEidaAs~~gVd~IRelle~a~~~P~~-gk~KVIIIDEad~Ls~---~A~NALLKtLEEPp~~v~fILaTtd~~kL~ 163 (709)
T PRK08691 88 VDLLEIDAASNTGIDNIREVLENAQYAPTA-GKYKVYIIDEVHMLSK---SAFNAMLKTLEEPPEHVKFILATTDPHKVP 163 (709)
T ss_pred cceEEEeccccCCHHHHHHHHHHHHhhhhh-CCcEEEEEECccccCH---HHHHHHHHHHHhCCCCcEEEEEeCCccccc
Confidence 47899998775432 0011 11112 3578999999999975 356788888886 4567999999988766
Q ss_pred cccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHH-HHhhc
Q 005137 89 PDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQ-FWCQN 151 (712)
Q Consensus 89 pkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQ-f~s~s 151 (712)
+.+++| ..++|++++..++..+|..|+.+||+.+++.++..|++.++||+|.++|.|+ ....+
T Consensus 164 ~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia~g 228 (709)
T PRK08691 164 VTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALG 228 (709)
T ss_pred hHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 777888 7899999999999999999999999999999999999999999999999995 44433
No 18
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.19 E-value=9.4e-11 Score=134.86 Aligned_cols=131 Identities=12% Similarity=0.163 Sum_probs=105.4
Q ss_pred CcEEEEeCCCccc----c---cccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCCCCC
Q 005137 18 DEVVEVIHIPDDE----N---SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITL 88 (712)
Q Consensus 18 ydVIELNASDdR~----r---n~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n~~L 88 (712)
.+++|+||++.++ | ........ .++.+|+||||||.|+.. ...+|.++++. ..+.|||+|++....+
T Consensus 88 ~D~ieidaas~~~VddiR~li~~~~~~p~-~g~~KV~IIDEah~Ls~~---a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 88 VDLIEIDAASRTKVEDTRELLDNVQYAPA-RGRFKVYLIDEVHMLSRH---SFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred CCceeecccccCCHHHHHHHHHHHHhhhh-cCCCEEEEEechHhCCHH---HHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 4799999986332 1 01111111 236799999999999874 56789999998 4567999999988766
Q ss_pred cccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHH-HHhhcC
Q 005137 89 PDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQ-FWCQNK 152 (712)
Q Consensus 89 pkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQ-f~s~s~ 152 (712)
+.+++| ..++|++++.+++..+|..|+..||+.+++..+..|+..++||+|.+++.|+ .+..++
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~lldqaia~~~ 229 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIASGN 229 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 677888 8899999999999999999999999999999999999999999999999995 444433
No 19
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.18 E-value=1.7e-10 Score=130.44 Aligned_cols=130 Identities=18% Similarity=0.178 Sum_probs=104.9
Q ss_pred CCCcEEEEeCCCcccc----c---ccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCCC
Q 005137 16 ADDEVVEVIHIPDDEN----S---HGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNI 86 (712)
Q Consensus 16 lGydVIELNASDdR~r----n---~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n~ 86 (712)
.+++++|+||++.++. . ....... ..+.+|+||||||.|+.+ ...+|.++++. ..+.+||+|+++..
T Consensus 84 ~h~dv~eldaas~~gId~IRelie~~~~~P~-~~~~KVvIIDEad~Lt~~---A~NALLK~LEEpp~~t~FIL~ttd~~k 159 (535)
T PRK08451 84 RHIDIIEMDAASNRGIDDIRELIEQTKYKPS-MARFKIFIIDEVHMLTKE---AFNALLKTLEEPPSYVKFILATTDPLK 159 (535)
T ss_pred CCCeEEEeccccccCHHHHHHHHHHHhhCcc-cCCeEEEEEECcccCCHH---HHHHHHHHHhhcCCceEEEEEECChhh
Confidence 4578999999875532 0 1000111 235799999999999764 56788888887 34569999999866
Q ss_pred CCcccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 005137 87 TLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWC 149 (712)
Q Consensus 87 ~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s 149 (712)
.++.+++| ..++|++++..++..+|..||.+||+.++++++..|+..++||+|.++|.|+-..
T Consensus 160 L~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnlLdqai 223 (535)
T PRK08451 160 LPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAI 223 (535)
T ss_pred CchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 55667788 8899999999999999999999999999999999999999999999999996433
No 20
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=1.1e-10 Score=130.74 Aligned_cols=134 Identities=13% Similarity=0.167 Sum_probs=106.4
Q ss_pred HhhCCCcEEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecC
Q 005137 13 AQHADDEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNS 83 (712)
Q Consensus 13 AkelGydVIELNASDdR~r-------n~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND 83 (712)
++....+|+|+||++.++. .......++ .+.+++||||||.|+.+ ...+|.++++. ...-+||+|++
T Consensus 80 ~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~-~~~KVvIIDEah~Ls~~---A~NaLLK~LEePp~~v~fIlatte 155 (491)
T PRK14964 80 KNSNHPDVIEIDAASNTSVDDIKVILENSCYLPIS-SKFKVYIIDEVHMLSNS---AFNALLKTLEEPAPHVKFILATTE 155 (491)
T ss_pred hccCCCCEEEEecccCCCHHHHHHHHHHHHhcccc-CCceEEEEeChHhCCHH---HHHHHHHHHhCCCCCeEEEEEeCC
Confidence 3445789999999875432 011111222 36899999999999874 45788888886 33459999998
Q ss_pred CCCCCcccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 005137 84 NNITLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (712)
Q Consensus 84 ~n~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~ 150 (712)
..+..+.+++| ..+.|++++..++..+|..|+.+||+.+++++++.|++.++||+|.+++.|+-...
T Consensus 156 ~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~alslLdqli~ 223 (491)
T PRK14964 156 VKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAI 223 (491)
T ss_pred hHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 77644556777 88999999999999999999999999999999999999999999999999966554
No 21
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.17 E-value=1.3e-10 Score=133.45 Aligned_cols=111 Identities=23% Similarity=0.326 Sum_probs=89.0
Q ss_pred CCCcEEEEeCCCCCChhhHHHHHHHHH--HHHhcCCcEEEEecCCCC--------CC-------cccccc---eeeEEcC
Q 005137 42 HVKPLILIEDVDVFFPEDRGFIAGIQQ--IAEKAKGPVILTSNSNNI--------TL-------PDSLDR---LEVSFTM 101 (712)
Q Consensus 42 ~kkkLILIDEVD~LfeeDrGf~~AL~~--LiekTKrPIILTCND~n~--------~L-------pkllsr---l~IrFkr 101 (712)
.+++|||+||+|.++..+..++..+.. +++.++.|||+|+|+... .+ +.++++ ..|.|++
T Consensus 194 ~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnP 273 (637)
T TIGR00602 194 TDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNP 273 (637)
T ss_pred CceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCC
Confidence 357899999999999876555555544 667788999999996311 01 234432 5799999
Q ss_pred CCHHHHHHHHHHHHHHcCCC------C-CHHHHHHHHHHcCCcHHHHHHHHHHHhhcC
Q 005137 102 PMPKDLLSHLQMICAAEKVE------L-QQHLLVQLIESCRADIRKTIMHLQFWCQNK 152 (712)
Q Consensus 102 Ps~~eI~srL~~Ic~~EGik------I-d~~~L~~LI~~S~GDIRqaLN~LQf~s~s~ 152 (712)
.++..|.++|..||..|+.. + ++++++.|+..++||||+|||.||||+..+
T Consensus 274 ia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GDiRsAIn~LQf~~~~~ 331 (637)
T TIGR00602 274 IAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGDIRSAINSLQFSSSKS 331 (637)
T ss_pred CCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCChHHHHHHHHHHHHhcC
Confidence 99999999999999998653 2 468999999999999999999999999865
No 22
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.17 E-value=2.6e-10 Score=118.20 Aligned_cols=140 Identities=20% Similarity=0.200 Sum_probs=107.3
Q ss_pred hhHHHhhCCCcEEEEeCCCcccc---c---ccc-cccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEE
Q 005137 9 LCEAAQHADDEVVEVIHIPDDEN---S---HGV-MGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVIL 79 (712)
Q Consensus 9 ~~aIAkelGydVIELNASDdR~r---n---~~v-~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIIL 79 (712)
+.++|++.|.+++++|+++.+.. . .+. ...+. ..+++|||||||.+...+ ...+|..+++. .+++||+
T Consensus 60 a~~l~~~~~~~~~~i~~~~~~~~~i~~~l~~~~~~~~~~-~~~~vliiDe~d~l~~~~--~~~~L~~~le~~~~~~~~Il 136 (316)
T PHA02544 60 AKALCNEVGAEVLFVNGSDCRIDFVRNRLTRFASTVSLT-GGGKVIIIDEFDRLGLAD--AQRHLRSFMEAYSKNCSFII 136 (316)
T ss_pred HHHHHHHhCccceEeccCcccHHHHHHHHHHHHHhhccc-CCCeEEEEECcccccCHH--HHHHHHHHHHhcCCCceEEE
Confidence 56788899999999999983310 0 000 01111 246899999999993322 45677777775 5679999
Q ss_pred EecCCCCCCcccccc-eeeEEcCCCHHHHH-------HHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 005137 80 TSNSNNITLPDSLDR-LEVSFTMPMPKDLL-------SHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQN 151 (712)
Q Consensus 80 TCND~n~~Lpkllsr-l~IrFkrPs~~eI~-------srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~s 151 (712)
+||......+.+++| ..+.|..|+..+.. .++..++.+||+.++++++..|+..+.+|+|++++.||.++..
T Consensus 137 t~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r~~l~~l~~~~~~ 216 (316)
T PHA02544 137 TANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINELQRYAST 216 (316)
T ss_pred EcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHcc
Confidence 999987666667778 78999999987654 5667788999999999999999999999999999999988753
No 23
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=1.5e-10 Score=132.62 Aligned_cols=131 Identities=17% Similarity=0.201 Sum_probs=104.1
Q ss_pred CcEEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCcEEEEecCCCCCC
Q 005137 18 DEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNNITL 88 (712)
Q Consensus 18 ydVIELNASDdR~r-------n~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrPIILTCND~n~~L 88 (712)
.+++|+||++.++. ........ ..+.+|+||||||.|+.+ ...+|.++++.. .+-|||+|+|+...+
T Consensus 93 ~D~~eldaas~~~Vd~iReli~~~~~~p~-~g~~KV~IIDEvh~Ls~~---a~NaLLKtLEEPP~~~~fIL~Ttd~~kil 168 (618)
T PRK14951 93 VDYTELDAASNRGVDEVQQLLEQAVYKPV-QGRFKVFMIDEVHMLTNT---AFNAMLKTLEEPPEYLKFVLATTDPQKVP 168 (618)
T ss_pred CceeecCcccccCHHHHHHHHHHHHhCcc-cCCceEEEEEChhhCCHH---HHHHHHHhcccCCCCeEEEEEECCchhhh
Confidence 47999999875431 11111112 236799999999999875 456788887762 345999999987766
Q ss_pred cccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHH-HHHhhcC
Q 005137 89 PDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHL-QFWCQNK 152 (712)
Q Consensus 89 pkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~L-Qf~s~s~ 152 (712)
+.+++| ..++|++++..++..+|+.|+.+||+.++++++..|+..++||+|.++|.| |.++.++
T Consensus 169 ~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~lLdq~ia~~~ 234 (618)
T PRK14951 169 VTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFGS 234 (618)
T ss_pred HHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC
Confidence 677788 889999999999999999999999999999999999999999999999998 4554443
No 24
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=1.9e-10 Score=130.32 Aligned_cols=129 Identities=14% Similarity=0.157 Sum_probs=104.6
Q ss_pred CcEEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCCCCC
Q 005137 18 DEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITL 88 (712)
Q Consensus 18 ydVIELNASDdR~r-------n~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n~~L 88 (712)
.+++|+|+...++. ........ ..+++|+||||||.|+.+ .+.+|.++++. ..+.|||+|++....+
T Consensus 88 ~dlieidaas~~gvd~ir~ii~~~~~~p~-~g~~kViIIDEa~~ls~~---a~naLLK~LEepp~~v~fIL~Ttd~~kil 163 (546)
T PRK14957 88 IDLIEIDAASRTGVEETKEILDNIQYMPS-QGRYKVYLIDEVHMLSKQ---SFNALLKTLEEPPEYVKFILATTDYHKIP 163 (546)
T ss_pred CceEEeecccccCHHHHHHHHHHHHhhhh-cCCcEEEEEechhhccHH---HHHHHHHHHhcCCCCceEEEEECChhhhh
Confidence 48999998553321 01111112 235789999999999764 66789999987 3566999999987766
Q ss_pred cccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 005137 89 PDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (712)
Q Consensus 89 pkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~ 150 (712)
+.+++| ..++|++++..++..+|..|+.+||+.+++.+++.|+..++||+|.++|.|+.+..
T Consensus 164 ~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek~i~ 226 (546)
T PRK14957 164 VTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAIS 226 (546)
T ss_pred hhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 667888 88999999999999999999999999999999999999999999999999986654
No 25
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.16 E-value=4.9e-10 Score=114.96 Aligned_cols=140 Identities=15% Similarity=0.175 Sum_probs=106.7
Q ss_pred hHHHhhC-----CCcEEEEeCCCccccc-------ccc-cccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cC
Q 005137 10 CEAAQHA-----DDEVVEVIHIPDDENS-------HGV-MGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AK 74 (712)
Q Consensus 10 ~aIAkel-----GydVIELNASDdR~rn-------~~v-~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TK 74 (712)
.++|+++ ...++|+|+++.+... ... ...+.+..+++|++||+|.+..+. +.+|.++++. .+
T Consensus 56 ~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~---~~~L~~~le~~~~~ 132 (319)
T PRK00440 56 LALARELYGEDWRENFLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDA---QQALRRTMEMYSQN 132 (319)
T ss_pred HHHHHHHcCCccccceEEeccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHH---HHHHHHHHhcCCCC
Confidence 3455554 3568999998865320 000 111222357899999999997653 4566666663 34
Q ss_pred CcEEEEecCCCCCCcccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC
Q 005137 75 GPVILTSNSNNITLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNK 152 (712)
Q Consensus 75 rPIILTCND~n~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~s~ 152 (712)
+.+|++||.....++.+.++ ..++|.+++..++..+|+.++.++|+.+++++++.|+..++||+|+++|.||.++..+
T Consensus 133 ~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~~l~~~~~~~ 211 (319)
T PRK00440 133 TRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAATG 211 (319)
T ss_pred CeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 67999999876555555566 7799999999999999999999999999999999999999999999999999887653
No 26
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=1.7e-10 Score=135.95 Aligned_cols=125 Identities=13% Similarity=0.175 Sum_probs=102.3
Q ss_pred CcEEEEeCCCccc----c--c-ccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCCCCC
Q 005137 18 DEVVEVIHIPDDE----N--S-HGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITL 88 (712)
Q Consensus 18 ydVIELNASDdR~----r--n-~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n~~L 88 (712)
.+++|+||++.++ | . ...... ...+.+||||||||.|+. +.+.+|.++++. ..+.|||+||+....+
T Consensus 88 ~DviEidAas~~kVDdIReLie~v~~~P-~~gk~KViIIDEAh~LT~---eAqNALLKtLEEPP~~vrFILaTTe~~kLl 163 (944)
T PRK14949 88 VDLIEVDAASRTKVDDTRELLDNVQYRP-SRGRFKVYLIDEVHMLSR---SSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (944)
T ss_pred ceEEEeccccccCHHHHHHHHHHHHhhh-hcCCcEEEEEechHhcCH---HHHHHHHHHHhccCCCeEEEEECCCchhch
Confidence 4689999986332 1 0 111111 123679999999999975 467899999997 4567999999987766
Q ss_pred cccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Q 005137 89 PDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQ 146 (712)
Q Consensus 89 pkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQ 146 (712)
+.+++| ..++|++++..++..+|..|+..||+.++++++..|+..++||+|.++|.|.
T Consensus 164 ~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLLd 222 (944)
T PRK14949 164 VTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTD 222 (944)
T ss_pred HHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 677888 8899999999999999999999999999999999999999999999999984
No 27
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=1.7e-10 Score=129.97 Aligned_cols=127 Identities=17% Similarity=0.223 Sum_probs=102.3
Q ss_pred CcEEEEeCCCccc----c---cccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCCCCC
Q 005137 18 DEVVEVIHIPDDE----N---SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITL 88 (712)
Q Consensus 18 ydVIELNASDdR~----r---n~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n~~L 88 (712)
.+++|++|+..+. | ........ ..+.+|+||||||.|+.+ ...+|.++++. ..+.|||+||+....+
T Consensus 88 ~d~~ei~~~~~~~vd~ir~l~~~~~~~p~-~~~~kVvIIDEad~ls~~---a~naLLK~LEepp~~~~fIL~t~d~~kil 163 (527)
T PRK14969 88 VDLIEVDAASNTQVDAMRELLDNAQYAPT-RGRFKVYIIDEVHMLSKS---AFNAMLKTLEEPPEHVKFILATTDPQKIP 163 (527)
T ss_pred CceeEeeccccCCHHHHHHHHHHHhhCcc-cCCceEEEEcCcccCCHH---HHHHHHHHHhCCCCCEEEEEEeCChhhCc
Confidence 3799999876432 1 01111112 236789999999999864 56788888887 3567999999987656
Q ss_pred cccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHH
Q 005137 89 PDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFW 148 (712)
Q Consensus 89 pkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~ 148 (712)
+.+++| ..++|++++..++..+|..|+.+||+.+++.++..|+..++||+|.++|.|+..
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lldqa 224 (527)
T PRK14969 164 VTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQA 224 (527)
T ss_pred hhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 667788 889999999999999999999999999999999999999999999999999643
No 28
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=2.6e-10 Score=130.13 Aligned_cols=130 Identities=15% Similarity=0.212 Sum_probs=105.9
Q ss_pred CcEEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCCCCC
Q 005137 18 DEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITL 88 (712)
Q Consensus 18 ydVIELNASDdR~r-------n~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n~~L 88 (712)
.+|+|+||+..++. ......... .+++|+||||||.|+.+ ...+|.++++. ..+-+||+|++.+..+
T Consensus 87 ~dvieidaas~~gvd~iRel~~~~~~~P~~-~~~KVvIIDEah~Lt~~---A~NALLK~LEEpp~~~~fIL~tte~~kll 162 (584)
T PRK14952 87 IDVVELDAASHGGVDDTRELRDRAFYAPAQ-SRYRIFIVDEAHMVTTA---GFNALLKIVEEPPEHLIFIFATTEPEKVL 162 (584)
T ss_pred ceEEEeccccccCHHHHHHHHHHHHhhhhc-CCceEEEEECCCcCCHH---HHHHHHHHHhcCCCCeEEEEEeCChHhhH
Confidence 68999999764321 011111112 36789999999999865 67789999997 3455888898887656
Q ss_pred cccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 005137 89 PDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQN 151 (712)
Q Consensus 89 pkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~s 151 (712)
+.+++| ..++|++++..++..+|..||.+||+.++++++..|+..++||+|.++|.|+.....
T Consensus 163 ~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql~~~ 226 (584)
T PRK14952 163 PTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAG 226 (584)
T ss_pred HHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 667788 889999999999999999999999999999999999999999999999999877654
No 29
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=2.4e-10 Score=127.42 Aligned_cols=128 Identities=14% Similarity=0.204 Sum_probs=100.8
Q ss_pred cEEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCCCCCc
Q 005137 19 EVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLP 89 (712)
Q Consensus 19 dVIELNASDdR~r-------n~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n~~Lp 89 (712)
+++|+||+++++. ......... .++++||+||+|.|+.+ .+.+|.+.++. ..+-+|++||++....+
T Consensus 87 dv~el~aa~~~gid~iR~i~~~~~~~p~~-~~~kVvIIDE~h~Lt~~---a~~~LLk~LE~p~~~vv~Ilattn~~kl~~ 162 (472)
T PRK14962 87 DVIELDAASNRGIDEIRKIRDAVGYRPME-GKYKVYIIDEVHMLTKE---AFNALLKTLEEPPSHVVFVLATTNLEKVPP 162 (472)
T ss_pred ccEEEeCcccCCHHHHHHHHHHHhhChhc-CCeEEEEEEChHHhHHH---HHHHHHHHHHhCCCcEEEEEEeCChHhhhH
Confidence 7999999875531 011111122 35789999999999654 45677777776 34557778887655455
Q ss_pred ccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 005137 90 DSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (712)
Q Consensus 90 kllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~ 150 (712)
.+++| ..+.|.+++..++..+|+.++..||+.+++++++.|+..++||+|.++|.|+....
T Consensus 163 ~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~ 224 (472)
T PRK14962 163 TIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWK 224 (472)
T ss_pred HHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 56777 78999999999999999999999999999999999999999999999999997654
No 30
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.12 E-value=5.8e-10 Score=125.30 Aligned_cols=131 Identities=12% Similarity=0.155 Sum_probs=102.7
Q ss_pred CCcEEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCcEEEEecCCCCC
Q 005137 17 DDEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNNIT 87 (712)
Q Consensus 17 GydVIELNASDdR~r-------n~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrPIILTCND~n~~ 87 (712)
..+|+|+|+++.+.. .......+. .+.+||||||+|.|+. ..+.+|.+.++.. ..-+|++||.....
T Consensus 84 h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~-~~~kVVIIDEad~ls~---~a~naLLk~LEep~~~t~~Il~t~~~~kl 159 (504)
T PRK14963 84 HPDVLEIDAASNNSVEDVRDLREKVLLAPLR-GGRKVYILDEAHMMSK---SAFNALLKTLEEPPEHVIFILATTEPEKM 159 (504)
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhcccc-CCCeEEEEECccccCH---HHHHHHHHHHHhCCCCEEEEEEcCChhhC
Confidence 357999999875431 011111222 3578999999999965 3567788888773 33468888876654
Q ss_pred Ccccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 005137 88 LPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQN 151 (712)
Q Consensus 88 Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~s 151 (712)
.+.+.+| ..++|++|+..++..+|..||.+||+.+++++++.|+..++||+|+++|.||.+...
T Consensus 160 ~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~~ 224 (504)
T PRK14963 160 PPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLAL 224 (504)
T ss_pred ChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 4556677 789999999999999999999999999999999999999999999999999987664
No 31
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.11 E-value=4.6e-10 Score=132.34 Aligned_cols=131 Identities=15% Similarity=0.250 Sum_probs=105.6
Q ss_pred CCcEEEEeCCCccc----cc---ccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCCCC
Q 005137 17 DDEVVEVIHIPDDE----NS---HGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNIT 87 (712)
Q Consensus 17 GydVIELNASDdR~----rn---~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n~~ 87 (712)
.++|+|+|+.+.++ |. ....... ..+.+||||||+|.|+.+ .+.+|.++++. ..+-|||+||+..+.
T Consensus 88 ~~dv~eidaas~~~Vd~iR~l~~~~~~~p~-~~~~KV~IIDEad~lt~~---a~NaLLK~LEEpP~~~~fIl~tt~~~kL 163 (824)
T PRK07764 88 SLDVTEIDAASHGGVDDARELRERAFFAPA-ESRYKIFIIDEAHMVTPQ---GFNALLKIVEEPPEHLKFIFATTEPDKV 163 (824)
T ss_pred CCcEEEecccccCCHHHHHHHHHHHHhchh-cCCceEEEEechhhcCHH---HHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 37899999976432 11 1111112 246799999999999874 67799999997 345588899887765
Q ss_pred Ccccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 005137 88 LPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQN 151 (712)
Q Consensus 88 Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~s 151 (712)
++.+++| ..++|++++..+|..+|..||..||+.+++..+..|+..++||+|.+++.|+-++..
T Consensus 164 l~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEKLia~ 228 (824)
T PRK07764 164 IGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLAG 228 (824)
T ss_pred hHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 6667788 789999999999999999999999999999999999999999999999999876643
No 32
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.09 E-value=7.2e-10 Score=119.01 Aligned_cols=129 Identities=13% Similarity=0.168 Sum_probs=100.9
Q ss_pred CcEEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCCCCC
Q 005137 18 DEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITL 88 (712)
Q Consensus 18 ydVIELNASDdR~r-------n~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n~~L 88 (712)
.+++|+++++.... ........ ..+.+++||||+|.|... .+.++.+.++. ....+||+|++.....
T Consensus 88 ~d~~~~~~~~~~~v~~ir~i~~~~~~~p~-~~~~kviIIDEa~~l~~~---a~naLLk~lEe~~~~~~fIl~t~~~~~l~ 163 (363)
T PRK14961 88 LDLIEIDAASRTKVEEMREILDNIYYSPS-KSRFKVYLIDEVHMLSRH---SFNALLKTLEEPPQHIKFILATTDVEKIP 163 (363)
T ss_pred CceEEecccccCCHHHHHHHHHHHhcCcc-cCCceEEEEEChhhcCHH---HHHHHHHHHhcCCCCeEEEEEcCChHhhh
Confidence 57999998752211 01111111 235789999999999764 45678888886 3445899999876655
Q ss_pred cccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 005137 89 PDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (712)
Q Consensus 89 pkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~ 150 (712)
+.+.+| ..++|++|+.+++..+|..++.+||+.+++++++.|+..++||+|.++|.|+..+.
T Consensus 164 ~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~~l~~~~~ 226 (363)
T PRK14961 164 KTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAIN 226 (363)
T ss_pred HHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 556777 78999999999999999999999999999999999999999999999999976543
No 33
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.06 E-value=6.5e-10 Score=126.52 Aligned_cols=129 Identities=12% Similarity=0.154 Sum_probs=103.6
Q ss_pred CCcEEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCCCC
Q 005137 17 DDEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNIT 87 (712)
Q Consensus 17 GydVIELNASDdR~r-------n~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n~~ 87 (712)
..+++|+++.+.++. ........ ..+.+++||||||.|+.+ ...+|.++++. ..+.|||+||+....
T Consensus 87 ~~d~~eid~~s~~~v~~ir~l~~~~~~~p~-~~~~KVvIIdev~~Lt~~---a~naLLk~LEepp~~~~fIl~t~~~~kl 162 (576)
T PRK14965 87 SVDVFEIDGASNTGVDDIRELRENVKYLPS-RSRYKIFIIDEVHMLSTN---AFNALLKTLEEPPPHVKFIFATTEPHKV 162 (576)
T ss_pred CCCeeeeeccCccCHHHHHHHHHHHHhccc-cCCceEEEEEChhhCCHH---HHHHHHHHHHcCCCCeEEEEEeCChhhh
Confidence 457999998764321 01111112 236799999999999864 56799999987 356799999998765
Q ss_pred Ccccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 005137 88 LPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWC 149 (712)
Q Consensus 88 Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s 149 (712)
++.+++| ..++|++++..++..+|..|+.+||+.++++.+..|+..++||+|.+++.|+-+.
T Consensus 163 ~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldqli 225 (576)
T PRK14965 163 PITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVL 225 (576)
T ss_pred hHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5566788 7899999999999999999999999999999999999999999999999996443
No 34
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.05 E-value=7.9e-10 Score=126.79 Aligned_cols=128 Identities=14% Similarity=0.174 Sum_probs=101.1
Q ss_pred CcEEEEeCCCcccc----c--ccc-cccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCCCCC
Q 005137 18 DEVVEVIHIPDDEN----S--HGV-MGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITL 88 (712)
Q Consensus 18 ydVIELNASDdR~r----n--~~v-~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n~~L 88 (712)
-+|+|+|+++.+.. . ..+ .... ..+.+||||||+|.|..+ .+.+|.++++. .+..|||+||+....+
T Consensus 88 pDv~eId~a~~~~Id~iR~L~~~~~~~p~-~g~~kVIIIDEad~Lt~~---a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 88 VDVVEIDGASNRGIDDAKRLKEAIGYAPM-EGRYKVFIIDEAHMLTRE---AFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred CceEEEecccccCHHHHHHHHHHHHhhhh-cCCceEEEEEChHhCCHH---HHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 46999999764421 0 001 0112 235789999999999764 45788888876 3456899999877655
Q ss_pred cccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 005137 89 PDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWC 149 (712)
Q Consensus 89 pkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s 149 (712)
+.+++| ..|+|++++..++..+|..|+.+||+.+++++++.|+..++||+|++|+.|+.+.
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 556677 7899999999999999999999999999999999999999999999999996443
No 35
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.04 E-value=1.4e-09 Score=122.39 Aligned_cols=129 Identities=10% Similarity=0.136 Sum_probs=101.2
Q ss_pred CcEEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCcEEEEecCCCCCC
Q 005137 18 DEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNNITL 88 (712)
Q Consensus 18 ydVIELNASDdR~r-------n~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrPIILTCND~n~~L 88 (712)
.+|+|+||.+.++. .......+++ ++++|||||||.|+. +.+.+|.++++.. .+-||++|++.....
T Consensus 97 ~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~-~~KVvIIDEa~~Ls~---~a~naLLk~LEepp~~~vfI~aTte~~kI~ 172 (507)
T PRK06645 97 PDIIEIDAASKTSVDDIRRIIESAEYKPLQG-KHKIFIIDEVHMLSK---GAFNALLKTLEEPPPHIIFIFATTEVQKIP 172 (507)
T ss_pred CcEEEeeccCCCCHHHHHHHHHHHHhccccC-CcEEEEEEChhhcCH---HHHHHHHHHHhhcCCCEEEEEEeCChHHhh
Confidence 58999999764321 0111122233 679999999999976 4577888888863 334778888876544
Q ss_pred cccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 005137 89 PDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (712)
Q Consensus 89 pkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~ 150 (712)
+.+.+| ..+.|++++..++..+|..|+.+||+.+++++++.|+..++||+|.+++.|+-...
T Consensus 173 ~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~al~~Ldkai~ 235 (507)
T PRK06645 173 ATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAAS 235 (507)
T ss_pred HHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 456677 77999999999999999999999999999999999999999999999999976543
No 36
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.02 E-value=2.1e-09 Score=120.71 Aligned_cols=144 Identities=22% Similarity=0.264 Sum_probs=107.2
Q ss_pred hhHHHhhCCCcEEEEeC-CCcccc---------------cc------c----c-cccCC------CCCCcEEEEeCCCCC
Q 005137 9 LCEAAQHADDEVVEVIH-IPDDEN---------------SH------G----V-MGKSD------NHVKPLILIEDVDVF 55 (712)
Q Consensus 9 ~~aIAkelGydVIELNA-SDdR~r---------------n~------~----v-~gsl~------~~kkkLILIDEVD~L 55 (712)
.-++||++||.++|.++ .+.+.. ++ + . .|.+. -.++++||+||....
T Consensus 127 vkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~ 206 (634)
T KOG1970|consen 127 VKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQ 206 (634)
T ss_pred HHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchh
Confidence 34789999999999874 333311 00 0 0 12221 135789999999999
Q ss_pred Chh-hH-HHHHHHHHHHHhcCCcEEEEecCCCC--------CCccccc---c-eeeEEcCCCHHHHHHHHHHHHHHcCCC
Q 005137 56 FPE-DR-GFIAGIQQIAEKAKGPVILTSNSNNI--------TLPDSLD---R-LEVSFTMPMPKDLLSHLQMICAAEKVE 121 (712)
Q Consensus 56 fee-Dr-Gf~~AL~~LiekTKrPIILTCND~n~--------~Lpklls---r-l~IrFkrPs~~eI~srL~~Ic~~EGik 121 (712)
|.. |. -|...|..+.....+|+|++-.|... ..+.-++ + ..|.|++..+.-|++.|.+||..|+.+
T Consensus 207 ~~~d~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~ 286 (634)
T KOG1970|consen 207 FYRDDSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANK 286 (634)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhccc
Confidence 876 33 35567777888899998888766321 1222222 2 689999999999999999999999998
Q ss_pred CC------HHHHHHHHHHcCCcHHHHHHHHHHHhhcC
Q 005137 122 LQ------QHLLVQLIESCRADIRKTIMHLQFWCQNK 152 (712)
Q Consensus 122 Id------~~~L~~LI~~S~GDIRqaLN~LQf~s~s~ 152 (712)
.. ...++.|+.+++||||.|||+||||+..+
T Consensus 287 ~s~~k~~~~~~v~~i~~~s~GDIRsAInsLQlssskg 323 (634)
T KOG1970|consen 287 KSGIKVPDTAEVELICQGSGGDIRSAINSLQLSSSKG 323 (634)
T ss_pred ccCCcCchhHHHHHHHHhcCccHHHHHhHhhhhcccC
Confidence 87 79999999999999999999999997444
No 37
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.00 E-value=1.9e-09 Score=119.50 Aligned_cols=130 Identities=12% Similarity=0.184 Sum_probs=103.5
Q ss_pred CCcEEEEeCCCcccc------cc-cccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCcEEEEecCCCCC
Q 005137 17 DDEVVEVIHIPDDEN------SH-GVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNNIT 87 (712)
Q Consensus 17 GydVIELNASDdR~r------n~-~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrPIILTCND~n~~ 87 (712)
..+++|+++.+.++. .. ...... ...+++|||||+|.|+.+ ...+|.++++.. .+-+||+||+....
T Consensus 89 ~~d~~~i~g~~~~gid~ir~i~~~l~~~~~-~~~~kvvIIdead~lt~~---~~n~LLk~lEep~~~~~~Il~t~~~~kl 164 (451)
T PRK06305 89 SLDVLEIDGASHRGIEDIRQINETVLFTPS-KSRYKIYIIDEVHMLTKE---AFNSLLKTLEEPPQHVKFFLATTEIHKI 164 (451)
T ss_pred CCceEEeeccccCCHHHHHHHHHHHHhhhh-cCCCEEEEEecHHhhCHH---HHHHHHHHhhcCCCCceEEEEeCChHhc
Confidence 367999998665421 00 000111 235789999999999864 567888888873 45588999887665
Q ss_pred Ccccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 005137 88 LPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (712)
Q Consensus 88 Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~ 150 (712)
++.+++| ..++|++++.+++..+|..++.+||+.+++++++.|+..++||+|.++|.|+....
T Consensus 165 ~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Lekl~~ 228 (451)
T PRK06305 165 PGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVG 228 (451)
T ss_pred chHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6667788 78999999999999999999999999999999999999999999999999997653
No 38
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.00 E-value=2.5e-09 Score=122.79 Aligned_cols=129 Identities=14% Similarity=0.197 Sum_probs=103.7
Q ss_pred CCcEEEEeCCCcccc----c---ccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCcEEEEecCCCCC
Q 005137 17 DDEVVEVIHIPDDEN----S---HGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNNIT 87 (712)
Q Consensus 17 GydVIELNASDdR~r----n---~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrPIILTCND~n~~ 87 (712)
.++++|+++++.+.. . ......+. ...+++||||+|.|+.. .+.+|.++++.. ..-+||+|+.....
T Consensus 89 ~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~-~~~KVvIIdea~~Ls~~---a~naLLK~LEepp~~tifIL~tt~~~kI 164 (614)
T PRK14971 89 SYNIHELDAASNNSVDDIRNLIEQVRIPPQI-GKYKIYIIDEVHMLSQA---AFNAFLKTLEEPPSYAIFILATTEKHKI 164 (614)
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhCccc-CCcEEEEEECcccCCHH---HHHHHHHHHhCCCCCeEEEEEeCCchhc
Confidence 488999999865421 0 11111222 36799999999999774 567888888863 23388899887776
Q ss_pred Ccccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 005137 88 LPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWC 149 (712)
Q Consensus 88 Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s 149 (712)
++.+++| ..++|++++..++..+|..|+.+||+.+++++++.|+..++||+|.+++.|+..+
T Consensus 165 l~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al~~Lekl~ 227 (614)
T PRK14971 165 LPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVV 227 (614)
T ss_pred hHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6777888 7899999999999999999999999999999999999999999999999997643
No 39
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.96 E-value=4.2e-09 Score=119.69 Aligned_cols=129 Identities=14% Similarity=0.175 Sum_probs=101.0
Q ss_pred CCcEEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCcEEEEecCCCCC
Q 005137 17 DDEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNNIT 87 (712)
Q Consensus 17 GydVIELNASDdR~r-------n~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrPIILTCND~n~~ 87 (712)
..+|+|++|++.++. ....... ...+.+|+||||||.|+.+ .+.+|.++++.. .+=+||+|+.+...
T Consensus 87 ~~dv~eidaas~~~vd~ir~i~~~v~~~p-~~~~~kViIIDE~~~Lt~~---a~naLLKtLEepp~~~ifIlatt~~~ki 162 (559)
T PRK05563 87 LMDVIEIDAASNNGVDEIRDIRDKVKYAP-SEAKYKVYIIDEVHMLSTG---AFNALLKTLEEPPAHVIFILATTEPHKI 162 (559)
T ss_pred CCCeEEeeccccCCHHHHHHHHHHHhhCc-ccCCeEEEEEECcccCCHH---HHHHHHHHhcCCCCCeEEEEEeCChhhC
Confidence 579999999764421 1111111 1236799999999999864 566888887763 33467778777665
Q ss_pred Ccccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 005137 88 LPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWC 149 (712)
Q Consensus 88 Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s 149 (712)
++.+++| ..+.|++|+..++..+|+.|+.+||+.++++++..|+..++||+|.+++.|+...
T Consensus 163 ~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al~~Ldq~~ 225 (559)
T PRK05563 163 PATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAI 225 (559)
T ss_pred cHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5556777 7899999999999999999999999999999999999999999999999997543
No 40
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.94 E-value=4.8e-09 Score=120.20 Aligned_cols=132 Identities=14% Similarity=0.142 Sum_probs=103.9
Q ss_pred HhhCCCcEEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecC
Q 005137 13 AQHADDEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNS 83 (712)
Q Consensus 13 AkelGydVIELNASDdR~r-------n~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND 83 (712)
......+|+|++|...++. .......+++ +.+||||||||.|... ...+|.++++. ..+-|||+|++
T Consensus 96 ~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a-~~KVvIIDEad~Ls~~---a~naLLKtLEePp~~~~fIl~tte 171 (598)
T PRK09111 96 MEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSA-RYKVYIIDEVHMLSTA---AFNALLKTLEEPPPHVKFIFATTE 171 (598)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHHhchhcC-CcEEEEEEChHhCCHH---HHHHHHHHHHhCCCCeEEEEEeCC
Confidence 3344578999998764321 0111112233 5799999999999865 45678888876 34559999998
Q ss_pred CCCCCcccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHH
Q 005137 84 NNITLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFW 148 (712)
Q Consensus 84 ~n~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~ 148 (712)
....++.+++| ..+.|++++..++..+|..|+.+||+.+++++++.|+..++||+|.+++.|+-.
T Consensus 172 ~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~Ldkl 237 (598)
T PRK09111 172 IRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQA 237 (598)
T ss_pred hhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 87656667778 789999999999999999999999999999999999999999999999999544
No 41
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.93 E-value=6.8e-09 Score=119.36 Aligned_cols=132 Identities=13% Similarity=0.203 Sum_probs=104.3
Q ss_pred CCcEEEEeCCCccc----c---cccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCcEEEEecCCCCC
Q 005137 17 DDEVVEVIHIPDDE----N---SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNNIT 87 (712)
Q Consensus 17 GydVIELNASDdR~----r---n~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrPIILTCND~n~~ 87 (712)
+.+++|+++...+. | .......+. .+.+||||||+|.|..+ .+.+|.++++.. ..-+||+|++....
T Consensus 89 h~D~~ei~~~~~~~vd~IReii~~a~~~p~~-~~~KViIIDEad~Lt~~---a~naLLK~LEePp~~tvfIL~t~~~~~l 164 (620)
T PRK14948 89 ALDVIEIDAASNTGVDNIRELIERAQFAPVQ-ARWKVYVIDECHMLSTA---AFNALLKTLEEPPPRVVFVLATTDPQRV 164 (620)
T ss_pred CccEEEEeccccCCHHHHHHHHHHHhhChhc-CCceEEEEECccccCHH---HHHHHHHHHhcCCcCeEEEEEeCChhhh
Confidence 45799999875332 1 011111122 35789999999999864 567888888863 34488999987766
Q ss_pred Ccccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC
Q 005137 88 LPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNK 152 (712)
Q Consensus 88 Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~s~ 152 (712)
++.+++| ..++|++++..++..+|..|+.+||+.++++++..|++.++||+|++++.|+..+...
T Consensus 165 lpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~lLeklsL~~ 230 (620)
T PRK14948 165 LPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQLSLLP 230 (620)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcc
Confidence 6777888 7899999999999999999999999999999999999999999999999999766543
No 42
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.91 E-value=8.8e-09 Score=107.93 Aligned_cols=130 Identities=14% Similarity=0.191 Sum_probs=100.0
Q ss_pred CCcEEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCCCC
Q 005137 17 DDEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNIT 87 (712)
Q Consensus 17 GydVIELNASDdR~r-------n~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n~~ 87 (712)
.++++++|+++.+.. .......++ .++++|||||+|.+..+ ...++.+.++. ...-+|++||+....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~-~~~~vviidea~~l~~~---~~~~Ll~~le~~~~~~~lIl~~~~~~~l 160 (355)
T TIGR02397 85 SLDVIEIDAASNNGVDDIREILDNVKYAPSS-GKYKVYIIDEVHMLSKS---AFNALLKTLEEPPEHVVFILATTEPHKI 160 (355)
T ss_pred CCCEEEeeccccCCHHHHHHHHHHHhcCccc-CCceEEEEeChhhcCHH---HHHHHHHHHhCCccceeEEEEeCCHHHH
Confidence 478999999853321 111112222 35789999999999764 45667777765 234578888886644
Q ss_pred Ccccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 005137 88 LPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (712)
Q Consensus 88 Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~ 150 (712)
++.+.++ ..+.|.+|+..++..+|..++.++|+.++++++..|+..++||+|++++.|+....
T Consensus 161 ~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~lekl~~ 224 (355)
T TIGR02397 161 PATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLIS 224 (355)
T ss_pred HHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHHHHHHh
Confidence 4556667 78999999999999999999999999999999999999999999999999986554
No 43
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.91 E-value=1.2e-08 Score=105.91 Aligned_cols=108 Identities=22% Similarity=0.318 Sum_probs=90.1
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCCCCCcccccc-eeeEEcCCCHHHHHHHHHHHHHHcC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEK 119 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EG 119 (712)
..++|||||+|.+.++ .+.+|.++++. ..+.||++|+.....++.+.+| ..+.|.+|+.+++..+|..+|.++|
T Consensus 125 ~~~vlilDe~~~l~~~---~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~ 201 (337)
T PRK12402 125 DYKTILLDNAEALRED---AQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEG 201 (337)
T ss_pred CCcEEEEeCcccCCHH---HHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4679999999999764 34566676664 2356899998765555556677 7899999999999999999999999
Q ss_pred CCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC
Q 005137 120 VELQQHLLVQLIESCRADIRKTIMHLQFWCQNKG 153 (712)
Q Consensus 120 ikId~~~L~~LI~~S~GDIRqaLN~LQf~s~s~~ 153 (712)
+.+++++++.|+..++||+|+++|.|+.++...+
T Consensus 202 ~~~~~~al~~l~~~~~gdlr~l~~~l~~~~~~~~ 235 (337)
T PRK12402 202 VDYDDDGLELIAYYAGGDLRKAILTLQTAALAAG 235 (337)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999998875443
No 44
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.91 E-value=9.8e-09 Score=109.45 Aligned_cols=132 Identities=14% Similarity=0.190 Sum_probs=101.2
Q ss_pred CCCcEEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCcEEEEecCCCC
Q 005137 16 ADDEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNNI 86 (712)
Q Consensus 16 lGydVIELNASDdR~r-------n~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrPIILTCND~n~ 86 (712)
++++++|+|+.+.+.. .........+ ++++||+||+|.+... .+.++.++++.. ..-+|++||....
T Consensus 75 ~~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~-~~kiviIDE~~~l~~~---~~~~ll~~le~~~~~~~~Il~~~~~~k 150 (367)
T PRK14970 75 FSFNIFELDAASNNSVDDIRNLIDQVRIPPQTG-KYKIYIIDEVHMLSSA---AFNAFLKTLEEPPAHAIFILATTEKHK 150 (367)
T ss_pred CCcceEEeccccCCCHHHHHHHHHHHhhccccC-CcEEEEEeChhhcCHH---HHHHHHHHHhCCCCceEEEEEeCCccc
Confidence 4678999998764321 0100112223 5689999999999763 456676666652 2337888888766
Q ss_pred CCcccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 005137 87 TLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQN 151 (712)
Q Consensus 87 ~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~s 151 (712)
.++.+.++ ..++|++|+..++..+|..++.++|+.+++++++.|+..++||+|++++.|+..+..
T Consensus 151 l~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~~lekl~~y 216 (367)
T PRK14970 151 IIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTF 216 (367)
T ss_pred CCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 55566667 779999999999999999999999999999999999999999999999999987753
No 45
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.85 E-value=1.5e-08 Score=113.52 Aligned_cols=129 Identities=16% Similarity=0.240 Sum_probs=99.7
Q ss_pred CcEEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCcEEEEecCCCCCC
Q 005137 18 DEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNNITL 88 (712)
Q Consensus 18 ydVIELNASDdR~r-------n~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrPIILTCND~n~~L 88 (712)
-+++|++|++.++. ......... .+++|+||||||.|+.+ +..+|.++++.. ..-+|+++++.....
T Consensus 88 ~d~~eidaas~~gvd~ir~I~~~~~~~P~~-~~~KVvIIDEad~Lt~~---a~naLLk~LEepp~~~v~Il~tt~~~kl~ 163 (486)
T PRK14953 88 PDLIEIDAASNRGIDDIRALRDAVSYTPIK-GKYKVYIIDEAHMLTKE---AFNALLKTLEEPPPRTIFILCTTEYDKIP 163 (486)
T ss_pred CcEEEEeCccCCCHHHHHHHHHHHHhCccc-CCeeEEEEEChhhcCHH---HHHHHHHHHhcCCCCeEEEEEECCHHHHH
Confidence 37999999765431 011111222 35789999999999764 557888888764 344777777765544
Q ss_pred cccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 005137 89 PDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (712)
Q Consensus 89 pkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~ 150 (712)
+.+.+| ..++|++|+..++..+|..++.++|+.+++++++.|+..++||+|.+++.|+..+.
T Consensus 164 ~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~Ldkl~~ 226 (486)
T PRK14953 164 PTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQAST 226 (486)
T ss_pred HHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 445666 78999999999999999999999999999999999999999999999999987654
No 46
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.85 E-value=1.4e-08 Score=118.19 Aligned_cols=131 Identities=11% Similarity=0.161 Sum_probs=102.3
Q ss_pred hCCCcEEEEeCCCccc----c---cccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCcEEEEecCCC
Q 005137 15 HADDEVVEVIHIPDDE----N---SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNN 85 (712)
Q Consensus 15 elGydVIELNASDdR~----r---n~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrPIILTCND~n 85 (712)
....+++|++|...++ | ........ ..+.+|+||||||.|+.+ .+.+|.++++.- .+-+||+|+++.
T Consensus 84 ~~~~Dvieidaasn~~vd~IReLie~~~~~P~-~g~~KV~IIDEa~~LT~~---A~NALLKtLEEPP~~tifILaTte~~ 159 (725)
T PRK07133 84 NNSLDIIEMDAASNNGVDEIRELIENVKNLPT-QSKYKIYIIDEVHMLSKS---AFNALLKTLEEPPKHVIFILATTEVH 159 (725)
T ss_pred cCCCcEEEEeccccCCHHHHHHHHHHHHhchh-cCCCEEEEEEChhhCCHH---HHHHHHHHhhcCCCceEEEEEcCChh
Confidence 3457899999854321 1 01111112 236789999999999864 677888888873 233788888777
Q ss_pred CCCcccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 005137 86 ITLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWC 149 (712)
Q Consensus 86 ~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s 149 (712)
..++.+++| ..++|++++..++..+|..++.+||+.++++++..|+..++||+|.+++.|+-..
T Consensus 160 KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLekl~ 224 (725)
T PRK07133 160 KIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVS 224 (725)
T ss_pred hhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 655567788 7899999999999999999999999999999999999999999999999998654
No 47
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.85 E-value=1.8e-08 Score=114.98 Aligned_cols=132 Identities=17% Similarity=0.190 Sum_probs=103.5
Q ss_pred hCCCcEEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCcEEEEecCCC
Q 005137 15 HADDEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNN 85 (712)
Q Consensus 15 elGydVIELNASDdR~r-------n~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrPIILTCND~n 85 (712)
..+.+++|+|+++.+.. ......... ..++||||||+|.|..+ .+.+|.++++.. ..-|||++++..
T Consensus 86 ~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~-~~~kVvIIDEa~~L~~~---a~naLLk~LEepp~~tv~Il~t~~~~ 161 (585)
T PRK14950 86 GSAVDVIEMDAASHTSVDDAREIIERVQFRPAL-ARYKVYIIDEVHMLSTA---AFNALLKTLEEPPPHAIFILATTEVH 161 (585)
T ss_pred CCCCeEEEEeccccCCHHHHHHHHHHHhhCccc-CCeEEEEEeChHhCCHH---HHHHHHHHHhcCCCCeEEEEEeCChh
Confidence 34578999999764421 011111222 35789999999999864 456777777763 345888898876
Q ss_pred CCCcccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 005137 86 ITLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (712)
Q Consensus 86 ~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~ 150 (712)
..++.+.++ ..+.|++++..++..+|..++.++|+.++++++..|+..++||+|.+++.|+-+..
T Consensus 162 kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~LekL~~ 227 (585)
T PRK14950 162 KVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLAT 227 (585)
T ss_pred hhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 655556677 78999999999999999999999999999999999999999999999999997665
No 48
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.84 E-value=1.1e-08 Score=117.00 Aligned_cols=132 Identities=11% Similarity=0.129 Sum_probs=103.1
Q ss_pred CCcEEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCcEEEEecCCCCC
Q 005137 17 DDEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNNIT 87 (712)
Q Consensus 17 GydVIELNASDdR~r-------n~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrPIILTCND~n~~ 87 (712)
..+++|++|++.++. .........+ +++++||||||.|+.+ .+.+|.++++.. ..=+||+|+.+...
T Consensus 87 h~DiieIdaas~igVd~IReIi~~~~~~P~~~-~~KVIIIDEad~Lt~~---A~NaLLKtLEEPp~~tvfIL~Tt~~~KL 162 (605)
T PRK05896 87 SVDIVELDAASNNGVDEIRNIIDNINYLPTTF-KYKVYIIDEAHMLSTS---AWNALLKTLEEPPKHVVFIFATTEFQKI 162 (605)
T ss_pred CCceEEeccccccCHHHHHHHHHHHHhchhhC-CcEEEEEechHhCCHH---HHHHHHHHHHhCCCcEEEEEECCChHhh
Confidence 468999998764321 0111111223 5789999999999764 567898888863 22377788877665
Q ss_pred Ccccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC
Q 005137 88 LPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNK 152 (712)
Q Consensus 88 Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~s~ 152 (712)
++.+++| ..++|++|+..++..+|..|+.+||+.++++++..|+..++||+|.+++.|+......
T Consensus 163 l~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLekL~~y~ 228 (605)
T PRK05896 163 PLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFK 228 (605)
T ss_pred hHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhhc
Confidence 5566778 7899999999999999999999999999999999999999999999999999866543
No 49
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.81 E-value=1.7e-08 Score=109.85 Aligned_cols=129 Identities=13% Similarity=0.150 Sum_probs=100.1
Q ss_pred CCcEEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCcEEEEecCCCCC
Q 005137 17 DDEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNNIT 87 (712)
Q Consensus 17 GydVIELNASDdR~r-------n~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrPIILTCND~n~~ 87 (712)
..+++|+++++.++. .......+++ .+++|||||+|.|... .+.+|.++++.. ..-||+++++....
T Consensus 95 ~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~-~~kvvIIdea~~l~~~---~~~~LLk~LEep~~~t~~Il~t~~~~kl 170 (397)
T PRK14955 95 SLNISEFDAASNNSVDDIRLLRENVRYGPQKG-RYRVYIIDEVHMLSIA---AFNAFLKTLEEPPPHAIFIFATTELHKI 170 (397)
T ss_pred CCCeEeecccccCCHHHHHHHHHHHhhchhcC-CeEEEEEeChhhCCHH---HHHHHHHHHhcCCCCeEEEEEeCChHHh
Confidence 357889988664421 1111122233 5789999999999864 456788888763 33488888876554
Q ss_pred Ccccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 005137 88 LPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWC 149 (712)
Q Consensus 88 Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s 149 (712)
++.+.+| ..++|++++..++..+|..++..+|+.+++++++.|+..++||+|.+++.|+...
T Consensus 171 ~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~~L~kl~ 233 (397)
T PRK14955 171 PATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVI 233 (397)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4455666 7899999999999999999999999999999999999999999999999999653
No 50
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=2.9e-08 Score=114.22 Aligned_cols=130 Identities=15% Similarity=0.199 Sum_probs=100.6
Q ss_pred CCcEEEEeCCCccc----c---cccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCcEEEEecCCCCC
Q 005137 17 DDEVVEVIHIPDDE----N---SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNNIT 87 (712)
Q Consensus 17 GydVIELNASDdR~----r---n~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrPIILTCND~n~~ 87 (712)
..+++|+++...++ | .....+.+++ .++||||||+|.|+.+ ...+|.++++.. ..=+||+|++....
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~-~~KVvIIdEad~Lt~~---a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIRQLRENVRYGPQKG-RYRVYIIDEVHMLSTA---AFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred CCCeEEecccccCCHHHHHHHHHHHHhhhhcC-CCEEEEEeChhhcCHH---HHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 36788888754331 1 1111122333 5789999999999864 467888888873 23378888877655
Q ss_pred Ccccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 005137 88 LPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (712)
Q Consensus 88 Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~ 150 (712)
++.+.+| ..++|++++..++..+|..|+..||+.+++++++.|+..++||+|.+++.|+-...
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eLeKL~~ 234 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIA 234 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5556677 88999999999999999999999999999999999999999999999999985443
No 51
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.79 E-value=2.7e-08 Score=113.35 Aligned_cols=127 Identities=9% Similarity=0.166 Sum_probs=98.1
Q ss_pred CCcEEEEeCCCccc----cc---ccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCCCC
Q 005137 17 DDEVVEVIHIPDDE----NS---HGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNIT 87 (712)
Q Consensus 17 GydVIELNASDdR~----rn---~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n~~ 87 (712)
.++++|+++...+. |. ....... ..+++++||||+|.|+.+ .+.+|.++++. ...=+||+|++....
T Consensus 87 ~~dv~~idgas~~~vddIr~l~e~~~~~p~-~~~~KVvIIDEa~~Ls~~---a~naLLK~LEepp~~~vfI~~tte~~kL 162 (563)
T PRK06647 87 SLDVIEIDGASNTSVQDVRQIKEEIMFPPA-SSRYRVYIIDEVHMLSNS---AFNALLKTIEEPPPYIVFIFATTEVHKL 162 (563)
T ss_pred CCCeEEecCcccCCHHHHHHHHHHHHhchh-cCCCEEEEEEChhhcCHH---HHHHHHHhhccCCCCEEEEEecCChHHh
Confidence 47899999754221 10 0011112 346789999999999764 56788888876 233377788776554
Q ss_pred Ccccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Q 005137 88 LPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQF 147 (712)
Q Consensus 88 Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf 147 (712)
.+.+++| ..++|++++.+++..+|..+|..+|+.++++++..|+..++||+|.+++.|+-
T Consensus 163 ~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~alslLdk 223 (563)
T PRK06647 163 PATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQ 223 (563)
T ss_pred HHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4556777 77999999999999999999999999999999999999999999999999964
No 52
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.69 E-value=3.8e-08 Score=111.01 Aligned_cols=136 Identities=15% Similarity=0.185 Sum_probs=108.8
Q ss_pred CcEEEEeCCCccc----c--cccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCCCCCc
Q 005137 18 DEVVEVIHIPDDE----N--SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLP 89 (712)
Q Consensus 18 ydVIELNASDdR~----r--n~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n~~Lp 89 (712)
.||+|+.|...++ | +--+.-.....+.|+.|||||+-|+.+ .+.||.+.++. ..+=|||.++++.+..+
T Consensus 88 ~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~---afNALLKTLEEPP~hV~FIlATTe~~Kip~ 164 (515)
T COG2812 88 IDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQ---AFNALLKTLEEPPSHVKFILATTEPQKIPN 164 (515)
T ss_pred ccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHH---HHHHHhcccccCccCeEEEEecCCcCcCch
Confidence 7899999866432 1 000110112347899999999999864 77888888776 45569999999988666
Q ss_pred ccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHH-HHHhhcCCCCc
Q 005137 90 DSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHL-QFWCQNKGYGK 156 (712)
Q Consensus 90 kllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~L-Qf~s~s~~~~~ 156 (712)
..++| ..+.|++.+.++|..+|..|+.+||+.+++++|.-|++.++|-+|-++..| |++..+.+..+
T Consensus 165 TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~~~~It 233 (515)
T COG2812 165 TILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGEGEIT 233 (515)
T ss_pred hhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHHccCCccc
Confidence 68899 789999999999999999999999999999999999999999999999999 67776654433
No 53
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.59 E-value=3.9e-07 Score=99.59 Aligned_cols=141 Identities=13% Similarity=0.128 Sum_probs=102.6
Q ss_pred hhhHHHhhCCCcEEEEeCCCcccc-----cccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhcCCcEEEEec
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSN 82 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~r-----n~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekTKrPIILTCN 82 (712)
.+.++|+..+.+++++|+++.... ...........++++|+|||||.+.... +.+|..+++...+-+|.+++
T Consensus 52 LA~~ia~~~~~~~~~l~a~~~~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~---q~~LL~~le~~~iilI~att 128 (413)
T PRK13342 52 LARIIAGATDAPFEALSAVTSGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQ---QDALLPHVEDGTITLIGATT 128 (413)
T ss_pred HHHHHHHHhCCCEEEEecccccHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHH---HHHHHHHhhcCcEEEEEeCC
Confidence 456889999999999999874211 0000011112357899999999997653 45777777765543443333
Q ss_pred CC--CCCCcccccc-eeeEEcCCCHHHHHHHHHHHHHHc--CC-CCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 005137 83 SN--NITLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAE--KV-ELQQHLLVQLIESCRADIRKTIMHLQFWCQN 151 (712)
Q Consensus 83 D~--n~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~E--Gi-kId~~~L~~LI~~S~GDIRqaLN~LQf~s~s 151 (712)
.. ....+.+++| ..++|.+++.+++..+|..++..+ |+ .+++++++.|+..++||+|+++|.|+.....
T Consensus 129 ~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~ 203 (413)
T PRK13342 129 ENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELAALG 203 (413)
T ss_pred CChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 21 1234556677 789999999999999999998763 55 8999999999999999999999999987654
No 54
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.50 E-value=3.5e-07 Score=107.16 Aligned_cols=138 Identities=14% Similarity=0.153 Sum_probs=102.0
Q ss_pred hhhHHHhhCCCcEEEEeCCCcccc---c--ccccccC-CCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhcCCcEEEEe
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDEN---S--HGVMGKS-DNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTS 81 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~r---n--~~v~gsl-~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekTKrPIILTC 81 (712)
.+.++|+..+..++++||++...+ . ......+ ...+.++|+|||||.+... .+.+|..+++... ||+|+
T Consensus 68 LA~aIA~~~~~~f~~lna~~~~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~---qQdaLL~~lE~g~--IiLI~ 142 (725)
T PRK13341 68 LARIIANHTRAHFSSLNAVLAGVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA---QQDALLPWVENGT--ITLIG 142 (725)
T ss_pred HHHHHHHHhcCcceeehhhhhhhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH---HHHHHHHHhcCce--EEEEE
Confidence 467889999999999999863211 0 0000001 1124679999999999764 3457777777654 55554
Q ss_pred cC-CC---CCCcccccc-eeeEEcCCCHHHHHHHHHHHHH-------HcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 005137 82 NS-NN---ITLPDSLDR-LEVSFTMPMPKDLLSHLQMICA-------AEKVELQQHLLVQLIESCRADIRKTIMHLQFWC 149 (712)
Q Consensus 82 ND-~n---~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~-------~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s 149 (712)
.. .+ ...+.+++| ..++|++++.+++...|+.++. .+++.+++++++.|+..+.||+|+++|.|+...
T Consensus 143 aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~Le~a~ 222 (725)
T PRK13341 143 ATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNALELAV 222 (725)
T ss_pred ecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 22 12 223456677 7799999999999999999987 678999999999999999999999999999865
Q ss_pred h
Q 005137 150 Q 150 (712)
Q Consensus 150 ~ 150 (712)
.
T Consensus 223 ~ 223 (725)
T PRK13341 223 E 223 (725)
T ss_pred H
Confidence 4
No 55
>PRK08727 hypothetical protein; Validated
Probab=98.45 E-value=1.3e-06 Score=88.69 Aligned_cols=105 Identities=10% Similarity=0.109 Sum_probs=83.1
Q ss_pred CcEEEEeCCCCCChhhHHHHHHHHHHHH---hcCCcEEEEecCCCC----CCcccccc----eeeEEcCCCHHHHHHHHH
Q 005137 44 KPLILIEDVDVFFPEDRGFIAGIQQIAE---KAKGPVILTSNSNNI----TLPDSLDR----LEVSFTMPMPKDLLSHLQ 112 (712)
Q Consensus 44 kkLILIDEVD~LfeeDrGf~~AL~~Lie---kTKrPIILTCND~n~----~Lpkllsr----l~IrFkrPs~~eI~srL~ 112 (712)
..+|+|||+|.+.... ....++-.+++ ..+.+||+|+|.... ..+++.+| ..+.|++|+.+++...|+
T Consensus 94 ~dlLiIDDi~~l~~~~-~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~ 172 (233)
T PRK08727 94 RSLVALDGLESIAGQR-EDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLR 172 (233)
T ss_pred CCEEEEeCcccccCCh-HHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHH
Confidence 4699999999886432 22233333433 345689999998532 24566666 588999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 005137 113 MICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWC 149 (712)
Q Consensus 113 ~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s 149 (712)
..|..+|+.+++++++.|+..+.||+|.++|.|+..-
T Consensus 173 ~~a~~~~l~l~~e~~~~La~~~~rd~r~~l~~L~~l~ 209 (233)
T PRK08727 173 ERAQRRGLALDEAAIDWLLTHGERELAGLVALLDRLD 209 (233)
T ss_pred HHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998653
No 56
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.36 E-value=1.7e-06 Score=95.13 Aligned_cols=140 Identities=12% Similarity=0.125 Sum_probs=104.3
Q ss_pred hhhHHHhhCCCcEEEEeCCCccc---cccc--ccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhcCCcEEEEe-
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDE---NSHG--VMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTS- 81 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~---rn~~--v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekTKrPIILTC- 81 (712)
.+.+||+..++++.++||...-. |... .......+++.|+++|||..+-... +.++...++... ||||-
T Consensus 64 lA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~Q---QD~lLp~vE~G~--iilIGA 138 (436)
T COG2256 64 LARLIAGTTNAAFEALSAVTSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQ---QDALLPHVENGT--IILIGA 138 (436)
T ss_pred HHHHHHHhhCCceEEeccccccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhh---hhhhhhhhcCCe--EEEEec
Confidence 56789999999999999976321 1000 0001112468999999999996653 357888888876 55544
Q ss_pred cCCCC---CCcccccc-eeeEEcCCCHHHHHHHHHHHH--HHcCCC-----CCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 005137 82 NSNNI---TLPDSLDR-LEVSFTMPMPKDLLSHLQMIC--AAEKVE-----LQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (712)
Q Consensus 82 ND~n~---~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic--~~EGik-----Id~~~L~~LI~~S~GDIRqaLN~LQf~s~ 150 (712)
+..|+ .-+.+++| .++.|++.+.++|...|.+.+ ...|+. +++++++.|+..++||.|++||.|+....
T Consensus 139 TTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~ 218 (436)
T COG2256 139 TTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAAL 218 (436)
T ss_pred cCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 22333 33567888 889999999999999999954 344665 78999999999999999999999998776
Q ss_pred cC
Q 005137 151 NK 152 (712)
Q Consensus 151 s~ 152 (712)
..
T Consensus 219 ~~ 220 (436)
T COG2256 219 SA 220 (436)
T ss_pred hc
Confidence 54
No 57
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.34 E-value=2.3e-06 Score=92.59 Aligned_cols=101 Identities=19% Similarity=0.267 Sum_probs=86.3
Q ss_pred CCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCCCCCcccccc-eeeEEcCCCHHHHHHHHHHHHHHc
Q 005137 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAE 118 (712)
Q Consensus 42 ~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~E 118 (712)
.+.+||||||+|.|..+ ...+|.++++. .+..+||+|+.+...++.+++| ..++|.+|+.+++..+|..++..+
T Consensus 140 g~~rVviIDeAd~l~~~---aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~ 216 (351)
T PRK09112 140 GNWRIVIIDPADDMNRN---AANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ 216 (351)
T ss_pred CCceEEEEEchhhcCHH---HHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc
Confidence 35789999999999654 56788888886 3566999999987767778888 789999999999999999977666
Q ss_pred CCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Q 005137 119 KVELQQHLLVQLIESCRADIRKTIMHLQF 147 (712)
Q Consensus 119 GikId~~~L~~LI~~S~GDIRqaLN~LQf 147 (712)
+ ++++.+..++..++|+.|++++.|+.
T Consensus 217 ~--~~~~~~~~i~~~s~G~pr~Al~ll~~ 243 (351)
T PRK09112 217 G--SDGEITEALLQRSKGSVRKALLLLNY 243 (351)
T ss_pred C--CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 5 88999999999999999999998863
No 58
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.34 E-value=2.7e-06 Score=86.52 Aligned_cols=106 Identities=17% Similarity=0.227 Sum_probs=85.3
Q ss_pred CcEEEEeCCCCCChh---hHHHHHHHHHHHHhcCCcEEEEecCCCC----CCcccccc----eeeEEcCCCHHHHHHHHH
Q 005137 44 KPLILIEDVDVFFPE---DRGFIAGIQQIAEKAKGPVILTSNSNNI----TLPDSLDR----LEVSFTMPMPKDLLSHLQ 112 (712)
Q Consensus 44 kkLILIDEVD~Lfee---DrGf~~AL~~LiekTKrPIILTCND~n~----~Lpkllsr----l~IrFkrPs~~eI~srL~ 112 (712)
..+++|||+|.+... ...+...+..+.+..++.||++++.... ..+++++| ..+.+.+|+.++....|+
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 369999999998542 2234455555555555679999986532 35677777 589999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 005137 113 MICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWC 149 (712)
Q Consensus 113 ~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s 149 (712)
..+..+|+.+++++++.|+..+.+|+|++++.|+..-
T Consensus 178 ~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l~ 214 (235)
T PRK08084 178 LRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLD 214 (235)
T ss_pred HHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 9899999999999999999999999999999998753
No 59
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.24 E-value=1.4e-05 Score=79.65 Aligned_cols=128 Identities=12% Similarity=0.039 Sum_probs=88.4
Q ss_pred CCCcEEEEeCCCcccccccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhcCCcEEEEecCCCC---C-Cccc
Q 005137 16 ADDEVVEVIHIPDDENSHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSNNI---T-LPDS 91 (712)
Q Consensus 16 lGydVIELNASDdR~rn~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekTKrPIILTCND~n~---~-Lpkl 91 (712)
.|..++.+++.+..... . ......+|+|||+|.+....+..+..+..-......++|+++++..+ . .+.+
T Consensus 69 ~~~~~~~i~~~~~~~~~----~--~~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L 142 (227)
T PRK08903 69 GGRNARYLDAASPLLAF----D--FDPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDL 142 (227)
T ss_pred CCCcEEEEehHHhHHHH----h--hcccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHH
Confidence 47788888886633210 1 11235799999999997654433322222223344565555554322 1 1223
Q ss_pred ccc----eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 005137 92 LDR----LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWC 149 (712)
Q Consensus 92 lsr----l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s 149 (712)
+++ ..+++.+|+.......|..++..+|+.+++++++.|+....||+|+.++.|+.+.
T Consensus 143 ~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 143 RTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALD 204 (227)
T ss_pred HHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 334 5789999999999999999999999999999999999999999999888887654
No 60
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.24 E-value=8.6e-06 Score=84.34 Aligned_cols=137 Identities=9% Similarity=0.063 Sum_probs=95.1
Q ss_pred hhhHHHhhCCCcEEEEeCCCcccccccccccC-CCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhcCC-----------
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDENSHGVMGKS-DNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKG----------- 75 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~rn~~v~gsl-~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekTKr----------- 75 (712)
.+.++|++++.++...+++....... ..+.+ .-....+++|||+|.+..... .++..+++..+.
T Consensus 46 la~~ia~~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~~~vl~iDEi~~l~~~~~---e~l~~~~~~~~~~~v~~~~~~~~ 121 (305)
T TIGR00635 46 LAHIIANEMGVNLKITSGPALEKPGD-LAAILTNLEEGDVLFIDEIHRLSPAVE---ELLYPAMEDFRLDIVIGKGPSAR 121 (305)
T ss_pred HHHHHHHHhCCCEEEeccchhcCchh-HHHHHHhcccCCEEEEehHhhhCHHHH---HHhhHHHhhhheeeeeccCcccc
Confidence 45678999999888887654221100 00000 012457999999999987532 344444443221
Q ss_pred -------c--EEEEecCCCCCCcccccc--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHH
Q 005137 76 -------P--VILTSNSNNITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMH 144 (712)
Q Consensus 76 -------P--IILTCND~n~~Lpkllsr--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~ 144 (712)
| +|.++|......+.+++| ..++|.+++.+++...|..++..+++.+++++++.|+..++||.|.+++.
T Consensus 122 ~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~l 201 (305)
T TIGR00635 122 SVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRL 201 (305)
T ss_pred ceeecCCCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHH
Confidence 2 333444443333345567 46799999999999999999999999999999999999999999999988
Q ss_pred HHHH
Q 005137 145 LQFW 148 (712)
Q Consensus 145 LQf~ 148 (712)
+...
T Consensus 202 l~~~ 205 (305)
T TIGR00635 202 LRRV 205 (305)
T ss_pred HHHH
Confidence 8754
No 61
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.21 E-value=2.8e-06 Score=82.45 Aligned_cols=91 Identities=16% Similarity=0.160 Sum_probs=74.4
Q ss_pred CCCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCcEEEEecCCCCCCcccccc-eeeEEcCCCHHHHHHHHHHHHHHc
Q 005137 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNNITLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAE 118 (712)
Q Consensus 42 ~kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrPIILTCND~n~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~E 118 (712)
..+++|||||+|.|... .+.+|.++++.. +.-+||++|+....++.+.+| ..+.|.+|+..++..+|...
T Consensus 95 ~~~kviiide~~~l~~~---~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~---- 167 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEA---AANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ---- 167 (188)
T ss_pred CCeEEEEEechhhhCHH---HHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc----
Confidence 35789999999999875 456777887762 245999999876555666777 78999999999999888776
Q ss_pred CCCCCHHHHHHHHHHcCCcHHHH
Q 005137 119 KVELQQHLLVQLIESCRADIRKT 141 (712)
Q Consensus 119 GikId~~~L~~LI~~S~GDIRqa 141 (712)
| +++++++.|+..++||+|++
T Consensus 168 g--i~~~~~~~i~~~~~g~~r~~ 188 (188)
T TIGR00678 168 G--ISEEAAELLLALAGGSPGAA 188 (188)
T ss_pred C--CCHHHHHHHHHHcCCCcccC
Confidence 5 78999999999999999975
No 62
>PRK06893 DNA replication initiation factor; Validated
Probab=98.19 E-value=9e-06 Score=82.33 Aligned_cols=106 Identities=14% Similarity=0.192 Sum_probs=80.3
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHH----hcCCcEEEEecCCCC----CCcccccc----eeeEEcCCCHHHHHHH
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAE----KAKGPVILTSNSNNI----TLPDSLDR----LEVSFTMPMPKDLLSH 110 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~Lie----kTKrPIILTCND~n~----~Lpkllsr----l~IrFkrPs~~eI~sr 110 (712)
+..+|+|||+|.+... +.+..++..+++ ..++.||+++|.... .++++.+| ..+++.+|+.+.....
T Consensus 91 ~~dlLilDDi~~~~~~-~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~i 169 (229)
T PRK06893 91 QQDLVCLDDLQAVIGN-EEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIV 169 (229)
T ss_pred cCCEEEEeChhhhcCC-hHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHH
Confidence 3579999999988532 222233433333 333334566776432 23566666 4789999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 005137 111 LQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWC 149 (712)
Q Consensus 111 L~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s 149 (712)
|+..|..+|+.+++++++.|++.+.||+|+.++.|+...
T Consensus 170 L~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l~ 208 (229)
T PRK06893 170 LQRNAYQRGIELSDEVANFLLKRLDRDMHTLFDALDLLD 208 (229)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998653
No 63
>PRK06620 hypothetical protein; Validated
Probab=98.17 E-value=1.8e-05 Score=79.93 Aligned_cols=104 Identities=18% Similarity=0.233 Sum_probs=83.0
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhcCCcEEEEecCCCC--CCcccccc----eeeEEcCCCHHHHHHHHHHHHH
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSNNI--TLPDSLDR----LEVSFTMPMPKDLLSHLQMICA 116 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekTKrPIILTCND~n~--~Lpkllsr----l~IrFkrPs~~eI~srL~~Ic~ 116 (712)
...++++||||.+ .+..+...+..+. ....+||++++..++ .++++++| ..+.+++|+.+.+...++..+.
T Consensus 85 ~~d~lliDdi~~~--~~~~lf~l~N~~~-e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 85 KYNAFIIEDIENW--QEPALLHIFNIIN-EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred cCCEEEEeccccc--hHHHHHHHHHHHH-hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH
Confidence 3479999999965 2333444444444 445678888877653 24667777 4799999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 005137 117 AEKVELQQHLLVQLIESCRADIRKTIMHLQFWC 149 (712)
Q Consensus 117 ~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s 149 (712)
..|+.+++++++.|+..+.+|+|.+++.|....
T Consensus 162 ~~~l~l~~ev~~~L~~~~~~d~r~l~~~l~~l~ 194 (214)
T PRK06620 162 ISSVTISRQIIDFLLVNLPREYSKIIEILENIN 194 (214)
T ss_pred HcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999998754
No 64
>PRK09087 hypothetical protein; Validated
Probab=98.17 E-value=1.5e-05 Score=81.23 Aligned_cols=102 Identities=19% Similarity=0.157 Sum_probs=81.6
Q ss_pred CcEEEEeCCCCCChhhHHHHHHHHHHHHhcCCcEEEEecCCCC----CCcccccc----eeeEEcCCCHHHHHHHHHHHH
Q 005137 44 KPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSNNI----TLPDSLDR----LEVSFTMPMPKDLLSHLQMIC 115 (712)
Q Consensus 44 kkLILIDEVD~LfeeDrGf~~AL~~LiekTKrPIILTCND~n~----~Lpkllsr----l~IrFkrPs~~eI~srL~~Ic 115 (712)
..+|++||+|.+.. ++..+-.+...+...+++||++++..++ ..+++++| ..+.+++|+.+....+|+..+
T Consensus 88 ~~~l~iDDi~~~~~-~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 88 EGPVLIEDIDAGGF-DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred cCeEEEECCCCCCC-CHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 46999999998843 3333444444444556789999987542 35667777 679999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Q 005137 116 AAEKVELQQHLLVQLIESCRADIRKTIMHLQ 146 (712)
Q Consensus 116 ~~EGikId~~~L~~LI~~S~GDIRqaLN~LQ 146 (712)
..+|+.+++++++.|++.+.+|+|.++..|.
T Consensus 167 ~~~~~~l~~ev~~~La~~~~r~~~~l~~~l~ 197 (226)
T PRK09087 167 ADRQLYVDPHVVYYLVSRMERSLFAAQTIVD 197 (226)
T ss_pred HHcCCCCCHHHHHHHHHHhhhhHHHHHHHHH
Confidence 9999999999999999999999999986443
No 65
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=98.14 E-value=2.1e-05 Score=80.70 Aligned_cols=132 Identities=9% Similarity=0.031 Sum_probs=99.7
Q ss_pred CCcEEEEeCCCcc-cc--cccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCCC--CCc
Q 005137 17 DDEVVEVIHIPDD-EN--SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNI--TLP 89 (712)
Q Consensus 17 GydVIELNASDdR-~r--n~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n~--~Lp 89 (712)
.++++.+++.+.. .. ......++++ .+++|++++++.+...+ .+.+|.++++. ....+|++++.... .+.
T Consensus 18 ~~~~~~~~~~e~~~~~l~~~~~~~slf~-~~kliii~~~~~~~~~~--~~~~L~~~l~~~~~~~~~i~~~~~~~~~~~~~ 94 (302)
T TIGR01128 18 EFNVFRIDGEEFDWNQLLEEAQTLPLFS-ERRLVELRNPEGKPGAK--GLKALEEYLANPPPDTLLLIEAPKLDKRKKLT 94 (302)
T ss_pred hheeeeeccCCCCHHHHHHHhhccCccc-CCeEEEEECCCCCCCHH--HHHHHHHHHhcCCCCEEEEEecCCCCHhHHHH
Confidence 5789999988633 21 1222334555 56999999999987432 36788888876 33458888875432 122
Q ss_pred cccc---c-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 005137 90 DSLD---R-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQN 151 (712)
Q Consensus 90 klls---r-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~s 151 (712)
+.+. + ..+.|.+|+..++..++..++.++|+.+++++++.|+..+++|+|.+.|.|+-.+..
T Consensus 95 k~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~l~~~~~~d~~~l~~el~KL~~~ 160 (302)
T TIGR01128 95 KWLKALKNAQIVECKTPKEQELPRWIQARLKKLGLRIDPDAVQLLAELVEGNLLAIAQELEKLALY 160 (302)
T ss_pred HHHHHhcCeeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHhh
Confidence 2232 4 678999999999999999999999999999999999999999999999999876654
No 66
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.14 E-value=1.7e-05 Score=83.97 Aligned_cols=136 Identities=10% Similarity=0.031 Sum_probs=96.1
Q ss_pred hhhHHHhhCCCcEEEEeCCCcccccccccccCC-CCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhcC------------
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDENSHGVMGKSD-NHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAK------------ 74 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~rn~~v~gsl~-~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekTK------------ 74 (712)
.+.++|+++|.++...++...... ....+.+. -....+|+|||||.+...-... +..+++...
T Consensus 67 la~~ia~~l~~~~~~~~~~~~~~~-~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~---l~~~~e~~~~~~~l~~~~~~~ 142 (328)
T PRK00080 67 LANIIANEMGVNIRITSGPALEKP-GDLAAILTNLEEGDVLFIDEIHRLSPVVEEI---LYPAMEDFRLDIMIGKGPAAR 142 (328)
T ss_pred HHHHHHHHhCCCeEEEecccccCh-HHHHHHHHhcccCCEEEEecHhhcchHHHHH---HHHHHHhcceeeeeccCcccc
Confidence 455789999999888877642211 00111011 1246799999999997642222 233333211
Q ss_pred --------CcEEEEecCCCCCCcccccc--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHH
Q 005137 75 --------GPVILTSNSNNITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMH 144 (712)
Q Consensus 75 --------rPIILTCND~n~~Lpkllsr--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~ 144 (712)
.-+|.++|......+++++| ..++|.+|+.+++...|...+...++.+++++++.|+..++||.|.+.+.
T Consensus 143 ~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~ 222 (328)
T PRK00080 143 SIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRL 222 (328)
T ss_pred ceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHH
Confidence 12566666655433445667 57899999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 005137 145 LQF 147 (712)
Q Consensus 145 LQf 147 (712)
|+.
T Consensus 223 l~~ 225 (328)
T PRK00080 223 LRR 225 (328)
T ss_pred HHH
Confidence 985
No 67
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=9.8e-06 Score=86.50 Aligned_cols=100 Identities=17% Similarity=0.255 Sum_probs=84.1
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhc-CCcEEEEecCCCCCCcccccc-eeeEEcCCCHHHHHHHHHHHHHHcCC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-KGPVILTSNSNNITLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKV 120 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekT-KrPIILTCND~n~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGi 120 (712)
+.+|+|||++|.|..+ +..||.++++.- +.-|||+|++....++.+++| ..|+|++|+.+++..+|..++..++.
T Consensus 124 ~~kVvII~~ae~m~~~---aaNaLLK~LEEPp~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~ 200 (314)
T PRK07399 124 PRKVVVIEDAETMNEA---AANALLKTLEEPGNGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL 200 (314)
T ss_pred CceEEEEEchhhcCHH---HHHHHHHHHhCCCCCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc
Confidence 6799999999999765 667899988842 234999999988888888999 88999999999999999998766655
Q ss_pred CCCHHHHHHHHHHcCCcHHHHHHHHHHH
Q 005137 121 ELQQHLLVQLIESCRADIRKTIMHLQFW 148 (712)
Q Consensus 121 kId~~~L~~LI~~S~GDIRqaLN~LQf~ 148 (712)
.. .+..++..++||.|++++.++.+
T Consensus 201 ~~---~~~~l~~~a~Gs~~~al~~l~~~ 225 (314)
T PRK07399 201 NI---NFPELLALAQGSPGAAIANIEQL 225 (314)
T ss_pred hh---HHHHHHHHcCCCHHHHHHHHHHH
Confidence 43 36788999999999999988754
No 68
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.12 E-value=1.8e-05 Score=77.89 Aligned_cols=130 Identities=14% Similarity=0.179 Sum_probs=89.7
Q ss_pred CCcEEEEeCCCcccccccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHH---HhcCCcEEEEecCCCCCC----c
Q 005137 17 DDEVVEVIHIPDDENSHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIA---EKAKGPVILTSNSNNITL----P 89 (712)
Q Consensus 17 GydVIELNASDdR~rn~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~Li---ekTKrPIILTCND~n~~L----p 89 (712)
|..++.+++++-..+.......+ .+..+|+|||+|.+.... +....|..++ ...+.+||+++|.....+ +
T Consensus 66 ~~~~~~i~~~~~~~~~~~~~~~~--~~~~lLvIDdi~~l~~~~-~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~ 142 (226)
T TIGR03420 66 GKSAIYLPLAELAQADPEVLEGL--EQADLVCLDDVEAIAGQP-EWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLP 142 (226)
T ss_pred CCcEEEEeHHHHHHhHHHHHhhc--ccCCEEEEeChhhhcCCh-HHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccH
Confidence 57788888766321100010111 234699999999986532 1223343333 334568999998643111 3
Q ss_pred ccccc----eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 005137 90 DSLDR----LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWC 149 (712)
Q Consensus 90 kllsr----l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s 149 (712)
.+.++ ..|++.+|+..++..+|..++.+.|+.+++++++.|+..+.|++|...+.|+-.-
T Consensus 143 ~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~~~ 206 (226)
T TIGR03420 143 DLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALD 206 (226)
T ss_pred HHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 33444 4688999999999999999999999999999999999999999999999887543
No 69
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.95 E-value=5.2e-05 Score=77.93 Aligned_cols=135 Identities=11% Similarity=0.108 Sum_probs=90.2
Q ss_pred CcEEEEeCCCcccc-----cccccccCCCCCCcEEEEeCCCCCChh---h--HHHHHHHHHHHHhcCCcEEEEe-cCCC-
Q 005137 18 DEVVEVIHIPDDEN-----SHGVMGKSDNHVKPLILIEDVDVFFPE---D--RGFIAGIQQIAEKAKGPVILTS-NSNN- 85 (712)
Q Consensus 18 ydVIELNASDdR~r-----n~~v~gsl~~~kkkLILIDEVD~Lfee---D--rGf~~AL~~LiekTKrPIILTC-ND~n- 85 (712)
..++|+++++-.+. .......+......+|+|||||.|..+ + +..+.+|.+.++..+.++++|. +...
T Consensus 75 ~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~ 154 (261)
T TIGR02881 75 GHLIEVERADLVGEYIGHTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDE 154 (261)
T ss_pred CceEEecHHHhhhhhccchHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcch
Confidence 46888888763221 000111121223579999999999753 1 2245666666666555554443 2211
Q ss_pred --C---CCcccccc--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----------cCCcHHHHHHHHHHH
Q 005137 86 --I---TLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIES----------CRADIRKTIMHLQFW 148 (712)
Q Consensus 86 --~---~Lpkllsr--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~----------S~GDIRqaLN~LQf~ 148 (712)
. .-|.+.+| ..|.|..++.+++...++.++...++.++++++..|.+. +.||.|.+.|.++..
T Consensus 155 ~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a 234 (261)
T TIGR02881 155 MDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKA 234 (261)
T ss_pred hHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence 1 12345566 579999999999999999999999999999999888543 469999999999886
Q ss_pred hhcC
Q 005137 149 CQNK 152 (712)
Q Consensus 149 s~s~ 152 (712)
....
T Consensus 235 ~~~~ 238 (261)
T TIGR02881 235 IRRQ 238 (261)
T ss_pred HHHH
Confidence 5443
No 70
>PRK05642 DNA replication initiation factor; Validated
Probab=97.90 E-value=0.00012 Score=74.67 Aligned_cols=105 Identities=15% Similarity=0.188 Sum_probs=81.9
Q ss_pred CcEEEEeCCCCCChhhHHHHHHHHHHHH---hcCCcEEEEecCCCC----CCcccccc----eeeEEcCCCHHHHHHHHH
Q 005137 44 KPLILIEDVDVFFPEDRGFIAGIQQIAE---KAKGPVILTSNSNNI----TLPDSLDR----LEVSFTMPMPKDLLSHLQ 112 (712)
Q Consensus 44 kkLILIDEVD~LfeeDrGf~~AL~~Lie---kTKrPIILTCND~n~----~Lpkllsr----l~IrFkrPs~~eI~srL~ 112 (712)
-.+++|||++.+... .....++-.+++ ..++++|++++..++ ..+++++| ..+.+.+|+.+.....|+
T Consensus 98 ~d~LiiDDi~~~~~~-~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 98 YELVCLDDLDVIAGK-ADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred CCEEEEechhhhcCC-hHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 368999999987542 222233444443 345789999987532 24677777 578899999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 005137 113 MICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWC 149 (712)
Q Consensus 113 ~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s 149 (712)
.-|...|+.+++++++.|++...+|+|..++.|+..-
T Consensus 177 ~ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l~ 213 (234)
T PRK05642 177 LRASRRGLHLTDEVGHFILTRGTRSMSALFDLLERLD 213 (234)
T ss_pred HHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 7788889999999999999999999999999998764
No 71
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.89 E-value=3.9e-05 Score=84.53 Aligned_cols=96 Identities=15% Similarity=0.161 Sum_probs=79.0
Q ss_pred CCCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCcEEEEecCCCCCCcccccc-eeeEEcCCCHHHHHHHHHHHHHHc
Q 005137 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNNITLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAE 118 (712)
Q Consensus 42 ~kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrPIILTCND~n~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~E 118 (712)
.+.+|+||||+|.|..+ ...+|.++++.. ...+|++|++....+|.+++| ..++|++|+.+++..+|. ..+
T Consensus 116 ~~~kViiIDead~m~~~---aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~---~~~ 189 (394)
T PRK07940 116 GRWRIVVIEDADRLTER---AANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLV---RRD 189 (394)
T ss_pred CCcEEEEEechhhcCHH---HHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHH---Hhc
Confidence 35789999999999765 457888888873 456999999987767778888 889999999999988887 233
Q ss_pred CCCCCHHHHHHHHHHcCCcHHHHHHHH
Q 005137 119 KVELQQHLLVQLIESCRADIRKTIMHL 145 (712)
Q Consensus 119 GikId~~~L~~LI~~S~GDIRqaLN~L 145 (712)
| ++++.+..++..++|++++++..+
T Consensus 190 ~--~~~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 190 G--VDPETARRAARASQGHIGRARRLA 214 (394)
T ss_pred C--CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 4 678889999999999999987554
No 72
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.82 E-value=8.1e-05 Score=82.47 Aligned_cols=140 Identities=16% Similarity=0.213 Sum_probs=96.3
Q ss_pred hhHHHhhC-----CCcEEEEeCCCcccc--ccc-------ccccCCCCCCcEEEEeCCCCCChhh---HHHHHHHHHHHH
Q 005137 9 LCEAAQHA-----DDEVVEVIHIPDDEN--SHG-------VMGKSDNHVKPLILIEDVDVFFPED---RGFIAGIQQIAE 71 (712)
Q Consensus 9 ~~aIAkel-----GydVIELNASDdR~r--n~~-------v~gsl~~~kkkLILIDEVD~LfeeD---rGf~~AL~~Lie 71 (712)
+.++|+++ |..|+.+++.+-... ... +...+ ....+|+|||+|.+...+ .-+...+..+.+
T Consensus 165 ~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~ 242 (450)
T PRK00149 165 LHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKY--RSVDVLLIDDIQFLAGKERTQEEFFHTFNALHE 242 (450)
T ss_pred HHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHH--hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHH
Confidence 34555554 677888888662211 000 00111 135799999999986532 234444555555
Q ss_pred hcCCcEEEEecCCCCC----Ccccccc----eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHH---
Q 005137 72 KAKGPVILTSNSNNIT----LPDSLDR----LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRK--- 140 (712)
Q Consensus 72 kTKrPIILTCND~n~~----Lpkllsr----l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRq--- 140 (712)
. ..+||+++|..... -+++.+| ..+.|.+|+.+.....|+..+...|+.+++++++.|+..+.+|+|.
T Consensus 243 ~-~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~ 321 (450)
T PRK00149 243 A-GKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEG 321 (450)
T ss_pred C-CCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHH
Confidence 4 45799999875321 2345566 4799999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhhc
Q 005137 141 TIMHLQFWCQN 151 (712)
Q Consensus 141 aLN~LQf~s~s 151 (712)
+|+.|.+++..
T Consensus 322 ~l~~l~~~~~~ 332 (450)
T PRK00149 322 ALNRLIAYASL 332 (450)
T ss_pred HHHHHHHHHHh
Confidence 55566655543
No 73
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.78 E-value=0.00023 Score=77.61 Aligned_cols=140 Identities=20% Similarity=0.234 Sum_probs=96.6
Q ss_pred hhHHHhhC-----CCcEEEEeCCCcccc--ccc-------ccccCCCCCCcEEEEeCCCCCChhh---HHHHHHHHHHHH
Q 005137 9 LCEAAQHA-----DDEVVEVIHIPDDEN--SHG-------VMGKSDNHVKPLILIEDVDVFFPED---RGFIAGIQQIAE 71 (712)
Q Consensus 9 ~~aIAkel-----GydVIELNASDdR~r--n~~-------v~gsl~~~kkkLILIDEVD~LfeeD---rGf~~AL~~Lie 71 (712)
+.++|+++ |..|+-+++.+-... ... +...+ ....+|+|||+|.+...+ .-+...+..+.+
T Consensus 153 ~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~ 230 (405)
T TIGR00362 153 LHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKY--RSVDLLLIDDIQFLAGKERTQEEFFHTFNALHE 230 (405)
T ss_pred HHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHH--HhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHH
Confidence 34555544 678899988662110 000 00111 124699999999986531 224444444444
Q ss_pred hcCCcEEEEecCCCC----CCcccccc----eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHH---
Q 005137 72 KAKGPVILTSNSNNI----TLPDSLDR----LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRK--- 140 (712)
Q Consensus 72 kTKrPIILTCND~n~----~Lpkllsr----l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRq--- 140 (712)
. .+++|+++|.... ..+++++| ..+.|.+|+.++....|+..+...|+.+++++++.|+....+|+|.
T Consensus 231 ~-~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~ 309 (405)
T TIGR00362 231 N-GKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEG 309 (405)
T ss_pred C-CCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHH
Confidence 3 4689999986421 22445566 4799999999999999999999999999999999999999999997
Q ss_pred HHHHHHHHhhc
Q 005137 141 TIMHLQFWCQN 151 (712)
Q Consensus 141 aLN~LQf~s~s 151 (712)
+|+.|.+++..
T Consensus 310 ~l~~l~~~a~~ 320 (405)
T TIGR00362 310 ALNRLLAYASL 320 (405)
T ss_pred HHHHHHHHHHH
Confidence 66677766654
No 74
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.75 E-value=9.1e-05 Score=78.41 Aligned_cols=107 Identities=20% Similarity=0.179 Sum_probs=74.4
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHh-----cCCcEEEEecCCCC---CCcccccc---eeeEEcCCCHHHHHHHH
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK-----AKGPVILTSNSNNI---TLPDSLDR---LEVSFTMPMPKDLLSHL 111 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~Liek-----TKrPIILTCND~n~---~Lpkllsr---l~IrFkrPs~~eI~srL 111 (712)
++.+|||||+|.+...+...+..|.++... .+..+|+++|+... ..++..++ ..|.|.+++.+++..+|
T Consensus 129 ~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il 208 (365)
T TIGR02928 129 DSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDIL 208 (365)
T ss_pred CeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHH
Confidence 356899999999975455555566555211 45678999998642 12223333 46899999999999999
Q ss_pred HHHHHH--cCCCCCHHHHHH---HHHHcCCcHHHHHHHHHHHh
Q 005137 112 QMICAA--EKVELQQHLLVQ---LIESCRADIRKTIMHLQFWC 149 (712)
Q Consensus 112 ~~Ic~~--EGikId~~~L~~---LI~~S~GDIRqaLN~LQf~s 149 (712)
...+.. .+-.+++++++. ++..+.||+|++++.|....
T Consensus 209 ~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~ 251 (365)
T TIGR02928 209 ENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAG 251 (365)
T ss_pred HHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 988752 233477876655 45556799999999987644
No 75
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.74 E-value=0.00027 Score=71.66 Aligned_cols=103 Identities=23% Similarity=0.295 Sum_probs=72.1
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHH---hcCCcEEEEecCCCC----CCcccccc----eeeEEcCCCHHHHHHHH
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAE---KAKGPVILTSNSNNI----TLPDSLDR----LEVSFTMPMPKDLLSHL 111 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~Lie---kTKrPIILTCND~n~----~Lpkllsr----l~IrFkrPs~~eI~srL 111 (712)
.-.+++|||+|.+... .....++-.+++ ....|||++++.... ..+++.+| ..+.+.+|+.+.....|
T Consensus 97 ~~DlL~iDDi~~l~~~-~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il 175 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGK-QRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRIL 175 (219)
T ss_dssp TSSEEEEETGGGGTTH-HHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHH
T ss_pred cCCEEEEecchhhcCc-hHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHH
Confidence 4589999999999764 333344444333 345689999977532 23445566 68999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Q 005137 112 QMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQ 146 (712)
Q Consensus 112 ~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQ 146 (712)
+..+...|+.+++++++.|++...+|+|.....|.
T Consensus 176 ~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l~ 210 (219)
T PF00308_consen 176 QKKAKERGIELPEEVIEYLARRFRRDVRELEGALN 210 (219)
T ss_dssp HHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHHH
T ss_pred HHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHHH
Confidence 99999999999999999999999999997655554
No 76
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.69 E-value=0.00024 Score=79.46 Aligned_cols=106 Identities=16% Similarity=0.268 Sum_probs=83.5
Q ss_pred CCcEEEEeCCCCCChh---hHHHHHHHHHHHHhcCCcEEEEecCCCC----CCcccccc----eeeEEcCCCHHHHHHHH
Q 005137 43 VKPLILIEDVDVFFPE---DRGFIAGIQQIAEKAKGPVILTSNSNNI----TLPDSLDR----LEVSFTMPMPKDLLSHL 111 (712)
Q Consensus 43 kkkLILIDEVD~Lfee---DrGf~~AL~~LiekTKrPIILTCND~n~----~Lpkllsr----l~IrFkrPs~~eI~srL 111 (712)
...++||||++.+... ...+...+..+... ..+||+++|.... ..+++++| ..+.+.+|+.+....+|
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~-~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTE-GKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHC-CCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 4579999999998653 22334444444443 4689999987421 22445566 57899999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 005137 112 QMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWC 149 (712)
Q Consensus 112 ~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s 149 (712)
+..|...|+.+++++++.|+....+|+|+.++.|+..+
T Consensus 281 ~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~l~~l~ 318 (445)
T PRK12422 281 ERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLLA 318 (445)
T ss_pred HHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998774
No 77
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.68 E-value=0.00012 Score=87.59 Aligned_cols=105 Identities=14% Similarity=0.200 Sum_probs=77.9
Q ss_pred CcEEEEeCCCCCChhhHHHHHHHHHHHH-----hcCCcEEEEecCCCC---CCcccccc---eeeEEcCCCHHHHHHHHH
Q 005137 44 KPLILIEDVDVFFPEDRGFIAGIQQIAE-----KAKGPVILTSNSNNI---TLPDSLDR---LEVSFTMPMPKDLLSHLQ 112 (712)
Q Consensus 44 kkLILIDEVD~LfeeDrGf~~AL~~Lie-----kTKrPIILTCND~n~---~Lpkllsr---l~IrFkrPs~~eI~srL~ 112 (712)
..||||||||.|...++ .+|..|++ .++.=||.|+|+... ..+++.++ ..|.|.+++.+++...|.
T Consensus 870 v~IIILDEID~L~kK~Q---DVLYnLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk 946 (1164)
T PTZ00112 870 VSILIIDEIDYLITKTQ---KVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIK 946 (1164)
T ss_pred ceEEEeehHhhhCccHH---HHHHHHHHHhhccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHH
Confidence 35899999999986543 33444443 234457778888542 23555555 358999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHH---HcCCcHHHHHHHHHHHhhc
Q 005137 113 MICAAEKVELQQHLLVQLIE---SCRADIRKTIMHLQFWCQN 151 (712)
Q Consensus 113 ~Ic~~EGikId~~~L~~LI~---~S~GDIRqaLN~LQf~s~s 151 (712)
.-+....-.+++++|+.++. ...||+|+||..|......
T Consensus 947 ~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEi 988 (1164)
T PTZ00112 947 ERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFEN 988 (1164)
T ss_pred HHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhh
Confidence 88775445689999999988 6789999999999877654
No 78
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.68 E-value=0.00025 Score=80.81 Aligned_cols=104 Identities=13% Similarity=0.200 Sum_probs=80.7
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhc------------------------------CCcEEEEe-cCCCCCCccc
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA------------------------------KGPVILTS-NSNNITLPDS 91 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekT------------------------------KrPIILTC-ND~n~~Lpkl 91 (712)
.+.+|+|||||.|... .+..|.++++.- .+.+|++| |++....+.+
T Consensus 175 ~gG~L~IdEI~~L~~~---~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paL 251 (531)
T TIGR02902 175 HGGVLFIDEIGELHPV---QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPAL 251 (531)
T ss_pred CCcEEEEechhhCCHH---HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHH
Confidence 3579999999999775 344555555431 12355554 4444444566
Q ss_pred ccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 005137 92 LDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (712)
Q Consensus 92 lsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~ 150 (712)
++| ..|.|++++.+++...++..+.++|+.+++++++.|..++. |.|.++|.+|..+.
T Consensus 252 rsR~~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~-n~Rel~nll~~Aa~ 310 (531)
T TIGR02902 252 RSRCVEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYAS-NGREAVNIVQLAAG 310 (531)
T ss_pred hhhhheeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh-hHHHHHHHHHHHHH
Confidence 677 78999999999999999999999999999999998888775 99999999998764
No 79
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.65 E-value=0.00024 Score=77.63 Aligned_cols=98 Identities=12% Similarity=0.193 Sum_probs=79.5
Q ss_pred CCCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCcEEEEecCCCCCCcccccc-eeeEEcCCCHHHHHHHHHHHHHHc
Q 005137 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNNITLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAE 118 (712)
Q Consensus 42 ~kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrPIILTCND~n~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~E 118 (712)
...+||||||+|.|.. ....+|.++++.- .+-||++|++....++.+++| ..|+|.+|+.+++...|...
T Consensus 140 ~~~kVviIDead~m~~---~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~---- 212 (365)
T PRK07471 140 GGWRVVIVDTADEMNA---NAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAA---- 212 (365)
T ss_pred CCCEEEEEechHhcCH---HHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHh----
Confidence 4678999999999955 4667888888863 345999999987766667788 78999999999999888764
Q ss_pred CCCCCHHHHHHHHHHcCCcHHHHHHHHH
Q 005137 119 KVELQQHLLVQLIESCRADIRKTIMHLQ 146 (712)
Q Consensus 119 GikId~~~L~~LI~~S~GDIRqaLN~LQ 146 (712)
+...++..+..++..++|+.|+++..++
T Consensus 213 ~~~~~~~~~~~l~~~s~Gsp~~Al~ll~ 240 (365)
T PRK07471 213 GPDLPDDPRAALAALAEGSVGRALRLAG 240 (365)
T ss_pred cccCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence 3445666668899999999999998876
No 80
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.61 E-value=0.00016 Score=80.60 Aligned_cols=103 Identities=14% Similarity=0.202 Sum_probs=78.5
Q ss_pred CCcEEEEeCCCCCChhh---HHHHHHHHHHHHhcCCcEEEEecCCC----CCCcccccc----eeeEEcCCCHHHHHHHH
Q 005137 43 VKPLILIEDVDVFFPED---RGFIAGIQQIAEKAKGPVILTSNSNN----ITLPDSLDR----LEVSFTMPMPKDLLSHL 111 (712)
Q Consensus 43 kkkLILIDEVD~LfeeD---rGf~~AL~~LiekTKrPIILTCND~n----~~Lpkllsr----l~IrFkrPs~~eI~srL 111 (712)
...+|||||+|.+.+.. ..+...+..+.+.. .+||++++... ...+++.+| ..+.+.+|+.+.....|
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~-k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSG-KQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcC-CeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 36799999999885432 23555555555544 47899887432 112345555 58899999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Q 005137 112 QMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQ 146 (712)
Q Consensus 112 ~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQ 146 (712)
+..+..+|+.+++++++.|+....+|+|.....|.
T Consensus 273 ~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~ 307 (440)
T PRK14088 273 RKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAII 307 (440)
T ss_pred HHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHH
Confidence 99999999999999999999999999987665554
No 81
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.59 E-value=0.00038 Score=77.85 Aligned_cols=105 Identities=12% Similarity=0.158 Sum_probs=80.8
Q ss_pred CCcEEEEeCCCCCChhh---HHHHHHHHHHHHhcCCcEEEEecCCCC----CCcccccc----eeeEEcCCCHHHHHHHH
Q 005137 43 VKPLILIEDVDVFFPED---RGFIAGIQQIAEKAKGPVILTSNSNNI----TLPDSLDR----LEVSFTMPMPKDLLSHL 111 (712)
Q Consensus 43 kkkLILIDEVD~LfeeD---rGf~~AL~~LiekTKrPIILTCND~n~----~Lpkllsr----l~IrFkrPs~~eI~srL 111 (712)
...++||||++.+...+ ..+...+..+.. ...+||+++|.... .-+++.+| +.+.+.+|+.++...+|
T Consensus 206 ~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~-~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIE-NDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHH-cCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHH
Confidence 35799999999886421 223444444444 34589999987532 12445555 67899999999999999
Q ss_pred HHHHHHcCC--CCCHHHHHHHHHHcCCcHHHHHHHHHHH
Q 005137 112 QMICAAEKV--ELQQHLLVQLIESCRADIRKTIMHLQFW 148 (712)
Q Consensus 112 ~~Ic~~EGi--kId~~~L~~LI~~S~GDIRqaLN~LQf~ 148 (712)
+..+...|+ .+++++++.|+..+.||+|..++.|.-.
T Consensus 285 ~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 285 KKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 999999896 6999999999999999999999988654
No 82
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.58 E-value=0.00025 Score=74.83 Aligned_cols=96 Identities=10% Similarity=0.019 Sum_probs=78.8
Q ss_pred CCCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCcEEEEecCCCCCCcccccc-eeeEEcCCCHHHHHHHHHHHHHHc
Q 005137 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNNITLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAE 118 (712)
Q Consensus 42 ~kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrPIILTCND~n~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~E 118 (712)
.+++++|||++|.|..+ .+.+|.++++.. ...|||+|+++...++.+++| ..++|++|+.+++..+|.....
T Consensus 92 ~~~kv~iI~~ad~m~~~---a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~-- 166 (313)
T PRK05564 92 GDKKVIIIYNSEKMTEQ---AQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYN-- 166 (313)
T ss_pred CCceEEEEechhhcCHH---HHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhc--
Confidence 36899999999999765 677899998872 356999998887767777888 7899999999999988875432
Q ss_pred CCCCCHHHHHHHHHHcCCcHHHHHHH
Q 005137 119 KVELQQHLLVQLIESCRADIRKTIMH 144 (712)
Q Consensus 119 GikId~~~L~~LI~~S~GDIRqaLN~ 144 (712)
.++++.++.++..++|...+++..
T Consensus 167 --~~~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 167 --DIKEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred --CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 577888999999999988877644
No 83
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.57 E-value=0.00024 Score=76.54 Aligned_cols=96 Identities=16% Similarity=0.198 Sum_probs=80.0
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCCCCCcccccc-eeeEEcCCCHHHHHHHHHHHHHHcC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEK 119 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EG 119 (712)
+.+|+|||++|.|..+ +..+|.++++. .+..|||+|++....+|.+++| ..++|++|+.+++..+|...+
T Consensus 106 ~~kv~iI~~a~~m~~~---aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~---- 178 (328)
T PRK05707 106 GRKVVLIEPAEAMNRN---AANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL---- 178 (328)
T ss_pred CCeEEEECChhhCCHH---HHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc----
Confidence 5789999999999875 66789999988 5678999999998878888999 789999999999999997542
Q ss_pred CCCCHHHHHHHHHHcCCcHHHHHHHH
Q 005137 120 VELQQHLLVQLIESCRADIRKTIMHL 145 (712)
Q Consensus 120 ikId~~~L~~LI~~S~GDIRqaLN~L 145 (712)
-..+++....++..++|...+++..+
T Consensus 179 ~~~~~~~~~~~l~la~Gsp~~A~~l~ 204 (328)
T PRK05707 179 PESDERERIELLTLAGGSPLRALQLH 204 (328)
T ss_pred ccCChHHHHHHHHHcCCCHHHHHHHH
Confidence 13467777788899999999887654
No 84
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.48 E-value=0.0004 Score=74.79 Aligned_cols=94 Identities=12% Similarity=0.177 Sum_probs=78.4
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCcEEEEecCCCCCCcccccc-eeeEEcCCCHHHHHHHHHHHHHHcC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNNITLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEK 119 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrPIILTCND~n~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EG 119 (712)
+.+|+|||++|.|..+ +..||.++++.- ++.|||+|+.....+|.+++| ..++|.+|+.+++..+|.. .|
T Consensus 113 ~~kV~iI~~ae~m~~~---AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~----~~ 185 (319)
T PRK08769 113 IAQVVIVDPADAINRA---ACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLA----QG 185 (319)
T ss_pred CcEEEEeccHhhhCHH---HHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHH----cC
Confidence 5799999999999875 567888888874 678999999998888888999 7899999999999999864 34
Q ss_pred CCCCHHHHHHHHHHcCCcHHHHHHHH
Q 005137 120 VELQQHLLVQLIESCRADIRKTIMHL 145 (712)
Q Consensus 120 ikId~~~L~~LI~~S~GDIRqaLN~L 145 (712)
+++.....++..++|..-+++..+
T Consensus 186 --~~~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 186 --VSERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred --CChHHHHHHHHHcCCCHHHHHHHh
Confidence 556667777888999888887655
No 85
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.47 E-value=0.00053 Score=73.51 Aligned_cols=106 Identities=16% Similarity=0.160 Sum_probs=74.9
Q ss_pred CCcEEEEeCCCCCC-hhhHHHHHHHHHHHHh---cCCcEEEEecCCCC---CCcccccc---eeeEEcCCCHHHHHHHHH
Q 005137 43 VKPLILIEDVDVFF-PEDRGFIAGIQQIAEK---AKGPVILTSNSNNI---TLPDSLDR---LEVSFTMPMPKDLLSHLQ 112 (712)
Q Consensus 43 kkkLILIDEVD~Lf-eeDrGf~~AL~~Liek---TKrPIILTCND~n~---~Lpkllsr---l~IrFkrPs~~eI~srL~ 112 (712)
+..||+|||+|.+. ..+...+.++.+.... .+..||+++|+... .-++..++ ..|.|.+++.+++...|+
T Consensus 138 ~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~ 217 (394)
T PRK00411 138 RVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILK 217 (394)
T ss_pred CEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHH
Confidence 34689999999997 2233445555554443 24569999998642 11222222 578999999999999999
Q ss_pred HHHHHc--CCCCCHHHHHHHHHHc---CCcHHHHHHHHHHH
Q 005137 113 MICAAE--KVELQQHLLVQLIESC---RADIRKTIMHLQFW 148 (712)
Q Consensus 113 ~Ic~~E--GikId~~~L~~LI~~S---~GDIRqaLN~LQf~ 148 (712)
.-+... +-.+++++++.++..+ .||+|++++.|...
T Consensus 218 ~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a 258 (394)
T PRK00411 218 DRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRA 258 (394)
T ss_pred HHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 876542 2358999999888777 89999999998653
No 86
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=97.41 E-value=0.00046 Score=65.43 Aligned_cols=131 Identities=14% Similarity=0.119 Sum_probs=81.3
Q ss_pred CcEEEEeCCCcccc---cccccccCCCCCCcEEEEeCCCCCChh-hHHHHHHHHHHHHh--cCCcEEEEec-CCCC--CC
Q 005137 18 DEVVEVIHIPDDEN---SHGVMGKSDNHVKPLILIEDVDVFFPE-DRGFIAGIQQIAEK--AKGPVILTSN-SNNI--TL 88 (712)
Q Consensus 18 ydVIELNASDdR~r---n~~v~gsl~~~kkkLILIDEVD~Lfee-DrGf~~AL~~Liek--TKrPIILTCN-D~n~--~L 88 (712)
++++.+.++++-.. ......++++ .+++|++.++..+.+. ....+.++.++++. ..+.+|+.++ .... .+
T Consensus 30 ~~~~~~~~~~~~~~~l~~~~~s~slF~-~~klvii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~ 108 (172)
T PF06144_consen 30 FNVIVFDGSEDDIDELLEELQSPSLFG-DKKLVIIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKL 108 (172)
T ss_dssp EEEEE-STTS-HHH-HTTTSTTTTSSS-SEEEEEEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHH
T ss_pred ceEEEEccccCcHHHHHHHHhcCCccC-CCeEEEEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhH
Confidence 55677777663211 2233345555 5789999999444111 22345667777665 4566888888 3221 12
Q ss_pred cccccc--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 005137 89 PDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWC 149 (712)
Q Consensus 89 pkllsr--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s 149 (712)
.+.+.. ..+.|.+|...++..+++..+.+.|+.+++++++.|+...++|++.+.|.|+-.+
T Consensus 109 ~k~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~EleKL~ 171 (172)
T PF06144_consen 109 YKALKKQAIVIECKKPKEQELPRWIKERAKKNGLKIDPDAAQYLIERVGNDLSLLQNELEKLS 171 (172)
T ss_dssp HHHHTTTEEEEEE----TTTHHHHHHHHHHHTT-EE-HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHhcccceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 223333 6789999999999999999999999999999999999999999999999998765
No 87
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.41 E-value=0.00038 Score=75.21 Aligned_cols=96 Identities=14% Similarity=0.108 Sum_probs=80.8
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCCCCCcccccc-eeeEEcCCCHHHHHHHHHHHHHHcC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEK 119 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EG 119 (712)
+.+|+|||++|.|+.+ +..||.++++. .+.=|||+|+.+...+|.+++| ..++|++|+.+++..+|.. .
T Consensus 108 ~~kV~iI~~ae~m~~~---AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~-----~ 179 (334)
T PRK07993 108 GAKVVWLPDAALLTDA---AANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSR-----E 179 (334)
T ss_pred CceEEEEcchHhhCHH---HHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHH-----c
Confidence 6799999999999886 56788888886 3445999999988878888999 7799999999999998863 3
Q ss_pred CCCCHHHHHHHHHHcCCcHHHHHHHHH
Q 005137 120 VELQQHLLVQLIESCRADIRKTIMHLQ 146 (712)
Q Consensus 120 ikId~~~L~~LI~~S~GDIRqaLN~LQ 146 (712)
..++++.+..++..++|+.++++..++
T Consensus 180 ~~~~~~~a~~~~~la~G~~~~Al~l~~ 206 (334)
T PRK07993 180 VTMSQDALLAALRLSAGAPGAALALLQ 206 (334)
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence 357788888899999999999987764
No 88
>CHL00181 cbbX CbbX; Provisional
Probab=97.34 E-value=0.00064 Score=71.88 Aligned_cols=134 Identities=14% Similarity=0.138 Sum_probs=86.7
Q ss_pred cEEEEeCCCcccc----c-ccccccCCCCCCcEEEEeCCCCCChh------hHHHHHHHHHHHHhcC--CcEEEEecCCC
Q 005137 19 EVVEVIHIPDDEN----S-HGVMGKSDNHVKPLILIEDVDVFFPE------DRGFIAGIQQIAEKAK--GPVILTSNSNN 85 (712)
Q Consensus 19 dVIELNASDdR~r----n-~~v~gsl~~~kkkLILIDEVD~Lfee------DrGf~~AL~~LiekTK--rPIILTCND~n 85 (712)
.++|+++++-... . ....+.+....+.+|+|||+|.++.. .+..+..|.++++... +-||++.+...
T Consensus 93 ~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~ 172 (287)
T CHL00181 93 HLLTVTRDDLVGQYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDR 172 (287)
T ss_pred ceEEecHHHHHHHHhccchHHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHH
Confidence 4899997662211 0 00011111123579999999998532 1234456666665432 22444433211
Q ss_pred --C---CCcccccc--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--------cCCcHHHHHHHHHHHhh
Q 005137 86 --I---TLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIES--------CRADIRKTIMHLQFWCQ 150 (712)
Q Consensus 86 --~---~Lpkllsr--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~--------S~GDIRqaLN~LQf~s~ 150 (712)
. .-|.+.+| ..|.|..++.+++...+..++..++..++++.+..+... ..|+.|.+-|.++....
T Consensus 173 ~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~ 252 (287)
T CHL00181 173 MDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARM 252 (287)
T ss_pred HHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 0 11445566 679999999999999999999999999999988887774 34789999998887665
Q ss_pred cC
Q 005137 151 NK 152 (712)
Q Consensus 151 s~ 152 (712)
.+
T Consensus 253 ~~ 254 (287)
T CHL00181 253 RQ 254 (287)
T ss_pred HH
Confidence 44
No 89
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.28 E-value=0.00084 Score=71.96 Aligned_cols=93 Identities=22% Similarity=0.295 Sum_probs=72.8
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCCCCCcccccc-eeeEEcCCCHHHHHHHHHHHHHHcC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEK 119 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EG 119 (712)
.++++||||+|.|..+ ...+|.++++. ..+=+||+|+++...++.+++| ..++|++|+.+++..+|. .+|
T Consensus 110 ~~kvviI~~a~~~~~~---a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~----~~g 182 (329)
T PRK08058 110 NKKVYIIEHADKMTAS---AANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQ----EEG 182 (329)
T ss_pred CceEEEeehHhhhCHH---HHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHH----HcC
Confidence 5799999999999875 55789999986 4455999999988777778899 889999999999977775 467
Q ss_pred CCCCHHHHHHHHHHcCCcHHHHHHHH
Q 005137 120 VELQQHLLVQLIESCRADIRKTIMHL 145 (712)
Q Consensus 120 ikId~~~L~~LI~~S~GDIRqaLN~L 145 (712)
+++.....++.. .|++++++..+
T Consensus 183 --i~~~~~~~l~~~-~g~~~~A~~l~ 205 (329)
T PRK08058 183 --ISESLATLLAGL-TNSVEEALALS 205 (329)
T ss_pred --CChHHHHHHHHH-cCCHHHHHHHh
Confidence 555555455554 47898888654
No 90
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.26 E-value=0.0011 Score=78.63 Aligned_cols=128 Identities=17% Similarity=0.163 Sum_probs=85.9
Q ss_pred ChhhHHHhhCCCcEEEEeCCCccc-------ccccc---cccC------CCCCCcEEEEeCCCCCChhhHH-HHHHHHHH
Q 005137 7 VSLCEAAQHADDEVVEVIHIPDDE-------NSHGV---MGKS------DNHVKPLILIEDVDVFFPEDRG-FIAGIQQI 69 (712)
Q Consensus 7 ~~~~aIAkelGydVIELNASDdR~-------rn~~v---~gsl------~~~kkkLILIDEVD~LfeeDrG-f~~AL~~L 69 (712)
..+.++|+.+|..++.++++..+. +..++ .|.+ .+..+.||||||+|.+..+.+| -.++|.++
T Consensus 362 ~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~~ 441 (775)
T TIGR00763 362 SLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLEV 441 (775)
T ss_pred HHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHHh
Confidence 356789999999999999875321 01111 1111 1234569999999999764322 23566666
Q ss_pred HHh-----------------cCCcEEEEecCCCCCCcccccc-eeeEEcCCCHHHHHHHHHHHH-----H-----HcCCC
Q 005137 70 AEK-----------------AKGPVILTSNSNNITLPDSLDR-LEVSFTMPMPKDLLSHLQMIC-----A-----AEKVE 121 (712)
Q Consensus 70 iek-----------------TKrPIILTCND~n~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic-----~-----~EGik 121 (712)
+.. ++..||+|+|.....-+.+++| ..|.|..|+.++....+.... . .+++.
T Consensus 442 ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~ 521 (775)
T TIGR00763 442 LDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELK 521 (775)
T ss_pred cCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEE
Confidence 542 4667889999976544567788 678999999877666554432 2 23568
Q ss_pred CCHHHHHHHHHHc
Q 005137 122 LQQHLLVQLIESC 134 (712)
Q Consensus 122 Id~~~L~~LI~~S 134 (712)
++++++..|++..
T Consensus 522 ~~~~~l~~i~~~~ 534 (775)
T TIGR00763 522 ITDEALLLLIKYY 534 (775)
T ss_pred ECHHHHHHHHHhc
Confidence 9999999999853
No 91
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.12 E-value=0.002 Score=69.71 Aligned_cols=95 Identities=12% Similarity=0.118 Sum_probs=75.7
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCCCCCcccccc-eeeEEcCCCHHHHHHHHHHHHHHcC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEK 119 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EG 119 (712)
+.+++|||++|.|+.+ +..||.++++. .+.=|||+|+.+...+|.+++| ..++|++|+.+++..+|...+.
T Consensus 107 ~~KV~iI~~a~~m~~~---AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~--- 180 (325)
T PRK06871 107 GNKVVYIQGAERLTEA---AANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSS--- 180 (325)
T ss_pred CceEEEEechhhhCHH---HHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhc---
Confidence 5799999999999875 56788888886 3345999999988878888999 8899999999999999987642
Q ss_pred CCCCHHHHHHHHHHcCCcHHHHHHHH
Q 005137 120 VELQQHLLVQLIESCRADIRKTIMHL 145 (712)
Q Consensus 120 ikId~~~L~~LI~~S~GDIRqaLN~L 145 (712)
.++..+..++..++|..-.++..+
T Consensus 181 --~~~~~~~~~~~l~~g~p~~A~~~~ 204 (325)
T PRK06871 181 --AEISEILTALRINYGRPLLALTFL 204 (325)
T ss_pred --cChHHHHHHHHHcCCCHHHHHHHh
Confidence 334456666777888777776554
No 92
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.11 E-value=0.0041 Score=72.38 Aligned_cols=103 Identities=16% Similarity=0.140 Sum_probs=78.1
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhc----------------------------CCcEEEEecC---CCCCCccc
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA----------------------------KGPVILTSNS---NNITLPDS 91 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekT----------------------------KrPIILTCND---~n~~Lpkl 91 (712)
...+|+|||++.|... .+..|.++++.. ...+|+|+.. .....+.+
T Consensus 265 sgGvL~LDEi~~Ld~~---~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aL 341 (615)
T TIGR02903 265 HGGVLFIDEIGELDPL---LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPAL 341 (615)
T ss_pred CCCeEEEeccccCCHH---HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHH
Confidence 3579999999999554 455666666542 2247777533 33233445
Q ss_pred ccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q 005137 92 LDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWC 149 (712)
Q Consensus 92 lsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s 149 (712)
++| ..+.|.+++.+++...+..++.++++.+++++++.|..++. |.|+++|.|+-.+
T Consensus 342 rSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys~-~gRraln~L~~~~ 399 (615)
T TIGR02903 342 RSRCAEVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIARYTI-EGRKAVNILADVY 399 (615)
T ss_pred HhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCC-cHHHHHHHHHHHH
Confidence 667 67899999999999999999999999999999988888765 8899999998654
No 93
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=97.10 E-value=0.0052 Score=64.47 Aligned_cols=131 Identities=11% Similarity=0.072 Sum_probs=88.4
Q ss_pred CCcEEEEeCCCcc-cc--cccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhc---CCc-EEEE-e-cCCCC-
Q 005137 17 DDEVVEVIHIPDD-EN--SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA---KGP-VILT-S-NSNNI- 86 (712)
Q Consensus 17 GydVIELNASDdR-~r--n~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekT---KrP-IILT-C-ND~n~- 86 (712)
.++++.+.+.+.. .. ......++++ .+++|++++++.+.... ...++..+.+.. .-+ +|++ . +..+.
T Consensus 48 ~~~~~~~d~~~~~~~~l~~~~~t~~lF~-~~klvii~~~~~l~~~~--~~~~l~~l~~~l~~~~~~~~~li~~~~~~~~~ 124 (340)
T PRK05574 48 ERNVFTFDGSETDWDDVLEACQSLPLFS-DRKLVELRLPEFLTGAK--GEKALKRLEAYLNPLPHPDLLLIVRLPKLDKA 124 (340)
T ss_pred eeeEEEeecCCCCHHHHHHHhhccCccc-cCeEEEEECCCCCCchh--HHHHHHHHHHhccCCCCCcEEEEEECCcCCHH
Confidence 4567777776432 11 2223344555 57899999999886532 223444444421 111 3333 3 33221
Q ss_pred -CC---cccccc--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 005137 87 -TL---PDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (712)
Q Consensus 87 -~L---pkllsr--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~ 150 (712)
.+ -+.+.. ..+.|.+++..++..++..++..+|+.+++++++.|++..++|++.+.|.|+-.+.
T Consensus 125 ~k~~k~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~El~KL~l 194 (340)
T PRK05574 125 KKKSAWFKALKKKAVVVEAQPPKEAELPQWIQQRLKQQGLQIDAAALQLLAERVEGNLLALAQELEKLAL 194 (340)
T ss_pred HHhhHHHHHHHhCceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 11 122332 67899999999999999999999999999999999999999999999999987664
No 94
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.10 E-value=0.0034 Score=73.16 Aligned_cols=103 Identities=14% Similarity=0.192 Sum_probs=80.4
Q ss_pred CcEEEEeCCCCCChh---hHHHHHHHHHHHHhcCCcEEEEecCCC----CCCcccccc----eeeEEcCCCHHHHHHHHH
Q 005137 44 KPLILIEDVDVFFPE---DRGFIAGIQQIAEKAKGPVILTSNSNN----ITLPDSLDR----LEVSFTMPMPKDLLSHLQ 112 (712)
Q Consensus 44 kkLILIDEVD~Lfee---DrGf~~AL~~LiekTKrPIILTCND~n----~~Lpkllsr----l~IrFkrPs~~eI~srL~ 112 (712)
..||||||+|.+... ...|...+..+.+. ..+||+++|... ...+++.+| +.+.+..|+.+.....|+
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~-gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNTLHNA-NKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHHHHhc-CCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 579999999999543 23344444554443 468999998752 223456666 688999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Q 005137 113 MICAAEKVELQQHLLVQLIESCRADIRKTIMHLQF 147 (712)
Q Consensus 113 ~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf 147 (712)
..+...|+.+++++++.|+....+|+|...-.|.-
T Consensus 457 kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL~r 491 (617)
T PRK14086 457 KKAVQEQLNAPPEVLEFIASRISRNIRELEGALIR 491 (617)
T ss_pred HHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 99999999999999999999999999987666553
No 95
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.05 E-value=0.0017 Score=72.01 Aligned_cols=129 Identities=14% Similarity=0.143 Sum_probs=86.2
Q ss_pred cChhhHHHhhCCCcEEEEeCCCccc-------c---cccccc--cC-CCCCCcEEEEeCCCCCChh---hHH-----HH-
Q 005137 6 TVSLCEAAQHADDEVVEVIHIPDDE-------N---SHGVMG--KS-DNHVKPLILIEDVDVFFPE---DRG-----FI- 63 (712)
Q Consensus 6 a~~~~aIAkelGydVIELNASDdR~-------r---n~~v~g--sl-~~~kkkLILIDEVD~Lfee---DrG-----f~- 63 (712)
.+.+.++|+++|..+|-++|++=-. + ..+... .. .+.++.||+|||+|.+... +++ .+
T Consensus 162 TllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~ 241 (413)
T PLN00020 162 SFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVN 241 (413)
T ss_pred HHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHH
Confidence 3567899999999999999987211 1 011000 00 1236789999999988643 111 11
Q ss_pred HHHHHHHH----------------hcCCcEEEEecCCCCCCccccc--ceeeEEcCCCHHHHHHHHHHHHHHcCCCCCHH
Q 005137 64 AGIQQIAE----------------KAKGPVILTSNSNNITLPDSLD--RLEVSFTMPMPKDLLSHLQMICAAEKVELQQH 125 (712)
Q Consensus 64 ~AL~~Lie----------------kTKrPIILTCND~n~~Lpklls--rl~IrFkrPs~~eI~srL~~Ic~~EGikId~~ 125 (712)
+.|..++. ...+|||.|+|+++..-+.++. |++-.|..|+.++-...|+.+++..++ +..
T Consensus 242 ~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i~lPd~e~R~eIL~~~~r~~~l--~~~ 319 (413)
T PLN00020 242 GTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVVHGIFRDDGV--SRE 319 (413)
T ss_pred HHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCceeCCCCHHHHHHHHHHHhccCCC--CHH
Confidence 34444431 2358999999998863344443 344456689999999999988888755 589
Q ss_pred HHHHHHHHcCC
Q 005137 126 LLVQLIESCRA 136 (712)
Q Consensus 126 ~L~~LI~~S~G 136 (712)
.+.+|+....|
T Consensus 320 dv~~Lv~~f~g 330 (413)
T PLN00020 320 DVVKLVDTFPG 330 (413)
T ss_pred HHHHHHHcCCC
Confidence 99999998754
No 96
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.01 E-value=0.0043 Score=64.61 Aligned_cols=135 Identities=10% Similarity=0.048 Sum_probs=89.2
Q ss_pred hhhHHHhhCCCcEEEEeCCCc-ccc--cccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhcCC---------
Q 005137 8 SLCEAAQHADDEVVEVIHIPD-DEN--SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKG--------- 75 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDd-R~r--n~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekTKr--------- 75 (712)
.+.+||+++|.++...+|..- +.. ..... .+ +.+.++++||++.+....+ ..|...++..+.
T Consensus 66 LA~IIA~e~~~~~~~~sg~~i~k~~dl~~il~-~l--~~~~ILFIDEIHRlnk~~q---e~LlpamEd~~idiiiG~g~~ 139 (233)
T PF05496_consen 66 LARIIANELGVNFKITSGPAIEKAGDLAAILT-NL--KEGDILFIDEIHRLNKAQQ---EILLPAMEDGKIDIIIGKGPN 139 (233)
T ss_dssp HHHHHHHHCT--EEEEECCC--SCHHHHHHHH-T----TT-EEEECTCCC--HHHH---HHHHHHHHCSEEEEEBSSSSS
T ss_pred HHHHHHhccCCCeEeccchhhhhHHHHHHHHH-hc--CCCcEEEEechhhccHHHH---HHHHHHhccCeEEEEeccccc
Confidence 577899999999999999642 111 11111 11 3568999999999987533 466777775322
Q ss_pred ---------c--EEEEecCCCCCCcccccc--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHH
Q 005137 76 ---------P--VILTSNSNNITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTI 142 (712)
Q Consensus 76 ---------P--IILTCND~n~~Lpkllsr--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaL 142 (712)
| +|-.++.....-.++++| ...++..-+.+++...+..-+..-|++|++++...|+..|+|+-|=+.
T Consensus 140 ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAn 219 (233)
T PF05496_consen 140 ARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIAN 219 (233)
T ss_dssp -BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHH
T ss_pred cceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHH
Confidence 2 333444444433446677 455788899999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 005137 143 MHLQFW 148 (712)
Q Consensus 143 N~LQf~ 148 (712)
+.|..+
T Consensus 220 rll~rv 225 (233)
T PF05496_consen 220 RLLRRV 225 (233)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998865
No 97
>PRK14700 recombination factor protein RarA; Provisional
Probab=96.94 E-value=0.0027 Score=68.21 Aligned_cols=64 Identities=11% Similarity=0.051 Sum_probs=56.6
Q ss_pred CCcccccc-eeeEEcCCCHHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 005137 87 TLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAE------KVELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (712)
Q Consensus 87 ~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~E------GikId~~~L~~LI~~S~GDIRqaLN~LQf~s~ 150 (712)
.-+.+++| .++.|++++.+++...|.+.+..+ .+.+++++++.|+..++||.|++||.|+....
T Consensus 23 vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GDaR~aLN~LE~a~~ 93 (300)
T PRK14700 23 LNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDCRKILNLLERMFL 93 (300)
T ss_pred ecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34668889 889999999999999999998753 36899999999999999999999999999654
No 98
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=96.94 E-value=0.0056 Score=65.14 Aligned_cols=127 Identities=10% Similarity=0.048 Sum_probs=92.0
Q ss_pred CcEEEEeCCCcc---cc--cccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCCC--CC
Q 005137 18 DEVVEVIHIPDD---EN--SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNI--TL 88 (712)
Q Consensus 18 ydVIELNASDdR---~r--n~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n~--~L 88 (712)
++++++.+.+.. .. +.....++++ .+++|++...+ ..+..+|..+++. ....+|+.+..... .+
T Consensus 52 fn~~~~~~~e~~~~~~~~~~~~~t~slF~-~~rlViv~~~~------~~~~~~L~~~l~~~~~~~~lil~~~~~~~~~kl 124 (343)
T PRK06585 52 FAVVRLDGDDLDADPARLEDEANAISLFG-GRRLIWVRAGS------KNLAAALKALLESPPGDAFIVIEAGDLKKGSSL 124 (343)
T ss_pred cceeeccHHHhhcCHHHHHHHHhCCCCCC-CceEEEEECCc------hhHHHHHHHHHcCCCCCcEEEEEcCCCCcccHH
Confidence 677777776532 11 2223345555 46799999542 3456788888876 23457777655432 22
Q ss_pred cccccc----eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 005137 89 PDSLDR----LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQN 151 (712)
Q Consensus 89 pkllsr----l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~s 151 (712)
.+.+.. ..+.|.+|+..++..++...|..+|+.|++++++.|++.+++|++.+.|.|+-++..
T Consensus 125 ~k~~~~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly 191 (343)
T PRK06585 125 RKLFETAAYAAAIPCYADDERDLARLIDDELAEAGLRITPDARALLVALLGGDRLASRNEIEKLALY 191 (343)
T ss_pred HHHHhcCCCeeEEecCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 233321 467899999999999999999999999999999999999999999999999977664
No 99
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.88 E-value=0.0011 Score=59.11 Aligned_cols=91 Identities=16% Similarity=0.172 Sum_probs=60.7
Q ss_pred hhhHHHhhCCCcEEEEeCCCcccc---------cccccccCCCCCCcEEEEeCCCCCChhh--------HHHHHHHHHHH
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDEN---------SHGVMGKSDNHVKPLILIEDVDVFFPED--------RGFIAGIQQIA 70 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~r---------n~~v~gsl~~~kkkLILIDEVD~LfeeD--------rGf~~AL~~Li 70 (712)
.+..+|+.+|+.++++++++.... ...+.......++.||+|||+|.++... +....+|...+
T Consensus 14 l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l 93 (132)
T PF00004_consen 14 LARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLL 93 (132)
T ss_dssp HHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccccccccccccccceeeecc
Confidence 456789999999999999984421 0111100001136899999999998764 45567777777
Q ss_pred HhcC-----CcEEEEecCCCCCCcccc-cceeeE
Q 005137 71 EKAK-----GPVILTSNSNNITLPDSL-DRLEVS 98 (712)
Q Consensus 71 ekTK-----rPIILTCND~n~~Lpkll-srl~Ir 98 (712)
.+.. +.||++||+.....+.++ +|...+
T Consensus 94 ~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~ 127 (132)
T PF00004_consen 94 DNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRR 127 (132)
T ss_dssp HTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEE
T ss_pred cccccccccceeEEeeCChhhCCHhHHhCCCcEE
Confidence 7643 589999999766555566 664333
No 100
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.0045 Score=68.17 Aligned_cols=147 Identities=18% Similarity=0.263 Sum_probs=103.3
Q ss_pred cChhhHHHhhCCCcEEEEeCCCcc----cc-cccccccC---CCCCCcEEEEeCCCCC--------ChhhHHHHHHHHHH
Q 005137 6 TVSLCEAAQHADDEVVEVIHIPDD----EN-SHGVMGKS---DNHVKPLILIEDVDVF--------FPEDRGFIAGIQQI 69 (712)
Q Consensus 6 a~~~~aIAkelGydVIELNASDdR----~r-n~~v~gsl---~~~kkkLILIDEVD~L--------feeDrGf~~AL~~L 69 (712)
++.+.|+|++-+..+|-+.+|.=. +- ...+..-+ ..+.+.+|+|||+|.+ +.+|+--++.+.++
T Consensus 199 TLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleL 278 (406)
T COG1222 199 TLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLEL 278 (406)
T ss_pred HHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHH
Confidence 578899999999999999999821 10 00010000 1246899999999999 23588888999999
Q ss_pred HHh-------cCCcEEEEecCCCCCCccccc--c--eeeEEcCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHH-cC
Q 005137 70 AEK-------AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKV--ELQQHLLVQLIES-CR 135 (712)
Q Consensus 70 iek-------TKrPIILTCND~n~~Lpklls--r--l~IrFkrPs~~eI~srL~~Ic~~EGi--kId~~~L~~LI~~-S~ 135 (712)
+.+ ..+-||+.+|.++..=|.++. | -.|.|..|+.+.=...|+-.+.+.++ .++-+.|..+... ++
T Consensus 279 L~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sG 358 (406)
T COG1222 279 LNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSG 358 (406)
T ss_pred HHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCch
Confidence 886 356799999998743344442 2 56899988877666666666666665 3566666666655 57
Q ss_pred CcHHHHHHHHHHHhhcC
Q 005137 136 ADIRKTIMHLQFWCQNK 152 (712)
Q Consensus 136 GDIRqaLN~LQf~s~s~ 152 (712)
.||+.+...--+++...
T Consensus 359 AdlkaictEAGm~AiR~ 375 (406)
T COG1222 359 ADLKAICTEAGMFAIRE 375 (406)
T ss_pred HHHHHHHHHHhHHHHHh
Confidence 79999888877777654
No 101
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.86 E-value=0.004 Score=65.65 Aligned_cols=134 Identities=11% Similarity=0.089 Sum_probs=88.2
Q ss_pred cEEEEeCCCcccc----c-ccccccCCCCCCcEEEEeCCCCCChh------hHHHHHHHHHHHHhcCC-cEEEEecCCCC
Q 005137 19 EVVEVIHIPDDEN----S-HGVMGKSDNHVKPLILIEDVDVFFPE------DRGFIAGIQQIAEKAKG-PVILTSNSNNI 86 (712)
Q Consensus 19 dVIELNASDdR~r----n-~~v~gsl~~~kkkLILIDEVD~Lfee------DrGf~~AL~~LiekTKr-PIILTCND~n~ 86 (712)
.++++++++-... . ..+.+.+....+.+|+|||+|.|... .+..+..|.++++..+. .+|+.+...+.
T Consensus 92 ~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 92 HLVSVTRDDLVGQYIGHTAPKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDR 171 (284)
T ss_pred eEEEecHHHHhHhhcccchHHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHH
Confidence 6999998652211 0 00011111223579999999988421 12235566777765432 23333333221
Q ss_pred ------CCcccccc--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--------cCCcHHHHHHHHHHHhh
Q 005137 87 ------TLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIES--------CRADIRKTIMHLQFWCQ 150 (712)
Q Consensus 87 ------~Lpkllsr--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~--------S~GDIRqaLN~LQf~s~ 150 (712)
.-|.+.+| ..|.|..++.+++...+...+...+..++++.+..+..+ ..|++|..-|.++.+..
T Consensus 172 ~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~ 251 (284)
T TIGR02880 172 MDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARL 251 (284)
T ss_pred HHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Confidence 11334455 579999999999999999999999999999999998775 45999999999998776
Q ss_pred cC
Q 005137 151 NK 152 (712)
Q Consensus 151 s~ 152 (712)
..
T Consensus 252 ~~ 253 (284)
T TIGR02880 252 RQ 253 (284)
T ss_pred HH
Confidence 54
No 102
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=96.83 E-value=0.0014 Score=72.43 Aligned_cols=130 Identities=15% Similarity=0.177 Sum_probs=87.5
Q ss_pred hhCCCcEEEEeCCCcccc--cccc---cc-cCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhcCCcEEEEe-cCCCC
Q 005137 14 QHADDEVVEVIHIPDDEN--SHGV---MG-KSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTS-NSNNI 86 (712)
Q Consensus 14 kelGydVIELNASDdR~r--n~~v---~g-sl~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekTKrPIILTC-ND~n~ 86 (712)
|.-.|.+||+.|...... ..++ +. ....+++++|+||||..+-...+ ..+...++... |+||- +..|+
T Consensus 187 k~~SyrfvelSAt~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQ---D~fLP~VE~G~--I~lIGATTENP 261 (554)
T KOG2028|consen 187 KKHSYRFVELSATNAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQ---DTFLPHVENGD--ITLIGATTENP 261 (554)
T ss_pred CCCceEEEEEeccccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhh---hcccceeccCc--eEEEecccCCC
Confidence 344577999999874321 0011 11 11235789999999999865432 23444555555 44443 22233
Q ss_pred C---Ccccccc-eeeEEcCCCHHHHHHHHHH-HH---HHcC---------CCCCHHHHHHHHHHcCCcHHHHHHHHHHH
Q 005137 87 T---LPDSLDR-LEVSFTMPMPKDLLSHLQM-IC---AAEK---------VELQQHLLVQLIESCRADIRKTIMHLQFW 148 (712)
Q Consensus 87 ~---Lpkllsr-l~IrFkrPs~~eI~srL~~-Ic---~~EG---------ikId~~~L~~LI~~S~GDIRqaLN~LQf~ 148 (712)
. .-.+++| .++.+.+.+.+++...|+. |+ ..|. +.+++.+|+.|+..+.||.|.+||.||..
T Consensus 262 SFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems 340 (554)
T KOG2028|consen 262 SFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMS 340 (554)
T ss_pred ccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 2 2346788 7889999999999999987 33 3333 35889999999999999999999999986
No 103
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.82 E-value=0.0038 Score=67.43 Aligned_cols=93 Identities=15% Similarity=0.167 Sum_probs=74.9
Q ss_pred CCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCCCCCcccccc-eeeEEcCCCHHHHHHHHHHHHHHc
Q 005137 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAE 118 (712)
Q Consensus 42 ~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~E 118 (712)
.+.+|+|||++|.|... +..||.++++. .+.=+||+|+++...+|.+++| ..++|.+|+.+++..+|.. +
T Consensus 107 ~~~kV~iI~~ae~m~~~---AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~----~ 179 (319)
T PRK06090 107 NGYRLFVIEPADAMNES---ASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKG----Q 179 (319)
T ss_pred CCceEEEecchhhhCHH---HHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHH----c
Confidence 35799999999999875 56788888886 2344999999998888889999 8899999999999998864 5
Q ss_pred CCCCCHHHHHHHHHHcCCcHHHHHHHH
Q 005137 119 KVELQQHLLVQLIESCRADIRKTIMHL 145 (712)
Q Consensus 119 GikId~~~L~~LI~~S~GDIRqaLN~L 145 (712)
|+. ....++..++|...+++..+
T Consensus 180 ~~~----~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 180 GIT----VPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred CCc----hHHHHHHHcCCCHHHHHHHh
Confidence 654 13456778889988887665
No 104
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=96.75 E-value=0.008 Score=63.42 Aligned_cols=134 Identities=12% Similarity=0.082 Sum_probs=91.0
Q ss_pred CCcEEEEeCCCccc--c--cccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecC-CCC--C
Q 005137 17 DDEVVEVIHIPDDE--N--SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNS-NNI--T 87 (712)
Q Consensus 17 GydVIELNASDdR~--r--n~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND-~n~--~ 87 (712)
.+++.++++.+... . .....-++++ .+++|++++++.+......++.+|.++++. ...-+|+++.+ ... .
T Consensus 32 ~fn~~~~d~~~~~~~~~~~~~~~t~pff~-~~rlVvv~~~~~~~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k 110 (326)
T PRK07452 32 SFNYSRLDGDDADQAIQALNEAMTPPFGS-GGRLVWLKNSPLCQGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLK 110 (326)
T ss_pred hcchhhcCCccchHHHHHHHHhcCCCCCC-CceEEEEeCchhhccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHH
Confidence 46778888776431 1 1111123333 578999999876543344567788888876 22235554433 221 1
Q ss_pred Ccccccc--eeeEEcCC---CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 005137 88 LPDSLDR--LEVSFTMP---MPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQN 151 (712)
Q Consensus 88 Lpkllsr--l~IrFkrP---s~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~s 151 (712)
+.+.+.. ....|..+ ..+++..+++..+.++|+.|++++++.|+...++|++.+.|.|+-.+.-
T Consensus 111 ~~k~l~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly 179 (326)
T PRK07452 111 STKLLQKLAEEKEFSLIPPWDTEGLKQLVERTAQELGVKLTPEAAELLAEAVGNDSRRLYNELEKLALY 179 (326)
T ss_pred HHHHHHHceeEEEecCCCcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCccHHHHHHHHHHHHHh
Confidence 2223332 45677665 3467999999999999999999999999999999999999999987664
No 105
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.60 E-value=0.0057 Score=67.15 Aligned_cols=145 Identities=16% Similarity=0.188 Sum_probs=91.3
Q ss_pred ChhhHHHhhCCCcEEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCChh--------hHHHHHHHHHHH
Q 005137 7 VSLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFPE--------DRGFIAGIQQIA 70 (712)
Q Consensus 7 ~~~~aIAkelGydVIELNASDdR~r-----n~~v~gsl---~~~kkkLILIDEVD~Lfee--------DrGf~~AL~~Li 70 (712)
..+.++|++++..++++++++-... .......+ ....+.+|+|||+|.++.. ++..+..+.+++
T Consensus 180 ~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL 259 (389)
T PRK03992 180 LLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLL 259 (389)
T ss_pred HHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHH
Confidence 4567899999999999999873211 00000000 1234679999999998532 344555666666
Q ss_pred Hh-------cCCcEEEEecCCCCCCccccc--c--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----cC
Q 005137 71 EK-------AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIES----CR 135 (712)
Q Consensus 71 ek-------TKrPIILTCND~n~~Lpklls--r--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~----S~ 135 (712)
.. .+..||+++|.+...-+.++. + ..|.|..|+.++-...++..+..-++.- +-.+..|+.. ++
T Consensus 260 ~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~-~~~~~~la~~t~g~sg 338 (389)
T PRK03992 260 AEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLAD-DVDLEELAELTEGASG 338 (389)
T ss_pred HhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCC-cCCHHHHHHHcCCCCH
Confidence 43 355688888886532222332 3 5799999999988888886665443321 1234444443 56
Q ss_pred CcHHHHHHHHHHHhhcC
Q 005137 136 ADIRKTIMHLQFWCQNK 152 (712)
Q Consensus 136 GDIRqaLN~LQf~s~s~ 152 (712)
+||+..+...-+.+...
T Consensus 339 adl~~l~~eA~~~a~~~ 355 (389)
T PRK03992 339 ADLKAICTEAGMFAIRD 355 (389)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 89999988877766543
No 106
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.56 E-value=0.01 Score=60.20 Aligned_cols=104 Identities=8% Similarity=0.032 Sum_probs=69.6
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCcEEEEecCC-----CC-CCcccccc--eeeEEcCCCHHHHHHHHH
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSN-----NI-TLPDSLDR--LEVSFTMPMPKDLLSHLQ 112 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrPIILTCND~-----n~-~Lpkllsr--l~IrFkrPs~~eI~srL~ 112 (712)
+..+|||||+|.+.......+..|..+.... ..+||++.... .. ....+.++ ..+.+.+.+.+++..++.
T Consensus 123 ~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~ 202 (269)
T TIGR03015 123 KRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREETREYIE 202 (269)
T ss_pred CCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHH
Confidence 4579999999999765433333333332112 23566766442 11 11122334 467899999999999999
Q ss_pred HHHHHcC----CCCCHHHHHHHHHHcCCcHHHHHHHHH
Q 005137 113 MICAAEK----VELQQHLLVQLIESCRADIRKTIMHLQ 146 (712)
Q Consensus 113 ~Ic~~EG----ikId~~~L~~LI~~S~GDIRqaLN~LQ 146 (712)
..+...| ..++++.++.|...++|+.|.+-....
T Consensus 203 ~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~ 240 (269)
T TIGR03015 203 HRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCD 240 (269)
T ss_pred HHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHH
Confidence 8887665 478999999999999999999443333
No 107
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.52 E-value=0.011 Score=64.65 Aligned_cols=93 Identities=14% Similarity=0.154 Sum_probs=73.4
Q ss_pred CCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCCCCCcccccc-eeeEEcCCCHHHHHHHHHHHHHHc
Q 005137 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAE 118 (712)
Q Consensus 42 ~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~E 118 (712)
.+.+|+|||++|.|..+ ...+|.++++. .+.-|||+++++...+|.+++| ..|+|++|+.+++..+|...
T Consensus 131 ~~~kV~iI~~ae~m~~~---AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~---- 203 (342)
T PRK06964 131 GGARVVVLYPAEALNVA---AANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ---- 203 (342)
T ss_pred CCceEEEEechhhcCHH---HHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc----
Confidence 35789999999999875 56788888886 3455999999998878888999 88999999999999999753
Q ss_pred CCCCCHHHHHHHHHHcCCcHHHHHHHH
Q 005137 119 KVELQQHLLVQLIESCRADIRKTIMHL 145 (712)
Q Consensus 119 GikId~~~L~~LI~~S~GDIRqaLN~L 145 (712)
|+ ++ .+.++..++|...+++..+
T Consensus 204 ~~--~~--~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 204 GV--AD--ADALLAEAGGAPLAALALA 226 (342)
T ss_pred CC--Ch--HHHHHHHcCCCHHHHHHHH
Confidence 33 33 2345667788888887554
No 108
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.51 E-value=0.0073 Score=66.96 Aligned_cols=145 Identities=17% Similarity=0.197 Sum_probs=92.7
Q ss_pred ChhhHHHhhCCCcEEEEeCCCcccc----c-ccccccC---CCCCCcEEEEeCCCCCCh--------hhHHHHHHHHHHH
Q 005137 7 VSLCEAAQHADDEVVEVIHIPDDEN----S-HGVMGKS---DNHVKPLILIEDVDVFFP--------EDRGFIAGIQQIA 70 (712)
Q Consensus 7 ~~~~aIAkelGydVIELNASDdR~r----n-~~v~gsl---~~~kkkLILIDEVD~Lfe--------eDrGf~~AL~~Li 70 (712)
+.+.++|++.+..++.+.+++-..+ . ..+...+ ....+.+|+|||+|.++. .|+...+.+.+++
T Consensus 194 ~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL 273 (398)
T PTZ00454 194 MLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELL 273 (398)
T ss_pred HHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHH
Confidence 3567899999999999988763211 0 0000000 123578999999999853 1444455666665
Q ss_pred Hh-------cCCcEEEEecCCCCCCccccc--c--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH----HcC
Q 005137 71 EK-------AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIE----SCR 135 (712)
Q Consensus 71 ek-------TKrPIILTCND~n~~Lpklls--r--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~----~S~ 135 (712)
.. ..+.||+++|.+...-+.++. | ..|.|..|+..+-...++.++.+.++.- +-.++.|+. .++
T Consensus 274 ~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~-dvd~~~la~~t~g~sg 352 (398)
T PTZ00454 274 NQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSE-EVDLEDFVSRPEKISA 352 (398)
T ss_pred HHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCc-ccCHHHHHHHcCCCCH
Confidence 53 345588888987643333332 3 6799999999988888887776655532 223444544 467
Q ss_pred CcHHHHHHHHHHHhhcC
Q 005137 136 ADIRKTIMHLQFWCQNK 152 (712)
Q Consensus 136 GDIRqaLN~LQf~s~s~ 152 (712)
.||+..++.....+...
T Consensus 353 aDI~~l~~eA~~~A~r~ 369 (398)
T PTZ00454 353 ADIAAICQEAGMQAVRK 369 (398)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 89999988877666544
No 109
>CHL00176 ftsH cell division protein; Validated
Probab=96.49 E-value=0.0098 Score=69.71 Aligned_cols=143 Identities=13% Similarity=0.105 Sum_probs=90.5
Q ss_pred ChhhHHHhhCCCcEEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCChh--------hHHHHHHHHHHH
Q 005137 7 VSLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFPE--------DRGFIAGIQQIA 70 (712)
Q Consensus 7 ~~~~aIAkelGydVIELNASDdR~r-----n~~v~gsl---~~~kkkLILIDEVD~Lfee--------DrGf~~AL~~Li 70 (712)
+.+.++|++.|..++.+++++-... ...+...+ ....+.+|+|||+|.+... +......|.+++
T Consensus 231 ~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL 310 (638)
T CHL00176 231 LLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLL 310 (638)
T ss_pred HHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHH
Confidence 4567899999999999999873211 00000000 1234679999999998531 122334555555
Q ss_pred Hh-------cCCcEEEEecCCCCCCccccc--c--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC---
Q 005137 71 EK-------AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRA--- 136 (712)
Q Consensus 71 ek-------TKrPIILTCND~n~~Lpklls--r--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~G--- 136 (712)
.. ..+-||.++|.....-+.++. | ..|.|..|+.++-...|+..+....+ .++..+..|+..+.|
T Consensus 311 ~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA~~t~G~sg 389 (638)
T CHL00176 311 TEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIARRTPGFSG 389 (638)
T ss_pred hhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHHhcCCCCCH
Confidence 32 233466677775421222332 2 67899999999988888887776332 345667888887665
Q ss_pred -cHHHHHHHHHHHhh
Q 005137 137 -DIRKTIMHLQFWCQ 150 (712)
Q Consensus 137 -DIRqaLN~LQf~s~ 150 (712)
||+..+|..-..+.
T Consensus 390 aDL~~lvneAal~a~ 404 (638)
T CHL00176 390 ADLANLLNEAAILTA 404 (638)
T ss_pred HHHHHHHHHHHHHHH
Confidence 99999997765543
No 110
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.49 E-value=0.016 Score=69.30 Aligned_cols=137 Identities=16% Similarity=0.176 Sum_probs=90.4
Q ss_pred hhhHHHhhCCCcEEEEeCCCcccc-------cccc---cccC------CCCCCcEEEEeCCCCCChhhHH-HHHHHHHHH
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDEN-------SHGV---MGKS------DNHVKPLILIEDVDVFFPEDRG-FIAGIQQIA 70 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~r-------n~~v---~gsl------~~~kkkLILIDEVD~LfeeDrG-f~~AL~~Li 70 (712)
....+|+.+|.+++.++.+..+.- ..+. .|.+ .+..+.||||||+|.+....+| ...+|.+++
T Consensus 365 l~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevl 444 (784)
T PRK10787 365 LGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVL 444 (784)
T ss_pred HHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHh
Confidence 456788899999999998774421 1111 1111 1224679999999999764333 357888887
Q ss_pred Hh-----------------cCCcEEEEecCCCCCCcccccc-eeeEEcCCCHHHHHHHHHHHH-----HHc-----CCCC
Q 005137 71 EK-----------------AKGPVILTSNSNNITLPDSLDR-LEVSFTMPMPKDLLSHLQMIC-----AAE-----KVEL 122 (712)
Q Consensus 71 ek-----------------TKrPIILTCND~n~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic-----~~E-----GikI 122 (712)
.. +++=+|+|+|..+ .-+++++| ..|+|..++.+++......-. .+. .+.+
T Consensus 445 d~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~-i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i 523 (784)
T PRK10787 445 DPEQNVAFSDHYLEVDYDLSDVMFVATSNSMN-IPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTV 523 (784)
T ss_pred ccccEEEEecccccccccCCceEEEEcCCCCC-CCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEE
Confidence 64 5666777777764 33456788 778999999877655544332 222 3578
Q ss_pred CHHHHHHHHHHc-----CCcHHHHHHHH
Q 005137 123 QQHLLVQLIESC-----RADIRKTIMHL 145 (712)
Q Consensus 123 d~~~L~~LI~~S-----~GDIRqaLN~L 145 (712)
++++++.|+..+ -+.+++.|..+
T Consensus 524 ~~~ai~~ii~~yt~e~GaR~LeR~I~~i 551 (784)
T PRK10787 524 DDSAIIGIIRYYTREAGVRSLEREISKL 551 (784)
T ss_pred CHHHHHHHHHhCCcccCCcHHHHHHHHH
Confidence 999999999753 34566666553
No 111
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.47 E-value=0.006 Score=69.37 Aligned_cols=143 Identities=13% Similarity=0.101 Sum_probs=87.5
Q ss_pred ChhhHHHhhCCCcEEEEeCCCcccc----c-ccccccC---CCCCCcEEEEeCCCCCChh-----hHHHHHH----HHHH
Q 005137 7 VSLCEAAQHADDEVVEVIHIPDDEN----S-HGVMGKS---DNHVKPLILIEDVDVFFPE-----DRGFIAG----IQQI 69 (712)
Q Consensus 7 ~~~~aIAkelGydVIELNASDdR~r----n-~~v~gsl---~~~kkkLILIDEVD~Lfee-----DrGf~~A----L~~L 69 (712)
+.+.++|+++|..++.++.++-..+ + ..+...+ ....+.+|+|||+|.++.+ |.|.... +...
T Consensus 274 llAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~ 353 (489)
T CHL00195 274 LTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITW 353 (489)
T ss_pred HHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHH
Confidence 4568899999999999998762211 0 0000000 1235789999999988652 4443332 2233
Q ss_pred HHh--cCCcEEEEecCCCCCCcc-ccc--c--eeeEEcCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHH----cCCc
Q 005137 70 AEK--AKGPVILTSNSNNITLPD-SLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVE-LQQHLLVQLIES----CRAD 137 (712)
Q Consensus 70 iek--TKrPIILTCND~n~~Lpk-lls--r--l~IrFkrPs~~eI~srL~~Ic~~EGik-Id~~~L~~LI~~----S~GD 137 (712)
+.. ..+.||.|+|++.. +++ ++. | ..|.|..|+.++-...++..+.+-+.. .++..++.|+.. ++.|
T Consensus 354 l~~~~~~V~vIaTTN~~~~-Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAd 432 (489)
T CHL00195 354 LSEKKSPVFVVATANNIDL-LPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAE 432 (489)
T ss_pred HhcCCCceEEEEecCChhh-CCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHH
Confidence 332 33456777888764 333 322 3 578899999887777777666654432 234445666654 6789
Q ss_pred HHHHHHHHHHHhh
Q 005137 138 IRKTIMHLQFWCQ 150 (712)
Q Consensus 138 IRqaLN~LQf~s~ 150 (712)
|++++..--..+.
T Consensus 433 I~~lv~eA~~~A~ 445 (489)
T CHL00195 433 IEQSIIEAMYIAF 445 (489)
T ss_pred HHHHHHHHHHHHH
Confidence 9999887655444
No 112
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.41 E-value=0.015 Score=62.36 Aligned_cols=94 Identities=13% Similarity=0.179 Sum_probs=72.0
Q ss_pred CCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCCCCCcccccc-eeeEEcCCCHHHHHHHHHHHHHHc
Q 005137 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAE 118 (712)
Q Consensus 42 ~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~E 118 (712)
..++++|||++|.|..+ ...+|.++++. ..+=+||+|+++...++.+++| ..++|++|+..++..+|..-
T Consensus 89 ~~~KvvII~~~e~m~~~---a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~---- 161 (299)
T PRK07132 89 SQKKILIIKNIEKTSNS---LLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK---- 161 (299)
T ss_pred CCceEEEEecccccCHH---HHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc----
Confidence 47899999999999764 55688888886 2334889999877767777888 78999999999999988742
Q ss_pred CCCCCHHHHHHHHHHcCCcHHHHHHHH
Q 005137 119 KVELQQHLLVQLIESCRADIRKTIMHL 145 (712)
Q Consensus 119 GikId~~~L~~LI~~S~GDIRqaLN~L 145 (712)
| ++++....++..++ ++.+++..+
T Consensus 162 ~--~~~~~a~~~a~~~~-~~~~a~~~~ 185 (299)
T PRK07132 162 N--KEKEYNWFYAYIFS-NFEQAEKYI 185 (299)
T ss_pred C--CChhHHHHHHHHcC-CHHHHHHHH
Confidence 3 66666666666666 488887654
No 113
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.30 E-value=0.011 Score=65.42 Aligned_cols=102 Identities=20% Similarity=0.298 Sum_probs=72.8
Q ss_pred CcEEEEeCCCCCChhhHHHHHHHHHHHHhcCCcEEEEecCC-----------CC-CCc-ccccc-eeeEEcCCCHHHHHH
Q 005137 44 KPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSN-----------NI-TLP-DSLDR-LEVSFTMPMPKDLLS 109 (712)
Q Consensus 44 kkLILIDEVD~LfeeDrGf~~AL~~LiekTKrPIILTCND~-----------n~-~Lp-kllsr-l~IrFkrPs~~eI~s 109 (712)
+.+++||||+-| |--...-|.+.++..-.|||+.+.++ ++ .+| .+++| +.|+-.+.+.+++..
T Consensus 279 pGVLFIDEvHmL---DiEcFsfLnralEs~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ei~~ 355 (398)
T PF06068_consen 279 PGVLFIDEVHML---DIECFSFLNRALESELSPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEEEIKQ 355 (398)
T ss_dssp E-EEEEESGGGS---BHHHHHHHHHHHTSTT--EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----HHHHHH
T ss_pred cceEEecchhhc---cHHHHHHHHHHhcCCCCcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCHHHHHH
Confidence 579999999999 66677888889999889987776552 11 233 35688 789999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-cCCcHHHHHHHHHHH
Q 005137 110 HLQMICAAEKVELQQHLLVQLIES-CRADIRKTIMHLQFW 148 (712)
Q Consensus 110 rL~~Ic~~EGikId~~~L~~LI~~-S~GDIRqaLN~LQf~ 148 (712)
.|..=|..|++++++++++.|... ...-+|.|++.|...
T Consensus 356 Il~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a 395 (398)
T PF06068_consen 356 ILKIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPA 395 (398)
T ss_dssp HHHHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHH
T ss_pred HHHhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhh
Confidence 999999999999999999999875 467799999887643
No 114
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.21 E-value=0.0041 Score=60.31 Aligned_cols=83 Identities=14% Similarity=0.151 Sum_probs=55.7
Q ss_pred CCcEEEEeCCCcc---cc-------cccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCcEEEEecCC
Q 005137 17 DDEVVEVIHIPDD---EN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSN 84 (712)
Q Consensus 17 GydVIELNASDdR---~r-------n~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrPIILTCND~ 84 (712)
..|+++++..... .. ....... ...+.+++||||+|.|+.+ ++.||.++++.- .+-+||+|++.
T Consensus 67 ~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~-~~~~~KviiI~~ad~l~~~---a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 67 HPDFIIIKPDKKKKSIKIDQIREIIEFLSLSP-SEGKYKVIIIDEADKLTEE---AQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS--TTSSSEEEEEETGGGS-HH---HHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred CcceEEEecccccchhhHHHHHHHHHHHHHHH-hcCCceEEEeehHhhhhHH---HHHHHHHHhcCCCCCEEEEEEECCh
Confidence 5678888876641 11 0111111 2246899999999999886 678999999974 56699999999
Q ss_pred CCCCcccccc-eeeEEcCCC
Q 005137 85 NITLPDSLDR-LEVSFTMPM 103 (712)
Q Consensus 85 n~~Lpkllsr-l~IrFkrPs 103 (712)
+..++.+++| ..++|++++
T Consensus 143 ~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 143 SKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GGS-HHHHTTSEEEEE----
T ss_pred HHChHHHHhhceEEecCCCC
Confidence 9888889999 889998753
No 115
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.16 E-value=0.012 Score=63.71 Aligned_cols=145 Identities=16% Similarity=0.214 Sum_probs=88.4
Q ss_pred ChhhHHHhhCCCcEEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCChh--------hHHHHHHHHHHH
Q 005137 7 VSLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFPE--------DRGFIAGIQQIA 70 (712)
Q Consensus 7 ~~~~aIAkelGydVIELNASDdR~r-----n~~v~gsl---~~~kkkLILIDEVD~Lfee--------DrGf~~AL~~Li 70 (712)
..+.++|++++..++++.+++-... .......+ ....+.+|+|||+|.++.. |...+..+.+++
T Consensus 171 ~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll 250 (364)
T TIGR01242 171 LLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLL 250 (364)
T ss_pred HHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHH
Confidence 3567889999999999987763211 00000000 1124579999999998532 333445566655
Q ss_pred Hh-------cCCcEEEEecCCCCCCccccc--c--eeeEEcCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHH-cCC
Q 005137 71 EK-------AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVE--LQQHLLVQLIES-CRA 136 (712)
Q Consensus 71 ek-------TKrPIILTCND~n~~Lpklls--r--l~IrFkrPs~~eI~srL~~Ic~~EGik--Id~~~L~~LI~~-S~G 136 (712)
.. .++.||+|+|.....-+.++. + ..|.|..|+..+-...++..+..-++. ++...+..+..+ +++
T Consensus 251 ~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~ 330 (364)
T TIGR01242 251 AELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGA 330 (364)
T ss_pred HHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHH
Confidence 32 355688899986532222332 2 568999999888888777655443332 344455555443 345
Q ss_pred cHHHHHHHHHHHhhc
Q 005137 137 DIRKTIMHLQFWCQN 151 (712)
Q Consensus 137 DIRqaLN~LQf~s~s 151 (712)
||+..+....+.+..
T Consensus 331 dl~~l~~~A~~~a~~ 345 (364)
T TIGR01242 331 DLKAICTEAGMFAIR 345 (364)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988877665543
No 116
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=96.15 E-value=0.0086 Score=61.40 Aligned_cols=95 Identities=18% Similarity=0.164 Sum_probs=78.2
Q ss_pred EEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCCCCCcccccce--------------eeEEcCCCHHHHHHH
Q 005137 47 ILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLPDSLDRL--------------EVSFTMPMPKDLLSH 110 (712)
Q Consensus 47 ILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n~~Lpkllsrl--------------~IrFkrPs~~eI~sr 110 (712)
+|+++||.|+.+ +..||.++++. .+.=|||+|++++..+|..++|. .+.|++.+.+++..+
T Consensus 58 ~iI~~a~~l~~~---A~NaLLK~LEEPp~~~~fiL~t~~~~~llpTI~SRc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~ 134 (206)
T PRK08485 58 IIVIAAPSYGIE---AQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLIIEKRKQKKPVKPLDLDLKKLDLKDIYEF 134 (206)
T ss_pred EEEEchHhhCHH---HHHHHHHHhcCCCCCeEEEEEeCChHhCchHHHhhheeccccccccccccccccCCCCHHHHHHH
Confidence 457899999875 66788888886 23448999999887777778772 377899999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHH
Q 005137 111 LQMICAAEKVELQQHLLVQLIESCRADIRKTIMHL 145 (712)
Q Consensus 111 L~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~L 145 (712)
|.. ..+|++...+++++.|.....|-+|.+|..+
T Consensus 135 L~~-~~ke~~~~~~ea~~lIa~la~~s~r~~l~l~ 168 (206)
T PRK08485 135 LKE-LEKENKLSKEELKELIESLLKECVKYKIPLN 168 (206)
T ss_pred HHH-HHHcccccHHHHHHHHHHHHHHHHHHHcCcc
Confidence 999 7899998889999888888888899986543
No 117
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=95.98 E-value=0.022 Score=60.94 Aligned_cols=92 Identities=15% Similarity=0.181 Sum_probs=66.1
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCcEEEEecCCCCCCcccccc-eeeEEcCCCHHHHHHHHHHHHHHcC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNNITLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEK 119 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrPIILTCND~n~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EG 119 (712)
+.+++|||++|.|+.+ ...||.++++.- +.=+||+|++.+..+|.+++| ..|+|.+ +.+.+. .++..+|
T Consensus 104 ~~kV~II~~ad~m~~~---AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~----~~L~~~g 175 (290)
T PRK07276 104 KQQVFIIKDADKMHVN---AANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLI----QLLEQKG 175 (290)
T ss_pred CcEEEEeehhhhcCHH---HHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHH----HHHHHcC
Confidence 5789999999999875 667888888873 244999999998888989999 7899965 555544 4445778
Q ss_pred CCCCHHHHHHHHHHcCCcHHHHHHHH
Q 005137 120 VELQQHLLVQLIESCRADIRKTIMHL 145 (712)
Q Consensus 120 ikId~~~L~~LI~~S~GDIRqaLN~L 145 (712)
+.-+.. .++....|.+.+++..+
T Consensus 176 ~~~~~a---~~la~~~~s~~~A~~l~ 198 (290)
T PRK07276 176 LLKTQA---ELLAKLAQSTSEAEKLA 198 (290)
T ss_pred CChHHH---HHHHHHCCCHHHHHHHh
Confidence 653332 23333345687777655
No 118
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.97 E-value=0.01 Score=66.98 Aligned_cols=141 Identities=15% Similarity=0.097 Sum_probs=84.4
Q ss_pred ChhhHHHhhCCCcEEEEeCCCcccc---------cccccccCCCCCCcEEEEeCCCCCChh-h-------HHHHHHHHHH
Q 005137 7 VSLCEAAQHADDEVVEVIHIPDDEN---------SHGVMGKSDNHVKPLILIEDVDVFFPE-D-------RGFIAGIQQI 69 (712)
Q Consensus 7 ~~~~aIAkelGydVIELNASDdR~r---------n~~v~gsl~~~kkkLILIDEVD~Lfee-D-------rGf~~AL~~L 69 (712)
..+.++|++.|..++++++++-... ...+... ....+.||+|||+|.++.. + ......+.++
T Consensus 103 ~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a-~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 181 (495)
T TIGR01241 103 LLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQA-KKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQL 181 (495)
T ss_pred HHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHH-HhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHH
Confidence 3567899999999999999873211 0011000 1234689999999999642 1 1112333333
Q ss_pred HHh-------cCCcEEEEecCCCCCCccccc--c--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----c
Q 005137 70 AEK-------AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIES----C 134 (712)
Q Consensus 70 iek-------TKrPIILTCND~n~~Lpklls--r--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~----S 134 (712)
+.. .++-||.++|.+...-+.++. | ..|.|..|+.++-...++..+...++. ++..+..|+.. +
T Consensus 182 L~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~s 260 (495)
T TIGR01241 182 LVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPGFS 260 (495)
T ss_pred HhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCCCC
Confidence 322 234566667776432233332 3 578999999888777777666554443 23345555554 5
Q ss_pred CCcHHHHHHHHHHHh
Q 005137 135 RADIRKTIMHLQFWC 149 (712)
Q Consensus 135 ~GDIRqaLN~LQf~s 149 (712)
++||+..++..-..+
T Consensus 261 gadl~~l~~eA~~~a 275 (495)
T TIGR01241 261 GADLANLLNEAALLA 275 (495)
T ss_pred HHHHHHHHHHHHHHH
Confidence 689999998765443
No 119
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.032 Score=61.42 Aligned_cols=107 Identities=16% Similarity=0.201 Sum_probs=75.5
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhcCCc-----EEEEecCCC---CCCcccccc---eeeEEcCCCHHHHHHHH
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGP-----VILTSNSNN---ITLPDSLDR---LEVSFTMPMPKDLLSHL 111 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekTKrP-----IILTCND~n---~~Lpkllsr---l~IrFkrPs~~eI~srL 111 (712)
+.-+|++||+|.|.+.+. ..|..|.+-...+ ||.+.|+.. ..-++..++ ..|.|++-+.+||...|
T Consensus 123 ~~~IvvLDEid~L~~~~~---~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il 199 (366)
T COG1474 123 KTVIVILDEVDALVDKDG---EVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDIL 199 (366)
T ss_pred CeEEEEEcchhhhccccc---hHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHH
Confidence 456899999999988765 6677777765555 888888864 122333333 56999999999999998
Q ss_pred HHHHHH--cCCCCCHHHHHHH---HHHcCCcHHHHHHHHHHHhhcC
Q 005137 112 QMICAA--EKVELQQHLLVQL---IESCRADIRKTIMHLQFWCQNK 152 (712)
Q Consensus 112 ~~Ic~~--EGikId~~~L~~L---I~~S~GDIRqaLN~LQf~s~s~ 152 (712)
..=+.. ..-.+++++++.+ +....||.|++|-.|.......
T Consensus 200 ~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiA 245 (366)
T COG1474 200 RERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIA 245 (366)
T ss_pred HHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence 864431 1234666666554 4556789999999998766543
No 120
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.69 E-value=0.078 Score=59.44 Aligned_cols=108 Identities=19% Similarity=0.247 Sum_probs=88.1
Q ss_pred CcEEEEeCCCCCChh---hHHHHHHHHHHHHhcCCcEEEEecCCCC----CCcccccc----eeeEEcCCCHHHHHHHHH
Q 005137 44 KPLILIEDVDVFFPE---DRGFIAGIQQIAEKAKGPVILTSNSNNI----TLPDSLDR----LEVSFTMPMPKDLLSHLQ 112 (712)
Q Consensus 44 kkLILIDEVD~Lfee---DrGf~~AL~~LiekTKrPIILTCND~n~----~Lpkllsr----l~IrFkrPs~~eI~srL~ 112 (712)
-.+++|||++.+... +..|...+..+....| -||+||..... ..+++.+| +.+...+|+.+.....|+
T Consensus 176 ~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~k-qIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 176 LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGK-QIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCC-EEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 469999999999765 6778888888888887 48888866432 23566666 688999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHH---HHHhhcC
Q 005137 113 MICAAEKVELQQHLLVQLIESCRADIRKTIMHL---QFWCQNK 152 (712)
Q Consensus 113 ~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~L---Qf~s~s~ 152 (712)
.-+...|+.++++++.-|+.....|+|.....| -+++...
T Consensus 255 kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~ 297 (408)
T COG0593 255 KKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFT 297 (408)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999876655 4444433
No 121
>PRK07914 hypothetical protein; Reviewed
Probab=95.66 E-value=0.09 Score=56.05 Aligned_cols=129 Identities=9% Similarity=0.013 Sum_probs=90.3
Q ss_pred CCcEEEEeCCCcccc--cccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhc---CCcEEEEecCCCC--CCc
Q 005137 17 DDEVVEVIHIPDDEN--SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA---KGPVILTSNSNNI--TLP 89 (712)
Q Consensus 17 GydVIELNASDdR~r--n~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekT---KrPIILTCND~n~--~Lp 89 (712)
.++++.+.+.+.... ......++++ .+++|+++++..+.+ ....+|..+++.. .+ +||+++.... .+-
T Consensus 37 ~~n~~~~d~~~~~~~~i~~~~t~plF~-~rRlV~v~~~~~~~~---~~~~~l~~~l~~~~~~t~-lil~~~~~~~~kk~~ 111 (320)
T PRK07914 37 DVPVSRMRAGDVSTYELAELLSPSLFA-EERVVVLEAAAEAGK---DAAALILSAAADLPPGTV-LVVVHSGGGRAKALA 111 (320)
T ss_pred CCceEEeccccCCHHHHHHhcCCCCCC-CceEEEEeChHhccH---HHHHHHHHHHhCCCCCeE-EEEEecCCcchhHHH
Confidence 567888888764311 1112335555 578999999755542 2456777777752 22 4555433211 111
Q ss_pred cccc-c--eeeEEcCC-CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 005137 90 DSLD-R--LEVSFTMP-MPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (712)
Q Consensus 90 klls-r--l~IrFkrP-s~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~ 150 (712)
+.+. . ..+.|.+| ...++..+++..+.+.|+.|++++++.|+...++|++.+-+.|+-.+.
T Consensus 112 K~L~k~g~~~v~~~~~~~~~~l~~wi~~~a~~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~ 176 (320)
T PRK07914 112 NQLRKLGAEVHPCARITKAAERADFVRKEFRSLRVKVDDDTVTALLDAVGSDLRELASACSQLVA 176 (320)
T ss_pred HHHHHCCCEEEecCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHCccHHHHHHHHHHHhc
Confidence 1222 2 37799988 999999999999999999999999999999999999999999997654
No 122
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.65 E-value=0.035 Score=59.59 Aligned_cols=80 Identities=21% Similarity=0.279 Sum_probs=64.5
Q ss_pred CCCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCcEEEEecCCCCCCcccccc-eeeEEcCCCHHHHHHHHHHHHHHc
Q 005137 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNNITLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAE 118 (712)
Q Consensus 42 ~kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrPIILTCND~n~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~E 118 (712)
.+.+++|||++|.|+.+ ++.||.++++.- +.-+||+|+..+..+|.+++| ..++|.++ +
T Consensus 94 ~~~kv~ii~~ad~mt~~---AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~---------------~ 155 (290)
T PRK05917 94 SPYKIYIIHEADRMTLD---AISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME---------------E 155 (290)
T ss_pred CCceEEEEechhhcCHH---HHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccch---------------h
Confidence 36799999999999886 668999999873 455999999988878888999 78899875 3
Q ss_pred CCCCCHHHHHHHHHHcCCcHH
Q 005137 119 KVELQQHLLVQLIESCRADIR 139 (712)
Q Consensus 119 GikId~~~L~~LI~~S~GDIR 139 (712)
...++++.+..++..++|+++
T Consensus 156 ~~~i~~~~~~~l~~~~~g~~~ 176 (290)
T PRK05917 156 KTLVSKEDIAYLIGYAQGKES 176 (290)
T ss_pred ccCCCHHHHHHHHHHhCCChh
Confidence 335778888888888888774
No 123
>PRK05629 hypothetical protein; Validated
Probab=95.60 E-value=0.092 Score=55.85 Aligned_cols=128 Identities=9% Similarity=0.051 Sum_probs=90.3
Q ss_pred CCcEEEEeCCCccc-c--cccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhc---CCcEEEEecCCCCC--C
Q 005137 17 DDEVVEVIHIPDDE-N--SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA---KGPVILTSNSNNIT--L 88 (712)
Q Consensus 17 GydVIELNASDdR~-r--n~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekT---KrPIILTCND~n~~--L 88 (712)
.++++++++.+..- . .. ...++++ .+++|+++..+.... . ...++.+++... .+ +||++.....- +
T Consensus 37 ~~n~~~~d~~e~~~~~l~~~-~t~slF~-~~rlV~v~~~~~~~~--~-~~~~l~~~l~~~~~~~~-Lil~~~~~~~~kk~ 110 (318)
T PRK05629 37 SLQVTTLKASEVSQGELLDA-LSPSLFG-EDRVIVLTNMEQAGK--E-PTDLALSAAVDPSPGIY-LIIMHSGGGRTKSM 110 (318)
T ss_pred CCceEEeecccCCHHHHHHh-hCcCccC-CceEEEEeChHhcCh--h-HHHHHHHHHhCCCCCeE-EEEEcCCcchhhHH
Confidence 47899999886431 1 22 2345565 568999999876322 1 234555555532 22 56666542211 1
Q ss_pred cccccc--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 005137 89 PDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (712)
Q Consensus 89 pkllsr--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~ 150 (712)
-+.+.. ..+.|.+|...++..++...+.++|++|++++++.|+..+++|++.+-+.|+-.+.
T Consensus 111 ~K~l~k~~~~ve~~~~~~~~l~~wi~~~~~~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~ 174 (318)
T PRK05629 111 VPKLEKIAVVHEAAKLKPRERPGWVTQEFKNHGVRPTPDVVHALLEGVGSDLRELASAISQLVE 174 (318)
T ss_pred HHHHHhcceEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHCccHHHHHHHHHHHHh
Confidence 112332 67899999999999999999999999999999999999999999999999997664
No 124
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.42 E-value=0.086 Score=58.59 Aligned_cols=100 Identities=20% Similarity=0.329 Sum_probs=81.1
Q ss_pred CcEEEEeCCCCCChhhHHHHHHHHHHHHhcCCcEEEEecCC-----------CC-CCc-ccccc-eeeEEcCCCHHHHHH
Q 005137 44 KPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSN-----------NI-TLP-DSLDR-LEVSFTMPMPKDLLS 109 (712)
Q Consensus 44 kkLILIDEVD~LfeeDrGf~~AL~~LiekTKrPIILTCND~-----------n~-~Lp-kllsr-l~IrFkrPs~~eI~s 109 (712)
+.+++||||+-| |--..+-|.+-++.-=.|||+.+.++ .+ .+| .+++| +.|+-++-+.++++.
T Consensus 292 pGVLFIDEvHmL---DIE~FsFlnrAlEse~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~Eire 368 (450)
T COG1224 292 PGVLFIDEVHML---DIECFSFLNRALESELAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIRE 368 (450)
T ss_pred cceEEEechhhh---hHHHHHHHHHHhhcccCcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHH
Confidence 689999999988 44455666777777778998887654 12 234 36688 788888889999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-cCCcHHHHHHHHH
Q 005137 110 HLQMICAAEKVELQQHLLVQLIES-CRADIRKTIMHLQ 146 (712)
Q Consensus 110 rL~~Ic~~EGikId~~~L~~LI~~-S~GDIRqaLN~LQ 146 (712)
.|+-=|..|++.+++++++.|... ...-+|.+++.|.
T Consensus 369 Ii~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~ 406 (450)
T COG1224 369 IIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLT 406 (450)
T ss_pred HHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhcc
Confidence 999999999999999999999886 4677999999886
No 125
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=95.23 E-value=0.025 Score=63.68 Aligned_cols=145 Identities=13% Similarity=0.165 Sum_probs=88.7
Q ss_pred ChhhHHHhhCCCcEEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCChh--------hHHHHHHHHHHH
Q 005137 7 VSLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFPE--------DRGFIAGIQQIA 70 (712)
Q Consensus 7 ~~~~aIAkelGydVIELNASDdR~r-----n~~v~gsl---~~~kkkLILIDEVD~Lfee--------DrGf~~AL~~Li 70 (712)
+.+.++|++++..++++++++-..+ ...+...+ ....+.+|+|||+|.++.. ++.....+..++
T Consensus 232 ~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL 311 (438)
T PTZ00361 232 LLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELL 311 (438)
T ss_pred HHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHH
Confidence 4567899999999999998873211 00011000 1134679999999988532 233344455554
Q ss_pred H-------hcCCcEEEEecCCCCCCccccc--c--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH----HHcC
Q 005137 71 E-------KAKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLI----ESCR 135 (712)
Q Consensus 71 e-------kTKrPIILTCND~n~~Lpklls--r--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI----~~S~ 135 (712)
. ...+.||+++|.+...-+.++. + ..|.|..|+..+....++....+..+.- +-.++.++ ..++
T Consensus 312 ~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~-dvdl~~la~~t~g~sg 390 (438)
T PTZ00361 312 NQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAE-DVDLEEFIMAKDELSG 390 (438)
T ss_pred HHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCc-CcCHHHHHHhcCCCCH
Confidence 3 2356688888886532222332 3 5799999999888888876655544421 11234444 4578
Q ss_pred CcHHHHHHHHHHHhhcC
Q 005137 136 ADIRKTIMHLQFWCQNK 152 (712)
Q Consensus 136 GDIRqaLN~LQf~s~s~ 152 (712)
.||+.++...-..+...
T Consensus 391 AdI~~i~~eA~~~Alr~ 407 (438)
T PTZ00361 391 ADIKAICTEAGLLALRE 407 (438)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 89999887766555443
No 126
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=95.08 E-value=0.064 Score=56.91 Aligned_cols=95 Identities=14% Similarity=0.098 Sum_probs=70.9
Q ss_pred CCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCCCCCcccccc-eeeEEcCC----------CHHHHH
Q 005137 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLPDSLDR-LEVSFTMP----------MPKDLL 108 (712)
Q Consensus 42 ~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n~~Lpkllsr-l~IrFkrP----------s~~eI~ 108 (712)
.+.+++||+++|.|..+ +..||.++++. .+.=+||++++.+..++-.++| ..+.|.++ ...++.
T Consensus 87 ~~~KV~II~~ae~m~~~---AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~~~~~~~i~ 163 (261)
T PRK05818 87 NGKKIYIIYGIEKLNKQ---SANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSKEKKVPFKVESNDRYFQ 163 (261)
T ss_pred CCCEEEEeccHhhhCHH---HHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCChhhhcccccccChHHHH
Confidence 35799999999999876 66788888886 3445999999998888889999 67888777 333333
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHH
Q 005137 109 SHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFW 148 (712)
Q Consensus 109 srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~ 148 (712)
..|. +...+++ ++...++|++.+++..++.+
T Consensus 164 ~~L~-----~~~~~d~----~i~~~a~g~~~~a~~l~~~l 194 (261)
T PRK05818 164 YILL-----SFYSVDE----QLQAYNNGSFSKLKNIIETL 194 (261)
T ss_pred HHHH-----HccCccH----HHHHHcCCCHHHHHHHHHHH
Confidence 3322 1222444 67778899999999999965
No 127
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.93 E-value=0.15 Score=55.76 Aligned_cols=106 Identities=21% Similarity=0.283 Sum_probs=82.4
Q ss_pred CcEEEEeCCCCCChhhHHHHHHHHHHHHhcCCcEEEEecCC-----------CC-CCcc-cccc-eeeEEcCCCHHHHHH
Q 005137 44 KPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSN-----------NI-TLPD-SLDR-LEVSFTMPMPKDLLS 109 (712)
Q Consensus 44 kkLILIDEVD~LfeeDrGf~~AL~~LiekTKrPIILTCND~-----------n~-~Lpk-llsr-l~IrFkrPs~~eI~s 109 (712)
+.++++|||.-| |--..+-|.+-++.--.|||+.+.++ ++ .+|. +++| +.|.-.+-+.+++..
T Consensus 289 pGVLFIDEvHML---DIEcFsFlNrAlE~d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~~d~~~ 365 (454)
T KOG2680|consen 289 PGVLFIDEVHML---DIECFSFLNRALENDMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTEEDIKK 365 (454)
T ss_pred cceEEEeeehhh---hhHHHHHHHHHhhhccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcHHHHHH
Confidence 689999999988 33345556666677778999887553 22 2443 5577 788888889999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-cCCcHHHHHHHHHHHhhcC
Q 005137 110 HLQMICAAEKVELQQHLLVQLIES-CRADIRKTIMHLQFWCQNK 152 (712)
Q Consensus 110 rL~~Ic~~EGikId~~~L~~LI~~-S~GDIRqaLN~LQf~s~s~ 152 (712)
.|.-=|..|++.+++++++.|... ..--+|.+|+.+-...+..
T Consensus 366 IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~ 409 (454)
T KOG2680|consen 366 ILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVC 409 (454)
T ss_pred HHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999775 3567999999887655443
No 128
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.68 E-value=0.047 Score=59.10 Aligned_cols=69 Identities=17% Similarity=0.220 Sum_probs=55.8
Q ss_pred CCCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCcEEEEecCCCCCCcccccc-eeeEEcCCCHHHHHHHHHH
Q 005137 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNNITLPDSLDR-LEVSFTMPMPKDLLSHLQM 113 (712)
Q Consensus 42 ~kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrPIILTCND~n~~Lpkllsr-l~IrFkrPs~~eI~srL~~ 113 (712)
.+.+|+|+|++|+|.. .+..++.++++.- .+.+|+++++....++.+.+| ..++|.+|+.+++..+|..
T Consensus 112 ~~~kV~iiEp~~~Ld~---~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 112 GGLRVILIHPAESMNL---QAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred CCceEEEEechhhCCH---HHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHh
Confidence 3578999999999955 4667888888764 466999999987656666777 7899999999999999863
No 129
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.37 E-value=0.087 Score=62.39 Aligned_cols=141 Identities=16% Similarity=0.155 Sum_probs=82.5
Q ss_pred ChhhHHHhhCCCcEEEEeCCCcccc----c-ccccccC---CCCCCcEEEEeCCCCCChh-----hHHHH-HHHHHHHHh
Q 005137 7 VSLCEAAQHADDEVVEVIHIPDDEN----S-HGVMGKS---DNHVKPLILIEDVDVFFPE-----DRGFI-AGIQQIAEK 72 (712)
Q Consensus 7 ~~~~aIAkelGydVIELNASDdR~r----n-~~v~gsl---~~~kkkLILIDEVD~Lfee-----DrGf~-~AL~~Liek 72 (712)
+.+.++|+++|.+++.+++++-..+ + ..+...+ ....+.+|+|||+|.++.. +.+.. +.+.+++..
T Consensus 502 ~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ 581 (733)
T TIGR01243 502 LLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTE 581 (733)
T ss_pred HHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHH
Confidence 4577899999999999999873221 0 0000000 1235689999999999642 11111 223333332
Q ss_pred -------cCCcEEEEecCCCCCCccccc--c--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH----cCC
Q 005137 73 -------AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQH-LLVQLIES----CRA 136 (712)
Q Consensus 73 -------TKrPIILTCND~n~~Lpklls--r--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~-~L~~LI~~----S~G 136 (712)
.++-||.++|.+...-+.++. | ..|.|..|+.++-...++... .++.++++ .++.|+.. ++.
T Consensus 582 ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~--~~~~~~~~~~l~~la~~t~g~sga 659 (733)
T TIGR01243 582 MDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHT--RSMPLAEDVDLEELAEMTEGYTGA 659 (733)
T ss_pred hhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHh--cCCCCCccCCHHHHHHHcCCCCHH
Confidence 234477777876543333332 4 578899999877776665433 34544332 35555553 578
Q ss_pred cHHHHHHHHHHHh
Q 005137 137 DIRKTIMHLQFWC 149 (712)
Q Consensus 137 DIRqaLN~LQf~s 149 (712)
||..+++.-...+
T Consensus 660 di~~~~~~A~~~a 672 (733)
T TIGR01243 660 DIEAVCREAAMAA 672 (733)
T ss_pred HHHHHHHHHHHHH
Confidence 9988776555443
No 130
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.09 E-value=0.17 Score=59.52 Aligned_cols=143 Identities=12% Similarity=0.054 Sum_probs=87.0
Q ss_pred hhhHHHhhCCCcEEEEeCCCcccc----c-----ccccccCCCCCCcEEEEeCCCCCChh--------hHHHHHHHHHHH
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDEN----S-----HGVMGKSDNHVKPLILIEDVDVFFPE--------DRGFIAGIQQIA 70 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~r----n-----~~v~gsl~~~kkkLILIDEVD~Lfee--------DrGf~~AL~~Li 70 (712)
.+.++|+++|..++.+++++-... . ..+.. .....+.+|+|||+|.+... +......+.+++
T Consensus 201 ~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~-a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL 279 (644)
T PRK10733 201 LAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQ-AKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQML 279 (644)
T ss_pred HHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHH-HHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHH
Confidence 456789999999999999873321 0 00000 01234679999999999542 111122344443
Q ss_pred H-------hcCCcEEEEecCCCCCCccccc--c--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC---
Q 005137 71 E-------KAKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRA--- 136 (712)
Q Consensus 71 e-------kTKrPIILTCND~n~~Lpklls--r--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~G--- 136 (712)
. ...+-+|.+||.+...-+.++. | ..|.|..|+.++-...|.....+..+.- +-.+..|+..+.|
T Consensus 280 ~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~-~~d~~~la~~t~G~sg 358 (644)
T PRK10733 280 VEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAP-DIDAAIIARGTPGFSG 358 (644)
T ss_pred HhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCC-cCCHHHHHhhCCCCCH
Confidence 2 1223455577776532233332 3 5688999998877777776655433321 2235667777777
Q ss_pred -cHHHHHHHHHHHhhcC
Q 005137 137 -DIRKTIMHLQFWCQNK 152 (712)
Q Consensus 137 -DIRqaLN~LQf~s~s~ 152 (712)
||+..+|.....+...
T Consensus 359 adl~~l~~eAa~~a~r~ 375 (644)
T PRK10733 359 ADLANLVNEAALFAARG 375 (644)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 9999999988776543
No 131
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=94.04 E-value=0.71 Score=49.58 Aligned_cols=114 Identities=15% Similarity=0.107 Sum_probs=80.9
Q ss_pred ccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhc-CCcEEEEe-cCCCC--CCcccccc----eeeEEcCCCHHHHH
Q 005137 37 GKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-KGPVILTS-NSNNI--TLPDSLDR----LEVSFTMPMPKDLL 108 (712)
Q Consensus 37 gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekT-KrPIILTC-ND~n~--~Lpkllsr----l~IrFkrPs~~eI~ 108 (712)
.++++ .+++|++.+.....+ .-+.+|..+++.. ...+|+.+ ++... .+.+.+.. ..+.|.+|+..++.
T Consensus 66 ~plF~-~~rlViv~~~~~~~~---~~~~~L~~~l~~~~~~~~lv~~~~~~~k~kkl~k~~~~~k~~~~v~~~~~~~~~l~ 141 (328)
T PRK08487 66 SSLFG-GKNLLIIKLDKKIPK---KELKLLIELCEKNSDNYFIIELYGADSKTKDIEKLFQKKDEAVFVRFFKPNAREAL 141 (328)
T ss_pred ccccC-CceEEEEecccccCH---HHHHHHHHHHhcCCCCEEEEEecCCcchhHHHHHHhccCCCceEEEeeCCCHHHHH
Confidence 34555 467888887654432 2346677766542 22255553 33221 11123322 46899999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCC
Q 005137 109 SHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNKGY 154 (712)
Q Consensus 109 srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~s~~~ 154 (712)
.++...+.++|+.|++++++.|+...++|++.+-|.|+-.+.-.+.
T Consensus 142 ~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~ELeKL~ly~~~ 187 (328)
T PRK08487 142 ELLQERAKELGLDIDQNALNHLYFIHNEDLALAANELEKLAILNEP 187 (328)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999987775543
No 132
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=93.56 E-value=0.28 Score=58.33 Aligned_cols=133 Identities=17% Similarity=0.144 Sum_probs=87.7
Q ss_pred hhhHHHhhCCCcEEEEeCCCcccc---c---cccccc------------CCCCCCcEEEEeCCCCCChhhHHHHHHHHHH
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDEN---S---HGVMGK------------SDNHVKPLILIEDVDVFFPEDRGFIAGIQQI 69 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~r---n---~~v~gs------------l~~~kkkLILIDEVD~LfeeDrGf~~AL~~L 69 (712)
.+.++|+.++..++-++.|+..+. . ....|. +.....++|||||||.+.. ..+..|.++
T Consensus 500 lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~---~~~~~Ll~~ 576 (731)
T TIGR02639 500 LAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHP---DIYNILLQV 576 (731)
T ss_pred HHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCH---HHHHHHHHh
Confidence 567899999999999999884321 0 000111 1123568999999998854 477788888
Q ss_pred HHhc-------------CCcEEEEecCCCC-------------------------CCcccccc--eeeEEcCCCHHHHHH
Q 005137 70 AEKA-------------KGPVILTSNSNNI-------------------------TLPDSLDR--LEVSFTMPMPKDLLS 109 (712)
Q Consensus 70 iekT-------------KrPIILTCND~n~-------------------------~Lpkllsr--l~IrFkrPs~~eI~s 109 (712)
+... ++=||+|+|--.. ..|..+.| .+|.|++.+.+++..
T Consensus 577 ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~ 656 (731)
T TIGR02639 577 MDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEK 656 (731)
T ss_pred hccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHH
Confidence 8753 2237777776321 12334455 578999999988877
Q ss_pred HHHHHHH-------HcC--CCCCHHHHHHHHHHc------CCcHHHHHH
Q 005137 110 HLQMICA-------AEK--VELQQHLLVQLIESC------RADIRKTIM 143 (712)
Q Consensus 110 rL~~Ic~-------~EG--ikId~~~L~~LI~~S------~GDIRqaLN 143 (712)
.+..... ..| +.+++++++.|+... ...||++|.
T Consensus 657 Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~ 705 (731)
T TIGR02639 657 IVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQ 705 (731)
T ss_pred HHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHH
Confidence 7776543 223 578999999999863 345666654
No 133
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.31 E-value=0.22 Score=59.07 Aligned_cols=127 Identities=15% Similarity=0.184 Sum_probs=76.7
Q ss_pred ChhhHHHhhCCCcEEEEeCCCcccc---------cccccccCCCCCCcEEEEeCCCCCChh--------hHHHHHHHHHH
Q 005137 7 VSLCEAAQHADDEVVEVIHIPDDEN---------SHGVMGKSDNHVKPLILIEDVDVFFPE--------DRGFIAGIQQI 69 (712)
Q Consensus 7 ~~~~aIAkelGydVIELNASDdR~r---------n~~v~gsl~~~kkkLILIDEVD~Lfee--------DrGf~~AL~~L 69 (712)
..+.++|++++..++++|+++-..+ ...+.. .....+.+|+|||+|.++.. ++..+..|..+
T Consensus 227 ~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~-a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ 305 (733)
T TIGR01243 227 LLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKE-AEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTL 305 (733)
T ss_pred HHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHH-HHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHH
Confidence 3567899999999999998762211 000100 01234679999999998642 34456666666
Q ss_pred HHh----cCCcEEEEecCCCCCCccccc--c--eeeEEcCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCC
Q 005137 70 AEK----AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQ-QHLLVQLIESCRA 136 (712)
Q Consensus 70 iek----TKrPIILTCND~n~~Lpklls--r--l~IrFkrPs~~eI~srL~~Ic~~EGikId-~~~L~~LI~~S~G 136 (712)
+.. .++-||.++|.+...-+.++. | ..|.|..|+..+-...|+.. ..++.+. +..++.|+..+.|
T Consensus 306 ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~--~~~~~l~~d~~l~~la~~t~G 379 (733)
T TIGR01243 306 MDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVH--TRNMPLAEDVDLDKLAEVTHG 379 (733)
T ss_pred hhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHH--hcCCCCccccCHHHHHHhCCC
Confidence 653 233344466765432222222 3 57889999988877777733 3455553 3457777777655
No 134
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=93.06 E-value=0.47 Score=56.62 Aligned_cols=126 Identities=15% Similarity=0.131 Sum_probs=85.7
Q ss_pred hhhHHHhhCCCcEEEEeCCCccc-------ccccccccC----------CCCCCcEEEEeCCCCCChhhHHH-HHHHHHH
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDE-------NSHGVMGKS----------DNHVKPLILIEDVDVFFPEDRGF-IAGIQQI 69 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~-------rn~~v~gsl----------~~~kkkLILIDEVD~LfeeDrGf-~~AL~~L 69 (712)
..--||+.+|-.++-+.-+--|. |.+++ |++ .+.++.|+|+||||-|...-||= .+||.+.
T Consensus 366 LgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYI-GamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEV 444 (782)
T COG0466 366 LGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYI-GAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEV 444 (782)
T ss_pred HHHHHHHHhCCCEEEEecCccccHHHhcccccccc-ccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhh
Confidence 44568999999999998876442 12332 222 13468899999999996653442 3677776
Q ss_pred HH-----------------hcCCcEEEEecCCCCCCcccccc-eeeEEcCCCHHHH----HHHHH-HHHHHcC-----CC
Q 005137 70 AE-----------------KAKGPVILTSNSNNITLPDSLDR-LEVSFTMPMPKDL----LSHLQ-MICAAEK-----VE 121 (712)
Q Consensus 70 ie-----------------kTKrPIILTCND~n~~Lpkllsr-l~IrFkrPs~~eI----~srL~-~Ic~~EG-----ik 121 (712)
+. -+++=||+|+|..+..-.++++| .+|++.--+..+= +.||- .+.+..| +.
T Consensus 445 LDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~ 524 (782)
T COG0466 445 LDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELT 524 (782)
T ss_pred cCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCcccee
Confidence 54 16777999999988533456799 7899988776542 23332 3344445 46
Q ss_pred CCHHHHHHHHHHc
Q 005137 122 LQQHLLVQLIESC 134 (712)
Q Consensus 122 Id~~~L~~LI~~S 134 (712)
+++++|..||++.
T Consensus 525 i~d~ai~~iI~~Y 537 (782)
T COG0466 525 ITDEAIKDIIRYY 537 (782)
T ss_pred ecHHHHHHHHHHH
Confidence 8999999999874
No 135
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.02 E-value=0.48 Score=53.90 Aligned_cols=140 Identities=14% Similarity=0.172 Sum_probs=85.4
Q ss_pred hhhHHHhhCCCcEEEEeCCCcccc---cccccccCCCCCCcEEEEeCCCCCChh----------hHH--H---HHHHHHH
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDEN---SHGVMGKSDNHVKPLILIEDVDVFFPE----------DRG--F---IAGIQQI 69 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~r---n~~v~gsl~~~kkkLILIDEVD~Lfee----------DrG--f---~~AL~~L 69 (712)
...|+|++++|+|.-|+-+..... ++.... ...++||||||||--++- +.| . .+.|..+
T Consensus 251 ~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~---t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNf 327 (457)
T KOG0743|consen 251 FIAAMANYLNYDIYDLELTEVKLDSDLRHLLLA---TPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNF 327 (457)
T ss_pred HHHHHHhhcCCceEEeeeccccCcHHHHHHHHh---CCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhh
Confidence 356899999999998888764432 233322 234789999999988541 221 0 1223222
Q ss_pred HH----hc--CCcEEEEecCCCCCCccccc--c--eeeEEcCCCHHHHHHHHHHHH--------------HHcCCCCCHH
Q 005137 70 AE----KA--KGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMIC--------------AAEKVELQQH 125 (712)
Q Consensus 70 ie----kT--KrPIILTCND~n~~Lpklls--r--l~IrFkrPs~~eI~srL~~Ic--------------~~EGikId~~ 125 (712)
+. .. -|-||||+|-..+.=|.++. | ..|.+...+...++.-..+.. ..++..++|.
T Consensus 328 iDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~~tPA 407 (457)
T KOG0743|consen 328 LDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEETEVTPA 407 (457)
T ss_pred hccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcCccCHH
Confidence 22 22 46799999998754455554 2 667777777655544433332 3456788887
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHhh
Q 005137 126 LLVQLIESCRADIRKTIMHLQFWCQ 150 (712)
Q Consensus 126 ~L~~LI~~S~GDIRqaLN~LQf~s~ 150 (712)
.+....-..+.|.-.+|..|=-...
T Consensus 408 ~V~e~lm~~~~dad~~lk~Lv~~l~ 432 (457)
T KOG0743|consen 408 QVAEELMKNKNDADVALKGLVEALE 432 (457)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHH
Confidence 7766555555477777766643333
No 136
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=92.94 E-value=0.56 Score=51.41 Aligned_cols=101 Identities=18% Similarity=0.313 Sum_probs=79.7
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhcCCcEEEEecCC------------CC-CC-cccccc-eeeEEcCCCHHHH
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSN------------NI-TL-PDSLDR-LEVSFTMPMPKDL 107 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekTKrPIILTCND~------------n~-~L-pkllsr-l~IrFkrPs~~eI 107 (712)
-+.+++||||.-+ |--...-|.+.++..--|||+-+.++ .+ .+ +.+++| ..|+-.+-+.+++
T Consensus 296 vPGVLFIDEVhML---DiEcFTyL~kalES~iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~ 372 (456)
T KOG1942|consen 296 VPGVLFIDEVHML---DIECFTYLHKALESPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEI 372 (456)
T ss_pred cCcceEeeehhhh---hhHHHHHHHHHhcCCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCCHHHH
Confidence 4689999999988 55566677788888777876655432 11 12 346788 6788888889999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH-cCCcHHHHHHHHH
Q 005137 108 LSHLQMICAAEKVELQQHLLVQLIES-CRADIRKTIMHLQ 146 (712)
Q Consensus 108 ~srL~~Ic~~EGikId~~~L~~LI~~-S~GDIRqaLN~LQ 146 (712)
+..+..=+..||+.++++.++.|.+. +..-+|.++..|-
T Consensus 373 r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~ 412 (456)
T KOG1942|consen 373 RQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLT 412 (456)
T ss_pred HHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcC
Confidence 99999999999999999999999884 5778999997775
No 137
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=92.87 E-value=0.17 Score=60.27 Aligned_cols=143 Identities=21% Similarity=0.218 Sum_probs=90.5
Q ss_pred hhhHHHhhCCCcEEEEeCCCc-----c-c-cccccc---ccC------CCCCCcEEEEeCCCCCChhhHHH-HHHHHHHH
Q 005137 8 SLCEAAQHADDEVVEVIHIPD-----D-E-NSHGVM---GKS------DNHVKPLILIEDVDVFFPEDRGF-IAGIQQIA 70 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDd-----R-~-rn~~v~---gsl------~~~kkkLILIDEVD~LfeeDrGf-~~AL~~Li 70 (712)
-+..||+.+|-.++.+.-.-- + + |.+++. |.+ .+.-+.||||||||.+..+-+|= .+||.+++
T Consensus 454 I~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElL 533 (906)
T KOG2004|consen 454 IAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELL 533 (906)
T ss_pred HHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhc
Confidence 356789999998888876541 1 1 122321 111 12347899999999997653332 46888876
Q ss_pred H-----------------hcCCcEEEEecCCCCCCcccccc-eeeEEcCCCHHHHH----HHHH-HHHH-----HcCCCC
Q 005137 71 E-----------------KAKGPVILTSNSNNITLPDSLDR-LEVSFTMPMPKDLL----SHLQ-MICA-----AEKVEL 122 (712)
Q Consensus 71 e-----------------kTKrPIILTCND~n~~Lpkllsr-l~IrFkrPs~~eI~----srL~-~Ic~-----~EGikI 122 (712)
. -+|+=||||+|....+-+++++| ..|...--..++=. .||. ..+. -|.++|
T Consensus 534 DPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~i 613 (906)
T KOG2004|consen 534 DPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKI 613 (906)
T ss_pred ChhhccchhhhccccccchhheEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCc
Confidence 4 26777999999998755667899 77888665554422 2222 2223 445689
Q ss_pred CHHHHHHHHHHc--CCcHHHHHHHHHHHhh
Q 005137 123 QQHLLVQLIESC--RADIRKTIMHLQFWCQ 150 (712)
Q Consensus 123 d~~~L~~LI~~S--~GDIRqaLN~LQf~s~ 150 (712)
+++++..||+.. ..-+|..=-++..++.
T Consensus 614 s~~al~~lI~~YcrEaGVRnLqk~iekI~R 643 (906)
T KOG2004|consen 614 SDDALLALIERYCREAGVRNLQKQIEKICR 643 (906)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999998864 2335555555554443
No 138
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.76 E-value=0.32 Score=52.25 Aligned_cols=115 Identities=17% Similarity=0.254 Sum_probs=78.7
Q ss_pred ChhhHHHhhCCCcEEEEeCCCcccc-----ccccccc--C-CCCCCcEEEEeCCCCC----Ch----hhHHHHHHHHHHH
Q 005137 7 VSLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGK--S-DNHVKPLILIEDVDVF----FP----EDRGFIAGIQQIA 70 (712)
Q Consensus 7 ~~~~aIAkelGydVIELNASDdR~r-----n~~v~gs--l-~~~kkkLILIDEVD~L----fe----eDrGf~~AL~~Li 70 (712)
...-++|++-...+|.++.|.---+ -..+..- + ....+.+|+|||||.+ |+ .||.-.+-|.+++
T Consensus 204 ml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ell 283 (408)
T KOG0727|consen 204 MLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELL 283 (408)
T ss_pred HHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHH
Confidence 3566889999999999999872210 0000000 0 1135789999999998 32 3777778888888
Q ss_pred Hh-------cCCcEEEEecCCCCCCccccc--c--eeeEEcCCCHHHHHHHHHHHHHHcCCC
Q 005137 71 EK-------AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVE 121 (712)
Q Consensus 71 ek-------TKrPIILTCND~n~~Lpklls--r--l~IrFkrPs~~eI~srL~~Ic~~EGik 121 (712)
.+ +++-+|+.+|.-...=|.++. | ..|.|.-|+..+=+-...+|+.+.++.
T Consensus 284 nqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls 345 (408)
T KOG0727|consen 284 NQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLS 345 (408)
T ss_pred HhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCC
Confidence 75 678899999986543344442 2 568999998888777778888877764
No 139
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=92.75 E-value=0.49 Score=56.96 Aligned_cols=133 Identities=16% Similarity=0.147 Sum_probs=86.3
Q ss_pred hhhHHHhhCCCcEEEEeCCCcccc---c-------ccc----cccC----CCCCCcEEEEeCCCCCChhhHHHHHHHHHH
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDEN---S-------HGV----MGKS----DNHVKPLILIEDVDVFFPEDRGFIAGIQQI 69 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~r---n-------~~v----~gsl----~~~kkkLILIDEVD~LfeeDrGf~~AL~~L 69 (712)
.+.++|+.+|..++.+|.++..+. . .++ .|.+ .....++|+|||+|.+.. ..+..|.++
T Consensus 504 lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~---~v~~~LLq~ 580 (758)
T PRK11034 504 VTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP---DVFNLLLQV 580 (758)
T ss_pred HHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH---HHHHHHHHH
Confidence 456899999999999999884321 0 011 0111 123468999999999954 467788888
Q ss_pred HHhc-------------CCcEEEEecCCC-------------------------CCCcccccc--eeeEEcCCCHHHHHH
Q 005137 70 AEKA-------------KGPVILTSNSNN-------------------------ITLPDSLDR--LEVSFTMPMPKDLLS 109 (712)
Q Consensus 70 iekT-------------KrPIILTCND~n-------------------------~~Lpkllsr--l~IrFkrPs~~eI~s 109 (712)
+... ++-||+|+|.-. ...|..+.| .+|.|++.+.+++..
T Consensus 581 ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~ 660 (758)
T PRK11034 581 MDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQ 660 (758)
T ss_pred HhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHH
Confidence 7742 233888888320 012444466 578999999887766
Q ss_pred HHHHH-------HHHcCC--CCCHHHHHHHHHHc------CCcHHHHHH
Q 005137 110 HLQMI-------CAAEKV--ELQQHLLVQLIESC------RADIRKTIM 143 (712)
Q Consensus 110 rL~~I-------c~~EGi--kId~~~L~~LI~~S------~GDIRqaLN 143 (712)
.+... +...|+ .+++.+++.|++.. ...+|++|.
T Consensus 661 I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~ 709 (758)
T PRK11034 661 VVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQ 709 (758)
T ss_pred HHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHH
Confidence 65533 234455 56899999999753 345666664
No 140
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=92.40 E-value=0.3 Score=47.26 Aligned_cols=97 Identities=12% Similarity=0.246 Sum_probs=62.8
Q ss_pred CcEEEEeCCCCCC---hhhHHHHHHHHHHHHh----cCCcEEEEecCCC------CCCcccccc-eeeEEcCCCHHHHHH
Q 005137 44 KPLILIEDVDVFF---PEDRGFIAGIQQIAEK----AKGPVILTSNSNN------ITLPDSLDR-LEVSFTMPMPKDLLS 109 (712)
Q Consensus 44 kkLILIDEVD~Lf---eeDrGf~~AL~~Liek----TKrPIILTCND~n------~~Lpkllsr-l~IrFkrPs~~eI~s 109 (712)
+-+|||||+|.+. .++.++...+..++.. .+.-+|++..... ....+.+.+ ..+.+++.+.++...
T Consensus 119 ~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~ 198 (234)
T PF01637_consen 119 KVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEARE 198 (234)
T ss_dssp CEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHH
T ss_pred cEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHH
Confidence 4899999999998 4568889999888887 2333454444321 112234455 458999999999999
Q ss_pred HHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHH
Q 005137 110 HLQMICAAEKVEL--QQHLLVQLIESCRADIRKT 141 (712)
Q Consensus 110 rL~~Ic~~EGikI--d~~~L~~LI~~S~GDIRqa 141 (712)
.+......- .++ ++..++.+...++|--+..
T Consensus 199 ~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l 231 (234)
T PF01637_consen 199 FLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYL 231 (234)
T ss_dssp HHHHHHHCC-------HHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHH
Confidence 999877665 655 9999999999999966643
No 141
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.29 E-value=0.65 Score=56.56 Aligned_cols=140 Identities=14% Similarity=0.149 Sum_probs=91.3
Q ss_pred hhhHHHhhC---CCcEEEEeCCCcccc------cccccc------------cCCCCCCcEEEEeCCCCCChhhHHHHHHH
Q 005137 8 SLCEAAQHA---DDEVVEVIHIPDDEN------SHGVMG------------KSDNHVKPLILIEDVDVFFPEDRGFIAGI 66 (712)
Q Consensus 8 ~~~aIAkel---GydVIELNASDdR~r------n~~v~g------------sl~~~kkkLILIDEVD~LfeeDrGf~~AL 66 (712)
.+.++|+.+ +-.++.+|.|+-.+. .....| .+......||||||+|.+ ++.++..|
T Consensus 612 lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka---~~~v~~~L 688 (852)
T TIGR03345 612 TALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKA---HPDVLELF 688 (852)
T ss_pred HHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhc---CHHHHHHH
Confidence 456777777 346889998773211 000011 112246789999999966 45577788
Q ss_pred HHHHHh-------------cCCcEEEEecCCCC-----------------------------CCcccccc-eeeEEcCCC
Q 005137 67 QQIAEK-------------AKGPVILTSNSNNI-----------------------------TLPDSLDR-LEVSFTMPM 103 (712)
Q Consensus 67 ~~Liek-------------TKrPIILTCND~n~-----------------------------~Lpkllsr-l~IrFkrPs 103 (712)
.+++.. .++-||||+|-... ..|..+.| ..|.|++.+
T Consensus 689 lq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs 768 (852)
T TIGR03345 689 YQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLD 768 (852)
T ss_pred HHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCC
Confidence 888764 34678888884210 11223345 568999999
Q ss_pred HHHHHHHHHHHHH--------HcCC--CCCHHHHHHHHHHcCC---cHHHHHHHHHHHhh
Q 005137 104 PKDLLSHLQMICA--------AEKV--ELQQHLLVQLIESCRA---DIRKTIMHLQFWCQ 150 (712)
Q Consensus 104 ~~eI~srL~~Ic~--------~EGi--kId~~~L~~LI~~S~G---DIRqaLN~LQf~s~ 150 (712)
.+++...+..-.. +.|+ .+++++++.|++.+.+ +.|...+.+|....
T Consensus 769 ~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~ 828 (852)
T TIGR03345 769 DDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLL 828 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHH
Confidence 9887776654321 2254 6899999999998876 89999998886443
No 142
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=91.92 E-value=1 Score=46.90 Aligned_cols=119 Identities=15% Similarity=0.099 Sum_probs=75.6
Q ss_pred hhhHHHhhCCCcEEEEeCCCccccc----c---------------------------cccccCC--CCCCcEEEEeCCCC
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDENS----H---------------------------GVMGKSD--NHVKPLILIEDVDV 54 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~rn----~---------------------------~v~gsl~--~~kkkLILIDEVD~ 54 (712)
.+.++|+.+|+.++.+|++.+.... . +..|.+. .....++++||+|.
T Consensus 37 lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r 116 (262)
T TIGR02640 37 LAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTR 116 (262)
T ss_pred HHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHHHHHcCCEEEEcchhh
Confidence 4567888999999999987632110 0 0011111 02346999999999
Q ss_pred CChhhHHHHHHHHHHHHhc------------------CCcEEEEecCCC-C---CCc-ccccc-eeeEEcCCCHHHHHHH
Q 005137 55 FFPEDRGFIAGIQQIAEKA------------------KGPVILTSNSNN-I---TLP-DSLDR-LEVSFTMPMPKDLLSH 110 (712)
Q Consensus 55 LfeeDrGf~~AL~~LiekT------------------KrPIILTCND~n-~---~Lp-kllsr-l~IrFkrPs~~eI~sr 110 (712)
+..+ .+.+|..+++.. ...||+|+|... . .++ .+++| ..+.+..|+.++....
T Consensus 117 ~~~~---~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~I 193 (262)
T TIGR02640 117 SKPE---TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDYPDIDTETAI 193 (262)
T ss_pred CCHH---HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHhhcEEEECCCCCHHHHHHH
Confidence 8665 556666666531 224899999742 1 122 34566 6688888998777776
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHc
Q 005137 111 LQMICAAEKVELQQHLLVQLIESC 134 (712)
Q Consensus 111 L~~Ic~~EGikId~~~L~~LI~~S 134 (712)
|..- ..+++..+++|+...
T Consensus 194 l~~~-----~~~~~~~~~~iv~~~ 212 (262)
T TIGR02640 194 LRAK-----TDVAEDSAATIVRLV 212 (262)
T ss_pred HHHh-----hCCCHHHHHHHHHHH
Confidence 6543 357788888877754
No 143
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=91.68 E-value=0.34 Score=52.02 Aligned_cols=143 Identities=17% Similarity=0.238 Sum_probs=87.4
Q ss_pred cChhhHHHhhCCCcEEEEeCCCcc----c---c---cccccccCCCCCCcEEEEeCCCCCCh--------hhHHHHHHHH
Q 005137 6 TVSLCEAAQHADDEVVEVIHIPDD----E---N---SHGVMGKSDNHVKPLILIEDVDVFFP--------EDRGFIAGIQ 67 (712)
Q Consensus 6 a~~~~aIAkelGydVIELNASDdR----~---r---n~~v~gsl~~~kkkLILIDEVD~Lfe--------eDrGf~~AL~ 67 (712)
.+.++++|.+-.-.+|.+..|.-- + | --+++. ..+.+++|+|||+|.+.. +|..-++.+.
T Consensus 195 tLlaraVahht~c~firvsgselvqk~igegsrmvrelfvma--rehapsiifmdeidsigs~r~e~~~ggdsevqrtml 272 (404)
T KOG0728|consen 195 TLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMA--REHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTML 272 (404)
T ss_pred hHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHH--HhcCCceEeeecccccccccccCCCCccHHHHHHHH
Confidence 467889999999999999888721 1 1 122332 135689999999999932 3665667777
Q ss_pred HHHHh-------cCCcEEEEecCCCCCCccccc--c--eeeEEcCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHH
Q 005137 68 QIAEK-------AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICA----AEKVELQQHLLVQLIE 132 (712)
Q Consensus 68 ~Liek-------TKrPIILTCND~n~~Lpklls--r--l~IrFkrPs~~eI~srL~~Ic~----~EGikId~~~L~~LI~ 132 (712)
+++++ .++-+|+.+|.....=|.++. | ..|.|.+|+.+.=...|.--.. ..|+.+ ..+.+++.-
T Consensus 273 ellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l-~kiaekm~g 351 (404)
T KOG0728|consen 273 ELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINL-RKIAEKMPG 351 (404)
T ss_pred HHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCH-HHHHHhCCC
Confidence 77765 356799999987643333332 2 5799999886543333332222 334443 233344444
Q ss_pred HcCCcHHHHHHHHHHHhhc
Q 005137 133 SCRADIRKTIMHLQFWCQN 151 (712)
Q Consensus 133 ~S~GDIRqaLN~LQf~s~s 151 (712)
.++.++...-...-.|+..
T Consensus 352 asgaevk~vcteagm~alr 370 (404)
T KOG0728|consen 352 ASGAEVKGVCTEAGMYALR 370 (404)
T ss_pred CccchhhhhhhhhhHHHHH
Confidence 4566666665555555544
No 144
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=91.35 E-value=0.32 Score=56.12 Aligned_cols=100 Identities=15% Similarity=0.219 Sum_probs=58.7
Q ss_pred CCcEEEEeCCCCCChh-------h--HHHHHHHHHHHH----hcCCcEEEEecCCCCCCccccc--c--eeeEEcCCCHH
Q 005137 43 VKPLILIEDVDVFFPE-------D--RGFIAGIQQIAE----KAKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPK 105 (712)
Q Consensus 43 kkkLILIDEVD~Lfee-------D--rGf~~AL~~Lie----kTKrPIILTCND~n~~Lpklls--r--l~IrFkrPs~~ 105 (712)
++.+|+|||+|.++.. | +..+.++...+. ..++.||.++|.....=+.++. | ..|.|.+|+.+
T Consensus 289 ~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e 368 (512)
T TIGR03689 289 RPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAE 368 (512)
T ss_pred CCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHH
Confidence 4679999999999642 1 112233333332 1345677778876543333443 4 57999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHH
Q 005137 106 DLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMH 144 (712)
Q Consensus 106 eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~ 144 (712)
+....+..... ..+.++++ +.........|+...+..
T Consensus 369 ~r~~Il~~~l~-~~l~l~~~-l~~~~g~~~a~~~al~~~ 405 (512)
T TIGR03689 369 AAADIFSKYLT-DSLPLDAD-LAEFDGDREATAAALIQR 405 (512)
T ss_pred HHHHHHHHHhh-ccCCchHH-HHHhcCCCHHHHHHHHHH
Confidence 88888877653 45666433 333333344444444443
No 145
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.06 E-value=0.21 Score=57.04 Aligned_cols=103 Identities=14% Similarity=0.127 Sum_probs=71.4
Q ss_pred CcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCC---CCCcccccc-----eeeEEcCCCHHHHHHHHHH
Q 005137 44 KPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNN---ITLPDSLDR-----LEVSFTMPMPKDLLSHLQM 113 (712)
Q Consensus 44 kkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n---~~Lpkllsr-----l~IrFkrPs~~eI~srL~~ 113 (712)
--||++||.|.+-..+++-+.+|=++-+. +++=+|-++|... ..+|++..+ ..+.|++-+.++|...|+.
T Consensus 257 ~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~ 336 (529)
T KOG2227|consen 257 MLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQ 336 (529)
T ss_pred eEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHH
Confidence 45899999999976666544444333322 3344666788864 356665542 5789999999999999987
Q ss_pred HHHHcCCCC-CHHHHHHHHH---HcCCcHHHHHHHHH
Q 005137 114 ICAAEKVEL-QQHLLVQLIE---SCRADIRKTIMHLQ 146 (712)
Q Consensus 114 Ic~~EGikI-d~~~L~~LI~---~S~GDIRqaLN~LQ 146 (712)
=...+-..+ -+.+|+-++. +.-||+|++|.-.+
T Consensus 337 rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 337 RLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred HHhcccccccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 666665544 4446666654 46899999998777
No 146
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=91.04 E-value=0.49 Score=52.09 Aligned_cols=127 Identities=15% Similarity=0.248 Sum_probs=77.4
Q ss_pred cChhhHHHhhCCCcEEEEeCCCcccc----cc-ccc---ccCCCCCCcEEEEeCCCCCC--------hhhHHHHHHHHHH
Q 005137 6 TVSLCEAAQHADDEVVEVIHIPDDEN----SH-GVM---GKSDNHVKPLILIEDVDVFF--------PEDRGFIAGIQQI 69 (712)
Q Consensus 6 a~~~~aIAkelGydVIELNASDdR~r----n~-~v~---gsl~~~kkkLILIDEVD~Lf--------eeDrGf~~AL~~L 69 (712)
++.+.++|..+|.+++-+-||.=..+ .+ .+. +.-..+.+-||+|||+|... ..||--++.|.++
T Consensus 180 Tlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeL 259 (388)
T KOG0651|consen 180 TLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMEL 259 (388)
T ss_pred hHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHH
Confidence 46788999999999999999872111 00 000 00012345789999999882 2388888899998
Q ss_pred HHh-------cCCcEEEEecCCCCCCcccccc--e--eeEEcCCCHHHHHHHHHHHHH--HcCC----CCCHHHHHHHHH
Q 005137 70 AEK-------AKGPVILTSNSNNITLPDSLDR--L--EVSFTMPMPKDLLSHLQMICA--AEKV----ELQQHLLVQLIE 132 (712)
Q Consensus 70 iek-------TKrPIILTCND~n~~Lpkllsr--l--~IrFkrPs~~eI~srL~~Ic~--~EGi----kId~~~L~~LI~ 132 (712)
+.. .++|+|++.|+++..-|+++.. + .+....|+ .++||. |.+ ...+ .|+.+.+-+++.
T Consensus 260 lnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpn---e~~r~~-I~Kih~~~i~~~Geid~eaivK~~d 335 (388)
T KOG0651|consen 260 LNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPN---EQARLG-ILKIHVQPIDFHGEIDDEAILKLVD 335 (388)
T ss_pred HHhhccchhcccccEEEecCCccccchhhcCCccccceeccCCcc---hhhcee-eEeeccccccccccccHHHHHHHHh
Confidence 886 5799999999987533433321 2 23333333 334443 211 1111 355777777777
Q ss_pred HcCC
Q 005137 133 SCRA 136 (712)
Q Consensus 133 ~S~G 136 (712)
..+|
T Consensus 336 ~f~g 339 (388)
T KOG0651|consen 336 GFNG 339 (388)
T ss_pred ccCh
Confidence 6554
No 147
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=90.99 E-value=0.94 Score=50.88 Aligned_cols=138 Identities=14% Similarity=0.159 Sum_probs=84.4
Q ss_pred ChhhHHHhhCCCcEEEEeCCCcccc-------cccc-------cccCCCCCCcEEEEeCCCCCChh--------h---HH
Q 005137 7 VSLCEAAQHADDEVVEVIHIPDDEN-------SHGV-------MGKSDNHVKPLILIEDVDVFFPE--------D---RG 61 (712)
Q Consensus 7 ~~~~aIAkelGydVIELNASDdR~r-------n~~v-------~gsl~~~kkkLILIDEVD~Lfee--------D---rG 61 (712)
..+.++|+.++..++.++++.-... .... .+.+....+.+|+|||||.+... | .|
T Consensus 123 ~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~ 202 (412)
T PRK05342 123 LLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEG 202 (412)
T ss_pred HHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHH
Confidence 4567889999999999999762110 0000 01111235689999999999753 1 25
Q ss_pred HHHHHHHHHHhcC----------Cc-----EEEEecCCC----------------------------C------------
Q 005137 62 FIAGIQQIAEKAK----------GP-----VILTSNSNN----------------------------I------------ 86 (712)
Q Consensus 62 f~~AL~~LiekTK----------rP-----IILTCND~n----------------------------~------------ 86 (712)
.+.+|.++++.+. .| +|.|.|=.. .
T Consensus 203 vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~ 282 (412)
T PRK05342 203 VQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELL 282 (412)
T ss_pred HHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHH
Confidence 7789999997431 22 233333200 0
Q ss_pred ------------CCcccccc--eeeEEcCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc-----
Q 005137 87 ------------TLPDSLDR--LEVSFTMPMPKDLLSHLQ-----------MICAAEKV--ELQQHLLVQLIESC----- 134 (712)
Q Consensus 87 ------------~Lpkllsr--l~IrFkrPs~~eI~srL~-----------~Ic~~EGi--kId~~~L~~LI~~S----- 134 (712)
.+|..+.| ..+.|++.+.+++...+. .....+|+ .+++++++.|++.+
T Consensus 283 ~~~~~~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~ 362 (412)
T PRK05342 283 KQVEPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKT 362 (412)
T ss_pred HhcCHHHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCC
Confidence 12233344 467888999887777665 22345565 47899999999863
Q ss_pred -CCcHHHHHHH
Q 005137 135 -RADIRKTIMH 144 (712)
Q Consensus 135 -~GDIRqaLN~ 144 (712)
-+-+|+.|..
T Consensus 363 GAR~Lrriie~ 373 (412)
T PRK05342 363 GARGLRSILEE 373 (412)
T ss_pred CCchHHHHHHH
Confidence 3457777654
No 148
>CHL00095 clpC Clp protease ATP binding subunit
Probab=90.75 E-value=1 Score=54.53 Aligned_cols=133 Identities=18% Similarity=0.220 Sum_probs=84.3
Q ss_pred hhhHHHhhC---CCcEEEEeCCCcccc---c---cccccc--------C----CCCCCcEEEEeCCCCCChhhHHHHHHH
Q 005137 8 SLCEAAQHA---DDEVVEVIHIPDDEN---S---HGVMGK--------S----DNHVKPLILIEDVDVFFPEDRGFIAGI 66 (712)
Q Consensus 8 ~~~aIAkel---GydVIELNASDdR~r---n---~~v~gs--------l----~~~kkkLILIDEVD~LfeeDrGf~~AL 66 (712)
.+.++|+.+ +..++.++.|+-.+. + ....|. + .....+||||||||.+. ..++.+|
T Consensus 555 lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~---~~v~~~L 631 (821)
T CHL00095 555 LTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAH---PDIFNLL 631 (821)
T ss_pred HHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCC---HHHHHHH
Confidence 466788876 367999998873221 0 001111 1 12345899999999885 4577888
Q ss_pred HHHHHhc-------------CCcEEEEecCCCC-------------------------------------CCcccccc--
Q 005137 67 QQIAEKA-------------KGPVILTSNSNNI-------------------------------------TLPDSLDR-- 94 (712)
Q Consensus 67 ~~LiekT-------------KrPIILTCND~n~-------------------------------------~Lpkllsr-- 94 (712)
.++++.. ++=||||+|-... ..|..+.|
T Consensus 632 lq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid 711 (821)
T CHL00095 632 LQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLD 711 (821)
T ss_pred HHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCC
Confidence 8888752 3447888874311 00223455
Q ss_pred eeeEEcCCCHHHHHHHHHHHHH-------HcC--CCCCHHHHHHHHHHc------CCcHHHHHH
Q 005137 95 LEVSFTMPMPKDLLSHLQMICA-------AEK--VELQQHLLVQLIESC------RADIRKTIM 143 (712)
Q Consensus 95 l~IrFkrPs~~eI~srL~~Ic~-------~EG--ikId~~~L~~LI~~S------~GDIRqaLN 143 (712)
.+|.|++.+.+++...+..... ..| +.+++++++.|++.. ...||++|.
T Consensus 712 ~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~ 775 (821)
T CHL00095 712 EIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIM 775 (821)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHH
Confidence 4689999999888777665433 223 467999999999863 345666663
No 149
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=90.24 E-value=1.8 Score=51.37 Aligned_cols=142 Identities=15% Similarity=0.152 Sum_probs=83.4
Q ss_pred ChhhHHHhhCCCcEEEEeCCCcccc-c--------ccccccCCCCCCcEEEEeCCCCCChhhHHHHHHH-----HHHHH-
Q 005137 7 VSLCEAAQHADDEVVEVIHIPDDEN-S--------HGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGI-----QQIAE- 71 (712)
Q Consensus 7 ~~~~aIAkelGydVIELNASDdR~r-n--------~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL-----~~Lie- 71 (712)
..+.++|.|+|..+++++|-.-.+. + -.+... ....+-|++|||+|.+...-.++.+.+ .+++.
T Consensus 238 ~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A-~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~ 316 (802)
T KOG0733|consen 238 SLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQA-KSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTS 316 (802)
T ss_pred HHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHH-hccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHh
Confidence 4678999999999999999774321 0 000000 123467899999999976533343333 22222
Q ss_pred --h-----c-CCcEEEEe--cCCCCCCccccc--c--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc---
Q 005137 72 --K-----A-KGPVILTS--NSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESC--- 134 (712)
Q Consensus 72 --k-----T-KrPIILTC--ND~n~~Lpklls--r--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S--- 134 (712)
. + .-||+.|. |.+...=|.++. | ..|.+.-|+...=...|+.||..-.+.- +-...+|+..+
T Consensus 317 mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~~qlA~lTPGf 395 (802)
T KOG0733|consen 317 MDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDFKQLAKLTPGF 395 (802)
T ss_pred hhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCHHHHHhcCCCc
Confidence 1 1 13555554 555442233332 2 5799999999999999999998655532 22344455543
Q ss_pred -CCcHHHHHHHHHHHhh
Q 005137 135 -RADIRKTIMHLQFWCQ 150 (712)
Q Consensus 135 -~GDIRqaLN~LQf~s~ 150 (712)
+.|+-...-.--+.+.
T Consensus 396 VGADL~AL~~~Aa~vAi 412 (802)
T KOG0733|consen 396 VGADLMALCREAAFVAI 412 (802)
T ss_pred cchhHHHHHHHHHHHHH
Confidence 4465554444444443
No 150
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=90.05 E-value=0.92 Score=51.13 Aligned_cols=140 Identities=16% Similarity=0.117 Sum_probs=82.9
Q ss_pred ChhhHHHhhCCCcEEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCChh-----hHHHHHHHHHHHHh-
Q 005137 7 VSLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFPE-----DRGFIAGIQQIAEK- 72 (712)
Q Consensus 7 ~~~~aIAkelGydVIELNASDdR~r-----n~~v~gsl---~~~kkkLILIDEVD~Lfee-----DrGf~~AL~~Liek- 72 (712)
+.+-++|++.+..++.+..++--.+ .+.+...+ ....+.+|+|||+|.++.. +.+..+.+.+++..
T Consensus 291 ~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~ 370 (494)
T COG0464 291 LLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTEL 370 (494)
T ss_pred HHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHh
Confidence 4677899999999999999952221 00010000 1245789999999999654 11122444444332
Q ss_pred ----cCCc--EEEEecCCCCCCccccc--c--eeeEEcCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHH----HcCCc
Q 005137 73 ----AKGP--VILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVE-LQQHLLVQLIE----SCRAD 137 (712)
Q Consensus 73 ----TKrP--IILTCND~n~~Lpklls--r--l~IrFkrPs~~eI~srL~~Ic~~EGik-Id~~~L~~LI~----~S~GD 137 (712)
.... +|-++|.+...-+.++. | ..|.|..|+..+-...++......+.. ..+-.++.+++ .++.|
T Consensus 371 d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgad 450 (494)
T COG0464 371 DGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGAD 450 (494)
T ss_pred cCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHH
Confidence 1223 56666665432222333 4 578889999888777777766655553 33445555555 46677
Q ss_pred HHHHHHHHH
Q 005137 138 IRKTIMHLQ 146 (712)
Q Consensus 138 IRqaLN~LQ 146 (712)
|...+-..-
T Consensus 451 i~~i~~ea~ 459 (494)
T COG0464 451 IAALVREAA 459 (494)
T ss_pred HHHHHHHHH
Confidence 776665443
No 151
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=89.93 E-value=0.5 Score=41.36 Aligned_cols=77 Identities=9% Similarity=0.073 Sum_probs=46.2
Q ss_pred hhHHHhhC---CCcEEEEeCCCccccc------c-----cccccCCCCCCcEEEEeCCCCCChhh-HHHHHHHHHHHH--
Q 005137 9 LCEAAQHA---DDEVVEVIHIPDDENS------H-----GVMGKSDNHVKPLILIEDVDVFFPED-RGFIAGIQQIAE-- 71 (712)
Q Consensus 9 ~~aIAkel---GydVIELNASDdR~rn------~-----~v~gsl~~~kkkLILIDEVD~LfeeD-rGf~~AL~~Lie-- 71 (712)
.-.+++++ ++.++.+++.+..... . .........+..+|++||+|.+.... .++...+..+..
T Consensus 36 ~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~ 115 (151)
T cd00009 36 ARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR 115 (151)
T ss_pred HHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCcee
Confidence 34556665 8899999997744220 0 00011112357899999999994442 333444444433
Q ss_pred --hcCCcEEEEecCCC
Q 005137 72 --KAKGPVILTSNSNN 85 (712)
Q Consensus 72 --kTKrPIILTCND~n 85 (712)
..+++||+++|+..
T Consensus 116 ~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 116 IDRENVRVIGATNRPL 131 (151)
T ss_pred ccCCCeEEEEecCccc
Confidence 24678999999865
No 152
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=89.42 E-value=0.6 Score=49.79 Aligned_cols=68 Identities=7% Similarity=0.074 Sum_probs=54.0
Q ss_pred CCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCCCCCcccccc-eeeEEcCCCHHHHHHHHH
Q 005137 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLPDSLDR-LEVSFTMPMPKDLLSHLQ 112 (712)
Q Consensus 42 ~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n~~Lpkllsr-l~IrFkrPs~~eI~srL~ 112 (712)
.+.+++||+++|.|..+ +..||.++++. .+.=+||+|++....+|-+++| ..++|+.|..........
T Consensus 88 g~~KViII~~ae~mt~~---AANALLKtLEEPP~~t~fILit~~~~~LLpTIrSRCq~i~~~~p~~~~~~e~~~ 158 (263)
T PRK06581 88 SGYKVAIIYSAELMNLN---AANSCLKILEDAPKNSYIFLITSRAASIISTIRSRCFKINVRSSILHAYNELYS 158 (263)
T ss_pred CCcEEEEEechHHhCHH---HHHHHHHhhcCCCCCeEEEEEeCChhhCchhHhhceEEEeCCCCCHHHHHHHHH
Confidence 36799999999999875 66788888886 3344889999988878888999 789999998855544433
No 153
>PRK15115 response regulator GlrR; Provisional
Probab=89.17 E-value=3.3 Score=45.55 Aligned_cols=105 Identities=10% Similarity=0.165 Sum_probs=67.3
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhc-------------CCcEEEEecCCC-------CCCcccccc-eeeEEcC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSNN-------ITLPDSLDR-LEVSFTM 101 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekT-------------KrPIILTCND~n-------~~Lpkllsr-l~IrFkr 101 (712)
.+..|+|||||.|... .+..|.++++.. .++||++++..- .....++.+ ..+.+.-
T Consensus 228 ~~gtl~l~~i~~l~~~---~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~~~~i~l 304 (444)
T PRK15115 228 EGGTLFLDEIGDMPAP---LQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKI 304 (444)
T ss_pred CCCEEEEEccccCCHH---HHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhceeeecC
Confidence 4578999999999876 345666666542 347888887531 001112222 2344444
Q ss_pred CCH----HHH----HHHHHHHHHHcCC---CCCHHHHHHHHHHc-CCcHHHHHHHHHHHhh
Q 005137 102 PMP----KDL----LSHLQMICAAEKV---ELQQHLLVQLIESC-RADIRKTIMHLQFWCQ 150 (712)
Q Consensus 102 Ps~----~eI----~srL~~Ic~~EGi---kId~~~L~~LI~~S-~GDIRqaLN~LQf~s~ 150 (712)
|+. ++| ..++...+...|. .++++++..|..+. .||+|+.-|.++..+.
T Consensus 305 PpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~ 365 (444)
T PRK15115 305 PALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVA 365 (444)
T ss_pred CChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 442 223 3444455554442 48999999999998 9999999999987654
No 154
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=88.72 E-value=0.83 Score=54.48 Aligned_cols=133 Identities=9% Similarity=0.044 Sum_probs=84.3
Q ss_pred CCcEEEEeCCCcc------cc-cccccccC---CCCCCcEEEEeCCCCCChh------hHHHHHHHHHHHHhcCCcEEEE
Q 005137 17 DDEVVEVIHIPDD------EN-SHGVMGKS---DNHVKPLILIEDVDVFFPE------DRGFIAGIQQIAEKAKGPVILT 80 (712)
Q Consensus 17 GydVIELNASDdR------~r-n~~v~gsl---~~~kkkLILIDEVD~Lfee------DrGf~~AL~~LiekTKrPIILT 80 (712)
|+.++++|.+.-. +. ....+..+ ....+.||+|||+|.+... +......|...+.....-+|-+
T Consensus 238 ~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~Iga 317 (731)
T TIGR02639 238 NAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGS 317 (731)
T ss_pred CCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEe
Confidence 7889999865421 00 00011111 1224679999999998642 1112344566666666667777
Q ss_pred ecCC--CCC--Cc-ccccc-eeeEEcCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC---c---HHHHHHH
Q 005137 81 SNSN--NIT--LP-DSLDR-LEVSFTMPMPKDLLSHLQMICAA----EKVELQQHLLVQLIESCRA---D---IRKTIMH 144 (712)
Q Consensus 81 CND~--n~~--Lp-kllsr-l~IrFkrPs~~eI~srL~~Ic~~----EGikId~~~L~~LI~~S~G---D---IRqaLN~ 144 (712)
+|.. ++. +. .+..| ..|.+..|+.++....|+.+... .++.+++++|..++..+++ | -+++|..
T Consensus 318 Tt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~l 397 (731)
T TIGR02639 318 TTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDV 397 (731)
T ss_pred cCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHH
Confidence 7752 111 12 23344 57999999999999999987654 3578999999999988754 3 4567777
Q ss_pred HHHHh
Q 005137 145 LQFWC 149 (712)
Q Consensus 145 LQf~s 149 (712)
|.-.+
T Consensus 398 ld~a~ 402 (731)
T TIGR02639 398 IDEAG 402 (731)
T ss_pred HHHhh
Confidence 76444
No 155
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=88.16 E-value=1.1 Score=54.75 Aligned_cols=105 Identities=12% Similarity=0.119 Sum_probs=72.9
Q ss_pred CCcEEEEeCCCCCChh--hHH---HHHHHHHHHHhcCCcEEEEecCC--CCC---Ccccccc-eeeEEcCCCHHHHHHHH
Q 005137 43 VKPLILIEDVDVFFPE--DRG---FIAGIQQIAEKAKGPVILTSNSN--NIT---LPDSLDR-LEVSFTMPMPKDLLSHL 111 (712)
Q Consensus 43 kkkLILIDEVD~Lfee--DrG---f~~AL~~LiekTKrPIILTCND~--n~~---Lpkllsr-l~IrFkrPs~~eI~srL 111 (712)
.+.|++|||++.+... ..| .-..|...+......+|.++|.. ++. -+.+..| ..|.+..|+.++....|
T Consensus 280 ~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL 359 (852)
T TIGR03345 280 QPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRML 359 (852)
T ss_pred CCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHH
Confidence 4679999999999741 112 22346677777887788888763 221 1234455 67999999999999998
Q ss_pred HHHHHH----cCCCCCHHHHHHHHHHcCCc------HHHHHHHHHH
Q 005137 112 QMICAA----EKVELQQHLLVQLIESCRAD------IRKTIMHLQF 147 (712)
Q Consensus 112 ~~Ic~~----EGikId~~~L~~LI~~S~GD------IRqaLN~LQf 147 (712)
+.+... .++.++++++..++..+.+= --++|..|-.
T Consensus 360 ~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdllde 405 (852)
T TIGR03345 360 RGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDT 405 (852)
T ss_pred HHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHH
Confidence 777643 46899999999999987532 2356655553
No 156
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=87.93 E-value=2.4 Score=46.07 Aligned_cols=106 Identities=13% Similarity=0.082 Sum_probs=69.4
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhc-------------CCcEEEEecCCC-------CCCcccccce-eeEEcC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSNN-------ITLPDSLDRL-EVSFTM 101 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekT-------------KrPIILTCND~n-------~~Lpkllsrl-~IrFkr 101 (712)
....|+|||||.|... .+..|..+++.. .++||+++|..- ..-+.++.++ .+.+.-
T Consensus 93 ~gGtL~Ldei~~L~~~---~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~~~~i~l 169 (329)
T TIGR02974 93 DGGTLFLDELATASLL---VQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLAFDVITL 169 (329)
T ss_pred CCCEEEeCChHhCCHH---HHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhcchhcCC
Confidence 4688999999999876 345666666542 246888886531 1112344442 334444
Q ss_pred CCH----HHH----HHHHHHHHHHcC----CCCCHHHHHHHHHHc-CCcHHHHHHHHHHHhhc
Q 005137 102 PMP----KDL----LSHLQMICAAEK----VELQQHLLVQLIESC-RADIRKTIMHLQFWCQN 151 (712)
Q Consensus 102 Ps~----~eI----~srL~~Ic~~EG----ikId~~~L~~LI~~S-~GDIRqaLN~LQf~s~s 151 (712)
|+. ++| ..+|...+.+.| ..+++++++.|..+. -|++|+.-|.++..+..
T Consensus 170 PpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~ 232 (329)
T TIGR02974 170 PPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYR 232 (329)
T ss_pred CchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 442 223 334555666555 358999999999997 99999999999876654
No 157
>PRK05907 hypothetical protein; Provisional
Probab=87.59 E-value=1.9 Score=46.65 Aligned_cols=110 Identities=10% Similarity=0.014 Sum_probs=76.1
Q ss_pred cCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhcC--CcEE-EEec-CCCCCCcccccc-eee----EEcCCCHHHHH
Q 005137 38 KSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAK--GPVI-LTSN-SNNITLPDSLDR-LEV----SFTMPMPKDLL 108 (712)
Q Consensus 38 sl~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekTK--rPII-LTCN-D~n~~Lpkllsr-l~I----rFkrPs~~eI~ 108 (712)
.+++ .+++|++...+.+.+ ....+|.++++.-. .=+| ++.+ |+...+.+-+.. ..+ .|.++...++.
T Consensus 65 PfFa-erRlV~v~~~~~~~~---~~~~~L~~Yl~np~~~~~liv~~~~~d~~kkl~K~i~k~~~v~~~~e~~~l~e~~L~ 140 (311)
T PRK05907 65 GLFA-SQETIGIYQAEKMSS---STQEFLIRYARNPNPHLTLFLFTTKQECFSSLSKKLSSALCLSLFGEWFADRDKRIA 140 (311)
T ss_pred Cccc-CeEEEEEeccccccc---ccHHHHHHHHhCCCCCeEEEEEEecccHHHHHHHHHhhcceeccccccCCCCHHHHH
Confidence 3455 457777777665543 23457777777531 1133 4442 111111121222 344 79999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHc-CCcHHHHHHHHHHHhhc
Q 005137 109 SHLQMICAAEKVELQQHLLVQLIESC-RADIRKTIMHLQFWCQN 151 (712)
Q Consensus 109 srL~~Ic~~EGikId~~~L~~LI~~S-~GDIRqaLN~LQf~s~s 151 (712)
.++...+.++|+.+++++++.|+..+ ++|+..+.|.|+-.+.-
T Consensus 141 ~Wi~~~~~~~g~~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly 184 (311)
T PRK05907 141 QLLIQRAKELGISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQ 184 (311)
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHccCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999 69999999999977654
No 158
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=87.37 E-value=3.6 Score=50.13 Aligned_cols=138 Identities=19% Similarity=0.166 Sum_probs=86.5
Q ss_pred hhhHHHhhC---CCcEEEEeCCCcccc---c---cccc--------ccC----CCCCCcEEEEeCCCCCChhhHHHHHHH
Q 005137 8 SLCEAAQHA---DDEVVEVIHIPDDEN---S---HGVM--------GKS----DNHVKPLILIEDVDVFFPEDRGFIAGI 66 (712)
Q Consensus 8 ~~~aIAkel---GydVIELNASDdR~r---n---~~v~--------gsl----~~~kkkLILIDEVD~LfeeDrGf~~AL 66 (712)
.+.++|+.+ +..++-+|.|.--.. . +... |.+ ......+|||||||.+.. ..+..|
T Consensus 611 lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~---~v~~~L 687 (852)
T TIGR03346 611 LAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHP---DVFNVL 687 (852)
T ss_pred HHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCH---HHHHHH
Confidence 456777765 467899998873221 0 0001 111 123457999999998854 467788
Q ss_pred HHHHHhc-------------CCcEEEEecCCCC-------------------------CCcccccc--eeeEEcCCCHHH
Q 005137 67 QQIAEKA-------------KGPVILTSNSNNI-------------------------TLPDSLDR--LEVSFTMPMPKD 106 (712)
Q Consensus 67 ~~LiekT-------------KrPIILTCND~n~-------------------------~Lpkllsr--l~IrFkrPs~~e 106 (712)
.++++.. ++-||+|+|-... ..|.++.| .++.|.+++.++
T Consensus 688 l~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~ 767 (852)
T TIGR03346 688 LQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQ 767 (852)
T ss_pred HHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHH
Confidence 8888642 2338888887221 11334455 478999999877
Q ss_pred HHHHHHHHHH-------HcC--CCCCHHHHHHHHHHc---CCcHHHHHHHHHHH
Q 005137 107 LLSHLQMICA-------AEK--VELQQHLLVQLIESC---RADIRKTIMHLQFW 148 (712)
Q Consensus 107 I~srL~~Ic~-------~EG--ikId~~~L~~LI~~S---~GDIRqaLN~LQf~ 148 (712)
+...+..... ..| +.+++++++.|+... .+.+|..-+.++-.
T Consensus 768 l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~ 821 (852)
T TIGR03346 768 IARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQRE 821 (852)
T ss_pred HHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHH
Confidence 7666654432 223 578999999999973 35666666655543
No 159
>PRK13695 putative NTPase; Provisional
Probab=87.11 E-value=1.6 Score=42.09 Aligned_cols=70 Identities=14% Similarity=0.228 Sum_probs=48.1
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhcCCcEEEEecCCCC--CCcccccc---eeeEEcCCCHHHHHHHHHH
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSNNI--TLPDSLDR---LEVSFTMPMPKDLLSHLQM 113 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekTKrPIILTCND~n~--~Lpkllsr---l~IrFkrPs~~eI~srL~~ 113 (712)
+..+||+||+..+-..+.++..+|.+++ ....|+|++.|+... ...++..+ ..+.+.+-+.+++..++..
T Consensus 96 ~~~~lllDE~~~~e~~~~~~~~~l~~~~-~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~ 170 (174)
T PRK13695 96 EADVIIIDEIGKMELKSPKFVKAVEEVL-DSEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILN 170 (174)
T ss_pred CCCEEEEECCCcchhhhHHHHHHHHHHH-hCCCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHH
Confidence 5789999998665444788889999998 567899999998532 12222222 5566766666666665544
No 160
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=87.06 E-value=0.88 Score=49.28 Aligned_cols=132 Identities=16% Similarity=0.197 Sum_probs=84.8
Q ss_pred ChhhHHHhhCCCcEEEEeCCCcccc--------c--ccccccCCCCCCcEEEEeCCCCCChhhHHHH---HHHHHHHH--
Q 005137 7 VSLCEAAQHADDEVVEVIHIPDDEN--------S--HGVMGKSDNHVKPLILIEDVDVFFPEDRGFI---AGIQQIAE-- 71 (712)
Q Consensus 7 ~~~~aIAkelGydVIELNASDdR~r--------n--~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~---~AL~~Lie-- 71 (712)
..+.++|++.+..++=++|..=++. . .+-.. .+..+-+|+|||.|.+.- ||+++ +.+.++++
T Consensus 166 m~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA--~~~aPcivFiDE~DAiaL-dRryQelRGDVsEiVNAL 242 (368)
T COG1223 166 MMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERA--RKAAPCIVFIDELDAIAL-DRRYQELRGDVSEIVNAL 242 (368)
T ss_pred HHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHH--HhcCCeEEEehhhhhhhh-hhhHHHhcccHHHHHHHH
Confidence 4578999999999999999773321 0 00000 122467899999999832 33332 12222222
Q ss_pred -----h--cCCcEE--EEecCCCCCCcccccc--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----cCC
Q 005137 72 -----K--AKGPVI--LTSNSNNITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIES----CRA 136 (712)
Q Consensus 72 -----k--TKrPII--LTCND~n~~Lpkllsr--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~----S~G 136 (712)
- .+-=|+ ..+|.++..=+..++| ..|.|+-|+.++....|+.-+++--++++.. +..++.. ++.
T Consensus 243 LTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g~SgR 321 (368)
T COG1223 243 LTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKGMSGR 321 (368)
T ss_pred HHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhCCCCch
Confidence 1 122344 4446655433456677 7899999999999999999999888877655 6666655 567
Q ss_pred cHHHHH
Q 005137 137 DIRKTI 142 (712)
Q Consensus 137 DIRqaL 142 (712)
||-.-+
T Consensus 322 dikekv 327 (368)
T COG1223 322 DIKEKV 327 (368)
T ss_pred hHHHHH
Confidence 876443
No 161
>CHL00195 ycf46 Ycf46; Provisional
Probab=86.55 E-value=4.2 Score=46.89 Aligned_cols=98 Identities=17% Similarity=0.444 Sum_probs=75.4
Q ss_pred CcEEEEeCCCCCChhhHHHHHHHHHHHHh---cCCcEEEEecCCCCCCcccccc--eeeEEcCCCHHHHHHHHHHHHHHc
Q 005137 44 KPLILIEDVDVFFPEDRGFIAGIQQIAEK---AKGPVILTSNSNNITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAE 118 (712)
Q Consensus 44 kkLILIDEVD~LfeeDrGf~~AL~~Liek---TKrPIILTCND~n~~Lpkllsr--l~IrFkrPs~~eI~srL~~Ic~~E 118 (712)
+.++|+.|.+-..+ |....+.|..++.. +..-||++..+ ..+|..+.+ ..+.|.-|+.+++...|..++...
T Consensus 82 ~~~~vl~d~h~~~~-~~~~~r~l~~l~~~~~~~~~~~i~~~~~--~~~p~el~~~~~~~~~~lP~~~ei~~~l~~~~~~~ 158 (489)
T CHL00195 82 PALFLLKDFNRFLN-DISISRKLRNLSRILKTQPKTIIIIASE--LNIPKELKDLITVLEFPLPTESEIKKELTRLIKSL 158 (489)
T ss_pred CcEEEEecchhhhc-chHHHHHHHHHHHHHHhCCCEEEEEcCC--CCCCHHHHhceeEEeecCcCHHHHHHHHHHHHHhc
Confidence 57999999999984 45556666665543 33447777765 346777777 578999999999999999999888
Q ss_pred CCCCCHHHHHHHHHHcCC----cHHHHHHH
Q 005137 119 KVELQQHLLVQLIESCRA----DIRKTIMH 144 (712)
Q Consensus 119 GikId~~~L~~LI~~S~G----DIRqaLN~ 144 (712)
++.++++.++.|++.+.| |+|+++..
T Consensus 159 ~~~~~~~~~~~l~~~~~gls~~~~~~~~~~ 188 (489)
T CHL00195 159 NIKIDSELLENLTRACQGLSLERIRRVLSK 188 (489)
T ss_pred CCCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999998654 66777653
No 162
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=86.28 E-value=5.5 Score=45.63 Aligned_cols=105 Identities=12% Similarity=0.168 Sum_probs=67.0
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhc-------------CCcEEEEecCCC-------CCCcccccc-eeeEEcC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSNN-------ITLPDSLDR-LEVSFTM 101 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekT-------------KrPIILTCND~n-------~~Lpkllsr-l~IrFkr 101 (712)
.+..|+|||||.|... .+..|..+++.. .++||+++|..- ...+.++.+ ..+.+.-
T Consensus 290 ~~GtL~ldei~~L~~~---~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~l 366 (534)
T TIGR01817 290 DGGTLFLDEIGEISPA---FQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFL 366 (534)
T ss_pred CCCeEEEechhhCCHH---HHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeC
Confidence 4578999999999876 445666666542 256888886531 111222333 1233333
Q ss_pred CCH----HHH----HHHHHHHHHHcC--CCCCHHHHHHHHHHc-CCcHHHHHHHHHHHhh
Q 005137 102 PMP----KDL----LSHLQMICAAEK--VELQQHLLVQLIESC-RADIRKTIMHLQFWCQ 150 (712)
Q Consensus 102 Ps~----~eI----~srL~~Ic~~EG--ikId~~~L~~LI~~S-~GDIRqaLN~LQf~s~ 150 (712)
|+. ++| ..+|..++.+.| +.+++++++.|..+. -|++|+.-|.++....
T Consensus 367 PpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~ 426 (534)
T TIGR01817 367 PPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLERTAT 426 (534)
T ss_pred CCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 331 233 344445554444 579999999999996 9999999999986654
No 163
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=86.18 E-value=5 Score=43.41 Aligned_cols=111 Identities=14% Similarity=0.158 Sum_probs=75.4
Q ss_pred ccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhcCCc----EEEEe-cCCCC--CCcccccc----eeeEEcCCCHH
Q 005137 37 GKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGP----VILTS-NSNNI--TLPDSLDR----LEVSFTMPMPK 105 (712)
Q Consensus 37 gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekTKrP----IILTC-ND~n~--~Lpkllsr----l~IrFkrPs~~ 105 (712)
.++++. ++++.+...+.....+.+ .++.... ...| ++++. ++... .+.+.+.. ..+.+.++...
T Consensus 69 ~~lF~~-~~~v~l~~~~~~~~~~~~--~~l~~~~--~~~p~~~~~l~~~~~kl~~~~~~~k~~~~~~~~~~~~~~~~~~~ 143 (334)
T COG1466 69 PSLFGE-KRLVVLKNAEKKPNKDKN--LALLELA--ALLPSTDLLLLVESNKLDKAKKLTKWLKKLAKAVVVECKPLDEA 143 (334)
T ss_pred cccccC-CeeEEEECCCCCcCchhH--HHHHHHH--cCCCCCCEEEEEecCCcchHHHHHHHHHHhccCceEecCCCCHH
Confidence 345563 489999999888633322 1222222 2223 33333 33332 11122222 36889999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC
Q 005137 106 DLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNK 152 (712)
Q Consensus 106 eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~s~ 152 (712)
++..++...++..|+++++++++.|+...++|++.+-+.++..+.-.
T Consensus 144 ~l~~~i~~~~~~~~l~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~~ 190 (334)
T COG1466 144 ELPQWIKKRAKELGLKIDQEAIQLLLEALGGNLLAIAQEIEKLALYA 190 (334)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999998888887655543
No 164
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=85.56 E-value=2.1 Score=50.72 Aligned_cols=146 Identities=16% Similarity=0.153 Sum_probs=87.6
Q ss_pred cChhhHHHhhCCCcEEEEeCCCcc-------cc--cccccccCCCCCCcEEEEeCCCCCChh-hHHHHH----HHHHHHH
Q 005137 6 TVSLCEAAQHADDEVVEVIHIPDD-------EN--SHGVMGKSDNHVKPLILIEDVDVFFPE-DRGFIA----GIQQIAE 71 (712)
Q Consensus 6 a~~~~aIAkelGydVIELNASDdR-------~r--n~~v~gsl~~~kkkLILIDEVD~Lfee-DrGf~~----AL~~Lie 71 (712)
+|.+-|+|+|.|.++|-+-.-.=- +| .+.+... -...+-+|+|||+|.|... +.++.. -+.+++-
T Consensus 559 TLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRA-R~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLt 637 (802)
T KOG0733|consen 559 TLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRA-RASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLT 637 (802)
T ss_pred HHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHh-hcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHH
Confidence 567889999999999987664410 11 0111110 1235789999999999542 222233 3344433
Q ss_pred h-------cCCcEEEEecCCCCCCccccc--c--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHH------H
Q 005137 72 K-------AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQH-LLVQLIE------S 133 (712)
Q Consensus 72 k-------TKrPIILTCND~n~~Lpklls--r--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~-~L~~LI~------~ 133 (712)
. ..+=||-.+|.+..+=|.++. | ..+....|+.++=...|+.+.+.-+..++++ .++.|+. +
T Consensus 638 ElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gf 717 (802)
T KOG0733|consen 638 ELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGF 717 (802)
T ss_pred HhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCC
Confidence 2 234355555665543333332 2 4566678899999999999999766665543 2444443 4
Q ss_pred cCCcHHHHHHHHHHHhhcC
Q 005137 134 CRADIRKTIMHLQFWCQNK 152 (712)
Q Consensus 134 S~GDIRqaLN~LQf~s~s~ 152 (712)
++.|+-..+..-.+.+...
T Consensus 718 tGADLaaLvreAsi~AL~~ 736 (802)
T KOG0733|consen 718 TGADLAALVREASILALRE 736 (802)
T ss_pred chhhHHHHHHHHHHHHHHH
Confidence 6788887777666665544
No 165
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=85.48 E-value=0.7 Score=51.54 Aligned_cols=133 Identities=17% Similarity=0.244 Sum_probs=85.3
Q ss_pred ChhhHHHhhCCCcEEEEeCCCcccc-----cccccc--cC-CCCCCcEEEEeCCCCCChh----hHHHHHHH-HHHHHh-
Q 005137 7 VSLCEAAQHADDEVVEVIHIPDDEN-----SHGVMG--KS-DNHVKPLILIEDVDVFFPE----DRGFIAGI-QQIAEK- 72 (712)
Q Consensus 7 ~~~~aIAkelGydVIELNASDdR~r-----n~~v~g--sl-~~~kkkLILIDEVD~Lfee----DrGf~~AL-~~Liek- 72 (712)
..+-++|++.|..++=+--|.=.++ ...++. ++ .+-++.+|.|||||.+... |+-..+.+ .+|+-.
T Consensus 142 mlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~W 221 (386)
T KOG0737|consen 142 MLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALW 221 (386)
T ss_pred HHHHHHHHHcCCCcceeeccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 3566899999999988887763222 111111 11 1346899999999999753 55444444 233331
Q ss_pred -------cCCcEEEEecCCCCCCcc-cccc--eeeEEcCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHH-cCCcHH
Q 005137 73 -------AKGPVILTSNSNNITLPD-SLDR--LEVSFTMPMPKDLLSHLQMICAAEKVE--LQQHLLVQLIES-CRADIR 139 (712)
Q Consensus 73 -------TKrPIILTCND~n~~Lpk-llsr--l~IrFkrPs~~eI~srL~~Ic~~EGik--Id~~~L~~LI~~-S~GDIR 139 (712)
..|=+|+-++++..-+-. .+.| ..+...-|...+=.+.|..|.+.|++. +|-..+..+.++ ++.||+
T Consensus 222 DGl~s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLk 301 (386)
T KOG0737|consen 222 DGLSSKDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLK 301 (386)
T ss_pred ccccCCCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHH
Confidence 235466666664332322 3344 567788899999999999999999985 555556655554 577887
No 166
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=85.20 E-value=2.2 Score=51.61 Aligned_cols=108 Identities=13% Similarity=0.112 Sum_probs=75.6
Q ss_pred CCcEEEEeCCCCCChh------hHHHHHHHHHHHHhcCCcEEEEecCCC--C--CC-cccccc-eeeEEcCCCHHHHHHH
Q 005137 43 VKPLILIEDVDVFFPE------DRGFIAGIQQIAEKAKGPVILTSNSNN--I--TL-PDSLDR-LEVSFTMPMPKDLLSH 110 (712)
Q Consensus 43 kkkLILIDEVD~Lfee------DrGf~~AL~~LiekTKrPIILTCND~n--~--~L-pkllsr-l~IrFkrPs~~eI~sr 110 (712)
.+.+|+|||+|.+... +..+...|..++...+..+|.++|... . .+ +.+..| ..|.+..|+.++....
T Consensus 278 ~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~I 357 (758)
T PRK11034 278 TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQI 357 (758)
T ss_pred CCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHH
Confidence 4579999999988432 222344567777778888888887531 1 11 223344 5799999999998888
Q ss_pred HHHHH----HHcCCCCCHHHHHHHHHHcCCcHH------HHHHHHHHHhh
Q 005137 111 LQMIC----AAEKVELQQHLLVQLIESCRADIR------KTIMHLQFWCQ 150 (712)
Q Consensus 111 L~~Ic----~~EGikId~~~L~~LI~~S~GDIR------qaLN~LQf~s~ 150 (712)
|+.+. ...++.+++.++..++..+..=|. ++|..|.-.+.
T Consensus 358 L~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a 407 (758)
T PRK11034 358 INGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGA 407 (758)
T ss_pred HHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHH
Confidence 88764 356789999999998887655443 77877776554
No 167
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=85.10 E-value=6.8 Score=43.19 Aligned_cols=106 Identities=13% Similarity=0.129 Sum_probs=68.7
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhc-------------CCcEEEEecCCC-------CCCcccccc-eeeEEcC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSNN-------ITLPDSLDR-LEVSFTM 101 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekT-------------KrPIILTCND~n-------~~Lpkllsr-l~IrFkr 101 (712)
.+..|+|||||.|... .+..|.++++.. .++||++++..- ..-+.++.+ ..+.+.-
T Consensus 233 ~~gtl~l~~i~~l~~~---~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~l 309 (445)
T TIGR02915 233 HGGTLFLDEIGDLPLN---LQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEISITI 309 (445)
T ss_pred CCCEEEEechhhCCHH---HHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHHHhccceecC
Confidence 4578999999999875 445666666542 347888887631 111223333 2334444
Q ss_pred CCH----HH----HHHHHHHHHHHcC---CCCCHHHHHHHHHHc-CCcHHHHHHHHHHHhhc
Q 005137 102 PMP----KD----LLSHLQMICAAEK---VELQQHLLVQLIESC-RADIRKTIMHLQFWCQN 151 (712)
Q Consensus 102 Ps~----~e----I~srL~~Ic~~EG---ikId~~~L~~LI~~S-~GDIRqaLN~LQf~s~s 151 (712)
|+. ++ +..+|..++...| ..++++++..|..+. .|++|+.-|.++..+..
T Consensus 310 PpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~ 371 (445)
T TIGR02915 310 PPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIM 371 (445)
T ss_pred CCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 442 22 3345555566555 458999999999886 89999999999866653
No 168
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=84.84 E-value=5.8 Score=42.92 Aligned_cols=106 Identities=12% Similarity=0.089 Sum_probs=69.4
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhc-------------CCcEEEEecCCC-------CCCcccccce-eeEEcC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSNN-------ITLPDSLDRL-EVSFTM 101 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekT-------------KrPIILTCND~n-------~~Lpkllsrl-~IrFkr 101 (712)
....++|||||.|... .+..|..+++.. .++||++++..- .....++.++ .+.+.-
T Consensus 100 ~gGtL~l~~i~~L~~~---~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~l 176 (326)
T PRK11608 100 DGGTLFLDELATAPML---VQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQL 176 (326)
T ss_pred CCCeEEeCChhhCCHH---HHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHHhcCCCEEEC
Confidence 4578999999999875 445666666542 356888876531 1113334442 334444
Q ss_pred CCH----HH----HHHHHHHHHHHcCC----CCCHHHHHHHHHHc-CCcHHHHHHHHHHHhhc
Q 005137 102 PMP----KD----LLSHLQMICAAEKV----ELQQHLLVQLIESC-RADIRKTIMHLQFWCQN 151 (712)
Q Consensus 102 Ps~----~e----I~srL~~Ic~~EGi----kId~~~L~~LI~~S-~GDIRqaLN~LQf~s~s 151 (712)
|+. ++ +..+|..++.+.|. .++++++..|..+. -|+||+.-|.++.....
T Consensus 177 PpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 177 PPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred CChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 442 22 33445566666553 48999999999885 89999999999876653
No 169
>PRK10865 protein disaggregation chaperone; Provisional
Probab=84.48 E-value=5.6 Score=48.71 Aligned_cols=124 Identities=21% Similarity=0.174 Sum_probs=77.1
Q ss_pred hhhHHHhhC---CCcEEEEeCCCcccc---c---cccccc------------CCCCCCcEEEEeCCCCCChhhHHHHHHH
Q 005137 8 SLCEAAQHA---DDEVVEVIHIPDDEN---S---HGVMGK------------SDNHVKPLILIEDVDVFFPEDRGFIAGI 66 (712)
Q Consensus 8 ~~~aIAkel---GydVIELNASDdR~r---n---~~v~gs------------l~~~kkkLILIDEVD~LfeeDrGf~~AL 66 (712)
.+.++|+.+ +..++.+|.++-... . +...|. +.....++|||||+|.+.. ..+..|
T Consensus 614 lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~---~v~~~L 690 (857)
T PRK10865 614 LCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHP---DVFNIL 690 (857)
T ss_pred HHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCH---HHHHHH
Confidence 356777765 456888888763221 0 000110 1112458999999998854 466777
Q ss_pred HHHHHhc-------------CCcEEEEecCCCC-------------------------CCcccccc--eeeEEcCCCHHH
Q 005137 67 QQIAEKA-------------KGPVILTSNSNNI-------------------------TLPDSLDR--LEVSFTMPMPKD 106 (712)
Q Consensus 67 ~~LiekT-------------KrPIILTCND~n~-------------------------~Lpkllsr--l~IrFkrPs~~e 106 (712)
.++++.. ++-||+|+|-... ..|.++.| ..+.|.+++.+.
T Consensus 691 l~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~ed 770 (857)
T PRK10865 691 LQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQH 770 (857)
T ss_pred HHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHH
Confidence 7777643 2238889886211 12334455 478899999988
Q ss_pred HHHHHHHHHHH-------cCC--CCCHHHHHHHHHHc
Q 005137 107 LLSHLQMICAA-------EKV--ELQQHLLVQLIESC 134 (712)
Q Consensus 107 I~srL~~Ic~~-------EGi--kId~~~L~~LI~~S 134 (712)
+...+...... .|+ .+++++++.|+...
T Consensus 771 l~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~g 807 (857)
T PRK10865 771 IASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENG 807 (857)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcC
Confidence 77766544322 244 57999999999864
No 170
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=84.23 E-value=7 Score=42.80 Aligned_cols=105 Identities=11% Similarity=0.063 Sum_probs=66.2
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhc-------------CCcEEEEecCCCC-------CCcccccc-eeeEEcC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSNNI-------TLPDSLDR-LEVSFTM 101 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekT-------------KrPIILTCND~n~-------~Lpkllsr-l~IrFkr 101 (712)
.+..|+|||||.|.... +..|.++++.. .++||++++..-. ..+.++.+ ..+.+.-
T Consensus 233 ~~gtl~ldei~~l~~~~---q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l~~~~i~~ 309 (441)
T PRK10365 233 DGGTLFLDEIGDISPMM---QVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEV 309 (441)
T ss_pred CCCEEEEeccccCCHHH---HHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecC
Confidence 35789999999998763 34566666543 2357777765310 01111222 2345554
Q ss_pred CCHH--------HHHHHHHHHHHHcC---CCCCHHHHHHHHHHc-CCcHHHHHHHHHHHhh
Q 005137 102 PMPK--------DLLSHLQMICAAEK---VELQQHLLVQLIESC-RADIRKTIMHLQFWCQ 150 (712)
Q Consensus 102 Ps~~--------eI~srL~~Ic~~EG---ikId~~~L~~LI~~S-~GDIRqaLN~LQf~s~ 150 (712)
|+.. -+..+|..++...| ..++++++..|..+. .||+|+.-|.++....
T Consensus 310 ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~ 370 (441)
T PRK10365 310 PSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVV 370 (441)
T ss_pred CChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 5432 23344455555444 358999999999988 9999999999987654
No 171
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=83.69 E-value=7.7 Score=45.43 Aligned_cols=106 Identities=13% Similarity=0.138 Sum_probs=68.0
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhc-------------CCcEEEEecCCC-------CCCcccccc-eeeEEcC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSNN-------ITLPDSLDR-LEVSFTM 101 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekT-------------KrPIILTCND~n-------~~Lpkllsr-l~IrFkr 101 (712)
....|+|||||-|... .+..|.++++.. .++||+++|..- ..-+.++.+ ..+.+.-
T Consensus 416 ~~GtL~ldei~~l~~~---~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~l 492 (638)
T PRK11388 416 HGGTLFLEKVEYLSPE---LQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITI 492 (638)
T ss_pred CCCEEEEcChhhCCHH---HHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHHhcCCChHHHhhhhceeEEeC
Confidence 3578999999999876 345666666542 345888877631 111222333 2344444
Q ss_pred CCH----HH----HHHHHHHHHHHcC--CCCCHHHHHHHHHHc-CCcHHHHHHHHHHHhhc
Q 005137 102 PMP----KD----LLSHLQMICAAEK--VELQQHLLVQLIESC-RADIRKTIMHLQFWCQN 151 (712)
Q Consensus 102 Ps~----~e----I~srL~~Ic~~EG--ikId~~~L~~LI~~S-~GDIRqaLN~LQf~s~s 151 (712)
|+. ++ +..+|..++.+-| +.+++++++.|..+. -|++|+.-|.++.....
T Consensus 493 PpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~l~~~~~~ 553 (638)
T PRK11388 493 PPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALS 553 (638)
T ss_pred CChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHHHHHHHHh
Confidence 442 22 3344455554433 568999999999998 99999999999976543
No 172
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=83.43 E-value=2.9 Score=49.76 Aligned_cols=128 Identities=14% Similarity=0.142 Sum_probs=83.3
Q ss_pred ChhhHHHhhCCCcEEEEeCCCcccc------c---ccccccCCCCC-CcEEEEeCCCCCCh------h-hHHHHHHHHHH
Q 005137 7 VSLCEAAQHADDEVVEVIHIPDDEN------S---HGVMGKSDNHV-KPLILIEDVDVFFP------E-DRGFIAGIQQI 69 (712)
Q Consensus 7 ~~~~aIAkelGydVIELNASDdR~r------n---~~v~gsl~~~k-kkLILIDEVD~Lfe------e-DrGf~~AL~~L 69 (712)
....++|++.|..++.+|+..-..+ . ..+... .+.+ +.+|++||+|.+.. + ++--.+++.++
T Consensus 233 ~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a-~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL 311 (693)
T KOG0730|consen 233 FLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEA-LKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTL 311 (693)
T ss_pred HHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHH-hccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHH
Confidence 3456899999999999999873211 0 111000 1223 79999999999964 1 33455667777
Q ss_pred HHhcC----CcEEEEecCCCCCCcccc-cc--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Q 005137 70 AEKAK----GPVILTSNSNNITLPDSL-DR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRA 136 (712)
Q Consensus 70 iekTK----rPIILTCND~n~~Lpkll-sr--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~G 136 (712)
+.-.+ .=+|-++|.++..-+.++ .| ..+...-|+...=...|+.++++-+.. ++..+..+...+.|
T Consensus 312 ~dg~~~~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thG 384 (693)
T KOG0730|consen 312 LDGLKPDAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHG 384 (693)
T ss_pred HhhCcCcCcEEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccc
Confidence 66543 323333455554333344 24 568889999888888888888888877 66777777776554
No 173
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=82.97 E-value=0.47 Score=42.63 Aligned_cols=37 Identities=19% Similarity=0.441 Sum_probs=33.0
Q ss_pred cEEEEeCCCCCChhhHHHHHHHHHHHHhcCCcEEEEecC
Q 005137 45 PLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNS 83 (712)
Q Consensus 45 kLILIDEVD~LfeeDrGf~~AL~~LiekTKrPIILTCND 83 (712)
.+|||||+|.++ ++.++..|..+.+..+++||++.++
T Consensus 89 ~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 599999999985 4778889988988899999999988
No 174
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=81.78 E-value=9.8 Score=43.88 Aligned_cols=105 Identities=14% Similarity=0.112 Sum_probs=68.9
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhc-------------CCcEEEEecCCC-------CCCcccccc-eeeEEcC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSNN-------ITLPDSLDR-LEVSFTM 101 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekT-------------KrPIILTCND~n-------~~Lpkllsr-l~IrFkr 101 (712)
....|+|||||-|+... +..|.++++.. .++||++++..- ...+.++.+ ..+.+.-
T Consensus 298 ~~GtL~LdeI~~L~~~~---Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~l 374 (520)
T PRK10820 298 NGGSVLLDEIGEMSPRM---QAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNL 374 (520)
T ss_pred CCCEEEEeChhhCCHHH---HHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeC
Confidence 35789999999998763 35666666542 235788776531 111224444 3345555
Q ss_pred CCH----HH----HHHHHHHHHHHcCC---CCCHHHHHHHHHH-cCCcHHHHHHHHHHHhh
Q 005137 102 PMP----KD----LLSHLQMICAAEKV---ELQQHLLVQLIES-CRADIRKTIMHLQFWCQ 150 (712)
Q Consensus 102 Ps~----~e----I~srL~~Ic~~EGi---kId~~~L~~LI~~-S~GDIRqaLN~LQf~s~ 150 (712)
|+. ++ +..+|...|.+-|. .+++++++.|..+ --|++|+.-|.+.-...
T Consensus 375 PpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~ 435 (520)
T PRK10820 375 PPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALT 435 (520)
T ss_pred CCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 553 22 23446666776664 6899999999998 69999999998876554
No 175
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=81.70 E-value=4.4 Score=48.67 Aligned_cols=108 Identities=13% Similarity=0.190 Sum_probs=69.0
Q ss_pred CCCcEEEEeCCCCCChhhHHHHHHHHHHHH-----hcCCcEEEEecCCCCC---Cc-ccccc---eeeEEcCCCHHHHHH
Q 005137 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAE-----KAKGPVILTSNSNNIT---LP-DSLDR---LEVSFTMPMPKDLLS 109 (712)
Q Consensus 42 ~kkkLILIDEVD~LfeeDrGf~~AL~~Lie-----kTKrPIILTCND~n~~---Lp-kllsr---l~IrFkrPs~~eI~s 109 (712)
.+..||||||.|.|-..-+ ..|..|.. .+|-=||.|+|..+.+ ++ +.-+| ..|.|.+-+..++..
T Consensus 507 ~~~~VvLiDElD~Lvtr~Q---dVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~ 583 (767)
T KOG1514|consen 507 RSTTVVLIDELDILVTRSQ---DVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQE 583 (767)
T ss_pred CCCEEEEeccHHHHhcccH---HHHHHHhcCCcCCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHH
Confidence 4578999999999965311 24455544 3566688888886532 21 11133 579999999887766
Q ss_pred HHHHHHHHcCC-CCCHHHHHHHH---HHcCCcHHHHHHHHHHHhhcCCC
Q 005137 110 HLQMICAAEKV-ELQQHLLVQLI---ESCRADIRKTIMHLQFWCQNKGY 154 (712)
Q Consensus 110 rL~~Ic~~EGi-kId~~~L~~LI---~~S~GDIRqaLN~LQf~s~s~~~ 154 (712)
.+..- -.|+ .+++++++-++ ....||.|+++.-........+.
T Consensus 584 Ii~~R--L~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~ 630 (767)
T KOG1514|consen 584 IISAR--LKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEE 630 (767)
T ss_pred HHHHh--hcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhh
Confidence 54432 2232 34555555543 44689999999998887776543
No 176
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=80.91 E-value=12 Score=42.86 Aligned_cols=106 Identities=12% Similarity=0.067 Sum_probs=69.2
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhc-------------CCcEEEEecCCC-------CCCcccccc-eeeEEcC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSNN-------ITLPDSLDR-LEVSFTM 101 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekT-------------KrPIILTCND~n-------~~Lpkllsr-l~IrFkr 101 (712)
....|+|||||.|... .+..|.++++.. .++||+++|..- .....++.+ ..+.+.-
T Consensus 281 ~gGtL~ldeI~~L~~~---~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~l 357 (509)
T PRK05022 281 DGGTLFLDEIGELPLA---LQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSV 357 (509)
T ss_pred CCCEEEecChhhCCHH---HHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHHHcCCccHHHHhcccccEeeC
Confidence 3567999999999865 445666666542 347999987641 111223333 2344544
Q ss_pred CCH----HHH----HHHHHHHHHHcC---CCCCHHHHHHHHHHc-CCcHHHHHHHHHHHhhc
Q 005137 102 PMP----KDL----LSHLQMICAAEK---VELQQHLLVQLIESC-RADIRKTIMHLQFWCQN 151 (712)
Q Consensus 102 Ps~----~eI----~srL~~Ic~~EG---ikId~~~L~~LI~~S-~GDIRqaLN~LQf~s~s 151 (712)
|+. ++| .-+|..++.+.| +.++++++..|..+. -|++|+.-|.++..+..
T Consensus 358 PpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~ 419 (509)
T PRK05022 358 PPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALL 419 (509)
T ss_pred CCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHh
Confidence 542 222 334555566544 579999999999885 89999999999876653
No 177
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=80.26 E-value=13 Score=41.02 Aligned_cols=106 Identities=13% Similarity=0.141 Sum_probs=68.0
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhc-------------CCcEEEEecCCC-------CCCcccccc-eeeEEcC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSNN-------ITLPDSLDR-LEVSFTM 101 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekT-------------KrPIILTCND~n-------~~Lpkllsr-l~IrFkr 101 (712)
.+..|+|||||.|... .+..|..+++.. .++||+++|..- ..-+.++.+ ..+.+.-
T Consensus 237 ~~gtl~ld~i~~l~~~---~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~~~~i~~ 313 (457)
T PRK11361 237 NEGTLLLDEIGEMPLV---LQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLIL 313 (457)
T ss_pred CCCEEEEechhhCCHH---HHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecC
Confidence 4579999999999775 456677776643 247888887531 111223333 2344444
Q ss_pred CCH----HH----HHHHHHHHHHHcC---CCCCHHHHHHHHHHc-CCcHHHHHHHHHHHhhc
Q 005137 102 PMP----KD----LLSHLQMICAAEK---VELQQHLLVQLIESC-RADIRKTIMHLQFWCQN 151 (712)
Q Consensus 102 Ps~----~e----I~srL~~Ic~~EG---ikId~~~L~~LI~~S-~GDIRqaLN~LQf~s~s 151 (712)
|+. ++ +..+|..++...| +.+++++++.|..+. -|++|+.-|.++.....
T Consensus 314 ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~ 375 (457)
T PRK11361 314 PPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVM 375 (457)
T ss_pred CChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHh
Confidence 442 22 3345555555444 358999999999886 89999999999866543
No 178
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=79.42 E-value=6.9 Score=33.58 Aligned_cols=40 Identities=13% Similarity=0.311 Sum_probs=28.4
Q ss_pred CcEEEEeCCCCCChhhHHHHH-------HHHHHHHhcCCcEEEEecC
Q 005137 44 KPLILIEDVDVFFPEDRGFIA-------GIQQIAEKAKGPVILTSNS 83 (712)
Q Consensus 44 kkLILIDEVD~LfeeDrGf~~-------AL~~LiekTKrPIILTCND 83 (712)
..+|++||++.+......... ............+|+++|.
T Consensus 79 ~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 79 PDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 499999999999876433322 1244455667889999996
No 179
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=79.14 E-value=10 Score=41.90 Aligned_cols=105 Identities=10% Similarity=0.136 Sum_probs=67.9
Q ss_pred CcEEEEeCCCCCChhhHHHHHHHHHHHHhc-------------CCcEEEEecCCC------CCC-cccccc-eeeEEcCC
Q 005137 44 KPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSNN------ITL-PDSLDR-LEVSFTMP 102 (712)
Q Consensus 44 kkLILIDEVD~LfeeDrGf~~AL~~LiekT-------------KrPIILTCND~n------~~L-pkllsr-l~IrFkrP 102 (712)
+..|+|||||.|.... +..|.++++.. .++||++++..- ..+ +.++.+ ..+.+.-|
T Consensus 229 ~gtl~l~ei~~l~~~~---q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lP 305 (463)
T TIGR01818 229 GGTLFLDEIGDMPLDA---QTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLNVIRIHLP 305 (463)
T ss_pred CCeEEEEchhhCCHHH---HHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhCcceecCC
Confidence 5679999999998763 45666666643 346888887531 111 133344 22344434
Q ss_pred C----HHHHH----HHHHHHHHHcC---CCCCHHHHHHHHHHc-CCcHHHHHHHHHHHhhc
Q 005137 103 M----PKDLL----SHLQMICAAEK---VELQQHLLVQLIESC-RADIRKTIMHLQFWCQN 151 (712)
Q Consensus 103 s----~~eI~----srL~~Ic~~EG---ikId~~~L~~LI~~S-~GDIRqaLN~LQf~s~s 151 (712)
+ .+++. .+|..++..-| ..++++++..|..+. -|++|+.-|.++..+..
T Consensus 306 pLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~ 366 (463)
T TIGR01818 306 PLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVM 366 (463)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 3 23333 44455555545 468999999999886 89999999999876653
No 180
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=78.07 E-value=7.6 Score=43.97 Aligned_cols=64 Identities=17% Similarity=0.105 Sum_probs=40.6
Q ss_pred ChhhHHHhhCCCcEEEEeCCCcccccccc---------------cccCCCCCCcEEEEeCCCCCChh--------h---H
Q 005137 7 VSLCEAAQHADDEVVEVIHIPDDENSHGV---------------MGKSDNHVKPLILIEDVDVFFPE--------D---R 60 (712)
Q Consensus 7 ~~~~aIAkelGydVIELNASDdR~rn~~v---------------~gsl~~~kkkLILIDEVD~Lfee--------D---r 60 (712)
..+.++|+.+|..++.++|+.-... .++ .+.+....+.+|+|||+|.+... | .
T Consensus 131 ~lAraLA~~l~~pf~~~da~~L~~~-gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~ 209 (413)
T TIGR00382 131 LLAQTLARILNVPFAIADATTLTEA-GYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGE 209 (413)
T ss_pred HHHHHHHHhcCCCeEEechhhcccc-ccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccch
Confidence 3567889999999988888652110 000 01111224569999999999752 1 1
Q ss_pred HHHHHHHHHHH
Q 005137 61 GFIAGIQQIAE 71 (712)
Q Consensus 61 Gf~~AL~~Lie 71 (712)
|-+.+|.++++
T Consensus 210 ~vq~~LL~iLe 220 (413)
T TIGR00382 210 GVQQALLKIIE 220 (413)
T ss_pred hHHHHHHHHhh
Confidence 56788888885
No 181
>PHA02244 ATPase-like protein
Probab=78.05 E-value=4.8 Score=45.30 Aligned_cols=96 Identities=20% Similarity=0.114 Sum_probs=58.6
Q ss_pred hhhHHHhhCCCcEEEEeCCCcccc-ccc--ccccCC-------CCCCcEEEEeCCCCCChhhHHHHHHHHHHHH------
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDEN-SHG--VMGKSD-------NHVKPLILIEDVDVFFPEDRGFIAGIQQIAE------ 71 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~r-n~~--v~gsl~-------~~kkkLILIDEVD~LfeeDrGf~~AL~~Lie------ 71 (712)
.++++|+.+|..++.+|+..+... ... ..+.+. .....+++|||+|.+...-.. .|..++.
T Consensus 135 LA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~~GgvLiLDEId~a~p~vq~---~L~~lLd~r~l~l 211 (383)
T PHA02244 135 IAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFKKGGLFFIDEIDASIPEALI---IINSAIANKFFDF 211 (383)
T ss_pred HHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhhcCCEEEEeCcCcCCHHHHH---HHHHHhccCeEEe
Confidence 567889999999999996432110 000 011111 124579999999999865433 3333332
Q ss_pred -------hcCCcEEEEecCCC----------C-CCcccccc-eeeEEcCCCHHH
Q 005137 72 -------KAKGPVILTSNSNN----------I-TLPDSLDR-LEVSFTMPMPKD 106 (712)
Q Consensus 72 -------kTKrPIILTCND~n----------~-~Lpkllsr-l~IrFkrPs~~e 106 (712)
.....+|+|+|... . .-+..++| ..|.|..|+..+
T Consensus 212 ~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv~I~~dyp~~~E 265 (383)
T PHA02244 212 ADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFAPIEFDYDEKIE 265 (383)
T ss_pred cCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcEEeeCCCCcHHH
Confidence 23567999999732 1 12345677 678999988544
No 182
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=78.04 E-value=4.3 Score=49.51 Aligned_cols=108 Identities=13% Similarity=0.095 Sum_probs=71.9
Q ss_pred CCcEEEEeCCCCCChh--hHH---HHHHHHHHHHhcCCcEEEEecCCC--C--CC-cccccc-eeeEEcCCCHHHHHHHH
Q 005137 43 VKPLILIEDVDVFFPE--DRG---FIAGIQQIAEKAKGPVILTSNSNN--I--TL-PDSLDR-LEVSFTMPMPKDLLSHL 111 (712)
Q Consensus 43 kkkLILIDEVD~Lfee--DrG---f~~AL~~LiekTKrPIILTCND~n--~--~L-pkllsr-l~IrFkrPs~~eI~srL 111 (712)
++.||+|||+|.+... ..| ....|...+.....++|.++|... . -+ +.+..| ..|.+..|+.++....|
T Consensus 266 ~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL 345 (852)
T TIGR03346 266 GQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISIL 345 (852)
T ss_pred CCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHH
Confidence 4679999999999741 222 334555566666777887777631 1 01 223344 46889999999988888
Q ss_pred HHHHHH----cCCCCCHHHHHHHHHHcC---Cc---HHHHHHHHHHHhh
Q 005137 112 QMICAA----EKVELQQHLLVQLIESCR---AD---IRKTIMHLQFWCQ 150 (712)
Q Consensus 112 ~~Ic~~----EGikId~~~L~~LI~~S~---GD---IRqaLN~LQf~s~ 150 (712)
+.+..+ .++.+.+.+|..++..+. .| -.++|..|...+.
T Consensus 346 ~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a 394 (852)
T TIGR03346 346 RGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAA 394 (852)
T ss_pred HHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHH
Confidence 766443 467889999998887654 23 3477777776554
No 183
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=76.83 E-value=18 Score=42.89 Aligned_cols=106 Identities=12% Similarity=0.089 Sum_probs=69.0
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhc-------------CCcEEEEecCCC------CCC-cccccc-eeeEEcC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSNN------ITL-PDSLDR-LEVSFTM 101 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekT-------------KrPIILTCND~n------~~L-pkllsr-l~IrFkr 101 (712)
.+..++|||||.|... .+..|..+++.. .++||+++|..- ..+ ..++.+ ..+.+.-
T Consensus 470 ~~GtL~Ldei~~L~~~---~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~l 546 (686)
T PRK15429 470 DKSSLFLDEVGDMPLE---LQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHL 546 (686)
T ss_pred CCCeEEEechhhCCHH---HHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeC
Confidence 3578999999999775 445666666542 346888887631 011 112233 2344444
Q ss_pred CCH----HH----HHHHHHHHHHHcCC---CCCHHHHHHHHHHc-CCcHHHHHHHHHHHhhc
Q 005137 102 PMP----KD----LLSHLQMICAAEKV---ELQQHLLVQLIESC-RADIRKTIMHLQFWCQN 151 (712)
Q Consensus 102 Ps~----~e----I~srL~~Ic~~EGi---kId~~~L~~LI~~S-~GDIRqaLN~LQf~s~s 151 (712)
|+. ++ +..++..++.+.|. .+++++++.|..+. -|++|+.-|.++-....
T Consensus 547 PpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~~i~~a~~~ 608 (686)
T PRK15429 547 PPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLL 608 (686)
T ss_pred CChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCcHHHHHHHHHHHHHh
Confidence 552 22 44556666766564 47899999998875 89999999999876653
No 184
>CHL00206 ycf2 Ycf2; Provisional
Probab=76.41 E-value=8.5 Score=51.08 Aligned_cols=111 Identities=5% Similarity=0.036 Sum_probs=70.1
Q ss_pred CCcEEEEeCCCCCChhhHHH--HHHHHHHHHh-----cCCcEEEEe--cCCCCCCccccc--c--eeeEEcCCCHHHHHH
Q 005137 43 VKPLILIEDVDVFFPEDRGF--IAGIQQIAEK-----AKGPVILTS--NSNNITLPDSLD--R--LEVSFTMPMPKDLLS 109 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf--~~AL~~Liek-----TKrPIILTC--ND~n~~Lpklls--r--l~IrFkrPs~~eI~s 109 (712)
.+-+|.|||+|.+...|..+ ++.|...+.. +.+.||+++ |.+...=|+++. | ..|.+++|+..+=..
T Consensus 1732 SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~k 1811 (2281)
T CHL00206 1732 SPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRK 1811 (2281)
T ss_pred CCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHH
Confidence 46789999999997665432 4555444431 234454443 444332233332 3 578889998777666
Q ss_pred HHHHHHHHcCCCCCHH--HHHHHHHH----cCCcHHHHHHHHHHHhhcCC
Q 005137 110 HLQMICAAEKVELQQH--LLVQLIES----CRADIRKTIMHLQFWCQNKG 153 (712)
Q Consensus 110 rL~~Ic~~EGikId~~--~L~~LI~~----S~GDIRqaLN~LQf~s~s~~ 153 (712)
++..+....|+.+.++ .++.|+.. ++.||...+|..-..+...+
T Consensus 1812 iL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ 1861 (2281)
T CHL00206 1812 HFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQK 1861 (2281)
T ss_pred HHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 6665566677776643 35666665 47899999998777766554
No 185
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=76.23 E-value=7.4 Score=40.70 Aligned_cols=74 Identities=22% Similarity=0.321 Sum_probs=49.0
Q ss_pred CCCcEEEEeCCCCCChh-hHHHHHHHHHHHHhcCCcEEEEecCCC--CCCc-------------ccccc---eeeEEcCC
Q 005137 42 HVKPLILIEDVDVFFPE-DRGFIAGIQQIAEKAKGPVILTSNSNN--ITLP-------------DSLDR---LEVSFTMP 102 (712)
Q Consensus 42 ~kkkLILIDEVD~Lfee-DrGf~~AL~~LiekTKrPIILTCND~n--~~Lp-------------kllsr---l~IrFkrP 102 (712)
.++-||+|||.|.+..+ -...+.+|..++...++-+|+.++... ..+. .-+++ ..+..+.|
T Consensus 171 ~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKiiq~~~~lP~~ 250 (325)
T PF07693_consen 171 KKRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKIIQVPFSLPPP 250 (325)
T ss_pred CceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHhhcCeEEEeCCC
Confidence 45678999999999665 566777888887777777788787531 1111 11222 34566667
Q ss_pred CHHHHHHHHHHHH
Q 005137 103 MPKDLLSHLQMIC 115 (712)
Q Consensus 103 s~~eI~srL~~Ic 115 (712)
...++..++....
T Consensus 251 ~~~~~~~~~~~~~ 263 (325)
T PF07693_consen 251 SPSDLERYLNELL 263 (325)
T ss_pred CHHHHHHHHHHHH
Confidence 7778888887763
No 186
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=74.06 E-value=27 Score=40.92 Aligned_cols=104 Identities=13% Similarity=0.126 Sum_probs=65.5
Q ss_pred CcEEEEeCCCCCChhhHHHHHHHHHHHHhc-------------CCcEEEEecCCCC-------CCcccccc-eeeEEcCC
Q 005137 44 KPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSNNI-------TLPDSLDR-LEVSFTMP 102 (712)
Q Consensus 44 kkLILIDEVD~LfeeDrGf~~AL~~LiekT-------------KrPIILTCND~n~-------~Lpkllsr-l~IrFkrP 102 (712)
+..|+|||||-|... .+..|..+++.. .++||+++|..-. .-..++.+ ..+.+.-|
T Consensus 323 gGTLfLdeI~~Lp~~---~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lP 399 (538)
T PRK15424 323 GGTLFLDEIGEMPLP---LQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLP 399 (538)
T ss_pred CCEEEEcChHhCCHH---HHHHHHhhhhcCeEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCC
Confidence 568999999999876 445666666542 2368888876310 11123334 34555555
Q ss_pred CH----HHH----HHHHHHHHHHcCCCCCHHHH-------HHHHHH-cCCcHHHHHHHHHHHhh
Q 005137 103 MP----KDL----LSHLQMICAAEKVELQQHLL-------VQLIES-CRADIRKTIMHLQFWCQ 150 (712)
Q Consensus 103 s~----~eI----~srL~~Ic~~EGikId~~~L-------~~LI~~-S~GDIRqaLN~LQf~s~ 150 (712)
+. ++| ..+|...+...+..++++++ +.|..+ --|++|+.-|.++-.+.
T Consensus 400 PLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i 463 (538)
T PRK15424 400 PLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLAL 463 (538)
T ss_pred ChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 53 233 34444555567888888877 445444 47999999999986654
No 187
>PF05729 NACHT: NACHT domain
Probab=72.99 E-value=8.6 Score=35.33 Aligned_cols=74 Identities=15% Similarity=0.236 Sum_probs=51.3
Q ss_pred CCCcEEEEeCCCCCChhhHH-----HHHHHHHHHHh---cCCcEEEEecCCCC-CCcccccc-eeeEEcCCCHHHHHHHH
Q 005137 42 HVKPLILIEDVDVFFPEDRG-----FIAGIQQIAEK---AKGPVILTSNSNNI-TLPDSLDR-LEVSFTMPMPKDLLSHL 111 (712)
Q Consensus 42 ~kkkLILIDEVD~LfeeDrG-----f~~AL~~Liek---TKrPIILTCND~n~-~Lpkllsr-l~IrFkrPs~~eI~srL 111 (712)
.++-+||||-+|-+...++. +...|..++.. .+++||+||..... .+.+.+.. ..+.....+..++..++
T Consensus 80 ~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (166)
T PF05729_consen 80 NKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYL 159 (166)
T ss_pred CCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHH
Confidence 35678999999999885432 44456666665 46789999987542 23333333 46788888999999988
Q ss_pred HHHH
Q 005137 112 QMIC 115 (712)
Q Consensus 112 ~~Ic 115 (712)
....
T Consensus 160 ~~~f 163 (166)
T PF05729_consen 160 RKYF 163 (166)
T ss_pred HHHh
Confidence 7654
No 188
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=72.75 E-value=11 Score=41.26 Aligned_cols=73 Identities=21% Similarity=0.357 Sum_probs=52.2
Q ss_pred CCCcEEEEeCCCCC----Ch----hhHHHHHHHHHHHHh-------cCCcEEEEecCCCCCCcccccc----eeeEEcCC
Q 005137 42 HVKPLILIEDVDVF----FP----EDRGFIAGIQQIAEK-------AKGPVILTSNSNNITLPDSLDR----LEVSFTMP 102 (712)
Q Consensus 42 ~kkkLILIDEVD~L----fe----eDrGf~~AL~~Liek-------TKrPIILTCND~n~~Lpkllsr----l~IrFkrP 102 (712)
+.+.+|+|||.|.+ |+ +||.-++.+.+++++ ..+-||-.+|...-.=|.++.. ..|.|..|
T Consensus 263 kaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~P 342 (424)
T KOG0652|consen 263 KAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHP 342 (424)
T ss_pred cCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCC
Confidence 45789999999999 32 488888888888886 3456888888766433444432 57999988
Q ss_pred CHHHHHHHHHHHH
Q 005137 103 MPKDLLSHLQMIC 115 (712)
Q Consensus 103 s~~eI~srL~~Ic 115 (712)
+. +-++|+..|-
T Consensus 343 ne-~aRarIlQIH 354 (424)
T KOG0652|consen 343 NE-EARARILQIH 354 (424)
T ss_pred Ch-HHHHHHHHHh
Confidence 74 5667777764
No 189
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=72.09 E-value=5.4 Score=45.38 Aligned_cols=141 Identities=16% Similarity=0.127 Sum_probs=84.2
Q ss_pred cChhhHHHhhCCCcEEEEeCCCc----cccc-ccc-----cccCCCCCCcEEEEeCCCCCChh---------hHHHHHHH
Q 005137 6 TVSLCEAAQHADDEVVEVIHIPD----DENS-HGV-----MGKSDNHVKPLILIEDVDVFFPE---------DRGFIAGI 66 (712)
Q Consensus 6 a~~~~aIAkelGydVIELNASDd----R~rn-~~v-----~gsl~~~kkkLILIDEVD~Lfee---------DrGf~~AL 66 (712)
++.+-|+|.|+|-.++-+.+|.- |+.+ ..+ +.. ...++.|+|||+|.+... -|-+-..|
T Consensus 259 TlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemAR--fyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsEL 336 (491)
T KOG0738|consen 259 TLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMAR--FYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSEL 336 (491)
T ss_pred HHHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHH--HhCCceeehhhHHHHHhcCCCccchhHHHHHHHHH
Confidence 46788999999988888888772 2211 111 111 235789999999999431 23344444
Q ss_pred HHHHH-------hcCCcEEEEecCCCCCCcc-cccc--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---
Q 005137 67 QQIAE-------KAKGPVILTSNSNNITLPD-SLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIES--- 133 (712)
Q Consensus 67 ~~Lie-------kTKrPIILTCND~n~~Lpk-llsr--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~--- 133 (712)
.-.+. ..|+=+||.+++..=-|-. ++.| ..|...-|+ .+-++-|..|+..+-..-++-.++.|++.
T Consensus 337 LvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~-~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eG 415 (491)
T KOG0738|consen 337 LVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPD-AEARSALIKILLRSVELDDPVNLEDLAERSEG 415 (491)
T ss_pred HHHhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCC-HHHHHHHHHHhhccccCCCCccHHHHHHHhcC
Confidence 33332 2466677777663212333 2333 345555555 55677788888877655555555555553
Q ss_pred -cCCcHHHHHHHHHHHh
Q 005137 134 -CRADIRKTIMHLQFWC 149 (712)
Q Consensus 134 -S~GDIRqaLN~LQf~s 149 (712)
++.|||-+--...+..
T Consensus 416 ySGaDI~nvCreAsm~~ 432 (491)
T KOG0738|consen 416 YSGADITNVCREASMMA 432 (491)
T ss_pred CChHHHHHHHHHHHHHH
Confidence 6779987655544433
No 190
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=71.98 E-value=20 Score=41.88 Aligned_cols=104 Identities=11% Similarity=0.070 Sum_probs=68.3
Q ss_pred CcEEEEeCCCCCChhhHHHHHHHHHHHHhc-------------CCcEEEEecCCCC-------CCcccccc-eeeEEcCC
Q 005137 44 KPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSNNI-------TLPDSLDR-LEVSFTMP 102 (712)
Q Consensus 44 kkLILIDEVD~LfeeDrGf~~AL~~LiekT-------------KrPIILTCND~n~-------~Lpkllsr-l~IrFkrP 102 (712)
+..|+|||||-|... .+..|.++++.. .++||+++|..-. ....++.+ ..+.+.-|
T Consensus 308 gGTLfLdeI~~Lp~~---~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lP 384 (526)
T TIGR02329 308 RGTLFLDEIGEMPLP---LQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALP 384 (526)
T ss_pred CceEEecChHhCCHH---HHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCC
Confidence 568999999999876 445666666542 2368888876421 11122333 23455555
Q ss_pred CH----HH----HHHHHHHHHHHcCCCCCHHHHHH-------HHHHc-CCcHHHHHHHHHHHhh
Q 005137 103 MP----KD----LLSHLQMICAAEKVELQQHLLVQ-------LIESC-RADIRKTIMHLQFWCQ 150 (712)
Q Consensus 103 s~----~e----I~srL~~Ic~~EGikId~~~L~~-------LI~~S-~GDIRqaLN~LQf~s~ 150 (712)
+. ++ +..+|...+...++.++++++.. |..+. -|++|+.-|.++-.+.
T Consensus 385 PLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i 448 (526)
T TIGR02329 385 PLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLAL 448 (526)
T ss_pred CchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 53 22 44556666666688899999887 76664 8999999999987665
No 191
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=71.96 E-value=31 Score=38.43 Aligned_cols=106 Identities=10% Similarity=0.086 Sum_probs=68.1
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhc-------------CCcEEEEecCCC-------CCCcccccc-eeeEEcC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSNN-------ITLPDSLDR-LEVSFTM 101 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekT-------------KrPIILTCND~n-------~~Lpkllsr-l~IrFkr 101 (712)
.+..++|||||.|... .+..|.++++.. .++||++++..- ...+.++.+ ..+.+.-
T Consensus 232 ~~Gtl~l~~i~~l~~~---~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~ 308 (469)
T PRK10923 232 DGGTLFLDEIGDMPLD---VQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHL 308 (469)
T ss_pred CCCEEEEeccccCCHH---HHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcceeecC
Confidence 3567899999999876 345666666643 237899887531 111233344 2344444
Q ss_pred CCH--------HHHHHHHHHHHHHcCC---CCCHHHHHHHHHHc-CCcHHHHHHHHHHHhhc
Q 005137 102 PMP--------KDLLSHLQMICAAEKV---ELQQHLLVQLIESC-RADIRKTIMHLQFWCQN 151 (712)
Q Consensus 102 Ps~--------~eI~srL~~Ic~~EGi---kId~~~L~~LI~~S-~GDIRqaLN~LQf~s~s 151 (712)
|+. .-+..+|...+..-|. .++++++..|..+. -|++|+.-|.++-....
T Consensus 309 PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~ 370 (469)
T PRK10923 309 PPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVM 370 (469)
T ss_pred CCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 442 2234455555555443 47999999999885 89999999999866543
No 192
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=69.36 E-value=6.5 Score=45.02 Aligned_cols=92 Identities=14% Similarity=0.309 Sum_probs=66.0
Q ss_pred CCcEEEEeCCCCCChh---------hHHHHHHHHHHHHhcC----------CcEEEEecCC------CCCCcccccc--e
Q 005137 43 VKPLILIEDVDVFFPE---------DRGFIAGIQQIAEKAK----------GPVILTSNSN------NITLPDSLDR--L 95 (712)
Q Consensus 43 kkkLILIDEVD~Lfee---------DrGf~~AL~~LiekTK----------rPIILTCND~------n~~Lpkllsr--l 95 (712)
...+|+|||+|-+... -.|-+++|.++++-+. .-|.|||--- .-.+|.+..| .
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi 328 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPI 328 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence 4689999999999643 1567789999988532 2377888432 1135666677 4
Q ss_pred eeEEcCCCHHHHHHHHH-----------HHHHHcCCC--CCHHHHHHHHHHc
Q 005137 96 EVSFTMPMPKDLLSHLQ-----------MICAAEKVE--LQQHLLVQLIESC 134 (712)
Q Consensus 96 ~IrFkrPs~~eI~srL~-----------~Ic~~EGik--Id~~~L~~LI~~S 134 (712)
.+.+..++.+++...|. .....||+. +++++|.+|++.+
T Consensus 329 ~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A 380 (443)
T PRK05201 329 RVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIA 380 (443)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHH
Confidence 56788898877777762 446788985 5799999998875
No 193
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=68.79 E-value=48 Score=36.76 Aligned_cols=136 Identities=12% Similarity=0.090 Sum_probs=86.6
Q ss_pred hhhHHHhhCCCcEEEEeCCCcccccccccccCCC-CCCcEEEEeCCCCCChhhHHHHHHHHHHHHhcC------------
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDENSHGVMGKSDN-HVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAK------------ 74 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~rn~~v~gsl~~-~kkkLILIDEVD~LfeeDrGf~~AL~~LiekTK------------ 74 (712)
.+-++|+|+|.++-=..+ ...+|-.-..+.+++ ..+.++++||++.+...- -.-|...|+.-+
T Consensus 68 LA~IIA~Emgvn~k~tsG-p~leK~gDlaaiLt~Le~~DVLFIDEIHrl~~~v---EE~LYpaMEDf~lDI~IG~gp~Ar 143 (332)
T COG2255 68 LAHIIANELGVNLKITSG-PALEKPGDLAAILTNLEEGDVLFIDEIHRLSPAV---EEVLYPAMEDFRLDIIIGKGPAAR 143 (332)
T ss_pred HHHHHHHHhcCCeEeccc-ccccChhhHHHHHhcCCcCCeEEEehhhhcChhH---HHHhhhhhhheeEEEEEccCCccc
Confidence 466789998876432211 111110001111222 356899999999997641 123334444321
Q ss_pred ------CcEEEEe--cCCCCCCcccccc--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHH
Q 005137 75 ------GPVILTS--NSNNITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMH 144 (712)
Q Consensus 75 ------rPIILTC--ND~n~~Lpkllsr--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~ 144 (712)
-||=|+- +-....--++++| ...++.--+.+++...+..-+..-++.++++....|+..++|=-|=+...
T Consensus 144 sv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRL 223 (332)
T COG2255 144 SIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRL 223 (332)
T ss_pred eEeccCCCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHHH
Confidence 1343332 2222222335577 55677777889999999999999999999999999999999999999888
Q ss_pred HHH
Q 005137 145 LQF 147 (712)
Q Consensus 145 LQf 147 (712)
|.-
T Consensus 224 LrR 226 (332)
T COG2255 224 LRR 226 (332)
T ss_pred HHH
Confidence 864
No 194
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=67.30 E-value=10 Score=40.49 Aligned_cols=39 Identities=15% Similarity=0.388 Sum_probs=30.0
Q ss_pred cEEEEeCCCCCChhhHHHHHHHHHHHHhcCCcEEEEecC
Q 005137 45 PLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNS 83 (712)
Q Consensus 45 kLILIDEVD~LfeeDrGf~~AL~~LiekTKrPIILTCND 83 (712)
++|||||+|.+.+...+++..+.+.+....+|+|+.+-.
T Consensus 126 ~~iViDE~h~~~~~~~~~l~~~l~~l~~~~~~~i~~SAT 164 (358)
T TIGR01587 126 SLLIFDEVHFYDEYTLALILAVLEVLKDNDVPILLMSAT 164 (358)
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEecC
Confidence 789999999998776667767666666667787776644
No 195
>CHL00095 clpC Clp protease ATP binding subunit
Probab=66.93 E-value=9.6 Score=46.37 Aligned_cols=133 Identities=11% Similarity=0.028 Sum_probs=82.6
Q ss_pred CCcEEEEeCCCcc------c----c-cccccccCCCCCCcEEEEeCCCCCChh-h-HH---HHHHHHHHHHhcCCcEEEE
Q 005137 17 DDEVVEVIHIPDD------E----N-SHGVMGKSDNHVKPLILIEDVDVFFPE-D-RG---FIAGIQQIAEKAKGPVILT 80 (712)
Q Consensus 17 GydVIELNASDdR------~----r-n~~v~gsl~~~kkkLILIDEVD~Lfee-D-rG---f~~AL~~LiekTKrPIILT 80 (712)
|..|+++|+++-. + + ...+. ...+.++.||+|||+|.++.. . .| ...-|...+...+..+|.+
T Consensus 235 ~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~-~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~Iga 313 (821)
T CHL00095 235 DKLVITLDIGLLLAGTKYRGEFEERLKRIFD-EIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGA 313 (821)
T ss_pred CCeEEEeeHHHHhccCCCccHHHHHHHHHHH-HHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEe
Confidence 6889999986521 1 0 01110 011224578999999988653 1 12 2233445555666778888
Q ss_pred ecCCC--CC--C-cccccc-eeeEEcCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCc------HHHHHHH
Q 005137 81 SNSNN--IT--L-PDSLDR-LEVSFTMPMPKDLLSHLQMICA----AEKVELQQHLLVQLIESCRAD------IRKTIMH 144 (712)
Q Consensus 81 CND~n--~~--L-pkllsr-l~IrFkrPs~~eI~srL~~Ic~----~EGikId~~~L~~LI~~S~GD------IRqaLN~ 144 (712)
+|... .. . +.+..+ ..|.+..|+.++....|+.+.. ..++.++++++..++..+.+= -+++|..
T Consensus 314 Tt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidl 393 (821)
T CHL00095 314 TTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDL 393 (821)
T ss_pred CCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHH
Confidence 87642 10 1 222334 5688899999888888776642 346789999999998877642 3468887
Q ss_pred HHHHhh
Q 005137 145 LQFWCQ 150 (712)
Q Consensus 145 LQf~s~ 150 (712)
|...+.
T Consensus 394 ld~a~a 399 (821)
T CHL00095 394 LDEAGS 399 (821)
T ss_pred HHHHHH
Confidence 776554
No 196
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=66.02 E-value=9.9 Score=43.41 Aligned_cols=141 Identities=11% Similarity=0.087 Sum_probs=84.2
Q ss_pred ChhhHHHhhCCCcEEEEeCCCcccc----c-ccccccC---CCCCCcEEEEeCCCCCChh-----hHHH----HHHHHHH
Q 005137 7 VSLCEAAQHADDEVVEVIHIPDDEN----S-HGVMGKS---DNHVKPLILIEDVDVFFPE-----DRGF----IAGIQQI 69 (712)
Q Consensus 7 ~~~~aIAkelGydVIELNASDdR~r----n-~~v~gsl---~~~kkkLILIDEVD~Lfee-----DrGf----~~AL~~L 69 (712)
....+||-|.+..++-+.||.--++ + ..+...+ ...++.+|+|||||.++.. ...- ...+.++
T Consensus 201 mL~~aiAsE~~atff~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~ 280 (428)
T KOG0740|consen 201 MLAKAIATESGATFFNISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQF 280 (428)
T ss_pred HHHHHHHhhhcceEeeccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhh
Confidence 4567899999999999999883321 0 1110100 1246899999999999754 1111 1122222
Q ss_pred HHhc---CCcEEEEe-cCCCCCCcc-cccc--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----cCCcH
Q 005137 70 AEKA---KGPVILTS-NSNNITLPD-SLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIES----CRADI 138 (712)
Q Consensus 70 iekT---KrPIILTC-ND~n~~Lpk-llsr--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~----S~GDI 138 (712)
.-.+ .=.|++++ ++..--+-. .+.| ..+.+.+|..+.-...+..+....+..+....++.|++. +++||
T Consensus 281 ~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi 360 (428)
T KOG0740|consen 281 DGKNSAPDDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDI 360 (428)
T ss_pred ccccCCCCCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccH
Confidence 2211 11233333 332111111 1223 456689999888888888888777888888888888875 67888
Q ss_pred HHHHHHHHH
Q 005137 139 RKTIMHLQF 147 (712)
Q Consensus 139 RqaLN~LQf 147 (712)
....-.-++
T Consensus 361 ~~l~kea~~ 369 (428)
T KOG0740|consen 361 TALCKEAAM 369 (428)
T ss_pred HHHHHHhhc
Confidence 887765544
No 197
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=65.95 E-value=3.4 Score=40.83 Aligned_cols=66 Identities=15% Similarity=0.161 Sum_probs=41.5
Q ss_pred hhhHHHhhCCC----cEEEEeCCCcccc---cccc-------cccCCCCCCcEEEEeCCCCCChh--------hHHHHHH
Q 005137 8 SLCEAAQHADD----EVVEVIHIPDDEN---SHGV-------MGKSDNHVKPLILIEDVDVFFPE--------DRGFIAG 65 (712)
Q Consensus 8 ~~~aIAkelGy----dVIELNASDdR~r---n~~v-------~gsl~~~kkkLILIDEVD~Lfee--------DrGf~~A 65 (712)
.+.++|+.++. .++-+|++.-... .+.+ .+........+|+|||+|..... -.+.+.+
T Consensus 19 la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~~~~~~~~v~~~~V~~~ 98 (171)
T PF07724_consen 19 LAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHPSNSGGADVSGEGVQNS 98 (171)
T ss_dssp HHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSHTTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhccccccccchhhHHHHHHH
Confidence 46678888886 8999999883320 0111 11111112359999999999550 1267889
Q ss_pred HHHHHHhc
Q 005137 66 IQQIAEKA 73 (712)
Q Consensus 66 L~~LiekT 73 (712)
|.++++..
T Consensus 99 LL~~le~g 106 (171)
T PF07724_consen 99 LLQLLEGG 106 (171)
T ss_dssp HHHHHHHS
T ss_pred HHHHhccc
Confidence 99999863
No 198
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=65.38 E-value=14 Score=37.66 Aligned_cols=71 Identities=13% Similarity=0.201 Sum_probs=45.5
Q ss_pred CcEEEEeCCCCCChhhHHHHHHHHHHHHhcCCcEEEEecCC--CCCCcccccc-eeeE-EcCCCHHHHHHHHHHHH
Q 005137 44 KPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSN--NITLPDSLDR-LEVS-FTMPMPKDLLSHLQMIC 115 (712)
Q Consensus 44 kkLILIDEVD~LfeeDrGf~~AL~~LiekTKrPIILTCND~--n~~Lpkllsr-l~Ir-FkrPs~~eI~srL~~Ic 115 (712)
-.|||+||+--|=---+.|..++.++++..| |+|.|-.-. ++.+.+.... ...- ..+-+.+.|..++..++
T Consensus 101 aDvIIIDEIGpMElks~~f~~~ve~vl~~~k-pliatlHrrsr~P~v~~ik~~~~v~v~lt~~NR~~i~~~Il~~L 175 (179)
T COG1618 101 ADVIIIDEIGPMELKSKKFREAVEEVLKSGK-PLIATLHRRSRHPLVQRIKKLGGVYVFLTPENRNRILNEILSVL 175 (179)
T ss_pred CCEEEEecccchhhccHHHHHHHHHHhcCCC-cEEEEEecccCChHHHHhhhcCCEEEEEccchhhHHHHHHHHHh
Confidence 4899999999994446889999999997766 899888543 4444444444 2333 33333344544444433
No 199
>PF14516 AAA_35: AAA-like domain
Probab=64.80 E-value=39 Score=36.74 Aligned_cols=92 Identities=17% Similarity=0.247 Sum_probs=58.8
Q ss_pred CCCcEEEEeCCCCCChh---hHHHHHHHHHHHHhcC-------CcEEEEec-CCCCC---Ccccccc-eeeEEcCCCHHH
Q 005137 42 HVKPLILIEDVDVFFPE---DRGFIAGIQQIAEKAK-------GPVILTSN-SNNIT---LPDSLDR-LEVSFTMPMPKD 106 (712)
Q Consensus 42 ~kkkLILIDEVD~Lfee---DrGf~~AL~~LiekTK-------rPIILTCN-D~n~~---Lpkllsr-l~IrFkrPs~~e 106 (712)
.++-||+|||||.+++. ...|++.|+......+ ..+|++-. +.... -..+|.- ..|+...-+.++
T Consensus 126 ~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~e 205 (331)
T PF14516_consen 126 DKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEE 205 (331)
T ss_pred CCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHH
Confidence 35678999999999873 3578888888877543 11333322 21111 0112322 456666777788
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcCCc
Q 005137 107 LLSHLQMICAAEKVELQQHLLVQLIESCRAD 137 (712)
Q Consensus 107 I~srL~~Ic~~EGikId~~~L~~LI~~S~GD 137 (712)
+..-++ .-+...++..++.|...++|=
T Consensus 206 v~~L~~----~~~~~~~~~~~~~l~~~tgGh 232 (331)
T PF14516_consen 206 VQELAQ----RYGLEFSQEQLEQLMDWTGGH 232 (331)
T ss_pred HHHHHH----hhhccCCHHHHHHHHHHHCCC
Confidence 766443 447778888899999988885
No 200
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=63.96 E-value=20 Score=43.86 Aligned_cols=148 Identities=18% Similarity=0.147 Sum_probs=88.1
Q ss_pred cChhhHHHhhCCCcEEEEeCCCcccc--c--ccccccCC----CCCCcEEEEeCCCCCChhhHH---------HHHHHHH
Q 005137 6 TVSLCEAAQHADDEVVEVIHIPDDEN--S--HGVMGKSD----NHVKPLILIEDVDVFFPEDRG---------FIAGIQQ 68 (712)
Q Consensus 6 a~~~~aIAkelGydVIELNASDdR~r--n--~~v~gsl~----~~kkkLILIDEVD~LfeeDrG---------f~~AL~~ 68 (712)
+|.+-|+|.|.|..++-+++|+=.+. . .+-...++ ...+.+|.+||+|.+...-.| --..|.+
T Consensus 358 TLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQ 437 (774)
T KOG0731|consen 358 TLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQ 437 (774)
T ss_pred HHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHH
Confidence 57889999999999999999993321 0 00001111 235789999999998543111 1134455
Q ss_pred HHHh------c-CCcEEEEecCCCCCCccccc--c--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----
Q 005137 69 IAEK------A-KGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIES---- 133 (712)
Q Consensus 69 Liek------T-KrPIILTCND~n~~Lpklls--r--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~---- 133 (712)
++-. + .+=+|..||...-.=+.++. | -.|....|+...=.+.+..-+..-++..++..+.+|+..
T Consensus 438 ll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf 517 (774)
T KOG0731|consen 438 LLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGF 517 (774)
T ss_pred HHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCC
Confidence 4432 2 23344445554321122221 2 457778888766555555444444454567777776654
Q ss_pred cCCcHHHHHHHHHHHhhcCC
Q 005137 134 CRADIRKTIMHLQFWCQNKG 153 (712)
Q Consensus 134 S~GDIRqaLN~LQf~s~s~~ 153 (712)
++.||.-..|.....+...+
T Consensus 518 ~gadl~n~~neaa~~a~r~~ 537 (774)
T KOG0731|consen 518 SGADLANLCNEAALLAARKG 537 (774)
T ss_pred cHHHHHhhhhHHHHHHHHhc
Confidence 56789999998887766543
No 201
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=63.85 E-value=7.7 Score=42.46 Aligned_cols=143 Identities=18% Similarity=0.240 Sum_probs=87.3
Q ss_pred cChhhHHHhhCCCcEEEEeCCCccc-------c---cccccccCCCCCCcEEEEeCCCCCC----h----hhHHHHHHHH
Q 005137 6 TVSLCEAAQHADDEVVEVIHIPDDE-------N---SHGVMGKSDNHVKPLILIEDVDVFF----P----EDRGFIAGIQ 67 (712)
Q Consensus 6 a~~~~aIAkelGydVIELNASDdR~-------r---n~~v~gsl~~~kkkLILIDEVD~Lf----e----eDrGf~~AL~ 67 (712)
+|.+.++|+.-+.-+|.+-.|.--. | --+.+. ..++--+|+|||+|.+. + +|..-++.+.
T Consensus 225 tl~aravanrtdacfirvigselvqkyvgegarmvrelf~ma--rtkkaciiffdeidaiggarfddg~ggdnevqrtml 302 (435)
T KOG0729|consen 225 TLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMA--RTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTML 302 (435)
T ss_pred hHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHh--cccceEEEEeeccccccCccccCCCCCcHHHHHHHH
Confidence 5678899999999999988887211 0 011111 12234568899999993 2 2445667788
Q ss_pred HHHHh-------cCCcEEEEecCCCCCCccccc--c--eeeEEcCCCHHHHHHHHHHH-HHHcCC--CCCHHHHHHHHHH
Q 005137 68 QIAEK-------AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMI-CAAEKV--ELQQHLLVQLIES 133 (712)
Q Consensus 68 ~Liek-------TKrPIILTCND~n~~Lpklls--r--l~IrFkrPs~~eI~srL~~I-c~~EGi--kId~~~L~~LI~~ 133 (712)
+++.+ .++-+.+.+|.++..=|.++. | -.+.|.-|..+- +.++..| ++...+ .|--+.|..|+-.
T Consensus 303 eli~qldgfdprgnikvlmatnrpdtldpallrpgrldrkvef~lpdleg-rt~i~kihaksmsverdir~ellarlcpn 381 (435)
T KOG0729|consen 303 ELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEG-RTHIFKIHAKSMSVERDIRFELLARLCPN 381 (435)
T ss_pred HHHHhccCCCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccc-cceeEEEeccccccccchhHHHHHhhCCC
Confidence 88876 356688888887643333332 2 568888877532 3333333 222222 2334566666654
Q ss_pred -cCCcHHHHHHHHHHHhhc
Q 005137 134 -CRADIRKTIMHLQFWCQN 151 (712)
Q Consensus 134 -S~GDIRqaLN~LQf~s~s 151 (712)
++.+||+.-...-+++..
T Consensus 382 stgaeirsvcteagmfair 400 (435)
T KOG0729|consen 382 STGAEIRSVCTEAGMFAIR 400 (435)
T ss_pred CcchHHHHHHHHhhHHHHH
Confidence 577999988777666543
No 202
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=63.41 E-value=9.4 Score=43.73 Aligned_cols=92 Identities=15% Similarity=0.295 Sum_probs=66.3
Q ss_pred CCcEEEEeCCCCCChh---------hHHHHHHHHHHHHhcC----------CcEEEEecCC------CCCCcccccc--e
Q 005137 43 VKPLILIEDVDVFFPE---------DRGFIAGIQQIAEKAK----------GPVILTSNSN------NITLPDSLDR--L 95 (712)
Q Consensus 43 kkkLILIDEVD~Lfee---------DrGf~~AL~~LiekTK----------rPIILTCND~------n~~Lpkllsr--l 95 (712)
...+|+|||+|-+... -.|-+++|.++++-+. .-|.|||--- .-.+|.+..| .
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi 326 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPI 326 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence 5689999999999642 2456789999988532 2377887432 1236666677 5
Q ss_pred eeEEcCCCHHHHHHHH-----------HHHHHHcCCC--CCHHHHHHHHHHc
Q 005137 96 EVSFTMPMPKDLLSHL-----------QMICAAEKVE--LQQHLLVQLIESC 134 (712)
Q Consensus 96 ~IrFkrPs~~eI~srL-----------~~Ic~~EGik--Id~~~L~~LI~~S 134 (712)
.+.+..++.+++...| +.....||+. ++++++..|++.+
T Consensus 327 ~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A 378 (441)
T TIGR00390 327 RVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELA 378 (441)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHH
Confidence 6778999988888777 2445788975 5899999998875
No 203
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=62.52 E-value=6.6 Score=42.93 Aligned_cols=111 Identities=11% Similarity=0.213 Sum_probs=62.5
Q ss_pred CCcEEEEeCCCCCChh----hHHHHHHHHHHHHhcCCcEEEEecCCC-CCC---cccccc-eeeEEcCC-CHHHHHHHHH
Q 005137 43 VKPLILIEDVDVFFPE----DRGFIAGIQQIAEKAKGPVILTSNSNN-ITL---PDSLDR-LEVSFTMP-MPKDLLSHLQ 112 (712)
Q Consensus 43 kkkLILIDEVD~Lfee----DrGf~~AL~~LiekTKrPIILTCND~n-~~L---pkllsr-l~IrFkrP-s~~eI~srL~ 112 (712)
+-++|||||+..+..+ .+-|..+|+.+.+..++|||++=...- ..+ +.+-+| ..+..++= ..++..+.|.
T Consensus 145 ~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~ 224 (302)
T PF05621_consen 145 GVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLA 224 (302)
T ss_pred CCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHH
Confidence 4689999999998554 677999999999999999999865421 001 111122 11222211 1234444444
Q ss_pred HHHH----HcCCCC-CHHHHHHHHHHcCC---cHHHHHHHHHHHhhcCC
Q 005137 113 MICA----AEKVEL-QQHLLVQLIESCRA---DIRKTIMHLQFWCQNKG 153 (712)
Q Consensus 113 ~Ic~----~EGikI-d~~~L~~LI~~S~G---DIRqaLN~LQf~s~s~~ 153 (712)
..-. ++.-.+ +++....|...++| ++.+.|+..-..+-..|
T Consensus 225 s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll~~aA~~AI~sG 273 (302)
T PF05621_consen 225 SFERALPLRKPSNLASPELARRIHERSEGLIGELSRLLNAAAIAAIRSG 273 (302)
T ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhcC
Confidence 3332 222223 34555677776665 55555555544444443
No 204
>PF13173 AAA_14: AAA domain
Probab=61.81 E-value=17 Score=33.51 Aligned_cols=92 Identities=11% Similarity=0.189 Sum_probs=58.2
Q ss_pred HHHhhCC--CcEEEEeCCCccccc-------ccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhc-CCcEEEE
Q 005137 11 EAAQHAD--DEVVEVIHIPDDENS-------HGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-KGPVILT 80 (712)
Q Consensus 11 aIAkelG--ydVIELNASDdR~rn-------~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekT-KrPIILT 80 (712)
.+|+++. .+++.+|..|.+.+. ..+... ...++++|+||||..+. +++..+..++... +..||+|
T Consensus 21 ~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~iDEiq~~~----~~~~~lk~l~d~~~~~~ii~t 95 (128)
T PF13173_consen 21 QLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLEL-IKPGKKYIFIDEIQYLP----DWEDALKFLVDNGPNIKIILT 95 (128)
T ss_pred HHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHh-hccCCcEEEEehhhhhc----cHHHHHHHHHHhccCceEEEE
Confidence 3455554 789999998855421 111111 11257899999999984 4778888888876 6789999
Q ss_pred ecCCCCC---Ccc-cccc-eeeEEcCCCHHHH
Q 005137 81 SNSNNIT---LPD-SLDR-LEVSFTMPMPKDL 107 (712)
Q Consensus 81 CND~n~~---Lpk-llsr-l~IrFkrPs~~eI 107 (712)
....... ... +..| ..+++.+.+-.|+
T Consensus 96 gS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 96 GSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 8775321 122 2234 5677777766553
No 205
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=61.78 E-value=3.9 Score=40.57 Aligned_cols=71 Identities=17% Similarity=0.145 Sum_probs=35.7
Q ss_pred HhhCCCcEEEEeCCC--cccccccccccCC-----CCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecC
Q 005137 13 AQHADDEVVEVIHIP--DDENSHGVMGKSD-----NHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNS 83 (712)
Q Consensus 13 AkelGydVIELNASD--dR~rn~~v~gsl~-----~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND 83 (712)
|-..|+.|+-+++++ ++-+.....+... -.+-.|+||||+-.... +......+-+++.. .++|+|+|+|-
T Consensus 71 ~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~~~~-~~~~~~~l~~ii~~R~~~~~tIiTSN~ 149 (178)
T PF01695_consen 71 AIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGYEPL-SEWEAELLFEIIDERYERKPTIITSNL 149 (178)
T ss_dssp HHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTSS----HHHHHCTHHHHHHHHHT-EEEEEESS
T ss_pred hccCCcceeEeecCceeccccccccccchhhhcCccccccEecccccceeee-cccccccchhhhhHhhcccCeEeeCCC
Confidence 334799999999987 2111111111100 02458999999965533 22233334444432 35699999997
Q ss_pred C
Q 005137 84 N 84 (712)
Q Consensus 84 ~ 84 (712)
.
T Consensus 150 ~ 150 (178)
T PF01695_consen 150 S 150 (178)
T ss_dssp -
T ss_pred c
Confidence 4
No 206
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=59.95 E-value=8.9 Score=34.79 Aligned_cols=45 Identities=16% Similarity=0.115 Sum_probs=33.7
Q ss_pred CCCcEEEEeCCCCCChhh-----------HHHHHHHHHHHHhcCCcEEEEecCCCC
Q 005137 42 HVKPLILIEDVDVFFPED-----------RGFIAGIQQIAEKAKGPVILTSNSNNI 86 (712)
Q Consensus 42 ~kkkLILIDEVD~LfeeD-----------rGf~~AL~~LiekTKrPIILTCND~n~ 86 (712)
.+..+||+||+..+.+.. +.++.++..++++.++++|+|.+..+.
T Consensus 84 ~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 84 GGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSG 139 (165)
T ss_pred CCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCc
Confidence 357899999999875331 345667777777778999999988753
No 207
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=58.79 E-value=29 Score=37.23 Aligned_cols=110 Identities=21% Similarity=0.286 Sum_probs=70.0
Q ss_pred hCCCcEEEEeCCCcccccccccccC-CCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCc----EEEEecCCCCC
Q 005137 15 HADDEVVEVIHIPDDENSHGVMGKS-DNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGP----VILTSNSNNIT 87 (712)
Q Consensus 15 elGydVIELNASDdR~rn~~v~gsl-~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrP----IILTCND~n~~ 87 (712)
..|..+||+...+=..=.. +...+ ....+.||++|| .-|+++...-.+|..+++-+ .+| |.-|+|-++.
T Consensus 78 ~~GLRlIev~k~~L~~l~~-l~~~l~~~~~kFIlf~DD--LsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHL- 153 (249)
T PF05673_consen 78 DQGLRLIEVSKEDLGDLPE-LLDLLRDRPYKFILFCDD--LSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHL- 153 (249)
T ss_pred hcCceEEEECHHHhccHHH-HHHHHhcCCCCEEEEecC--CCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhc-
Confidence 4578899998866111000 00111 123468999996 45776444447888888753 233 5555565432
Q ss_pred Ccc------------------------cccc--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Q 005137 88 LPD------------------------SLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLV 128 (712)
Q Consensus 88 Lpk------------------------llsr--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~ 128 (712)
++. +-+| +.|.|.+|+.++-...+...+.+.|+.++++.+.
T Consensus 154 v~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~ 220 (249)
T PF05673_consen 154 VPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELR 220 (249)
T ss_pred cchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 111 1123 5899999999999999999999999999975554
No 208
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=57.68 E-value=24 Score=41.91 Aligned_cols=143 Identities=17% Similarity=0.140 Sum_probs=86.0
Q ss_pred cChhhHHHhhCCCcEEEEeCCCccc----------ccccccccCCCCCCcEEEEeCCCCCChh----hH-HHHHHHHHHH
Q 005137 6 TVSLCEAAQHADDEVVEVIHIPDDE----------NSHGVMGKSDNHVKPLILIEDVDVFFPE----DR-GFIAGIQQIA 70 (712)
Q Consensus 6 a~~~~aIAkelGydVIELNASDdR~----------rn~~v~gsl~~~kkkLILIDEVD~Lfee----Dr-Gf~~AL~~Li 70 (712)
++.+.|+|-|.|..++-...|.-.+ |.-+... .+..+-+|+|||+|.+... |. -....|.+++
T Consensus 351 TlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aA--k~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLL 428 (752)
T KOG0734|consen 351 TLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAA--KARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLL 428 (752)
T ss_pred hHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHHHH--HhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHH
Confidence 5789999999999999888887322 1111111 1235678999999999542 43 3445777766
Q ss_pred Hh-----cCCcEEEEe--cCCCCCCccccc---c--eeeEEcCCCH----HHHHHHHHHHHHHcCCCCCHHHHHHHH-HH
Q 005137 71 EK-----AKGPVILTS--NSNNITLPDSLD---R--LEVSFTMPMP----KDLLSHLQMICAAEKVELQQHLLVQLI-ES 133 (712)
Q Consensus 71 ek-----TKrPIILTC--ND~n~~Lpklls---r--l~IrFkrPs~----~eI~srL~~Ic~~EGikId~~~L~~LI-~~ 133 (712)
-. -+-+||+|. |-+.. +.+-+- | ..|....|+. +-+..||..|-+.|++. +.+|..=- -.
T Consensus 429 vEmDGF~qNeGiIvigATNfpe~-LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD--~~iiARGT~GF 505 (752)
T KOG0734|consen 429 VEMDGFKQNEGIIVIGATNFPEA-LDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVD--PKIIARGTPGF 505 (752)
T ss_pred HHhcCcCcCCceEEEeccCChhh-hhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCC--HhHhccCCCCC
Confidence 54 234677665 33321 222221 1 3455666663 55777888888777665 33333211 12
Q ss_pred cCCcHHHHHHHHHHHhhcCC
Q 005137 134 CRADIRKTIMHLQFWCQNKG 153 (712)
Q Consensus 134 S~GDIRqaLN~LQf~s~s~~ 153 (712)
++.|+--.+|+--..+...+
T Consensus 506 sGAdLaNlVNqAAlkAa~dg 525 (752)
T KOG0734|consen 506 SGADLANLVNQAALKAAVDG 525 (752)
T ss_pred chHHHHHHHHHHHHHHHhcC
Confidence 56788888888777665544
No 209
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=57.10 E-value=19 Score=40.01 Aligned_cols=141 Identities=15% Similarity=0.196 Sum_probs=79.6
Q ss_pred cChhhHHHhhCCCcEEEEeCCCcccc---------cccccccCCCCCCcEEEEeCCCCCC--------hhhHHHHHHHHH
Q 005137 6 TVSLCEAAQHADDEVVEVIHIPDDEN---------SHGVMGKSDNHVKPLILIEDVDVFF--------PEDRGFIAGIQQ 68 (712)
Q Consensus 6 a~~~~aIAkelGydVIELNASDdR~r---------n~~v~gsl~~~kkkLILIDEVD~Lf--------eeDrGf~~AL~~ 68 (712)
+|.+-|+||.-...++.+-.|+=+-+ ...+... .-+.++++++||+|.+. .+.|--++.+.+
T Consensus 233 TLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA-~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLE 311 (440)
T KOG0726|consen 233 TLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVA-EEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLE 311 (440)
T ss_pred hHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHH-HhcCCceEEeehhhhhccccccCCCccHHHHHHHHHH
Confidence 45667777777777777766663211 0111000 12468999999999982 335556667777
Q ss_pred HHHhc-------CCcEEEEecCCCCCCcccccc----eeeEEcCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHH----
Q 005137 69 IAEKA-------KGPVILTSNSNNITLPDSLDR----LEVSFTMPMPKDLLSHLQMICAAEKVELQQ-HLLVQLIE---- 132 (712)
Q Consensus 69 LiekT-------KrPIILTCND~n~~Lpkllsr----l~IrFkrPs~~eI~srL~~Ic~~EGikId~-~~L~~LI~---- 132 (712)
++++. .+-||+.+|.+...=|.++.. ..|.|..|+. ..++++..|-. -++.+.. -.++.+|.
T Consensus 312 LLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe-~TkkkIf~IHT-s~Mtl~~dVnle~li~~kdd 389 (440)
T KOG0726|consen 312 LLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE-KTKKKIFQIHT-SRMTLAEDVNLEELIMTKDD 389 (440)
T ss_pred HHHhccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCch-hhhceeEEEee-cccchhccccHHHHhhcccc
Confidence 77762 356999999986433333321 5788998875 34555554421 1222221 12333433
Q ss_pred HcCCcHHHHHHHHHHHh
Q 005137 133 SCRADIRKTIMHLQFWC 149 (712)
Q Consensus 133 ~S~GDIRqaLN~LQf~s 149 (712)
.++.||..+....-..+
T Consensus 390 lSGAdIkAictEaGllA 406 (440)
T KOG0726|consen 390 LSGADIKAICTEAGLLA 406 (440)
T ss_pred cccccHHHHHHHHhHHH
Confidence 36677766655444443
No 210
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=56.58 E-value=22 Score=39.43 Aligned_cols=46 Identities=20% Similarity=0.364 Sum_probs=34.1
Q ss_pred cCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh---------cCCcEEEEecCCCC
Q 005137 38 KSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK---------AKGPVILTSNSNNI 86 (712)
Q Consensus 38 sl~~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek---------TKrPIILTCND~n~ 86 (712)
++...+.+|.||||||.|-. |.+.+|..++.. .|.-+||..|-...
T Consensus 173 ~v~~C~rslFIFDE~DKmp~---gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~ 227 (344)
T KOG2170|consen 173 TVQACQRSLFIFDEVDKLPP---GLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGS 227 (344)
T ss_pred HHHhcCCceEEechhhhcCH---hHHHHHhhhhccccccccccccceEEEEEcCCcch
Confidence 33456789999999999965 577788877763 34558888887653
No 211
>smart00350 MCM minichromosome maintenance proteins.
Probab=53.12 E-value=69 Score=37.01 Aligned_cols=91 Identities=20% Similarity=0.247 Sum_probs=53.6
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHh---------------cCCcEEEEecCCCC------------CCc-ccccc
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK---------------AKGPVILTSNSNNI------------TLP-DSLDR 94 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~Liek---------------TKrPIILTCND~n~------------~Lp-kllsr 94 (712)
.+.++++||+|.|...++ .+|.+.++. +++.||.++|-... .++ .+++|
T Consensus 300 ~~Gil~iDEi~~l~~~~q---~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsR 376 (509)
T smart00350 300 DNGVCCIDEFDKMDDSDR---TAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSR 376 (509)
T ss_pred CCCEEEEechhhCCHHHH---HHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCc
Confidence 467999999999987755 455555543 34568888886421 233 35678
Q ss_pred eee---EEcCCCHHHHHHHHHHHHHHc---------C--CCCCHHHHHHHHHHcCC
Q 005137 95 LEV---SFTMPMPKDLLSHLQMICAAE---------K--VELQQHLLVQLIESCRA 136 (712)
Q Consensus 95 l~I---rFkrPs~~eI~srL~~Ic~~E---------G--ikId~~~L~~LI~~S~G 136 (712)
+++ -...|+.+.=...+..|.... . -.++.+.|.+.+.+++.
T Consensus 377 FdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~ 432 (509)
T smart00350 377 FDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYARE 432 (509)
T ss_pred eeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHh
Confidence 533 345677654444444443211 1 24666777776666544
No 212
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=52.24 E-value=99 Score=33.32 Aligned_cols=95 Identities=22% Similarity=0.273 Sum_probs=57.5
Q ss_pred ChhhHHHhhCCCcEEEEeCCCcccc------------------cccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHH
Q 005137 7 VSLCEAAQHADDEVVEVIHIPDDEN------------------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQ 68 (712)
Q Consensus 7 ~~~~aIAkelGydVIELNASDdR~r------------------n~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~ 68 (712)
..+..+|+.+|.++++++..++-.. ..+..|.++..-..++++||++..... +..+|.+
T Consensus 58 ~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~---~q~aLl~ 134 (329)
T COG0714 58 LLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPE---VQNALLE 134 (329)
T ss_pred HHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHH---HHHHHHH
Confidence 3567889999999999999874311 112223333222259999999999765 6677777
Q ss_pred HHHh--------c----CCcEEEE-e-cCC----CCCCc-ccccc--eeeEEcCCCH
Q 005137 69 IAEK--------A----KGPVILT-S-NSN----NITLP-DSLDR--LEVSFTMPMP 104 (712)
Q Consensus 69 Liek--------T----KrPIILT-C-ND~----n~~Lp-kllsr--l~IrFkrPs~ 104 (712)
.+.. + ..|++++ + |.. ..+++ ..++| ..+.+..|..
T Consensus 135 ~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~ 191 (329)
T COG0714 135 ALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDS 191 (329)
T ss_pred HHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCc
Confidence 7775 2 1344333 3 521 12333 35577 4567788843
No 213
>PRK08181 transposase; Validated
Probab=51.38 E-value=13 Score=39.79 Aligned_cols=70 Identities=7% Similarity=0.015 Sum_probs=41.1
Q ss_pred hhCCCcEEEEeCCCcccc--cccccccC----C-CCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCC
Q 005137 14 QHADDEVVEVIHIPDDEN--SHGVMGKS----D-NHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSN 84 (712)
Q Consensus 14 kelGydVIELNASDdR~r--n~~v~gsl----~-~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~ 84 (712)
-+.|+.|+-+++.+=... .....+.. . -.+..||||||++.+... ......|-++++. -+.|+|+|+|-.
T Consensus 131 ~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~~-~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 131 IENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKD-QAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred HHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccCC-HHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 346899999988662110 00000110 0 124679999999887553 3334455555543 246999999984
No 214
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=50.72 E-value=15 Score=36.30 Aligned_cols=41 Identities=20% Similarity=0.404 Sum_probs=29.9
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhcCCcEEEEecCC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSN 84 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekTKrPIILTCND~ 84 (712)
...+|||||+=.|=-.-.+|..++.+++. +..|+|.+-...
T Consensus 95 ~~~liviDEIG~mEl~~~~F~~~v~~~l~-s~~~vi~vv~~~ 135 (168)
T PF03266_consen 95 SSDLIVIDEIGKMELKSPGFREAVEKLLD-SNKPVIGVVHKR 135 (168)
T ss_dssp CCHEEEE---STTCCC-CHHHHHHHHHHC-TTSEEEEE--SS
T ss_pred CCCEEEEeccchhhhcCHHHHHHHHHHHc-CCCcEEEEEecC
Confidence 56899999999995557889999999998 777999998776
No 215
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=49.39 E-value=54 Score=36.37 Aligned_cols=127 Identities=13% Similarity=0.087 Sum_probs=74.2
Q ss_pred hhhHHHhhCCCcEEEEeCCCcccc------cccc--c---------ccCCC--CCCcEEEEeCCCCCChhhHHHHHHHHH
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDEN------SHGV--M---------GKSDN--HVKPLILIEDVDVFFPEDRGFIAGIQQ 68 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~r------n~~v--~---------gsl~~--~kkkLILIDEVD~LfeeDrGf~~AL~~ 68 (712)
.+..+|+.+|+.++.+|.+.+... ..+. . |.+.. ..+-++|+||+|....+-. .+|..
T Consensus 80 la~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEin~a~p~~~---~~L~~ 156 (327)
T TIGR01650 80 HIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDEYDAGRPDVM---FVIQR 156 (327)
T ss_pred HHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEechhhccCHHHH---HHHHH
Confidence 456789999999999999885432 1111 1 11100 2345699999999866533 44445
Q ss_pred HHHh---------c----CCc---EEEEecCCC-----------CCC-cccccce--eeEEcCCCHHHHHHHHHHHHHHc
Q 005137 69 IAEK---------A----KGP---VILTSNSNN-----------ITL-PDSLDRL--EVSFTMPMPKDLLSHLQMICAAE 118 (712)
Q Consensus 69 Liek---------T----KrP---IILTCND~n-----------~~L-pkllsrl--~IrFkrPs~~eI~srL~~Ic~~E 118 (712)
+++. . ..| +|.|+|... ..+ ...++|. .+.+..|+.+.-...|..-+ .
T Consensus 157 lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~--~ 234 (327)
T TIGR01650 157 VLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKA--K 234 (327)
T ss_pred HhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhc--c
Confidence 5441 0 122 577788642 112 2355774 45789999887777665443 2
Q ss_pred CCC--CCHHHHHHHHHHcCCcHHH
Q 005137 119 KVE--LQQHLLVQLIESCRADIRK 140 (712)
Q Consensus 119 Gik--Id~~~L~~LI~~S~GDIRq 140 (712)
++. .++..++.+++.. ..+|+
T Consensus 235 ~~~~~~~~~i~~~mV~la-~~tR~ 257 (327)
T TIGR01650 235 GFDDTEGKDIINAMVRVA-DMTRN 257 (327)
T ss_pred CCCccchHHHHHHHHHHH-HHHHh
Confidence 322 1356677776654 45555
No 216
>PRK10865 protein disaggregation chaperone; Provisional
Probab=49.21 E-value=28 Score=42.94 Aligned_cols=93 Identities=10% Similarity=0.127 Sum_probs=59.7
Q ss_pred CCcEEEEeCCCCCChh--hHHH---HHHHHHHHHhcCCcEEEEecCCCC----CC-cccccce-eeEEcCCCHHHHHHHH
Q 005137 43 VKPLILIEDVDVFFPE--DRGF---IAGIQQIAEKAKGPVILTSNSNNI----TL-PDSLDRL-EVSFTMPMPKDLLSHL 111 (712)
Q Consensus 43 kkkLILIDEVD~Lfee--DrGf---~~AL~~LiekTKrPIILTCND~n~----~L-pkllsrl-~IrFkrPs~~eI~srL 111 (712)
.+.|++|||+|.+... ..|. ...|...+.....-+|.++|.... -+ +.+..|+ .|.+..|+.++....|
T Consensus 271 ~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL 350 (857)
T PRK10865 271 GNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 350 (857)
T ss_pred CCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHH
Confidence 4679999999999643 1122 234455555566556666655321 01 2233443 6888999999888888
Q ss_pred HHHHHH----cCCCCCHHHHHHHHHHcC
Q 005137 112 QMICAA----EKVELQQHLLVQLIESCR 135 (712)
Q Consensus 112 ~~Ic~~----EGikId~~~L~~LI~~S~ 135 (712)
+.+..+ -++.+++.++.+.+..+.
T Consensus 351 ~~l~~~~e~~~~v~~~d~a~~~a~~ls~ 378 (857)
T PRK10865 351 RGLKERYELHHHVQITDPAIVAAATLSH 378 (857)
T ss_pred HHHhhhhccCCCCCcCHHHHHHHHHHhh
Confidence 776533 367888999888766654
No 217
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=48.98 E-value=56 Score=40.18 Aligned_cols=94 Identities=14% Similarity=0.189 Sum_probs=55.7
Q ss_pred CCCcEEEEeCCCCCChh------hHHH-HHHHHHHH----H---hcCCcEEEEe--cCCCCCCcccc-cc----eeeEEc
Q 005137 42 HVKPLILIEDVDVFFPE------DRGF-IAGIQQIA----E---KAKGPVILTS--NSNNITLPDSL-DR----LEVSFT 100 (712)
Q Consensus 42 ~kkkLILIDEVD~Lfee------DrGf-~~AL~~Li----e---kTKrPIILTC--ND~n~~Lpkll-sr----l~IrFk 100 (712)
..+++|++|++|.++.. .-|+ ...+..++ + +.++-|++|+ +... .+.+++ +. .+++.+
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~q-tl~~~L~s~~~Fq~~~~L~ 571 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQ-TLNPLLVSPLLFQIVIALP 571 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhh-hcChhhcCccceEEEEecC
Confidence 35899999999999652 1221 12222222 2 2334445555 4432 233333 22 567888
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Q 005137 101 MPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRA 136 (712)
Q Consensus 101 rPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~G 136 (712)
.|...+=...|..+|.+-...+..+.|+-+...+.|
T Consensus 572 ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEG 607 (952)
T KOG0735|consen 572 APAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEG 607 (952)
T ss_pred CcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCC
Confidence 898888888888888776655555666656555543
No 218
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=48.00 E-value=18 Score=37.05 Aligned_cols=88 Identities=13% Similarity=0.189 Sum_probs=51.7
Q ss_pred CCCcEEEEeCCCCCChhhHHHHHHHHHHHH--hcCCcEEEEecCCCCCCccccc--ceeeEEcCCCHHHHHHHHHHHHHH
Q 005137 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAE--KAKGPVILTSNSNNITLPDSLD--RLEVSFTMPMPKDLLSHLQMICAA 117 (712)
Q Consensus 42 ~kkkLILIDEVD~LfeeDrGf~~AL~~Lie--kTKrPIILTCND~n~~Lpklls--rl~IrFkrPs~~eI~srL~~Ic~~ 117 (712)
.++-|||||+|+... -+..+..... .....||+|+.+.. +..... ...++....+.++....+...+..
T Consensus 100 ~~~~LlVlDdv~~~~-----~~~~l~~~~~~~~~~~kilvTTR~~~--v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~ 172 (287)
T PF00931_consen 100 DKRCLLVLDDVWDEE-----DLEELREPLPSFSSGSKILVTTRDRS--VAGSLGGTDKVIELEPLSEEEALELFKKRAGR 172 (287)
T ss_dssp CTSEEEEEEEE-SHH-----HH-------HCHHSS-EEEEEESCGG--GGTTHHSCEEEEECSS--HHHHHHHHHHHHTS
T ss_pred cccceeeeeeecccc-----cccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccc
Confidence 347899999998664 2333333222 23567999998753 222222 367888889999988888888655
Q ss_pred cC---CCCCHHHHHHHHHHcCC
Q 005137 118 EK---VELQQHLLVQLIESCRA 136 (712)
Q Consensus 118 EG---ikId~~~L~~LI~~S~G 136 (712)
.. -.-.++...+|++.++|
T Consensus 173 ~~~~~~~~~~~~~~~i~~~c~g 194 (287)
T PF00931_consen 173 KESESPEDLEDLAKEIVEKCGG 194 (287)
T ss_dssp HS----TTSCTHHHHHHHHTTT
T ss_pred cccccccccccccccccccccc
Confidence 44 12224567889998877
No 219
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=47.36 E-value=48 Score=39.17 Aligned_cols=102 Identities=12% Similarity=0.120 Sum_probs=55.9
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhcC---------------CcEEEEecCCC---CCCcccccceee--EEcCC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKAK---------------GPVILTSNSNN---ITLPDSLDRLEV--SFTMP 102 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekTK---------------rPIILTCND~n---~~Lpkllsrl~I--rFkrP 102 (712)
.+.++++|||+.+... .+.+|.+.++... ..||.|+|-.. ...+.+++|+.+ ....+
T Consensus 84 ~~GvL~lDEi~rl~~~---~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~ 160 (589)
T TIGR02031 84 PRGVLYVDMANLLDDG---LSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDV 160 (589)
T ss_pred CCCcEeccchhhCCHH---HHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCC
Confidence 4579999999999765 5567777765422 23555555432 222346677433 33333
Q ss_pred C-HHH---HHHHHH----------------HHH----HHcCCCCCHHHHHHHHHH---cCCc-HHHHHHHHHH
Q 005137 103 M-PKD---LLSHLQ----------------MIC----AAEKVELQQHLLVQLIES---CRAD-IRKTIMHLQF 147 (712)
Q Consensus 103 s-~~e---I~srL~----------------~Ic----~~EGikId~~~L~~LI~~---S~GD-IRqaLN~LQf 147 (712)
+ ..+ |..+.. .|. ....+.+++++++.|+.. .+.+ .|..|-.+..
T Consensus 161 ~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ 233 (589)
T TIGR02031 161 ASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRA 233 (589)
T ss_pred CCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHH
Confidence 3 222 222211 111 123567898888877665 3444 6776665543
No 220
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=47.31 E-value=85 Score=34.72 Aligned_cols=65 Identities=18% Similarity=0.324 Sum_probs=39.0
Q ss_pred ccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhc-------------CCcEEEEecCC--CCCC-cccccc--eeeE
Q 005137 37 GKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSN--NITL-PDSLDR--LEVS 98 (712)
Q Consensus 37 gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekT-------------KrPIILTCND~--n~~L-pkllsr--l~Ir 98 (712)
|.+....+.++++||++.+... .+.+|.+.++.. ..|+|+++... ...+ +.+++| ..+.
T Consensus 125 GlL~~A~~GvL~lDEi~~L~~~---~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~ 201 (337)
T TIGR02030 125 GLLARANRGILYIDEVNLLEDH---LVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAE 201 (337)
T ss_pred CcceeccCCEEEecChHhCCHH---HHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEE
Confidence 3333334689999999999664 456666666542 24677777542 2122 346677 4556
Q ss_pred EcCCCH
Q 005137 99 FTMPMP 104 (712)
Q Consensus 99 FkrPs~ 104 (712)
+..|..
T Consensus 202 l~~p~~ 207 (337)
T TIGR02030 202 IRTVRD 207 (337)
T ss_pred CCCCCC
Confidence 666654
No 221
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=47.07 E-value=71 Score=35.34 Aligned_cols=59 Identities=20% Similarity=0.343 Sum_probs=36.9
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhc-------------CCcEEEEecCC--CCCCc-ccccc--eeeEEcCCCH
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSN--NITLP-DSLDR--LEVSFTMPMP 104 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekT-------------KrPIILTCND~--n~~Lp-kllsr--l~IrFkrPs~ 104 (712)
...++++||++.+... .+.+|.+.++.. ..|+++++... ...++ .+++| ..+....|..
T Consensus 128 ~~GiL~lDEInrl~~~---~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~ 204 (334)
T PRK13407 128 NRGYLYIDEVNLLEDH---IVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRD 204 (334)
T ss_pred CCCeEEecChHhCCHH---HHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCc
Confidence 3479999999999765 556777777643 25678887542 22233 35677 4555555554
No 222
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=45.64 E-value=11 Score=35.15 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=26.5
Q ss_pred CCcEEEEeCCCCCChhh-HHHHHHHHHHHHhc-CCcEEEEecC
Q 005137 43 VKPLILIEDVDVFFPED-RGFIAGIQQIAEKA-KGPVILTSNS 83 (712)
Q Consensus 43 kkkLILIDEVD~LfeeD-rGf~~AL~~LiekT-KrPIILTCND 83 (712)
.-.+|||||+|.+...+ ..-+..|.+.++.. +.|+|+++-.
T Consensus 119 ~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SAT 161 (169)
T PF00270_consen 119 RLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSAT 161 (169)
T ss_dssp TESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEESS
T ss_pred cceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEeeC
Confidence 36899999999998853 22344554444443 5677776644
No 223
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=44.49 E-value=32 Score=41.45 Aligned_cols=145 Identities=16% Similarity=0.145 Sum_probs=83.2
Q ss_pred cChhhHHHhhCCCcEEEEeCCCcc-------cc---cccccccCCCCCCcEEEEeCCCCCChh----hHHH-HHHHHHHH
Q 005137 6 TVSLCEAAQHADDEVVEVIHIPDD-------EN---SHGVMGKSDNHVKPLILIEDVDVFFPE----DRGF-IAGIQQIA 70 (712)
Q Consensus 6 a~~~~aIAkelGydVIELNASDdR-------~r---n~~v~gsl~~~kkkLILIDEVD~Lfee----DrGf-~~AL~~Li 70 (712)
++.+.++|++.+.+++-+-+-.-- ++ ..+-+. ....+.+|+|||+|.+... ..|. -+.|.+++
T Consensus 482 T~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kA--R~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLL 559 (693)
T KOG0730|consen 482 TLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKA--RQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLL 559 (693)
T ss_pred HHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHH--hhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHH
Confidence 456789999999999988664411 11 000000 0124589999999999542 1111 13444554
Q ss_pred Hh------cCCcEEEEe-cCCCCCCccccc--c--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHH----Hc
Q 005137 71 EK------AKGPVILTS-NSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQH-LLVQLIE----SC 134 (712)
Q Consensus 71 ek------TKrPIILTC-ND~n~~Lpklls--r--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~-~L~~LI~----~S 134 (712)
.. .|.=+|+.+ |-+...=+.++. | ..|.+..|+.+.=...|+. ..++++++++ .|++|++ ++
T Consensus 560 tEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~--~~kkmp~~~~vdl~~La~~T~g~S 637 (693)
T KOG0730|consen 560 TEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQ--CAKKMPFSEDVDLEELAQATEGYS 637 (693)
T ss_pred HHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHH--HHhcCCCCccccHHHHHHHhccCC
Confidence 43 233344444 444332233333 3 4577777765544444433 2346777766 7888887 47
Q ss_pred CCcHHHHHHHHHHHhhcCCC
Q 005137 135 RADIRKTIMHLQFWCQNKGY 154 (712)
Q Consensus 135 ~GDIRqaLN~LQf~s~s~~~ 154 (712)
+.||+.....--..+....+
T Consensus 638 GAel~~lCq~A~~~a~~e~i 657 (693)
T KOG0730|consen 638 GAEIVAVCQEAALLALRESI 657 (693)
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 88999988877776665543
No 224
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=44.46 E-value=59 Score=33.98 Aligned_cols=113 Identities=15% Similarity=0.171 Sum_probs=61.3
Q ss_pred hHHHhhCCCcEEEEeCCCcccc---cccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--------------
Q 005137 10 CEAAQHADDEVVEVIHIPDDEN---SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK-------------- 72 (712)
Q Consensus 10 ~aIAkelGydVIELNASDdR~r---n~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek-------------- 72 (712)
..+|+.+|..++-+|.++...- ..+.+|.... .--+.|||++.|..+ -+++|.+.+..
T Consensus 50 k~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~--GaW~cfdefnrl~~~---vLS~i~~~i~~i~~al~~~~~~~~~ 124 (231)
T PF12774_consen 50 KDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQS--GAWLCFDEFNRLSEE---VLSVISQQIQSIQDALRAKQKSFTL 124 (231)
T ss_dssp HHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHH--T-EEEEETCCCSSHH---HHHHHHHHHHHHHHHHHCTSSEEEE
T ss_pred HHHHHHhCCeEEEecccccccHHHHHHHHHHHhhc--CchhhhhhhhhhhHH---HHHHHHHHHHHHHHhhccccccccc
Confidence 4689999999999999996532 2333342222 368999999999664 44444433332
Q ss_pred --------cCCcEEEEecCCC---CCCcccccc--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005137 73 --------AKGPVILTSNSNN---ITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQL 130 (712)
Q Consensus 73 --------TKrPIILTCND~n---~~Lpkllsr--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~L 130 (712)
-..-|.+|.|..+ ..+|..+.. -.+.+..|+...|. +.++...|+.=....-.+|
T Consensus 125 ~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lFRpvam~~PD~~~I~---ei~L~s~GF~~a~~La~kl 192 (231)
T PF12774_consen 125 EGQEIKLNPNCGIFITMNPGYAGRSELPENLKALFRPVAMMVPDLSLIA---EILLLSQGFKDAKSLAKKL 192 (231)
T ss_dssp TTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTEEEEE--S--HHHHH---HHHHHCCCTSSHHHHHHHH
T ss_pred CCCEEEEccceeEEEeeccccCCcccCCHhHHHHhheeEEeCCCHHHHH---HHHHHHcCchhHHHHHHHH
Confidence 0234677777543 356766665 46778888766554 4557788876444443333
No 225
>PF15471 TMEM171: Transmembrane protein family 171
Probab=43.79 E-value=15 Score=39.80 Aligned_cols=64 Identities=23% Similarity=0.392 Sum_probs=52.8
Q ss_pred hhhHHHhhhccccccchhhhhhhhcC---CCCCCCCCCCcCCCCCcccchhhhHHhHhHhhhhcceeeee
Q 005137 523 AFQIIKLTHGMCDLISEADLLLSKCQ---SPDFLELPMFPHEDLDACAWRDEQLQLTSSIVQHGFSIYAK 589 (712)
Q Consensus 523 a~~~~~la~~~snlISEadl~~~~c~---~~d~~~~~~~~~~e~~~~s~~~~q~~m~St~aqh~fc~~ak 589 (712)
-++.|=|++|| |||==-..-=.|. ..+.+.-..+...|+..+..-..|+ |+=.|+=-|+|||.-
T Consensus 113 IFGFLFLTSGm--LISvLGiWVPGC~~~w~~~~lN~T~t~~~e~q~CGFLslQI-mGPlIVl~GLCFFVV 179 (319)
T PF15471_consen 113 IFGFLFLTSGM--LISVLGIWVPGCGSGWPQEPLNETDTSDSEPQICGFLSLQI-MGPLIVLVGLCFFVV 179 (319)
T ss_pred HHHHHHHhhhh--hhhhheeeecCCCCCCccccccCCCCCCCCccccceeehhh-hhhHHHHHhhhhhhe
Confidence 47889999999 8886666666777 3456666667778999999999999 999999999999963
No 226
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=43.72 E-value=52 Score=39.30 Aligned_cols=142 Identities=16% Similarity=0.122 Sum_probs=82.8
Q ss_pred cChhhHHHhhCCCcEEEEeCCCcccc---------cccccccCCCCCCcEEEEeCCCCCChhh-H---HHH----HHHHH
Q 005137 6 TVSLCEAAQHADDEVVEVIHIPDDEN---------SHGVMGKSDNHVKPLILIEDVDVFFPED-R---GFI----AGIQQ 68 (712)
Q Consensus 6 a~~~~aIAkelGydVIELNASDdR~r---------n~~v~gsl~~~kkkLILIDEVD~LfeeD-r---Gf~----~AL~~ 68 (712)
.+.+.++|-+.|...+.+..||-.+- ...+... .+..+-+|+|||+|.+.... . |+- ..|.+
T Consensus 197 TLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qA-kk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQ 275 (596)
T COG0465 197 TLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQA-KKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQ 275 (596)
T ss_pred HHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHh-hccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHH
Confidence 57889999999999999999993320 0111110 01235699999999996542 0 121 24445
Q ss_pred HHHh-----cCCcEEEEecCCCC-CC-ccccc--c--eeeEEcCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHH-
Q 005137 69 IAEK-----AKGPVILTSNSNNI-TL-PDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQ----QHLLVQLIE- 132 (712)
Q Consensus 69 Liek-----TKrPIILTCND~n~-~L-pklls--r--l~IrFkrPs~~eI~srL~~Ic~~EGikId----~~~L~~LI~- 132 (712)
++-. ++.+||++++...+ .+ +.++. | -.|....|+...-...|+ ++..+.+++ ...|.+..-
T Consensus 276 lLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~Ilk--vH~~~~~l~~~Vdl~~iAr~tpG 353 (596)
T COG0465 276 LLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILK--VHAKNKPLAEDVDLKKIARGTPG 353 (596)
T ss_pred HHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHH--HHhhcCCCCCcCCHHHHhhhCCC
Confidence 4433 45788888866432 22 22221 1 457778888766666666 444444443 333333222
Q ss_pred HcCCcHHHHHHHHHHHhh
Q 005137 133 SCRADIRKTIMHLQFWCQ 150 (712)
Q Consensus 133 ~S~GDIRqaLN~LQf~s~ 150 (712)
.++.|+-..+|.--.++.
T Consensus 354 fsGAdL~nl~NEAal~aa 371 (596)
T COG0465 354 FSGADLANLLNEAALLAA 371 (596)
T ss_pred cccchHhhhHHHHHHHHH
Confidence 267788888886655443
No 227
>PRK08939 primosomal protein DnaI; Reviewed
Probab=43.47 E-value=30 Score=37.55 Aligned_cols=76 Identities=14% Similarity=0.099 Sum_probs=42.3
Q ss_pred hhhHHHhhC---CCcEEEEeCCCc--ccccccccccC----C-CCCCcEEEEeCCCCCChhhHHHHHHHH-HHHH---hc
Q 005137 8 SLCEAAQHA---DDEVVEVIHIPD--DENSHGVMGKS----D-NHVKPLILIEDVDVFFPEDRGFIAGIQ-QIAE---KA 73 (712)
Q Consensus 8 ~~~aIAkel---GydVIELNASDd--R~rn~~v~gsl----~-~~kkkLILIDEVD~LfeeDrGf~~AL~-~Lie---kT 73 (712)
.++++|+++ |+.|.-+.+.+= .-++....+++ . -.+-.|+||||+....-.+-+ ...|. .++. ..
T Consensus 172 La~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e~~s~~~-~~~ll~~Il~~R~~~ 250 (306)
T PRK08939 172 LLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVKEAPVLMLDDIGAEQMSSWV-RDEVLGVILQYRMQE 250 (306)
T ss_pred HHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcCCCEEEEecCCCccccHHH-HHHHHHHHHHHHHHC
Confidence 456677666 899988888761 11111111111 0 135689999999765332211 11232 2322 35
Q ss_pred CCcEEEEecCC
Q 005137 74 KGPVILTSNSN 84 (712)
Q Consensus 74 KrPIILTCND~ 84 (712)
+.|+|+|+|-.
T Consensus 251 ~~~ti~TSNl~ 261 (306)
T PRK08939 251 ELPTFFTSNFD 261 (306)
T ss_pred CCeEEEECCCC
Confidence 68999999974
No 228
>PRK08116 hypothetical protein; Validated
Probab=43.40 E-value=42 Score=35.58 Aligned_cols=74 Identities=15% Similarity=-0.022 Sum_probs=41.9
Q ss_pred hhhHHHhhC---CCcEEEEeCCCccc--ccccc---c----ccCC-CCCCcEEEEeCCCC--CChhhHHHHHHHHHHHHh
Q 005137 8 SLCEAAQHA---DDEVVEVIHIPDDE--NSHGV---M----GKSD-NHVKPLILIEDVDV--FFPEDRGFIAGIQQIAEK 72 (712)
Q Consensus 8 ~~~aIAkel---GydVIELNASDdR~--rn~~v---~----gsl~-~~kkkLILIDEVD~--LfeeDrGf~~AL~~Liek 72 (712)
.++++|+++ |+.|+-+|+++-.. +..+. . ..+. -....|+||||+.. .++. ....|..++..
T Consensus 130 La~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~~t~~---~~~~l~~iin~ 206 (268)
T PRK08116 130 LAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGAERDTEW---AREKVYNIIDS 206 (268)
T ss_pred HHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccCCCCCHH---HHHHHHHHHHH
Confidence 345666653 88999999876111 00100 0 0000 12347999999954 3332 23445555543
Q ss_pred ---cCCcEEEEecCC
Q 005137 73 ---AKGPVILTSNSN 84 (712)
Q Consensus 73 ---TKrPIILTCND~ 84 (712)
...|+|+|+|-.
T Consensus 207 r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 207 RYRKGLPTIVTTNLS 221 (268)
T ss_pred HHHCCCCEEEECCCC
Confidence 567999999975
No 229
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=42.07 E-value=66 Score=36.71 Aligned_cols=134 Identities=14% Similarity=0.095 Sum_probs=88.2
Q ss_pred CCCcEEEEeCCCcccc------cccccccCCC-----------CCCcEEEEeCCCCCChhhHHHHHHHHHHHHh------
Q 005137 16 ADDEVVEVIHIPDDEN------SHGVMGKSDN-----------HVKPLILIEDVDVFFPEDRGFIAGIQQIAEK------ 72 (712)
Q Consensus 16 lGydVIELNASDdR~r------n~~v~gsl~~-----------~kkkLILIDEVD~LfeeDrGf~~AL~~Liek------ 72 (712)
.+..+|-+|.++--+. ....+|.++| -....+++|||--|.-+ ++..|..++++
T Consensus 129 ~~~PFI~~NCa~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~---~Q~kLl~~le~g~~~rv 205 (403)
T COG1221 129 AEAPFIAFNCAAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPE---GQEKLLRVLEEGEYRRV 205 (403)
T ss_pred cCCCEEEEEHHHhCcCHHHHHHhccccceeecccCCcCchheecCCCEEehhhhhhCCHh---HHHHHHHHHHcCceEec
Confidence 4667888888773221 1122232222 23578999999999875 56677777775
Q ss_pred -------cCCcEEEEecCCC--CCCc--ccccc-eeeEEcCCCH--------HHHHHHHHHHHHHcCCCCC---HHHHHH
Q 005137 73 -------AKGPVILTSNSNN--ITLP--DSLDR-LEVSFTMPMP--------KDLLSHLQMICAAEKVELQ---QHLLVQ 129 (712)
Q Consensus 73 -------TKrPIILTCND~n--~~Lp--kllsr-l~IrFkrPs~--------~eI~srL~~Ic~~EGikId---~~~L~~ 129 (712)
..+++|+.+|..- ..+. .++.| ..+..+-|+. ..+.-++...|.+-|..+. +.++..
T Consensus 206 G~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~ 285 (403)
T COG1221 206 GGSQPRPVDVRLICATTEDLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRA 285 (403)
T ss_pred CCCCCcCCCceeeeccccCHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 3577899888852 2233 45554 4444555553 3345566677888887653 577888
Q ss_pred HHHH-cCCcHHHHHHHHHHHhhcC
Q 005137 130 LIES-CRADIRKTIMHLQFWCQNK 152 (712)
Q Consensus 130 LI~~-S~GDIRqaLN~LQf~s~s~ 152 (712)
|..+ .-|+||..-|..++.+...
T Consensus 286 L~~y~~pGNirELkN~Ve~~~~~~ 309 (403)
T COG1221 286 LLAYDWPGNIRELKNLVERAVAQA 309 (403)
T ss_pred HHhCCCCCcHHHHHHHHHHHHHHh
Confidence 8887 4899999999999887654
No 230
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=38.79 E-value=94 Score=37.42 Aligned_cols=89 Identities=12% Similarity=0.198 Sum_probs=55.9
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhcC-----------------------CcEEEEecCCC--CCCcccccc---
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKAK-----------------------GPVILTSNSNN--ITLPDSLDR--- 94 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekTK-----------------------rPIILTCND~n--~~Lpkllsr--- 94 (712)
.+..++|||++.|.. ..|..|.++++.-+ ..||+++|..- ..-+.++.+
T Consensus 226 nGGtL~LDei~~L~~---~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpdL~~rfk~ 302 (637)
T PRK13765 226 HKGVLFIDEINTLDL---ESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPALRSRIKG 302 (637)
T ss_pred CCcEEEEeChHhCCH---HHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhHHHHHHhcc
Confidence 468999999999943 46778888775432 23677776631 112223233
Q ss_pred --eeeEEcC---CCHHHHHHHHHHHHHH---c-C-CCCCHHHHHHHHHHc
Q 005137 95 --LEVSFTM---PMPKDLLSHLQMICAA---E-K-VELQQHLLVQLIESC 134 (712)
Q Consensus 95 --l~IrFkr---Ps~~eI~srL~~Ic~~---E-G-ikId~~~L~~LI~~S 134 (712)
..+.|+. -+++.+..+++.|+.. + + ..++++++..|+++.
T Consensus 303 ~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~ 352 (637)
T PRK13765 303 YGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREA 352 (637)
T ss_pred CeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHH
Confidence 2355542 2356677777777643 3 2 368999999999864
No 231
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=36.92 E-value=30 Score=31.80 Aligned_cols=61 Identities=11% Similarity=0.129 Sum_probs=37.3
Q ss_pred hhHHHhhCCCcEEEEeCCCcccc-------------cccccccCCC--CCCcEEEEeCCCCCChhhHHHHHHHHHHHHh
Q 005137 9 LCEAAQHADDEVVEVIHIPDDEN-------------SHGVMGKSDN--HVKPLILIEDVDVFFPEDRGFIAGIQQIAEK 72 (712)
Q Consensus 9 ~~aIAkelGydVIELNASDdR~r-------------n~~v~gsl~~--~kkkLILIDEVD~LfeeDrGf~~AL~~Liek 72 (712)
+..+|+.+++.++.++.+.+... ..+..+.+.. .+..+++|||++.... ..+.+|..+++.
T Consensus 16 ~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~~---~v~~~L~~ll~~ 91 (139)
T PF07728_consen 16 ARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAPP---EVLESLLSLLEE 91 (139)
T ss_dssp HHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG--H---HHHHTTHHHHSS
T ss_pred HHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCCH---HHHHHHHHHHhh
Confidence 45677888999999999874321 1111222211 2568999999998864 466777777763
No 232
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=36.73 E-value=94 Score=37.05 Aligned_cols=27 Identities=11% Similarity=0.279 Sum_probs=21.0
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHh
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK 72 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~Liek 72 (712)
.+.++++|||+.|... .+.+|.++++.
T Consensus 126 ~~GiL~lDEi~~l~~~---~q~~Ll~~le~ 152 (633)
T TIGR02442 126 HRGILYIDEVNLLDDH---LVDVLLDAAAM 152 (633)
T ss_pred CCCeEEeChhhhCCHH---HHHHHHHHHhc
Confidence 4579999999999775 45677777764
No 233
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=36.61 E-value=2.3e+02 Score=33.14 Aligned_cols=107 Identities=11% Similarity=0.054 Sum_probs=72.8
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHh-------------cCCcEEEEecCCC-------CCCcccccc-eeeEEcC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK-------------AKGPVILTSNSNN-------ITLPDSLDR-LEVSFTM 101 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~Liek-------------TKrPIILTCND~n-------~~Lpkllsr-l~IrFkr 101 (712)
...-+++|||--|.-+ .+.-|.+++.. ..++||.++|-.- ..-..++-| .++++.-
T Consensus 235 ~GGTLfLDEI~~mpl~---~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~i 311 (464)
T COG2204 235 NGGTLFLDEIGEMPLE---LQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVAAGRFREDLYYRLNVVPLRL 311 (464)
T ss_pred CCceEEeeccccCCHH---HHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHHHcCCcHHHHHhhhccceecC
Confidence 4578999999999765 33444444443 2345777776531 112223344 4567766
Q ss_pred CCH--------HHHHHHHHHHHHHcCC---CCCHHHHHHHHHHc-CCcHHHHHHHHHHHhhcC
Q 005137 102 PMP--------KDLLSHLQMICAAEKV---ELQQHLLVQLIESC-RADIRKTIMHLQFWCQNK 152 (712)
Q Consensus 102 Ps~--------~eI~srL~~Ic~~EGi---kId~~~L~~LI~~S-~GDIRqaLN~LQf~s~s~ 152 (712)
|+. .-+.-+|...|...|. .++++++..|..+. -|++|+.-|.++......
T Consensus 312 PpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il~ 374 (464)
T COG2204 312 PPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVRELENVVERAVILS 374 (464)
T ss_pred CcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHHhcC
Confidence 663 3456677788887776 58999999998885 899999999999777654
No 234
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=36.20 E-value=1.6e+02 Score=32.96 Aligned_cols=103 Identities=17% Similarity=0.248 Sum_probs=59.4
Q ss_pred CCCcEEEEeCCCCCChhhHHHHHHHHHHHHh-------------cCCcEEEEecCC--C-CCCcccccc--eeeEEcCCC
Q 005137 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEK-------------AKGPVILTSNSN--N-ITLPDSLDR--LEVSFTMPM 103 (712)
Q Consensus 42 ~kkkLILIDEVD~LfeeDrGf~~AL~~Liek-------------TKrPIILTCND~--n-~~Lpkllsr--l~IrFkrPs 103 (712)
....++++||++.+... .+.+|.+.++. ...|+|++++.. . ...+.+++| ..+.+..|.
T Consensus 143 A~~GiL~lDEInrL~~~---~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~ 219 (350)
T CHL00081 143 ANRGILYVDEVNLLDDH---LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVK 219 (350)
T ss_pred cCCCEEEecChHhCCHH---HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCC
Confidence 34689999999999876 44556666543 235788888543 1 123345677 456677776
Q ss_pred H-HH---HHHH----------------------HHHHHH----HcCCCCCHHHHHHHHHH---cCC-cHHHHHHHHHH
Q 005137 104 P-KD---LLSH----------------------LQMICA----AEKVELQQHLLVQLIES---CRA-DIRKTIMHLQF 147 (712)
Q Consensus 104 ~-~e---I~sr----------------------L~~Ic~----~EGikId~~~L~~LI~~---S~G-DIRqaLN~LQf 147 (712)
. .. |..+ ...|.. -.++.+++.+++.|++. .+. -.|..|..++.
T Consensus 220 ~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~ra 297 (350)
T CHL00081 220 DPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRA 297 (350)
T ss_pred ChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHH
Confidence 3 21 2221 111211 13567888887766554 332 37777766543
No 235
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=35.62 E-value=99 Score=36.84 Aligned_cols=88 Identities=14% Similarity=0.233 Sum_probs=54.6
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhcC-----------------------CcEEEEecCC--CCCCccccccee-
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKAK-----------------------GPVILTSNSN--NITLPDSLDRLE- 96 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekTK-----------------------rPIILTCND~--n~~Lpkllsrl~- 96 (712)
.+.+++|||+|.|... .|..|.++++..+ ..||+++|-. ...-+.++++..
T Consensus 217 ngGtL~Ldei~~L~~~---~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~~rf~~ 293 (608)
T TIGR00764 217 HKGVLYIDEIKTMPLE---VQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALRSRIRG 293 (608)
T ss_pred CCCEEEEEChHhCCHH---HHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHHHHhcC
Confidence 4689999999999853 6677777775422 2367777642 122333444432
Q ss_pred ----eEEc--CCC-H---HHHHHHHHHHHHHcC-C-CCCHHHHHHHHHH
Q 005137 97 ----VSFT--MPM-P---KDLLSHLQMICAAEK-V-ELQQHLLVQLIES 133 (712)
Q Consensus 97 ----IrFk--rPs-~---~eI~srL~~Ic~~EG-i-kId~~~L~~LI~~ 133 (712)
+.|+ .|. . ..+..++...+.+.| + .+++++++.|++.
T Consensus 294 y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~ 342 (608)
T TIGR00764 294 YGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVRE 342 (608)
T ss_pred CeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHH
Confidence 3442 232 3 335566666677775 3 5899999999875
No 236
>PRK07952 DNA replication protein DnaC; Validated
Probab=34.78 E-value=67 Score=33.92 Aligned_cols=76 Identities=16% Similarity=0.075 Sum_probs=44.5
Q ss_pred hhhHHHhhC---CCcEEEEeCCCccc--ccccccc------cCC-CCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh---
Q 005137 8 SLCEAAQHA---DDEVVEVIHIPDDE--NSHGVMG------KSD-NHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--- 72 (712)
Q Consensus 8 ~~~aIAkel---GydVIELNASDdR~--rn~~v~g------sl~-~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--- 72 (712)
.++++|+++ |..|+-+.+.|=.. +..+... .+. -....||||||++.....+ .....|.+++..
T Consensus 115 La~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~~~s~-~~~~~l~~Ii~~Ry~ 193 (244)
T PRK07952 115 LAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQTESR-YEKVIINQIVDRRSS 193 (244)
T ss_pred HHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCCCCCH-HHHHHHHHHHHHHHh
Confidence 345666665 78888888766211 1010000 000 1246799999999886432 223345556553
Q ss_pred cCCcEEEEecCC
Q 005137 73 AKGPVILTSNSN 84 (712)
Q Consensus 73 TKrPIILTCND~ 84 (712)
.+.|+|+|+|-.
T Consensus 194 ~~~~tiitSNl~ 205 (244)
T PRK07952 194 SKRPTGMLTNSN 205 (244)
T ss_pred CCCCEEEeCCCC
Confidence 478999999974
No 237
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=34.16 E-value=2e+02 Score=31.35 Aligned_cols=85 Identities=15% Similarity=0.194 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCCcEEEEecCCCCCCcccccceeeEEcCCCHHHHHHHHHHHHHHcCC--------CCCHHHHHHHHHH
Q 005137 62 FIAGIQQIAEKAKGPVILTSNSNNITLPDSLDRLEVSFTMPMPKDLLSHLQMICAAEKV--------ELQQHLLVQLIES 133 (712)
Q Consensus 62 f~~AL~~LiekTKrPIILTCND~n~~Lpkllsrl~IrFkrPs~~eI~srL~~Ic~~EGi--------kId~~~L~~LI~~ 133 (712)
...+|.++....+.|||+-=+-.+ +..++.. +...++...+++..+.......|. .+||..... .
T Consensus 77 a~~~i~~~~~~g~~pi~vGGTg~Y--i~all~g--~~~~p~~~~~~r~~l~~~~~~~g~~~l~~~L~~~DP~~a~~---i 149 (287)
T TIGR00174 77 ALNAIADITARGKIPLLVGGTGLY--LKALLEG--LSPTPSADKLIREQLEILAEEQGWDFLYNELKKVDPVAAAK---I 149 (287)
T ss_pred HHHHHHHHHhCCCCEEEEcCcHHH--HHHHHcC--CCCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHh---c
Confidence 345666677778889887665533 2222222 112234456788888877666663 456655443 3
Q ss_pred cCCcHHHHHHHHHHHhhcCC
Q 005137 134 CRADIRKTIMHLQFWCQNKG 153 (712)
Q Consensus 134 S~GDIRqaLN~LQf~s~s~~ 153 (712)
..+|.|+.+..|+.+..++.
T Consensus 150 ~~nd~~Ri~RALEi~~~tG~ 169 (287)
T TIGR00174 150 HPNDTRRVQRALEVFYATGK 169 (287)
T ss_pred CCccHHHHHHHHHHHHHHCC
Confidence 67999999999999887764
No 238
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=33.99 E-value=56 Score=30.50 Aligned_cols=39 Identities=13% Similarity=0.309 Sum_probs=27.7
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHh---cCCcEEEEecCC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK---AKGPVILTSNSN 84 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~Liek---TKrPIILTCND~ 84 (712)
+...++|+|+|.+..+.+ ..|..+++. .+.++|++|...
T Consensus 69 ~~gtL~l~~i~~L~~~~Q---~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 69 KGGTLYLKNIDRLSPEAQ---RRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp TTSEEEEECGCCS-HHHH---HHHHHHHHHCTTTTSEEEEEECC-
T ss_pred CCCEEEECChHHCCHHHH---HHHHHHHHhcCCCCeEEEEEeCCC
Confidence 567899999999988744 455555554 467899999763
No 239
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=33.80 E-value=87 Score=30.18 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=30.2
Q ss_pred CCcEEEEeCCCCCChh-h-HHHHHHHHHHHHhcCCcEEEEecCCC
Q 005137 43 VKPLILIEDVDVFFPE-D-RGFIAGIQQIAEKAKGPVILTSNSNN 85 (712)
Q Consensus 43 kkkLILIDEVD~Lfee-D-rGf~~AL~~LiekTKrPIILTCND~n 85 (712)
+++++|+||...=++. + +.+..+|.++... .+.+|+++.+..
T Consensus 99 ~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~~ 142 (162)
T cd03227 99 PRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPE 142 (162)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHH
Confidence 5789999999888765 2 3455677777665 567888887753
No 240
>PRK12377 putative replication protein; Provisional
Probab=33.09 E-value=83 Score=33.33 Aligned_cols=75 Identities=12% Similarity=0.058 Sum_probs=42.7
Q ss_pred hhHHHhhC---CCcEEEEeCCCcccc--cccccc-----cCC-CCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh---cC
Q 005137 9 LCEAAQHA---DDEVVEVIHIPDDEN--SHGVMG-----KSD-NHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK---AK 74 (712)
Q Consensus 9 ~~aIAkel---GydVIELNASDdR~r--n~~v~g-----sl~-~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek---TK 74 (712)
++++|+++ |+.|+-+++.+-... ..+..+ .+. -.+-.||||||+...... ......|..++.. .+
T Consensus 118 a~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~~s-~~~~~~l~~ii~~R~~~~ 196 (248)
T PRK12377 118 AAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRET-KNEQVVLNQIIDRRTASM 196 (248)
T ss_pred HHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCC-HHHHHHHHHHHHHHHhcC
Confidence 34444443 788988888762211 111001 010 134689999999766332 2234456666654 46
Q ss_pred CcEEEEecCC
Q 005137 75 GPVILTSNSN 84 (712)
Q Consensus 75 rPIILTCND~ 84 (712)
+|+|+|+|-.
T Consensus 197 ~ptiitSNl~ 206 (248)
T PRK12377 197 RSVGMLTNLN 206 (248)
T ss_pred CCEEEEcCCC
Confidence 8999999974
No 241
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=32.48 E-value=43 Score=28.82 Aligned_cols=20 Identities=10% Similarity=0.370 Sum_probs=15.8
Q ss_pred CCcEEEEeCCCCCChhhHHH
Q 005137 43 VKPLILIEDVDVFFPEDRGF 62 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf 62 (712)
...+|||||+|.+.......
T Consensus 103 ~~~~iiiDE~h~~~~~~~~~ 122 (144)
T cd00046 103 KLDLLILDEAHRLLNQGFGL 122 (144)
T ss_pred cCCEEEEeCHHHHhhcchHH
Confidence 56899999999998765433
No 242
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=32.44 E-value=1.2e+02 Score=37.66 Aligned_cols=112 Identities=16% Similarity=0.180 Sum_probs=71.5
Q ss_pred hhHHHhhCCCcEEEEeCCC----cccc--ccccccc--CCCCCCcEEEEeCCCCCCh-----hhHHHHHHHHHHHH----
Q 005137 9 LCEAAQHADDEVVEVIHIP----DDEN--SHGVMGK--SDNHVKPLILIEDVDVFFP-----EDRGFIAGIQQIAE---- 71 (712)
Q Consensus 9 ~~aIAkelGydVIELNASD----dR~r--n~~v~gs--l~~~kkkLILIDEVD~Lfe-----eDrGf~~AL~~Lie---- 71 (712)
-.++|+++|.+++|+.... .+.. .+..... -....+-+|++=..|.+.- +|.-....|..++.
T Consensus 448 V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~ 527 (953)
T KOG0736|consen 448 VRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDF 527 (953)
T ss_pred HHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccc
Confidence 4678999999999998755 1110 0000000 0112467888888888843 25555666666655
Q ss_pred h-cCCcEEEEecCCC-CCCcccccc---eeeEEcCCCHHHHHHHHHHHHHHcCC
Q 005137 72 K-AKGPVILTSNSNN-ITLPDSLDR---LEVSFTMPMPKDLLSHLQMICAAEKV 120 (712)
Q Consensus 72 k-TKrPIILTCND~n-~~Lpkllsr---l~IrFkrPs~~eI~srL~~Ic~~EGi 120 (712)
+ .+.|+|++|+-.+ ..+|..+++ ..|.+..|+.++=...|+.....+.+
T Consensus 528 ~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~ 581 (953)
T KOG0736|consen 528 KFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPL 581 (953)
T ss_pred cCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhcccc
Confidence 1 4456777776654 356666665 68999999999888888877766554
No 243
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=31.86 E-value=1.1e+02 Score=33.44 Aligned_cols=84 Identities=19% Similarity=0.255 Sum_probs=53.9
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCCCcccccceeeEEcCCCHHHHHHHHHHHHHHcCC--------CCCHHHHHHHHHHc
Q 005137 63 IAGIQQIAEKAKGPVILTSNSNNITLPDSLDRLEVSFTMPMPKDLLSHLQMICAAEKV--------ELQQHLLVQLIESC 134 (712)
Q Consensus 63 ~~AL~~LiekTKrPIILTCND~n~~Lpkllsrl~IrFkrPs~~eI~srL~~Ic~~EGi--------kId~~~L~~LI~~S 134 (712)
...|.++.++.+.|||+--.-.+ +..++.... ..+|....++.+|......+|. .+||...+. ..
T Consensus 83 ~~~i~~i~~~gk~pIlvGGt~~Y--~~al~~g~~--~~p~~~~~~r~~l~~~~~~~g~~~l~~~L~~~Dp~~a~~---i~ 155 (307)
T PRK00091 83 LAAIADILARGKLPILVGGTGLY--IKALLEGLS--PLPPADPELRAELEALAAEEGWEALHAELAEIDPEAAAR---IH 155 (307)
T ss_pred HHHHHHHHhCCCCEEEECcHHHH--HHHhccCCC--CCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhcCHHHHhh---cC
Confidence 44566666778888887333321 122222211 3456678899999988777773 355554443 35
Q ss_pred CCcHHHHHHHHHHHhhcCC
Q 005137 135 RADIRKTIMHLQFWCQNKG 153 (712)
Q Consensus 135 ~GDIRqaLN~LQf~s~s~~ 153 (712)
.+|.|+.+..|+.+..++.
T Consensus 156 ~~d~~Ri~RAlEi~~~tG~ 174 (307)
T PRK00091 156 PNDPQRIIRALEVYELTGK 174 (307)
T ss_pred CCCCchhHHHHHHHHHHCC
Confidence 7999999999999887764
No 244
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=31.77 E-value=2.5e+02 Score=36.01 Aligned_cols=100 Identities=17% Similarity=0.313 Sum_probs=59.0
Q ss_pred CCCCcEEEEeCCCCCChh-----hH---HHHHHHHHHHH--hcCCcEEEEe--cCCCCCCcccccc----eeeEEcCCCH
Q 005137 41 NHVKPLILIEDVDVFFPE-----DR---GFIAGIQQIAE--KAKGPVILTS--NSNNITLPDSLDR----LEVSFTMPMP 104 (712)
Q Consensus 41 ~~kkkLILIDEVD~Lfee-----Dr---Gf~~AL~~Lie--kTKrPIILTC--ND~n~~Lpkllsr----l~IrFkrPs~ 104 (712)
+..+.+|.||||||+.-- ++ .-+..|..++- .++-|+|+|. |.+...-|.++.. -.+.|.-|+.
T Consensus 361 k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~ 440 (1080)
T KOG0732|consen 361 KTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDV 440 (1080)
T ss_pred ccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCccccchhhcCCcccceeEeeeCCch
Confidence 356899999999999432 11 12233444433 2566777775 4444333434322 5788988886
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc----CCcHHH
Q 005137 105 KDLLSHLQMICAAEKVELQQHLLVQLIESC----RADIRK 140 (712)
Q Consensus 105 ~eI~srL~~Ic~~EGikId~~~L~~LI~~S----~GDIRq 140 (712)
+.=...|.-=-.+..=++....+..|++.+ +.|||.
T Consensus 441 ~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlka 480 (1080)
T KOG0732|consen 441 DARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKA 480 (1080)
T ss_pred HHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHH
Confidence 554444433334444678888888888764 456554
No 245
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=31.01 E-value=43 Score=37.93 Aligned_cols=43 Identities=23% Similarity=0.517 Sum_probs=32.4
Q ss_pred CCCcEEEEeCCCCC-ChhhHHHHHHHHHHHHhcCCcEEEEecCC
Q 005137 42 HVKPLILIEDVDVF-FPEDRGFIAGIQQIAEKAKGPVILTSNSN 84 (712)
Q Consensus 42 ~kkkLILIDEVD~L-feeDrGf~~AL~~LiekTKrPIILTCND~ 84 (712)
....+||+||||.. +..|+....|+.+-.++-.--|+||++..
T Consensus 201 ~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~IylTATp~ 244 (441)
T COG4098 201 QAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATIYLTATPT 244 (441)
T ss_pred hhccEEEEeccccccccCCHHHHHHHHHhhcccCceEEEecCCh
Confidence 45789999999999 44578777888777666555577887765
No 246
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=31.01 E-value=1.2e+02 Score=38.70 Aligned_cols=69 Identities=16% Similarity=0.160 Sum_probs=36.1
Q ss_pred CCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCCCCCcccccceeeEEcCCCHHHHHHHHHHHHH
Q 005137 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLPDSLDRLEVSFTMPMPKDLLSHLQMICA 116 (712)
Q Consensus 42 ~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n~~Lpkllsrl~IrFkrPs~~eI~srL~~Ic~ 116 (712)
.++-|||+||||.. .-+.+|...... ....||+|+.|... +........+....|+.++-...+...+.
T Consensus 295 ~krvLLVLDdv~~~-----~~l~~L~~~~~~~~~GsrIIiTTrd~~v-l~~~~~~~~~~v~~l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 295 HRKVLIFIDDLDDQ-----DVLDALAGQTQWFGSGSRIIVITKDKHF-LRAHGIDHIYEVCLPSNELALEMFCRSAF 365 (1153)
T ss_pred CCeEEEEEeCCCCH-----HHHHHHHhhCccCCCCcEEEEEeCcHHH-HHhcCCCeEEEecCCCHHHHHHHHHHHhc
Confidence 35679999999743 335555543321 12359999988532 11110113344555565554444444444
No 247
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=31.01 E-value=50 Score=37.01 Aligned_cols=135 Identities=14% Similarity=0.152 Sum_probs=69.7
Q ss_pred hhhHHHhhCCCcEEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCChh----hHHHHHHHHH-HHHh--
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFPE----DRGFIAGIQQ-IAEK-- 72 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~r-----n~~v~gsl---~~~kkkLILIDEVD~Lfee----DrGf~~AL~~-Liek-- 72 (712)
.+-|+|-+.|-.++-+..||=-++ -..+++-+ ..+++++|+|||||.+... ..-..+.|.. ++-+
T Consensus 182 LAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMq 261 (439)
T KOG0739|consen 182 LAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQ 261 (439)
T ss_pred HHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhh
Confidence 467899999999999999983322 12222111 1257899999999999432 2222233321 2111
Q ss_pred -----cCCcEEEEecCCCCCCcc-cccc--eeeEEcCCCHHHHHHHHHHHHH-HcCCCCCHHHHHHHHHH----cCCcH-
Q 005137 73 -----AKGPVILTSNSNNITLPD-SLDR--LEVSFTMPMPKDLLSHLQMICA-AEKVELQQHLLVQLIES----CRADI- 138 (712)
Q Consensus 73 -----TKrPIILTCND~n~~Lpk-llsr--l~IrFkrPs~~eI~srL~~Ic~-~EGikId~~~L~~LI~~----S~GDI- 138 (712)
..--+||-++++.-.+.. ++.| ..|.+.-|. ..-+.++..|-. .---.+..+.+..|... ++.||
T Consensus 262 GVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe-~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDis 340 (439)
T KOG0739|consen 262 GVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPE-AHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDIS 340 (439)
T ss_pred ccccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCc-HHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceE
Confidence 233477777664322222 2223 234444433 334444444321 11124566777777664 45565
Q ss_pred ---HHHHH
Q 005137 139 ---RKTIM 143 (712)
Q Consensus 139 ---RqaLN 143 (712)
|-+||
T Consensus 341 ivVrDalm 348 (439)
T KOG0739|consen 341 IVVRDALM 348 (439)
T ss_pred EEehhhhh
Confidence 45544
No 248
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=30.29 E-value=1.1e+02 Score=30.40 Aligned_cols=58 Identities=16% Similarity=0.150 Sum_probs=35.2
Q ss_pred CCCcEEEEeCCCCCChh--hHHHHHHHHHHHHhcCCcEEEEecCCCCCCcccccceeeEEcCCCH
Q 005137 42 HVKPLILIEDVDVFFPE--DRGFIAGIQQIAEKAKGPVILTSNSNNITLPDSLDRLEVSFTMPMP 104 (712)
Q Consensus 42 ~kkkLILIDEVD~Lfee--DrGf~~AL~~LiekTKrPIILTCND~n~~Lpkllsrl~IrFkrPs~ 104 (712)
.+++++|+||-..=.+- -+.++..|.++.+. .+.||+++.+... ++. ...+.+.+|+.
T Consensus 144 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~~~-~~~---~~~~~~~~~~~ 203 (207)
T PRK13539 144 SNRPIWILDEPTAALDAAAVALFAELIRAHLAQ-GGIVIAATHIPLG-LPG---ARELDLGPFAA 203 (207)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCchh-hcc---CcEEeecCccC
Confidence 36799999998655432 23344455544433 5679999988653 222 45566666654
No 249
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=28.63 E-value=35 Score=31.41 Aligned_cols=40 Identities=13% Similarity=0.292 Sum_probs=24.3
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCcEEEEecCC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSN 84 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrPIILTCND~ 84 (712)
+-.+||+||+|.+... .+...+..++... ..++|+++..+
T Consensus 129 ~~~~iIiDE~h~~~~~--~~~~~~~~~~~~~~~~~~~v~~saT~ 170 (201)
T smart00487 129 NVDLVILDEAHRLLDG--GFGDQLEKLLKLLPKNVQLLLLSATP 170 (201)
T ss_pred HCCEEEEECHHHHhcC--CcHHHHHHHHHhCCccceEEEEecCC
Confidence 3469999999999863 2334444444432 45566666554
No 250
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=28.30 E-value=32 Score=40.41 Aligned_cols=33 Identities=18% Similarity=0.404 Sum_probs=27.8
Q ss_pred CCCcEEEEeCCCCCChhhHHHHHHHHHHHHhcCCc
Q 005137 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGP 76 (712)
Q Consensus 42 ~kkkLILIDEVD~LfeeDrGf~~AL~~LiekTKrP 76 (712)
.+=+.+++||||.|++ .||-..|+.|+..+.+|
T Consensus 238 ~~v~ylVLDEADrMld--mGFe~qI~~Il~~i~~~ 270 (519)
T KOG0331|consen 238 SRVTYLVLDEADRMLD--MGFEPQIRKILSQIPRP 270 (519)
T ss_pred cceeEEEeccHHhhhc--cccHHHHHHHHHhcCCC
Confidence 3457899999999985 68999999999998544
No 251
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=27.34 E-value=96 Score=33.87 Aligned_cols=40 Identities=20% Similarity=0.323 Sum_probs=26.3
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHh---------------cCCcEEEEecCCC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK---------------AKGPVILTSNSNN 85 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~Liek---------------TKrPIILTCND~n 85 (712)
.+.++.|||.|.|.++|+ .+|.+.|++ +++.|+.+||-..
T Consensus 121 d~GiccIDe~dk~~~~~~---~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~ 175 (331)
T PF00493_consen 121 DGGICCIDEFDKMKEDDR---DALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKF 175 (331)
T ss_dssp TTSEEEECTTTT--CHHH---HHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT
T ss_pred cCceeeecccccccchHH---HHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhh
Confidence 568999999999988876 466667774 4677999998753
No 252
>PRK06526 transposase; Provisional
Probab=27.15 E-value=1e+02 Score=32.61 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=27.0
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSN 84 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~ 84 (712)
+..||||||++.+... +.....+.+++.. -+.++|+|+|-.
T Consensus 159 ~~dlLIIDD~g~~~~~-~~~~~~L~~li~~r~~~~s~IitSn~~ 201 (254)
T PRK06526 159 RYPLLIVDEVGYIPFE-PEAANLFFQLVSSRYERASLIVTSNKP 201 (254)
T ss_pred cCCEEEEcccccCCCC-HHHHHHHHHHHHHHHhcCCEEEEcCCC
Confidence 3579999999987532 2223445555532 346899999985
No 253
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=26.85 E-value=90 Score=39.82 Aligned_cols=42 Identities=21% Similarity=0.312 Sum_probs=36.2
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhcCCcEEEEecCC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSN 84 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekTKrPIILTCND~ 84 (712)
..++|||||||..-..+.+++..+.+++....+|||+.+-..
T Consensus 593 a~svlVlDEVHaYD~~~~~~L~rlL~w~~~lG~~VlLmSATL 634 (1110)
T TIGR02562 593 MSSDLILDEPDDYEPEDLPALLRLVQLAGLLGSRVLLSSATL 634 (1110)
T ss_pred cCCCEEEECCccCCHHHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 478999999999988899999888888888889998877553
No 254
>PRK09694 helicase Cas3; Provisional
Probab=25.55 E-value=93 Score=38.82 Aligned_cols=42 Identities=19% Similarity=0.385 Sum_probs=30.0
Q ss_pred CCCcEEEEeCCCCCChhhHHHHHHHHHHHHhcCCcEEEEecC
Q 005137 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNS 83 (712)
Q Consensus 42 ~kkkLILIDEVD~LfeeDrGf~~AL~~LiekTKrPIILTCND 83 (712)
..+++||||||+..-..-.+.+.++.+.+.....|+|+.+=.
T Consensus 438 La~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSAT 479 (878)
T PRK09694 438 LGRSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSAT 479 (878)
T ss_pred hccCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 357899999999995544456666666666667788777644
No 255
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=24.95 E-value=97 Score=35.34 Aligned_cols=91 Identities=14% Similarity=0.280 Sum_probs=59.9
Q ss_pred CCcEEEEeCCCCCChh---------hHHHHHHHHHHHHhcCC----------cEEEEecCC------CCCCcccccce--
Q 005137 43 VKPLILIEDVDVFFPE---------DRGFIAGIQQIAEKAKG----------PVILTSNSN------NITLPDSLDRL-- 95 (712)
Q Consensus 43 kkkLILIDEVD~Lfee---------DrGf~~AL~~LiekTKr----------PIILTCND~------n~~Lpkllsrl-- 95 (712)
...+|+|||+|.+... -.|-++.|..+++-|.+ -|.||+.-- +-.+|.+-.|+
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPI 329 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPI 329 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCce
Confidence 4589999999988331 23456788888875321 277777542 22355555564
Q ss_pred eeEEcCCCHHHHHHHHH-----------HHHHHcCCC--CCHHHHHHHHHH
Q 005137 96 EVSFTMPMPKDLLSHLQ-----------MICAAEKVE--LQQHLLVQLIES 133 (712)
Q Consensus 96 ~IrFkrPs~~eI~srL~-----------~Ic~~EGik--Id~~~L~~LI~~ 133 (712)
.+.++..+.+.+...|. ...+.||+. +++++|+.|++.
T Consensus 330 RVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAei 380 (444)
T COG1220 330 RVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEI 380 (444)
T ss_pred EEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHH
Confidence 45667777766665553 446789986 579999999875
No 256
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=24.92 E-value=1.2e+02 Score=30.09 Aligned_cols=39 Identities=15% Similarity=0.424 Sum_probs=24.7
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhcC--CcEEEEecC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKAK--GPVILTSNS 83 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekTK--rPIILTCND 83 (712)
...++||||||.=.++.+ +..+..+++... +-+|+|+-+
T Consensus 158 ~~p~~ilDEvd~~LD~~~--~~~l~~~l~~~~~~~Q~ii~Th~ 198 (220)
T PF02463_consen 158 PSPFLILDEVDAALDEQN--RKRLADLLKELSKQSQFIITTHN 198 (220)
T ss_dssp --SEEEEESTTTTS-HHH--HHHHHHHHHHHTTTSEEEEE-S-
T ss_pred cccccccccccccccccc--ccccccccccccccccccccccc
Confidence 467999999999887643 455666665544 678888866
No 257
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=24.79 E-value=4.3e+02 Score=31.67 Aligned_cols=101 Identities=11% Similarity=0.123 Sum_probs=62.3
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhc-------------CCcEEEEecCCC----CCCcc-cccc--eeeEEcCC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSNN----ITLPD-SLDR--LEVSFTMP 102 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekT-------------KrPIILTCND~n----~~Lpk-llsr--l~IrFkrP 102 (712)
.+.++++||+-.+. ...+.+|.+-++.. -.||++++.+.. ..++. +++| +.|.+..|
T Consensus 93 h~GvL~lDe~n~~~---~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~ 169 (584)
T PRK13406 93 DGGVLVLAMAERLE---PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGL 169 (584)
T ss_pred cCCEEEecCcccCC---HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCC
Confidence 36899999998884 45778888888753 257889986421 12443 6788 56667766
Q ss_pred CHHHHH------HHHHHHH-HHcCCCCCHHHHHHHHHHc---CC-cHHHHHHHHH
Q 005137 103 MPKDLL------SHLQMIC-AAEKVELQQHLLVQLIESC---RA-DIRKTIMHLQ 146 (712)
Q Consensus 103 s~~eI~------srL~~Ic-~~EGikId~~~L~~LI~~S---~G-DIRqaLN~LQ 146 (712)
+..+.. .++...- .-.++.+++..+..++..+ +- =.|..+-.+.
T Consensus 170 ~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llr 224 (584)
T PRK13406 170 ALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALR 224 (584)
T ss_pred ChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHH
Confidence 654332 1222111 1147899999999887642 21 2355555444
No 258
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=24.21 E-value=69 Score=31.08 Aligned_cols=39 Identities=18% Similarity=0.323 Sum_probs=25.0
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCcEEEEecC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNS 83 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrPIILTCND 83 (712)
.-.+||+||+|.+.+ .++...+..+++.. .+++++.+-.
T Consensus 143 ~l~~lIvDE~h~~~~--~~~~~~~~~~~~~l~~~~~~~~~SAT 183 (203)
T cd00268 143 KVKYLVLDEADRMLD--MGFEDQIREILKLLPKDRQTLLFSAT 183 (203)
T ss_pred hCCEEEEeChHHhhc--cChHHHHHHHHHhCCcccEEEEEecc
Confidence 347999999999973 44555665555543 3455555544
No 259
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=23.98 E-value=1.6e+02 Score=29.40 Aligned_cols=44 Identities=9% Similarity=0.287 Sum_probs=29.9
Q ss_pred CCCcEEEEeCCCCCChh--hHHHHHHHHHHHHhcCCcEEEEecCCC
Q 005137 42 HVKPLILIEDVDVFFPE--DRGFIAGIQQIAEKAKGPVILTSNSNN 85 (712)
Q Consensus 42 ~kkkLILIDEVD~Lfee--DrGf~~AL~~LiekTKrPIILTCND~n 85 (712)
.+++++|+||...-.+. .+.+...|.++.+...+.||+++.+..
T Consensus 145 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~ 190 (213)
T TIGR01277 145 RPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS 190 (213)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 36799999998776543 334455555555544567899988854
No 260
>PRK06921 hypothetical protein; Provisional
Probab=23.90 E-value=1.3e+02 Score=31.84 Aligned_cols=73 Identities=14% Similarity=0.124 Sum_probs=39.3
Q ss_pred hhHHHhhC----CCcEEEEeCCCcccc--ccc--ccccCC-CCCCcEEEEeCCCC-------CChhhHHHHHHHHHHHHh
Q 005137 9 LCEAAQHA----DDEVVEVIHIPDDEN--SHG--VMGKSD-NHVKPLILIEDVDV-------FFPEDRGFIAGIQQIAEK 72 (712)
Q Consensus 9 ~~aIAkel----GydVIELNASDdR~r--n~~--v~gsl~-~~kkkLILIDEVD~-------LfeeDrGf~~AL~~Liek 72 (712)
++++|+++ |+.|+-+.+.+-... ..+ ....+. -..-.||||||++. +++-. ...|-.+++.
T Consensus 134 a~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~~~~~g~e~~t~~~---~~~lf~iin~ 210 (266)
T PRK06921 134 LTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLFKPVNGKPRATEWQ---IEQMYSVLNY 210 (266)
T ss_pred HHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccccccCCCccCCHHH---HHHHHHHHHH
Confidence 45555553 888998888662211 000 000000 12458999999943 11111 2344444443
Q ss_pred ---cCCcEEEEecCC
Q 005137 73 ---AKGPVILTSNSN 84 (712)
Q Consensus 73 ---TKrPIILTCND~ 84 (712)
.+.|+|+|+|-.
T Consensus 211 R~~~~k~tIitsn~~ 225 (266)
T PRK06921 211 RYLNHKPILISSELT 225 (266)
T ss_pred HHHCCCCEEEECCCC
Confidence 367999999974
No 261
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=23.21 E-value=1.7e+02 Score=28.97 Aligned_cols=44 Identities=7% Similarity=0.126 Sum_probs=29.1
Q ss_pred CCCcEEEEeCCCCCChh--hHHHHHHHHHHHHhcCCcEEEEecCCC
Q 005137 42 HVKPLILIEDVDVFFPE--DRGFIAGIQQIAEKAKGPVILTSNSNN 85 (712)
Q Consensus 42 ~kkkLILIDEVD~Lfee--DrGf~~AL~~LiekTKrPIILTCND~n 85 (712)
.+++++|+||--.-.+. -+.++..|.++.++..+.||+++.+..
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~ 192 (213)
T cd03301 147 REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV 192 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 36789999998666543 223444555555444568999998854
No 262
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=23.05 E-value=1.1e+02 Score=24.49 Aligned_cols=23 Identities=17% Similarity=0.546 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHcCCcHHHHHHHH
Q 005137 123 QQHLLVQLIESCRADIRKTIMHL 145 (712)
Q Consensus 123 d~~~L~~LI~~S~GDIRqaLN~L 145 (712)
....|+.+.+.|+||+=++|-++
T Consensus 16 kr~~Le~iL~~C~GDvv~AIE~~ 38 (39)
T PF03474_consen 16 KRSVLELILQRCNGDVVQAIEQF 38 (39)
T ss_pred ChHHHHHHHHHcCCcHHHHHHHh
Confidence 46899999999999999998653
No 263
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=22.47 E-value=1.8e+02 Score=28.84 Aligned_cols=54 Identities=17% Similarity=0.374 Sum_probs=33.9
Q ss_pred CCcEEEEeCCCCCChh--hHHHHHHHHHHHHhcCCcEEEEecCCCCCCcccccc-eeeEE
Q 005137 43 VKPLILIEDVDVFFPE--DRGFIAGIQQIAEKAKGPVILTSNSNNITLPDSLDR-LEVSF 99 (712)
Q Consensus 43 kkkLILIDEVD~Lfee--DrGf~~AL~~LiekTKrPIILTCND~n~~Lpkllsr-l~IrF 99 (712)
+++++|+||.+.-.+. .+.+...|.++.+. .+.||++..+.. .....++ ..|.+
T Consensus 116 ~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~-g~tiIiiSH~~~--~~~~adrvi~i~~ 172 (178)
T cd03239 116 PSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH-TSQFIVITLKKE--MFENADKLIGVLF 172 (178)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEECCHH--HHhhCCeEEEEEE
Confidence 5799999999987664 34455566655443 356888888753 2233444 44444
No 264
>PRK04841 transcriptional regulator MalT; Provisional
Probab=22.29 E-value=4.1e+02 Score=32.09 Aligned_cols=95 Identities=6% Similarity=0.011 Sum_probs=59.0
Q ss_pred CCCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCcEEEEecCCCC-CCcccccc-eeeEEc----CCCHHHHHHHHHH
Q 005137 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNNI-TLPDSLDR-LEVSFT----MPMPKDLLSHLQM 113 (712)
Q Consensus 42 ~kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrPIILTCND~n~-~Lpkllsr-l~IrFk----rPs~~eI~srL~~ 113 (712)
..+-+|+|||++-+.+ ......|..+++.. ..-+|+++....+ ++.++.-+ ..+++. +.+.+++...+..
T Consensus 120 ~~~~~lvlDD~h~~~~--~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~ 197 (903)
T PRK04841 120 HQPLYLVIDDYHLITN--PEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQ 197 (903)
T ss_pred CCCEEEEEeCcCcCCC--hHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHh
Confidence 3567899999999843 33344666666653 2335566544211 12222211 223333 6677888776653
Q ss_pred HHHHcCCCCCHHHHHHHHHHcCCcHHHH
Q 005137 114 ICAAEKVELQQHLLVQLIESCRADIRKT 141 (712)
Q Consensus 114 Ic~~EGikId~~~L~~LI~~S~GDIRqa 141 (712)
.-|..+++..+..|.+.+.|-.--.
T Consensus 198 ---~~~~~~~~~~~~~l~~~t~Gwp~~l 222 (903)
T PRK04841 198 ---RLSSPIEAAESSRLCDDVEGWATAL 222 (903)
T ss_pred ---ccCCCCCHHHHHHHHHHhCChHHHH
Confidence 3477899999999999999987543
No 265
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.82 E-value=1.8e+02 Score=29.38 Aligned_cols=52 Identities=6% Similarity=0.105 Sum_probs=32.9
Q ss_pred CCCcEEEEeCCCCCChh--hHHHHHHHHHHHHhcCCcEEEEecCCCCCCcccccc
Q 005137 42 HVKPLILIEDVDVFFPE--DRGFIAGIQQIAEKAKGPVILTSNSNNITLPDSLDR 94 (712)
Q Consensus 42 ~kkkLILIDEVD~Lfee--DrGf~~AL~~LiekTKrPIILTCND~n~~Lpkllsr 94 (712)
.+++++|+||...=.+. -+.++..|.++.++..+-||+++.+... ++...++
T Consensus 147 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~-~~~~~d~ 200 (232)
T cd03300 147 NEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEE-ALTMSDR 200 (232)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhcCE
Confidence 36799999999776554 3345555566555435678888888642 3333444
No 266
>PRK09183 transposase/IS protein; Provisional
Probab=21.41 E-value=83 Score=33.15 Aligned_cols=74 Identities=19% Similarity=0.037 Sum_probs=40.0
Q ss_pred hHHHhhCCCcEEEEeCCCcccc------cccccccCC--CCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEE
Q 005137 10 CEAAQHADDEVVEVIHIPDDEN------SHGVMGKSD--NHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVIL 79 (712)
Q Consensus 10 ~aIAkelGydVIELNASDdR~r------n~~v~gsl~--~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIIL 79 (712)
+..|...|+.|.-+++.+-... .......+. -....++||||++.+...+ .....+-+++.. -+.++|+
T Consensus 123 ~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~~~~~-~~~~~lf~li~~r~~~~s~ii 201 (259)
T PRK09183 123 GYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQ-EEANLFFQVIAKRYEKGSMIL 201 (259)
T ss_pred HHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccCCCCh-HHHHHHHHHHHHHHhcCcEEE
Confidence 3345567999999887662110 000000010 1245799999998763322 222334444432 2458999
Q ss_pred EecCC
Q 005137 80 TSNSN 84 (712)
Q Consensus 80 TCND~ 84 (712)
|+|-.
T Consensus 202 Tsn~~ 206 (259)
T PRK09183 202 TSNLP 206 (259)
T ss_pred ecCCC
Confidence 99884
No 267
>KOG4458 consensus Nitric oxide synthase-binding protein, contains PTB domain [Signal transduction mechanisms]
Probab=20.86 E-value=45 Score=29.39 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=12.8
Q ss_pred hhhcceeeeecccccC
Q 005137 580 VQHGFSIYAKDISNKG 595 (712)
Q Consensus 580 aqh~fc~~ak~~~~~g 595 (712)
-|||.||=||..-..+
T Consensus 30 ~qhgi~feakyvgsld 45 (78)
T KOG4458|consen 30 FQHGICFEAKYVGSLD 45 (78)
T ss_pred hhccceEeeeeeeeec
Confidence 3899999999876544
No 268
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=20.40 E-value=1.6e+02 Score=22.64 Aligned_cols=25 Identities=16% Similarity=0.414 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHHHcCCcHHHHHHHH
Q 005137 121 ELQQHLLVQLIESCRADIRKTIMHL 145 (712)
Q Consensus 121 kId~~~L~~LI~~S~GDIRqaLN~L 145 (712)
.++++.|......++||+-.+++.|
T Consensus 14 ~~~~~~I~~~L~~~~~~ve~ai~~L 38 (42)
T PF02845_consen 14 DLDREVIEAVLQANNGDVEAAIDAL 38 (42)
T ss_dssp SS-HHHHHHHHHHTTTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4789999999999999999999876
No 269
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=20.14 E-value=2.9e+02 Score=32.00 Aligned_cols=101 Identities=18% Similarity=0.312 Sum_probs=64.0
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhc-------------CCcEEEE--ecCCC-CCCcccccc--eeeEEcCCCH
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILT--SNSNN-ITLPDSLDR--LEVSFTMPMP 104 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekT-------------KrPIILT--CND~n-~~Lpkllsr--l~IrFkrPs~ 104 (712)
-..++.+|||--|-+ ..+.+|...+... ...+||+ .|--. ...|.+++| ..|....|
T Consensus 144 nRGIlYvDEvnlL~d---~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~-- 218 (423)
T COG1239 144 NRGILYVDEVNLLDD---HLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYP-- 218 (423)
T ss_pred cCCEEEEeccccccH---HHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCC--
Confidence 368999999998854 3666777776652 1224444 45432 345678899 45555444
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHH-HHHHHHHHH
Q 005137 105 KDLLSHLQMICAAEKVELQQHLLVQLIESCRADIR-KTIMHLQFW 148 (712)
Q Consensus 105 ~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIR-qaLN~LQf~ 148 (712)
..+..++.-|-..+.+..+|+...+.+......+| ++++..+..
T Consensus 219 ~~~~~rv~Ii~r~~~f~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l 263 (423)
T COG1239 219 LDLEERVEIIRRRLAFEAVPEAFLEKYADAQRALRARIIAARSLL 263 (423)
T ss_pred CCHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45555666666666566777777777777778888 555544443
Done!