Query 005137
Match_columns 712
No_of_seqs 188 out of 1195
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 16:30:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005137.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005137hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sxj_A Activator 1 95 kDa subu 99.7 2.6E-17 8.8E-22 180.2 12.3 202 8-210 93-328 (516)
2 3u61_B DNA polymerase accessor 99.4 1.8E-12 6.2E-17 131.4 11.4 138 8-149 64-220 (324)
3 1sxj_E Activator 1 40 kDa subu 99.1 1.8E-10 6.2E-15 117.4 11.5 107 43-152 134-244 (354)
4 2chq_A Replication factor C sm 99.1 7.9E-11 2.7E-15 117.0 7.8 141 9-152 55-211 (319)
5 1sxj_B Activator 1 37 kDa subu 99.1 4E-10 1.4E-14 112.1 10.5 132 17-151 72-215 (323)
6 1sxj_C Activator 1 40 kDa subu 99.1 3.1E-10 1E-14 116.7 9.4 141 9-152 63-219 (340)
7 1iqp_A RFCS; clamp loader, ext 99.0 6.1E-10 2.1E-14 111.0 10.1 140 10-152 64-219 (327)
8 1sxj_D Activator 1 41 kDa subu 99.0 2.2E-09 7.4E-14 108.7 11.7 106 43-151 133-241 (353)
9 2chg_A Replication factor C sm 98.9 1.1E-08 3.6E-13 94.7 12.9 133 17-152 68-211 (226)
10 1jr3_A DNA polymerase III subu 98.8 4.5E-08 1.5E-12 99.7 13.3 129 18-150 88-226 (373)
11 1jr3_D DNA polymerase III, del 98.8 1.2E-08 4.2E-13 104.7 8.7 128 19-150 51-190 (343)
12 2gno_A DNA polymerase III, gam 98.7 1.7E-08 5.9E-13 104.5 7.4 117 17-147 49-175 (305)
13 3bos_A Putative DNA replicatio 98.7 2.5E-07 8.7E-12 87.5 13.5 132 17-150 80-222 (242)
14 1njg_A DNA polymerase III subu 98.6 1.5E-07 5.1E-12 87.5 11.3 105 43-150 126-233 (250)
15 1a5t_A Delta prime, HOLB; zinc 98.6 7.8E-08 2.7E-12 99.5 9.3 122 18-148 74-208 (334)
16 3pvs_A Replication-associated 98.6 1E-07 3.5E-12 103.7 9.4 142 8-152 66-222 (447)
17 3pfi_A Holliday junction ATP-d 98.5 3.9E-07 1.3E-11 92.6 12.0 137 8-148 71-230 (338)
18 1hqc_A RUVB; extended AAA-ATPa 98.5 2.2E-06 7.4E-11 86.1 14.7 139 8-150 54-216 (324)
19 3uk6_A RUVB-like 2; hexameric 98.5 4.9E-07 1.7E-11 92.6 10.2 104 44-150 190-308 (368)
20 3vfd_A Spastin; ATPase, microt 98.3 1.4E-06 4.6E-11 91.7 9.7 142 8-149 164-329 (389)
21 2c9o_A RUVB-like 1; hexameric 98.3 1.5E-06 5.2E-11 93.7 8.6 101 45-148 297-413 (456)
22 3syl_A Protein CBBX; photosynt 98.2 1.3E-06 4.4E-11 87.4 6.1 142 9-150 84-260 (309)
23 2qby_B CDC6 homolog 3, cell di 98.2 7.7E-07 2.6E-11 91.0 4.5 103 46-150 136-250 (384)
24 1ofh_A ATP-dependent HSL prote 98.1 6.7E-06 2.3E-10 81.4 9.8 142 8-149 66-270 (310)
25 1fnn_A CDC6P, cell division co 98.1 1.1E-05 3.9E-10 82.2 10.3 105 43-150 125-252 (389)
26 2v1u_A Cell division control p 98.0 6.2E-06 2.1E-10 83.6 6.6 108 43-150 130-254 (387)
27 3b9p_A CG5977-PA, isoform A; A 98.0 2E-05 6.7E-10 78.7 9.3 138 8-145 70-232 (297)
28 1l8q_A Chromosomal replication 97.9 4.4E-05 1.5E-09 77.5 11.8 140 9-151 54-214 (324)
29 2qp9_X Vacuolar protein sortin 97.9 8.6E-06 2.9E-10 85.3 6.4 145 7-151 99-270 (355)
30 2z4s_A Chromosomal replication 97.9 2.5E-05 8.5E-10 84.4 9.7 140 9-150 147-311 (440)
31 3d8b_A Fidgetin-like protein 1 97.9 1.3E-05 4.5E-10 83.7 7.3 137 8-144 133-297 (357)
32 3te6_A Regulatory protein SIR3 97.7 6.8E-05 2.3E-09 78.8 9.3 106 43-150 132-284 (318)
33 3h4m_A Proteasome-activating n 97.7 3.9E-05 1.3E-09 75.9 6.6 145 8-153 67-242 (285)
34 3eie_A Vacuolar protein sortin 97.7 1.8E-05 6E-10 81.2 3.9 143 7-149 66-235 (322)
35 2qby_A CDC6 homolog 1, cell di 97.6 4.7E-05 1.6E-09 76.9 6.0 107 43-149 128-249 (386)
36 2qz4_A Paraplegin; AAA+, SPG7, 97.6 0.00022 7.5E-09 69.2 10.1 143 8-150 55-230 (262)
37 2zan_A Vacuolar protein sortin 97.6 8E-05 2.7E-09 80.4 7.2 144 7-150 182-353 (444)
38 1xwi_A SKD1 protein; VPS4B, AA 97.6 0.00022 7.4E-09 73.7 10.0 143 7-149 60-230 (322)
39 1d2n_A N-ethylmaleimide-sensit 97.5 5.1E-05 1.7E-09 75.2 4.1 139 8-151 80-248 (272)
40 1r6b_X CLPA protein; AAA+, N-t 97.3 0.00029 9.8E-09 80.2 7.1 139 8-149 504-712 (758)
41 1in4_A RUVB, holliday junction 97.2 0.0016 5.4E-08 67.3 11.7 137 8-148 67-226 (334)
42 3t15_A Ribulose bisphosphate c 97.2 0.00044 1.5E-08 70.4 7.3 131 7-139 51-221 (293)
43 4fcw_A Chaperone protein CLPB; 97.1 0.00047 1.6E-08 68.7 6.1 105 43-150 119-276 (311)
44 1um8_A ATP-dependent CLP prote 97.1 0.00065 2.2E-08 70.7 7.2 144 8-151 88-338 (376)
45 2bjv_A PSP operon transcriptio 97.1 0.0025 8.5E-08 62.7 10.4 140 8-150 45-238 (265)
46 1g8p_A Magnesium-chelatase 38 97.0 0.0024 8.3E-08 64.5 9.6 102 44-148 145-298 (350)
47 4b4t_J 26S protease regulatory 96.9 0.004 1.4E-07 67.7 11.7 143 7-151 197-371 (405)
48 4b4t_L 26S protease subunit RP 96.9 0.0044 1.5E-07 67.9 12.1 144 7-151 230-404 (437)
49 3m6a_A ATP-dependent protease 96.9 0.0013 4.6E-08 72.9 7.6 143 8-150 124-313 (543)
50 3cf0_A Transitional endoplasmi 96.8 0.00031 1.1E-08 71.4 1.9 145 7-151 64-238 (301)
51 1ojl_A Transcriptional regulat 96.7 0.0081 2.8E-07 61.6 11.3 140 9-151 42-234 (304)
52 3pxi_A Negative regulator of g 96.7 0.0038 1.3E-07 71.4 9.4 136 8-146 537-718 (758)
53 4b4t_M 26S protease regulatory 96.6 0.0076 2.6E-07 66.0 10.6 142 7-150 230-403 (434)
54 4b4t_I 26S protease regulatory 96.6 0.0085 2.9E-07 65.9 10.7 143 7-151 231-405 (437)
55 1w5s_A Origin recognition comp 96.6 0.0025 8.4E-08 65.6 6.1 106 43-148 138-269 (412)
56 2r44_A Uncharacterized protein 96.5 0.017 6E-07 58.5 12.2 135 8-148 62-273 (331)
57 4b4t_H 26S protease regulatory 96.5 0.0091 3.1E-07 66.1 10.8 142 7-150 258-431 (467)
58 1lv7_A FTSH; alpha/beta domain 96.5 0.0041 1.4E-07 60.9 7.2 142 8-151 61-234 (257)
59 2r62_A Cell division protease 96.4 0.00031 1.1E-08 69.0 -1.5 143 8-151 60-235 (268)
60 3hws_A ATP-dependent CLP prote 96.2 0.0032 1.1E-07 65.3 4.5 143 8-150 67-320 (363)
61 4b4t_K 26S protease regulatory 96.2 0.013 4.4E-07 64.0 9.2 142 7-150 221-395 (428)
62 1qvr_A CLPB protein; coiled co 96.0 0.0039 1.3E-07 72.5 4.7 140 8-150 604-817 (854)
63 3hu3_A Transitional endoplasmi 95.9 0.0032 1.1E-07 69.4 3.1 143 7-150 253-423 (489)
64 3cf2_A TER ATPase, transitiona 95.7 0.009 3.1E-07 70.0 5.9 139 7-148 253-421 (806)
65 1qvr_A CLPB protein; coiled co 95.6 0.018 6.3E-07 66.9 7.9 133 17-149 226-389 (854)
66 2ce7_A Cell division protein F 95.5 0.023 7.8E-07 62.7 8.1 143 7-151 64-238 (476)
67 2qen_A Walker-type ATPase; unk 95.2 0.13 4.5E-06 51.2 11.6 98 44-141 129-242 (350)
68 1jbk_A CLPB protein; beta barr 94.9 0.0059 2E-07 54.7 0.6 69 43-111 115-194 (195)
69 3dzd_A Transcriptional regulat 94.5 0.33 1.1E-05 51.2 13.0 106 43-151 222-360 (368)
70 1u0j_A DNA replication protein 94.3 0.05 1.7E-06 56.2 6.1 104 8-124 120-259 (267)
71 1r6b_X CLPA protein; AAA+, N-t 94.1 0.07 2.4E-06 60.8 7.4 94 43-136 278-387 (758)
72 2dhr_A FTSH; AAA+ protein, hex 93.5 0.19 6.3E-06 55.9 9.1 142 7-150 79-252 (499)
73 3pxg_A Negative regulator of g 92.9 0.045 1.5E-06 59.5 3.0 126 17-149 236-382 (468)
74 1ny5_A Transcriptional regulat 92.4 0.67 2.3E-05 49.1 11.1 105 44-151 232-369 (387)
75 3k1j_A LON protease, ATP-depen 92.2 0.1 3.4E-06 58.5 4.6 103 43-148 201-351 (604)
76 1ixz_A ATP-dependent metallopr 91.0 0.65 2.2E-05 45.1 8.5 142 8-151 65-238 (254)
77 2kjq_A DNAA-related protein; s 90.4 0.57 1.9E-05 43.2 7.0 60 17-84 64-125 (149)
78 2p65_A Hypothetical protein PF 89.9 0.085 2.9E-06 47.4 1.1 61 43-103 115-187 (187)
79 2fna_A Conserved hypothetical 89.8 1.1 3.9E-05 44.4 9.2 99 44-144 138-249 (357)
80 1iy2_A ATP-dependent metallopr 88.9 1 3.5E-05 44.6 8.1 141 8-150 89-261 (278)
81 1tue_A Replication protein E1; 88.0 0.4 1.4E-05 48.2 4.4 82 10-103 76-180 (212)
82 3pxi_A Negative regulator of g 87.7 0.31 1.1E-05 55.7 3.9 133 9-148 218-381 (758)
83 1ypw_A Transitional endoplasmi 87.4 0.38 1.3E-05 56.1 4.4 133 8-141 254-410 (806)
84 3co5_A Putative two-component 86.6 0.29 1E-05 44.2 2.3 70 9-84 44-116 (143)
85 3cf2_A TER ATPase, transitiona 85.6 0.11 3.9E-06 60.8 -1.1 145 7-151 526-700 (806)
86 3nbx_X ATPase RAVA; AAA+ ATPas 85.2 2.5 8.5E-05 46.9 9.3 100 44-146 110-260 (500)
87 1ye8_A Protein THEP1, hypothet 84.2 0.88 3E-05 43.2 4.5 70 43-112 99-173 (178)
88 1g41_A Heat shock protein HSLU 83.6 3.4 0.00011 45.4 9.3 106 44-150 251-405 (444)
89 1ypw_A Transitional endoplasmi 83.5 0.0056 1.9E-07 71.2 -13.2 145 8-153 527-702 (806)
90 2x8a_A Nuclear valosin-contain 78.6 1.4 4.7E-05 44.5 3.8 141 8-150 60-234 (274)
91 3ec2_A DNA replication protein 78.6 3.3 0.00011 38.0 6.1 42 43-85 100-144 (180)
92 3n70_A Transport activator; si 77.1 1.5 5.2E-05 39.4 3.3 72 8-84 40-116 (145)
93 3f9v_A Minichromosome maintena 72.6 5.8 0.0002 44.6 7.2 86 44-132 392-512 (595)
94 2i3b_A HCR-ntpase, human cance 62.5 5.5 0.00019 38.2 3.8 69 42-111 104-180 (189)
95 3f8t_A Predicted ATPase involv 53.1 48 0.0016 37.3 9.7 89 43-134 300-427 (506)
96 4akg_A Glutathione S-transfera 50.4 43 0.0015 44.6 10.0 107 10-116 1286-1432(2695)
97 2lhb_A Hemoglobin V (cyano Met 50.2 12 0.00042 34.1 3.8 59 470-538 1-86 (149)
98 2qgz_A Helicase loader, putati 47.4 9.7 0.00033 39.0 2.9 70 15-84 179-258 (308)
99 2w58_A DNAI, primosome compone 45.1 16 0.00056 33.7 3.8 41 44-84 116-159 (202)
100 2cvh_A DNA repair and recombin 44.2 26 0.00089 32.4 5.1 42 43-84 105-156 (220)
101 2w0m_A SSO2452; RECA, SSPF, un 42.2 21 0.00072 33.0 4.1 42 43-84 121-168 (235)
102 1vec_A ATP-dependent RNA helic 41.7 8.3 0.00028 35.6 1.2 39 43-83 146-186 (206)
103 1t6n_A Probable ATP-dependent 40.9 10 0.00035 35.5 1.8 41 43-84 158-200 (220)
104 3nhm_A Response regulator; pro 40.7 1.1E+02 0.0039 25.2 8.2 74 43-120 47-125 (133)
105 3dkp_A Probable ATP-dependent 37.7 8.6 0.00029 36.8 0.7 39 43-81 175-217 (245)
106 1nlf_A Regulatory protein REPA 33.4 34 0.0012 33.7 4.2 42 43-84 133-181 (279)
107 3bor_A Human initiation factor 33.3 9.5 0.00033 36.6 0.2 39 43-83 173-213 (237)
108 3n53_A Response regulator rece 30.7 1.6E+02 0.0054 24.7 7.5 72 43-118 46-123 (140)
109 3cg4_A Response regulator rece 29.3 2.3E+02 0.008 23.5 8.4 70 43-116 51-126 (142)
110 3b6e_A Interferon-induced heli 29.2 27 0.00092 32.0 2.5 22 43-66 162-183 (216)
111 1cr0_A DNA primase/helicase; R 29.1 48 0.0016 32.8 4.5 42 43-84 147-197 (296)
112 2dr3_A UPF0273 protein PH0284; 29.1 56 0.0019 30.6 4.8 42 43-84 128-173 (247)
113 1wgl_A TOLL-interacting protei 28.4 41 0.0014 27.3 3.1 28 121-148 22-49 (59)
114 3lua_A Response regulator rece 27.0 1.7E+02 0.0059 24.5 7.1 96 14-118 26-128 (140)
115 3kto_A Response regulator rece 26.9 2.4E+02 0.0082 23.6 8.0 98 14-119 27-128 (136)
116 3llm_A ATP-dependent RNA helic 26.8 77 0.0026 30.3 5.3 40 43-83 176-217 (235)
117 2gxq_A Heat resistant RNA depe 26.6 14 0.00048 34.0 0.1 39 43-83 144-184 (207)
118 1x9f_D Globin C, hemoglobin ch 26.6 52 0.0018 29.5 3.9 47 493-539 5-76 (140)
119 3iuy_A Probable ATP-dependent 25.9 16 0.00055 34.5 0.3 37 43-81 167-205 (228)
120 1q0u_A Bstdead; DEAD protein, 25.8 15 0.00052 34.5 0.2 40 43-84 150-191 (219)
121 2pl3_A Probable ATP-dependent 24.9 15 0.00051 34.9 -0.1 39 43-83 171-211 (236)
122 1sct_A Hemoglobin II (carbonmo 24.9 50 0.0017 30.0 3.4 49 491-539 12-84 (150)
123 1wrb_A DJVLGB; RNA helicase, D 23.8 20 0.00067 34.5 0.5 28 43-72 174-201 (253)
124 1mvo_A PHOP response regulator 23.2 2.3E+02 0.0079 23.4 7.1 74 43-120 47-124 (136)
125 3ber_A Probable ATP-dependent 23.2 18 0.00061 35.3 0.1 37 43-81 186-224 (249)
126 3h5i_A Response regulator/sens 22.5 2.3E+02 0.0079 23.8 7.1 72 42-116 49-123 (140)
127 1qde_A EIF4A, translation init 22.2 23 0.00078 33.2 0.6 39 43-83 155-195 (224)
128 2orw_A Thymidine kinase; TMTK, 22.0 61 0.0021 30.5 3.5 39 43-85 76-114 (184)
129 2c0k_A Hemoglobin; oxygen tran 21.8 50 0.0017 30.1 2.8 49 493-541 4-78 (151)
130 3ly5_A ATP-dependent RNA helic 21.5 21 0.0007 35.1 0.1 37 43-81 201-239 (262)
131 4dad_A Putative pilus assembly 21.4 2.6E+02 0.0089 23.5 7.2 72 43-118 67-142 (146)
132 2whx_A Serine protease/ntpase/ 21.2 94 0.0032 35.1 5.4 39 43-84 277-318 (618)
133 1n0w_A DNA repair protein RAD5 21.2 73 0.0025 29.8 3.9 41 43-83 119-173 (243)
134 1x9f_B Erythrocruorin, globin 21.1 76 0.0026 28.6 3.9 47 493-539 7-78 (145)
135 2v6i_A RNA helicase; membrane, 20.8 1.1E+02 0.0036 32.6 5.4 41 43-83 93-133 (431)
136 3f6p_A Transcriptional regulat 20.6 1.2E+02 0.0039 25.1 4.6 93 14-116 23-118 (120)
137 2r6a_A DNAB helicase, replicat 20.0 93 0.0032 33.3 4.8 40 43-82 313-362 (454)
No 1
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.71 E-value=2.6e-17 Score=180.16 Aligned_cols=202 Identities=22% Similarity=0.212 Sum_probs=150.8
Q ss_pred hhhHHHhhCCCcEEEEeCCCcccc-------c-----ccccccC--------CCCCCcEEEEeCCCCCChhhHHHHHHHH
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDEN-------S-----HGVMGKS--------DNHVKPLILIEDVDVFFPEDRGFIAGIQ 67 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~r-------n-----~~v~gsl--------~~~kkkLILIDEVD~LfeeDrGf~~AL~ 67 (712)
.+.++|+++|+.++|+|+++.+.. . ..+.+.+ ...++.||||||||.|+.++++++.+|.
T Consensus 93 la~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~ 172 (516)
T 1sxj_A 93 AAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLA 172 (516)
T ss_dssp HHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHH
T ss_pred HHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHH
Confidence 456899999999999999996532 0 0011111 1135789999999999999999999999
Q ss_pred HHHHhcCCcEEEEecCCCC-CCcccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHH
Q 005137 68 QIAEKAKGPVILTSNSNNI-TLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHL 145 (712)
Q Consensus 68 ~LiekTKrPIILTCND~n~-~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~L 145 (712)
++++..++|||+|||+... .++.+..+ ..|+|++|+.+++..+|..+|.+||+.+++++++.|+..++||+|+++|.|
T Consensus 173 ~~l~~~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 173 QFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp HHHHHCSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHhcCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 9999999999999999763 34444444 789999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCccc-------ccccccCCCCCCcccccccCCCccCCCC--CCch---hHHHHHHHHhhhhhhhcccc
Q 005137 146 QFWCQNKGYGKDK-------KLQKLYVPELFDPDAGHHMLPKKIPWGF--PSQL---SELVVKEIMKSLSLMEENST 210 (712)
Q Consensus 146 Qf~s~s~~~~~~k-------~~~k~~~~~pfD~i~g~~l~p~i~p~~f--p~~L---~eL~~~ei~~si~~~een~~ 210 (712)
|+++.+++..+.. .|++.....+|+ ++++.+.++.+...- ...+ .++++.+....+..++|||.
T Consensus 253 ~~~~~~~~~It~~~v~~~~~~~~~~~~~~~f~-~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~eNy~ 328 (516)
T 1sxj_A 253 STISTTTKTINHENINEISKAWEKNIALKPFD-IAHKMLDGQIYSDIGSRNFTLNDKIALYFDDFDFTPLMIQENYL 328 (516)
T ss_dssp THHHHHSSCCCTTHHHHHHHHHHTTTTSHHHH-HHHHHTBGGGTSTTGGGTSCHHHHHHHHTTSTTTHHHHHHHHSS
T ss_pred HHHHhcCCCCchHHHHHHHHhhccCCCCCHHH-HHHHHhcCCccccccccCCCHHHhhhhhccCHHHHHHHHHHHhh
Confidence 9998866532222 266777778888 666766555432110 1122 33444444555556666554
No 2
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.37 E-value=1.8e-12 Score=131.37 Aligned_cols=138 Identities=18% Similarity=0.248 Sum_probs=109.9
Q ss_pred hhhHHHhhCCCcEEEEeCCCcccc---c---ccc-cccCCCCCCcEEEEeCCCCCC-hhhHHHHHHHHHHHHh--cCCcE
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDEN---S---HGV-MGKSDNHVKPLILIEDVDVFF-PEDRGFIAGIQQIAEK--AKGPV 77 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~r---n---~~v-~gsl~~~kkkLILIDEVD~Lf-eeDrGf~~AL~~Liek--TKrPI 77 (712)
.+.++|+++|.+++|+|+++.+.. . .+. ...+. ..+++|||||+|.++ .+ ...+|.++++. .+++|
T Consensus 64 la~~la~~l~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~-~~~~vliiDEi~~l~~~~---~~~~L~~~le~~~~~~~i 139 (324)
T 3u61_B 64 VAKALCHDVNADMMFVNGSDCKIDFVRGPLTNFASAASFD-GRQKVIVIDEFDRSGLAE---SQRHLRSFMEAYSSNCSI 139 (324)
T ss_dssp HHHHHHHHTTEEEEEEETTTCCHHHHHTHHHHHHHBCCCS-SCEEEEEEESCCCGGGHH---HHHHHHHHHHHHGGGCEE
T ss_pred HHHHHHHHhCCCEEEEcccccCHHHHHHHHHHHHhhcccC-CCCeEEEEECCcccCcHH---HHHHHHHHHHhCCCCcEE
Confidence 356789999999999999985421 1 111 11122 257899999999998 54 34567777665 46789
Q ss_pred EEEecCCCCCCcccccc-eeeEEcCCCHHH-------HHHHHHHHHHHcCCCCCH-HHHHHHHHHcCCcHHHHHHHHHHH
Q 005137 78 ILTSNSNNITLPDSLDR-LEVSFTMPMPKD-------LLSHLQMICAAEKVELQQ-HLLVQLIESCRADIRKTIMHLQFW 148 (712)
Q Consensus 78 ILTCND~n~~Lpkllsr-l~IrFkrPs~~e-------I~srL~~Ic~~EGikId~-~~L~~LI~~S~GDIRqaLN~LQf~ 148 (712)
|++||......+.+++| ..++|++|+.++ +..++..+|..||+.+++ ++++.|+..++||+|+++|.||.+
T Consensus 140 I~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~ 219 (324)
T 3u61_B 140 IITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSY 219 (324)
T ss_dssp EEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHHHH
T ss_pred EEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999987655666777 789999999765 678889999999999998 999999999999999999999999
Q ss_pred h
Q 005137 149 C 149 (712)
Q Consensus 149 s 149 (712)
+
T Consensus 220 ~ 220 (324)
T 3u61_B 220 S 220 (324)
T ss_dssp G
T ss_pred h
Confidence 8
No 3
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.13 E-value=1.8e-10 Score=117.36 Aligned_cols=107 Identities=14% Similarity=0.275 Sum_probs=93.7
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCCCCCcccccc-eeeEEcCCCHHHHHHHHHHHHHHcC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEK 119 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EG 119 (712)
++++|||||+|.|.. ....+|.++++. .+++||++||+....++.+++| ..++|++|+.+++..+|..+|.+||
T Consensus 134 ~~~vlilDE~~~L~~---~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~ 210 (354)
T 1sxj_E 134 RYKCVIINEANSLTK---DAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNER 210 (354)
T ss_dssp CCEEEEEECTTSSCH---HHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEeCccccCH---HHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcC
Confidence 578999999999754 456778887775 3568999999987766677788 7899999999999999999999999
Q ss_pred CCCC-HHHHHHHHHHcCCcHHHHHHHHHHHhhcC
Q 005137 120 VELQ-QHLLVQLIESCRADIRKTIMHLQFWCQNK 152 (712)
Q Consensus 120 ikId-~~~L~~LI~~S~GDIRqaLN~LQf~s~s~ 152 (712)
+.++ +++++.|+..++||+|++++.||......
T Consensus 211 ~~~~~~~~l~~i~~~~~G~~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 211 IQLETKDILKRIAQASNGNLRVSLLMLESMALNN 244 (354)
T ss_dssp CEECCSHHHHHHHHHHTTCHHHHHHHHTHHHHTT
T ss_pred CCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999 99999999999999999999999877654
No 4
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.11 E-value=7.9e-11 Score=117.00 Aligned_cols=141 Identities=18% Similarity=0.162 Sum_probs=109.7
Q ss_pred hhHHHhhC-----CCcEEEEeCCCccccc-------ccc-cccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--c
Q 005137 9 LCEAAQHA-----DDEVVEVIHIPDDENS-------HGV-MGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--A 73 (712)
Q Consensus 9 ~~aIAkel-----GydVIELNASDdR~rn-------~~v-~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--T 73 (712)
+.++|+.+ +..++++|+++.++.. ... ...+...++++|||||+|.+..+ .+.+|.++++. .
T Consensus 55 a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~---~~~~L~~~le~~~~ 131 (319)
T 2chq_A 55 AIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD---AQAALRRTMEMYSK 131 (319)
T ss_dssp HHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHH---HHHTTGGGTSSSSS
T ss_pred HHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHH---HHHHHHHHHHhcCC
Confidence 34556554 4568999999865320 111 11222345789999999999764 34567777665 4
Q ss_pred CCcEEEEecCCCCCCcccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC
Q 005137 74 KGPVILTSNSNNITLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNK 152 (712)
Q Consensus 74 KrPIILTCND~n~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~s~ 152 (712)
.++||++||......+.+.++ ..++|.+|+.+++..+|..++.++|+.+++++++.|+..++||+|++++.||..+..+
T Consensus 132 ~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~ 211 (319)
T 2chq_A 132 SCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG 211 (319)
T ss_dssp SEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHSS
T ss_pred CCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 567999999876656666677 7899999999999999999999999999999999999999999999999999887653
No 5
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.07 E-value=4e-10 Score=112.08 Aligned_cols=132 Identities=17% Similarity=0.180 Sum_probs=105.1
Q ss_pred CCcEEEEeCCCcccc----c---ccc--cccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCC
Q 005137 17 DDEVVEVIHIPDDEN----S---HGV--MGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNN 85 (712)
Q Consensus 17 GydVIELNASDdR~r----n---~~v--~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n 85 (712)
+..++++|+++.+.. . ... ...+...++++|||||+|.+..+ .+.+|.++++. ....+|++||+..
T Consensus 72 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~---~~~~L~~~le~~~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 72 ADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG---AQQALRRTMELYSNSTRFAFACNQSN 148 (323)
T ss_dssp HHHEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH---HHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred cCCEEEecCccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH---HHHHHHHHHhccCCCceEEEEeCChh
Confidence 567999999986431 0 111 11121335789999999999865 35677777776 4567999999876
Q ss_pred CCCcccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 005137 86 ITLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQN 151 (712)
Q Consensus 86 ~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~s 151 (712)
...+.++++ ..++|.+|+.+++..+|..++..+|+.++++.++.|+..++||+|.+++.|+.....
T Consensus 149 ~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~ 215 (323)
T 1sxj_B 149 KIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAG 215 (323)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 655666677 789999999999999999999999999999999999999999999999999987754
No 6
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.05 E-value=3.1e-10 Score=116.67 Aligned_cols=141 Identities=16% Similarity=0.164 Sum_probs=109.1
Q ss_pred hhHHHhhC-----CCcEEEEeCCCcccc----c---ccc-cccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--c
Q 005137 9 LCEAAQHA-----DDEVVEVIHIPDDEN----S---HGV-MGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--A 73 (712)
Q Consensus 9 ~~aIAkel-----GydVIELNASDdR~r----n---~~v-~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--T 73 (712)
+.++|+.+ ...++|+|+++.++. . .+. .........+++|+||+|.|+.+ ...+|.++++. .
T Consensus 63 a~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~---~~~~L~~~le~~~~ 139 (340)
T 1sxj_C 63 IVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA---AQNALRRVIERYTK 139 (340)
T ss_dssp HHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH---HHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHH---HHHHHHHHHhcCCC
Confidence 34455553 246999999986432 1 111 11112224799999999999864 45677788776 3
Q ss_pred CCcEEEEecCCCCCCcccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC
Q 005137 74 KGPVILTSNSNNITLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNK 152 (712)
Q Consensus 74 KrPIILTCND~n~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~s~ 152 (712)
...+|++||.....++.+++| ..++|.+++.+++..+|..++..||+.+++.++..|+..++||+|+++|.||..+...
T Consensus 140 ~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l~~~~~~~ 219 (340)
T 1sxj_C 140 NTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATL 219 (340)
T ss_dssp TEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTT
T ss_pred CeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 457999999877666777788 7899999999999999999999999999999999999999999999999999776543
No 7
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.03 E-value=6.1e-10 Score=110.98 Aligned_cols=140 Identities=16% Similarity=0.171 Sum_probs=107.8
Q ss_pred hHHHhhC-----CCcEEEEeCCCcccc----c---c-cccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cC
Q 005137 10 CEAAQHA-----DDEVVEVIHIPDDEN----S---H-GVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AK 74 (712)
Q Consensus 10 ~aIAkel-----GydVIELNASDdR~r----n---~-~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TK 74 (712)
.++|+.+ +..++++|+++.+.. . . .....+...++++||+||+|.+..+ .+.+|.++++. ..
T Consensus 64 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~---~~~~L~~~le~~~~~ 140 (327)
T 1iqp_A 64 LALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQD---AQQALRRTMEMFSSN 140 (327)
T ss_dssp HHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH---HHHHHHHHHHHTTTT
T ss_pred HHHHHHhcCCcccCceEEeeccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHH---HHHHHHHHHHhcCCC
Confidence 4455553 345999999985421 0 1 1112223245789999999999764 45677777776 45
Q ss_pred CcEEEEecCCCCCCcccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC
Q 005137 75 GPVILTSNSNNITLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNK 152 (712)
Q Consensus 75 rPIILTCND~n~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~s~ 152 (712)
.+||++||......+.+.++ ..++|.+|+.+++..+|..++..+|+.+++++++.|+..++||+|.+++.|+......
T Consensus 141 ~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~ 219 (327)
T 1iqp_A 141 VRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALD 219 (327)
T ss_dssp EEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHhcC
Confidence 68999999876555556666 6799999999999999999999999999999999999999999999999999877543
No 8
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.97 E-value=2.2e-09 Score=108.66 Aligned_cols=106 Identities=15% Similarity=0.231 Sum_probs=90.6
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCcEEEEecCCCCCCcccccc-eeeEEcCCCHHHHHHHHHHHHHHcC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNNITLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEK 119 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrPIILTCND~n~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EG 119 (712)
..++|+|||+|.+... ...+|.++++.. +.++|++||......+.+++| ..+.|.+|+..++..+|..++..+|
T Consensus 133 ~~~vliiDE~~~l~~~---~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~ 209 (353)
T 1sxj_D 133 PYKIIILDEADSMTAD---AQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQEN 209 (353)
T ss_dssp SCEEEEETTGGGSCHH---HHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred CceEEEEECCCccCHH---HHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhC
Confidence 4579999999999765 346677777753 457999999876656666777 7899999999999999999999999
Q ss_pred CCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q 005137 120 VELQQHLLVQLIESCRADIRKTIMHLQFWCQN 151 (712)
Q Consensus 120 ikId~~~L~~LI~~S~GDIRqaLN~LQf~s~s 151 (712)
+.+++++++.|+..++||+|+++|.|+.+...
T Consensus 210 ~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~ 241 (353)
T 1sxj_D 210 VKCDDGVLERILDISAGDLRRGITLLQSASKG 241 (353)
T ss_dssp CCCCHHHHHHHHHHTSSCHHHHHHHHHHTHHH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999976653
No 9
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.91 E-value=1.1e-08 Score=94.66 Aligned_cols=133 Identities=19% Similarity=0.174 Sum_probs=102.4
Q ss_pred CCcEEEEeCCCccccc-------cccc-ccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCCC
Q 005137 17 DDEVVEVIHIPDDENS-------HGVM-GKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNI 86 (712)
Q Consensus 17 GydVIELNASDdR~rn-------~~v~-gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n~ 86 (712)
+..++++|+++..... .... ......++.+|+|||+|.+.... +.+|..+++. .+.++|+++|....
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~---~~~l~~~l~~~~~~~~~i~~~~~~~~ 144 (226)
T 2chg_A 68 RDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADA---QAALRRTMEMYSKSCRFILSCNYVSR 144 (226)
T ss_dssp GGGEEEEETTCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHH---HHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred ccceEEeccccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHHH---HHHHHHHHHhcCCCCeEEEEeCChhh
Confidence 4569999998754320 1110 11122457899999999997653 4566666665 34679999998655
Q ss_pred CCcccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC
Q 005137 87 TLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNK 152 (712)
Q Consensus 87 ~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~s~ 152 (712)
..+.+.++ ..+.|.+|+.+++..+|..++..+|+.+++++++.|+..++||+|.+++.|+.++...
T Consensus 145 ~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~ 211 (226)
T 2chg_A 145 IIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG 211 (226)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred cCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Confidence 45555666 6789999999999999999999999999999999999999999999999999887654
No 10
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.78 E-value=4.5e-08 Score=99.74 Aligned_cols=129 Identities=12% Similarity=0.125 Sum_probs=99.2
Q ss_pred CcEEEEeCCCcccc-------cccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCCCCC
Q 005137 18 DEVVEVIHIPDDEN-------SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITL 88 (712)
Q Consensus 18 ydVIELNASDdR~r-------n~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n~~L 88 (712)
.+++++++++.+.. ....... ...++++|||||+|.+..+ .+.+|.++++. ..+.+|+++|+.....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~vliiDe~~~l~~~---~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 88 VDLIEIDAASRTKVEDTRDLLDNVQYAP-ARGRFKVYLIDEVHMLSRH---SFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp SSCEEEETTCSCCSSCHHHHHHHTTSCC-SSSSSEEEEEECGGGSCHH---HHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred CceEEecccccCCHHHHHHHHHHHhhcc-ccCCeEEEEEECcchhcHH---HHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 36899998753211 0111111 1235789999999999654 56778888876 3456888998866545
Q ss_pred cccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 005137 89 PDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (712)
Q Consensus 89 pkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~ 150 (712)
+.++++ ..++|.+|+.+++..+|..++..+|+.+++++++.|+..++||+|.+++.|+....
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~ 226 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA 226 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 556677 78999999999999999999999999999999999999999999999999976543
No 11
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.76 E-value=1.2e-08 Score=104.68 Aligned_cols=128 Identities=10% Similarity=-0.019 Sum_probs=99.2
Q ss_pred cEEEEeCCCcccc--cccccccCCCCCCcEEEEeCCCC-CChhhHHHHHHHHHHHHh--cCCcEEEEecCCCC------C
Q 005137 19 EVVEVIHIPDDEN--SHGVMGKSDNHVKPLILIEDVDV-FFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNI------T 87 (712)
Q Consensus 19 dVIELNASDdR~r--n~~v~gsl~~~kkkLILIDEVD~-LfeeDrGf~~AL~~Liek--TKrPIILTCND~n~------~ 87 (712)
.++++++.++... ......++++ .++|||+||+|. |+.+ .+.+|.++++. ....+|++|++.++ .
T Consensus 51 ~~~~~~~~~~~~~l~~~~~~~plf~-~~kvvii~~~~~kl~~~---~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~ 126 (343)
T 1jr3_D 51 HTFSIDPNTDWNAIFSLCQAMSLFA-SRQTLLLLLPENGPNAA---INEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAW 126 (343)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHHCC-SCEEEEEECCSSCCCTT---HHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHH
T ss_pred EEEEecCCCCHHHHHHHhcCcCCcc-CCeEEEEECCCCCCChH---HHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHH
Confidence 5778886544322 1112223344 579999999999 8764 56788888886 35679999987542 2
Q ss_pred Ccccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 005137 88 LPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (712)
Q Consensus 88 Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~ 150 (712)
++.+.++ ..++|++++..++..+|..++.++|+.+++++++.|+..++||+|.++|.|+-.+.
T Consensus 127 ~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l 190 (343)
T 1jr3_D 127 FTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSL 190 (343)
T ss_dssp HHHHTTTCEEEEECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 2333456 78999999999999999999999999999999999999999999999999997665
No 12
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.70 E-value=1.7e-08 Score=104.52 Aligned_cols=117 Identities=10% Similarity=0.113 Sum_probs=91.3
Q ss_pred CCcEEEEeCCC-ccc----c---cccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCcEEEEecCCCC
Q 005137 17 DDEVVEVIHIP-DDE----N---SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNNI 86 (712)
Q Consensus 17 GydVIELNASD-dR~----r---n~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrPIILTCND~n~ 86 (712)
..+++|+||++ +++ | .........+ +.+||||||+|.|+.+ ...+|.++++.- ...+||+||++..
T Consensus 49 ~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~-~~kvviIdead~lt~~---a~naLLk~LEep~~~t~fIl~t~~~~k 124 (305)
T 2gno_A 49 ASDVLEIDPEGENIGIDDIRTIKDFLNYSPELY-TRKYVIVHDCERMTQQ---AANAFLKALEEPPEYAVIVLNTRRWHY 124 (305)
T ss_dssp TTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSS-SSEEEEETTGGGBCHH---HHHHTHHHHHSCCTTEEEEEEESCGGG
T ss_pred CCCEEEEcCCcCCCCHHHHHHHHHHHhhccccC-CceEEEeccHHHhCHH---HHHHHHHHHhCCCCCeEEEEEECChHh
Confidence 56899999986 332 1 1111112223 5799999999999865 467899999973 5679999999887
Q ss_pred CCcccccceeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Q 005137 87 TLPDSLDRLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQF 147 (712)
Q Consensus 87 ~Lpkllsrl~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf 147 (712)
.++.+++| .++|++|+.+++..+|..++ | ++++.+ ..+.||+|++||.||.
T Consensus 125 l~~tI~SR-~~~f~~l~~~~i~~~L~~~~---~--i~~~~~----~~~~g~~~~al~~l~~ 175 (305)
T 2gno_A 125 LLPTIKSR-VFRVVVNVPKEFRDLVKEKI---G--DLWEEL----PLLERDFKTALEAYKL 175 (305)
T ss_dssp SCHHHHTT-SEEEECCCCHHHHHHHHHHH---T--THHHHC----GGGGTCHHHHHHHHHH
T ss_pred ChHHHHce-eEeCCCCCHHHHHHHHHHHh---C--CCHHHH----HHHCCCHHHHHHHHHH
Confidence 78888899 99999999999999999998 3 667666 4479999999999973
No 13
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.66 E-value=2.5e-07 Score=87.49 Aligned_cols=132 Identities=20% Similarity=0.228 Sum_probs=94.1
Q ss_pred CCcEEEEeCCCcccccccccccCCCCCCcEEEEeCCCCCChhh--HH-HHHHHHHHHHhcCCcEEEEecCCCC----CCc
Q 005137 17 DDEVVEVIHIPDDENSHGVMGKSDNHVKPLILIEDVDVFFPED--RG-FIAGIQQIAEKAKGPVILTSNSNNI----TLP 89 (712)
Q Consensus 17 GydVIELNASDdR~rn~~v~gsl~~~kkkLILIDEVD~LfeeD--rG-f~~AL~~LiekTKrPIILTCND~n~----~Lp 89 (712)
|+.++.+++++-..........+ .+..+|+|||+|.+.... .. +...+.......+.++|+++|.... ..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~ 157 (242)
T 3bos_A 80 ERRSFYIPLGIHASISTALLEGL--EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLP 157 (242)
T ss_dssp TCCEEEEEGGGGGGSCGGGGTTG--GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCH
T ss_pred CCeEEEEEHHHHHHHHHHHHHhc--cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhh
Confidence 68899999877432210000111 246899999999997643 22 2333333344333349999987542 123
Q ss_pred ccccc----eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 005137 90 DSLDR----LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (712)
Q Consensus 90 kllsr----l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~ 150 (712)
.+.++ ..+.|.+|+.+++..++..++..+|+.+++++++.|+..+.||+|.+++.|+....
T Consensus 158 ~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~ 222 (242)
T 3bos_A 158 DLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDK 222 (242)
T ss_dssp HHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 44444 47899999999999999999999999999999999999999999999999986554
No 14
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.64 E-value=1.5e-07 Score=87.50 Aligned_cols=105 Identities=13% Similarity=0.153 Sum_probs=87.6
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEecCCCCCCcccccc-eeeEEcCCCHHHHHHHHHHHHHHcC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSNSNNITLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEK 119 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCND~n~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EG 119 (712)
++.+|+|||+|.+... .+.+|.++++. .+..+|+++|......+.++++ ..+.|.+++.+++..++..++..+|
T Consensus 126 ~~~vlviDe~~~l~~~---~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~ 202 (250)
T 1njg_A 126 RFKVYLIDEVHMLSRH---SFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH 202 (250)
T ss_dssp SSEEEEEETGGGSCHH---HHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTT
T ss_pred CceEEEEECcccccHH---HHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 5689999999998643 56677777765 3456899998865444445566 7899999999999999999999999
Q ss_pred CCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q 005137 120 VELQQHLLVQLIESCRADIRKTIMHLQFWCQ 150 (712)
Q Consensus 120 ikId~~~L~~LI~~S~GDIRqaLN~LQf~s~ 150 (712)
+.++++.++.|+..++|++|.+++.++....
T Consensus 203 ~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~ 233 (250)
T 1njg_A 203 IAHEPRALQLLARAAEGSLRDALSLTDQAIA 233 (250)
T ss_dssp CCBCHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999987654
No 15
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.61 E-value=7.8e-08 Score=99.45 Aligned_cols=122 Identities=8% Similarity=-0.023 Sum_probs=94.4
Q ss_pred CcEEEEeCC---Cccc----c---cccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCcEEEEecCCC
Q 005137 18 DEVVEVIHI---PDDE----N---SHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSNN 85 (712)
Q Consensus 18 ydVIELNAS---DdR~----r---n~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrPIILTCND~n 85 (712)
.+++++++. +++. | ........ ..+.++|||||+|.|+.+ ...+|.++++.- +..+|++||++.
T Consensus 74 ~d~~~~~~~~~~~~~~i~~ir~l~~~~~~~~~-~~~~kvviIdead~l~~~---a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 74 PDYYTLAPEKGKNTLGVDAVREVTEKLNEHAR-LGGAKVVWVTDAALLTDA---AANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp TTEEEECCCTTCSSBCHHHHHHHHHHTTSCCT-TSSCEEEEESCGGGBCHH---HHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred CCEEEEeccccCCCCCHHHHHHHHHHHhhccc-cCCcEEEEECchhhcCHH---HHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 679999985 3221 1 01111111 235799999999999864 456788888763 456999999987
Q ss_pred CCCcccccc-eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHH
Q 005137 86 ITLPDSLDR-LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQFW 148 (712)
Q Consensus 86 ~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf~ 148 (712)
..++.+++| ..++|++|+.+++..+|..++ .++++.+..++..++||+|++++.|+..
T Consensus 150 ~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G~~r~a~~~l~~~ 208 (334)
T 1a5t_A 150 RLLATLRSRCRLHYLAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAGSPGAALALFQGD 208 (334)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTTCHHHHHHTTSSH
T ss_pred hCcHHHhhcceeeeCCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCCCHHHHHHHhccc
Confidence 667778888 789999999999999998876 7899999999999999999999988743
No 16
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.57 E-value=1e-07 Score=103.68 Aligned_cols=142 Identities=12% Similarity=0.101 Sum_probs=105.4
Q ss_pred hhhHHHhhCCCcEEEEeCCCcccc---c--ccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhcCCcEEEEec
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDEN---S--HGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSN 82 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~r---n--~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekTKrPIILTCN 82 (712)
.+.++|+..+..++++|++..-.. . ..........++.+|+|||||.+... .+.+|..+++...+.||++++
T Consensus 66 lAr~ia~~~~~~f~~l~a~~~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~---~q~~LL~~le~~~v~lI~att 142 (447)
T 3pvs_A 66 LAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS---QQDAFLPHIEDGTITFIGATT 142 (447)
T ss_dssp HHHHHHHHTTCEEEEEETTTCCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC---------CCHHHHHTTSCEEEEEES
T ss_pred HHHHHHHHhCCCeEEEEeccCCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH---HHHHHHHHHhcCceEEEecCC
Confidence 467899999999999999773211 0 00000001235789999999999764 345778888888877887775
Q ss_pred CCC--CCCcccccc-eeeEEcCCCHHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC
Q 005137 83 SNN--ITLPDSLDR-LEVSFTMPMPKDLLSHLQMICAA-------EKVELQQHLLVQLIESCRADIRKTIMHLQFWCQNK 152 (712)
Q Consensus 83 D~n--~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~-------EGikId~~~L~~LI~~S~GDIRqaLN~LQf~s~s~ 152 (712)
... ...+.+++| ..+.|.+|+.+++...|..++.. +++.+++++++.|+..++||+|+++|.|+......
T Consensus 143 ~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a 222 (447)
T 3pvs_A 143 ENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMA 222 (447)
T ss_dssp SCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHS
T ss_pred CCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhc
Confidence 532 234556677 67899999999999999999987 77889999999999999999999999999877654
No 17
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.54 E-value=3.9e-07 Score=92.61 Aligned_cols=137 Identities=9% Similarity=0.056 Sum_probs=104.9
Q ss_pred hhhHHHhhCCCcEEEEeCCCcccccccccccC-CCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhcC------------
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDENSHGVMGKS-DNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAK------------ 74 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~rn~~v~gsl-~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekTK------------ 74 (712)
.+.++|+.++..++++|++....... ..+.+ ......+|+|||+|.+... .+.+|...++...
T Consensus 71 la~~ia~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~vl~lDEi~~l~~~---~~~~Ll~~l~~~~~~~~~~~~~~~~ 146 (338)
T 3pfi_A 71 LANIISYEMSANIKTTAAPMIEKSGD-LAAILTNLSEGDILFIDEIHRLSPA---IEEVLYPAMEDYRLDIIIGSGPAAQ 146 (338)
T ss_dssp HHHHHHHHTTCCEEEEEGGGCCSHHH-HHHHHHTCCTTCEEEEETGGGCCHH---HHHHHHHHHHTSCC---------CC
T ss_pred HHHHHHHHhCCCeEEecchhccchhH-HHHHHHhccCCCEEEEechhhcCHH---HHHHHHHHHHhccchhhcccCcccc
Confidence 45678999999999999976432100 11101 1235689999999999754 4556666666543
Q ss_pred --------CcEEEEecCCCCCCcccccc--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHH
Q 005137 75 --------GPVILTSNSNNITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMH 144 (712)
Q Consensus 75 --------rPIILTCND~n~~Lpkllsr--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~ 144 (712)
..||+++|......+.+++| ..+.|..|+.+++...+..++...++.+++++++.|+..+.|++|.++|.
T Consensus 147 ~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 147 TIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp CCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHH
T ss_pred ceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHH
Confidence 34777778765444556677 57999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 005137 145 LQFW 148 (712)
Q Consensus 145 LQf~ 148 (712)
|+..
T Consensus 227 l~~~ 230 (338)
T 3pfi_A 227 LKRV 230 (338)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9873
No 18
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.46 E-value=2.2e-06 Score=86.09 Aligned_cols=139 Identities=9% Similarity=0.040 Sum_probs=104.9
Q ss_pred hhhHHHhhCCCcEEEEeCCCcccccccccccCCC--CCCcEEEEeCCCCCChhhHHHHHHHHHHHHhc------------
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDENSHGVMGKSDN--HVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA------------ 73 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~rn~~v~gsl~~--~kkkLILIDEVD~LfeeDrGf~~AL~~LiekT------------ 73 (712)
.+.++|++++..++.+|++....... ..+.+.. ..+.+|+|||+|.+... .+..|..+++..
T Consensus 54 la~~i~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~~~~~l~lDEi~~l~~~---~~~~L~~~l~~~~~~~v~~~~~~~ 129 (324)
T 1hqc_A 54 LAHVIAHELGVNLRVTSGPAIEKPGD-LAAILANSLEEGDILFIDEIHRLSRQ---AEEHLYPAMEDFVMDIVIGQGPAA 129 (324)
T ss_dssp HHHHHHHHHTCCEEEECTTTCCSHHH-HHHHHTTTCCTTCEEEETTTTSCCHH---HHHHHHHHHHHSEEEECCSSSSSC
T ss_pred HHHHHHHHhCCCEEEEeccccCChHH-HHHHHHHhccCCCEEEEECCcccccc---hHHHHHHHHHhhhhHHhccccccc
Confidence 45678889999999999877432100 1111111 34679999999999864 345566666643
Q ss_pred --------CCcEEEEecCCCCCCcccccc--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHH
Q 005137 74 --------KGPVILTSNSNNITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIM 143 (712)
Q Consensus 74 --------KrPIILTCND~n~~Lpkllsr--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN 143 (712)
...+|+++|......+.+++| ..+.|..|+.+++...+..++...|+.+++++++.|+..+.|+.|.+.+
T Consensus 130 ~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~ 209 (324)
T 1hqc_A 130 RTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKR 209 (324)
T ss_dssp CCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHH
T ss_pred cccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHH
Confidence 234888888765544556677 4789999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 005137 144 HLQFWCQ 150 (712)
Q Consensus 144 ~LQf~s~ 150 (712)
.++....
T Consensus 210 ~l~~~~~ 216 (324)
T 1hqc_A 210 LFRRVRD 216 (324)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 9987643
No 19
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.46 E-value=4.9e-07 Score=92.58 Aligned_cols=104 Identities=22% Similarity=0.236 Sum_probs=86.2
Q ss_pred CcEEEEeCCCCCChhhHHHHHHHHHHHHhcCCcEEEEecCC-------------CCCCcccccc-eeeEEcCCCHHHHHH
Q 005137 44 KPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSN-------------NITLPDSLDR-LEVSFTMPMPKDLLS 109 (712)
Q Consensus 44 kkLILIDEVD~LfeeDrGf~~AL~~LiekTKrPIILTCND~-------------n~~Lpkllsr-l~IrFkrPs~~eI~s 109 (712)
+.+|+|||||.|.. ....+|.++++....|+|++++.. ....+.+++| ..+.|.+|+.+++..
T Consensus 190 ~~vl~IDEi~~l~~---~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~ 266 (368)
T 3uk6_A 190 PGVLFIDEVHMLDI---ESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQ 266 (368)
T ss_dssp BCEEEEESGGGSBH---HHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHH
T ss_pred CceEEEhhccccCh---HHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHH
Confidence 36999999999965 456788888888777888766642 2223456677 568999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHcC-CcHHHHHHHHHHHhh
Q 005137 110 HLQMICAAEKVELQQHLLVQLIESCR-ADIRKTIMHLQFWCQ 150 (712)
Q Consensus 110 rL~~Ic~~EGikId~~~L~~LI~~S~-GDIRqaLN~LQf~s~ 150 (712)
+|...+..+|+.+++++++.|+..+. ||+|.+++.|+....
T Consensus 267 il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~ 308 (368)
T 3uk6_A 267 ILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASL 308 (368)
T ss_dssp HHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998 999999999986543
No 20
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.32 E-value=1.4e-06 Score=91.70 Aligned_cols=142 Identities=15% Similarity=0.080 Sum_probs=99.0
Q ss_pred hhhHHHhhCCCcEEEEeCCCcccc----c-ccccccC---CCCCCcEEEEeCCCCCChhh--------HHHHHHHHHHHH
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDEN----S-HGVMGKS---DNHVKPLILIEDVDVFFPED--------RGFIAGIQQIAE 71 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~r----n-~~v~gsl---~~~kkkLILIDEVD~LfeeD--------rGf~~AL~~Lie 71 (712)
.+.++|+++|..++++|+++-... . ......+ ....+.+|+|||||.|+... ...+..+...+.
T Consensus 164 la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~ 243 (389)
T 3vfd_A 164 LAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFD 243 (389)
T ss_dssp HHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhh
Confidence 467889999999999999884431 0 0000000 11245799999999995432 222334433333
Q ss_pred h------cCCcEEEEecCCCCCCcccccc--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHH
Q 005137 72 K------AKGPVILTSNSNNITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIM 143 (712)
Q Consensus 72 k------TKrPIILTCND~n~~Lpkllsr--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN 143 (712)
. .++.||.++|.....-+.+++| ..|.|..|+.++....|..++..++..+++..+..|+..+.|+.++.|+
T Consensus 244 ~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~ 323 (389)
T 3vfd_A 244 GVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLT 323 (389)
T ss_dssp HHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHH
T ss_pred cccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHH
Confidence 2 3345777888865444556667 4689999999999999999999999999999999999999999998888
Q ss_pred HHHHHh
Q 005137 144 HLQFWC 149 (712)
Q Consensus 144 ~LQf~s 149 (712)
.|.-.+
T Consensus 324 ~L~~~a 329 (389)
T 3vfd_A 324 ALAKDA 329 (389)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 875443
No 21
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.25 E-value=1.5e-06 Score=93.71 Aligned_cols=101 Identities=17% Similarity=0.283 Sum_probs=84.0
Q ss_pred cEEEEeCCCCCChhhHHHHHHHHHHHHhcCCcEEE-EecC-------------CCCCCcccccc-eeeEEcCCCHHHHHH
Q 005137 45 PLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVIL-TSNS-------------NNITLPDSLDR-LEVSFTMPMPKDLLS 109 (712)
Q Consensus 45 kLILIDEVD~LfeeDrGf~~AL~~LiekTKrPIIL-TCND-------------~n~~Lpkllsr-l~IrFkrPs~~eI~s 109 (712)
++++|||||.|..+ ...+|.+.++.-..|+++ .+|. +....+.+++| ..++|.+++.+++..
T Consensus 297 ~VliIDEa~~l~~~---a~~aLlk~lEe~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~ 373 (456)
T 2c9o_A 297 GVLFVDEVHMLDIE---CFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQ 373 (456)
T ss_dssp CEEEEESGGGCBHH---HHHHHHHHTTSTTCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHH
T ss_pred eEEEEechhhcCHH---HHHHHHHHhhccCCCEEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHH
Confidence 69999999999654 677888888876656543 5632 23344557788 668999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHc-CCcHHHHHHHHHHH
Q 005137 110 HLQMICAAEKVELQQHLLVQLIESC-RADIRKTIMHLQFW 148 (712)
Q Consensus 110 rL~~Ic~~EGikId~~~L~~LI~~S-~GDIRqaLN~LQf~ 148 (712)
+|+.++..||+.++++++..|+..+ +|+.|.+++.|+..
T Consensus 374 iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a 413 (456)
T 2c9o_A 374 IIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPA 413 (456)
T ss_dssp HHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 9999999999999999999999999 99999999999854
No 22
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.20 E-value=1.3e-06 Score=87.35 Aligned_cols=142 Identities=13% Similarity=0.048 Sum_probs=101.6
Q ss_pred hhHHHhhC-------CCcEEEEeCCCccccc-----ccccccCCCCCCcEEEEeCCCCCCh------hhHHHHHHHHHHH
Q 005137 9 LCEAAQHA-------DDEVVEVIHIPDDENS-----HGVMGKSDNHVKPLILIEDVDVFFP------EDRGFIAGIQQIA 70 (712)
Q Consensus 9 ~~aIAkel-------GydVIELNASDdR~rn-----~~v~gsl~~~kkkLILIDEVD~Lfe------eDrGf~~AL~~Li 70 (712)
+.++|+.+ +..++++|+++-.... ....+.+....+.+|+|||+|.++. .+...+.+|.+++
T Consensus 84 a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l 163 (309)
T 3syl_A 84 ALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVM 163 (309)
T ss_dssp HHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHH
Confidence 44556665 3379999987733210 0001111112357999999999963 2566778888888
Q ss_pred Hhc--CCcEEEEecCCC--C---CCcccccc--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--------
Q 005137 71 EKA--KGPVILTSNSNN--I---TLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIES-------- 133 (712)
Q Consensus 71 ekT--KrPIILTCND~n--~---~Lpkllsr--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~-------- 133 (712)
+.. +..||+++|... . .-|.+++| ..|.|.+|+.+++...+..++...++.+++++++.|+..
T Consensus 164 ~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~ 243 (309)
T 3syl_A 164 ENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQP 243 (309)
T ss_dssp HHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSS
T ss_pred hcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCC
Confidence 876 346777776531 1 12455666 679999999999999999999999999999999999986
Q ss_pred cCCcHHHHHHHHHHHhh
Q 005137 134 CRADIRKTIMHLQFWCQ 150 (712)
Q Consensus 134 S~GDIRqaLN~LQf~s~ 150 (712)
..||+|.+.+.++....
T Consensus 244 ~~gn~r~l~~~l~~a~~ 260 (309)
T 3syl_A 244 HFANARSIRNALDRARL 260 (309)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 45999999999987664
No 23
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.20 E-value=7.7e-07 Score=91.02 Aligned_cols=103 Identities=21% Similarity=0.192 Sum_probs=79.2
Q ss_pred EEEEeCCCCCChh-hHHH-HHHHHHHHHhcCCcEEEEecCCC---CCCcccccc--eeeEEcCCCHHHHHHHHHHHHHH-
Q 005137 46 LILIEDVDVFFPE-DRGF-IAGIQQIAEKAKGPVILTSNSNN---ITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAA- 117 (712)
Q Consensus 46 LILIDEVD~Lfee-DrGf-~~AL~~LiekTKrPIILTCND~n---~~Lpkllsr--l~IrFkrPs~~eI~srL~~Ic~~- 117 (712)
+|+|||+|.+... +... +..+.... .+.+||+|+|+.. ...+.++++ ..|.|.+++.+++...|...+..
T Consensus 136 vlilDEi~~l~~~~~~~~~l~~l~~~~--~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~ 213 (384)
T 2qby_B 136 IIYLDEVDTLVKRRGGDIVLYQLLRSD--ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYG 213 (384)
T ss_dssp EEEEETTHHHHHSTTSHHHHHHHHTSS--SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHT
T ss_pred EEEEECHHHhccCCCCceeHHHHhcCC--cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhh
Confidence 9999999999654 2333 44443333 6788999999863 222333344 48999999999999999998875
Q ss_pred -cCCCCCHHHHHHHHHHcC---CcHHHHHHHHHHHhh
Q 005137 118 -EKVELQQHLLVQLIESCR---ADIRKTIMHLQFWCQ 150 (712)
Q Consensus 118 -EGikId~~~L~~LI~~S~---GDIRqaLN~LQf~s~ 150 (712)
++..+++++++.++..+. ||+|.+++.|+....
T Consensus 214 ~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~ 250 (384)
T 2qby_B 214 LIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQ 250 (384)
T ss_dssp SCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred cccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 567899999999999998 999999999987653
No 24
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.14 E-value=6.7e-06 Score=81.43 Aligned_cols=142 Identities=15% Similarity=0.183 Sum_probs=97.4
Q ss_pred hhhHHHhhCCCcEEEEeCCCcccc-------ccccc-------ccCCC-CCCcEEEEeCCCCCChhh---------HHHH
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDEN-------SHGVM-------GKSDN-HVKPLILIEDVDVFFPED---------RGFI 63 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~r-------n~~v~-------gsl~~-~kkkLILIDEVD~LfeeD---------rGf~ 63 (712)
.+.++|+.++..++++|+++-... ..... +.+.. ..+.+|+|||+|.+.... .+.+
T Consensus 66 la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~ 145 (310)
T 1ofh_A 66 IARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQ 145 (310)
T ss_dssp HHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHH
Confidence 456889999999999999874321 00000 00000 136799999999997542 2346
Q ss_pred HHHHHHHHhc------------CCcEEEEecC----CCCCCcccccc--eeeEEcCCCHHHHHHHHH-----------HH
Q 005137 64 AGIQQIAEKA------------KGPVILTSNS----NNITLPDSLDR--LEVSFTMPMPKDLLSHLQ-----------MI 114 (712)
Q Consensus 64 ~AL~~LiekT------------KrPIILTCND----~n~~Lpkllsr--l~IrFkrPs~~eI~srL~-----------~I 114 (712)
.+|.++++.. ++.||+++|. .....+.+++| ..|.|.+|+.+++...+. ..
T Consensus 146 ~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~ 225 (310)
T 1ofh_A 146 RDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKAL 225 (310)
T ss_dssp HHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHH
T ss_pred HHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHH
Confidence 7788888753 3445555432 22223445566 468999999998888887 34
Q ss_pred HHHcCC--CCCHHHHHHHHHHc--------CCcHHHHHHHHHHHh
Q 005137 115 CAAEKV--ELQQHLLVQLIESC--------RADIRKTIMHLQFWC 149 (712)
Q Consensus 115 c~~EGi--kId~~~L~~LI~~S--------~GDIRqaLN~LQf~s 149 (712)
+..+|. .+++++++.|+..+ .||+|++.+.++...
T Consensus 226 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~ 270 (310)
T 1ofh_A 226 MATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLM 270 (310)
T ss_dssp HHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHS
T ss_pred HHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHH
Confidence 455675 68999999999998 899999999998765
No 25
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.08 E-value=1.1e-05 Score=82.16 Aligned_cols=105 Identities=11% Similarity=0.145 Sum_probs=82.8
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHH---h---cCCcEEEEecCCC---CCCcccccc---eeeEEcCCCHHHHHHH
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAE---K---AKGPVILTSNSNN---ITLPDSLDR---LEVSFTMPMPKDLLSH 110 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~Lie---k---TKrPIILTCND~n---~~Lpkllsr---l~IrFkrPs~~eI~sr 110 (712)
++.+|+|||+|.+ |...+.+|..+++ . .+.+||+++|+.. ...++.+++ ..|.|.+++.+++..+
T Consensus 125 ~~~vlilDE~~~l---~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~ 201 (389)
T 1fnn_A 125 LYMFLVLDDAFNL---APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDI 201 (389)
T ss_dssp CCEEEEEETGGGS---CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHH
T ss_pred CeEEEEEECcccc---chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHH
Confidence 4679999999999 5567777777764 2 5788999999862 223333344 3699999999999999
Q ss_pred HHHHHHHc--CCCCCHHHHHHHHHHc---------CCcHHHHHHHHHHHhh
Q 005137 111 LQMICAAE--KVELQQHLLVQLIESC---------RADIRKTIMHLQFWCQ 150 (712)
Q Consensus 111 L~~Ic~~E--GikId~~~L~~LI~~S---------~GDIRqaLN~LQf~s~ 150 (712)
+...+... ...+++++++.|+..+ .||+|.+++.|+....
T Consensus 202 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 202 LLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp HHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 99988762 3478999999999999 8999999999986543
No 26
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.00 E-value=6.2e-06 Score=83.63 Aligned_cols=108 Identities=14% Similarity=0.145 Sum_probs=80.1
Q ss_pred CCcEEEEeCCCCCChh--hHHHHHHHHHHHH----hcCCcEEEEecCCC---CCCcccccc---eeeEEcCCCHHHHHHH
Q 005137 43 VKPLILIEDVDVFFPE--DRGFIAGIQQIAE----KAKGPVILTSNSNN---ITLPDSLDR---LEVSFTMPMPKDLLSH 110 (712)
Q Consensus 43 kkkLILIDEVD~Lfee--DrGf~~AL~~Lie----kTKrPIILTCND~n---~~Lpkllsr---l~IrFkrPs~~eI~sr 110 (712)
++.+|+|||+|.+... .+..+..+..... ..+..+|+++|+.. ...+.++++ ..+.|.+++.+++...
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~i 209 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDI 209 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHH
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHH
Confidence 3569999999999664 4444444444333 45678999999863 222334445 3789999999999999
Q ss_pred HHHHHHH--cCCCCCHHHHHHHHHHcC---CcHHHHHHHHHHHhh
Q 005137 111 LQMICAA--EKVELQQHLLVQLIESCR---ADIRKTIMHLQFWCQ 150 (712)
Q Consensus 111 L~~Ic~~--EGikId~~~L~~LI~~S~---GDIRqaLN~LQf~s~ 150 (712)
|...+.. .+..+++++++.++..+. ||+|.+++.|+....
T Consensus 210 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~ 254 (387)
T 2v1u_A 210 LETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGE 254 (387)
T ss_dssp HHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 9998876 678899999999999998 999999999986543
No 27
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.96 E-value=2e-05 Score=78.68 Aligned_cols=138 Identities=14% Similarity=0.107 Sum_probs=95.1
Q ss_pred hhhHHHhhCCCcEEEEeCCCccccc-----cccc---ccCCCCCCcEEEEeCCCCCChhh--------HHHHHHHHHHHH
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDENS-----HGVM---GKSDNHVKPLILIEDVDVFFPED--------RGFIAGIQQIAE 71 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~rn-----~~v~---gsl~~~kkkLILIDEVD~LfeeD--------rGf~~AL~~Lie 71 (712)
.+.++|++++..++.+|+++-.... .... .......+.+|+|||+|.+.... ......+...+.
T Consensus 70 la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~ 149 (297)
T 3b9p_A 70 LARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFD 149 (297)
T ss_dssp HHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHh
Confidence 4678999999999999998843210 0000 00011346899999999996531 223334444443
Q ss_pred h-------cCCcEEEEecCCCCCCcccccc--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHH
Q 005137 72 K-------AKGPVILTSNSNNITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTI 142 (712)
Q Consensus 72 k-------TKrPIILTCND~n~~Lpkllsr--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaL 142 (712)
. .++-||.++|.+...-+.+++| ..+.|..|+.++....+..++..++..+++..++.|+..+.|..++.|
T Consensus 150 ~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l 229 (297)
T 3b9p_A 150 GLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDL 229 (297)
T ss_dssp HCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHH
T ss_pred cccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHH
Confidence 3 2345778888865433444455 568889999988888889999999999999999999999999777666
Q ss_pred HHH
Q 005137 143 MHL 145 (712)
Q Consensus 143 N~L 145 (712)
..|
T Consensus 230 ~~l 232 (297)
T 3b9p_A 230 TAL 232 (297)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 28
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.95 E-value=4.4e-05 Score=77.54 Aligned_cols=140 Identities=16% Similarity=0.156 Sum_probs=96.4
Q ss_pred hhHHHhhC---CCcEEEEeCCCcccc--cccccc---cCC--CCCCcEEEEeCCCCCChh---hHHHHHHHHHHHHhcCC
Q 005137 9 LCEAAQHA---DDEVVEVIHIPDDEN--SHGVMG---KSD--NHVKPLILIEDVDVFFPE---DRGFIAGIQQIAEKAKG 75 (712)
Q Consensus 9 ~~aIAkel---GydVIELNASDdR~r--n~~v~g---sl~--~~kkkLILIDEVD~Lfee---DrGf~~AL~~LiekTKr 75 (712)
+.++|+++ |+.++.+|+.+-... .....+ .+. -....+|+|||+|.+... ...+...+..+.+ ...
T Consensus 54 a~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~-~~~ 132 (324)
T 1l8q_A 54 LQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEK 132 (324)
T ss_dssp HHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccCChHHHHHHHHHHHHHHH-CCC
Confidence 45677776 899999999773211 000000 000 013679999999998752 2223333333333 445
Q ss_pred cEEEEecCCCC----CCcccccc----eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Q 005137 76 PVILTSNSNNI----TLPDSLDR----LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMHLQF 147 (712)
Q Consensus 76 PIILTCND~n~----~Lpkllsr----l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~LQf 147 (712)
+||++++.... ..+++++| ..+.|.+ +.++....|...+...|+.+++++++.|+..+ ||+|...+.|+.
T Consensus 133 ~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~l~~~l~~ 210 (324)
T 1l8q_A 133 QIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKL 210 (324)
T ss_dssp EEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHH
T ss_pred eEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHHHHHHHHH
Confidence 79999975421 22334445 4688998 99999999999999999999999999999999 999999999987
Q ss_pred Hhhc
Q 005137 148 WCQN 151 (712)
Q Consensus 148 ~s~s 151 (712)
+...
T Consensus 211 ~~~~ 214 (324)
T 1l8q_A 211 IKLK 214 (324)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6654
No 29
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.93 E-value=8.6e-06 Score=85.27 Aligned_cols=145 Identities=12% Similarity=0.007 Sum_probs=100.2
Q ss_pred ChhhHHHhhCCCcEEEEeCCCcccc----c-ccccccC---CCCCCcEEEEeCCCCCChh----h----HHHHHHHHHHH
Q 005137 7 VSLCEAAQHADDEVVEVIHIPDDEN----S-HGVMGKS---DNHVKPLILIEDVDVFFPE----D----RGFIAGIQQIA 70 (712)
Q Consensus 7 ~~~~aIAkelGydVIELNASDdR~r----n-~~v~gsl---~~~kkkLILIDEVD~Lfee----D----rGf~~AL~~Li 70 (712)
..+.++|++++..++.+|+++-... . ......+ ...++.+|+|||+|.+... + +.....+...+
T Consensus 99 ~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l 178 (355)
T 2qp9_X 99 YLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQM 178 (355)
T ss_dssp HHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHh
Confidence 3467899999999999999873221 0 0000000 1124689999999999743 1 22234444444
Q ss_pred H-----hcCCcEEEEecCCCCCCcccccc--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----cHH
Q 005137 71 E-----KAKGPVILTSNSNNITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRA----DIR 139 (712)
Q Consensus 71 e-----kTKrPIILTCND~n~~Lpkllsr--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~G----DIR 139 (712)
. ..++.||.++|.+...-+.++.| ..+.|..|+.++....|..++...+..+++..++.|+..+.| ||+
T Consensus 179 ~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~ 258 (355)
T 2qp9_X 179 NGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIA 258 (355)
T ss_dssp HHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHH
T ss_pred hcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHH
Confidence 3 23455777888865433445556 568899999999999999999888888899999999999888 999
Q ss_pred HHHHHHHHHhhc
Q 005137 140 KTIMHLQFWCQN 151 (712)
Q Consensus 140 qaLN~LQf~s~s 151 (712)
.+++.....+..
T Consensus 259 ~l~~~A~~~a~~ 270 (355)
T 2qp9_X 259 VVVKDALMQPIR 270 (355)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 998877665543
No 30
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.91 E-value=2.5e-05 Score=84.39 Aligned_cols=140 Identities=14% Similarity=0.131 Sum_probs=99.3
Q ss_pred hhHHHhhC-----CCcEEEEeCCCcccc------cc---cccccCCCCCCcEEEEeCCCCCChh---hHHHHHHHHHHHH
Q 005137 9 LCEAAQHA-----DDEVVEVIHIPDDEN------SH---GVMGKSDNHVKPLILIEDVDVFFPE---DRGFIAGIQQIAE 71 (712)
Q Consensus 9 ~~aIAkel-----GydVIELNASDdR~r------n~---~v~gsl~~~kkkLILIDEVD~Lfee---DrGf~~AL~~Lie 71 (712)
+.++|+++ |..++.+|+.+-... .. .+.... .....+|||||+|.+... ...+...+..+.+
T Consensus 147 a~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~ 225 (440)
T 2z4s_A 147 LQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKY-RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHD 225 (440)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHH-TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHh-cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHH
Confidence 45666666 888999998763211 00 000001 114689999999999752 2334444444443
Q ss_pred hcCCcEEEEecCCCC----CCcccccc----eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHH
Q 005137 72 KAKGPVILTSNSNNI----TLPDSLDR----LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIM 143 (712)
Q Consensus 72 kTKrPIILTCND~n~----~Lpkllsr----l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN 143 (712)
...+||++++.... ..+++++| ..+.|.+|+.++....|...+..+|+.+++++++.|+..+.||+|.+++
T Consensus 226 -~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 226 -SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp -TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHHH
T ss_pred -CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHH
Confidence 34579999887432 22445555 3689999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh
Q 005137 144 HLQFWCQ 150 (712)
Q Consensus 144 ~LQf~s~ 150 (712)
.|+....
T Consensus 305 ~L~~~~~ 311 (440)
T 2z4s_A 305 AIIKLLV 311 (440)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9886543
No 31
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.91 E-value=1.3e-05 Score=83.68 Aligned_cols=137 Identities=11% Similarity=0.094 Sum_probs=93.9
Q ss_pred hhhHHHhhCCCcEEEEeCCCcccc-----ccccccc---CCCCCCcEEEEeCCCCCChh--------hHHHHHHHHHHHH
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGK---SDNHVKPLILIEDVDVFFPE--------DRGFIAGIQQIAE 71 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~r-----n~~v~gs---l~~~kkkLILIDEVD~Lfee--------DrGf~~AL~~Lie 71 (712)
.+.++|+++|..++.+|+++-... ....... ....++.+|+|||+|.|... .+..+..+...+.
T Consensus 133 la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~ 212 (357)
T 3d8b_A 133 IGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLD 212 (357)
T ss_dssp HHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHh
Confidence 467899999999999999874321 0000000 01134689999999998543 1122334433333
Q ss_pred h------cCCcEEEEecCCCCCCcccccc--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----cHH
Q 005137 72 K------AKGPVILTSNSNNITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRA----DIR 139 (712)
Q Consensus 72 k------TKrPIILTCND~n~~Lpkllsr--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~G----DIR 139 (712)
. .++.||+++|.....-+.+++| ..+.|..|+.++....|..++..+++.+++..++.|+..+.| ||+
T Consensus 213 ~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~ 292 (357)
T 3d8b_A 213 GATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMT 292 (357)
T ss_dssp C----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHH
T ss_pred cccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHH
Confidence 2 2345677788765433445566 468899999999999999999999999999999999998887 666
Q ss_pred HHHHH
Q 005137 140 KTIMH 144 (712)
Q Consensus 140 qaLN~ 144 (712)
..++.
T Consensus 293 ~l~~~ 297 (357)
T 3d8b_A 293 QLCRE 297 (357)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 32
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.74 E-value=6.8e-05 Score=78.79 Aligned_cols=106 Identities=11% Similarity=0.117 Sum_probs=74.2
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHH--hcCCcEEEEecCCCCC---C-cccccc---eeeEEcCCCHHHHHHHHHH
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAE--KAKGPVILTSNSNNIT---L-PDSLDR---LEVSFTMPMPKDLLSHLQM 113 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~Lie--kTKrPIILTCND~n~~---L-pkllsr---l~IrFkrPs~~eI~srL~~ 113 (712)
+..+|+|||+|.+. ++..+..+.++.. .++.-||+|+|+...+ + ++.++| ..|.|.+++.+++...|+.
T Consensus 132 ~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~ 209 (318)
T 3te6_A 132 RKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIIT 209 (318)
T ss_dssp CEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHH
T ss_pred CceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHH
Confidence 45799999999998 3333333333332 3455577778886532 1 122345 4699999999999998876
Q ss_pred HHHHc--C----------------------------C-----CCCHHHHHHHHH---HcCCcHHHHHHHHHHHhh
Q 005137 114 ICAAE--K----------------------------V-----ELQQHLLVQLIE---SCRADIRKTIMHLQFWCQ 150 (712)
Q Consensus 114 Ic~~E--G----------------------------i-----kId~~~L~~LI~---~S~GDIRqaLN~LQf~s~ 150 (712)
-+... | + .+++++|+.++. ...||+|++|+.|.....
T Consensus 210 Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~ 284 (318)
T 3te6_A 210 RLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEAAVE 284 (318)
T ss_dssp HHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHH
T ss_pred HHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHHHHH
Confidence 65442 2 1 479999999988 679999999999986543
No 33
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.72 E-value=3.9e-05 Score=75.94 Aligned_cols=145 Identities=14% Similarity=0.138 Sum_probs=95.2
Q ss_pred hhhHHHhhCCCcEEEEeCCCccccc-----ccccc---cCCCCCCcEEEEeCCCCCCh--------hhHHHHHHHHHHHH
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDENS-----HGVMG---KSDNHVKPLILIEDVDVFFP--------EDRGFIAGIQQIAE 71 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~rn-----~~v~g---sl~~~kkkLILIDEVD~Lfe--------eDrGf~~AL~~Lie 71 (712)
.+.++|++++..++++++++-.... ..... ......+.+|+|||+|.+.. ++......+..+++
T Consensus 67 la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~ 146 (285)
T 3h4m_A 67 LAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLA 146 (285)
T ss_dssp HHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHH
Confidence 4678899999999999998743210 00000 00112457999999999842 34455566666665
Q ss_pred h-------cCCcEEEEecCCCCCCccccc--c--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----
Q 005137 72 K-------AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRA---- 136 (712)
Q Consensus 72 k-------TKrPIILTCND~n~~Lpklls--r--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~G---- 136 (712)
. .++.||+++|.....-+.++. | ..+.|..|+.++....++..+...++.. +..+..|+..+.|
T Consensus 147 ~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~l~~~~~g~~~~ 225 (285)
T 3h4m_A 147 EMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAE-DVNLEEIAKMTEGCVGA 225 (285)
T ss_dssp HHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCT-TCCHHHHHHHCTTCCHH
T ss_pred HhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCC-cCCHHHHHHHcCCCCHH
Confidence 4 234578888876443333444 4 4689999999999999988877665542 2235566665544
Q ss_pred cHHHHHHHHHHHhhcCC
Q 005137 137 DIRKTIMHLQFWCQNKG 153 (712)
Q Consensus 137 DIRqaLN~LQf~s~s~~ 153 (712)
||+..++.....+...+
T Consensus 226 ~i~~l~~~a~~~a~~~~ 242 (285)
T 3h4m_A 226 ELKAICTEAGMNAIREL 242 (285)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999998888776543
No 34
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.69 E-value=1.8e-05 Score=81.19 Aligned_cols=143 Identities=12% Similarity=-0.001 Sum_probs=97.0
Q ss_pred ChhhHHHhhCCCcEEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCChhh--------HHHHHHHHHHH
Q 005137 7 VSLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFPED--------RGFIAGIQQIA 70 (712)
Q Consensus 7 ~~~~aIAkelGydVIELNASDdR~r-----n~~v~gsl---~~~kkkLILIDEVD~LfeeD--------rGf~~AL~~Li 70 (712)
..+.++|++++..++.+|+++-... ...+...+ ...++.+|+|||+|.|.... +..+..+...+
T Consensus 66 ~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l 145 (322)
T 3eie_A 66 YLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQM 145 (322)
T ss_dssp HHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHh
Confidence 3567899999999999999773221 00000000 11346799999999996531 12234444444
Q ss_pred Hh-----cCCcEEEEecCCCCCCcccccc--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----cHH
Q 005137 71 EK-----AKGPVILTSNSNNITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRA----DIR 139 (712)
Q Consensus 71 ek-----TKrPIILTCND~n~~Lpkllsr--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~G----DIR 139 (712)
.. ..+-||.++|.+...-+.+++| ..|.|..|+.++....++..+...+..+++..++.|+..+.| ||+
T Consensus 146 ~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~ 225 (322)
T 3eie_A 146 NGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIA 225 (322)
T ss_dssp GGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHH
T ss_pred ccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHH
Confidence 32 2344666777765433444556 578899999999999999999988889999999999998776 898
Q ss_pred HHHHHHHHHh
Q 005137 140 KTIMHLQFWC 149 (712)
Q Consensus 140 qaLN~LQf~s 149 (712)
..++.....+
T Consensus 226 ~l~~~a~~~a 235 (322)
T 3eie_A 226 VVVKDALMQP 235 (322)
T ss_dssp HHHHHHTTHH
T ss_pred HHHHHHHHHH
Confidence 8887654443
No 35
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.63 E-value=4.7e-05 Score=76.92 Aligned_cols=107 Identities=16% Similarity=0.196 Sum_probs=80.8
Q ss_pred CCcEEEEeCCCCCChh-hHHHHHHHHHHHH---hcCCcEEEEecCCC---CCCcccccc---eeeEEcCCCHHHHHHHHH
Q 005137 43 VKPLILIEDVDVFFPE-DRGFIAGIQQIAE---KAKGPVILTSNSNN---ITLPDSLDR---LEVSFTMPMPKDLLSHLQ 112 (712)
Q Consensus 43 kkkLILIDEVD~Lfee-DrGf~~AL~~Lie---kTKrPIILTCND~n---~~Lpkllsr---l~IrFkrPs~~eI~srL~ 112 (712)
++.+|+|||+|.+... +...+..+...+. ..+..+|+++|+.. ...+..+++ ..|.|.+++.+++...|.
T Consensus 128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~ 207 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILT 207 (386)
T ss_dssp SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHH
T ss_pred CeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHH
Confidence 3679999999999754 3566777777773 44677899999853 112223333 479999999999999999
Q ss_pred HHHHHc--CCCCCHHHHHHHHHHcC---CcHHHHHHHHHHHh
Q 005137 113 MICAAE--KVELQQHLLVQLIESCR---ADIRKTIMHLQFWC 149 (712)
Q Consensus 113 ~Ic~~E--GikId~~~L~~LI~~S~---GDIRqaLN~LQf~s 149 (712)
..+... +..+++++++.|+..+. ||+|.+++.|+...
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~ 249 (386)
T 2qby_A 208 KRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSG 249 (386)
T ss_dssp HHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 887653 36889999999999988 99999999887654
No 36
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.61 E-value=0.00022 Score=69.18 Aligned_cols=143 Identities=13% Similarity=0.048 Sum_probs=85.7
Q ss_pred hhhHHHhhCCCcEEEEeCCCccccc-----ccccccC---CCCCCcEEEEeCCCCCChhh---------HHHHHHHHHHH
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDENS-----HGVMGKS---DNHVKPLILIEDVDVFFPED---------RGFIAGIQQIA 70 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~rn-----~~v~gsl---~~~kkkLILIDEVD~LfeeD---------rGf~~AL~~Li 70 (712)
.+.++|++++..++.+++++-.... ......+ ....+.+|+|||+|.+.... ......+..++
T Consensus 55 la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll 134 (262)
T 2qz4_A 55 LAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLL 134 (262)
T ss_dssp HHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHH
T ss_pred HHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHH
Confidence 4678899999999999998843210 0000000 01246799999999995421 11123334443
Q ss_pred H---h----cCCcEEEEecCCCCCCccccc--c--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC--
Q 005137 71 E---K----AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHL-LVQLIESCRA-- 136 (712)
Q Consensus 71 e---k----TKrPIILTCND~n~~Lpklls--r--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~-L~~LI~~S~G-- 136 (712)
. . .++.||.++|.....-+.++. | ..+.|..|+.++....++..+...++..+... +..|...+.|
T Consensus 135 ~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~ 214 (262)
T 2qz4_A 135 VEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFS 214 (262)
T ss_dssp HHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCC
T ss_pred HHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCC
Confidence 3 2 234577777775422233343 4 57889999999999999999999999888764 4677765543
Q ss_pred --cHHHHHHHHHHHhh
Q 005137 137 --DIRKTIMHLQFWCQ 150 (712)
Q Consensus 137 --DIRqaLN~LQf~s~ 150 (712)
||+..++.....+.
T Consensus 215 ~~~l~~l~~~a~~~a~ 230 (262)
T 2qz4_A 215 GADIANICNEAALHAA 230 (262)
T ss_dssp HHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHH
Confidence 77777776655443
No 37
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.58 E-value=8e-05 Score=80.41 Aligned_cols=144 Identities=10% Similarity=0.020 Sum_probs=96.3
Q ss_pred ChhhHHHhhC-CCcEEEEeCCCcccc----c-ccccccC---CCCCCcEEEEeCCCCCChh----hHH-HHHHHHHHHH-
Q 005137 7 VSLCEAAQHA-DDEVVEVIHIPDDEN----S-HGVMGKS---DNHVKPLILIEDVDVFFPE----DRG-FIAGIQQIAE- 71 (712)
Q Consensus 7 ~~~~aIAkel-GydVIELNASDdR~r----n-~~v~gsl---~~~kkkLILIDEVD~Lfee----DrG-f~~AL~~Lie- 71 (712)
..+.++|+++ +..++.+|+++-... . ..+...+ ....+.+|+|||+|.++.. +.+ ....+..++.
T Consensus 182 ~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~ 261 (444)
T 2zan_A 182 YLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQ 261 (444)
T ss_dssp HHHHHHHHHCCSSEEEEECCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHH
Confidence 3467899999 899999999884321 0 0000000 1134689999999999542 111 1222333332
Q ss_pred -------hcCCcEEEEecCCCCCCcccccc--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----cH
Q 005137 72 -------KAKGPVILTSNSNNITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRA----DI 138 (712)
Q Consensus 72 -------kTKrPIILTCND~n~~Lpkllsr--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~G----DI 138 (712)
..++.||.++|.+...-+.+++| ..+.|..|+..+....+..++...+..+++..++.|+..+.| ||
T Consensus 262 l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl 341 (444)
T 2zan_A 262 MQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADI 341 (444)
T ss_dssp TTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHH
T ss_pred HhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHH
Confidence 23456888888876544556667 468889999999999998888888888899999999998877 99
Q ss_pred HHHHHHHHHHhh
Q 005137 139 RKTIMHLQFWCQ 150 (712)
Q Consensus 139 RqaLN~LQf~s~ 150 (712)
+.++...-..+.
T Consensus 342 ~~l~~~a~~~a~ 353 (444)
T 2zan_A 342 SIIVRDALMQPV 353 (444)
T ss_dssp HHHHHHHHTHHH
T ss_pred HHHHHHHHHHHH
Confidence 888876655443
No 38
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.57 E-value=0.00022 Score=73.75 Aligned_cols=143 Identities=12% Similarity=0.063 Sum_probs=94.9
Q ss_pred ChhhHHHhhC-CCcEEEEeCCCcccc----c-ccccccC---CCCCCcEEEEeCCCCCChh----h----HHHHHHHHHH
Q 005137 7 VSLCEAAQHA-DDEVVEVIHIPDDEN----S-HGVMGKS---DNHVKPLILIEDVDVFFPE----D----RGFIAGIQQI 69 (712)
Q Consensus 7 ~~~~aIAkel-GydVIELNASDdR~r----n-~~v~gsl---~~~kkkLILIDEVD~Lfee----D----rGf~~AL~~L 69 (712)
..+.++|+++ +..++.+++++-..+ . ..+...+ ...++.+|+|||+|.+... + +.....+...
T Consensus 60 ~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ 139 (322)
T 1xwi_A 60 YLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQ 139 (322)
T ss_dssp HHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHH
Confidence 3567899999 899999999874321 0 0000000 1134679999999999432 1 1222333333
Q ss_pred HHh-----cCCcEEEEecCCCCCCcccccc--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----cH
Q 005137 70 AEK-----AKGPVILTSNSNNITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRA----DI 138 (712)
Q Consensus 70 iek-----TKrPIILTCND~n~~Lpkllsr--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~G----DI 138 (712)
+.. .++-||.++|.+...-+.++.| ..+.|..|+.++....|...+...+..+++..++.|+..+.| ||
T Consensus 140 ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl 219 (322)
T 1xwi_A 140 MQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADI 219 (322)
T ss_dssp HHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHH
T ss_pred HhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHH
Confidence 332 2344667788876544455566 568899999999999999988888888899999999997655 78
Q ss_pred HHHHHHHHHHh
Q 005137 139 RKTIMHLQFWC 149 (712)
Q Consensus 139 RqaLN~LQf~s 149 (712)
+..+......+
T Consensus 220 ~~l~~~A~~~a 230 (322)
T 1xwi_A 220 SIIVRDALMQP 230 (322)
T ss_dssp HHHHHHHHTHH
T ss_pred HHHHHHHHHHH
Confidence 77776654433
No 39
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.51 E-value=5.1e-05 Score=75.22 Aligned_cols=139 Identities=10% Similarity=0.134 Sum_probs=86.9
Q ss_pred hhhHHHhhCCCcEEEEeCCCcccc-c-----ccccccC---CCCCCcEEEEeCCCCCCh------h-hHHHHHHHHHHHH
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDEN-S-----HGVMGKS---DNHVKPLILIEDVDVFFP------E-DRGFIAGIQQIAE 71 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~r-n-----~~v~gsl---~~~kkkLILIDEVD~Lfe------e-DrGf~~AL~~Lie 71 (712)
.+.++|++.|+.++++|++++... . ......+ ...+..+|+|||+|.|+. . ...++.+|..+++
T Consensus 80 la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~ 159 (272)
T 1d2n_A 80 LAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLK 159 (272)
T ss_dssp HHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhc
Confidence 467889999999999999874311 0 0000000 113468999999999842 1 3445667777665
Q ss_pred hc---CCc--EEEEecCCCCCCc--ccccc--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-----c
Q 005137 72 KA---KGP--VILTSNSNNITLP--DSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRA-----D 137 (712)
Q Consensus 72 kT---KrP--IILTCND~n~~Lp--kllsr--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~G-----D 137 (712)
.. ..+ ||.++|.... +. .++++ ..|.|.+++.. ..+..|+..++ .++++.+..|+..+.| |
T Consensus 160 ~~~~~~~~~~ii~ttn~~~~-l~~~~l~~rf~~~i~~p~l~~r---~~i~~i~~~~~-~~~~~~~~~l~~~~~g~~~~g~ 234 (272)
T 1d2n_A 160 KAPPQGRKLLIIGTTSRKDV-LQEMEMLNAFSTTIHVPNIATG---EQLLEALELLG-NFKDKERTTIAQQVKGKKVWIG 234 (272)
T ss_dssp CCCSTTCEEEEEEEESCHHH-HHHTTCTTTSSEEEECCCEEEH---HHHHHHHHHHT-CSCHHHHHHHHHHHTTSEEEEC
T ss_pred CccCCCCCEEEEEecCChhh-cchhhhhcccceEEcCCCccHH---HHHHHHHHhcC-CCCHHHHHHHHHHhcCCCcccc
Confidence 42 223 5666666431 22 23455 44566544441 22444444443 5689999999999988 9
Q ss_pred HHHHHHHHHHHhhc
Q 005137 138 IRKTIMHLQFWCQN 151 (712)
Q Consensus 138 IRqaLN~LQf~s~s 151 (712)
+|+++|.++.....
T Consensus 235 ir~l~~~l~~a~~~ 248 (272)
T 1d2n_A 235 IKKLLMLIEMSLQM 248 (272)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999987653
No 40
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.27 E-value=0.00029 Score=80.21 Aligned_cols=139 Identities=14% Similarity=0.106 Sum_probs=95.6
Q ss_pred hhhHHHhhCCCcEEEEeCCCcccc---c---c----cc--------cccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHH
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDEN---S---H----GV--------MGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQI 69 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~r---n---~----~v--------~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~L 69 (712)
.+.++|+.+|..++.+|.++..+. . . ++ .+.+......+|+|||+|.+..+ .+..|.++
T Consensus 504 la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~---~~~~Ll~~ 580 (758)
T 1r6b_X 504 VTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPD---VFNILLQV 580 (758)
T ss_dssp HHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHH---HHHHHHHH
T ss_pred HHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccCHH---HHHHHHHH
Confidence 456889999999999999884332 0 0 10 00011124689999999998653 67788888
Q ss_pred HHhcC-------------CcEEEEecCCC-------------------------CCCcccccc--eeeEEcCCCHHHHHH
Q 005137 70 AEKAK-------------GPVILTSNSNN-------------------------ITLPDSLDR--LEVSFTMPMPKDLLS 109 (712)
Q Consensus 70 iekTK-------------rPIILTCND~n-------------------------~~Lpkllsr--l~IrFkrPs~~eI~s 109 (712)
++..+ +-||+|+|... ...+.+++| ..|.|.+|+.+++..
T Consensus 581 le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~ 660 (758)
T 1r6b_X 581 MDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQ 660 (758)
T ss_dssp HHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHH
T ss_pred hcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHH
Confidence 88632 33899998743 122345566 568999999999888
Q ss_pred HHHHHHHHc---------CCCCCHHHHHHHHHHc---CCcHHHHHHHHHHHh
Q 005137 110 HLQMICAAE---------KVELQQHLLVQLIESC---RADIRKTIMHLQFWC 149 (712)
Q Consensus 110 rL~~Ic~~E---------GikId~~~L~~LI~~S---~GDIRqaLN~LQf~s 149 (712)
.+...+... ++.+++++++.|+... ++++|...+.++...
T Consensus 661 i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~ 712 (758)
T 1r6b_X 661 VVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNL 712 (758)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHH
Confidence 888776532 3578999999999876 555666666665443
No 41
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.25 E-value=0.0016 Score=67.29 Aligned_cols=137 Identities=8% Similarity=-0.000 Sum_probs=90.6
Q ss_pred hhhHHHhhCCCcEEEEeCCCcccccccccccC-CCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhcC------------
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDENSHGVMGKS-DNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAK------------ 74 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~rn~~v~gsl-~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekTK------------ 74 (712)
.+.++|+++|..+...++........ ....+ .-.+..++++||+|.++... ...+...++...
T Consensus 67 La~~ia~~l~~~~~~~sg~~~~~~~~-l~~~~~~~~~~~v~~iDE~~~l~~~~---~e~L~~~~~~~~~~i~~~~~~~~~ 142 (334)
T 1in4_A 67 LAHIIASELQTNIHVTSGPVLVKQGD-MAAILTSLERGDVLFIDEIHRLNKAV---EELLYSAIEDFQIDIMIGKGPSAK 142 (334)
T ss_dssp HHHHHHHHHTCCEEEEETTTCCSHHH-HHHHHHHCCTTCEEEEETGGGCCHHH---HHHHHHHHHTSCCCC---------
T ss_pred HHHHHHHHhCCCEEEEechHhcCHHH-HHHHHHHccCCCEEEEcchhhcCHHH---HHHHHHHHHhcccceeeccCcccc
Confidence 35678888887776666543211000 00000 01245799999999998632 233333333221
Q ss_pred --------CcEEEEecCCCCCCcccccc--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHH
Q 005137 75 --------GPVILTSNSNNITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKTIMH 144 (712)
Q Consensus 75 --------rPIILTCND~n~~Lpkllsr--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~ 144 (712)
.-+|..+|.....-+..++| ..+.|.+++.+++...|..++...|+.++++++..|+..+.||.|.+++.
T Consensus 143 ~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 143 SIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp ------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred cccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHH
Confidence 12333344443222335566 46789999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 005137 145 LQFW 148 (712)
Q Consensus 145 LQf~ 148 (712)
|+..
T Consensus 223 l~~~ 226 (334)
T 1in4_A 223 TKRV 226 (334)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8743
No 42
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.24 E-value=0.00044 Score=70.37 Aligned_cols=131 Identities=15% Similarity=0.106 Sum_probs=81.9
Q ss_pred ChhhHHHhhCCCcEEEEeCCCcccc---------cccccc---cCCCCCCcEEEEeCCCCCChhh----------HHHHH
Q 005137 7 VSLCEAAQHADDEVVEVIHIPDDEN---------SHGVMG---KSDNHVKPLILIEDVDVFFPED----------RGFIA 64 (712)
Q Consensus 7 ~~~~aIAkelGydVIELNASDdR~r---------n~~v~g---sl~~~kkkLILIDEVD~LfeeD----------rGf~~ 64 (712)
..+.++|+++|..++.+++++-... ...+.. ......+.+|+|||+|.+.... +....
T Consensus 51 ~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~ 130 (293)
T 3t15_A 51 FQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 130 (293)
T ss_dssp HHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHH
Confidence 3567899999999999999873221 000000 0013357899999999987621 12346
Q ss_pred HHHHHHH---------------hcCCcEEEEecCCCCCCccccc--ceeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHH
Q 005137 65 GIQQIAE---------------KAKGPVILTSNSNNITLPDSLD--RLEVSFTMPMPKDLLSHLQMICAAEKVELQQHLL 127 (712)
Q Consensus 65 AL~~Lie---------------kTKrPIILTCND~n~~Lpklls--rl~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L 127 (712)
+|.+++. ..+++||+|+|+....-+.++. |....+..|+.++....+..++..+++ +.+.+
T Consensus 131 ~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~P~~~~r~~Il~~~~~~~~~--~~~~l 208 (293)
T 3t15_A 131 TLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNV--PAEDV 208 (293)
T ss_dssp HHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEECCCHHHHHHHHHHHHGGGCC--CHHHH
T ss_pred HHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeCcCHHHHHHHHHHhccCCCC--CHHHH
Confidence 7777764 2468899999998653333442 454444478999988888888776654 57777
Q ss_pred HHHHHH-cCCcHH
Q 005137 128 VQLIES-CRADIR 139 (712)
Q Consensus 128 ~~LI~~-S~GDIR 139 (712)
..+... ++.||.
T Consensus 209 ~~~~~~~~~~~l~ 221 (293)
T 3t15_A 209 VKIVDNFPGQSID 221 (293)
T ss_dssp HHHHHHSCSCCHH
T ss_pred HHHhCCCCcccHH
Confidence 777766 456664
No 43
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.13 E-value=0.00047 Score=68.71 Aligned_cols=105 Identities=18% Similarity=0.151 Sum_probs=77.0
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhcC----------Cc---EEEEecCC-------------------------
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKAK----------GP---VILTSNSN------------------------- 84 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekTK----------rP---IILTCND~------------------------- 84 (712)
...+|+|||+|.+... .+.+|.++++... .+ ||+|+|..
T Consensus 119 ~~~vl~lDEi~~l~~~---~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~ 195 (311)
T 4fcw_A 119 PYSVILFDAIEKAHPD---VFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVL 195 (311)
T ss_dssp SSEEEEEETGGGSCHH---HHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHH
T ss_pred CCeEEEEeChhhcCHH---HHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHH
Confidence 3479999999999654 6678888887632 23 99999982
Q ss_pred -CCCCcccccc--eeeEEcCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHcC---CcHHHHHHHHHHHh
Q 005137 85 -NITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAAE---------KVELQQHLLVQLIESCR---ADIRKTIMHLQFWC 149 (712)
Q Consensus 85 -n~~Lpkllsr--l~IrFkrPs~~eI~srL~~Ic~~E---------GikId~~~L~~LI~~S~---GDIRqaLN~LQf~s 149 (712)
....+.+++| ..+.|.+|+.+++...+..++... .+.+++++++.|+...- |++|..-+.++...
T Consensus 196 ~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~ 275 (311)
T 4fcw_A 196 QQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQREL 275 (311)
T ss_dssp HHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHT
T ss_pred HHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHH
Confidence 1223445566 468899999988888887765442 45789999999999764 88888888877655
Q ss_pred h
Q 005137 150 Q 150 (712)
Q Consensus 150 ~ 150 (712)
.
T Consensus 276 ~ 276 (311)
T 4fcw_A 276 E 276 (311)
T ss_dssp H
T ss_pred H
Confidence 4
No 44
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.12 E-value=0.00065 Score=70.65 Aligned_cols=144 Identities=13% Similarity=0.135 Sum_probs=94.1
Q ss_pred hhhHHHhhCCCcEEEEeCCCcccc-------ccccc-------ccCCCCCCcEEEEeCCCCCChh--------hH---HH
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDEN-------SHGVM-------GKSDNHVKPLILIEDVDVFFPE--------DR---GF 62 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~r-------n~~v~-------gsl~~~kkkLILIDEVD~Lfee--------Dr---Gf 62 (712)
.+.++|+.+|..++.+|++.-... ..... +.+......+|+|||+|.+... |. +.
T Consensus 88 la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~ 167 (376)
T 1um8_A 88 MAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGV 167 (376)
T ss_dssp HHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHH
T ss_pred HHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHH
Confidence 467899999999999998763210 00000 0011124689999999999764 11 27
Q ss_pred HHHHHHHHHh-----------------------cCCcEEEEecCC-----------------------------------
Q 005137 63 IAGIQQIAEK-----------------------AKGPVILTSNSN----------------------------------- 84 (712)
Q Consensus 63 ~~AL~~Liek-----------------------TKrPIILTCND~----------------------------------- 84 (712)
+.+|.++++. +++.+|+++|-.
T Consensus 168 ~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~ 247 (376)
T 1um8_A 168 QQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQ 247 (376)
T ss_dssp HHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCC
T ss_pred HHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcC
Confidence 7888888873 334567776620
Q ss_pred ------CCCCcccccc--eeeEEcCCCHHHHHHHHH----HHHH-------H--cCCCCCHHHHHHHHHHcC---CcHHH
Q 005137 85 ------NITLPDSLDR--LEVSFTMPMPKDLLSHLQ----MICA-------A--EKVELQQHLLVQLIESCR---ADIRK 140 (712)
Q Consensus 85 ------n~~Lpkllsr--l~IrFkrPs~~eI~srL~----~Ic~-------~--EGikId~~~L~~LI~~S~---GDIRq 140 (712)
....+.++.| ..+.|.+++.+++...+. .++. . .++.+++++++.|+..+. |++|.
T Consensus 248 ~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~ 327 (376)
T 1um8_A 248 THDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARG 327 (376)
T ss_dssp HHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGG
T ss_pred HHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHH
Confidence 0112334455 568999999998888885 2221 1 246789999999999865 99999
Q ss_pred HHHHHHHHhhc
Q 005137 141 TIMHLQFWCQN 151 (712)
Q Consensus 141 aLN~LQf~s~s 151 (712)
..+.++.....
T Consensus 328 L~~~le~~~~~ 338 (376)
T 1um8_A 328 LRAIIEDFCLD 338 (376)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999876654
No 45
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.06 E-value=0.0025 Score=62.72 Aligned_cols=140 Identities=12% Similarity=0.109 Sum_probs=89.2
Q ss_pred hhhHHHhhCC---CcEEEEeCCCcccc---c---c----cccc-------cCCCCCCcEEEEeCCCCCChhhHHHHHHHH
Q 005137 8 SLCEAAQHAD---DEVVEVIHIPDDEN---S---H----GVMG-------KSDNHVKPLILIEDVDVFFPEDRGFIAGIQ 67 (712)
Q Consensus 8 ~~~aIAkelG---ydVIELNASDdR~r---n---~----~v~g-------sl~~~kkkLILIDEVD~LfeeDrGf~~AL~ 67 (712)
.+.++++..+ ..++.+|+++-... . . ...| .+......+|+|||+|.+..+ .+.+|.
T Consensus 45 la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~---~q~~Ll 121 (265)
T 2bjv_A 45 IASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMM---VQEKLL 121 (265)
T ss_dssp HHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSCHH---HHHHHH
T ss_pred HHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCcccccccccccccchhhhcCCcEEEEechHhcCHH---HHHHHH
Confidence 3456666654 67999998873210 0 0 0111 111123579999999999764 446677
Q ss_pred HHHHh-------------cCCcEEEEecCCC-------CCCcccccce-eeEEcCCCH----HHHH----HHHHHHHHHc
Q 005137 68 QIAEK-------------AKGPVILTSNSNN-------ITLPDSLDRL-EVSFTMPMP----KDLL----SHLQMICAAE 118 (712)
Q Consensus 68 ~Liek-------------TKrPIILTCND~n-------~~Lpkllsrl-~IrFkrPs~----~eI~----srL~~Ic~~E 118 (712)
++++. ..++||+++|... ..-+.+++|+ .+.+.-|+. +++. .+|..++...
T Consensus 122 ~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~ 201 (265)
T 2bjv_A 122 RVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREI 201 (265)
T ss_dssp HHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHh
Confidence 77764 2567999999741 1123455663 344444443 3333 3456667777
Q ss_pred CC----CCCHHHHHHHHHHc-CCcHHHHHHHHHHHhh
Q 005137 119 KV----ELQQHLLVQLIESC-RADIRKTIMHLQFWCQ 150 (712)
Q Consensus 119 Gi----kId~~~L~~LI~~S-~GDIRqaLN~LQf~s~ 150 (712)
|. .+++++++.|..+. .||+|+..|.++....
T Consensus 202 ~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~ 238 (265)
T 2bjv_A 202 KLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVY 238 (265)
T ss_dssp TCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHH
T ss_pred CCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 76 68999999998876 8999999999987654
No 46
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.97 E-value=0.0024 Score=64.47 Aligned_cols=102 Identities=19% Similarity=0.241 Sum_probs=69.9
Q ss_pred CcEEEEeCCCCCChhhHHHHHHHHHHHHhc---------------CCcEEEEecCCC-CCCcccccc--eeeEEcCCCHH
Q 005137 44 KPLILIEDVDVFFPEDRGFIAGIQQIAEKA---------------KGPVILTSNSNN-ITLPDSLDR--LEVSFTMPMPK 105 (712)
Q Consensus 44 kkLILIDEVD~LfeeDrGf~~AL~~LiekT---------------KrPIILTCND~n-~~Lpkllsr--l~IrFkrPs~~ 105 (712)
..+|+|||+|.+... .+.+|.++++.. +.-||.++|... ...+.+++| ..+.|..|+..
T Consensus 145 ~~vl~iDEi~~l~~~---~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~ 221 (350)
T 1g8p_A 145 RGYLYIDECNLLEDH---IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDV 221 (350)
T ss_dssp TEEEEETTGGGSCHH---HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSH
T ss_pred CCEEEEeChhhCCHH---HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcH
Confidence 579999999999765 345777777753 334566667533 334556777 45888888544
Q ss_pred HHH-HHHHH-------------------------H----HHHcCCCCCHHHHHHHHHHcCC----cHHHHHHHHHHH
Q 005137 106 DLL-SHLQM-------------------------I----CAAEKVELQQHLLVQLIESCRA----DIRKTIMHLQFW 148 (712)
Q Consensus 106 eI~-srL~~-------------------------I----c~~EGikId~~~L~~LI~~S~G----DIRqaLN~LQf~ 148 (712)
+.. ..+.. | +..+++.+++++++.|+..+.+ ++|.+++.|+..
T Consensus 222 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a 298 (350)
T 1g8p_A 222 ETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSA 298 (350)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Confidence 222 22222 2 3445789999999999988776 899999988754
No 47
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.004 Score=67.74 Aligned_cols=143 Identities=16% Similarity=0.210 Sum_probs=90.1
Q ss_pred ChhhHHHhhCCCcEEEEeCCCcccc----c-ccccccC---CCCCCcEEEEeCCCCCChh--------hHHHHHHHHHHH
Q 005137 7 VSLCEAAQHADDEVVEVIHIPDDEN----S-HGVMGKS---DNHVKPLILIEDVDVFFPE--------DRGFIAGIQQIA 70 (712)
Q Consensus 7 ~~~~aIAkelGydVIELNASDdR~r----n-~~v~gsl---~~~kkkLILIDEVD~Lfee--------DrGf~~AL~~Li 70 (712)
+.+.++|+++|..++.+++++-..+ + ..+...+ ....+.+|+|||+|.++.. +......+.+++
T Consensus 197 llAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL 276 (405)
T 4b4t_J 197 LLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELL 276 (405)
T ss_dssp HHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHH
Confidence 5678999999999999999984322 0 0000000 1235789999999999642 222334444544
Q ss_pred Hh-------cCCcEEEEecCCCCCCccccc--c--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc----
Q 005137 71 EK-------AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQH-LLVQLIESC---- 134 (712)
Q Consensus 71 ek-------TKrPIILTCND~n~~Lpklls--r--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~-~L~~LI~~S---- 134 (712)
.. ..+-||.++|.+...=+.++. | ..|.|..|+.++-...|+..+.. +.++++ .++.|+..+
T Consensus 277 ~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~--~~l~~dvdl~~lA~~t~G~S 354 (405)
T 4b4t_J 277 NQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRK--MNLTRGINLRKVAEKMNGCS 354 (405)
T ss_dssp HHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT--SBCCSSCCHHHHHHHCCSCC
T ss_pred HhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcC--CCCCccCCHHHHHHHCCCCC
Confidence 42 233467788887653333443 4 67999999988877777665544 444332 367777765
Q ss_pred CCcHHHHHHHHHHHhhc
Q 005137 135 RADIRKTIMHLQFWCQN 151 (712)
Q Consensus 135 ~GDIRqaLN~LQf~s~s 151 (712)
+.||+..++.-...+..
T Consensus 355 GADi~~l~~eA~~~Air 371 (405)
T 4b4t_J 355 GADVKGVCTEAGMYALR 371 (405)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45999998876665543
No 48
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.94 E-value=0.0044 Score=67.87 Aligned_cols=144 Identities=16% Similarity=0.176 Sum_probs=89.2
Q ss_pred ChhhHHHhhCCCcEEEEeCCCcccc----c-ccccccC---CCCCCcEEEEeCCCCCChh--------hHHHHHHHHHHH
Q 005137 7 VSLCEAAQHADDEVVEVIHIPDDEN----S-HGVMGKS---DNHVKPLILIEDVDVFFPE--------DRGFIAGIQQIA 70 (712)
Q Consensus 7 ~~~~aIAkelGydVIELNASDdR~r----n-~~v~gsl---~~~kkkLILIDEVD~Lfee--------DrGf~~AL~~Li 70 (712)
+.+.++|+++|..++.+++++-..+ + ..+...+ ....+.+|+|||+|.++.. ++.....+..++
T Consensus 230 llAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL 309 (437)
T 4b4t_L 230 LLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELL 309 (437)
T ss_dssp HHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHH
Confidence 4678999999999999999984432 0 0000000 1135789999999999631 232333444444
Q ss_pred Hh-------cCCcEEEEecCCCCCCccccc--c--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----
Q 005137 71 EK-------AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCR---- 135 (712)
Q Consensus 71 ek-------TKrPIILTCND~n~~Lpklls--r--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~---- 135 (712)
.. ..+-||.++|.+...=+.++. | ..|.|..|+...-...++..+....+. ++-.++.|+..+.
T Consensus 310 ~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~~t~G~sG 388 (437)
T 4b4t_L 310 TQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDGFNG 388 (437)
T ss_dssp HHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHHTCCSCCH
T ss_pred HHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhCCCCCH
Confidence 32 245688888987643233433 2 568899999887777776555543332 1223677777654
Q ss_pred CcHHHHHHHHHHHhhc
Q 005137 136 ADIRKTIMHLQFWCQN 151 (712)
Q Consensus 136 GDIRqaLN~LQf~s~s 151 (712)
.||+.+++.--+.+..
T Consensus 389 ADi~~l~~eA~~~air 404 (437)
T 4b4t_L 389 ADIRNCATEAGFFAIR 404 (437)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5999999876555543
No 49
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.90 E-value=0.0013 Score=72.94 Aligned_cols=143 Identities=15% Similarity=0.176 Sum_probs=90.4
Q ss_pred hhhHHHhhCCCcEEEEeCCCcccc-------ccc---ccccC------CCCCCcEEEEeCCCCCChhhHH-HHHHHHHHH
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDEN-------SHG---VMGKS------DNHVKPLILIEDVDVFFPEDRG-FIAGIQQIA 70 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~r-------n~~---v~gsl------~~~kkkLILIDEVD~LfeeDrG-f~~AL~~Li 70 (712)
.+.++|+.++...+++|.+..... ..+ ..+.+ ......+|+|||+|.+....+| .+.+|.+++
T Consensus 124 lar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~l 203 (543)
T 3m6a_A 124 LAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVL 203 (543)
T ss_dssp HHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGT
T ss_pred HHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHH
Confidence 456788899999999998773210 011 00100 1123459999999999875332 345666665
Q ss_pred Hh-----------------cCCcEEEEecCCCCCCcccccc-eeeEEcCCCHHHHHHHHHHHH-----HHc-----CCCC
Q 005137 71 EK-----------------AKGPVILTSNSNNITLPDSLDR-LEVSFTMPMPKDLLSHLQMIC-----AAE-----KVEL 122 (712)
Q Consensus 71 ek-----------------TKrPIILTCND~n~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic-----~~E-----GikI 122 (712)
.. .++-||+|+|.....-+.+++| ..|.|..|+.++....+.... ... ++.+
T Consensus 204 d~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i 283 (543)
T 3m6a_A 204 DPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQL 283 (543)
T ss_dssp CTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEE
T ss_pred hhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccC
Confidence 32 3456888889877544567777 678999999988877777654 223 4578
Q ss_pred CHHHHHHHHHHcC--CcHHHHHHHHHHHhh
Q 005137 123 QQHLLVQLIESCR--ADIRKTIMHLQFWCQ 150 (712)
Q Consensus 123 d~~~L~~LI~~S~--GDIRqaLN~LQf~s~ 150 (712)
+++++..|+.... +.+|..-+.++..+.
T Consensus 284 ~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~ 313 (543)
T 3m6a_A 284 RDQAILDIIRYYTREAGVRSLERQLAAICR 313 (543)
T ss_dssp CHHHHHHHHHHHCCCSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCChhhchhHHHHHHHHHHH
Confidence 9999999988554 677777666665443
No 50
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.84 E-value=0.00031 Score=71.38 Aligned_cols=145 Identities=14% Similarity=0.096 Sum_probs=91.6
Q ss_pred ChhhHHHhhCCCcEEEEeCCCcccc----c-ccccccC---CCCCCcEEEEeCCCCCChhh-----------HHHHHHHH
Q 005137 7 VSLCEAAQHADDEVVEVIHIPDDEN----S-HGVMGKS---DNHVKPLILIEDVDVFFPED-----------RGFIAGIQ 67 (712)
Q Consensus 7 ~~~~aIAkelGydVIELNASDdR~r----n-~~v~gsl---~~~kkkLILIDEVD~LfeeD-----------rGf~~AL~ 67 (712)
..+.++|++++..++.+|+++-... . ..+.+.+ ....+.+|+|||+|.+.... ...+..+.
T Consensus 64 ~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL 143 (301)
T 3cf0_A 64 LLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQIL 143 (301)
T ss_dssp HHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHH
Confidence 3467899999999999998763211 0 0000101 11246899999999885421 12345555
Q ss_pred HHHH----hcCCcEEEEecCCCCCCccccc--c--eeeEEcCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHH-HcCC
Q 005137 68 QIAE----KAKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVE--LQQHLLVQLIE-SCRA 136 (712)
Q Consensus 68 ~Lie----kTKrPIILTCND~n~~Lpklls--r--l~IrFkrPs~~eI~srL~~Ic~~EGik--Id~~~L~~LI~-~S~G 136 (712)
..+. ..++.||+++|.+...-+.++. | ..|.|..|+..+....++..+...++. ++...+..... .+++
T Consensus 144 ~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 144 TEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGA 223 (301)
T ss_dssp HHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHH
T ss_pred HHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHH
Confidence 5554 2356788888886543344444 4 578999999999888888888776653 44444444332 2456
Q ss_pred cHHHHHHHHHHHhhc
Q 005137 137 DIRKTIMHLQFWCQN 151 (712)
Q Consensus 137 DIRqaLN~LQf~s~s 151 (712)
||+.+++.....+..
T Consensus 224 dl~~l~~~a~~~a~~ 238 (301)
T 3cf0_A 224 DLTEICQRACKLAIR 238 (301)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988877666543
No 51
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.72 E-value=0.0081 Score=61.59 Aligned_cols=140 Identities=12% Similarity=0.080 Sum_probs=87.7
Q ss_pred hhHHHhh---CCCcEEEEeCCCcccc------cccccccCCC-----------CCCcEEEEeCCCCCChhhHHHHHHHHH
Q 005137 9 LCEAAQH---ADDEVVEVIHIPDDEN------SHGVMGKSDN-----------HVKPLILIEDVDVFFPEDRGFIAGIQQ 68 (712)
Q Consensus 9 ~~aIAke---lGydVIELNASDdR~r------n~~v~gsl~~-----------~kkkLILIDEVD~LfeeDrGf~~AL~~ 68 (712)
+.++++. .+..++.+|++.-... .....|.+.+ ..+.+|+|||||.|... .+..|..
T Consensus 42 Ar~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~---~q~~Ll~ 118 (304)
T 1ojl_A 42 ARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPL---MQVRLLR 118 (304)
T ss_dssp HHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCHH---HHHHHHH
T ss_pred HHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhhhhcCHHHhcCCCEEEEeccccCCHH---HHHHHHH
Confidence 4556664 3678999998873211 0111111111 12469999999999875 3456677
Q ss_pred HHHhc-------------CCcEEEEecCCC-------CCCcccccc-eeeEEcCCC----HHHHH----HHHHHHHHHcC
Q 005137 69 IAEKA-------------KGPVILTSNSNN-------ITLPDSLDR-LEVSFTMPM----PKDLL----SHLQMICAAEK 119 (712)
Q Consensus 69 LiekT-------------KrPIILTCND~n-------~~Lpkllsr-l~IrFkrPs----~~eI~----srL~~Ic~~EG 119 (712)
+++.. .++||+++|..- ..-+.++.| ..+.+.-|+ .+++. .+|..++...|
T Consensus 119 ~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~ 198 (304)
T 1ojl_A 119 AIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNR 198 (304)
T ss_dssp HHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTT
T ss_pred HHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhc
Confidence 77643 367999999741 111234445 244444444 23333 34445555555
Q ss_pred ---CCCCHHHHHHHHHHc-CCcHHHHHHHHHHHhhc
Q 005137 120 ---VELQQHLLVQLIESC-RADIRKTIMHLQFWCQN 151 (712)
Q Consensus 120 ---ikId~~~L~~LI~~S-~GDIRqaLN~LQf~s~s 151 (712)
..+++++++.|..+. .||+|...|.++.....
T Consensus 199 ~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~ 234 (304)
T 1ojl_A 199 KVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVL 234 (304)
T ss_dssp CCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHHH
T ss_pred cCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHh
Confidence 578999999999998 99999999999876653
No 52
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.68 E-value=0.0038 Score=71.37 Aligned_cols=136 Identities=15% Similarity=0.178 Sum_probs=88.7
Q ss_pred hhhHHHhhC---CCcEEEEeCCCcccccccccccC----CCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhc-------
Q 005137 8 SLCEAAQHA---DDEVVEVIHIPDDENSHGVMGKS----DNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA------- 73 (712)
Q Consensus 8 ~~~aIAkel---GydVIELNASDdR~rn~~v~gsl----~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekT------- 73 (712)
.+.++|+.+ +..++.+|.++-.+......+.+ ......+|+|||||.+.. ..+..|.++++..
T Consensus 537 lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~l~~~~~~~~~~vl~lDEi~~~~~---~~~~~Ll~~le~g~~~~~~g 613 (758)
T 3pxi_A 537 LARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLTEKVRRKPYSVVLLDAIEKAHP---DVFNILLQVLEDGRLTDSKG 613 (758)
T ss_dssp HHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---CHHHHHHCSSSEEEEECGGGSCH---HHHHHHHHHHHHSBCC----
T ss_pred HHHHHHHHhcCCCcceEEEechhcccccccccchhhHHHHhCCCeEEEEeCccccCH---HHHHHHHHHhccCeEEcCCC
Confidence 455677776 68899999988554211111211 123467999999999855 4667888888762
Q ss_pred ------CCcEEEEecCCCC------------CCcccccc--eeeEEcCCCHHHHHHHHHHHHHH---------cCCCCCH
Q 005137 74 ------KGPVILTSNSNNI------------TLPDSLDR--LEVSFTMPMPKDLLSHLQMICAA---------EKVELQQ 124 (712)
Q Consensus 74 ------KrPIILTCND~n~------------~Lpkllsr--l~IrFkrPs~~eI~srL~~Ic~~---------EGikId~ 124 (712)
+..||+|+|.... ..|.++.| ..|.|.+|+.+++...+...+.. .++.+++
T Consensus 614 ~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 693 (758)
T 3pxi_A 614 RTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTD 693 (758)
T ss_dssp -CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECH
T ss_pred CEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECH
Confidence 3468999995322 23445677 57899999999888888776543 2457899
Q ss_pred HHHHHHHHH---cCCcHHHHHHHHH
Q 005137 125 HLLVQLIES---CRADIRKTIMHLQ 146 (712)
Q Consensus 125 ~~L~~LI~~---S~GDIRqaLN~LQ 146 (712)
++++.|+.. -.+.+|..-|.++
T Consensus 694 ~a~~~l~~~~~~~~~~~R~L~~~i~ 718 (758)
T 3pxi_A 694 AAKAKVAEEGVDLEYGARPLRRAIQ 718 (758)
T ss_dssp HHHHHHHGGGCCTTTTTTTHHHHHH
T ss_pred HHHHHHHHhCCCCCCCChHHHHHHH
Confidence 999999874 2345554444444
No 53
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.0076 Score=65.99 Aligned_cols=142 Identities=13% Similarity=0.175 Sum_probs=87.9
Q ss_pred ChhhHHHhhCCCcEEEEeCCCcccc----c-ccccccC---CCCCCcEEEEeCCCCCChh--------hHHHHHHHHHHH
Q 005137 7 VSLCEAAQHADDEVVEVIHIPDDEN----S-HGVMGKS---DNHVKPLILIEDVDVFFPE--------DRGFIAGIQQIA 70 (712)
Q Consensus 7 ~~~~aIAkelGydVIELNASDdR~r----n-~~v~gsl---~~~kkkLILIDEVD~Lfee--------DrGf~~AL~~Li 70 (712)
+.+.++|+++|..++.+++++-..+ + ..+...+ ....+.+|+|||+|.++.. ++.....+..++
T Consensus 230 llAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL 309 (434)
T 4b4t_M 230 LLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELL 309 (434)
T ss_dssp HHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHH
Confidence 5678999999999999999884321 0 0000000 0134689999999998431 222233444444
Q ss_pred Hh-------cCCcEEEEecCCCCCCccccc--c--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc----
Q 005137 71 EK-------AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQH-LLVQLIESC---- 134 (712)
Q Consensus 71 ek-------TKrPIILTCND~n~~Lpklls--r--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~-~L~~LI~~S---- 134 (712)
.. .++-||.++|.+...=+.++. | ..|.|..|+.++-...|+..+....+ +++ .++.|+..+
T Consensus 310 ~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~--~~dvdl~~lA~~t~G~s 387 (434)
T 4b4t_M 310 NQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT--DDDINWQELARSTDEFN 387 (434)
T ss_dssp HHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB--CSCCCHHHHHHHCSSCC
T ss_pred HHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC--CCcCCHHHHHHhCCCCC
Confidence 43 234467788887643333443 4 67899999988877777766665443 222 256666654
Q ss_pred CCcHHHHHHHHHHHhh
Q 005137 135 RADIRKTIMHLQFWCQ 150 (712)
Q Consensus 135 ~GDIRqaLN~LQf~s~ 150 (712)
+.||+.+++.--..+.
T Consensus 388 GADi~~l~~eA~~~a~ 403 (434)
T 4b4t_M 388 GAQLKAVTVEAGMIAL 403 (434)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4599999987555443
No 54
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.56 E-value=0.0085 Score=65.87 Aligned_cols=143 Identities=13% Similarity=0.167 Sum_probs=89.0
Q ss_pred ChhhHHHhhCCCcEEEEeCCCcccc----c-ccccccC---CCCCCcEEEEeCCCCCChh--------hHHHHHHHHHHH
Q 005137 7 VSLCEAAQHADDEVVEVIHIPDDEN----S-HGVMGKS---DNHVKPLILIEDVDVFFPE--------DRGFIAGIQQIA 70 (712)
Q Consensus 7 ~~~~aIAkelGydVIELNASDdR~r----n-~~v~gsl---~~~kkkLILIDEVD~Lfee--------DrGf~~AL~~Li 70 (712)
+.+.++|+++|..++.+++++-..+ + ..+...+ ....+.+|+|||+|.++.. ++.....+..++
T Consensus 231 lLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL 310 (437)
T 4b4t_I 231 LLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELL 310 (437)
T ss_dssp HHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHH
Confidence 5678999999999999999884321 0 0000000 1135689999999999542 222233444444
Q ss_pred Hh-------cCCcEEEEecCCCCCCccccc--c--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH----c
Q 005137 71 EK-------AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQH-LLVQLIES----C 134 (712)
Q Consensus 71 ek-------TKrPIILTCND~n~~Lpklls--r--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~-~L~~LI~~----S 134 (712)
.. ..+=||.++|.+...=+.++. | ..|.|..|+.++-...|+..+.. +.++++ .++.|+.. +
T Consensus 311 ~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~--~~l~~dvdl~~LA~~T~GfS 388 (437)
T 4b4t_I 311 NQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSK--MNLSEDVNLETLVTTKDDLS 388 (437)
T ss_dssp HHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTT--SCBCSCCCHHHHHHHCCSCC
T ss_pred HHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcC--CCCCCcCCHHHHHHhCCCCC
Confidence 32 223477788887643333443 4 56889999988877777665544 444332 36667665 4
Q ss_pred CCcHHHHHHHHHHHhhc
Q 005137 135 RADIRKTIMHLQFWCQN 151 (712)
Q Consensus 135 ~GDIRqaLN~LQf~s~s 151 (712)
+.||+.+++.-.+.+..
T Consensus 389 GADI~~l~~eA~~~Air 405 (437)
T 4b4t_I 389 GADIQAMCTEAGLLALR 405 (437)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56999999877666543
No 55
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.55 E-value=0.0025 Score=65.61 Aligned_cols=106 Identities=9% Similarity=0.170 Sum_probs=75.3
Q ss_pred CCcEEEEeCCCCCChh---hHHHHHHHHHHHHh-------cCCcEEEEecCCCCC--C----cccccc--eeeEEcCCCH
Q 005137 43 VKPLILIEDVDVFFPE---DRGFIAGIQQIAEK-------AKGPVILTSNSNNIT--L----PDSLDR--LEVSFTMPMP 104 (712)
Q Consensus 43 kkkLILIDEVD~Lfee---DrGf~~AL~~Liek-------TKrPIILTCND~n~~--L----pkllsr--l~IrFkrPs~ 104 (712)
++.+|+|||+|.+... +...+..+..++.. .+..||+++|+.... + +....+ ..+.|.+++.
T Consensus 138 ~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~ 217 (412)
T 1w5s_A 138 HYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKS 217 (412)
T ss_dssp CEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCH
T ss_pred CeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCH
Confidence 4568999999998642 44566666666653 334488888764310 1 112122 2399999999
Q ss_pred HHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcC------CcHHHHHHHHHHH
Q 005137 105 KDLLSHLQMICAAEKV--ELQQHLLVQLIESCR------ADIRKTIMHLQFW 148 (712)
Q Consensus 105 ~eI~srL~~Ic~~EGi--kId~~~L~~LI~~S~------GDIRqaLN~LQf~ 148 (712)
+++...+...+...+. .++++.+..|+..++ |+.|.+++.++..
T Consensus 218 ~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a 269 (412)
T 1w5s_A 218 RELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMA 269 (412)
T ss_dssp HHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Confidence 9999999877665433 588999999999999 9999999888753
No 56
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.54 E-value=0.017 Score=58.52 Aligned_cols=135 Identities=18% Similarity=0.160 Sum_probs=89.0
Q ss_pred hhhHHHhhCCCcEEEEeCCCccc------cc---------ccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDE------NS---------HGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK 72 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~------rn---------~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek 72 (712)
.+.++|+.++..++.++.+.+.. .. ....|.+ ...+++|||+|.+... .+.+|.+.++.
T Consensus 62 la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~~~~~~g~l---~~~vl~iDEi~~~~~~---~~~~Ll~~l~~ 135 (331)
T 2r44_A 62 SVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGNFEVKKGPV---FSNFILADEVNRSPAK---VQSALLECMQE 135 (331)
T ss_dssp HHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTEEEEEECTT---CSSEEEEETGGGSCHH---HHHHHHHHHHH
T ss_pred HHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCCCceEeccCcc---cccEEEEEccccCCHH---HHHHHHHHHhc
Confidence 45678999999999999853211 00 0011111 1379999999998664 45667777764
Q ss_pred c-----------C--CcEEEEecCCC-----CCCcccccc--eeeEEcCCCHHHHHHHHHHHHHH---------------
Q 005137 73 A-----------K--GPVILTSNSNN-----ITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAA--------------- 117 (712)
Q Consensus 73 T-----------K--rPIILTCND~n-----~~Lpkllsr--l~IrFkrPs~~eI~srL~~Ic~~--------------- 117 (712)
. . .-||.++|... ..-+.+++| ..+.|..|+.++....|+..+..
T Consensus 136 ~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i 215 (331)
T 2r44_A 136 KQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDV 215 (331)
T ss_dssp SEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHH
T ss_pred CceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHH
Confidence 2 1 22444445322 122446677 46899999999998888877654
Q ss_pred -------cCCCCCHHHHHHHHHHc-----CC---------------cHHHHHHHHHHH
Q 005137 118 -------EKVELQQHLLVQLIESC-----RA---------------DIRKTIMHLQFW 148 (712)
Q Consensus 118 -------EGikId~~~L~~LI~~S-----~G---------------DIRqaLN~LQf~ 148 (712)
.++.+++++++.|+... .+ ..|+.++.+...
T Consensus 216 ~~~~~~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a 273 (331)
T 2r44_A 216 LEIRNEINKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVA 273 (331)
T ss_dssp HHHHHHHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHH
Confidence 37889999999887754 23 589998887654
No 57
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.0091 Score=66.12 Aligned_cols=142 Identities=14% Similarity=0.194 Sum_probs=87.3
Q ss_pred ChhhHHHhhCCCcEEEEeCCCcccc----c-ccccccC---CCCCCcEEEEeCCCCCChh--------hHHHHHHHHHHH
Q 005137 7 VSLCEAAQHADDEVVEVIHIPDDEN----S-HGVMGKS---DNHVKPLILIEDVDVFFPE--------DRGFIAGIQQIA 70 (712)
Q Consensus 7 ~~~~aIAkelGydVIELNASDdR~r----n-~~v~gsl---~~~kkkLILIDEVD~Lfee--------DrGf~~AL~~Li 70 (712)
+.+.++|+++|..++.+++++-..+ + ..+...+ ....+.+|+|||+|.++.. +......+..++
T Consensus 258 lLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL 337 (467)
T 4b4t_H 258 LCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELI 337 (467)
T ss_dssp HHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHH
T ss_pred HHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHH
Confidence 5678999999999999999884321 0 0000000 1235789999999999642 222233444444
Q ss_pred Hh-------cCCcEEEEecCCCCCCccccc--c--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcC---
Q 005137 71 EK-------AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQH-LLVQLIESCR--- 135 (712)
Q Consensus 71 ek-------TKrPIILTCND~n~~Lpklls--r--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~-~L~~LI~~S~--- 135 (712)
.. ..+-||.++|.+...=+.++. | ..|.|..|+.++-...|+..+.. +.++.+ .++.|+..+.
T Consensus 338 ~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~--~~l~~dvdl~~LA~~T~GfS 415 (467)
T 4b4t_H 338 TQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKS--MSVERGIRWELISRLCPNST 415 (467)
T ss_dssp HHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTT--SCBCSSCCHHHHHHHCCSCC
T ss_pred HHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcC--CCCCCCCCHHHHHHHCCCCC
Confidence 32 234467777887643333432 4 67899999988877777655544 333322 2566666554
Q ss_pred -CcHHHHHHHHHHHhh
Q 005137 136 -ADIRKTIMHLQFWCQ 150 (712)
Q Consensus 136 -GDIRqaLN~LQf~s~ 150 (712)
.||+.+++.--+.+.
T Consensus 416 GADI~~l~~eAa~~Ai 431 (467)
T 4b4t_H 416 GAELRSVCTEAGMFAI 431 (467)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 499999887655543
No 58
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.53 E-value=0.0041 Score=60.91 Aligned_cols=142 Identities=13% Similarity=0.089 Sum_probs=84.8
Q ss_pred hhhHHHhhCCCcEEEEeCCCccccc-----ccccccC---CCCCCcEEEEeCCCCCChhh-----------HHHHHHHHH
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDENS-----HGVMGKS---DNHVKPLILIEDVDVFFPED-----------RGFIAGIQQ 68 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~rn-----~~v~gsl---~~~kkkLILIDEVD~LfeeD-----------rGf~~AL~~ 68 (712)
.+.++|++++..++.+++++-.... ..+...+ ....+.+++|||+|.+.... ...+..+..
T Consensus 61 la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~ 140 (257)
T 1lv7_A 61 LAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLV 140 (257)
T ss_dssp HHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHH
Confidence 4568899999999999998743210 0000000 11235699999999885431 122333333
Q ss_pred HHHh----cCCcEEEEecCCCCCCccccc--c--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC---
Q 005137 69 IAEK----AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHL-LVQLIESCRA--- 136 (712)
Q Consensus 69 Liek----TKrPIILTCND~n~~Lpklls--r--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~-L~~LI~~S~G--- 136 (712)
.+.. .++.||.++|.+...-+.++. | ..+.|..|+.++-...++..+.. +.+.++. +..++..+.|
T Consensus 141 ~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~--~~l~~~~~~~~la~~~~G~~~ 218 (257)
T 1lv7_A 141 EMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR--VPLAPDIDAAIIARGTPGFSG 218 (257)
T ss_dssp HHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT--SCBCTTCCHHHHHHTCTTCCH
T ss_pred HhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhc--CCCCccccHHHHHHHcCCCCH
Confidence 3332 234578888887543344443 3 57889999988877777766544 4444333 5667777777
Q ss_pred -cHHHHHHHHHHHhhc
Q 005137 137 -DIRKTIMHLQFWCQN 151 (712)
Q Consensus 137 -DIRqaLN~LQf~s~s 151 (712)
||+.+++.....+..
T Consensus 219 ~dl~~l~~~a~~~a~~ 234 (257)
T 1lv7_A 219 ADLANLVNEAALFAAR 234 (257)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 666666666555543
No 59
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.41 E-value=0.00031 Score=68.98 Aligned_cols=143 Identities=15% Similarity=0.097 Sum_probs=84.4
Q ss_pred hhhHHHhhCCCcEEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCChhhH-H-----------HHHHHH
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFPEDR-G-----------FIAGIQ 67 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~r-----n~~v~gsl---~~~kkkLILIDEVD~LfeeDr-G-----------f~~AL~ 67 (712)
.+.++|++++..++.+++++-... .....+.+ ......+|+|||+|.++.... | .+..+.
T Consensus 60 la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll 139 (268)
T 2r62_A 60 LAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLL 139 (268)
T ss_dssp HHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTT
T ss_pred HHHHHHHHhCCCEEEechHHHHHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHH
Confidence 466889999999999999874321 00001111 012458999999999976421 1 112222
Q ss_pred HHHHh-----cCCcEEEEecCCCCCCccccc--c--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC--
Q 005137 68 QIAEK-----AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRA-- 136 (712)
Q Consensus 68 ~Liek-----TKrPIILTCND~n~~Lpklls--r--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~G-- 136 (712)
..+.. ..+.||.++|.....-+.++. | ..+.|..|+.++....|+..+...++. ++..++.|+..+.|
T Consensus 140 ~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~ 218 (268)
T 2r62_A 140 AEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKLTAGLA 218 (268)
T ss_dssp TTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSSSCSSC
T ss_pred HHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHHcCCCC
Confidence 22211 124466677776532233444 3 568999999999888888776543332 12225555555544
Q ss_pred --cHHHHHHHHHHHhhc
Q 005137 137 --DIRKTIMHLQFWCQN 151 (712)
Q Consensus 137 --DIRqaLN~LQf~s~s 151 (712)
||+.+++.....+..
T Consensus 219 g~dl~~l~~~a~~~a~~ 235 (268)
T 2r62_A 219 GADLANIINEAALLAGR 235 (268)
T ss_dssp HHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 999999888877654
No 60
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.19 E-value=0.0032 Score=65.27 Aligned_cols=143 Identities=12% Similarity=0.099 Sum_probs=89.9
Q ss_pred hhhHHHhhCCCcEEEEeCCCcccc-------ccccc-------ccCCCCCCcEEEEeCCCCCChh-----------hHHH
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDEN-------SHGVM-------GKSDNHVKPLILIEDVDVFFPE-----------DRGF 62 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~r-------n~~v~-------gsl~~~kkkLILIDEVD~Lfee-----------DrGf 62 (712)
.+.++|+.+|..++++|+++-... ..... +.+....+.+|+|||+|.+... .++.
T Consensus 67 la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~ 146 (363)
T 3hws_A 67 LAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGV 146 (363)
T ss_dssp HHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHH
T ss_pred HHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHH
Confidence 567899999999999999762210 00000 0011123579999999988643 1236
Q ss_pred HHHHHHHHH-----------------------hcCCcEEEEecCC----------CC-----------------------
Q 005137 63 IAGIQQIAE-----------------------KAKGPVILTSNSN----------NI----------------------- 86 (712)
Q Consensus 63 ~~AL~~Lie-----------------------kTKrPIILTCND~----------n~----------------------- 86 (712)
+.+|.++++ .+++++|+++|.. ..
T Consensus 147 ~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~ 226 (363)
T 3hws_A 147 QQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELL 226 (363)
T ss_dssp HHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHH
T ss_pred HHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHH
Confidence 778888777 2456778887742 00
Q ss_pred ------------CCcccccc--eeeEEcCCCHHHHHHHHHH----HH-------HHcC--CCCCHHHHHHHHHH---cCC
Q 005137 87 ------------TLPDSLDR--LEVSFTMPMPKDLLSHLQM----IC-------AAEK--VELQQHLLVQLIES---CRA 136 (712)
Q Consensus 87 ------------~Lpkllsr--l~IrFkrPs~~eI~srL~~----Ic-------~~EG--ikId~~~L~~LI~~---S~G 136 (712)
..+.++.| ..+.|.+|+.+++...+.. +. ...| +.+++++++.|+.. .++
T Consensus 227 ~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~ 306 (363)
T 3hws_A 227 AQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKT 306 (363)
T ss_dssp HTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCcc
Confidence 23445566 5567999998887766654 22 2224 45899999999964 355
Q ss_pred cHHHHHHHHHHHhh
Q 005137 137 DIRKTIMHLQFWCQ 150 (712)
Q Consensus 137 DIRqaLN~LQf~s~ 150 (712)
.+|..-|.++-...
T Consensus 307 gaR~L~~~ie~~~~ 320 (363)
T 3hws_A 307 GARGLRSIVEAALL 320 (363)
T ss_dssp TTTTHHHHHHHHHH
T ss_pred CchHHHHHHHHHHH
Confidence 55666666654443
No 61
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.16 E-value=0.013 Score=64.05 Aligned_cols=142 Identities=16% Similarity=0.140 Sum_probs=85.7
Q ss_pred ChhhHHHhhCCCcEEEEeCCCccccc-----ccccccC---CCCCCcEEEEeCCCCCChh--------hHHHHHHHHHHH
Q 005137 7 VSLCEAAQHADDEVVEVIHIPDDENS-----HGVMGKS---DNHVKPLILIEDVDVFFPE--------DRGFIAGIQQIA 70 (712)
Q Consensus 7 ~~~~aIAkelGydVIELNASDdR~rn-----~~v~gsl---~~~kkkLILIDEVD~Lfee--------DrGf~~AL~~Li 70 (712)
+.+.++|+++|..++.+++++-..+. ..+...+ ....+.+|+|||+|.++.. ++...+.+.+++
T Consensus 221 ~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL 300 (428)
T 4b4t_K 221 MLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELL 300 (428)
T ss_dssp HHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHH
Confidence 46789999999999999998844220 0000000 1135789999999987421 222223344443
Q ss_pred Hh-------cCCcEEEEecCCCCCCccccc--c--eeeEEc-CCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHc---
Q 005137 71 EK-------AKGPVILTSNSNNITLPDSLD--R--LEVSFT-MPMPKDLLSHLQMICAAEKVELQQH-LLVQLIESC--- 134 (712)
Q Consensus 71 ek-------TKrPIILTCND~n~~Lpklls--r--l~IrFk-rPs~~eI~srL~~Ic~~EGikId~~-~L~~LI~~S--- 134 (712)
.. ..+-||.++|.+...=+.++. | ..|.|. .|+..+-...++.++...+ +.++ .++.|+..+
T Consensus 301 ~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~--l~~~~dl~~lA~~t~G~ 378 (428)
T 4b4t_K 301 TQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMS--LAPEADLDSLIIRNDSL 378 (428)
T ss_dssp HHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSC--BCTTCCHHHHHHHTTTC
T ss_pred HHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCC--CCcccCHHHHHHHCCCC
Confidence 32 234578888887653334443 4 468885 6777776666666565443 3332 367777654
Q ss_pred -CCcHHHHHHHHHHHhh
Q 005137 135 -RADIRKTIMHLQFWCQ 150 (712)
Q Consensus 135 -~GDIRqaLN~LQf~s~ 150 (712)
+.||+..++.--..+.
T Consensus 379 sgadi~~l~~eA~~~a~ 395 (428)
T 4b4t_K 379 SGAVIAAIMQEAGLRAV 395 (428)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 4599999987655444
No 62
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.03 E-value=0.0039 Score=72.52 Aligned_cols=140 Identities=18% Similarity=0.146 Sum_probs=93.0
Q ss_pred hhhHHHhhC---CCcEEEEeCCCcccc---cccc----------c-ccCC----CCCCcEEEEeCCCCCChhhHHHHHHH
Q 005137 8 SLCEAAQHA---DDEVVEVIHIPDDEN---SHGV----------M-GKSD----NHVKPLILIEDVDVFFPEDRGFIAGI 66 (712)
Q Consensus 8 ~~~aIAkel---GydVIELNASDdR~r---n~~v----------~-gsl~----~~kkkLILIDEVD~LfeeDrGf~~AL 66 (712)
.+.++|+.+ +..++.+|++.-... ...+ . |.+. .....+|+|||||.+.. ..+..|
T Consensus 604 lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~---~~~~~L 680 (854)
T 1qvr_A 604 LAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHP---DVFNIL 680 (854)
T ss_dssp HHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHHCSSEEEEESSGGGSCH---HHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccCH---HHHHHH
Confidence 456777777 788999999874322 0000 0 1111 12357999999998854 466788
Q ss_pred HHHHHhc-------------CCcEEEEecCC--------------------------CCCCcccccc--eeeEEcCCCHH
Q 005137 67 QQIAEKA-------------KGPVILTSNSN--------------------------NITLPDSLDR--LEVSFTMPMPK 105 (712)
Q Consensus 67 ~~LiekT-------------KrPIILTCND~--------------------------n~~Lpkllsr--l~IrFkrPs~~ 105 (712)
.+++... +..||+|+|-. ....|.++.| ..+.|.+|+.+
T Consensus 681 l~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~e 760 (854)
T 1qvr_A 681 LQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKE 760 (854)
T ss_dssp HHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHH
T ss_pred HHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHH
Confidence 8888753 22389999851 1122445566 46789999988
Q ss_pred HHHHHHHHHHHH-------c--CCCCCHHHHHHHHHHcC---CcHHHHHHHHHHHhh
Q 005137 106 DLLSHLQMICAA-------E--KVELQQHLLVQLIESCR---ADIRKTIMHLQFWCQ 150 (712)
Q Consensus 106 eI~srL~~Ic~~-------E--GikId~~~L~~LI~~S~---GDIRqaLN~LQf~s~ 150 (712)
++...+...+.. . ++.+++++++.|+..+. |++|..-+.++-...
T Consensus 761 di~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~ 817 (854)
T 1qvr_A 761 QIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELE 817 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHH
Confidence 887777655431 1 35789999999999765 888888888776543
No 63
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.90 E-value=0.0032 Score=69.42 Aligned_cols=143 Identities=15% Similarity=0.150 Sum_probs=89.1
Q ss_pred ChhhHHHhhCCCcEEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCChh--------hHHHHHHHHHHH
Q 005137 7 VSLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFPE--------DRGFIAGIQQIA 70 (712)
Q Consensus 7 ~~~~aIAkelGydVIELNASDdR~r-----n~~v~gsl---~~~kkkLILIDEVD~Lfee--------DrGf~~AL~~Li 70 (712)
+.+.++|++.+..++.+|+++-... .....+.+ ...++.+|+|||+|.+... .+..+..|..++
T Consensus 253 ~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~l 332 (489)
T 3hu3_A 253 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLM 332 (489)
T ss_dssp HHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHh
Confidence 3567889999999999998773321 00011111 1134579999999988652 234556676666
Q ss_pred Hh----cCCcEEEEecCCCCCCccccc--c--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----cH
Q 005137 71 EK----AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRA----DI 138 (712)
Q Consensus 71 ek----TKrPIILTCND~n~~Lpklls--r--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~G----DI 138 (712)
.. .++.||.++|.....-+.++. + ..|.|..|+..+....|+..+...++.. +..+..|+..+.| ||
T Consensus 333 d~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~-~~~l~~la~~t~g~s~~dL 411 (489)
T 3hu3_A 333 DGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD-DVDLEQVANETHGHVGADL 411 (489)
T ss_dssp HHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCT-TCCHHHHHHTCTTCCHHHH
T ss_pred hccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcc-hhhHHHHHHHccCCcHHHH
Confidence 64 334567777876433344444 3 5799999999998888887765544432 2246677776666 55
Q ss_pred HHHHHHHHHHhh
Q 005137 139 RKTIMHLQFWCQ 150 (712)
Q Consensus 139 RqaLN~LQf~s~ 150 (712)
+..++..-..+.
T Consensus 412 ~~L~~~A~~~a~ 423 (489)
T 3hu3_A 412 AALCSEAALQAI 423 (489)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555554444443
No 64
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.71 E-value=0.009 Score=70.02 Aligned_cols=139 Identities=17% Similarity=0.183 Sum_probs=86.5
Q ss_pred ChhhHHHhhCCCcEEEEeCCCcccc---------cccccccCCCCCCcEEEEeCCCCCChh--------hHHHHHHHHHH
Q 005137 7 VSLCEAAQHADDEVVEVIHIPDDEN---------SHGVMGKSDNHVKPLILIEDVDVFFPE--------DRGFIAGIQQI 69 (712)
Q Consensus 7 ~~~~aIAkelGydVIELNASDdR~r---------n~~v~gsl~~~kkkLILIDEVD~Lfee--------DrGf~~AL~~L 69 (712)
+.+.++|+++|..++++|+++-.++ ...+... ....+.+|+|||+|.++.. ++..+..|...
T Consensus 253 ~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr~lF~~A-~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~ 331 (806)
T 3cf2_A 253 LIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA-EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTL 331 (806)
T ss_dssp HHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHHHHHHHH-TTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTH
T ss_pred HHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHHHHHHHH-HHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHH
Confidence 4678999999999999999873321 0111100 1235789999999999642 33344555555
Q ss_pred HHh----cCCcEEEEecCCCCCCccccc--c--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHc----CC
Q 005137 70 AEK----AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQ-HLLVQLIESC----RA 136 (712)
Q Consensus 70 iek----TKrPIILTCND~n~~Lpklls--r--l~IrFkrPs~~eI~srL~~Ic~~EGikId~-~~L~~LI~~S----~G 136 (712)
+.. ..+.||.+||.+...=+.++. | ..|.|..|+..+=...|+..+. ++.+.+ -.+..|+..+ +.
T Consensus 332 mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~--~~~~~~dvdl~~lA~~T~Gfsga 409 (806)
T 3cf2_A 332 MDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK--NMKLADDVDLEQVANETHGHVGA 409 (806)
T ss_dssp HHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCS--SSEECTTCCHHHHHHHCCSCCHH
T ss_pred HhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhc--CCCCCcccCHHHHHHhcCCCCHH
Confidence 543 456788888987653333443 3 5789999998776666654433 333322 2366666654 46
Q ss_pred cHHHHHHHHHHH
Q 005137 137 DIRKTIMHLQFW 148 (712)
Q Consensus 137 DIRqaLN~LQf~ 148 (712)
||+..++.....
T Consensus 410 DL~~Lv~eA~~~ 421 (806)
T 3cf2_A 410 DLAALCSEAALQ 421 (806)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888777654433
No 65
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.60 E-value=0.018 Score=66.92 Aligned_cols=133 Identities=9% Similarity=0.030 Sum_probs=79.1
Q ss_pred CCcEEEEeCCCccccc-----------ccccccCCCCCCcEEEEeCCCCCChh--h---HHHHHHHHHHHHhcCCcEEEE
Q 005137 17 DDEVVEVIHIPDDENS-----------HGVMGKSDNHVKPLILIEDVDVFFPE--D---RGFIAGIQQIAEKAKGPVILT 80 (712)
Q Consensus 17 GydVIELNASDdR~rn-----------~~v~gsl~~~kkkLILIDEVD~Lfee--D---rGf~~AL~~LiekTKrPIILT 80 (712)
|..++.++.++-.... ..+.......++.+|+|||+|.+... . ..+...|..++.....++|.+
T Consensus 226 ~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~a 305 (854)
T 1qvr_A 226 GKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGA 305 (854)
T ss_dssp TCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEE
T ss_pred CCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEe
Confidence 8899999987732100 00000001124579999999999632 1 223456778888888899999
Q ss_pred ecCCC----CCCcccccc-eeeEEcCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCCc------HHHHHHHH
Q 005137 81 SNSNN----ITLPDSLDR-LEVSFTMPMPKDLLSHLQMICA----AEKVELQQHLLVQLIESCRAD------IRKTIMHL 145 (712)
Q Consensus 81 CND~n----~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~----~EGikId~~~L~~LI~~S~GD------IRqaLN~L 145 (712)
+|... ..-+.+..| ..|.|..|+.++....|+.++. ..++.++++++..++..+.+. -++++..+
T Consensus 306 t~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~ll 385 (854)
T 1qvr_A 306 TTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLI 385 (854)
T ss_dssp ECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHH
T ss_pred cCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHH
Confidence 98632 112334455 4589999999999999987765 458999999999999887544 45666666
Q ss_pred HHHh
Q 005137 146 QFWC 149 (712)
Q Consensus 146 Qf~s 149 (712)
.-.+
T Consensus 386 dea~ 389 (854)
T 1qvr_A 386 DEAA 389 (854)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5433
No 66
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.55 E-value=0.023 Score=62.73 Aligned_cols=143 Identities=14% Similarity=0.084 Sum_probs=84.9
Q ss_pred ChhhHHHhhCCCcEEEEeCCCccccc-----ccccccC---CCCCCcEEEEeCCCCCChhhH--------HHHHHHHHHH
Q 005137 7 VSLCEAAQHADDEVVEVIHIPDDENS-----HGVMGKS---DNHVKPLILIEDVDVFFPEDR--------GFIAGIQQIA 70 (712)
Q Consensus 7 ~~~~aIAkelGydVIELNASDdR~rn-----~~v~gsl---~~~kkkLILIDEVD~LfeeDr--------Gf~~AL~~Li 70 (712)
..+.++|++.|..++.+|+++-.... ..+...+ ....+.+|+|||+|.+..... .....+.+++
T Consensus 64 ~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL 143 (476)
T 2ce7_A 64 LLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLL 143 (476)
T ss_dssp HHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHH
Confidence 34678899999999999998743210 0000000 013467999999999965311 1112333433
Q ss_pred H-------hcCCcEEEEecCCCCCCccccc--c--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC--
Q 005137 71 E-------KAKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHL-LVQLIESCRA-- 136 (712)
Q Consensus 71 e-------kTKrPIILTCND~n~~Lpklls--r--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~-L~~LI~~S~G-- 136 (712)
. ...+.||.++|.+...-+.++. | ..|.|..|+..+-...|+..+.. ..+.+++ +..|...+.|
T Consensus 144 ~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~--~~l~~~v~l~~la~~t~G~s 221 (476)
T 2ce7_A 144 VEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRN--KPLAEDVNLEIIAKRTPGFV 221 (476)
T ss_dssp HHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT--SCBCTTCCHHHHHHTCTTCC
T ss_pred HHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHh--CCCcchhhHHHHHHhcCCCc
Confidence 2 2345677788886532233333 3 47889999988777766655543 3444333 6667776654
Q ss_pred --cHHHHHHHHHHHhhc
Q 005137 137 --DIRKTIMHLQFWCQN 151 (712)
Q Consensus 137 --DIRqaLN~LQf~s~s 151 (712)
||+.+++..-..+..
T Consensus 222 gadL~~lv~~Aal~A~~ 238 (476)
T 2ce7_A 222 GADLENLVNEAALLAAR 238 (476)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 777777776665543
No 67
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.21 E-value=0.13 Score=51.17 Aligned_cols=98 Identities=9% Similarity=-0.010 Sum_probs=75.1
Q ss_pred CcEEEEeCCCCCCh----hhHHHHHHHHHHHHh-cCCcEEEEecCCC---------CCCcccccc--eeeEEcCCCHHHH
Q 005137 44 KPLILIEDVDVFFP----EDRGFIAGIQQIAEK-AKGPVILTSNSNN---------ITLPDSLDR--LEVSFTMPMPKDL 107 (712)
Q Consensus 44 kkLILIDEVD~Lfe----eDrGf~~AL~~Liek-TKrPIILTCND~n---------~~Lpkllsr--l~IrFkrPs~~eI 107 (712)
+.+|+|||++.+.. .+..++..|..++.. .+..+|+|..... .....+..+ ..+++.+.+.+++
T Consensus 129 ~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~ 208 (350)
T 2qen_A 129 EFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTS 208 (350)
T ss_dssp CEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHH
T ss_pred CEEEEEeCHHHHhccCccchhhHHHHHHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHH
Confidence 67899999999975 356788888887766 3566888875421 101112233 4789999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHH
Q 005137 108 LSHLQMICAAEKVELQQHLLVQLIESCRADIRKT 141 (712)
Q Consensus 108 ~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqa 141 (712)
...+.......|..++++.+..++..++|.-+..
T Consensus 209 ~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~~l 242 (350)
T 2qen_A 209 VEFLKRGFREVNLDVPENEIEEAVELLDGIPGWL 242 (350)
T ss_dssp HHHHHHHHHTTTCCCCHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHH
Confidence 9999988888899999999999999999998754
No 68
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.85 E-value=0.0059 Score=54.74 Aligned_cols=69 Identities=9% Similarity=0.062 Sum_probs=49.8
Q ss_pred CCcEEEEeCCCCCChh-----hHHHHHHHHHHHHhcCCcEEEEecCCC-----CCCcccccc-eeeEEcCCCHHHHHHHH
Q 005137 43 VKPLILIEDVDVFFPE-----DRGFIAGIQQIAEKAKGPVILTSNSNN-----ITLPDSLDR-LEVSFTMPMPKDLLSHL 111 (712)
Q Consensus 43 kkkLILIDEVD~Lfee-----DrGf~~AL~~LiekTKrPIILTCND~n-----~~Lpkllsr-l~IrFkrPs~~eI~srL 111 (712)
++.+|+|||+|.+... +......+..+++..+..+|+++|... ..-+.+++| ..|.|..|+.++....|
T Consensus 115 ~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 115 GNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp TTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred CCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 4569999999999643 233456777788888899999998753 223445566 47999999988876543
No 69
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=94.50 E-value=0.33 Score=51.23 Aligned_cols=106 Identities=17% Similarity=0.121 Sum_probs=71.1
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhc-------------CCcEEEEecCCC-------CCCcccccc-eeeEEcC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA-------------KGPVILTSNSNN-------ITLPDSLDR-LEVSFTM 101 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekT-------------KrPIILTCND~n-------~~Lpkllsr-l~IrFkr 101 (712)
.+..|++|||+.|... .+..|.++++.. .++||+++|..- ..-+.++.| ..+.+.-
T Consensus 222 ~~gtlfldei~~l~~~---~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~rl~~~~i~l 298 (368)
T 3dzd_A 222 DQGTLFLDEVGELDQR---VQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYYRLSVFQIYL 298 (368)
T ss_dssp TTSEEEEETGGGSCHH---HHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTSEEEEC
T ss_pred CCCeEEecChhhCCHH---HHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHHHhCCeEEeC
Confidence 3468999999999765 456777777752 355899998631 111234444 3344444
Q ss_pred CCH----HHH----HHHHHHHHHHcCC---CCCHHHHHHHHHHc-CCcHHHHHHHHHHHhhc
Q 005137 102 PMP----KDL----LSHLQMICAAEKV---ELQQHLLVQLIESC-RADIRKTIMHLQFWCQN 151 (712)
Q Consensus 102 Ps~----~eI----~srL~~Ic~~EGi---kId~~~L~~LI~~S-~GDIRqaLN~LQf~s~s 151 (712)
|+. ++| ..+|...+...|. .+++++++.|..+. .|++|+..|.++..+..
T Consensus 299 PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~ 360 (368)
T 3dzd_A 299 PPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVIL 360 (368)
T ss_dssp CCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHT
T ss_pred CChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 442 233 3445555666554 58999999999987 99999999999976653
No 70
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.34 E-value=0.05 Score=56.20 Aligned_cols=104 Identities=18% Similarity=0.096 Sum_probs=63.1
Q ss_pred hhhHHHhhCCCcEEEEeCCCcccccccccccCCC-CCCcEEEEeCCCCCChhhHHHHHHHHHHHH--------h------
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDENSHGVMGKSDN-HVKPLILIEDVDVFFPEDRGFIAGIQQIAE--------K------ 72 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~rn~~v~gsl~~-~kkkLILIDEVD~LfeeDrGf~~AL~~Lie--------k------ 72 (712)
.+.+||+.++. .-++|.++ ++.. +.. ..+.|+|.||+. +.++.. .+++.++. +
T Consensus 120 ~a~ala~~~~l-~G~vn~~~----~~f~---l~~~~~k~i~l~Ee~~-~~~d~~---~~lr~i~~G~~~~id~K~k~~~~ 187 (267)
T 1u0j_A 120 IAEAIAHTVPF-YGCVNWTN----ENFP---FNDCVDKMVIWWEEGK-MTAKVV---ESAKAILGGSKVRVDQKCKSSAQ 187 (267)
T ss_dssp HHHHHHHHSSC-EEECCTTC----SSCT---TGGGSSCSEEEECSCC-EETTTH---HHHHHHHTTCCEEC------CCE
T ss_pred HHHHHHhhhcc-cceeeccc----cccc---cccccccEEEEecccc-chhHHH---HHHHHHhCCCcEEEecCcCCccc
Confidence 34578887655 34556643 1221 122 234566655554 444322 34555555 3
Q ss_pred -cCCcEEEEecCC-C----------CCCcccccc-eeeEEc--------CCCHHHHHHHHHHHHHHcCCCCCH
Q 005137 73 -AKGPVILTSNSN-N----------ITLPDSLDR-LEVSFT--------MPMPKDLLSHLQMICAAEKVELQQ 124 (712)
Q Consensus 73 -TKrPIILTCND~-n----------~~Lpkllsr-l~IrFk--------rPs~~eI~srL~~Ic~~EGikId~ 124 (712)
.+.|+|+|||.. . ...+.+.+| ..++|. +.+.+++.+++..+ ..|++++++
T Consensus 188 v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR~~~f~F~~~~p~~~~~lt~~~~~~f~~w~-~~~~~~~~~ 259 (267)
T 1u0j_A 188 IDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFKFELTRRLDHDFGKVTKQEVKDFFRWA-KDHVVEVEH 259 (267)
T ss_dssp ECCCCEEEEESSCTTCEEETTEEECTTHHHHHTTEEEEECCSCCCTTSCCCCHHHHHHHHHHH-HHTCCCCCC
T ss_pred ccCCCEEEEecCCcccccccCccchhhhHHHhhhEEEEECCCcCCcccCCCCHHHHHHHHHHH-HHcCCCCcc
Confidence 457999999972 1 223445567 788998 78899999999966 888887653
No 71
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.13 E-value=0.07 Score=60.76 Aligned_cols=94 Identities=12% Similarity=0.149 Sum_probs=67.9
Q ss_pred CCcEEEEeCCCCCCh------hhHHHHHHHHHHHHhcCCcEEEEecCCC---C-CC-cccccc-eeeEEcCCCHHHHHHH
Q 005137 43 VKPLILIEDVDVFFP------EDRGFIAGIQQIAEKAKGPVILTSNSNN---I-TL-PDSLDR-LEVSFTMPMPKDLLSH 110 (712)
Q Consensus 43 kkkLILIDEVD~Lfe------eDrGf~~AL~~LiekTKrPIILTCND~n---~-~L-pkllsr-l~IrFkrPs~~eI~sr 110 (712)
++.+|+|||+|.+.. +.......|..+++..+..+|.++|... . .+ +.+..| ..|.|..|+.++....
T Consensus 278 ~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~i 357 (758)
T 1r6b_X 278 TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQI 357 (758)
T ss_dssp SCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHH
T ss_pred CCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHH
Confidence 468999999999953 2233344455555566778888888531 1 11 334556 5689999999999999
Q ss_pred HHHHHHH----cCCCCCHHHHHHHHHHcCC
Q 005137 111 LQMICAA----EKVELQQHLLVQLIESCRA 136 (712)
Q Consensus 111 L~~Ic~~----EGikId~~~L~~LI~~S~G 136 (712)
|..++.. .++.++++++..++..+.+
T Consensus 358 l~~l~~~~~~~~~v~~~~~al~~~~~~s~~ 387 (758)
T 1r6b_X 358 INGLKPKYEAHHDVRYTAKAVRAAVELAVK 387 (758)
T ss_dssp HHHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhhh
Confidence 9888765 7899999999999887655
No 72
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=93.51 E-value=0.19 Score=55.87 Aligned_cols=142 Identities=15% Similarity=0.142 Sum_probs=82.7
Q ss_pred ChhhHHHhhCCCcEEEEeCCCcccc-----cccccccCC---CCCCcEEEEeCCCCCChh--------hHHHHHHHHHHH
Q 005137 7 VSLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKSD---NHVKPLILIEDVDVFFPE--------DRGFIAGIQQIA 70 (712)
Q Consensus 7 ~~~~aIAkelGydVIELNASDdR~r-----n~~v~gsl~---~~kkkLILIDEVD~Lfee--------DrGf~~AL~~Li 70 (712)
..+.++|.+.+..++.+|+++-... ...+...+. ...+.+++|||+|.+... .......+.+++
T Consensus 79 tLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL 158 (499)
T 2dhr_A 79 HLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL 158 (499)
T ss_dssp HHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHH
Confidence 3567889999999999999873221 000111111 123579999999988532 122234555555
Q ss_pred Hh-----cCCc--EEEEecCCCCCCccccc--c--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC--
Q 005137 71 EK-----AKGP--VILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHL-LVQLIESCRA-- 136 (712)
Q Consensus 71 ek-----TKrP--IILTCND~n~~Lpklls--r--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~-L~~LI~~S~G-- 136 (712)
.. .++. +|.++|.+...-+.++. + ..|.|..|+..+....|+..+ .++.+++++ +..|+..+.|
T Consensus 159 ~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~--~~~~l~~dv~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 159 VEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA--RGKPLAEDVDLALLAKRTPGFV 236 (499)
T ss_dssp HHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTT--SSSCCCCSSTTHHHHTTSCSCC
T ss_pred HHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHH--hcCCCChHHHHHHHHHhcCCCC
Confidence 43 1233 33344554321122333 2 578999999887777665433 466666544 6777777655
Q ss_pred --cHHHHHHHHHHHhh
Q 005137 137 --DIRKTIMHLQFWCQ 150 (712)
Q Consensus 137 --DIRqaLN~LQf~s~ 150 (712)
||+.+++..-.++.
T Consensus 237 gadL~~lv~~Aa~~A~ 252 (499)
T 2dhr_A 237 GADLENLLNEAALLAA 252 (499)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 77777776665554
No 73
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=92.91 E-value=0.045 Score=59.49 Aligned_cols=126 Identities=10% Similarity=0.026 Sum_probs=77.5
Q ss_pred CCcEEEEeCCC-ccccc-cccc---ccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhcCCcEEEEecCCC-----C
Q 005137 17 DDEVVEVIHIP-DDENS-HGVM---GKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSNN-----I 86 (712)
Q Consensus 17 GydVIELNASD-dR~rn-~~v~---gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekTKrPIILTCND~n-----~ 86 (712)
|..++++|++. .++.. ...+ ......++.+|++| +.......|..++......+|.++|... .
T Consensus 236 ~~~~~~l~~~~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-------~~~~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~ 308 (468)
T 3pxg_A 236 DKRVMTLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID-------AAIDASNILKPSLARGELQCIGATTLDEYRKYIE 308 (468)
T ss_dssp SCCEECC----------CTTHHHHHHHHHTCCCCEEEEC-------C--------CCCTTSSSCEEEEECCTTTTHHHHT
T ss_pred CCeEEEeeCCccccchHHHHHHHHHHHHHhcCCeEEEEe-------CchhHHHHHHHhhcCCCEEEEecCCHHHHHHHhh
Confidence 88899999872 11100 0000 01112245788888 2222344566666666777888888754 1
Q ss_pred CCcccccc-eeeEEcCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCcHH------HHHHHHHHHh
Q 005137 87 TLPDSLDR-LEVSFTMPMPKDLLSHLQMICAA----EKVELQQHLLVQLIESCRADIR------KTIMHLQFWC 149 (712)
Q Consensus 87 ~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~----EGikId~~~L~~LI~~S~GDIR------qaLN~LQf~s 149 (712)
..+.+++| ..|.|..|+.+++...|+.++.. .|+.++++++..++..+.+.++ ++|..|...+
T Consensus 309 ~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~ 382 (468)
T 3pxg_A 309 KDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAG 382 (468)
T ss_dssp TCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHH
T ss_pred cCHHHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHH
Confidence 23445556 57999999999999999988776 8999999999999998776654 5777776544
No 74
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=92.41 E-value=0.67 Score=49.06 Aligned_cols=105 Identities=11% Similarity=0.065 Sum_probs=70.9
Q ss_pred CcEEEEeCCCCCChhhHHHHHHHHHHHHh-------------cCCcEEEEecCCC-------CCCcccccc-eeeEEcCC
Q 005137 44 KPLILIEDVDVFFPEDRGFIAGIQQIAEK-------------AKGPVILTSNSNN-------ITLPDSLDR-LEVSFTMP 102 (712)
Q Consensus 44 kkLILIDEVD~LfeeDrGf~~AL~~Liek-------------TKrPIILTCND~n-------~~Lpkllsr-l~IrFkrP 102 (712)
+..++||||+.|..+ .+..|.++++. ..+.||+++|..- ..-+.++.+ ..+.+.-|
T Consensus 232 ~gtlfldei~~l~~~---~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~~~~i~lP 308 (387)
T 1ny5_A 232 GGTLFLDEIGELSLE---AQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIP 308 (387)
T ss_dssp TSEEEEESGGGCCHH---HHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEECC
T ss_pred CcEEEEcChhhCCHH---HHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHHhhcCCeecCC
Confidence 579999999999765 45677777765 2456899998631 112223344 34555555
Q ss_pred CH----HH----HHHHHHHHHHHcCC---CCCHHHHHHHHHHc-CCcHHHHHHHHHHHhhc
Q 005137 103 MP----KD----LLSHLQMICAAEKV---ELQQHLLVQLIESC-RADIRKTIMHLQFWCQN 151 (712)
Q Consensus 103 s~----~e----I~srL~~Ic~~EGi---kId~~~L~~LI~~S-~GDIRqaLN~LQf~s~s 151 (712)
+. ++ +..+|...+.+.|. .+++++++.|..+. -|++|..-|.++..+..
T Consensus 309 pLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~ 369 (387)
T 1ny5_A 309 PLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLF 369 (387)
T ss_dssp CGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHH
T ss_pred cchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 53 23 33445566666664 37899999999876 89999999999876653
No 75
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.17 E-value=0.1 Score=58.50 Aligned_cols=103 Identities=11% Similarity=0.144 Sum_probs=69.9
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhcC-----------------------CcEEEEecCC--CCCCcccccce--
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKAK-----------------------GPVILTSNSN--NITLPDSLDRL-- 95 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekTK-----------------------rPIILTCND~--n~~Lpkllsrl-- 95 (712)
.+.+++|||+|.|. ...|.+|.++++.-+ ..||+++|.. ....+.+++|+
T Consensus 201 ~~gvL~LDEi~~l~---~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~~~l~~R~~v 277 (604)
T 3k1j_A 201 HKGVLFIDEIATLS---LKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHPALRSRIRG 277 (604)
T ss_dssp TTSEEEETTGGGSC---HHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSCHHHHHHHHH
T ss_pred CCCEEEEechhhCC---HHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcCHHHHHHhhc
Confidence 35699999999995 457788888888421 2288999864 22334455662
Q ss_pred ---eeEEcCC---CHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHc---CCc-------HHHHHHHHHHH
Q 005137 96 ---EVSFTMP---MPKDLLSHLQMICAAEK-----VELQQHLLVQLIESC---RAD-------IRKTIMHLQFW 148 (712)
Q Consensus 96 ---~IrFkrP---s~~eI~srL~~Ic~~EG-----ikId~~~L~~LI~~S---~GD-------IRqaLN~LQf~ 148 (712)
.+.|+.. ....+..++..++...+ ..++++++..|+..+ .|| .|.+.+.++..
T Consensus 278 ~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A 351 (604)
T 3k1j_A 278 YGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAA 351 (604)
T ss_dssp HSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHH
T ss_pred cceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHH
Confidence 4555322 34556666666664332 579999999999976 564 89998888753
No 76
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=91.03 E-value=0.65 Score=45.15 Aligned_cols=142 Identities=14% Similarity=0.143 Sum_probs=80.6
Q ss_pred hhhHHHhhCCCcEEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCChh--------hHHHHHHHHHHHH
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFPE--------DRGFIAGIQQIAE 71 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~r-----n~~v~gsl---~~~kkkLILIDEVD~Lfee--------DrGf~~AL~~Lie 71 (712)
.+.++|++.+..++.+++.+-... ...+...+ ......++++||+|.+... +......+.+++.
T Consensus 65 l~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~ 144 (254)
T 1ixz_A 65 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV 144 (254)
T ss_dssp HHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHH
Confidence 456788888888999987652110 00000000 1123579999999977421 1111223333332
Q ss_pred h-----cCCcEE--EEecCCCCCCccccc--c--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC---
Q 005137 72 K-----AKGPVI--LTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHL-LVQLIESCRA--- 136 (712)
Q Consensus 72 k-----TKrPII--LTCND~n~~Lpklls--r--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~-L~~LI~~S~G--- 136 (712)
. ..+++| .++|.+...-+.++. + ..|.|..|+.++-...|+..+ +++.++++. +..|+..+.|
T Consensus 145 ~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~--~~~~~~~~~~~~~la~~~~G~~~ 222 (254)
T 1ixz_A 145 EMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA--RGKPLAEDVDLALLAKRTPGFVG 222 (254)
T ss_dssp HHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH--TTSCBCTTCCHHHHHHTCTTCCH
T ss_pred HHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH--cCCCCCcccCHHHHHHHcCCCCH
Confidence 2 123333 445665432233333 3 578999999988777777554 466665544 7778877765
Q ss_pred -cHHHHHHHHHHHhhc
Q 005137 137 -DIRKTIMHLQFWCQN 151 (712)
Q Consensus 137 -DIRqaLN~LQf~s~s 151 (712)
||+.+++..-..+..
T Consensus 223 ~dl~~~~~~a~~~a~~ 238 (254)
T 1ixz_A 223 ADLENLLNEAALLAAR 238 (254)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 777888776665543
No 77
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=90.37 E-value=0.57 Score=43.16 Aligned_cols=60 Identities=7% Similarity=0.093 Sum_probs=37.8
Q ss_pred CCcEEEEeCCCcccccccccccCCCCCCcEEEEeCCCCCChhhHH-HHHHHHHHHHhcCCc-EEEEecCC
Q 005137 17 DDEVVEVIHIPDDENSHGVMGKSDNHVKPLILIEDVDVFFPEDRG-FIAGIQQIAEKAKGP-VILTSNSN 84 (712)
Q Consensus 17 GydVIELNASDdR~rn~~v~gsl~~~kkkLILIDEVD~LfeeDrG-f~~AL~~LiekTKrP-IILTCND~ 84 (712)
|+.++.+++.+-... .. ..+..++||||++.+...++. +...+..+.+ ..++ ||+++|..
T Consensus 64 g~~~~~~~~~~~~~~-~~------~~~~~lLilDE~~~~~~~~~~~l~~li~~~~~-~g~~~iiits~~~ 125 (149)
T 2kjq_A 64 GKNAAYIDAASMPLT-DA------AFEAEYLAVDQVEKLGNEEQALLFSIFNRFRN-SGKGFLLLGSEYT 125 (149)
T ss_dssp TCCEEEEETTTSCCC-GG------GGGCSEEEEESTTCCCSHHHHHHHHHHHHHHH-HTCCEEEEEESSC
T ss_pred CCcEEEEcHHHhhHH-HH------HhCCCEEEEeCccccChHHHHHHHHHHHHHHH-cCCcEEEEECCCC
Confidence 888999998774332 11 124689999999998654432 2333333333 3467 89999864
No 78
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=89.94 E-value=0.085 Score=47.37 Aligned_cols=61 Identities=8% Similarity=0.065 Sum_probs=42.5
Q ss_pred CCcEEEEeCCCCCC-----hh-hHHHHHHHHHHHHhcCCcEEEEecCCC-----CCCcccccc-eeeEEcCCC
Q 005137 43 VKPLILIEDVDVFF-----PE-DRGFIAGIQQIAEKAKGPVILTSNSNN-----ITLPDSLDR-LEVSFTMPM 103 (712)
Q Consensus 43 kkkLILIDEVD~Lf-----ee-DrGf~~AL~~LiekTKrPIILTCND~n-----~~Lpkllsr-l~IrFkrPs 103 (712)
.+.+|+|||+|.+. .+ ...+...|..+++..+..||+++|... ..-+.+++| ..|.+..|+
T Consensus 115 ~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 115 GQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARGELRCIGATTVSEYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp TSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTTCSCEEEEECHHHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred CceEEEEeCHHHhcccccccccchHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhccHHHHHhcCcccCCCCC
Confidence 45799999999996 22 244566777888888899999999753 122445556 457777664
No 79
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=89.84 E-value=1.1 Score=44.40 Aligned_cols=99 Identities=6% Similarity=0.081 Sum_probs=69.6
Q ss_pred CcEEEEeCCCCCChh-hHHHHHHHHHHHHh-cCCcEEEEecCCCC--------CC-cccccc--eeeEEcCCCHHHHHHH
Q 005137 44 KPLILIEDVDVFFPE-DRGFIAGIQQIAEK-AKGPVILTSNSNNI--------TL-PDSLDR--LEVSFTMPMPKDLLSH 110 (712)
Q Consensus 44 kkLILIDEVD~Lfee-DrGf~~AL~~Liek-TKrPIILTCND~n~--------~L-pkllsr--l~IrFkrPs~~eI~sr 110 (712)
+.+|+|||++.+... +..++..|..+... .+..+|+|.+.... .. ..+..+ ..+.+.+.+.+++...
T Consensus 138 ~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~ 217 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEF 217 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHH
T ss_pred CeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHH
Confidence 678999999998652 34456667666665 35668888875310 01 112333 5789999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHH
Q 005137 111 LQMICAAEKVELQQHLLVQLIESCRADIRKTIMH 144 (712)
Q Consensus 111 L~~Ic~~EGikId~~~L~~LI~~S~GDIRqaLN~ 144 (712)
+.......|+..++. ..|+..++|.-+..-..
T Consensus 218 l~~~~~~~~~~~~~~--~~i~~~t~G~P~~l~~~ 249 (357)
T 2fna_A 218 LRRGFQEADIDFKDY--EVVYEKIGGIPGWLTYF 249 (357)
T ss_dssp HHHHHHHHTCCCCCH--HHHHHHHCSCHHHHHHH
T ss_pred HHHHHHHcCCCCCcH--HHHHHHhCCCHHHHHHH
Confidence 998777678877654 88899999988765433
No 80
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=88.85 E-value=1 Score=44.63 Aligned_cols=141 Identities=15% Similarity=0.142 Sum_probs=80.5
Q ss_pred hhhHHHhhCCCcEEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCChh--------hHHHHHHHHHHHH
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFPE--------DRGFIAGIQQIAE 71 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~r-----n~~v~gsl---~~~kkkLILIDEVD~Lfee--------DrGf~~AL~~Lie 71 (712)
.+.++|...+..++.+++++-... ...+...+ ....+.++++||+|.+... .......+.+++.
T Consensus 89 l~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~ 168 (278)
T 1iy2_A 89 LARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV 168 (278)
T ss_dssp HHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHH
Confidence 356788888888999988662110 00000000 1123579999999976321 1112334444443
Q ss_pred h-----cCCc--EEEEecCCCCCCccccc--c--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCC---
Q 005137 72 K-----AKGP--VILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHL-LVQLIESCRA--- 136 (712)
Q Consensus 72 k-----TKrP--IILTCND~n~~Lpklls--r--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~-L~~LI~~S~G--- 136 (712)
. ..+. +|.++|.+...-+.++. + ..|.|..|+.++....|+..+ +++.+++++ +..|+..+.|
T Consensus 169 ~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~--~~~~~~~~~~~~~la~~~~G~~~ 246 (278)
T 1iy2_A 169 EMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA--RGKPLAEDVDLALLAKRTPGFVG 246 (278)
T ss_dssp HHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH--TTSCBCTTCCHHHHHHTCTTCCH
T ss_pred HHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHH--ccCCCCcccCHHHHHHHcCCCCH
Confidence 2 1233 34455765432223333 3 578999999988888777554 456665544 7777777766
Q ss_pred -cHHHHHHHHHHHhh
Q 005137 137 -DIRKTIMHLQFWCQ 150 (712)
Q Consensus 137 -DIRqaLN~LQf~s~ 150 (712)
||+.+++..-..+.
T Consensus 247 ~dl~~l~~~a~~~a~ 261 (278)
T 1iy2_A 247 ADLENLLNEAALLAA 261 (278)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 66777766655554
No 81
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=87.96 E-value=0.4 Score=48.19 Aligned_cols=82 Identities=13% Similarity=0.141 Sum_probs=46.0
Q ss_pred hHHHhhCCCcEEEEeCCCcccccccccccCCCCCCcEEEEeCCCCCChhhHHHHHHH----HHHHHhc------------
Q 005137 10 CEAAQHADDEVVEVIHIPDDENSHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGI----QQIAEKA------------ 73 (712)
Q Consensus 10 ~aIAkelGydVIELNASDdR~rn~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL----~~LiekT------------ 73 (712)
.++|+.++..++.. | +.. ++..-..+ ...+|||+||||.- .|..+ ..++...
T Consensus 76 ~ala~~l~g~i~~f-a-ns~--s~f~l~~l--~~~kIiiLDEad~~------~~~~~d~~lrn~ldG~~~~iD~Khr~~~ 143 (212)
T 1tue_A 76 MSFIHFIQGAVISF-V-NST--SHFWLEPL--TDTKVAMLDDATTT------CWTYFDTYMRNALDGNPISIDRKHKPLI 143 (212)
T ss_dssp HHHHHHHTCEECCC-C-CSS--SCGGGGGG--TTCSSEEEEEECHH------HHHHHHHHCHHHHHTCCEEEC----CCE
T ss_pred HHHHHHhCCCeeeE-E-ecc--chhhhccc--CCCCEEEEECCCch------hHHHHHHHHHHHhCCCcccHHHhhcCcc
Confidence 46788877766543 1 111 11111111 13579999999932 23333 3333321
Q ss_pred ---CCcEEEEecCC---CCCCcccccc-eeeEEcCCC
Q 005137 74 ---KGPVILTSNSN---NITLPDSLDR-LEVSFTMPM 103 (712)
Q Consensus 74 ---KrPIILTCND~---n~~Lpkllsr-l~IrFkrPs 103 (712)
..|+|+|||-. ....+.+.+| ..+.|..|-
T Consensus 144 ~~~~~PlIITtN~~~~~~~~~~~L~SRi~~f~F~~~~ 180 (212)
T 1tue_A 144 QLKCPPILLTTNIHPAKDNRWPYLESRITVFEFPNAF 180 (212)
T ss_dssp EECCCCEEEEESSCTTSSSSCHHHHTSCEEEECCSCC
T ss_pred ccCCCCEEEecCCCcccccchhhhhhhEEEEEcCCCC
Confidence 35999999984 2344556778 778887654
No 82
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=87.65 E-value=0.31 Score=55.73 Aligned_cols=133 Identities=11% Similarity=0.036 Sum_probs=79.2
Q ss_pred hhHHHhhC----------CCcEEEEeCCCc-cccc-cccc---ccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhc
Q 005137 9 LCEAAQHA----------DDEVVEVIHIPD-DENS-HGVM---GKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKA 73 (712)
Q Consensus 9 ~~aIAkel----------GydVIELNASDd-R~rn-~~v~---gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekT 73 (712)
+.++|+.+ |..++++|+... ++.. .... +.....++.+|+|| +.......|...++..
T Consensus 218 a~~la~~l~~~~~p~~l~~~~~~~~~~g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-------~~~~~~~~L~~~l~~~ 290 (758)
T 3pxi_A 218 AEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID-------AAIDASNILKPSLARG 290 (758)
T ss_dssp HHHHHHHHHSSCSCTTTSSCCEECC----------CTTHHHHHHHHHTCCCCEEEEC-------C--------CCCTTSS
T ss_pred HHHHHHHHhcCCCChhhcCCeEEEecccccccchHHHHHHHHHHHHHhcCCEEEEEc-------CchhHHHHHHHHHhcC
Confidence 44666664 888999888221 1110 0000 01112346788888 1122344566666667
Q ss_pred CCcEEEEecCCC-----CCCcccccc-eeeEEcCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCcH-----
Q 005137 74 KGPVILTSNSNN-----ITLPDSLDR-LEVSFTMPMPKDLLSHLQMICAA----EKVELQQHLLVQLIESCRADI----- 138 (712)
Q Consensus 74 KrPIILTCND~n-----~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~~----EGikId~~~L~~LI~~S~GDI----- 138 (712)
.+.+|.++|... ..-+.++.| ..|.|..|+.++....|..++.. .++.+++.++..++..+.+.+
T Consensus 291 ~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~ 370 (758)
T 3pxi_A 291 ELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFL 370 (758)
T ss_dssp SCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCT
T ss_pred CEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcC
Confidence 788898888754 222344456 57999999999999999988765 789999999999988765443
Q ss_pred -HHHHHHHHHH
Q 005137 139 -RKTIMHLQFW 148 (712)
Q Consensus 139 -RqaLN~LQf~ 148 (712)
++++..+...
T Consensus 371 p~~ai~ll~~a 381 (758)
T 3pxi_A 371 PDKAIDLIDEA 381 (758)
T ss_dssp THHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 4566555443
No 83
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=87.45 E-value=0.38 Score=56.09 Aligned_cols=133 Identities=16% Similarity=0.175 Sum_probs=80.3
Q ss_pred hhhHHHhhCCCcEEEEeCCCcccc-----cccccccC---CCCCCcEEEEeCCCCCChh--------hHHHHHHHHHHHH
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDEN-----SHGVMGKS---DNHVKPLILIEDVDVFFPE--------DRGFIAGIQQIAE 71 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~r-----n~~v~gsl---~~~kkkLILIDEVD~Lfee--------DrGf~~AL~~Lie 71 (712)
.+.++|++++..++++|+++-... ...+...+ ....+.++++||+|.+... ++.....+..++.
T Consensus 254 Larala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~ 333 (806)
T 1ypw_A 254 IARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMD 333 (806)
T ss_dssp HHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhh
Confidence 467889999999999998773321 00000000 0124579999999988642 3445566666666
Q ss_pred h----cCCcEEEEecCCCCCCccccc--c--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHH
Q 005137 72 K----AKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIESCRADIRKT 141 (712)
Q Consensus 72 k----TKrPIILTCND~n~~Lpklls--r--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~~S~GDIRqa 141 (712)
. ..+.+|+++|++...-+.+.. + ..+.|..|+..+-...|+..+....+. ++..+..++..+.+-...-
T Consensus 334 g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~g~d 410 (806)
T 1ypw_A 334 GLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGAD 410 (806)
T ss_dssp SSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCC-TTCCTHHHHHSCSSCCHHH
T ss_pred hhcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCc-ccchhHHHHHhhcCcchHH
Confidence 3 345678888886532222222 3 567889999888888877665543332 2234566666665544433
No 84
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=86.61 E-value=0.29 Score=44.15 Aligned_cols=70 Identities=13% Similarity=0.037 Sum_probs=43.3
Q ss_pred hhHHHhhCCCcEEEEeCCCcccccccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh---cCCcEEEEecCC
Q 005137 9 LCEAAQHADDEVVEVIHIPDDENSHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK---AKGPVILTSNSN 84 (712)
Q Consensus 9 ~~aIAkelGydVIELNASDdR~rn~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek---TKrPIILTCND~ 84 (712)
+.++++..+ .++++|+++-... ...+.+......+|+|||+|.+.... +.+|.++++. ..+.||+++|..
T Consensus 44 A~~i~~~~~-~~~~~~~~~~~~~--~~~~~~~~a~~~~l~lDei~~l~~~~---q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 44 ARYFHKNGT-PWVSPARVEYLID--MPMELLQKAEGGVLYVGDIAQYSRNI---QTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp HGGGCCTTS-CEECCSSTTHHHH--CHHHHHHHTTTSEEEEEECTTCCHHH---HHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred HHHHHHhCC-CeEEechhhCChH--hhhhHHHhCCCCeEEEeChHHCCHHH---HHHHHHHHHhCCCCCEEEEEecCCC
Confidence 445555555 7899998873221 01121111235799999999997753 3455566654 346799999974
No 85
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=85.61 E-value=0.11 Score=60.84 Aligned_cols=145 Identities=16% Similarity=0.143 Sum_probs=67.8
Q ss_pred ChhhHHHhhCCCcEEEEeCCCcccc----c-ccccccC---CCCCCcEEEEeCCCCCChh------hHH-HH-HHHHHHH
Q 005137 7 VSLCEAAQHADDEVVEVIHIPDDEN----S-HGVMGKS---DNHVKPLILIEDVDVFFPE------DRG-FI-AGIQQIA 70 (712)
Q Consensus 7 ~~~~aIAkelGydVIELNASDdR~r----n-~~v~gsl---~~~kkkLILIDEVD~Lfee------DrG-f~-~AL~~Li 70 (712)
+.+.++|+++|..++.+++++-..+ + ..+...+ ....+.+|+|||+|.+... +.+ .. +.+.+++
T Consensus 526 ~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL 605 (806)
T 3cf2_A 526 LLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQIL 605 (806)
T ss_dssp HHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHH
T ss_pred HHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHH
Confidence 5678999999999999998873321 0 0010000 1235789999999999642 111 11 2233443
Q ss_pred Hh-----cCCcEEEE--ecCCCCCCccccc--c--eeeEEcCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHH-HcCC
Q 005137 71 EK-----AKGPVILT--SNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVE--LQQHLLVQLIE-SCRA 136 (712)
Q Consensus 71 ek-----TKrPIILT--CND~n~~Lpklls--r--l~IrFkrPs~~eI~srL~~Ic~~EGik--Id~~~L~~LI~-~S~G 136 (712)
.. .+.+|+++ +|.+...=+.++. | ..|.|..|+.++-...++....+..+. ++-+.|.+..+ +++.
T Consensus 606 ~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGa 685 (806)
T 3cf2_A 606 TEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGA 685 (806)
T ss_dssp HHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------
T ss_pred HHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHH
Confidence 32 23344444 4555432233332 4 578888888776666555544333221 22223333333 5788
Q ss_pred cHHHHHHHHHHHhhc
Q 005137 137 DIRKTIMHLQFWCQN 151 (712)
Q Consensus 137 DIRqaLN~LQf~s~s 151 (712)
||..+.+.-...+..
T Consensus 686 di~~l~~~A~~~a~r 700 (806)
T 3cf2_A 686 DLTEICQRACKLAIR 700 (806)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998876655543
No 86
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=85.16 E-value=2.5 Score=46.89 Aligned_cols=100 Identities=11% Similarity=0.118 Sum_probs=61.7
Q ss_pred CcEEEEeCCCCCChhhHHHHHHHHHHHHh-----------cCCcE-EEEecCCCC---CCcccccc--eeeEEcCCCH-H
Q 005137 44 KPLILIEDVDVFFPEDRGFIAGIQQIAEK-----------AKGPV-ILTSNSNNI---TLPDSLDR--LEVSFTMPMP-K 105 (712)
Q Consensus 44 kkLILIDEVD~LfeeDrGf~~AL~~Liek-----------TKrPI-ILTCND~n~---~Lpkllsr--l~IrFkrPs~-~ 105 (712)
..+++|||++.+... ...+|.++++. ...|+ |+++|.... ..+.+++| ..|.+..|+. +
T Consensus 110 ~~IL~IDEI~r~~~~---~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~e 186 (500)
T 3nbx_X 110 AEIVFLDEIWKAGPA---ILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYDRMLIRLWLDKVQDKA 186 (500)
T ss_dssp CSEEEEESGGGCCHH---HHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHTTCCEEEECCSCCCHH
T ss_pred ceeeeHHhHhhhcHH---HHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHHHHHHHHHHHHhhhhh
Confidence 458999999988654 45677777763 23456 677775321 12356677 4567777776 3
Q ss_pred HHHHHHHH-----------------------HHHHcCCCCCHHHHHHHHHHc----------CCcHHHHHHHHH
Q 005137 106 DLLSHLQM-----------------------ICAAEKVELQQHLLVQLIESC----------RADIRKTIMHLQ 146 (712)
Q Consensus 106 eI~srL~~-----------------------Ic~~EGikId~~~L~~LI~~S----------~GDIRqaLN~LQ 146 (712)
+....|.. .....++.+++++++.|+... +...|..+..+.
T Consensus 187 e~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr 260 (500)
T 3nbx_X 187 NFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIR 260 (500)
T ss_dssp HHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHH
T ss_pred hHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHH
Confidence 33333322 123457889999988887665 445677554443
No 87
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=84.23 E-value=0.88 Score=43.15 Aligned_cols=70 Identities=13% Similarity=0.134 Sum_probs=48.8
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhcCCcEEEEecCCC--CCCcccccc---eeeEEcCCCHHHHHHHHH
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSNN--ITLPDSLDR---LEVSFTMPMPKDLLSHLQ 112 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekTKrPIILTCND~n--~~Lpkllsr---l~IrFkrPs~~eI~srL~ 112 (712)
.+++||+||++-+..-|..+..+|.++++.....+|+++...+ ..+....++ ..+.|.+.+.+++...|.
T Consensus 99 ~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~~l~ 173 (178)
T 1ye8_A 99 RRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILEDIL 173 (178)
T ss_dssp TTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHHHHH
T ss_pred CCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHHHHH
Confidence 5789999999877666999999999999885555788774211 112223333 567888877766666654
No 88
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=83.61 E-value=3.4 Score=45.44 Aligned_cols=106 Identities=16% Similarity=0.258 Sum_probs=72.8
Q ss_pred CcEEEEeCCCCCCh------hhH---HHHHHHHHHHHhc------------CCcEEEEe-----cCCCCCCcccccc--e
Q 005137 44 KPLILIEDVDVFFP------EDR---GFIAGIQQIAEKA------------KGPVILTS-----NSNNITLPDSLDR--L 95 (712)
Q Consensus 44 kkLILIDEVD~Lfe------eDr---Gf~~AL~~LiekT------------KrPIILTC-----ND~n~~Lpkllsr--l 95 (712)
+.++++||+|.+.. +|. |-+.||.++++.+ ++=+|++. |... .+|.+++| .
T Consensus 251 ~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~d-lipel~~R~~i 329 (444)
T 1g41_A 251 NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSD-LIPELQGRLPI 329 (444)
T ss_dssp HCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGG-SCHHHHTTCCE
T ss_pred CCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhh-cchHHhcccce
Confidence 45899999999853 353 3457999999842 32245554 2222 46777888 4
Q ss_pred eeEEcCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHH--------cCCcHHHHHHHHHHHhh
Q 005137 96 EVSFTMPMPKDLLSHLQ-----------MICAAEKV--ELQQHLLVQLIES--------CRADIRKTIMHLQFWCQ 150 (712)
Q Consensus 96 ~IrFkrPs~~eI~srL~-----------~Ic~~EGi--kId~~~L~~LI~~--------S~GDIRqaLN~LQf~s~ 150 (712)
.|.|...+.+++...+. ..+..+|+ .++++++..|++. -+...|..-+.++-++.
T Consensus 330 ~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~ 405 (444)
T 1g41_A 330 RVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMD 405 (444)
T ss_dssp EEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHH
T ss_pred eeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHH
Confidence 57999999999888873 23445666 5789999999985 34667776666665443
No 89
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=83.53 E-value=0.0056 Score=71.24 Aligned_cols=145 Identities=16% Similarity=0.082 Sum_probs=83.3
Q ss_pred hhhHHHhhCCCcEEEEeCCCcccc----c-ccccccC---CCCCCcEEEEeCCCCCChh-------hHHHH-HHHHHHHH
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDEN----S-HGVMGKS---DNHVKPLILIEDVDVFFPE-------DRGFI-AGIQQIAE 71 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~r----n-~~v~gsl---~~~kkkLILIDEVD~Lfee-------DrGf~-~AL~~Lie 71 (712)
.+.++|++++..++.+++++-..+ . ..+...+ ....+.+|+|||+|.++.. ..+.. ..+.+++.
T Consensus 527 Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~ 606 (806)
T 1ypw_A 527 LAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILT 606 (806)
T ss_dssp HHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHH
Confidence 567899999999999999884321 0 0000000 0123579999999998532 11121 22333332
Q ss_pred -------hcCCcEEEEecCCCCCCccccc--c--eeeEEcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH----HcCC
Q 005137 72 -------KAKGPVILTSNSNNITLPDSLD--R--LEVSFTMPMPKDLLSHLQMICAAEKVELQQHLLVQLIE----SCRA 136 (712)
Q Consensus 72 -------kTKrPIILTCND~n~~Lpklls--r--l~IrFkrPs~~eI~srL~~Ic~~EGikId~~~L~~LI~----~S~G 136 (712)
...+-||+++|.+...-+.++. | ..|.|..|+.++....++..+....+. .+..++.|+. .++.
T Consensus 607 ~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sga 685 (806)
T 1ypw_A 607 EMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGA 685 (806)
T ss_dssp TCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC-----CCCCSCSCGGGSSSCCH
T ss_pred HHhcccccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCC-cccCHHHHHHhccccCHH
Confidence 2345677788876532334444 5 578899999888777777655433221 1111233333 4567
Q ss_pred cHHHHHHHHHHHhhcCC
Q 005137 137 DIRKTIMHLQFWCQNKG 153 (712)
Q Consensus 137 DIRqaLN~LQf~s~s~~ 153 (712)
||+.+++.....+....
T Consensus 686 di~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 686 DLTEICQRACKLAIRES 702 (806)
T ss_dssp HHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999888777766543
No 90
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=78.62 E-value=1.4 Score=44.47 Aligned_cols=141 Identities=19% Similarity=0.226 Sum_probs=78.8
Q ss_pred hhhHHHhhCCCcEEEEeCCCcccc----c-ccccccCC----CCCCcEEEEeCCCCCChh----hHHH-HHHHHHHHHh-
Q 005137 8 SLCEAAQHADDEVVEVIHIPDDEN----S-HGVMGKSD----NHVKPLILIEDVDVFFPE----DRGF-IAGIQQIAEK- 72 (712)
Q Consensus 8 ~~~aIAkelGydVIELNASDdR~r----n-~~v~gsl~----~~kkkLILIDEVD~Lfee----DrGf-~~AL~~Liek- 72 (712)
.+.++|.+.+...+.+++++-... . ..+ +.++ ...+.++++||+|.+... +.+. ...+.+++..
T Consensus 60 Lakala~~~~~~~i~i~g~~l~~~~~~~~~~~i-~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~L 138 (274)
T 2x8a_A 60 LAKAVANESGLNFISVKGPELLNMYVGESERAV-RQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEM 138 (274)
T ss_dssp HHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHH-HHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHH-HHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhh
Confidence 456889999999999999873211 0 000 0010 124579999999998542 1111 1122233322
Q ss_pred ----cCCc--EEEEecCCCCCCcc-ccc--c--eeeEEcCCCHHHHHHHHHHHHHHc-CCCCC-HHHHHHHHH------H
Q 005137 73 ----AKGP--VILTSNSNNITLPD-SLD--R--LEVSFTMPMPKDLLSHLQMICAAE-KVELQ-QHLLVQLIE------S 133 (712)
Q Consensus 73 ----TKrP--IILTCND~n~~Lpk-lls--r--l~IrFkrPs~~eI~srL~~Ic~~E-GikId-~~~L~~LI~------~ 133 (712)
.++. +|.++|.+.. +.+ ++. | ..|.|..|+..+-...|+.++... +..++ +-.++.|+. +
T Consensus 139 sgg~~~~~~i~ia~tn~p~~-LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 217 (274)
T 2x8a_A 139 DGLEARQQVFIMAATNRPDI-IDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCY 217 (274)
T ss_dssp HTCCSTTCEEEEEEESCGGG-SCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSC
T ss_pred hcccccCCEEEEeecCChhh-CCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCc
Confidence 1222 4445566543 333 222 3 578899999988888888776542 23332 223555553 5
Q ss_pred cCCcHHHHHHHHHHHhh
Q 005137 134 CRADIRKTIMHLQFWCQ 150 (712)
Q Consensus 134 S~GDIRqaLN~LQf~s~ 150 (712)
++.||...++..-+.+.
T Consensus 218 sgadl~~l~~~a~~~a~ 234 (274)
T 2x8a_A 218 TGADLSALVREASICAL 234 (274)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 67799988776655443
No 91
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=78.56 E-value=3.3 Score=37.97 Aligned_cols=42 Identities=17% Similarity=0.116 Sum_probs=26.0
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHH---hcCCcEEEEecCCC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAE---KAKGPVILTSNSNN 85 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~Lie---kTKrPIILTCND~n 85 (712)
+..+|||||++.... |......+.++++ ...+++|+|+|...
T Consensus 100 ~~~llilDE~~~~~~-~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 100 NSPVLVLDDLGSERL-SDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp TCSEEEEETCSSSCC-CHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred CCCEEEEeCCCCCcC-CHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 468999999984311 2222333444333 34579999999854
No 92
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=77.07 E-value=1.5 Score=39.39 Aligned_cols=72 Identities=10% Similarity=0.014 Sum_probs=43.5
Q ss_pred hhhHHHhhC---CCcEEEEeCCCcccccccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh--cCCcEEEEec
Q 005137 8 SLCEAAQHA---DDEVVEVIHIPDDENSHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK--AKGPVILTSN 82 (712)
Q Consensus 8 ~~~aIAkel---GydVIELNASDdR~rn~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek--TKrPIILTCN 82 (712)
.+.++++.. +..++ +|++..... ....+.+......+|+|||+|.+.... +.+|..++.. ....||+++|
T Consensus 40 lA~~i~~~~~~~~~~~v-~~~~~~~~~-~~~~~~~~~a~~g~l~ldei~~l~~~~---q~~Ll~~l~~~~~~~~~I~~t~ 114 (145)
T 3n70_A 40 GARYLHQFGRNAQGEFV-YRELTPDNA-PQLNDFIALAQGGTLVLSHPEHLTREQ---QYHLVQLQSQEHRPFRLIGIGD 114 (145)
T ss_dssp HHHHHHHSSTTTTSCCE-EEECCTTTS-SCHHHHHHHHTTSCEEEECGGGSCHHH---HHHHHHHHHSSSCSSCEEEEES
T ss_pred HHHHHHHhCCccCCCEE-EECCCCCcc-hhhhcHHHHcCCcEEEEcChHHCCHHH---HHHHHHHHhhcCCCEEEEEECC
Confidence 345666665 67788 998763321 111111111134689999999997753 3455555543 2467999999
Q ss_pred CC
Q 005137 83 SN 84 (712)
Q Consensus 83 D~ 84 (712)
..
T Consensus 115 ~~ 116 (145)
T 3n70_A 115 TS 116 (145)
T ss_dssp SC
T ss_pred cC
Confidence 73
No 93
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=72.64 E-value=5.8 Score=44.62 Aligned_cols=86 Identities=19% Similarity=0.202 Sum_probs=48.6
Q ss_pred CcEEEEeCCCCCChhhHHHHHHHHHHHHhc---------------CCcEEEEecCCC-------------CCCcccccce
Q 005137 44 KPLILIEDVDVFFPEDRGFIAGIQQIAEKA---------------KGPVILTSNSNN-------------ITLPDSLDRL 95 (712)
Q Consensus 44 kkLILIDEVD~LfeeDrGf~~AL~~LiekT---------------KrPIILTCND~n-------------~~Lpkllsrl 95 (712)
+.+++|||+|.+..+++ .+|.++++.. ++-||.++|... ..-+.+++|.
T Consensus 392 ~gil~IDEid~l~~~~q---~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RF 468 (595)
T 3f9v_A 392 GGIAVIDEIDKMRDEDR---VAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRF 468 (595)
T ss_dssp SSEECCTTTTCCCSHHH---HHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGC
T ss_pred CCcEEeehhhhCCHhHh---hhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhC
Confidence 57999999999987654 5677777642 334888888753 2223456774
Q ss_pred --eeEEcCCCHHHHHHHHHHHHHHcC-----CCCCHHHHHHHHH
Q 005137 96 --EVSFTMPMPKDLLSHLQMICAAEK-----VELQQHLLVQLIE 132 (712)
Q Consensus 96 --~IrFkrPs~~eI~srL~~Ic~~EG-----ikId~~~L~~LI~ 132 (712)
.+.+..++..+-...+..+..... -.++.+.|.+++.
T Consensus 469 Dl~~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~ 512 (595)
T 3f9v_A 469 DLIFILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIA 512 (595)
T ss_dssp SCCEEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHH
Confidence 334444333333333344443322 2345555555554
No 94
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=62.46 E-value=5.5 Score=38.18 Aligned_cols=69 Identities=17% Similarity=0.225 Sum_probs=43.1
Q ss_pred CCCcEEEEeCCCCCChhhHHHHHHHHHHHHhcCCcEEE-Eec---CCC-CCCcccccc---eeeEEcCCCHHHHHHHH
Q 005137 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVIL-TSN---SNN-ITLPDSLDR---LEVSFTMPMPKDLLSHL 111 (712)
Q Consensus 42 ~kkkLILIDEVD~LfeeDrGf~~AL~~LiekTKrPIIL-TCN---D~n-~~Lpkllsr---l~IrFkrPs~~eI~srL 111 (712)
..+.++|+||++.|-..|..|+.+|.++++.. .|+|+ |.. +.. ..+.+...+ ..+.+.+-+.+.+...+
T Consensus 104 ~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~-~~~ilgti~vsh~~~~~~vd~i~~~~~~~i~~~~~~nr~~~~~~i 180 (189)
T 2i3b_A 104 PGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP-GTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKENRNHLLPDI 180 (189)
T ss_dssp SCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS-SCCEEEECCCCCSSCCTTHHHHHTTCCSEEEECCSSSGGGHHHHH
T ss_pred cCCCEEEEeCCCccccccHHHHHHHHHHHhCC-CcEEEEEeecCCCCchHHHHHHeecCCcEEEEeChHhHHHHHHHH
Confidence 35689999999888666788999999999854 57776 322 332 112222222 45566655555555444
No 95
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=53.07 E-value=48 Score=37.33 Aligned_cols=89 Identities=17% Similarity=0.132 Sum_probs=54.6
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHh-----------cCCcEEEEecCCC----------CCCc-ccccceeeEE-
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK-----------AKGPVILTSNSNN----------ITLP-DSLDRLEVSF- 99 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~Liek-----------TKrPIILTCND~n----------~~Lp-kllsrl~IrF- 99 (712)
...++++||++.|...++ .+|.+.++. .++-||.++|-.. ..++ .+++|+++.|
T Consensus 300 dgGvl~lDEIn~~~~~~q---saLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i 376 (506)
T 3f8t_A 300 DGGILAVDHLEGAPEPHR---WALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAF 376 (506)
T ss_dssp TTSEEEEECCTTCCHHHH---HHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEE
T ss_pred CCCeeehHhhhhCCHHHH---HHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHhhheeeEEE
Confidence 468999999999987654 677777774 2455888888642 1233 3557754433
Q ss_pred --cCC-------------CHHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHc
Q 005137 100 --TMP-------------MPKDLLSHLQMIC-AAEKVELQQHLLVQLIESC 134 (712)
Q Consensus 100 --krP-------------s~~eI~srL~~Ic-~~EGikId~~~L~~LI~~S 134 (712)
..| +.+.+++++..+- ..-...+++++.+.|+...
T Consensus 377 ~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y 427 (506)
T 3f8t_A 377 LGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWY 427 (506)
T ss_dssp TTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHH
T ss_pred ecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHH
Confidence 223 2345555555443 2236778888777776643
No 96
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=50.44 E-value=43 Score=44.60 Aligned_cols=107 Identities=10% Similarity=0.093 Sum_probs=68.1
Q ss_pred hHHHhhCCCcEEEEeCCCcccc--------c-----ccccccC----CCCCCcEEEEeCCCCCChh---hHHHHHHHHHH
Q 005137 10 CEAAQHADDEVVEVIHIPDDEN--------S-----HGVMGKS----DNHVKPLILIEDVDVFFPE---DRGFIAGIQQI 69 (712)
Q Consensus 10 ~aIAkelGydVIELNASDdR~r--------n-----~~v~gsl----~~~kkkLILIDEVD~Lfee---DrGf~~AL~~L 69 (712)
.++|+..++.++.+|.|...+. . ...+|.+ .++++-+|+|||+|..-.+ .+.-+..|+++
T Consensus 1286 ~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~ 1365 (2695)
T 4akg_A 1286 NALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQL 1365 (2695)
T ss_dssp HHHHSCSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHH
T ss_pred HHHhcCCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecccccccccccCchhHHHHHHHH
Confidence 5577778999999999874311 0 0011211 1334567889999865322 33466777888
Q ss_pred HHhc--------------CCcEEEEecCCC-----CCCcccccc-eeeEEcCCCHHHHHHHHHHHHH
Q 005137 70 AEKA--------------KGPVILTSNSNN-----ITLPDSLDR-LEVSFTMPMPKDLLSHLQMICA 116 (712)
Q Consensus 70 iekT--------------KrPIILTCND~n-----~~Lpkllsr-l~IrFkrPs~~eI~srL~~Ic~ 116 (712)
++.. ++-+|.+||... ..-++++.+ ..|.+..|+.+.+...+..|..
T Consensus 1366 le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1366 MEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp HHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCCCTTTHHHHHHHHHHH
T ss_pred HhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCCCCHHHHHHHHHHHHH
Confidence 7741 134667777752 222344555 6789999999999988888864
No 97
>2lhb_A Hemoglobin V (cyano Met); oxygen transport; HET: HEM; 2.00A {Petromyzon marinus} SCOP: a.1.1.2 PDB: 3lhb_A* 1f5o_A* 1f5p_A* 1uc3_A*
Probab=50.17 E-value=12 Score=34.09 Aligned_cols=59 Identities=10% Similarity=0.218 Sum_probs=39.6
Q ss_pred ccccccccccccccchhhccchhHHHHHHHHHHHHHhc---------------cccccccchhhc-CCC-----------
Q 005137 470 QLMDECSRMDFKRRSKLEELRSQEAIDLVRESWKKLRD---------------GNTDLRQYATLE-KPN----------- 522 (712)
Q Consensus 470 ~~mDecSr~df~~~~~~~~~~~~~~~~~Vq~~W~klr~---------------~~~dl~~~~~~e-~~~----------- 522 (712)
|++|+|++|-+ +..++..|+++|.++.. .||+++.+-..= +.+
T Consensus 1 ~~~~~~~~m~l----------t~~~~~~V~~sw~~v~~~~~~~g~~~~~rlF~~~P~~k~~F~~~~~~~~~~~l~~~~~~ 70 (149)
T 2lhb_A 1 PIVDTGSVAPL----------SAAEKTKIRSAWAPVYSTYETSGVDILVKFFTSTPAAQEFFPKFKGLTTADELKKSADV 70 (149)
T ss_dssp CCCSSSCCCCC----------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCGGGGGGCGGGTTCCSHHHHHTCHHH
T ss_pred CCCCCCCCCCC----------CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHCHhHHHHhhhhcCCCCHHHHhCCHHH
Confidence 57888888742 23456889999988854 689999888631 332
Q ss_pred hhhHHHhhhccccccc
Q 005137 523 AFQIIKLTHGMCDLIS 538 (712)
Q Consensus 523 a~~~~~la~~~snlIS 538 (712)
..+..+++..+...|.
T Consensus 71 ~~h~~~v~~~l~~~v~ 86 (149)
T 2lhb_A 71 RWHAERIINAVDDAVA 86 (149)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 2566667776666654
No 98
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=47.45 E-value=9.7 Score=38.98 Aligned_cols=70 Identities=14% Similarity=0.096 Sum_probs=35.0
Q ss_pred hCCCcEEEEeCCCccc--ccccccccCCC-----CCCcEEEEeCCCCCChh--hHH-HHHHHHHHHHhcCCcEEEEecCC
Q 005137 15 HADDEVVEVIHIPDDE--NSHGVMGKSDN-----HVKPLILIEDVDVFFPE--DRG-FIAGIQQIAEKAKGPVILTSNSN 84 (712)
Q Consensus 15 elGydVIELNASDdR~--rn~~v~gsl~~-----~kkkLILIDEVD~Lfee--DrG-f~~AL~~LiekTKrPIILTCND~ 84 (712)
..|+.|+.+++++-.. +.....+.+.. ....||||||++..... .+. .+..|.......+.|+|+|+|-.
T Consensus 179 ~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~ 258 (308)
T 2qgz_A 179 KKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYS 258 (308)
T ss_dssp HSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSC
T ss_pred hcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCC
Confidence 5578999999875211 11111111100 13579999999765321 121 23323222223467999999974
No 99
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=45.10 E-value=16 Score=33.74 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=23.5
Q ss_pred CcEEEEeCCCCCChhh--HH-HHHHHHHHHHhcCCcEEEEecCC
Q 005137 44 KPLILIEDVDVFFPED--RG-FIAGIQQIAEKAKGPVILTSNSN 84 (712)
Q Consensus 44 kkLILIDEVD~LfeeD--rG-f~~AL~~LiekTKrPIILTCND~ 84 (712)
..+|+|||+|.....+ +. ....+.......+.++|+|+|..
T Consensus 116 ~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 116 VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 4699999998764322 22 33323222223456899999974
No 100
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=44.18 E-value=26 Score=32.40 Aligned_cols=42 Identities=17% Similarity=0.299 Sum_probs=31.5
Q ss_pred CCcEEEEeCCCCCChhh----------HHHHHHHHHHHHhcCCcEEEEecCC
Q 005137 43 VKPLILIEDVDVFFPED----------RGFIAGIQQIAEKAKGPVILTSNSN 84 (712)
Q Consensus 43 kkkLILIDEVD~LfeeD----------rGf~~AL~~LiekTKrPIILTCND~ 84 (712)
+.++|||||...+.+.+ ..++..|.++++...++||+++...
T Consensus 105 ~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~ 156 (220)
T 2cvh_A 105 NFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVH 156 (220)
T ss_dssp TEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred CCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEE
Confidence 47899999999886431 2255667788888889999988653
No 101
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=42.21 E-value=21 Score=33.02 Aligned_cols=42 Identities=17% Similarity=0.172 Sum_probs=31.2
Q ss_pred CCc--EEEEeCCCCCChhh----HHHHHHHHHHHHhcCCcEEEEecCC
Q 005137 43 VKP--LILIEDVDVFFPED----RGFIAGIQQIAEKAKGPVILTSNSN 84 (712)
Q Consensus 43 kkk--LILIDEVD~LfeeD----rGf~~AL~~LiekTKrPIILTCND~ 84 (712)
+.+ +||+||...+...| +.++..|.++++...++||+++.+.
T Consensus 121 ~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 121 GYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp CSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred CCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 456 99999999776333 5567777888777788999999775
No 102
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=41.71 E-value=8.3 Score=35.61 Aligned_cols=39 Identities=15% Similarity=0.369 Sum_probs=27.1
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCcEEEEecC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNS 83 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrPIILTCND 83 (712)
.-++||+||+|.+.+. +|...+..++... ++++|+.+-.
T Consensus 146 ~~~~lViDEah~~~~~--~~~~~l~~i~~~~~~~~~~l~~SAT 186 (206)
T 1vec_A 146 HVQMIVLDEADKLLSQ--DFVQIMEDIILTLPKNRQILLYSAT 186 (206)
T ss_dssp TCCEEEEETHHHHTST--TTHHHHHHHHHHSCTTCEEEEEESC
T ss_pred cCCEEEEEChHHhHhh--CcHHHHHHHHHhCCccceEEEEEee
Confidence 4579999999988753 5666777777654 3566665544
No 103
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=40.94 E-value=10 Score=35.52 Aligned_cols=41 Identities=12% Similarity=0.202 Sum_probs=29.4
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCcEEEEecCC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSN 84 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrPIILTCND~ 84 (712)
.-++||+||+|.+.+ +.|+...+..+++.. ++++|+.+-..
T Consensus 158 ~~~~lViDEah~~~~-~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 200 (220)
T 1t6n_A 158 HIKHFILDECDKMLE-QLDMRRDVQEIFRMTPHEKQVMMFSATL 200 (220)
T ss_dssp TCCEEEEESHHHHHS-SHHHHHHHHHHHHTSCSSSEEEEEESCC
T ss_pred cCCEEEEcCHHHHhc-ccCcHHHHHHHHHhCCCcCeEEEEEeec
Confidence 457999999998864 367888888887754 35566655443
No 104
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=40.66 E-value=1.1e+02 Score=25.20 Aligned_cols=74 Identities=14% Similarity=0.006 Sum_probs=41.8
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHh---cCCcEEEEecCCCCCCcccccc--eeeEEcCCCHHHHHHHHHHHHHH
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK---AKGPVILTSNSNNITLPDSLDR--LEVSFTMPMPKDLLSHLQMICAA 117 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~Liek---TKrPIILTCND~n~~Lpkllsr--l~IrFkrPs~~eI~srL~~Ic~~ 117 (712)
...+||+|-- +.+ ..++..+..+-+. ...|||+++..........+.. ..+-.++.+..++...+..+...
T Consensus 47 ~~dlvi~d~~--l~~--~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~ 122 (133)
T 3nhm_A 47 PPDVLISDVN--MDG--MDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPVPDAYLVKPVKPPVLIAQLHALLAR 122 (133)
T ss_dssp CCSEEEECSS--CSS--SCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC--CCC--CCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhcCCceEEeccCCHHHHHHHHHHHHhh
Confidence 4679999832 221 1234444444332 3689999998754322222322 23444666889999999998876
Q ss_pred cCC
Q 005137 118 EKV 120 (712)
Q Consensus 118 EGi 120 (712)
.+.
T Consensus 123 ~~~ 125 (133)
T 3nhm_A 123 AEA 125 (133)
T ss_dssp HC-
T ss_pred hcc
Confidence 543
No 105
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=37.66 E-value=8.6 Score=36.79 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=27.3
Q ss_pred CCcEEEEeCCCCCChh-hHHHHHHHHHHHHhc---CCcEEEEe
Q 005137 43 VKPLILIEDVDVFFPE-DRGFIAGIQQIAEKA---KGPVILTS 81 (712)
Q Consensus 43 kkkLILIDEVD~Lfee-DrGf~~AL~~LiekT---KrPIILTC 81 (712)
.-++||+||+|.+.+. ..||+..+..++... ++++|+.+
T Consensus 175 ~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~S 217 (245)
T 3dkp_A 175 SVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFS 217 (245)
T ss_dssp TCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEE
T ss_pred cCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEe
Confidence 4578999999999764 367888888887653 34555544
No 106
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=33.39 E-value=34 Score=33.71 Aligned_cols=42 Identities=14% Similarity=0.343 Sum_probs=31.9
Q ss_pred CCcEEEEeCCCCCChhh-------HHHHHHHHHHHHhcCCcEEEEecCC
Q 005137 43 VKPLILIEDVDVFFPED-------RGFIAGIQQIAEKAKGPVILTSNSN 84 (712)
Q Consensus 43 kkkLILIDEVD~LfeeD-------rGf~~AL~~LiekTKrPIILTCND~ 84 (712)
..++|||||+-.+...| +.++..|..+++...++||+++.+.
T Consensus 133 ~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~ 181 (279)
T 1nlf_A 133 GRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHAS 181 (279)
T ss_dssp TCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred CCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 46899999999854322 4566777888888889999999774
No 107
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=33.32 E-value=9.5 Score=36.63 Aligned_cols=39 Identities=26% Similarity=0.409 Sum_probs=26.0
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCcEEEEecC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNS 83 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrPIILTCND 83 (712)
.-++||+||+|.+.+ .||...+..+++.. ++++|+.+-.
T Consensus 173 ~~~~lViDEah~~~~--~~~~~~l~~i~~~~~~~~~~i~~SAT 213 (237)
T 3bor_A 173 WIKMFVLDEADEMLS--RGFKDQIYEIFQKLNTSIQVVLLSAT 213 (237)
T ss_dssp TCCEEEEESHHHHHH--TTCHHHHHHHHHHSCTTCEEEEECSS
T ss_pred cCcEEEECCchHhhc--cCcHHHHHHHHHhCCCCCeEEEEEEe
Confidence 457999999998864 35566677776654 3455555533
No 108
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=30.66 E-value=1.6e+02 Score=24.72 Aligned_cols=72 Identities=14% Similarity=0.124 Sum_probs=38.9
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHh---cCCcEEEEecCCCC-CCcccccc--eeeEEcCCCHHHHHHHHHHHHH
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK---AKGPVILTSNSNNI-TLPDSLDR--LEVSFTMPMPKDLLSHLQMICA 116 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~Liek---TKrPIILTCND~n~-~Lpkllsr--l~IrFkrPs~~eI~srL~~Ic~ 116 (712)
...+||+|-- +.+ ..++..+..+-+. ...|||+++..... .....+.. ..+-.++.+..++..++..+..
T Consensus 46 ~~dlvi~D~~--l~~--~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 121 (140)
T 3n53_A 46 HPDLVILDMD--IIG--ENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLR 121 (140)
T ss_dssp CCSEEEEETT--C--------CHHHHHHTSTTCTTCCEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC--CCC--CcHHHHHHHHHcCcccCCCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHh
Confidence 4679999832 221 2233344444333 46799999877542 22223332 3344456688999999988876
Q ss_pred Hc
Q 005137 117 AE 118 (712)
Q Consensus 117 ~E 118 (712)
..
T Consensus 122 ~~ 123 (140)
T 3n53_A 122 TQ 123 (140)
T ss_dssp HH
T ss_pred hH
Confidence 54
No 109
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=29.25 E-value=2.3e+02 Score=23.54 Aligned_cols=70 Identities=10% Similarity=0.073 Sum_probs=39.6
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHH---hcCCcEEEEecCCCC-CCcccccc--eeeEEcCCCHHHHHHHHHHHHH
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAE---KAKGPVILTSNSNNI-TLPDSLDR--LEVSFTMPMPKDLLSHLQMICA 116 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~Lie---kTKrPIILTCND~n~-~Lpkllsr--l~IrFkrPs~~eI~srL~~Ic~ 116 (712)
...+||+|-- +.+. .++..+..+-+ ....|||+++..... .....+.. ..+-.++.+..++...|..+..
T Consensus 51 ~~dlii~d~~--l~~~--~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 51 FSGVVLLDIM--MPGM--DGWDTIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMG 126 (142)
T ss_dssp CCEEEEEESC--CSSS--CHHHHHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC--CCCC--CHHHHHHHHHhhcccCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHH
Confidence 4689999842 1111 12334444433 245799999877543 22233333 2333455578889888888764
No 110
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=29.18 E-value=27 Score=32.02 Aligned_cols=22 Identities=18% Similarity=0.173 Sum_probs=10.7
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHH
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGI 66 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL 66 (712)
.-.+||+||+|.+.+ .+++..+
T Consensus 162 ~~~~iIiDEah~~~~--~~~~~~~ 183 (216)
T 3b6e_A 162 DFSLIIIDECHHTNK--EAVYNNI 183 (216)
T ss_dssp GCSEEEETTC---------CHHHH
T ss_pred cccEEEEECchhhcc--CCcHHHH
Confidence 347999999999964 3444444
No 111
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=29.13 E-value=48 Score=32.82 Aligned_cols=42 Identities=7% Similarity=0.264 Sum_probs=27.6
Q ss_pred CCcEEEEeCCCCCChh----hH-----HHHHHHHHHHHhcCCcEEEEecCC
Q 005137 43 VKPLILIEDVDVFFPE----DR-----GFIAGIQQIAEKAKGPVILTSNSN 84 (712)
Q Consensus 43 kkkLILIDEVD~Lfee----Dr-----Gf~~AL~~LiekTKrPIILTCND~ 84 (712)
+.++|||||.-.+..+ |+ .++..|.++++...+|||+++.+.
T Consensus 147 ~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~ 197 (296)
T 1cr0_A 147 GCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLK 197 (296)
T ss_dssp CCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred CCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecC
Confidence 5789999999987532 32 245566667777789999999774
No 112
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=29.10 E-value=56 Score=30.58 Aligned_cols=42 Identities=12% Similarity=0.279 Sum_probs=32.7
Q ss_pred CCcEEEEeCCCCCChhh----HHHHHHHHHHHHhcCCcEEEEecCC
Q 005137 43 VKPLILIEDVDVFFPED----RGFIAGIQQIAEKAKGPVILTSNSN 84 (712)
Q Consensus 43 kkkLILIDEVD~LfeeD----rGf~~AL~~LiekTKrPIILTCND~ 84 (712)
+.++|++|++..+..+| +.++..|.++++...++||+++...
T Consensus 128 ~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~ 173 (247)
T 2dr3_A 128 NAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVS 173 (247)
T ss_dssp TCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC
T ss_pred CCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 46799999999987433 4566777888888889999998664
No 113
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=28.35 E-value=41 Score=27.32 Aligned_cols=28 Identities=18% Similarity=0.276 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHHcCCcHHHHHHHHHHH
Q 005137 121 ELQQHLLVQLIESCRADIRKTIMHLQFW 148 (712)
Q Consensus 121 kId~~~L~~LI~~S~GDIRqaLN~LQf~ 148 (712)
.++...|..++..++||+-++|+.|=-.
T Consensus 22 ~ld~~~I~~vL~a~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 22 NMDQEVIRSVLEAQRGNKDAAINSLLQM 49 (59)
T ss_dssp SSCHHHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 5899999999999999999999988443
No 114
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=26.99 E-value=1.7e+02 Score=24.47 Aligned_cols=96 Identities=17% Similarity=0.200 Sum_probs=51.7
Q ss_pred hhCCCcEEEEeCCCcccccccccccCCC-CCCcEEEEeCCCCCChhhHHHHHHHHHHHH---hcCCcEEEEecCCCCC-C
Q 005137 14 QHADDEVVEVIHIPDDENSHGVMGKSDN-HVKPLILIEDVDVFFPEDRGFIAGIQQIAE---KAKGPVILTSNSNNIT-L 88 (712)
Q Consensus 14 kelGydVIELNASDdR~rn~~v~gsl~~-~kkkLILIDEVD~LfeeDrGf~~AL~~Lie---kTKrPIILTCND~n~~-L 88 (712)
+..||+|+..+...+- ...+.. ....+||+|-- | .++..++..+..+-+ ....|||+++...... .
T Consensus 26 ~~~~~~v~~~~~~~~a------~~~l~~~~~~dlvi~D~~--l-~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~ 96 (140)
T 3lua_A 26 NIGEYDFIEVENLKKF------YSIFKDLDSITLIIMDIA--F-PVEKEGLEVLSAIRNNSRTANTPVIIATKSDNPGYR 96 (140)
T ss_dssp HHCCCEEEEECSHHHH------HTTTTTCCCCSEEEECSC--S-SSHHHHHHHHHHHHHSGGGTTCCEEEEESCCCHHHH
T ss_pred hccCccEEEECCHHHH------HHHHhcCCCCcEEEEeCC--C-CCCCcHHHHHHHHHhCcccCCCCEEEEeCCCCHHHH
Confidence 3378888744332211 011222 45789998732 2 213345555555544 3568999999775421 1
Q ss_pred cccccc--eeeEEcCCCHHHHHHHHHHHHHHc
Q 005137 89 PDSLDR--LEVSFTMPMPKDLLSHLQMICAAE 118 (712)
Q Consensus 89 pkllsr--l~IrFkrPs~~eI~srL~~Ic~~E 118 (712)
.+.+.. ..+-.++.+..++...|..+....
T Consensus 97 ~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (140)
T 3lua_A 97 HAALKFKVSDYILKPYPTKRLENSVRSVLKIC 128 (140)
T ss_dssp HHHHHSCCSEEEESSCCTTHHHHHHHHHHCC-
T ss_pred HHHHHcCCCEEEECCCCHHHHHHHHHHHHHhc
Confidence 111211 234445567788998888876544
No 115
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=26.85 E-value=2.4e+02 Score=23.58 Aligned_cols=98 Identities=13% Similarity=0.094 Sum_probs=52.0
Q ss_pred hhCCCcEEEEeCCCcccccccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHh-cCCcEEEEecCCCCC-Cccc
Q 005137 14 QHADDEVVEVIHIPDDENSHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEK-AKGPVILTSNSNNIT-LPDS 91 (712)
Q Consensus 14 kelGydVIELNASDdR~rn~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~Liek-TKrPIILTCND~n~~-Lpkl 91 (712)
+..||.|...+... + ....+......+||+|-- +.++...++..+..+-+. ...|||+++...... ..+.
T Consensus 27 ~~~g~~v~~~~~~~--~----a~~~l~~~~~dlvi~D~~--l~~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~ 98 (136)
T 3kto_A 27 SPLDVTIQCFASAE--S----FMRQQISDDAIGMIIEAH--LEDKKDSGIELLETLVKRGFHLPTIVMASSSDIPTAVRA 98 (136)
T ss_dssp TTSSSEEEEESSHH--H----HTTSCCCTTEEEEEEETT--GGGBTTHHHHHHHHHHHTTCCCCEEEEESSCCHHHHHHH
T ss_pred HHCCcEEEEeCCHH--H----HHHHHhccCCCEEEEeCc--CCCCCccHHHHHHHHHhCCCCCCEEEEEcCCCHHHHHHH
Confidence 44578777543221 1 011122335689999732 222003345555555443 367999998775421 1111
Q ss_pred ccc--eeeEEcCCCHHHHHHHHHHHHHHcC
Q 005137 92 LDR--LEVSFTMPMPKDLLSHLQMICAAEK 119 (712)
Q Consensus 92 lsr--l~IrFkrPs~~eI~srL~~Ic~~EG 119 (712)
+.. ..+-.++.+..++..++..+.....
T Consensus 99 ~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~ 128 (136)
T 3kto_A 99 MRASAADFIEKPFIEHVLVHDVQQIINGAK 128 (136)
T ss_dssp HHTTCSEEEESSBCHHHHHHHHHHHHHHHC
T ss_pred HHcChHHheeCCCCHHHHHHHHHHHHhccC
Confidence 211 3344455688999999998876654
No 116
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=26.80 E-value=77 Score=30.34 Aligned_cols=40 Identities=8% Similarity=0.210 Sum_probs=25.3
Q ss_pred CCcEEEEeCCCCCChhhHHHH-HHHHHHHHhc-CCcEEEEecC
Q 005137 43 VKPLILIEDVDVFFPEDRGFI-AGIQQIAEKA-KGPVILTSNS 83 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~-~AL~~LiekT-KrPIILTCND 83 (712)
.-++|||||+|.+.- |.+|. ..+..++... ++++|+.+-.
T Consensus 176 ~~~~lVlDEah~~~~-~~~~~~~~l~~i~~~~~~~~~il~SAT 217 (235)
T 3llm_A 176 GISHVIVDEIHERDI-NTDFLLVVLRDVVQAYPEVRIVLMSAT 217 (235)
T ss_dssp TCCEEEECCTTSCCH-HHHHHHHHHHHHHHHCTTSEEEEEECS
T ss_pred CCcEEEEECCccCCc-chHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 458999999998633 45665 4556666543 3456665533
No 117
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=26.63 E-value=14 Score=33.99 Aligned_cols=39 Identities=13% Similarity=0.303 Sum_probs=26.0
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCcEEEEecC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNS 83 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrPIILTCND 83 (712)
.-++||+||+|.+.+. |+...+..+++.. .+++|+.+-.
T Consensus 144 ~~~~iViDEah~~~~~--~~~~~~~~i~~~~~~~~~~i~~SAT 184 (207)
T 2gxq_A 144 RVEVAVLDEADEMLSM--GFEEEVEALLSATPPSRQTLLFSAT 184 (207)
T ss_dssp TCSEEEEESHHHHHHT--TCHHHHHHHHHTSCTTSEEEEECSS
T ss_pred hceEEEEEChhHhhcc--chHHHHHHHHHhCCccCeEEEEEEe
Confidence 4589999999988643 4566677776653 3456665544
No 118
>1x9f_D Globin C, hemoglobin chain D1, globin III, extracellular; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_D*
Probab=26.58 E-value=52 Score=29.45 Aligned_cols=47 Identities=13% Similarity=0.091 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhc------------------cccccccchhhc-CCC------hhhHHHhhhccccccch
Q 005137 493 EAIDLVRESWKKLRD------------------GNTDLRQYATLE-KPN------AFQIIKLTHGMCDLISE 539 (712)
Q Consensus 493 ~~~~~Vq~~W~klr~------------------~~~dl~~~~~~e-~~~------a~~~~~la~~~snlISE 539 (712)
.++..|+++|.++.. .||+++.+-..- +.+ ..|..+++..+...|.-
T Consensus 5 ~~~~~V~~sw~~v~~~~~~~~~~g~~~~~~lF~~~P~~k~~F~~~~~~~~~s~~~~~h~~~v~~~l~~~v~~ 76 (140)
T 1x9f_D 5 TESLKVKLQWASAFGHAHERVAFGLELWRDIIDDHPEIKAPFSRVRGDNIYSPEFGAHSQRVLSGLDITISM 76 (140)
T ss_dssp HHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHhChhHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888764 489999888631 222 45667777777766653
No 119
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=25.85 E-value=16 Score=34.48 Aligned_cols=37 Identities=19% Similarity=0.339 Sum_probs=25.4
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhcC--CcEEEEe
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKAK--GPVILTS 81 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekTK--rPIILTC 81 (712)
.-++||+||+|.+.+. ||...+..+++..+ +++|+.+
T Consensus 167 ~~~~lViDEah~~~~~--~~~~~~~~i~~~~~~~~~~l~~S 205 (228)
T 3iuy_A 167 SITYLVIDEADKMLDM--EFEPQIRKILLDVRPDRQTVMTS 205 (228)
T ss_dssp TCCEEEECCHHHHHHT--TCHHHHHHHHHHSCSSCEEEEEE
T ss_pred cceEEEEECHHHHhcc--chHHHHHHHHHhCCcCCeEEEEE
Confidence 4579999999988653 56677777776643 4555544
No 120
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=25.75 E-value=15 Score=34.49 Aligned_cols=40 Identities=20% Similarity=0.468 Sum_probs=27.1
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCcEEEEecCC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNSN 84 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrPIILTCND~ 84 (712)
.-++||+||+|.+.+ .|+...+..+++.. ++++|+.+-..
T Consensus 150 ~~~~lViDEah~~~~--~~~~~~l~~i~~~~~~~~~~l~~SAT~ 191 (219)
T 1q0u_A 150 TAHILVVDEADLMLD--MGFITDVDQIAARMPKDLQMLVFSATI 191 (219)
T ss_dssp GCCEEEECSHHHHHH--TTCHHHHHHHHHTSCTTCEEEEEESCC
T ss_pred cceEEEEcCchHHhh--hChHHHHHHHHHhCCcccEEEEEecCC
Confidence 357999999998864 35667777777764 34555554443
No 121
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=24.88 E-value=15 Score=34.87 Aligned_cols=39 Identities=18% Similarity=0.375 Sum_probs=25.6
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCcEEEEecC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNS 83 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrPIILTCND 83 (712)
.-++||+||+|.+.+ .||...+..+++.. ++++|+.+-.
T Consensus 171 ~~~~lViDEah~~~~--~~~~~~~~~i~~~~~~~~~~l~~SAT 211 (236)
T 2pl3_A 171 DLQMLVLDEADRILD--MGFADTMNAVIENLPKKRQTLLFSAT 211 (236)
T ss_dssp TCCEEEETTHHHHHH--TTTHHHHHHHHHTSCTTSEEEEEESS
T ss_pred cccEEEEeChHHHhc--CCcHHHHHHHHHhCCCCCeEEEEEee
Confidence 457999999998864 35566677776654 3445555433
No 122
>1sct_A Hemoglobin II (carbonmonoxy) (alpha chain); oxygen transport; HET: HEM; 2.00A {Scapharca inaequivalvis} SCOP: a.1.1.2
Probab=24.87 E-value=50 Score=30.01 Aligned_cols=49 Identities=22% Similarity=0.278 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHHHHhc---------------cccccccchhh-cCCC--------hhhHHHhhhccccccch
Q 005137 491 SQEAIDLVRESWKKLRD---------------GNTDLRQYATL-EKPN--------AFQIIKLTHGMCDLISE 539 (712)
Q Consensus 491 ~~~~~~~Vq~~W~klr~---------------~~~dl~~~~~~-e~~~--------a~~~~~la~~~snlISE 539 (712)
+..++..|+++|.++.. .||+++.+-.. .... ..|..+++..+...|.-
T Consensus 12 s~~~~~~v~~sw~~v~~~~~~~g~~~~~rlF~~~P~~k~~F~~~~d~~~~~~n~~~~~h~~~v~~al~~~v~~ 84 (150)
T 1sct_A 12 SEAIKANLRRSWGVLSADIEATGLMLMSNLFTLRPDTKTYFTRLGDVQKGKANSKLRGHAITLTYALNNFVDS 84 (150)
T ss_dssp CHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHCGGGGGGGCTTCCGGGGGGSHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHChhHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999988854 48999988863 1222 25778888887777653
No 123
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=23.77 E-value=20 Score=34.51 Aligned_cols=28 Identities=25% Similarity=0.472 Sum_probs=21.5
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHh
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK 72 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~Liek 72 (712)
.-++||+||+|.+.+. ||...+..+++.
T Consensus 174 ~~~~lViDEah~~~~~--~~~~~~~~i~~~ 201 (253)
T 1wrb_A 174 FCKYIVLDEADRMLDM--GFEPQIRKIIEE 201 (253)
T ss_dssp TCCEEEEETHHHHHHT--TCHHHHHHHHHS
T ss_pred hCCEEEEeCHHHHHhC--chHHHHHHHHhh
Confidence 3479999999998643 567778888774
No 124
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=23.24 E-value=2.3e+02 Score=23.37 Aligned_cols=74 Identities=12% Similarity=0.113 Sum_probs=40.4
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHh-cCCcEEEEecCCCCCC-cccccc--eeeEEcCCCHHHHHHHHHHHHHHc
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK-AKGPVILTSNSNNITL-PDSLDR--LEVSFTMPMPKDLLSHLQMICAAE 118 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~Liek-TKrPIILTCND~n~~L-pkllsr--l~IrFkrPs~~eI~srL~~Ic~~E 118 (712)
...+||+|-- |.+.+ ++..+..+-+. ...|||+++....... ...+.. ..+-.++.+..++..++..+....
T Consensus 47 ~~dlvl~D~~--l~~~~--g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 122 (136)
T 1mvo_A 47 KPDLIVLDVM--LPKLD--GIEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRS 122 (136)
T ss_dssp CCSEEEEESS--CSSSC--HHHHHHHHHHTTCCCCEEEEECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC
T ss_pred CCCEEEEecC--CCCCC--HHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 4579999832 22111 23344444333 4579999887654321 112222 234446667889999998887654
Q ss_pred CC
Q 005137 119 KV 120 (712)
Q Consensus 119 Gi 120 (712)
..
T Consensus 123 ~~ 124 (136)
T 1mvo_A 123 EI 124 (136)
T ss_dssp --
T ss_pred cc
Confidence 43
No 125
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=23.19 E-value=18 Score=35.32 Aligned_cols=37 Identities=14% Similarity=0.253 Sum_probs=25.1
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCcEEEEe
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTS 81 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrPIILTC 81 (712)
.-++||+||+|.+.+. ||...+..+++.. .+++|+.+
T Consensus 186 ~~~~lViDEah~l~~~--~~~~~l~~i~~~~~~~~~~l~~S 224 (249)
T 3ber_A 186 ALKYLVMDEADRILNM--DFETEVDKILKVIPRDRKTFLFS 224 (249)
T ss_dssp TCCEEEECSHHHHHHT--TCHHHHHHHHHSSCSSSEEEEEE
T ss_pred ccCEEEEcChhhhhcc--ChHHHHHHHHHhCCCCCeEEEEe
Confidence 3578999999987654 5667777777654 24455444
No 126
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=22.54 E-value=2.3e+02 Score=23.82 Aligned_cols=72 Identities=11% Similarity=0.070 Sum_probs=41.4
Q ss_pred CCCcEEEEeCCCCCChhhHHHHHHHHHHHHhcCCcEEEEecCCCC-CCcccccc--eeeEEcCCCHHHHHHHHHHHHH
Q 005137 42 HVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSNNI-TLPDSLDR--LEVSFTMPMPKDLLSHLQMICA 116 (712)
Q Consensus 42 ~kkkLILIDEVD~LfeeDrGf~~AL~~LiekTKrPIILTCND~n~-~Lpkllsr--l~IrFkrPs~~eI~srL~~Ic~ 116 (712)
....+||+|-- |.++ ..++..+..+-+....|||+++..... .....+.. ..+-.++.+..++...+..+..
T Consensus 49 ~~~dlvi~D~~--l~~~-~~g~~~~~~l~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 123 (140)
T 3h5i_A 49 WYPDLILMDIE--LGEG-MDGVQTALAIQQISELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALR 123 (140)
T ss_dssp CCCSEEEEESS--CSSS-CCHHHHHHHHHHHCCCCEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEecc--CCCC-CCHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 35689999843 1111 112333334433467899999977653 22333332 3344466678888888887754
No 127
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=22.16 E-value=23 Score=33.16 Aligned_cols=39 Identities=23% Similarity=0.366 Sum_probs=25.6
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCcEEEEecC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTSNS 83 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrPIILTCND 83 (712)
+-.+||+||+|.+.+. |+...+..++... .+++|+.+-.
T Consensus 155 ~~~~iViDEah~~~~~--~~~~~l~~i~~~~~~~~~~i~lSAT 195 (224)
T 1qde_A 155 KIKMFILDEADEMLSS--GFKEQIYQIFTLLPPTTQVVLLSAT 195 (224)
T ss_dssp TCCEEEEETHHHHHHT--TCHHHHHHHHHHSCTTCEEEEEESS
T ss_pred hCcEEEEcChhHHhhh--hhHHHHHHHHHhCCccCeEEEEEee
Confidence 4589999999988653 4556666666653 3445555443
No 128
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=21.95 E-value=61 Score=30.51 Aligned_cols=39 Identities=13% Similarity=0.235 Sum_probs=29.9
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhcCCcEEEEecCCC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSNN 85 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekTKrPIILTCND~n 85 (712)
...+|+||||-.+..+ .+..|..++.. ..|||++..+.+
T Consensus 76 ~~dvviIDE~Q~~~~~---~~~~l~~l~~~-~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPS---LFEVVKDLLDR-GIDVFCAGLDLT 114 (184)
T ss_dssp TEEEEEECCGGGSCTT---HHHHHHHHHHT-TCEEEEEEESBC
T ss_pred CCCEEEEECcccCCHH---HHHHHHHHHHC-CCCEEEEeeccc
Confidence 4579999999887543 66777777776 789999887644
No 129
>2c0k_A Hemoglobin; oxygen transport, heme, iron, metal-binding; HET: HEM; 2.6A {Gasterophilus intestinalis}
Probab=21.78 E-value=50 Score=30.09 Aligned_cols=49 Identities=4% Similarity=0.064 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhc---------------cccccccchhh-cCCCh----------hhHHHhhhccccccchhh
Q 005137 493 EAIDLVRESWKKLRD---------------GNTDLRQYATL-EKPNA----------FQIIKLTHGMCDLISEAD 541 (712)
Q Consensus 493 ~~~~~Vq~~W~klr~---------------~~~dl~~~~~~-e~~~a----------~~~~~la~~~snlISEad 541 (712)
.++..|+.+|.++.. .||+++.+-.. .+... .+..+++..+...|..-|
T Consensus 4 ~~~~~V~~sw~~v~~~~~~~g~~~~~rlF~~~P~~k~~F~~f~~~~~~~l~~~~~~~~h~~~v~~~l~~~v~~ld 78 (151)
T 2c0k_A 4 EEVNDIKRTWEVVAAKMTEAGVEMLKRYFKKYPHNLNHFPWFKEIPFDDLPENARFKTHGTRILRQVDEGVKALS 78 (151)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHCGGGGGGCHHHHTSCGGGGGGCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHCHHHHHHHHHhCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 456788888888754 58999988863 23333 477788887777766555
No 130
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=21.52 E-value=21 Score=35.13 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=25.5
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhc--CCcEEEEe
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKA--KGPVILTS 81 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekT--KrPIILTC 81 (712)
.-++||+||+|.+.+ .||...+..+++.. ++++|+.+
T Consensus 201 ~l~~lViDEah~l~~--~~~~~~l~~i~~~~~~~~q~l~~S 239 (262)
T 3ly5_A 201 NLQCLVIDEADRILD--VGFEEELKQIIKLLPTRRQTMLFS 239 (262)
T ss_dssp TCCEEEECSHHHHHH--TTCHHHHHHHHHHSCSSSEEEEEC
T ss_pred cCCEEEEcChHHHhh--hhHHHHHHHHHHhCCCCCeEEEEE
Confidence 457999999998865 35777777777764 24444443
No 131
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=21.43 E-value=2.6e+02 Score=23.52 Aligned_cols=72 Identities=17% Similarity=0.189 Sum_probs=42.3
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHh-cCCcEEEEecCCCCC-Ccccccc--eeeEEcCCCHHHHHHHHHHHHHHc
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEK-AKGPVILTSNSNNIT-LPDSLDR--LEVSFTMPMPKDLLSHLQMICAAE 118 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~Liek-TKrPIILTCND~n~~-Lpkllsr--l~IrFkrPs~~eI~srL~~Ic~~E 118 (712)
...|||+|-. |. +..++..+..+-+. ...|||+++...+.. ....+.. ..+-.++.+..++...|..+....
T Consensus 67 ~~dlvi~D~~--l~--~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 67 AFDILMIDGA--AL--DTAELAAIEKLSRLHPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp TCSEEEEECT--TC--CHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred CCCEEEEeCC--CC--CccHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 5679999843 22 23345555554443 357999998775421 1112222 334445568889999998887643
No 132
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=21.19 E-value=94 Score=35.07 Aligned_cols=39 Identities=15% Similarity=0.202 Sum_probs=24.6
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHH---HHHHHhcCCcEEEEecCC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGI---QQIAEKAKGPVILTSNSN 84 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL---~~LiekTKrPIILTCND~ 84 (712)
.-++|||||+|.+ |.+|...+ .+.+...++++|+.+-..
T Consensus 277 ~~~~iViDEah~~---~~~~~~~~~~i~~~l~~~~~q~il~SAT~ 318 (618)
T 2whx_A 277 NYNLIVMDEAHFT---DPCSVAARGYISTRVEMGEAAAIFMTATP 318 (618)
T ss_dssp CCSEEEEESTTCC---SHHHHHHHHHHHHHHHHTSCEEEEECSSC
T ss_pred CCeEEEEECCCCC---CccHHHHHHHHHHHhcccCccEEEEECCC
Confidence 4589999999999 44554444 444433456676666443
No 133
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=21.17 E-value=73 Score=29.81 Aligned_cols=41 Identities=15% Similarity=0.367 Sum_probs=27.6
Q ss_pred CCcEEEEeCCCCCChhh--------------HHHHHHHHHHHHhcCCcEEEEecC
Q 005137 43 VKPLILIEDVDVFFPED--------------RGFIAGIQQIAEKAKGPVILTSNS 83 (712)
Q Consensus 43 kkkLILIDEVD~LfeeD--------------rGf~~AL~~LiekTKrPIILTCND 83 (712)
+.++|||||+-.+...+ +.++..|.++++...++||++...
T Consensus 119 ~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~ 173 (243)
T 1n0w_A 119 RYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQV 173 (243)
T ss_dssp CEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC--
T ss_pred CceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeee
Confidence 57899999998775421 224556666777778888888754
No 134
>1x9f_B Erythrocruorin, globin II, extracellular, globin AIII, globin B; crystal, dodecamer, allosteric, oxygen storage/transport complex; HET: HEM; 2.60A {Lumbricus terrestris} SCOP: a.1.1.2 PDB: 2gtl_B*
Probab=21.15 E-value=76 Score=28.59 Aligned_cols=47 Identities=13% Similarity=0.039 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhc------------------cccccccchhhc-CCC------hhhHHHhhhccccccch
Q 005137 493 EAIDLVRESWKKLRD------------------GNTDLRQYATLE-KPN------AFQIIKLTHGMCDLISE 539 (712)
Q Consensus 493 ~~~~~Vq~~W~klr~------------------~~~dl~~~~~~e-~~~------a~~~~~la~~~snlISE 539 (712)
.++..||.+|.++.. .||+++.+-..- +.+ ..|..+++..+...|.-
T Consensus 7 ~~~~~V~~sw~~v~~~~~~~~~~g~~~y~rlF~~~P~~k~~F~~~~~~~~~s~~~~~h~~~v~~~l~~~v~~ 78 (145)
T 1x9f_B 7 LEGLKVKSEWGRAYGSGHDREAFSQAIWRATFAQVPESRSLFKRVHGDDTSHPAFIAHADRVLGGLDIAIST 78 (145)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTTCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHhChHHHHHhHhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888853 479999888631 222 35677777777766653
No 135
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=20.76 E-value=1.1e+02 Score=32.58 Aligned_cols=41 Identities=10% Similarity=0.129 Sum_probs=23.6
Q ss_pred CCcEEEEeCCCCCChhhHHHHHHHHHHHHhcCCcEEEEecC
Q 005137 43 VKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNS 83 (712)
Q Consensus 43 kkkLILIDEVD~LfeeDrGf~~AL~~LiekTKrPIILTCND 83 (712)
.-.+|||||+|.+...-......+..+.....+++|+.+-.
T Consensus 93 ~l~~vViDEaH~~~~~~~~~~~~l~~~~~~~~~~~l~~SAT 133 (431)
T 2v6i_A 93 NYNLYIMDEAHFLDPASVAARGYIETRVSMGDAGAIFMTAT 133 (431)
T ss_dssp CCSEEEEESTTCCSHHHHHHHHHHHHHHHTTSCEEEEEESS
T ss_pred CCCEEEEeCCccCCccHHHHHHHHHHHhhCCCCcEEEEeCC
Confidence 45899999999984221122334444444445666655544
No 136
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=20.62 E-value=1.2e+02 Score=25.11 Aligned_cols=93 Identities=13% Similarity=0.099 Sum_probs=49.7
Q ss_pred hhCCCcEEEEeCCCcccccccccccCCCCCCcEEEEeCCCCCChhhHHHHHHHHHHHHhcCCcEEEEecCCCCC-Ccccc
Q 005137 14 QHADDEVVEVIHIPDDENSHGVMGKSDNHVKPLILIEDVDVFFPEDRGFIAGIQQIAEKAKGPVILTSNSNNIT-LPDSL 92 (712)
Q Consensus 14 kelGydVIELNASDdR~rn~~v~gsl~~~kkkLILIDEVD~LfeeDrGf~~AL~~LiekTKrPIILTCND~n~~-Lpkll 92 (712)
+..||.|.. +.+..+--. .+......+||+|=- |.+ ..++..+..+-+....|||+++...... ....+
T Consensus 23 ~~~g~~v~~--~~~~~~al~----~~~~~~~dlii~D~~--~p~--~~g~~~~~~lr~~~~~~ii~~t~~~~~~~~~~~~ 92 (120)
T 3f6p_A 23 RKEGYEVHC--AHDGNEAVE----MVEELQPDLILLDIM--LPN--KDGVEVCREVRKKYDMPIIMLTAKDSEIDKVIGL 92 (120)
T ss_dssp HHTTCEEEE--ESSHHHHHH----HHHTTCCSEEEEETT--STT--THHHHHHHHHHTTCCSCEEEEEESSCHHHHHHHH
T ss_pred HhCCEEEEE--eCCHHHHHH----HHhhCCCCEEEEeCC--CCC--CCHHHHHHHHHhcCCCCEEEEECCCChHHHHHHH
Confidence 456888765 333221000 111235689999842 222 2345555555445578999988764321 11112
Q ss_pred cc--eeeEEcCCCHHHHHHHHHHHHH
Q 005137 93 DR--LEVSFTMPMPKDLLSHLQMICA 116 (712)
Q Consensus 93 sr--l~IrFkrPs~~eI~srL~~Ic~ 116 (712)
.. ..+-.++.+..++..++..+..
T Consensus 93 ~~ga~~~l~KP~~~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 93 EIGADDYVTKPFSTRELLARVKANLR 118 (120)
T ss_dssp HTTCCEEEEESCCHHHHHHHHHHHHT
T ss_pred hCCcceeEcCCCCHHHHHHHHHHHHh
Confidence 21 3344466678888888877653
No 137
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=20.00 E-value=93 Score=33.31 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=30.7
Q ss_pred CCcEEEEeCCCCCChh------h----HHHHHHHHHHHHhcCCcEEEEec
Q 005137 43 VKPLILIEDVDVFFPE------D----RGFIAGIQQIAEKAKGPVILTSN 82 (712)
Q Consensus 43 kkkLILIDEVD~Lfee------D----rGf~~AL~~LiekTKrPIILTCN 82 (712)
+.++||||++..+... + ..+...|..+++...+|||+++-
T Consensus 313 ~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sq 362 (454)
T 2r6a_A 313 GLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQ 362 (454)
T ss_dssp CCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 4689999999998632 2 23456677778888999999985
Done!