Query 005138
Match_columns 712
No_of_seqs 545 out of 1828
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 18:40:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005138.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005138hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2203 GTP-binding protein [G 100.0 9E-158 2E-162 1265.3 53.0 689 8-711 5-699 (772)
2 PF05879 RHD3: Root hair defec 100.0 7E-144 2E-148 1262.2 55.9 661 46-712 1-680 (742)
3 COG1126 GlnQ ABC-type polar am 100.0 1.2E-32 2.6E-37 272.8 11.7 178 9-204 2-226 (240)
4 COG1120 FepC ABC-type cobalami 100.0 7.7E-32 1.7E-36 278.2 13.0 195 9-220 2-245 (258)
5 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 4.5E-30 9.7E-35 264.0 12.7 188 7-213 2-237 (254)
6 COG1127 Ttg2A ABC-type transpo 100.0 2.9E-29 6.3E-34 252.2 11.4 189 7-213 6-247 (263)
7 COG1125 OpuBA ABC-type proline 100.0 6.6E-30 1.4E-34 258.0 6.8 179 9-204 1-226 (309)
8 COG1135 AbcC ABC-type metal io 100.0 5E-29 1.1E-33 258.4 9.5 180 9-205 1-233 (339)
9 COG3842 PotA ABC-type spermidi 100.0 1.2E-28 2.6E-33 264.9 12.4 181 7-204 3-227 (352)
10 COG1116 TauB ABC-type nitrate/ 100.0 1.8E-28 4E-33 249.3 10.6 166 8-189 2-207 (248)
11 COG1124 DppF ABC-type dipeptid 100.0 2.4E-28 5.1E-33 246.6 10.6 180 8-204 2-232 (252)
12 COG3839 MalK ABC-type sugar tr 99.9 2E-28 4.2E-33 261.9 9.6 181 7-204 1-224 (338)
13 COG3638 ABC-type phosphate/pho 99.9 3.5E-28 7.5E-33 243.9 9.2 188 8-213 2-246 (258)
14 COG1118 CysA ABC-type sulfate/ 99.9 3.7E-28 8E-33 251.4 8.5 181 8-205 1-229 (345)
15 COG4555 NatA ABC-type Na+ tran 99.9 2.9E-28 6.3E-33 238.6 6.5 176 9-203 1-222 (245)
16 COG1131 CcmA ABC-type multidru 99.9 1.5E-27 3.3E-32 254.0 10.1 177 8-201 3-224 (293)
17 COG4604 CeuD ABC-type enteroch 99.9 7.9E-28 1.7E-32 234.7 6.5 191 9-217 1-239 (252)
18 COG0411 LivG ABC-type branched 99.9 7.6E-28 1.6E-32 243.1 5.7 185 8-209 3-245 (250)
19 PRK13537 nodulation ABC transp 99.9 4.3E-27 9.2E-32 252.3 10.9 178 8-203 6-227 (306)
20 PRK11650 ugpC glycerol-3-phosp 99.9 4.2E-27 9.1E-32 257.0 10.8 180 8-204 2-225 (356)
21 PRK13536 nodulation factor exp 99.9 5.8E-27 1.3E-31 254.4 11.0 179 7-203 39-261 (340)
22 COG1122 CbiO ABC-type cobalt t 99.9 4.7E-27 1E-31 241.8 9.5 180 8-204 2-229 (235)
23 PRK11432 fbpC ferric transport 99.9 7.6E-27 1.6E-31 254.5 11.3 181 7-204 4-227 (351)
24 TIGR03265 PhnT2 putative 2-ami 99.9 6.8E-27 1.5E-31 255.1 10.8 181 7-204 2-225 (353)
25 COG1136 SalX ABC-type antimicr 99.9 1.3E-26 2.7E-31 235.3 11.9 166 9-192 1-220 (226)
26 COG4559 ABC-type hemin transpo 99.9 1.7E-26 3.6E-31 227.9 10.5 193 9-219 1-246 (259)
27 TIGR02314 ABC_MetN D-methionin 99.9 1.6E-26 3.4E-31 251.0 11.3 178 9-203 1-230 (343)
28 COG0410 LivF ABC-type branched 99.9 1.4E-26 3E-31 232.3 9.6 184 8-208 2-231 (237)
29 PRK09452 potA putrescine/sperm 99.9 1.7E-26 3.6E-31 253.6 11.0 182 6-204 11-235 (375)
30 PRK09536 btuD corrinoid ABC tr 99.9 1.9E-26 4.1E-31 254.8 10.7 190 8-215 2-240 (402)
31 COG3840 ThiQ ABC-type thiamine 99.9 3E-26 6.5E-31 221.2 9.9 177 9-204 1-220 (231)
32 TIGR03258 PhnT 2-aminoethylpho 99.9 3.4E-26 7.4E-31 250.2 10.8 182 6-204 2-229 (362)
33 PRK11000 maltose/maltodextrin 99.9 3.3E-26 7.2E-31 251.3 10.7 179 8-203 2-223 (369)
34 cd03296 ABC_CysA_sulfate_impor 99.9 5.6E-26 1.2E-30 234.9 11.7 178 9-203 2-226 (239)
35 PRK10851 sulfate/thiosulfate t 99.9 3.9E-26 8.4E-31 249.2 11.1 179 9-204 2-227 (353)
36 COG2884 FtsE Predicted ATPase 99.9 2.9E-26 6.3E-31 222.9 8.8 171 9-197 1-220 (223)
37 PRK11607 potG putrescine trans 99.9 5.2E-26 1.1E-30 250.0 11.3 181 7-204 17-240 (377)
38 cd03261 ABC_Org_Solvent_Resist 99.9 6.5E-26 1.4E-30 233.7 10.4 176 10-202 1-225 (235)
39 COG1117 PstB ABC-type phosphat 99.9 5.1E-26 1.1E-30 224.9 9.1 179 7-205 5-239 (253)
40 COG4175 ProV ABC-type proline/ 99.9 4.3E-26 9.4E-31 236.3 8.9 180 8-204 3-255 (386)
41 cd03218 ABC_YhbG The ABC trans 99.9 9.7E-26 2.1E-30 231.7 11.3 177 10-204 1-223 (232)
42 TIGR01288 nodI ATP-binding ABC 99.9 6.7E-26 1.4E-30 242.7 10.5 177 8-202 3-223 (303)
43 cd03259 ABC_Carb_Solutes_like 99.9 8.9E-26 1.9E-30 229.1 10.5 170 10-196 1-213 (213)
44 COG4152 ABC-type uncharacteriz 99.9 5.7E-26 1.2E-30 228.2 8.5 177 8-202 1-218 (300)
45 cd03265 ABC_DrrA DrrA is the A 99.9 1.4E-25 3E-30 229.0 10.7 173 10-199 1-217 (220)
46 PRK11614 livF leucine/isoleuci 99.9 1.6E-25 3.5E-30 231.1 11.0 180 7-204 3-227 (237)
47 PRK11153 metN DL-methionine tr 99.9 1.6E-25 3.4E-30 243.8 10.8 178 9-203 1-230 (343)
48 TIGR03864 PQQ_ABC_ATP ABC tran 99.9 2.3E-25 5E-30 229.8 11.4 176 9-202 1-220 (236)
49 cd03258 ABC_MetN_methionine_tr 99.9 2E-25 4.4E-30 229.6 10.6 177 9-202 1-229 (233)
50 COG1137 YhbG ABC-type (unclass 99.9 2.7E-26 5.9E-31 224.6 3.9 187 7-211 2-236 (243)
51 cd03301 ABC_MalK_N The N-termi 99.9 2.6E-25 5.6E-30 225.6 10.8 170 10-196 1-213 (213)
52 COG4598 HisP ABC-type histidin 99.9 2E-25 4.4E-30 214.8 9.4 180 8-205 5-243 (256)
53 PRK10895 lipopolysaccharide AB 99.9 2.6E-25 5.7E-30 230.0 11.0 179 8-204 2-227 (241)
54 TIGR03522 GldA_ABC_ATP gliding 99.9 2.2E-25 4.8E-30 238.5 10.6 175 9-202 2-220 (301)
55 TIGR02315 ABC_phnC phosphonate 99.9 3E-25 6.5E-30 229.6 11.2 176 9-201 1-233 (243)
56 PRK11247 ssuB aliphatic sulfon 99.9 4.1E-25 8.8E-30 231.4 11.9 176 7-199 10-219 (257)
57 cd03293 ABC_NrtD_SsuB_transpor 99.9 3.8E-25 8.2E-30 225.8 11.1 173 10-198 1-218 (220)
58 PRK09544 znuC high-affinity zi 99.9 4.4E-25 9.5E-30 230.3 11.8 188 8-213 3-219 (251)
59 PRK13637 cbiO cobalt transport 99.9 4.2E-25 9.2E-30 234.8 11.5 179 9-204 2-235 (287)
60 PRK11831 putative ABC transpor 99.9 4.2E-25 9E-30 232.6 11.2 179 7-202 5-232 (269)
61 PRK11300 livG leucine/isoleuci 99.9 5.5E-25 1.2E-29 229.4 12.0 178 9-203 5-243 (255)
62 PRK11144 modC molybdate transp 99.9 3.6E-25 7.7E-30 241.8 11.0 179 9-206 1-221 (352)
63 cd03268 ABC_BcrA_bacitracin_re 99.9 4.5E-25 9.8E-30 223.2 10.9 169 10-196 1-208 (208)
64 PRK13646 cbiO cobalt transport 99.9 3.5E-25 7.6E-30 235.3 10.5 179 9-204 2-236 (286)
65 PRK11231 fecE iron-dicitrate t 99.9 5.5E-25 1.2E-29 229.7 11.7 186 9-212 2-236 (255)
66 PRK11264 putative amino-acid A 99.9 4.6E-25 9.9E-30 229.3 11.0 176 9-202 3-232 (250)
67 PRK13651 cobalt transporter AT 99.9 4.5E-25 9.7E-30 236.5 11.2 178 9-204 2-255 (305)
68 cd03256 ABC_PhnC_transporter A 99.9 4.3E-25 9.3E-30 228.1 10.6 175 10-201 1-232 (241)
69 PRK14250 phosphate ABC transpo 99.9 7.8E-25 1.7E-29 226.8 12.2 179 7-203 1-221 (241)
70 PRK10771 thiQ thiamine transpo 99.9 5.9E-25 1.3E-29 226.3 11.2 181 9-207 1-223 (232)
71 TIGR03410 urea_trans_UrtE urea 99.9 5.6E-25 1.2E-29 225.9 10.9 175 10-201 1-219 (230)
72 cd03266 ABC_NatA_sodium_export 99.9 7E-25 1.5E-29 223.3 11.2 169 9-195 1-217 (218)
73 PRK13643 cbiO cobalt transport 99.9 4.2E-25 9E-30 235.0 9.9 177 9-204 1-234 (288)
74 PRK13548 hmuV hemin importer A 99.9 6E-25 1.3E-29 230.0 10.8 178 9-203 2-230 (258)
75 TIGR00960 3a0501s02 Type II (G 99.9 5.3E-25 1.1E-29 224.0 9.8 166 9-192 1-216 (216)
76 PRK13647 cbiO cobalt transport 99.9 5.8E-25 1.2E-29 232.2 10.4 174 8-199 3-223 (274)
77 PRK10253 iron-enterobactin tra 99.9 5.7E-25 1.2E-29 231.1 10.3 181 6-203 4-233 (265)
78 cd03224 ABC_TM1139_LivF_branch 99.9 6.5E-25 1.4E-29 224.0 10.3 174 10-201 1-219 (222)
79 PRK10575 iron-hydroxamate tran 99.9 6.3E-25 1.4E-29 230.7 10.5 187 8-211 10-245 (265)
80 cd03216 ABC_Carb_Monos_I This 99.9 8.1E-25 1.8E-29 213.7 10.5 158 10-194 1-162 (163)
81 PRK11248 tauB taurine transpor 99.9 1.1E-24 2.4E-29 227.8 12.2 175 9-199 1-216 (255)
82 PRK13638 cbiO cobalt transport 99.9 5E-25 1.1E-29 232.2 9.7 178 9-204 1-226 (271)
83 PRK09493 glnQ glutamine ABC tr 99.9 7.6E-25 1.6E-29 226.5 10.8 177 9-203 1-225 (240)
84 PRK15079 oligopeptide ABC tran 99.9 6.8E-25 1.5E-29 237.5 10.7 181 7-204 6-252 (331)
85 PRK13634 cbiO cobalt transport 99.9 6.3E-25 1.4E-29 233.8 10.2 179 9-204 2-236 (290)
86 PRK11022 dppD dipeptide transp 99.9 9.2E-25 2E-29 236.1 11.6 182 9-203 3-243 (326)
87 cd03263 ABC_subfamily_A The AB 99.9 9.3E-25 2E-29 222.6 10.7 172 10-200 1-218 (220)
88 PRK13652 cbiO cobalt transport 99.9 8.6E-25 1.9E-29 231.2 10.6 179 8-203 2-227 (277)
89 cd03219 ABC_Mj1267_LivG_branch 99.9 9.2E-25 2E-29 225.0 10.3 175 10-202 1-231 (236)
90 TIGR01188 drrA daunorubicin re 99.9 5.3E-25 1.2E-29 235.7 8.9 167 18-202 2-212 (302)
91 TIGR01186 proV glycine betaine 99.9 4.9E-25 1.1E-29 240.8 8.8 171 17-204 1-220 (363)
92 PRK11308 dppF dipeptide transp 99.9 9.5E-25 2E-29 236.1 10.7 179 8-203 4-244 (327)
93 TIGR03411 urea_trans_UrtD urea 99.9 1.4E-24 3.1E-29 224.6 11.2 176 9-203 2-231 (242)
94 PRK10070 glycine betaine trans 99.9 9.7E-25 2.1E-29 241.1 10.5 179 8-203 3-254 (400)
95 PRK13641 cbiO cobalt transport 99.9 1.1E-24 2.4E-29 231.5 10.6 177 9-203 2-234 (287)
96 cd03257 ABC_NikE_OppD_transpor 99.9 1.6E-24 3.4E-29 221.8 11.3 171 9-196 1-228 (228)
97 PRK13650 cbiO cobalt transport 99.9 1.4E-24 3.1E-29 229.8 11.2 178 8-204 3-230 (279)
98 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.9 9.2E-25 2E-29 222.4 9.2 165 10-192 1-218 (218)
99 PRK11629 lolD lipoprotein tran 99.9 2E-24 4.3E-29 222.5 11.7 172 8-197 4-228 (233)
100 cd03269 ABC_putative_ATPase Th 99.9 1.4E-24 3E-29 219.9 10.4 168 10-195 1-209 (210)
101 cd03298 ABC_ThiQ_thiamine_tran 99.9 1.5E-24 3.3E-29 219.8 10.5 168 10-195 1-210 (211)
102 PRK15112 antimicrobial peptide 99.9 1.4E-24 2.9E-29 228.5 10.3 177 9-202 4-238 (267)
103 PRK11124 artP arginine transpo 99.9 1.7E-24 3.7E-29 224.1 10.8 174 9-200 2-227 (242)
104 PRK13633 cobalt transporter AT 99.9 1.9E-24 4E-29 229.0 11.2 179 8-204 3-234 (280)
105 PRK15439 autoinducer 2 ABC tra 99.9 2.4E-24 5.3E-29 246.3 12.8 179 7-203 9-229 (510)
106 PRK13636 cbiO cobalt transport 99.9 1.5E-24 3.2E-29 230.2 10.2 180 8-204 4-232 (283)
107 PRK10619 histidine/lysine/argi 99.9 2.1E-24 4.5E-29 225.6 11.2 176 9-202 5-240 (257)
108 PRK13631 cbiO cobalt transport 99.9 2.2E-24 4.7E-29 232.6 11.5 180 8-205 20-267 (320)
109 TIGR03005 ectoine_ehuA ectoine 99.9 2E-24 4.3E-29 225.1 10.7 176 10-202 1-235 (252)
110 PRK15093 antimicrobial peptide 99.9 2E-24 4.4E-29 233.9 11.2 183 8-203 2-248 (330)
111 cd03214 ABC_Iron-Siderophores_ 99.9 1.4E-24 3E-29 215.2 9.1 165 11-195 1-179 (180)
112 TIGR03740 galliderm_ABC gallid 99.9 3.3E-24 7.2E-29 219.3 12.0 172 10-199 1-209 (223)
113 COG1123 ATPase components of v 99.9 1.7E-24 3.7E-29 242.1 10.6 180 8-204 279-520 (539)
114 PRK10584 putative ABC transpor 99.9 3.1E-24 6.7E-29 220.1 11.7 169 8-194 5-226 (228)
115 TIGR02769 nickel_nikE nickel i 99.9 2.4E-24 5.2E-29 226.3 11.0 177 9-202 2-239 (265)
116 PRK13648 cbiO cobalt transport 99.9 3E-24 6.6E-29 226.0 11.8 179 8-204 6-232 (269)
117 cd03229 ABC_Class3 This class 99.9 1.5E-24 3.2E-29 214.6 8.7 164 10-191 1-178 (178)
118 COG1129 MglA ABC-type sugar tr 99.9 3E-24 6.5E-29 238.7 12.0 174 7-198 6-229 (500)
119 TIGR02673 FtsE cell division A 99.9 2.5E-24 5.3E-29 218.6 10.3 165 9-191 1-214 (214)
120 cd03295 ABC_OpuCA_Osmoprotecti 99.9 2.2E-24 4.7E-29 223.4 10.1 175 10-201 1-223 (242)
121 cd03226 ABC_cobalt_CbiO_domain 99.9 2.1E-24 4.5E-29 218.0 9.6 164 12-193 2-205 (205)
122 PRK14242 phosphate transporter 99.9 3.3E-24 7.1E-29 223.4 11.4 181 8-203 5-237 (253)
123 cd03230 ABC_DR_subfamily_A Thi 99.9 2.3E-24 4.9E-29 212.3 9.6 165 10-192 1-173 (173)
124 PRK09473 oppD oligopeptide tra 99.9 2.2E-24 4.9E-29 233.5 10.4 182 6-204 9-252 (330)
125 PRK09984 phosphonate/organopho 99.9 3.5E-24 7.5E-29 224.6 11.0 176 8-200 3-239 (262)
126 TIGR02211 LolD_lipo_ex lipopro 99.9 3.3E-24 7.2E-29 218.7 10.6 167 9-193 1-220 (221)
127 TIGR03873 F420-0_ABC_ATP propo 99.9 2.8E-24 6E-29 224.6 10.2 185 10-212 2-235 (256)
128 cd03215 ABC_Carb_Monos_II This 99.9 2.7E-24 5.7E-29 213.5 9.6 162 9-192 4-182 (182)
129 TIGR01277 thiQ thiamine ABC tr 99.9 5.1E-24 1.1E-28 216.5 11.6 170 10-197 1-212 (213)
130 PRK11701 phnK phosphonate C-P 99.9 4.7E-24 1E-28 223.1 11.7 177 9-202 6-240 (258)
131 PRK10938 putative molybdenum t 99.9 3.2E-24 6.9E-29 244.1 11.2 177 9-203 3-224 (490)
132 TIGR03415 ABC_choXWV_ATP choli 99.9 3E-24 6.4E-29 235.8 10.6 164 23-203 39-254 (382)
133 PRK13635 cbiO cobalt transport 99.9 4.6E-24 9.9E-29 226.0 11.6 178 8-203 4-229 (279)
134 PRK13649 cbiO cobalt transport 99.9 2.9E-24 6.3E-29 227.4 9.9 177 9-203 2-234 (280)
135 PRK14268 phosphate ABC transpo 99.9 5E-24 1.1E-28 222.9 11.6 178 7-203 10-242 (258)
136 PRK13644 cbiO cobalt transport 99.9 3.5E-24 7.6E-29 226.3 10.5 177 9-204 1-225 (274)
137 cd03294 ABC_Pro_Gly_Bertaine T 99.9 2.1E-24 4.5E-29 227.4 8.5 175 11-202 26-249 (269)
138 PRK10418 nikD nickel transport 99.9 5.1E-24 1.1E-28 222.4 11.4 178 8-202 3-229 (254)
139 TIGR02142 modC_ABC molybdenum 99.9 4.1E-24 8.8E-29 233.7 11.1 174 14-205 4-223 (354)
140 COG4608 AppF ABC-type oligopep 99.9 4.2E-24 9E-29 220.1 10.4 180 7-203 2-199 (268)
141 PRK10908 cell division protein 99.9 5.2E-24 1.1E-28 217.7 11.0 168 9-194 1-217 (222)
142 PRK13645 cbiO cobalt transport 99.9 3.6E-24 7.8E-29 227.8 9.9 178 9-203 6-240 (289)
143 PRK14247 phosphate ABC transpo 99.9 6.1E-24 1.3E-28 221.0 11.1 176 8-202 2-233 (250)
144 cd03246 ABCC_Protease_Secretio 99.9 4.3E-24 9.2E-29 210.4 9.2 162 10-192 1-173 (173)
145 COG0444 DppD ABC-type dipeptid 99.9 4.6E-24 9.9E-29 224.1 9.5 178 10-204 2-244 (316)
146 PRK10419 nikE nickel transport 99.9 7.4E-24 1.6E-28 223.1 11.1 178 8-202 2-240 (268)
147 cd03262 ABC_HisP_GlnQ_permease 99.9 5.4E-24 1.2E-28 215.8 9.6 165 10-192 1-213 (213)
148 cd03297 ABC_ModC_molybdenum_tr 99.9 6.2E-24 1.3E-28 215.9 10.0 164 14-196 5-214 (214)
149 cd03292 ABC_FtsE_transporter F 99.9 5.2E-24 1.1E-28 216.1 9.4 165 10-192 1-214 (214)
150 PRK10744 pstB phosphate transp 99.9 6.9E-24 1.5E-28 222.1 10.6 177 7-203 11-244 (260)
151 cd03299 ABC_ModC_like Archeal 99.9 7.9E-24 1.7E-28 218.5 10.7 176 10-202 1-218 (235)
152 PRK13639 cbiO cobalt transport 99.9 6.5E-24 1.4E-28 224.3 10.1 177 9-203 1-226 (275)
153 PRK09700 D-allose transporter 99.9 8.2E-24 1.8E-28 241.9 11.8 177 8-202 4-233 (510)
154 cd03267 ABC_NatA_like Similar 99.9 6.8E-24 1.5E-28 219.2 10.0 158 22-196 35-236 (236)
155 TIGR02323 CP_lyasePhnK phospho 99.9 7.2E-24 1.6E-28 220.9 10.1 178 8-202 2-237 (253)
156 PRK14273 phosphate ABC transpo 99.9 1.1E-23 2.5E-28 219.6 11.5 178 7-203 5-238 (254)
157 PRK13632 cbiO cobalt transport 99.9 1.1E-23 2.3E-28 222.2 11.3 179 8-204 6-232 (271)
158 COG4525 TauB ABC-type taurine 99.9 7E-24 1.5E-28 206.8 9.0 176 7-198 1-219 (259)
159 PRK13642 cbiO cobalt transport 99.9 1.1E-23 2.3E-28 222.9 11.2 178 8-203 3-229 (277)
160 TIGR00972 3a0107s01c2 phosphat 99.9 9.6E-24 2.1E-28 219.3 10.7 174 9-202 1-231 (247)
161 PRK14267 phosphate ABC transpo 99.9 1.1E-23 2.4E-28 219.5 11.2 177 8-203 3-237 (253)
162 PRK15056 manganese/iron transp 99.9 1.8E-23 3.9E-28 220.5 12.8 177 9-204 6-231 (272)
163 PRK13547 hmuV hemin importer A 99.9 1.2E-23 2.7E-28 221.9 11.4 187 9-212 1-253 (272)
164 TIGR00968 3a0106s01 sulfate AB 99.9 1.1E-23 2.5E-28 217.6 10.9 176 10-202 1-219 (237)
165 cd03264 ABC_drug_resistance_li 99.9 1E-23 2.2E-28 213.8 10.3 167 10-196 1-211 (211)
166 cd03247 ABCC_cytochrome_bd The 99.9 2E-23 4.4E-28 206.4 12.2 165 10-195 1-177 (178)
167 TIGR01978 sufC FeS assembly AT 99.9 1.3E-23 2.9E-28 217.2 11.2 174 10-199 1-230 (243)
168 cd03260 ABC_PstB_phosphate_tra 99.9 8.3E-24 1.8E-28 216.8 9.6 175 10-200 1-226 (227)
169 cd03217 ABC_FeS_Assembly ABC-t 99.9 1.4E-23 3E-28 211.5 11.0 168 10-197 1-188 (200)
170 cd03232 ABC_PDR_domain2 The pl 99.9 1.4E-23 3E-28 210.3 10.9 171 9-196 3-192 (192)
171 PRK10247 putative ABC transpor 99.9 9.1E-24 2E-28 216.6 9.8 172 8-197 6-221 (225)
172 PRK10762 D-ribose transporter 99.9 1.2E-23 2.7E-28 240.0 11.4 176 8-201 3-228 (501)
173 cd03235 ABC_Metallic_Cations A 99.9 1.1E-23 2.4E-28 213.8 9.8 165 12-195 2-212 (213)
174 PRK13549 xylose transporter AT 99.9 9.7E-24 2.1E-28 241.2 10.5 177 8-202 4-231 (506)
175 cd03225 ABC_cobalt_CbiO_domain 99.9 6.4E-24 1.4E-28 215.1 8.0 163 11-191 1-211 (211)
176 PRK14258 phosphate ABC transpo 99.9 2E-23 4.2E-28 218.9 11.7 180 8-204 6-246 (261)
177 PRK13640 cbiO cobalt transport 99.9 1.5E-23 3.3E-28 222.4 11.0 178 9-204 5-233 (282)
178 cd03300 ABC_PotA_N PotA is an 99.9 1.5E-23 3.3E-28 215.8 10.5 176 10-202 1-219 (232)
179 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.9 4.9E-24 1.1E-28 218.6 6.6 169 10-196 23-224 (224)
180 PRK14239 phosphate transporter 99.9 2.1E-23 4.5E-28 217.1 11.3 179 8-204 4-237 (252)
181 PRK14270 phosphate ABC transpo 99.9 2.3E-23 5E-28 216.9 11.6 177 8-204 3-236 (251)
182 cd03251 ABCC_MsbA MsbA is an e 99.9 2.9E-23 6.3E-28 213.6 12.1 172 10-202 1-224 (234)
183 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 2.2E-23 4.8E-28 199.6 10.3 140 10-191 1-144 (144)
184 PRK14253 phosphate ABC transpo 99.9 1.8E-23 3.8E-28 217.4 10.4 176 8-202 2-232 (249)
185 PRK14248 phosphate ABC transpo 99.9 2.4E-23 5.2E-28 219.0 11.6 180 8-203 20-252 (268)
186 PRK14241 phosphate transporter 99.9 2.1E-23 4.6E-28 218.2 11.0 178 8-203 3-242 (258)
187 PRK14256 phosphate ABC transpo 99.9 2.3E-23 5E-28 217.0 11.2 177 8-203 3-236 (252)
188 COG1123 ATPase components of v 99.9 1.2E-23 2.6E-28 235.3 9.5 180 8-204 4-245 (539)
189 PRK14246 phosphate ABC transpo 99.9 3.1E-23 6.7E-28 217.1 11.8 177 8-203 9-241 (257)
190 PRK14245 phosphate ABC transpo 99.9 2.3E-23 5.1E-28 216.7 10.9 181 8-204 2-235 (250)
191 cd03228 ABCC_MRP_Like The MRP 99.9 3.6E-23 7.9E-28 203.4 11.5 160 10-191 1-171 (171)
192 cd03213 ABCG_EPDR ABCG transpo 99.9 5.3E-23 1.2E-27 206.4 12.8 166 9-195 3-193 (194)
193 PRK14259 phosphate ABC transpo 99.9 2.1E-23 4.5E-28 219.8 10.3 177 8-203 12-253 (269)
194 PRK10261 glutathione transport 99.9 2E-23 4.4E-28 243.9 11.2 179 8-203 312-553 (623)
195 PRK10261 glutathione transport 99.9 2E-23 4.4E-28 243.9 11.2 179 7-203 10-258 (623)
196 PRK14274 phosphate ABC transpo 99.9 2.8E-23 6E-28 217.4 11.0 177 8-203 11-243 (259)
197 PRK14240 phosphate transporter 99.9 3.2E-23 6.9E-28 215.6 11.3 174 9-202 3-233 (250)
198 cd03252 ABCC_Hemolysin The ABC 99.9 4.3E-23 9.4E-28 212.8 12.0 173 10-203 1-225 (237)
199 PRK13546 teichoic acids export 99.9 3.1E-23 6.7E-28 218.0 11.1 177 8-202 3-231 (264)
200 cd03223 ABCD_peroxisomal_ALDP 99.9 4.9E-23 1.1E-27 201.7 11.7 156 10-190 1-164 (166)
201 PRK14262 phosphate ABC transpo 99.9 3.2E-23 7E-28 215.6 11.0 176 8-202 2-233 (250)
202 PRK14237 phosphate transporter 99.9 4.7E-23 1E-27 216.8 12.2 180 5-203 16-251 (267)
203 PRK14251 phosphate ABC transpo 99.9 3.8E-23 8.2E-28 215.2 11.4 176 8-202 3-234 (251)
204 cd03254 ABCC_Glucan_exporter_l 99.9 4.6E-23 1E-27 211.4 11.9 172 9-201 2-224 (229)
205 PRK14269 phosphate ABC transpo 99.9 2.8E-23 6E-28 215.8 10.2 178 8-202 1-229 (246)
206 PRK14249 phosphate ABC transpo 99.9 4.4E-23 9.6E-28 214.8 11.7 177 8-204 3-236 (251)
207 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.9 4.9E-23 1.1E-27 212.6 11.7 171 10-201 1-224 (238)
208 PRK13543 cytochrome c biogenes 99.9 6.5E-23 1.4E-27 208.7 12.4 163 8-187 10-211 (214)
209 TIGR03269 met_CoM_red_A2 methy 99.9 3.3E-23 7.2E-28 237.5 11.2 177 8-201 278-515 (520)
210 PRK14272 phosphate ABC transpo 99.9 5E-23 1.1E-27 214.3 11.2 176 9-203 4-236 (252)
211 PRK13545 tagH teichoic acids e 99.9 3.8E-23 8.3E-28 232.1 10.8 177 8-202 20-231 (549)
212 PRK14235 phosphate transporter 99.9 5.6E-23 1.2E-27 216.3 11.0 175 8-202 18-250 (267)
213 cd03233 ABC_PDR_domain1 The pl 99.9 6.9E-23 1.5E-27 206.9 11.2 171 9-196 3-202 (202)
214 PRK14261 phosphate ABC transpo 99.9 6.4E-23 1.4E-27 213.9 11.3 176 8-202 5-236 (253)
215 PRK14238 phosphate transporter 99.9 5.7E-23 1.2E-27 216.7 10.9 177 8-203 23-255 (271)
216 CHL00131 ycf16 sulfate ABC tra 99.9 1.2E-22 2.6E-27 211.5 13.1 175 9-199 7-237 (252)
217 TIGR01184 ntrCD nitrate transp 99.9 4.6E-23 1E-27 212.2 9.8 161 24-201 1-202 (230)
218 COG3845 ABC-type uncharacteriz 99.9 6.7E-23 1.5E-27 224.0 11.4 173 8-198 3-224 (501)
219 COG1134 TagH ABC-type polysacc 99.9 3.9E-23 8.3E-28 209.3 8.5 162 23-202 42-235 (249)
220 cd03369 ABCC_NFT1 Domain 2 of 99.9 2E-22 4.2E-27 203.9 13.6 168 9-197 6-206 (207)
221 cd03253 ABCC_ATM1_transporter 99.9 1.1E-22 2.4E-27 209.6 11.9 171 10-201 1-222 (236)
222 PRK14243 phosphate transporter 99.9 7.7E-23 1.7E-27 214.8 10.9 177 8-203 9-248 (264)
223 PRK11288 araG L-arabinose tran 99.9 9E-23 2E-27 232.9 12.4 172 8-197 3-223 (501)
224 PRK15134 microcin C ABC transp 99.9 4.4E-23 9.6E-28 237.0 9.9 177 9-202 5-245 (529)
225 PRK14254 phosphate ABC transpo 99.9 9.6E-23 2.1E-27 216.6 11.4 176 8-202 38-268 (285)
226 PRK03695 vitamin B12-transport 99.9 3.9E-23 8.4E-28 215.2 8.2 180 11-212 2-231 (248)
227 cd03245 ABCC_bacteriocin_expor 99.9 1.9E-22 4E-27 205.7 13.1 165 10-195 3-219 (220)
228 cd03250 ABCC_MRP_domain1 Domai 99.9 1.3E-22 2.8E-27 204.7 11.7 162 10-191 1-204 (204)
229 PRK14236 phosphate transporter 99.9 1.1E-22 2.4E-27 214.6 11.6 178 7-203 23-256 (272)
230 PRK14255 phosphate ABC transpo 99.9 1.2E-22 2.6E-27 211.5 11.7 178 8-204 4-237 (252)
231 COG1119 ModF ABC-type molybden 99.9 1.5E-22 3.3E-27 204.8 11.9 173 8-197 30-256 (257)
232 PRK14265 phosphate ABC transpo 99.9 1E-22 2.2E-27 215.1 11.2 178 8-204 19-259 (274)
233 PRK09580 sufC cysteine desulfu 99.9 1.2E-22 2.5E-27 211.0 11.3 175 9-199 1-231 (248)
234 cd03222 ABC_RNaseL_inhibitor T 99.9 9.8E-23 2.1E-27 201.7 10.3 140 13-188 4-147 (177)
235 PRK13538 cytochrome c biogenes 99.9 1.3E-22 2.8E-27 204.9 11.4 158 9-183 1-199 (204)
236 PRK14266 phosphate ABC transpo 99.9 1.2E-22 2.5E-27 211.4 10.9 180 7-202 1-233 (250)
237 PRK14260 phosphate ABC transpo 99.9 1.4E-22 2.9E-27 212.3 11.1 178 7-203 5-243 (259)
238 TIGR03269 met_CoM_red_A2 methy 99.9 5.7E-23 1.2E-27 235.6 8.7 177 10-201 1-256 (520)
239 cd03231 ABC_CcmA_heme_exporter 99.9 1.9E-22 4.2E-27 203.3 11.3 160 10-186 1-198 (201)
240 cd03244 ABCC_MRP_domain2 Domai 99.9 3.8E-22 8.3E-27 203.5 13.4 167 10-197 3-220 (221)
241 PRK14244 phosphate ABC transpo 99.9 1.1E-22 2.5E-27 211.7 9.6 175 10-203 6-237 (251)
242 TIGR02633 xylG D-xylose ABC tr 99.9 1.7E-22 3.7E-27 230.6 11.8 174 9-200 1-227 (500)
243 PRK13549 xylose transporter AT 99.9 1.5E-22 3.2E-27 231.4 11.2 176 8-201 258-492 (506)
244 PRK13539 cytochrome c biogenes 99.9 2.7E-22 5.9E-27 203.1 11.8 153 9-178 2-192 (207)
245 TIGR02770 nickel_nikD nickel i 99.9 1.1E-22 2.4E-27 209.2 9.0 163 23-202 1-214 (230)
246 PRK14275 phosphate ABC transpo 99.9 1.7E-22 3.8E-27 214.7 10.8 177 8-203 38-270 (286)
247 PRK11819 putative ABC transpor 99.9 1.7E-22 3.7E-27 233.4 11.6 173 8-201 5-248 (556)
248 PRK14271 phosphate ABC transpo 99.9 1.8E-22 3.9E-27 213.5 10.8 176 8-203 20-251 (276)
249 COG4181 Predicted ABC-type tra 99.9 1.3E-22 2.8E-27 194.4 8.6 169 9-195 6-227 (228)
250 cd03234 ABCG_White The White s 99.9 2.9E-22 6.3E-27 205.4 11.9 170 9-196 3-226 (226)
251 PRK15134 microcin C ABC transp 99.9 1E-22 2.2E-27 234.0 9.4 178 8-203 274-515 (529)
252 PRK15064 ABC transporter ATP-b 99.9 2.4E-22 5.3E-27 230.9 12.5 172 9-201 1-240 (530)
253 PRK10982 galactose/methyl gala 99.9 1.6E-22 3.4E-27 230.4 10.7 171 13-201 2-221 (491)
254 TIGR02982 heterocyst_DevA ABC 99.9 2E-22 4.3E-27 205.9 10.1 165 10-192 2-219 (220)
255 PRK09700 D-allose transporter 99.9 2.3E-22 5E-27 230.1 11.8 174 8-200 264-495 (510)
256 COG4161 ArtP ABC-type arginine 99.9 2.8E-22 6.1E-27 190.2 10.2 177 9-204 2-230 (242)
257 PRK14257 phosphate ABC transpo 99.9 2.2E-22 4.7E-27 217.9 10.7 179 8-205 79-315 (329)
258 TIGR02324 CP_lyasePhnL phospho 99.9 2.6E-22 5.6E-27 205.3 10.3 161 9-186 1-222 (224)
259 cd03291 ABCC_CFTR1 The CFTR su 99.9 5.6E-22 1.2E-26 210.3 13.0 173 8-202 38-246 (282)
260 cd03289 ABCC_CFTR2 The CFTR su 99.9 4.3E-22 9.3E-27 210.4 11.5 172 10-203 3-225 (275)
261 COG4586 ABC-type uncharacteriz 99.9 9.2E-23 2E-27 208.2 5.9 177 8-202 2-245 (325)
262 cd03288 ABCC_SUR2 The SUR doma 99.9 9.5E-22 2.1E-26 205.8 13.6 175 7-202 17-242 (257)
263 PRK11147 ABC transporter ATPas 99.9 4.6E-22 1E-26 233.1 12.5 172 8-200 2-240 (635)
264 PRK14252 phosphate ABC transpo 99.9 4.4E-22 9.6E-27 209.1 10.8 176 8-202 15-248 (265)
265 TIGR02633 xylG D-xylose ABC tr 99.9 4.2E-22 9E-27 227.4 10.9 174 8-199 256-488 (500)
266 PRK14264 phosphate ABC transpo 99.9 6.1E-22 1.3E-26 212.4 11.2 176 8-202 44-288 (305)
267 PRK15064 ABC transporter ATP-b 99.9 4.2E-22 9.1E-27 229.0 10.6 172 9-201 319-523 (530)
268 PRK14263 phosphate ABC transpo 99.9 7.5E-22 1.6E-26 207.1 11.4 179 7-203 6-245 (261)
269 PRK13540 cytochrome c biogenes 99.9 8.2E-22 1.8E-26 198.5 11.1 157 9-183 1-196 (200)
270 cd03248 ABCC_TAP TAP, the Tran 99.9 1.1E-21 2.3E-26 201.0 12.1 166 7-192 9-226 (226)
271 TIGR03608 L_ocin_972_ABC putat 99.9 4.3E-22 9.4E-27 200.8 9.0 156 12-185 1-205 (206)
272 PRK15439 autoinducer 2 ABC tra 99.9 5.1E-22 1.1E-26 227.2 10.7 172 9-202 268-491 (510)
273 TIGR01257 rim_protein retinal- 99.9 4.6E-22 1E-26 251.3 11.2 176 8-201 1936-2157(2272)
274 COG2274 SunT ABC-type bacterio 99.9 3.9E-22 8.6E-27 233.2 9.6 176 9-204 471-697 (709)
275 PRK10636 putative ABC transpor 99.9 8.6E-22 1.9E-26 230.7 11.7 170 8-198 311-512 (638)
276 TIGR03719 ABC_ABC_ChvD ATP-bin 99.9 9.8E-22 2.1E-26 226.9 11.4 173 8-201 3-246 (552)
277 COG4987 CydC ABC-type transpor 99.9 1.3E-21 2.8E-26 215.4 11.7 175 9-203 336-561 (573)
278 TIGR01189 ccmA heme ABC export 99.9 1.6E-21 3.5E-26 196.0 11.4 151 10-177 1-191 (198)
279 COG4988 CydD ABC-type transpor 99.9 1.2E-21 2.5E-26 218.8 11.3 176 10-205 321-545 (559)
280 PRK13409 putative ATPase RIL; 99.9 9.4E-22 2E-26 227.9 10.3 172 8-197 339-536 (590)
281 PRK10636 putative ABC transpor 99.9 1.8E-21 4E-26 228.0 12.7 170 9-199 1-232 (638)
282 PRK15177 Vi polysaccharide exp 99.9 7.2E-22 1.6E-26 201.2 8.0 159 23-200 2-189 (213)
283 cd03237 ABC_RNaseL_inhibitor_d 99.9 1.3E-21 2.8E-26 203.7 9.5 155 23-188 9-191 (246)
284 PRK10762 D-ribose transporter 99.8 2.3E-21 4.9E-26 221.4 12.1 172 8-201 256-482 (501)
285 PRK10982 galactose/methyl gala 99.8 2E-21 4.4E-26 221.3 11.5 173 8-199 249-476 (491)
286 TIGR01257 rim_protein retinal- 99.8 1.4E-21 3E-26 247.0 11.1 175 8-201 927-1147(2272)
287 PRK13541 cytochrome c biogenes 99.8 4E-21 8.7E-26 192.7 12.2 153 9-178 1-188 (195)
288 PRK11288 araG L-arabinose tran 99.8 1.5E-21 3.3E-26 222.8 10.1 172 9-201 257-483 (501)
289 TIGR03771 anch_rpt_ABC anchore 99.8 2.2E-21 4.8E-26 198.8 10.1 163 30-211 2-209 (223)
290 PRK10938 putative molybdenum t 99.8 3E-21 6.4E-26 219.9 12.1 172 8-196 259-485 (490)
291 cd00267 ABC_ATPase ABC (ATP-bi 99.8 2.4E-21 5.3E-26 187.5 9.0 149 12-191 2-157 (157)
292 COG4167 SapF ABC-type antimicr 99.8 1.9E-21 4.1E-26 187.9 8.2 181 7-204 2-240 (267)
293 COG4148 ModC ABC-type molybdat 99.8 1.7E-21 3.7E-26 199.3 8.2 156 42-208 26-223 (352)
294 PRK11176 lipid transporter ATP 99.8 3.7E-21 8E-26 223.4 11.5 175 9-204 341-568 (582)
295 COG4172 ABC-type uncharacteriz 99.8 3.3E-21 7.1E-26 205.3 9.8 180 8-205 275-518 (534)
296 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 6.7E-21 1.5E-25 225.4 12.6 172 9-203 451-673 (686)
297 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 6.1E-21 1.3E-25 226.6 12.1 172 9-203 477-700 (710)
298 PRK10790 putative multidrug tr 99.8 9.8E-21 2.1E-25 220.4 13.6 174 9-203 340-563 (592)
299 COG1101 PhnK ABC-type uncharac 99.8 4E-21 8.7E-26 190.4 8.2 175 9-201 1-236 (263)
300 cd03290 ABCC_SUR1_N The SUR do 99.8 1E-20 2.2E-25 192.9 11.4 162 10-190 1-217 (218)
301 KOG0055 Multidrug/pheromone ex 99.8 4.6E-21 9.9E-26 228.6 9.6 176 9-204 350-577 (1228)
302 COG4172 ABC-type uncharacteriz 99.8 2.3E-21 5E-26 206.5 6.0 180 7-204 4-248 (534)
303 PRK11174 cysteine/glutathione 99.8 1.2E-20 2.6E-25 219.4 12.6 173 9-203 349-572 (588)
304 PRK10535 macrolide transporter 99.8 1.8E-20 3.9E-25 220.0 14.2 176 8-202 3-231 (648)
305 TIGR03375 type_I_sec_LssB type 99.8 1.1E-20 2.4E-25 223.9 12.3 173 9-202 463-687 (694)
306 cd03238 ABC_UvrA The excision 99.8 7.2E-21 1.6E-25 188.3 9.0 148 22-192 9-166 (176)
307 TIGR01187 potA spermidine/putr 99.8 3.2E-21 6.9E-26 208.6 6.9 149 45-204 1-191 (325)
308 TIGR03719 ABC_ABC_ChvD ATP-bin 99.8 8.3E-21 1.8E-25 219.3 10.8 166 8-193 321-520 (552)
309 PRK11819 putative ABC transpor 99.8 7.4E-21 1.6E-25 219.8 10.4 166 8-193 323-522 (556)
310 PRK11160 cysteine/glutathione 99.8 1.4E-20 2.9E-25 218.5 11.5 176 9-204 338-563 (574)
311 PLN03073 ABC transporter F fam 99.8 1.8E-20 3.8E-25 221.2 12.2 170 8-198 507-709 (718)
312 TIGR01842 type_I_sec_PrtD type 99.8 2.5E-20 5.4E-25 215.0 13.2 174 9-201 316-540 (544)
313 COG1132 MdlB ABC-type multidru 99.8 1.5E-20 3.2E-25 217.8 11.3 175 9-204 328-553 (567)
314 PRK11147 ABC transporter ATPas 99.8 1.6E-20 3.4E-25 220.3 11.4 167 8-194 318-518 (635)
315 TIGR01193 bacteriocin_ABC ABC- 99.8 2.3E-20 4.9E-25 221.7 12.9 173 9-203 473-697 (708)
316 COG4107 PhnK ABC-type phosphon 99.8 2.1E-20 4.5E-25 179.5 9.7 180 8-204 5-242 (258)
317 PRK13657 cyclic beta-1,2-gluca 99.8 2.6E-20 5.7E-25 216.7 12.7 174 9-202 334-557 (588)
318 cd03236 ABC_RNaseL_inhibitor_d 99.8 7.2E-21 1.5E-25 199.1 7.2 162 14-195 5-219 (255)
319 TIGR01192 chvA glucan exporter 99.8 2.9E-20 6.2E-25 216.2 13.0 175 9-203 334-558 (585)
320 TIGR00958 3a01208 Conjugate Tr 99.8 2.1E-20 4.6E-25 221.9 12.1 173 9-204 478-703 (711)
321 TIGR02203 MsbA_lipidA lipid A 99.8 2.7E-20 5.8E-25 215.6 12.5 175 9-203 330-556 (571)
322 COG0488 Uup ATPase components 99.8 2.6E-20 5.7E-25 211.6 12.0 167 7-194 1-230 (530)
323 TIGR02204 MsbA_rel ABC transpo 99.8 3.2E-20 7E-25 215.2 12.8 174 9-202 337-562 (576)
324 PRK10789 putative multidrug tr 99.8 3.4E-20 7.3E-25 214.9 12.8 175 9-203 313-538 (569)
325 TIGR01166 cbiO cobalt transpor 99.8 1.8E-20 3.8E-25 187.1 8.9 138 22-176 6-190 (190)
326 KOG0057 Mitochondrial Fe/S clu 99.8 1.8E-20 4E-25 206.6 9.8 174 9-203 351-574 (591)
327 COG4674 Uncharacterized ABC-ty 99.8 6E-21 1.3E-25 186.5 5.1 184 8-210 4-242 (249)
328 PLN03211 ABC transporter G-25; 99.8 1.8E-20 4E-25 219.7 9.9 172 12-201 71-294 (659)
329 KOG0058 Peptide exporter, ABC 99.8 1.7E-20 3.7E-25 213.2 9.1 176 9-204 465-692 (716)
330 TIGR01846 type_I_sec_HlyB type 99.8 4.7E-20 1E-24 218.5 12.9 174 9-203 455-680 (694)
331 COG0396 sufC Cysteine desulfur 99.8 6.7E-20 1.5E-24 183.8 10.1 176 7-198 1-229 (251)
332 PRK10522 multidrug transporter 99.8 8.2E-20 1.8E-24 210.8 11.2 168 9-195 322-530 (547)
333 TIGR01194 cyc_pep_trnsptr cycl 99.8 1.5E-19 3.2E-24 209.0 12.2 167 9-195 337-551 (555)
334 PLN03232 ABC transporter C fam 99.8 1.2E-19 2.6E-24 229.7 12.3 175 9-204 1234-1459(1495)
335 PLN03130 ABC transporter C fam 99.8 1.3E-19 2.7E-24 230.1 11.5 175 9-204 1237-1462(1622)
336 PLN03073 ABC transporter F fam 99.8 2.1E-19 4.5E-24 212.2 12.3 175 6-198 174-426 (718)
337 COG4619 ABC-type uncharacteriz 99.8 6.2E-20 1.3E-24 175.5 5.5 167 9-192 3-212 (223)
338 PTZ00265 multidrug resistance 99.8 1.8E-19 3.9E-24 226.8 10.3 163 9-188 382-654 (1466)
339 PRK13409 putative ATPase RIL; 99.8 2.3E-19 4.9E-24 208.1 9.5 161 9-188 65-286 (590)
340 TIGR00957 MRP_assoc_pro multi 99.8 3.4E-19 7.4E-24 226.0 11.7 176 9-204 1284-1509(1522)
341 TIGR02868 CydC thiol reductant 99.8 6.4E-19 1.4E-23 202.5 12.4 147 9-173 334-529 (529)
342 PTZ00243 ABC transporter; Prov 99.8 3.9E-19 8.5E-24 225.3 11.5 174 9-203 1308-1533(1560)
343 TIGR00956 3a01205 Pleiotropic 99.8 1.2E-18 2.6E-23 218.9 14.7 204 9-232 759-1020(1394)
344 cd03270 ABC_UvrA_I The excisio 99.8 9.2E-19 2E-23 180.0 10.3 79 109-196 137-226 (226)
345 TIGR00957 MRP_assoc_pro multi 99.8 9.8E-19 2.1E-23 221.8 12.5 177 9-203 636-850 (1522)
346 TIGR02857 CydD thiol reductant 99.8 1.1E-18 2.3E-23 200.7 11.4 159 9-186 320-529 (529)
347 PTZ00265 multidrug resistance 99.8 7.4E-19 1.6E-23 221.2 10.9 178 9-203 1165-1452(1466)
348 COG4138 BtuD ABC-type cobalami 99.8 2E-19 4.3E-24 173.0 3.5 188 8-217 2-235 (248)
349 TIGR00954 3a01203 Peroxysomal 99.8 2.3E-18 5E-23 202.6 12.2 162 9-191 451-656 (659)
350 PLN03232 ABC transporter C fam 99.8 2.3E-18 4.9E-23 218.3 12.9 176 9-203 614-828 (1495)
351 TIGR00955 3a01204 The Eye Pigm 99.8 2.3E-18 5E-23 201.4 11.2 162 22-201 39-254 (617)
352 PLN03140 ABC transporter G fam 99.8 3.5E-18 7.5E-23 214.6 13.4 186 9-213 867-1118(1470)
353 COG4618 ArpD ABC-type protease 99.7 1.9E-18 4.1E-23 189.2 9.4 176 9-203 334-560 (580)
354 PLN03130 ABC transporter C fam 99.7 2.6E-18 5.7E-23 218.2 12.1 175 9-203 614-828 (1622)
355 TIGR01271 CFTR_protein cystic 99.7 2.2E-18 4.7E-23 218.2 9.9 173 9-203 1217-1440(1490)
356 COG0488 Uup ATPase components 99.7 4.5E-18 9.7E-23 193.5 10.0 169 8-197 320-519 (530)
357 TIGR01271 CFTR_protein cystic 99.7 4E-18 8.7E-23 215.8 10.7 161 23-203 441-636 (1490)
358 KOG0056 Heavy metal exporter H 99.7 4.5E-18 9.7E-23 184.3 8.8 175 9-203 537-761 (790)
359 COG4133 CcmA ABC-type transpor 99.7 8.2E-18 1.8E-22 164.1 8.7 150 9-175 2-192 (209)
360 KOG0055 Multidrug/pheromone ex 99.7 9.6E-18 2.1E-22 200.5 10.5 175 9-203 987-1213(1228)
361 KOG0059 Lipid exporter ABCA1 a 99.7 1.1E-17 2.5E-22 202.2 9.0 175 8-201 563-785 (885)
362 PLN03140 ABC transporter G fam 99.7 4.2E-18 9.1E-23 213.8 4.6 168 16-201 173-425 (1470)
363 PTZ00243 ABC transporter; Prov 99.7 1.8E-17 3.9E-22 210.3 9.7 163 23-204 675-871 (1560)
364 TIGR00956 3a01205 Pleiotropic 99.7 1.7E-17 3.7E-22 208.7 8.6 166 23-201 76-298 (1394)
365 COG4778 PhnL ABC-type phosphon 99.7 2.4E-17 5.2E-22 158.1 5.9 162 8-186 3-225 (235)
366 KOG0054 Multidrug resistance-a 99.7 1.3E-16 2.8E-21 194.8 13.7 176 9-204 1138-1363(1381)
367 cd03279 ABC_sbcCD SbcCD and ot 99.7 5.9E-17 1.3E-21 165.0 8.0 159 9-188 5-208 (213)
368 COG4615 PvdE ABC-type sideroph 99.7 1.3E-16 2.8E-21 170.0 8.9 170 8-195 321-529 (546)
369 KOG0061 Transporter, ABC super 99.7 1.7E-16 3.6E-21 184.8 10.0 174 10-201 26-258 (613)
370 COG5265 ATM1 ABC-type transpor 99.6 2E-16 4.3E-21 170.1 8.6 176 9-204 262-487 (497)
371 KOG0927 Predicted transporter 99.6 2.4E-16 5.2E-21 173.7 6.9 170 7-197 387-590 (614)
372 cd03278 ABC_SMC_barmotin Barmo 99.6 3.4E-16 7.4E-21 157.8 7.1 143 25-188 14-190 (197)
373 COG4136 ABC-type uncharacteriz 99.6 9.8E-16 2.1E-20 144.4 9.3 150 9-177 2-199 (213)
374 cd03271 ABC_UvrA_II The excisi 99.6 1.2E-15 2.7E-20 159.9 10.0 81 109-198 169-261 (261)
375 KOG2355 Predicted ABC-type tra 99.6 2.8E-15 6E-20 147.9 9.4 171 9-198 13-232 (291)
376 KOG0054 Multidrug resistance-a 99.6 3E-15 6.4E-20 183.1 11.8 177 8-203 517-731 (1381)
377 cd03272 ABC_SMC3_euk Eukaryoti 99.6 2.3E-15 5E-20 155.8 8.1 71 109-188 158-235 (243)
378 cd03274 ABC_SMC4_euk Eukaryoti 99.5 6.6E-15 1.4E-19 150.1 7.2 71 109-188 127-204 (212)
379 cd03240 ABC_Rad50 The catalyti 99.5 6.2E-15 1.3E-19 149.4 6.3 139 42-191 24-200 (204)
380 COG1245 Predicted ATPase, RNas 99.5 1.1E-14 2.5E-19 157.7 8.7 153 24-188 352-531 (591)
381 KOG0927 Predicted transporter 99.5 1.5E-14 3.2E-19 159.7 8.6 173 9-201 75-307 (614)
382 cd03280 ABC_MutS2 MutS2 homolo 99.5 1.9E-14 4.1E-19 145.2 7.9 142 24-195 17-171 (200)
383 COG4170 SapD ABC-type antimicr 99.5 9.5E-15 2.1E-19 144.4 5.2 181 8-202 2-247 (330)
384 KOG0066 eIF2-interacting prote 99.5 4E-14 8.7E-19 152.0 8.1 162 7-188 584-776 (807)
385 cd03276 ABC_SMC6_euk Eukaryoti 99.5 6.9E-14 1.5E-18 141.1 8.9 73 109-188 109-190 (198)
386 cd03243 ABC_MutS_homologs The 99.4 8.9E-14 1.9E-18 140.5 6.7 149 26-198 21-174 (202)
387 COG1129 MglA ABC-type sugar tr 99.4 2.2E-13 4.7E-18 152.4 10.3 172 8-200 262-487 (500)
388 cd03275 ABC_SMC1_euk Eukaryoti 99.4 1.2E-13 2.5E-18 144.1 7.3 74 110-191 156-236 (247)
389 cd03273 ABC_SMC2_euk Eukaryoti 99.4 1.6E-13 3.4E-18 143.3 7.9 69 110-187 167-242 (251)
390 PF00005 ABC_tran: ABC transpo 99.4 2.2E-14 4.7E-19 135.0 1.2 101 24-135 1-137 (137)
391 PRK00635 excinuclease ABC subu 99.4 1.8E-13 3.9E-18 171.7 9.5 84 111-202 811-905 (1809)
392 TIGR00630 uvra excinuclease AB 99.4 4.8E-13 1E-17 161.0 12.0 82 111-200 830-922 (924)
393 KOG0065 Pleiotropic drug resis 99.4 6.8E-14 1.5E-18 167.9 4.0 173 23-212 806-1028(1391)
394 KOG0062 ATPase component of AB 99.4 2E-13 4.2E-18 150.3 5.1 167 9-192 80-273 (582)
395 PRK00349 uvrA excinuclease ABC 99.4 5.8E-13 1.3E-17 160.6 9.5 85 111-203 832-927 (943)
396 cd03227 ABC_Class2 ABC-type Cl 99.4 3.7E-13 8E-18 131.4 5.5 127 41-188 22-155 (162)
397 COG4178 ABC-type uncharacteriz 99.4 2.4E-12 5.2E-17 146.7 12.0 152 8-178 391-579 (604)
398 cd03239 ABC_SMC_head The struc 99.4 1E-12 2.2E-17 130.5 7.8 135 42-188 24-172 (178)
399 cd01851 GBP Guanylate-binding 99.3 2.3E-12 5E-17 132.5 8.2 197 37-241 4-223 (224)
400 cd03277 ABC_SMC5_euk Eukaryoti 99.3 2E-12 4.3E-17 132.0 7.3 75 110-191 127-211 (213)
401 cd03283 ABC_MutS-like MutS-lik 99.3 2.5E-12 5.3E-17 130.0 7.0 132 23-178 16-153 (199)
402 cd03285 ABC_MSH2_euk MutS2 hom 99.3 3.2E-12 7E-17 131.3 5.2 149 23-197 19-175 (222)
403 COG1245 Predicted ATPase, RNas 99.3 2.9E-12 6.3E-17 139.2 4.4 138 39-187 99-287 (591)
404 KOG0062 ATPase component of AB 99.2 1.3E-11 2.8E-16 136.1 6.4 167 7-194 360-559 (582)
405 cd03282 ABC_MSH4_euk MutS4 hom 99.2 1.4E-11 3E-16 125.0 6.1 135 23-180 18-158 (204)
406 cd03284 ABC_MutS1 MutS1 homolo 99.2 2.6E-11 5.7E-16 124.0 7.5 150 23-199 20-177 (216)
407 COG2401 ABC-type ATPase fused 99.2 3.4E-11 7.4E-16 129.6 7.4 157 23-192 398-587 (593)
408 smart00534 MUTSac ATPase domai 99.1 5.4E-11 1.2E-15 118.7 6.4 124 42-182 1-130 (185)
409 cd03281 ABC_MSH5_euk MutS5 hom 99.1 1E-10 2.2E-15 119.5 7.2 126 41-179 30-160 (213)
410 COG0178 UvrA Excinuclease ATPa 99.1 5.3E-10 1.2E-14 129.1 10.8 82 114-203 827-919 (935)
411 cd03287 ABC_MSH3_euk MutS3 hom 99.0 3.5E-10 7.5E-15 116.2 7.3 133 23-177 20-158 (222)
412 COG3845 ABC-type uncharacteriz 99.0 7.1E-10 1.5E-14 122.5 8.2 175 8-200 256-489 (501)
413 TIGR02858 spore_III_AA stage I 99.0 8.6E-10 1.9E-14 116.4 7.0 136 41-201 112-267 (270)
414 PRK00635 excinuclease ABC subu 99.0 1.4E-09 3.1E-14 137.2 10.0 83 114-204 1704-1797(1809)
415 KOG0066 eIF2-interacting prote 99.0 2.3E-10 4.9E-15 123.6 2.5 166 9-192 264-487 (807)
416 cd03241 ABC_RecN RecN ATPase i 99.0 1.1E-09 2.3E-14 116.3 7.2 69 111-188 172-247 (276)
417 KOG0060 Long-chain acyl-CoA tr 98.9 1E-08 2.2E-13 114.9 12.3 150 8-177 432-631 (659)
418 TIGR01069 mutS2 MutS2 family p 98.9 1.6E-09 3.5E-14 129.4 6.0 120 41-176 323-448 (771)
419 KOG0063 RNAse L inhibitor, ABC 98.9 1.6E-09 3.4E-14 117.3 4.4 154 24-188 352-532 (592)
420 PRK07721 fliI flagellum-specif 98.8 1.5E-08 3.3E-13 113.7 10.5 158 22-199 147-339 (438)
421 cd03286 ABC_MSH6_euk MutS6 hom 98.8 5.5E-09 1.2E-13 107.1 6.3 136 23-180 19-160 (218)
422 KOG0064 Peroxisomal long-chain 98.8 2.2E-08 4.7E-13 111.0 10.4 149 9-177 481-673 (728)
423 cd03242 ABC_RecF RecF is a rec 98.8 7.4E-09 1.6E-13 109.5 6.3 67 114-192 188-269 (270)
424 PRK00409 recombination and DNA 98.7 8.2E-09 1.8E-13 123.6 5.4 130 39-183 326-460 (782)
425 PRK00349 uvrA excinuclease ABC 98.7 1.2E-08 2.7E-13 123.6 5.4 87 108-203 488-585 (943)
426 KOG0065 Pleiotropic drug resis 98.7 1.4E-08 2.9E-13 123.2 5.4 166 22-202 129-350 (1391)
427 TIGR00630 uvra excinuclease AB 98.7 1.8E-08 3.8E-13 122.1 5.1 86 108-202 486-582 (924)
428 COG3910 Predicted ATPase [Gene 98.6 2.1E-07 4.5E-12 91.7 8.6 51 118-175 138-190 (233)
429 PF02463 SMC_N: RecF/RecN/SMC 98.5 1.5E-07 3.3E-12 95.9 6.4 63 111-182 138-207 (220)
430 PTZ00132 GTP-binding nuclear p 98.4 4.8E-07 1E-11 92.0 8.0 41 114-160 157-205 (215)
431 PRK13695 putative NTPase; Prov 98.4 4.2E-07 9.1E-12 89.6 6.4 72 111-195 80-156 (174)
432 TIGR02788 VirB11 P-type DNA tr 98.4 4.1E-07 8.9E-12 98.1 5.6 143 42-215 146-292 (308)
433 PRK00064 recF recombination pr 98.3 1.4E-06 3E-11 96.1 9.4 68 114-192 278-359 (361)
434 PRK08533 flagellar accessory p 98.3 1.1E-06 2.4E-11 90.9 6.6 42 126-175 119-164 (230)
435 KOG0063 RNAse L inhibitor, ABC 98.2 1.5E-06 3.1E-11 94.8 6.5 138 38-187 98-287 (592)
436 PF13304 AAA_21: AAA domain; P 98.2 8.3E-07 1.8E-11 89.3 3.8 57 112-175 239-301 (303)
437 cd00820 PEPCK_HprK Phosphoenol 98.1 1.5E-06 3.3E-11 79.1 3.2 34 22-61 3-36 (107)
438 TIGR03238 dnd_assoc_3 dnd syst 98.1 2.3E-06 5E-11 95.9 3.4 39 23-73 21-59 (504)
439 TIGR01026 fliI_yscN ATPase Fli 98.0 1.4E-05 3E-10 90.0 9.3 156 22-198 152-343 (440)
440 PRK06793 fliI flagellum-specif 98.0 7E-06 1.5E-10 91.9 6.4 158 9-197 130-305 (432)
441 cd01120 RecA-like_NTPases RecA 98.0 7.3E-06 1.6E-10 78.0 5.7 23 42-64 1-23 (165)
442 cd01124 KaiC KaiC is a circadi 98.0 4.5E-06 9.8E-11 82.4 4.1 58 126-187 97-163 (187)
443 PRK05399 DNA mismatch repair p 98.0 1.1E-05 2.4E-10 98.0 7.1 124 39-177 606-734 (854)
444 TIGR00634 recN DNA repair prot 97.9 7.6E-06 1.7E-10 95.4 4.4 72 108-188 439-517 (563)
445 PRK06067 flagellar accessory p 97.9 2.1E-05 4.5E-10 81.3 6.5 73 115-192 106-183 (234)
446 cd01128 rho_factor Transcripti 97.8 9.8E-06 2.1E-10 84.9 3.4 67 114-192 142-211 (249)
447 TIGR00618 sbcc exonuclease Sbc 97.8 1.6E-05 3.4E-10 99.2 5.6 75 107-188 948-1035(1042)
448 smart00382 AAA ATPases associa 97.8 8.8E-05 1.9E-09 67.6 9.1 25 40-64 2-26 (148)
449 PF00488 MutS_V: MutS domain V 97.8 3.5E-05 7.6E-10 80.1 6.9 123 40-177 43-170 (235)
450 cd01131 PilT Pilus retraction 97.7 4.8E-05 1E-09 76.9 6.4 23 42-64 3-25 (198)
451 PRK10869 recombination and rep 97.7 2.9E-05 6.2E-10 90.3 4.9 72 108-188 429-507 (553)
452 cd01130 VirB11-like_ATPase Typ 97.7 2.9E-05 6.2E-10 77.6 3.5 40 25-74 16-55 (186)
453 PRK13830 conjugal transfer pro 97.6 0.00016 3.4E-09 88.0 9.4 61 126-194 654-724 (818)
454 PRK10246 exonuclease subunit S 97.6 4.5E-05 9.9E-10 95.0 4.8 87 95-188 935-1032(1047)
455 PHA02562 46 endonuclease subun 97.6 5.2E-05 1.1E-09 88.2 4.9 74 109-192 468-555 (562)
456 PF13555 AAA_29: P-loop contai 97.5 6.9E-05 1.5E-09 61.5 3.3 23 42-64 25-47 (62)
457 PRK06002 fliI flagellum-specif 97.5 0.00011 2.5E-09 82.5 5.6 56 8-74 138-195 (450)
458 COG1159 Era GTPase [General fu 97.5 0.00021 4.6E-09 75.5 7.2 123 38-176 4-127 (298)
459 PRK10078 ribose 1,5-bisphospho 97.4 9.7E-05 2.1E-09 73.7 3.6 25 40-64 2-26 (186)
460 TIGR00235 udk uridine kinase. 97.4 8.1E-05 1.8E-09 75.5 3.0 27 38-64 4-30 (207)
461 cd01852 AIG1 AIG1 (avrRpt2-ind 97.4 0.00027 5.9E-09 70.9 6.5 23 42-64 2-24 (196)
462 PRK09825 idnK D-gluconate kina 97.4 0.00011 2.3E-09 73.1 3.4 26 39-64 2-27 (176)
463 TIGR01070 mutS1 DNA mismatch r 97.4 0.00021 4.5E-09 86.9 6.0 123 40-177 592-719 (840)
464 PRK00454 engB GTP-binding prot 97.4 0.00066 1.4E-08 67.3 8.5 23 42-64 26-48 (196)
465 cd01125 repA Hexameric Replica 97.3 0.00012 2.5E-09 76.1 2.9 48 126-174 113-160 (239)
466 PRK09270 nucleoside triphospha 97.3 0.00013 2.9E-09 75.2 3.4 32 39-74 32-63 (229)
467 PF04548 AIG1: AIG1 family; I 97.3 0.00028 6.1E-09 72.0 5.5 117 42-172 2-126 (212)
468 PRK00300 gmk guanylate kinase; 97.3 0.00019 4.1E-09 72.3 3.9 26 39-64 4-29 (205)
469 PRK03918 chromosome segregatio 97.3 0.00017 3.7E-09 88.5 4.3 73 108-188 787-868 (880)
470 PRK00098 GTPase RsgA; Reviewed 97.3 0.00032 6.8E-09 75.5 5.5 33 39-75 163-195 (298)
471 TIGR00606 rad50 rad50. This fa 97.3 0.00016 3.5E-09 92.2 3.6 67 109-181 1199-1278(1311)
472 TIGR01420 pilT_fam pilus retra 97.3 0.00035 7.5E-09 76.7 5.7 26 39-64 121-146 (343)
473 PRK01156 chromosome segregatio 97.3 0.00022 4.9E-09 87.7 4.6 73 109-188 801-884 (895)
474 TIGR00554 panK_bact pantothena 97.2 0.00019 4.2E-09 76.8 3.3 24 41-64 63-86 (290)
475 cd04155 Arl3 Arl3 subfamily. 97.2 0.00025 5.3E-09 68.8 3.8 32 42-73 16-47 (173)
476 PRK10416 signal recognition pa 97.2 0.00049 1.1E-08 74.7 6.4 26 39-64 113-138 (318)
477 cd00009 AAA The AAA+ (ATPases 97.2 0.00076 1.6E-08 62.2 6.2 25 40-64 19-43 (151)
478 TIGR03263 guanyl_kin guanylate 97.2 0.00029 6.3E-09 69.4 3.4 25 40-64 1-25 (180)
479 PF01926 MMR_HSR1: 50S ribosom 97.1 0.0004 8.6E-09 63.4 3.8 22 43-64 2-23 (116)
480 cd01854 YjeQ_engC YjeQ/EngC. 97.1 0.00048 1E-08 73.7 5.0 31 41-75 162-192 (287)
481 cd01878 HflX HflX subfamily. 97.1 0.001 2.3E-08 66.7 7.1 24 41-64 42-65 (204)
482 cd01876 YihA_EngB The YihA (En 97.1 0.00041 8.8E-09 65.9 3.9 20 43-62 2-21 (170)
483 smart00053 DYNc Dynamin, GTPas 97.1 0.0024 5.2E-08 66.6 9.8 24 41-64 27-50 (240)
484 PRK00089 era GTPase Era; Revie 97.1 0.00099 2.1E-08 71.1 7.2 63 39-104 4-66 (292)
485 PRK07196 fliI flagellum-specif 97.1 0.00033 7.1E-09 78.7 3.4 36 22-64 144-179 (434)
486 TIGR02322 phosphon_PhnN phosph 97.1 0.00034 7.3E-09 69.0 3.1 24 41-64 2-25 (179)
487 cd02025 PanK Pantothenate kina 97.1 0.00025 5.5E-09 72.9 2.2 23 42-64 1-23 (220)
488 cd02023 UMPK Uridine monophosp 97.0 0.00031 6.8E-09 70.5 2.5 23 42-64 1-23 (198)
489 PRK07594 type III secretion sy 97.0 0.00044 9.6E-09 77.7 3.8 54 9-73 129-184 (433)
490 PF02263 GBP: Guanylate-bindin 97.0 0.0014 3E-08 69.2 6.8 132 38-175 19-164 (260)
491 PF09818 ABC_ATPase: Predicted 97.0 0.0022 4.8E-08 71.3 8.5 145 42-188 246-413 (448)
492 PRK13898 type IV secretion sys 97.0 0.0016 3.5E-08 79.3 8.2 46 126-178 644-690 (800)
493 TIGR03881 KaiC_arch_4 KaiC dom 97.0 0.0016 3.4E-08 66.9 6.8 24 38-61 18-41 (229)
494 cd01136 ATPase_flagellum-secre 97.0 0.00056 1.2E-08 74.3 3.5 41 22-73 58-98 (326)
495 cd02026 PRK Phosphoribulokinas 97.0 0.00057 1.2E-08 72.6 3.6 23 42-64 1-23 (273)
496 cd04104 p47_IIGP_like p47 (47- 96.9 0.00075 1.6E-08 68.0 3.7 29 42-74 3-31 (197)
497 PF13476 AAA_23: AAA domain; P 96.9 0.00061 1.3E-08 67.4 3.0 34 25-65 11-44 (202)
498 PRK13764 ATPase; Provisional 96.9 0.0013 2.8E-08 76.8 6.0 122 42-197 259-399 (602)
499 TIGR00436 era GTP-binding prot 96.9 0.001 2.3E-08 70.3 4.8 56 42-104 2-61 (270)
500 COG4637 Predicted ATPase [Gene 96.9 0.0013 2.9E-08 69.9 5.4 57 115-179 276-337 (373)
No 1
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=100.00 E-value=9.3e-158 Score=1265.34 Aligned_cols=689 Identities=63% Similarity=1.002 Sum_probs=659.7
Q ss_pred ccEEEEeeeeeeccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeecccc
Q 005138 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCA 87 (712)
Q Consensus 8 ~~I~l~~l~k~y~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~~ 87 (712)
+..|++|.+|.|+..+|+.+...++..+||.+|+||+|+|||+||||||||+|||+.|++|+...||.|+|+|||+++..
T Consensus 5 ~stQlIDe~keFn~s~l~~F~q~vgl~d~Gl~YhVVavmG~QSSGKSTLLN~LFgTnF~~MDA~~gRqQTTKGIWlar~~ 84 (772)
T KOG2203|consen 5 CSTQLIDEEKEFNVSGLDYFQQCVGLRDCGLSYHVVAVMGSQSSGKSTLLNHLFGTNFREMDAFKGRQQTTKGIWLARCA 84 (772)
T ss_pred ccceeeccccccchhhHHHHHHHhcccccCcceeEEEEecCcccchHHHHHHHhccChHHHHhhhccccccchhhHHhhc
Confidence 57999999999987789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccchhccccCCCcccccchhhHHHHHHHHHHHHHHHHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCC--ce
Q 005138 88 GIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRK--TT 165 (712)
Q Consensus 88 ~~~~~~~v~d~~g~~~~~r~~~~~~ferQrv~~A~Ala~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g--~t 165 (712)
+.+++++|||++|+++++|+++ +.||||.++||.|+++|+|+|+|++++|.++++|++++++||+++++||.+++ ++
T Consensus 85 ~i~p~i~vmDvEGTDGrERGED-qdFErksALFaiavSevvivNMW~~qIG~~Q~aN~~LLKTVfeV~lrLF~~rk~k~~ 163 (772)
T KOG2203|consen 85 GIEPCILVMDVEGTDGRERGED-QDFERKSALFAIAVSEVVIVNMWEHQIGLYQGANMALLKTVFEVNLRLFSPRKNKTL 163 (772)
T ss_pred CCCCceEEEecccCCccccccc-ccHHHHhHHHHHhhhheehhhHHHHHhhHhhccCcHHHHHHHHHHHHHhCCCCCceE
Confidence 9999999999999999999998 99999999999999999999999999999999999999999999999998766 99
Q ss_pred EEEEecCC-CCcccccccccceecCCeEEEecCcccccCCccchhhhcccccccccchhhHHHHHHHHHHhhhhhccc-c
Q 005138 166 LMFVIRDK-TRTPLENLEPVLREDIQKIWDSVPKPQAHMETPLSEFFNVEVVALSSFEEKEELFKEQVASLRQRFYHS-V 243 (712)
Q Consensus 166 iL~VtHDl-~~~~~~~~~~~ll~~~G~I~~~g~~~e~~~~~~l~d~f~~~~~~l~~~~~~~~~f~~~v~~L~~~f~~~-~ 243 (712)
++||++|. ..+|......+++.+..+||.+.++|+.++++.+.|||++.|.+|+||.+++++|.++|..||+||.++ .
T Consensus 164 LlFVIRD~~~~TplenLe~~l~~dlqkIW~sl~KPe~~e~s~l~DfFdv~~v~Ls~~~~kedqF~e~V~~LrqrFv~s~~ 243 (772)
T KOG2203|consen 164 LLFVIRDKTGVTPLENLEDVLREDLQKIWDSLSKPEGHENSPLNDFFDVEFVGLSHKELKEDQFKEQVASLRQRFVHSGI 243 (772)
T ss_pred EEEEEecccCCCchHHhhHHHHHHHHHHHHhcCCcccccCCchhhhhceeeeecchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999 558888888999999999999999999999999999999999999999999999999999999999988 7
Q ss_pred CCCCCCCCCCCccccCCcccchHHHHHHHHhcCCCCCchhhHHHHhhchHHHHHHHHHhhhhhhhHHHHHHHHhcCCcch
Q 005138 244 APGGLAGDRRGVVPASGFSFSAHEIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYSSFAANEEWCELEAAVQSGPISS 323 (712)
Q Consensus 244 ~~~~~~~~~~~~ip~~g~~~~~~~~w~~I~~n~dldlp~q~~~~a~~rc~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (712)
.|.+++++||++||++||++|+++||++|++||||||||||.|||++||+||++|+|+.|.+++.|..+.+.++.|++++
T Consensus 244 s~~~f~~d~~~~iPadGfs~~a~qiWd~Ie~NKDLDLPtqqvlvAt~rceEIanE~~e~fitne~~~e~~e~l~g~l~s~ 323 (772)
T KOG2203|consen 244 SPYGFAGDYHGVIPADGFSFYAEQIWDVIEENKDLDLPTQQVLVATVRCEEIANEKLEEFITNEKWLELIEALQGNLVSG 323 (772)
T ss_pred CCCccccccCCcccccchhhhHHHHHHHHHhCcCCCCchhhhHHhhhhHHHHHHHHHHHhhhhhhHHHHHhhhcCCCccc
Confidence 78888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhchhhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHH
Q 005138 324 FGKKLSSILETCLSGYDGEVLYFDEGVRSAKRKQLEDKLLQLVQPAFQSMLGHIRSGTLDKFKDAFDKALSGGEGFSSAA 403 (712)
Q Consensus 324 ~~~~~~~~~~~~l~~yd~~a~~y~~~V~~~kr~~L~~~~~~~l~~~~~~~l~~l~~~~~~~f~~~l~~~~~~~~~F~~~~ 403 (712)
||+++.+++++||++||++|+||+.+||++||++|..++++.++|.|+.+|+|||..++++|+.++++.++.+.+|.+++
T Consensus 324 l~~kL~~i~e~~lseYD~qAs~y~~~V~~~KrqqL~~kl~s~v~~~fq~~L~~L~~~lle~fk~~~~~~~~~~~gF~es~ 403 (772)
T KOG2203|consen 324 LGKKLSSILEECLSEYDEQASRYDEGVYSEKRQQLNEKLLSHVYPTFQDVLGHLREGLLESFKLAFEKALKATEGFSESV 403 (772)
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHhhcCCCCCh
Q 005138 404 HHCSKFYMNLFDEACADAVIEQANWDMSKARDKFQRDIDAHIASVRAAKLGELTAIFEAKLNESLSGPVEALLDGANNET 483 (712)
Q Consensus 404 ~~~~~~~~~~f~~~~~~~~~~~~~w~~~~~~~~l~~~l~~~~~~~r~~~l~~~~~~~~k~~~~~l~~~v~~~l~~~~~~~ 483 (712)
..+.++|+.+|+++|+++.++++.|+.++++++|.++|++++.++|..+|++++..+++++..+|++||+.+|+++++++
T Consensus 404 ~~~~~~~~~~fde~~E~~~~~~~~wd~ski~~Kls~diea~i~~lr~akLke~~~~~e~~l~~else~Ve~ll~~~s~ev 483 (772)
T KOG2203|consen 404 ADGKQSCEKKFDEECETAKIEQALWDTSKIREKLSRDIEAHISSLRTAKLKEKTGLYEKKLVPELSEPVEALLDGASKEV 483 (772)
T ss_pred HHHHHHHHHHHHhhhHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHhhhHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhcccCCCCC
Q 005138 484 WPAIRKLLRCETESAISGFSDALYGFD--MDEETKEKMLASLENYAKGVVEAKAREESGRVLMRMKDRFTSLFSHDSDSM 561 (712)
Q Consensus 484 W~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~e~~~~~~~l~~~~~~~~~~~i~e~~~~~l~~l~~rFe~~FryD~~g~ 561 (712)
||.|++.|++..+.++..+++...||. +++++++++++.||.+||..++.|++|++++|+++||+||+++||||.|||
T Consensus 484 W~ti~n~f~~e~n~av~~~~~~~~~f~~~~de~t~~~m~~nlk~~a~~~~etk~~ee~~~il~rmrdRFe~vFr~Dsd~m 563 (772)
T KOG2203|consen 484 WDTIRNLFRRETNTAVYGLSNAVYGFEIGLDEETRDKMVKNLKNYAWGTVETKAKEEADRILMRMRDRFETVFRYDSDGM 563 (772)
T ss_pred HHHHHHHHHhccchhHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 999999999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCccchhhHHHHHHHHHHHHHHHHHhhccCCCccchhhhhhhhccCCCCCcccCCCCCCCCCCCCCccCCCCCCCc
Q 005138 562 PRVWTGKEDIRGITKLARSASLKLLSVMAAIRLDDETDNIESTLTLALVDSPSNAATNRSITNHDPLASSTWEQVPSSKT 641 (712)
Q Consensus 562 PR~W~~~~dI~~~f~~Ar~~al~ll~~~a~~rl~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 641 (712)
||+|++++|||+||+.||++||+||+|||.||++|+.+ .+|+.++.+...+.++ ++.+.||++++ .++.|
T Consensus 564 PrlWk~kedI~~~~r~ar~~aL~llsVla~irlsDnie---~~l~v~l~~~e~~~~s--~i~t~d~lass-----~~~~t 633 (772)
T KOG2203|consen 564 PRLWKGKEDIDAITRVARSAALKLLSVLAVIRLSDNIE---KTLTVALADEESNETS--SIYTNDPLASS-----ASFAT 633 (772)
T ss_pred cccccCcchhHHHHHHHHHHHHHHHHHHHhheecCCcc---ccCccccccCCCCCCC--cccccCccccC-----Cccce
Confidence 99999999999999999999999999999999996654 4466688876654333 25678888755 78899
Q ss_pred ccCHHHHHHHHHHHHhhhhHHHHHhhHHHHHhhhcCCCCCcHHHHHHHHHhchHHHHHHHhhhhhhhhhc
Q 005138 642 LITPVQCKSLWRQFKSETEYSVTQAISAQEANKRNNNWLPPPWAIAAMMVLGFNEFMTLLRYFIFLVRIE 711 (712)
Q Consensus 642 ll~~~~~~~~~~~f~~~~~~~~~~A~~~~ea~r~~~~~~iP~w~~~~l~vlGwnE~~~vl~nPl~~~~~~ 711 (712)
||||.||++||+||| ++.|++.||.++||++ ++++||||+|++|+||||||||++|||||||+...
T Consensus 634 ilt~vq~ksi~~qFk-rt~~~v~~d~k~s~~n---t~t~iPPw~~vlLiVLG~NEFmallRNPl~l~~~~ 699 (772)
T KOG2203|consen 634 ILTPVQCKSIWRQFK-RTEYTVTQDIKRSEIN---TNTWIPPWAIVLLIVLGWNEFMALLRNPLYLLVLF 699 (772)
T ss_pred eccHHHHHHHHHHHH-HhhhHHHHHHHHHHhc---CCCCCCcHHHHHHHHHhHHHHHHHHhchHHHHHHH
Confidence 999999999999999 7889999988887777 56678889999999999999999999999998764
No 2
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=100.00 E-value=7.2e-144 Score=1262.16 Aligned_cols=661 Identities=48% Similarity=0.788 Sum_probs=619.3
Q ss_pred EcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccccCC---CccchhccccCCCcccccchhhHHHHHHHHHHH
Q 005138 46 MGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGI---EPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 122 (712)
Q Consensus 46 iGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~~~~---~~~~~v~d~~g~~~~~r~~~~~~ferQrv~~A~ 122 (712)
+||||||||||||+|||+.|+||+. .||.|||+|+|+...... .+.++|+|++|+++++|+++.. ||||.++||+
T Consensus 1 ~g~qssgkstlln~lf~t~f~~m~~-~~r~qtt~gi~~~~~~~~~~~~~~~~v~d~eg~d~~er~~~~~-fe~~~alf~l 78 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQFDVMDE-SGRQQTTKGIWMAKAKEVESSESNILVLDVEGTDGRERGEDQD-FERKSALFAL 78 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCcccccc-ccccccchhhHHHhccccccCCCceEEEeCCCCCchhhccccc-hHHHHHHHHH
Confidence 6999999999999999999999999 999999999999887654 6788999999999999998755 9999999999
Q ss_pred HHHHHhhhccccCCCchhhhhChhhHHHHHHHHHHhh-----CCCCceEEEEecCCCC-cccccccccceecCCeEEEec
Q 005138 123 AVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLF-----SPRKTTLMFVIRDKTR-TPLENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 123 Ala~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~-----~~~g~tiL~VtHDl~~-~~~~~~~~~ll~~~G~I~~~g 196 (712)
|+++|+|+|+|++++|+++++|++++++||+++++|| ..++++++||+||+.. +|....+..++.+..+||...
T Consensus 79 a~s~~~iiN~w~~~iG~~~~an~~lLktvfevnl~lf~~~~~~~~k~~llfviRD~~~~tp~e~l~~~l~~dl~~iW~~i 158 (742)
T PF05879_consen 79 AVSDVLIINMWEHDIGRYQGANMGLLKTVFEVNLQLFGKSKSNDRKTLLLFVIRDHTGVTPLENLEETLREDLEKIWDSI 158 (742)
T ss_pred HhhhheeeehhhhhhhhhcccchHHHHHHHHHHHHHHhhcccCCCCceEEEEEeeCCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999 4578999999999965 787778888899999999999
Q ss_pred CcccccCCccchhhhcccccccccchhhHHHHHHHHHHhhhhhccc--cCCCCCCCCCCCccccCCcccchHHHHHHHHh
Q 005138 197 PKPQAHMETPLSEFFNVEVVALSSFEEKEELFKEQVASLRQRFYHS--VAPGGLAGDRRGVVPASGFSFSAHEIWKVIKE 274 (712)
Q Consensus 197 ~~~e~~~~~~l~d~f~~~~~~l~~~~~~~~~f~~~v~~L~~~f~~~--~~~~~~~~~~~~~ip~~g~~~~~~~~w~~I~~ 274 (712)
++|+.+++..+.|||++.|++|||+.+++++|.++|++||+||.++ ..+..+++.||++||+|||++|+++||++|++
T Consensus 159 ~kP~~~~~~~~~d~Fd~~f~~LpH~~~~~e~F~~~v~~Lr~rf~~~~~~~~~~~~~~y~~~iP~dG~~~y~~~iW~~I~~ 238 (742)
T PF05879_consen 159 SKPEGFENSSLSDFFDLEFTALPHKILQPEKFNEDVAKLRQRFVDSKNIEDGLFKPEYHRRIPADGFSMYAENIWEQIKN 238 (742)
T ss_pred cCcccccCCChhheeeeeeeccCchhhhHHHHHHHHHHHHHHHhccCcCCCCCCchhhcCCCChHHhHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999987 34445688999999999999999999999999
Q ss_pred cCCCCCchhhHHHHhhchHHHHHHHHHhhhhh-----hhHHHHHHHHhcCCcchHHHHHHHHHHHHhhchhhhhccccHH
Q 005138 275 NKDLDLPAHKVMVATVRCEEIANEKYSSFAAN-----EEWCELEAAVQSGPISSFGKKLSSILETCLSGYDGEVLYFDEG 349 (712)
Q Consensus 275 n~dldlp~q~~~~a~~rc~ei~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yd~~a~~y~~~ 349 (712)
||||||||||+|||+|||+||++++|..|.++ ..|..+.+..+.+++++||+.+.+++++||++||.+|+||+++
T Consensus 239 nkDLDLPtqq~mlA~fRCdEI~~e~l~~f~~~~~~~~~~~~~l~~~~~~~~~~~fg~~~~~l~~~~L~~YD~~AsrY~~~ 318 (742)
T PF05879_consen 239 NKDLDLPTQQEMLAQFRCDEIANEVLEEFDEDIKELIEKWSELEEAVQGGVVEDFGKKLKSLRDKALEEYDEEASRYHKS 318 (742)
T ss_pred CccCCCCcHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999987 5566666677777899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHhHHHHHHHHHHHHHhhhhhhccCCCC
Q 005138 350 VRSAKRKQLEDKLLQLVQPAFQSMLGHIRSGTLDKFKDAFDKALSGGEGFSSAAHHCSKFYMNLFDEACADAVIEQANWD 429 (712)
Q Consensus 350 V~~~kr~~L~~~~~~~l~~~~~~~l~~l~~~~~~~f~~~l~~~~~~~~~F~~~~~~~~~~~~~~f~~~~~~~~~~~~~w~ 429 (712)
||++||++|+++|.+.++|+|+.||+|||+.++++|++.+.+.++++.+|+.+++.|.+.++.+|++.|+++.++++.|+
T Consensus 319 V~~~Kr~eL~~~i~~~l~~lf~~qL~~L~~~~l~~Fk~~l~~~lk~~~~Fa~~v~~~~~~~~~~F~~~a~~~~i~~~~ws 398 (742)
T PF05879_consen 319 VYQEKRQELESKIDSELQPLFQKQLKHLRKKLLESFKEALSSALKSGEDFAEAVRECKQSALEEFEESAEDLVIEGADWS 398 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcc
Confidence 99999999999999999999999999999999999999999889888999999999999999999999999999999999
Q ss_pred c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHhhcCCCCChHHHHHHHHHHHHHHHHhhhhhhhcC
Q 005138 430 M-SKARDKFQRDIDAHIASVRAAKLGELTAIFEAKLNESLSGPVEALLDGANNETWPAIRKLLRCETESAISGFSDALYG 508 (712)
Q Consensus 430 ~-~~~~~~l~~~l~~~~~~~r~~~l~~~~~~~~k~~~~~l~~~v~~~l~~~~~~~W~~i~~~~~~~~~~~~~~~~~~~~~ 508 (712)
+ +++++.|.++|+++++++|.+++++|+++++|++++.|+++|..+|++|+++||++|++.|.+++++++++|.+++.|
T Consensus 399 ~se~~~~~L~~dLd~~~~~lR~~el~~l~~~~eK~l~~~l~e~v~~~l~~~~~d~Wd~I~~~f~~~~~~~~~~~~~~~~~ 478 (742)
T PF05879_consen 399 YSEEEREKLEEDLDEHSSKLRKEELNELVARIEKKLKSELKEPVESLLENPSPDMWDRIRKLFESATESAVSKFSDRLKG 478 (742)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9 599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHhhhhcccCCCCCCcccCCccchhhHHHHHHHHHHHHH
Q 005138 509 FDMDEETKEKMLASLENYAKGVVEAKAREES--GRVLMRMKDRFTSLFSHDSDSMPRVWTGKEDIRGITKLARSASLKLL 586 (712)
Q Consensus 509 ~~~~~~e~~~~~~~l~~~~~~~~~~~i~e~~--~~~l~~l~~rFe~~FryD~~g~PR~W~~~~dI~~~f~~Ar~~al~ll 586 (712)
|+++++|++.++++||.++|.+|+.+|||+. ++|+++||+||+++||||++|+||+|+|+|||++||++||++||+||
T Consensus 479 f~~s~~e~~~~~~~lr~~aw~~l~~ki~e~~~~~~ll~~LkdRFe~~FryDe~g~PRvW~~eddI~~if~~ARe~AL~LL 558 (742)
T PF05879_consen 479 FGLSEEENEKALKKLRRKAWSVLREKIREEASEDNLLIRLKDRFEDKFRYDEDGVPRVWKPEDDIDAIFRKAREHALKLL 558 (742)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHhCcCCCCCCCCCCCHhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999995 99999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCccchhhhhhhhccCCCCCcccCCCCCCCCCCCCCccCCCCCCCcccCHHHHHHHHHHHHhhhhHHHHHh
Q 005138 587 SVMAAIRLDDETDNIESTLTLALVDSPSNAATNRSITNHDPLASSTWEQVPSSKTLITPVQCKSLWRQFKSETEYSVTQA 666 (712)
Q Consensus 587 ~~~a~~rl~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ll~~~~~~~~~~~f~~~~~~~~~~A 666 (712)
|+||++||+++++++|.++.....+......++++..+.||+++++|+++++++|||||.||++||+||+++++++|+||
T Consensus 559 ~vLa~iRL~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~l~~~~~~~~~~~~~lls~~~~~~i~~~Fk~~~~~~~~eA 638 (742)
T PF05879_consen 559 PVLAIIRLSDGSEIIPDVDISSLEPASSSPGSSESISAIDPLDSSEWEEVDEFATLLSESQCKSIWRQFKREIDYTYVEA 638 (742)
T ss_pred HHHHhhhccCCcccCcccchhhccccCcCcccccccccccccccccccccccceEeccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987654433332222222233456789999999999999999999999999999999999999987
Q ss_pred hHHHHHhhhcCCCCCcHHHHHHHHHhchHHHHHHHhhhhhhhhhcC
Q 005138 667 ISAQEANKRNNNWLPPPWAIAAMMVLGFNEFMTLLRYFIFLVRIEI 712 (712)
Q Consensus 667 ~~~~ea~r~~~~~~iP~w~~~~l~vlGwnE~~~vl~nPl~~~~~~~ 712 (712)
++.+.+++++||+|||++|+||||||||+||||||||++++|
T Consensus 639 ----krs~~~~~~~iP~w~~~ll~vLGwNE~m~vLrnPl~~~l~li 680 (742)
T PF05879_consen 639 ----KRSIISSNTQIPPWMYLLLLVLGWNEFMAVLRNPLYFTLLLI 680 (742)
T ss_pred ----HHHHhcCCCCCCHHHHHHHHHHhHHHHHHHHHChHHHHHHHH
Confidence 345558899999999999999999999999999999999875
No 3
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.98 E-value=1.2e-32 Score=272.81 Aligned_cols=178 Identities=20% Similarity=0.227 Sum_probs=144.6
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee----
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW---- 82 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~---- 82 (712)
+|+++|++|.|+ ..+|++|+++|..|+ +++|+||+|||||||||||+|+. .|++|++...+. +.
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~Ge------vv~iiGpSGSGKSTlLRclN~LE----~~~~G~I~i~g~~~~~~~~ 71 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEKGE------VVVIIGPSGSGKSTLLRCLNGLE----EPDSGSITVDGEDVGDKKD 71 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcCCC------EEEEECCCCCCHHHHHHHHHCCc----CCCCceEEECCEeccchhh
Confidence 699999999995 568999999999999 99999999999999999999999 899999655442 11
Q ss_pred ---eccccC-------CCccchhcccc--------CCCccccc--------------------chhhHHHHHHHHHHHHH
Q 005138 83 ---MARCAG-------IEPCTLIMDLE--------GTDGRERG--------------------EDDTAFEKQSALFALAV 124 (712)
Q Consensus 83 ---~~~~~~-------~~~~~~v~d~~--------g~~~~~r~--------------------~~~~~ferQrv~~A~Al 124 (712)
+++.+| ..+...++++. |.+..+.. ...++.|+|||+|||||
T Consensus 72 ~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARAL 151 (240)
T COG1126 72 ILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARAL 151 (240)
T ss_pred HHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHH
Confidence 111222 23444444432 22221111 12234499999999999
Q ss_pred H---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccc
Q 005138 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (712)
Q Consensus 125 a---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~ 201 (712)
+ +++++|||||+|||+- ..+|++++++|.++ |.|+++|||++.++...+|++++|++ |+|+..|+|++.
T Consensus 152 aM~P~vmLFDEPTSALDPEl------v~EVL~vm~~LA~e-GmTMivVTHEM~FAr~VadrviFmd~-G~iie~g~p~~~ 223 (240)
T COG1126 152 AMDPKVMLFDEPTSALDPEL------VGEVLDVMKDLAEE-GMTMIIVTHEMGFAREVADRVIFMDQ-GKIIEEGPPEEF 223 (240)
T ss_pred cCCCCEEeecCCcccCCHHH------HHHHHHHHHHHHHc-CCeEEEEechhHHHHHhhheEEEeeC-CEEEEecCHHHH
Confidence 9 9999999999999998 99999999999986 99999999999999999999999999 999999988777
Q ss_pred cCC
Q 005138 202 HME 204 (712)
Q Consensus 202 ~~~ 204 (712)
+.+
T Consensus 224 f~~ 226 (240)
T COG1126 224 FDN 226 (240)
T ss_pred hcC
Confidence 755
No 4
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.97 E-value=7.7e-32 Score=278.23 Aligned_cols=195 Identities=20% Similarity=0.226 Sum_probs=158.1
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-e-----
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-I----- 81 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i----- 81 (712)
++++.|++..|+ ..++++++|++..|+ +++|+||||||||||||+|+|+. +|.+|++...+. +
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~------i~~iiGpNG~GKSTLLk~l~g~l----~p~~G~V~l~g~~i~~~~~ 71 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGE------ITGILGPNGSGKSTLLKCLAGLL----KPKSGEVLLDGKDIASLSP 71 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCc------EEEEECCCCCCHHHHHHHHhccC----CCCCCEEEECCCchhhcCH
Confidence 689999999995 557999999999999 99999999999999999999999 899998543331 1
Q ss_pred -eeccccC-------CCccchhcccc--CC------Cccccc-----------------------chhhHHHHHHHHHHH
Q 005138 82 -WMARCAG-------IEPCTLIMDLE--GT------DGRERG-----------------------EDDTAFEKQSALFAL 122 (712)
Q Consensus 82 -~~~~~~~-------~~~~~~v~d~~--g~------~~~~r~-----------------------~~~~~ferQrv~~A~ 122 (712)
.+++.++ ....+.|.|.. |. .+.... ...++.|||||.+|+
T Consensus 72 kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iAr 151 (258)
T COG1120 72 KELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIAR 151 (258)
T ss_pred HHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHH
Confidence 1111111 12233344432 11 110111 112334999999999
Q ss_pred HHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcc
Q 005138 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (712)
Q Consensus 123 Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~ 199 (712)
||+ ++|+|||||+.||..+ +-+++++++++.+++|.|+|+|+||++.+..+||++++|.+ |++++.|+|.
T Consensus 152 ALaQ~~~iLLLDEPTs~LDi~~------Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~-G~i~a~G~p~ 224 (258)
T COG1120 152 ALAQETPILLLDEPTSHLDIAH------QIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKD-GKIVAQGTPE 224 (258)
T ss_pred HHhcCCCEEEeCCCccccCHHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEEC-CeEEeecCcc
Confidence 999 9999999999999999 99999999999988899999999999999999999999999 9999999999
Q ss_pred cccCCccchhhhccccccccc
Q 005138 200 QAHMETPLSEFFNVEVVALSS 220 (712)
Q Consensus 200 e~~~~~~l~d~f~~~~~~l~~ 220 (712)
+++....+.+.|+++...+.+
T Consensus 225 evlT~e~l~~Vygv~~~~~~~ 245 (258)
T COG1120 225 EVLTEENLREVYGVDADVIED 245 (258)
T ss_pred hhcCHHHHHHHhCCceEEEEc
Confidence 999999999999998766554
No 5
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=4.5e-30 Score=264.01 Aligned_cols=188 Identities=18% Similarity=0.180 Sum_probs=148.7
Q ss_pred cccEEEEeeeeeecc-ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC----e
Q 005138 7 CCSTQLIDGDGTFNV-SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG----I 81 (712)
Q Consensus 7 ~~~I~l~~l~k~y~~-~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g----i 81 (712)
+++|++.|++..|+. .+|++++++++.|+ +++|+||||||||||+|+|.|++ +|.+|++...+. .
T Consensus 2 ~~~i~v~nl~v~y~~~~vl~~i~l~v~~G~------~~~iiGPNGaGKSTLlK~iLGll----~p~~G~i~~~g~~~~~~ 71 (254)
T COG1121 2 MPMIEVENLTVSYGNRPVLEDISLSVEKGE------ITALIGPNGAGKSTLLKAILGLL----KPSSGEIKIFGKPVRKR 71 (254)
T ss_pred CcEEEEeeeEEEECCEeeeeccEEEEcCCc------EEEEECCCCCCHHHHHHHHhCCC----cCCcceEEEcccccccc
Confidence 457999999999973 68999999999999 99999999999999999999999 899999654322 1
Q ss_pred eeccccCCCc---------cchhccccCCC--------ccc-----------------------ccchhhHHHHHHHHHH
Q 005138 82 WMARCAGIEP---------CTLIMDLEGTD--------GRE-----------------------RGEDDTAFEKQSALFA 121 (712)
Q Consensus 82 ~~~~~~~~~~---------~~~v~d~~g~~--------~~~-----------------------r~~~~~~ferQrv~~A 121 (712)
.-...++|-| .+.|.|+..+. .+. .....+..|+|||+||
T Consensus 72 ~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lA 151 (254)
T COG1121 72 RKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLA 151 (254)
T ss_pred ccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHH
Confidence 0011223221 22333332111 110 0012234499999999
Q ss_pred HHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCc
Q 005138 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (712)
Q Consensus 122 ~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~ 198 (712)
|||+ ++|+||||++|+|+.+ ...+++++.++.++ |+|||+||||++.+...+|+++++.. ++...|++
T Consensus 152 RAL~~~p~lllLDEP~~gvD~~~------~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~~~D~vi~Ln~--~~~~~G~~ 222 (254)
T COG1121 152 RALAQNPDLLLLDEPFTGVDVAG------QKEIYDLLKELRQE-GKTVLMVTHDLGLVMAYFDRVICLNR--HLIASGPP 222 (254)
T ss_pred HHhccCCCEEEecCCcccCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCcHHhHhhCCEEEEEcC--eeEeccCh
Confidence 9999 9999999999999999 99999999999988 99999999999999999999887765 89999999
Q ss_pred ccccCCccchhhhcc
Q 005138 199 PQAHMETPLSEFFNV 213 (712)
Q Consensus 199 ~e~~~~~~l~d~f~~ 213 (712)
.+.+....+...|..
T Consensus 223 ~~~~~~~~l~~~~g~ 237 (254)
T COG1121 223 EEVLTEENLEKAFGG 237 (254)
T ss_pred hhccCHHHHHHHhCc
Confidence 999887777777763
No 6
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.96 E-value=2.9e-29 Score=252.24 Aligned_cols=189 Identities=15% Similarity=0.153 Sum_probs=148.2
Q ss_pred cccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC------
Q 005138 7 CCSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------ 79 (712)
Q Consensus 7 ~~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~------ 79 (712)
.+.|++++++++|+ ..++++++++|..|+ +++|+||+|||||||||+|.|+. +|++|++...+
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Ge------i~~iiGgSGsGKStlLr~I~Gll----~P~~GeI~i~G~~i~~l 75 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGE------ILAILGGSGSGKSTLLRLILGLL----RPDKGEILIDGEDIPQL 75 (263)
T ss_pred cceEEEeeeeeecCCEEEecCceeeecCCc------EEEEECCCCcCHHHHHHHHhccC----CCCCCeEEEcCcchhcc
Confidence 45799999999995 457999999999999 99999999999999999999999 99999954322
Q ss_pred ------------CeeeccccCCCccchhcccc--------------------------CCCcc---cccchhhHHHHHHH
Q 005138 80 ------------GIWMARCAGIEPCTLIMDLE--------------------------GTDGR---ERGEDDTAFEKQSA 118 (712)
Q Consensus 80 ------------gi~~~~~~~~~~~~~v~d~~--------------------------g~~~~---~r~~~~~~ferQrv 118 (712)
|+.++.. .....+.|.|+. |+.+. .-..+.+..|++|+
T Consensus 76 s~~~~~~ir~r~GvlFQ~g-ALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRv 154 (263)
T COG1127 76 SEEELYEIRKRMGVLFQQG-ALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRV 154 (263)
T ss_pred CHHHHHHHHhheeEEeecc-ccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHH
Confidence 1222111 112222233332 33222 11123345599999
Q ss_pred HHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEe
Q 005138 119 LFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (712)
Q Consensus 119 ~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~ 195 (712)
++|||++ ++|++||||+||||.. ...+-++++++.+..|.|+++||||++.+..+||+++++.+ |+|...
T Consensus 155 aLARAialdPell~~DEPtsGLDPI~------a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~-gkv~~~ 227 (263)
T COG1127 155 ALARAIALDPELLFLDEPTSGLDPIS------AGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLAD-GKVIAE 227 (263)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCcch------HHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeC-CEEEEe
Confidence 9999999 9999999999999998 88889999999988999999999999999999999999999 999999
Q ss_pred cCcccccC--Cccchhhhcc
Q 005138 196 VPKPQAHM--ETPLSEFFNV 213 (712)
Q Consensus 196 g~~~e~~~--~~~l~d~f~~ 213 (712)
|++++..+ +.-+.+||+-
T Consensus 228 Gt~~el~~sd~P~v~qf~~G 247 (263)
T COG1127 228 GTPEELLASDDPWVRQFFNG 247 (263)
T ss_pred CCHHHHHhCCCHHHHHHhcC
Confidence 99988764 3344555543
No 7
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.96 E-value=6.6e-30 Score=257.97 Aligned_cols=179 Identities=15% Similarity=0.131 Sum_probs=146.1
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC-------C
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------G 80 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~-------g 80 (712)
||++.|++|.|+ ..++++++++|+.|+ +++++||+||||||+|++|+++. .|++|++...+ .
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~ge------f~vliGpSGsGKTTtLkMINrLi----ept~G~I~i~g~~i~~~d~ 70 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGE------FLVLIGPSGSGKTTTLKMINRLI----EPTSGEILIDGEDISDLDP 70 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCe------EEEEECCCCCcHHHHHHHHhccc----CCCCceEEECCeecccCCH
Confidence 589999999995 568999999999999 99999999999999999999999 99999964332 1
Q ss_pred eeeccccCC-------Ccc-------chhccccCCCcccc----------------------cchhhHHHHHHHHHHHHH
Q 005138 81 IWMARCAGI-------EPC-------TLIMDLEGTDGRER----------------------GEDDTAFEKQSALFALAV 124 (712)
Q Consensus 81 i~~~~~~~~-------~~~-------~~v~d~~g~~~~~r----------------------~~~~~~ferQrv~~A~Al 124 (712)
+.+++.+|| .|+ .+|....|.+.... ..+.++.|+||+.+||||
T Consensus 71 ~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RAL 150 (309)
T COG1125 71 VELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARAL 150 (309)
T ss_pred HHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHH
Confidence 233334442 333 33333333322111 122344499999999999
Q ss_pred H---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccc
Q 005138 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (712)
Q Consensus 125 a---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~ 201 (712)
+ ++|++|||+++|||.. +..+-+.++++.++.|+||||||||++++..++|++++|.+ |+|+..++|.++
T Consensus 151 AadP~ilLMDEPFgALDpI~------R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~-G~i~Q~~~P~~i 223 (309)
T COG1125 151 AADPPILLMDEPFGALDPIT------RKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDA-GEIVQYDTPDEI 223 (309)
T ss_pred hcCCCeEeecCCccccChhh------HHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecC-CeEEEeCCHHHH
Confidence 9 9999999999999998 99999999999988999999999999999999999999998 999999999888
Q ss_pred cCC
Q 005138 202 HME 204 (712)
Q Consensus 202 ~~~ 204 (712)
+.+
T Consensus 224 l~~ 226 (309)
T COG1125 224 LAN 226 (309)
T ss_pred HhC
Confidence 754
No 8
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=5e-29 Score=258.37 Aligned_cols=180 Identities=14% Similarity=0.177 Sum_probs=147.7
Q ss_pred cEEEEeeeeeecc------ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC--
Q 005138 9 STQLIDGDGTFNV------SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-- 80 (712)
Q Consensus 9 ~I~l~~l~k~y~~------~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-- 80 (712)
||++.+++|.|.. .++++++++|+.|+ |+||+|.+|||||||+|+|+|+. .|++|++...+.
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~Ge------I~GIIG~SGAGKSTLiR~iN~Le----~PtsG~v~v~G~di 70 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGE------IFGIIGYSGAGKSTLLRLINLLE----RPTSGSVFVDGQDL 70 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCc------EEEEEcCCCCcHHHHHHHHhccC----CCCCceEEEcCEec
Confidence 5899999999953 47999999999999 99999999999999999999999 999999543321
Q ss_pred --------eeeccccC--------------CCccchhccccCCCccccc--------------------chhhHHHHHHH
Q 005138 81 --------IWMARCAG--------------IEPCTLIMDLEGTDGRERG--------------------EDDTAFEKQSA 118 (712)
Q Consensus 81 --------i~~~~~~~--------------~~~~~~v~d~~g~~~~~r~--------------------~~~~~ferQrv 118 (712)
...++.+| ++|..+.+...|.+..+.. ...+..|||||
T Consensus 71 ~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRV 150 (339)
T COG1135 71 TALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRV 150 (339)
T ss_pred ccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHH
Confidence 00111122 2345555555555433221 12234499999
Q ss_pred HHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEe
Q 005138 119 LFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (712)
Q Consensus 119 ~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~ 195 (712)
+|||||+ ++|+.|||||+|||.. .+.|+++++++.++.|.||++|||.|+.+..+|+++.+|+. |+++..
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~T------T~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~-G~lvE~ 223 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPET------TQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQ-GRLVEE 223 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHH------HHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeC-CEEEEe
Confidence 9999999 9999999999999999 99999999999999999999999999999999999999999 999999
Q ss_pred cCcccccCCc
Q 005138 196 VPKPQAHMET 205 (712)
Q Consensus 196 g~~~e~~~~~ 205 (712)
|+..++|.++
T Consensus 224 G~v~~vF~~P 233 (339)
T COG1135 224 GTVSEVFANP 233 (339)
T ss_pred ccHHHhhcCc
Confidence 9988887653
No 9
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.95 E-value=1.2e-28 Score=264.90 Aligned_cols=181 Identities=13% Similarity=0.152 Sum_probs=146.0
Q ss_pred cccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee---
Q 005138 7 CCSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW--- 82 (712)
Q Consensus 7 ~~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~--- 82 (712)
++.+++.|++|.|+ ..++++++++|..|+ +++|+||||||||||||+|+|+. .|++|++...+...
T Consensus 3 ~~~l~i~~v~k~yg~~~av~~isl~i~~Ge------f~~lLGPSGcGKTTlLR~IAGfe----~p~~G~I~l~G~~i~~l 72 (352)
T COG3842 3 KPALEIRNVSKSFGDFTAVDDISLDIKKGE------FVTLLGPSGCGKTTLLRMIAGFE----QPSSGEILLDGEDITDV 72 (352)
T ss_pred CceEEEEeeeeecCCeeEEecceeeecCCc------EEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEECCCC
Confidence 45799999999996 567999999999999 99999999999999999999999 89999854322110
Q ss_pred ---------eccccCCCccchhccccCCCcc-------c----cc-----------------chhhHHHHHHHHHHHHHH
Q 005138 83 ---------MARCAGIEPCTLIMDLEGTDGR-------E----RG-----------------EDDTAFEKQSALFALAVS 125 (712)
Q Consensus 83 ---------~~~~~~~~~~~~v~d~~g~~~~-------~----r~-----------------~~~~~ferQrv~~A~Ala 125 (712)
+.+.....|++.|.++.+..-. . +. ...+..|+|||++||||+
T Consensus 73 pp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~ 152 (352)
T COG3842 73 PPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALV 152 (352)
T ss_pred ChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhh
Confidence 0111123555666555322111 0 00 112233999999999999
Q ss_pred ---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCccccc
Q 005138 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (712)
Q Consensus 126 ---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~ 202 (712)
++||||||.++||..- +..+...++++.++.|+|.|+||||.+++...+|++++|.+ |+|...|+|.+++
T Consensus 153 ~~P~vLLLDEPlSaLD~kL------R~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~-G~I~Q~gtP~eiY 225 (352)
T COG3842 153 PEPKVLLLDEPLSALDAKL------REQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMND-GRIEQVGTPEEIY 225 (352)
T ss_pred cCcchhhhcCcccchhHHH------HHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccC-CceeecCCHHHHh
Confidence 8999999999999987 88898999999988899999999999999999999999999 9999999999987
Q ss_pred CC
Q 005138 203 ME 204 (712)
Q Consensus 203 ~~ 204 (712)
..
T Consensus 226 ~~ 227 (352)
T COG3842 226 ER 227 (352)
T ss_pred hC
Confidence 54
No 10
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.8e-28 Score=249.26 Aligned_cols=166 Identities=18% Similarity=0.242 Sum_probs=132.4
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC------
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------ 80 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g------ 80 (712)
.++.+.++++.|+ ..+|++++++|..|+ +|+|+||+|||||||||+|+|+. +|++|++...+.
T Consensus 2 ~~l~i~~v~~~f~~~~vl~~i~L~v~~GE------fvsilGpSGcGKSTLLriiAGL~----~p~~G~V~~~g~~v~~p~ 71 (248)
T COG1116 2 ALLEIEGVSKSFGGVEVLEDINLSVEKGE------FVAILGPSGCGKSTLLRLIAGLE----KPTSGEVLLDGRPVTGPG 71 (248)
T ss_pred ceEEEEeeEEEeCceEEeccceeEECCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCcccCCCC
Confidence 4689999999996 568999999999999 99999999999999999999999 999998543321
Q ss_pred ---eeeccccC-------CCccchhccccCCCccccc--------------------chhhHHHHHHHHHHHHHH---HH
Q 005138 81 ---IWMARCAG-------IEPCTLIMDLEGTDGRERG--------------------EDDTAFEKQSALFALAVS---DI 127 (712)
Q Consensus 81 ---i~~~~~~~-------~~~~~~v~d~~g~~~~~r~--------------------~~~~~ferQrv~~A~Ala---~i 127 (712)
.++.+... .+|..+.++..|....++. ...++.|||||+||+|++ ++
T Consensus 72 ~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~l 151 (248)
T COG1116 72 PDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKL 151 (248)
T ss_pred CCEEEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCE
Confidence 11111111 2334444444332222211 223445999999999999 99
Q ss_pred hhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecC
Q 005138 128 VLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDI 189 (712)
Q Consensus 128 LlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~ 189 (712)
|+||||+++||... +..+.+.+.++.++.++|+||||||++++..++|++++|.+.
T Consensus 152 LLlDEPFgALDalT------R~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 152 LLLDEPFGALDALT------REELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred EEEcCCcchhhHHH------HHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 99999999999998 999999999999888999999999999999999999999873
No 11
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.4e-28 Score=246.62 Aligned_cols=180 Identities=15% Similarity=0.170 Sum_probs=142.5
Q ss_pred ccEEEEeeeeeec-cc----cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee
Q 005138 8 CSTQLIDGDGTFN-VS----GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW 82 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~----~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~ 82 (712)
++++++|+++.|. .. ++++|+|++..|+ ++||+|++|||||||.++|+|+. +|++|++...+...
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge------~lgivGeSGsGKSTL~r~l~Gl~----~p~~G~I~~~G~~~ 71 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGE------TLGIVGESGSGKSTLARLLAGLE----KPSSGSILLDGKPL 71 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCC------EEEEEcCCCCCHHHHHHHHhccc----CCCCceEEECCccc
Confidence 5799999999994 44 7999999999999 99999999999999999999999 99999954333111
Q ss_pred e--------ccccC---------CCccch-----------------------hccccCCCcc---cccchhhHHHHHHHH
Q 005138 83 M--------ARCAG---------IEPCTL-----------------------IMDLEGTDGR---ERGEDDTAFEKQSAL 119 (712)
Q Consensus 83 ~--------~~~~~---------~~~~~~-----------------------v~d~~g~~~~---~r~~~~~~ferQrv~ 119 (712)
. .+.+. ..|... +++..|+++. .+....++.|+||++
T Consensus 72 ~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRia 151 (252)
T COG1124 72 APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIA 151 (252)
T ss_pred CccccchhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHH
Confidence 0 00000 111111 1122233221 111223455999999
Q ss_pred HHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEec
Q 005138 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 120 ~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g 196 (712)
||+||+ ++||+||||++||... +..|++++.++.++++.|+||||||+..+..+|+|+++|.+ |+++..+
T Consensus 152 IARAL~~~PklLIlDEptSaLD~si------Qa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~-G~ivE~~ 224 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSV------QAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDN-GQIVEIG 224 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHH------HHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeC-CeEEEee
Confidence 999999 9999999999999988 99999999999999999999999999999999999999999 9999999
Q ss_pred CcccccCC
Q 005138 197 PKPQAHME 204 (712)
Q Consensus 197 ~~~e~~~~ 204 (712)
+.++++..
T Consensus 225 ~~~~l~~~ 232 (252)
T COG1124 225 PTEELLSH 232 (252)
T ss_pred chhhhhcC
Confidence 98776643
No 12
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.95 E-value=2e-28 Score=261.94 Aligned_cols=181 Identities=16% Similarity=0.156 Sum_probs=146.5
Q ss_pred cccEEEEeeeeeeccc-cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC------
Q 005138 7 CCSTQLIDGDGTFNVS-GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------ 79 (712)
Q Consensus 7 ~~~I~l~~l~k~y~~~-~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~------ 79 (712)
|++|++.|++|.|+.. ++++++++|..|+ +++|+||||||||||||+|+|+. +|++|++...+
T Consensus 1 M~~i~l~~v~K~yg~~~~l~~i~l~i~~Ge------f~vllGPSGcGKSTlLr~IAGLe----~~~~G~I~i~g~~vt~l 70 (338)
T COG3839 1 MAELELKNVRKSFGSFEVLKDVNLDIEDGE------FVVLLGPSGCGKSTLLRMIAGLE----EPTSGEILIDGRDVTDL 70 (338)
T ss_pred CcEEEEeeeEEEcCCceeeecceEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEECCCC
Confidence 3579999999999866 8999999999999 99999999999999999999999 99999954322
Q ss_pred -----Cee-eccccCCCccchhccccCCCcccc---------------------------cchhhHHHHHHHHHHHHHH-
Q 005138 80 -----GIW-MARCAGIEPCTLIMDLEGTDGRER---------------------------GEDDTAFEKQSALFALAVS- 125 (712)
Q Consensus 80 -----gi~-~~~~~~~~~~~~v~d~~g~~~~~r---------------------------~~~~~~ferQrv~~A~Ala- 125 (712)
++- +.+.....|.+.|.++.+.+-..+ ....++.|||||++|+|++
T Consensus 71 ~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr 150 (338)
T COG3839 71 PPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVR 150 (338)
T ss_pred ChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhc
Confidence 211 111222345555555443322211 1122344999999999999
Q ss_pred --HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccccC
Q 005138 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (712)
Q Consensus 126 --~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~~ 203 (712)
+++++|||+++||..- +..+...++++.++.|+|+|+||||..++..+++++++|.+ |+|...|+|.+++.
T Consensus 151 ~P~v~L~DEPlSnLDa~l------R~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~-G~i~Q~g~p~ely~ 223 (338)
T COG3839 151 KPKVFLLDEPLSNLDAKL------RVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMND-GRIQQVGTPLELYE 223 (338)
T ss_pred CCCEEEecCchhHhhHHH------HHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeC-CeeeecCChHHHhh
Confidence 8999999999999987 88888899999888899999999999999999999999997 99999999998875
Q ss_pred C
Q 005138 204 E 204 (712)
Q Consensus 204 ~ 204 (712)
.
T Consensus 224 ~ 224 (338)
T COG3839 224 R 224 (338)
T ss_pred C
Confidence 4
No 13
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.5e-28 Score=243.89 Aligned_cols=188 Identities=20% Similarity=0.233 Sum_probs=147.0
Q ss_pred ccEEEEeeeeee-c-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee--
Q 005138 8 CSTQLIDGDGTF-N-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW-- 82 (712)
Q Consensus 8 ~~I~l~~l~k~y-~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~-- 82 (712)
++|+++|+++.| + ..+|++|+++|+.|| +|+|+||+|||||||||+|+|+. +|++|++...+- ++
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE------~VaiIG~SGaGKSTLLR~lngl~----d~t~G~i~~~g~~i~~~ 71 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGE------MVAIIGPSGAGKSTLLRSLNGLV----DPTSGEILFNGVQITKL 71 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCc------EEEEECCCCCcHHHHHHHHhccc----CCCcceEEecccchhcc
Confidence 579999999999 4 457999999999999 99999999999999999999999 999998532221 10
Q ss_pred -------eccccCC-------Cccchhc---------------cccCCCccc--------------------ccchhhHH
Q 005138 83 -------MARCAGI-------EPCTLIM---------------DLEGTDGRE--------------------RGEDDTAF 113 (712)
Q Consensus 83 -------~~~~~~~-------~~~~~v~---------------d~~g~~~~~--------------------r~~~~~~f 113 (712)
+...+|+ .+...|+ ...|+.+.+ +.+..+..
T Consensus 72 ~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGG 151 (258)
T COG3638 72 KGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGG 151 (258)
T ss_pred chHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcc
Confidence 0111111 1111111 122333221 11222334
Q ss_pred HHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCC
Q 005138 114 EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ 190 (712)
Q Consensus 114 erQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G 190 (712)
|+|||+||+||+ +++|-|||+++|||.. .+.|++.+++++++.|.|+|++.|+++.+..+|+|++-+.+ |
T Consensus 152 QQQRVaIARaL~Q~pkiILADEPvasLDp~~------a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~-G 224 (258)
T COG3638 152 QQQRVAIARALVQQPKIILADEPVASLDPES------AKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKA-G 224 (258)
T ss_pred hhHHHHHHHHHhcCCCEEecCCcccccChhh------HHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecC-C
Confidence 999999999999 9999999999999999 99999999999999999999999999999999999999999 9
Q ss_pred eEEEecCcccccCCccchhhhcc
Q 005138 191 KIWDSVPKPQAHMETPLSEFFNV 213 (712)
Q Consensus 191 ~I~~~g~~~e~~~~~~l~d~f~~ 213 (712)
+|+.+|++.+ +....+.+.|+-
T Consensus 225 ~ivfDg~~~e-l~~~~~~~iYg~ 246 (258)
T COG3638 225 RIVFDGPASE-LTDEALDEIYGN 246 (258)
T ss_pred cEEEeCChhh-hhHHHHHHHhcc
Confidence 9999999877 555566666664
No 14
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.7e-28 Score=251.41 Aligned_cols=181 Identities=19% Similarity=0.238 Sum_probs=145.4
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeecc-
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMAR- 85 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~- 85 (712)
|+|.+.++++.|+ ..++++|+++|..|+ +++++|||||||||||++|+|+. .|++|++...+..|+.-
T Consensus 1 m~i~i~~~~~~~~~~~a~~di~l~i~~Ge------~vaLlGpSGaGKsTlLRiIAGLe----~p~~G~I~~~~~~l~D~~ 70 (345)
T COG1118 1 MSIRINNVKKRFGAFGALDDISLDIKSGE------LVALLGPSGAGKSTLLRIIAGLE----TPDAGRIRLNGRVLFDVS 70 (345)
T ss_pred CceeehhhhhhcccccccccceeeecCCc------EEEEECCCCCcHHHHHHHHhCcC----CCCCceEEECCEeccchh
Confidence 3699999999995 457899999999999 99999999999999999999999 89999965444433321
Q ss_pred -------ccC-------CCccchhcccc--CCCcc----------ccc-----------------chhhHHHHHHHHHHH
Q 005138 86 -------CAG-------IEPCTLIMDLE--GTDGR----------ERG-----------------EDDTAFEKQSALFAL 122 (712)
Q Consensus 86 -------~~~-------~~~~~~v~d~~--g~~~~----------~r~-----------------~~~~~ferQrv~~A~ 122 (712)
.+| ..+.+.|.|+. |+..+ .+. ...+..||||+++|+
T Consensus 71 ~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALAR 150 (345)
T COG1118 71 NLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALAR 150 (345)
T ss_pred ccchhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHH
Confidence 222 23444444433 22110 000 112334999999999
Q ss_pred HHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcc
Q 005138 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (712)
Q Consensus 123 Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~ 199 (712)
|++ ++|+||||+++||..- ++.+...++++.++.|.|.||||||.+++..+|+++++|.+ |+|...|++.
T Consensus 151 ALA~eP~vLLLDEPf~ALDa~v------r~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~-G~Ieqvg~p~ 223 (345)
T COG1118 151 ALAVEPKVLLLDEPFGALDAKV------RKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQ-GRIEQVGPPD 223 (345)
T ss_pred HhhcCCCeEeecCCchhhhHHH------HHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecC-CeeeeeCCHH
Confidence 999 9999999999999987 89999999999888899999999999999999999999999 9999999999
Q ss_pred cccCCc
Q 005138 200 QAHMET 205 (712)
Q Consensus 200 e~~~~~ 205 (712)
+++..+
T Consensus 224 ev~~~P 229 (345)
T COG1118 224 EVYDHP 229 (345)
T ss_pred HHhcCC
Confidence 987653
No 15
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.9e-28 Score=238.64 Aligned_cols=176 Identities=13% Similarity=0.134 Sum_probs=139.8
Q ss_pred cEEEEeeeeeecc--ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC-------
Q 005138 9 STQLIDGDGTFNV--SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (712)
Q Consensus 9 ~I~l~~l~k~y~~--~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~------- 79 (712)
|+++.+++|+|+. .++++++|++..|+ |+||+|||||||||+|++|++++ .|++|.+...+
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Ge------i~GlLG~NGAGKTT~LRmiatlL----~P~~G~v~idg~d~~~~p 70 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGE------ITGLLGENGAGKTTLLRMIATLL----IPDSGKVTIDGVDTVRDP 70 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccce------EEEEEcCCCCCchhHHHHHHHhc----cCCCceEEEeecccccCh
Confidence 5899999999953 47999999999999 99999999999999999999999 89999843211
Q ss_pred -------CeeeccccC-------CCccchhccccCCCccc--------------------ccchhhHHHHHHHHHHHHHH
Q 005138 80 -------GIWMARCAG-------IEPCTLIMDLEGTDGRE--------------------RGEDDTAFEKQSALFALAVS 125 (712)
Q Consensus 80 -------gi~~~~~~~-------~~~~~~v~d~~g~~~~~--------------------r~~~~~~ferQrv~~A~Ala 125 (712)
|+.. +..+ .++..++-...|+...+ |....+..|||||.+|+|+.
T Consensus 71 ~~vrr~IGVl~-~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlv 149 (245)
T COG4555 71 SFVRRKIGVLF-GERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALV 149 (245)
T ss_pred HHHhhhcceec-CCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHh
Confidence 1222 1111 12333333334443321 11112233999999999999
Q ss_pred ---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCccccc
Q 005138 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (712)
Q Consensus 126 ---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~ 202 (712)
+++++||||+|||... ++.+.+.+.++..+ |.++||+||++.++..+||+++++.. |+++..|+++++.
T Consensus 150 h~P~i~vlDEP~sGLDi~~------~r~~~dfi~q~k~e-gr~viFSSH~m~EvealCDrvivlh~-Gevv~~gs~~~l~ 221 (245)
T COG4555 150 HDPSILVLDEPTSGLDIRT------RRKFHDFIKQLKNE-GRAVIFSSHIMQEVEALCDRVIVLHK-GEVVLEGSIEALD 221 (245)
T ss_pred cCCCeEEEcCCCCCccHHH------HHHHHHHHHHhhcC-CcEEEEecccHHHHHHhhheEEEEec-CcEEEcCCHHHHH
Confidence 9999999999999998 99999999999775 99999999999999999999999999 9999999988765
Q ss_pred C
Q 005138 203 M 203 (712)
Q Consensus 203 ~ 203 (712)
.
T Consensus 222 ~ 222 (245)
T COG4555 222 A 222 (245)
T ss_pred H
Confidence 3
No 16
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.94 E-value=1.5e-27 Score=254.01 Aligned_cols=177 Identities=16% Similarity=0.204 Sum_probs=140.5
Q ss_pred ccEEEEeeeeeec--cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee--
Q 005138 8 CSTQLIDGDGTFN--VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW-- 82 (712)
Q Consensus 8 ~~I~l~~l~k~y~--~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~-- 82 (712)
..+++.|++|.|+ ..+|+++++++..|+ ++||+||||||||||||+|+|+. .|++|++...+. .+
T Consensus 3 ~~i~~~~l~k~~~~~~~~l~~vs~~i~~Ge------i~gllG~NGAGKTTllk~l~gl~----~p~~G~i~i~G~~~~~~ 72 (293)
T COG1131 3 EVIEVRNLTKKYGGDKTALDGVSFEVEPGE------IFGLLGPNGAGKTTLLKILAGLL----KPTSGEILVLGYDVVKE 72 (293)
T ss_pred ceeeecceEEEeCCCCEEEeceeEEEcCCe------EEEEECCCCCCHHHHHHHHhCCc----CCCceEEEEcCEeCccC
Confidence 4689999999997 368999999999999 99999999999999999999999 899999544331 11
Q ss_pred ---eccccCC-------Cccch-------------------------hccccCCCc--ccccchhhHHHHHHHHHHHHHH
Q 005138 83 ---MARCAGI-------EPCTL-------------------------IMDLEGTDG--RERGEDDTAFEKQSALFALAVS 125 (712)
Q Consensus 83 ---~~~~~~~-------~~~~~-------------------------v~d~~g~~~--~~r~~~~~~ferQrv~~A~Ala 125 (712)
..+.+++ .+.+. +++..|+.. ..+....+..||||+.||+||+
T Consensus 73 ~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~ 152 (293)
T COG1131 73 PAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALL 152 (293)
T ss_pred HHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHh
Confidence 0111121 11111 122223333 2223344566999999999999
Q ss_pred ---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccc
Q 005138 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (712)
Q Consensus 126 ---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~ 201 (712)
+++||||||+||||.. +..+.++++++.++.|+|||++||.++++...||+++++.+ |+++..|++.+.
T Consensus 153 ~~P~lliLDEPt~GLDp~~------~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~-G~~~~~g~~~~l 224 (293)
T COG1131 153 HDPELLILDEPTSGLDPES------RREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILND-GKIIAEGTPEEL 224 (293)
T ss_pred cCCCEEEECCCCcCCCHHH------HHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeC-CEEEEeCCHHHH
Confidence 9999999999999999 99999999999987458999999999999999999999999 999999976553
No 17
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=7.9e-28 Score=234.74 Aligned_cols=191 Identities=19% Similarity=0.261 Sum_probs=154.2
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeee----
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM---- 83 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~---- 83 (712)
||++.|++|.|+ ..++++++++++.|. +++++|||||||||||.+++.+. ++++|.+... |..+
T Consensus 1 MI~i~nv~K~y~~~~vl~~isl~i~~g~------iTs~IGPNGAGKSTLLS~~sRL~----~~d~G~i~i~-g~~~~~~~ 69 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDVSLDIPKGG------ITSIIGPNGAGKSTLLSMMSRLL----KKDSGEITID-GLELTSTP 69 (252)
T ss_pred CeeehhhhHhhCCEEeeccceeeecCCc------eeEEECCCCccHHHHHHHHHHhc----cccCceEEEe-eeecccCC
Confidence 589999999996 447999999999999 99999999999999999999999 8899984322 1111
Q ss_pred ----ccc-------cCCCccchhccccCC--C----cccccchh-----------------------hHHHHHHHHHHHH
Q 005138 84 ----ARC-------AGIEPCTLIMDLEGT--D----GRERGEDD-----------------------TAFEKQSALFALA 123 (712)
Q Consensus 84 ----~~~-------~~~~~~~~v~d~~g~--~----~~~r~~~~-----------------------~~ferQrv~~A~A 123 (712)
++. ..+.....|-|+.+. . ++.+.++. ++.||||+.+|+.
T Consensus 70 s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMV 149 (252)
T COG4604 70 SKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMV 149 (252)
T ss_pred hHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhhee
Confidence 111 111223334444332 1 12222221 2239999999999
Q ss_pred HH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCccc
Q 005138 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (712)
Q Consensus 124 la---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e 200 (712)
++ |.++||||.++||..+ ...+++.++++.++.|+||++|.||++++..++|.++-+.+ |+++..|+|++
T Consensus 150 laQdTdyvlLDEPLNNLDmkH------sv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~-G~vv~~G~~~e 222 (252)
T COG4604 150 LAQDTDYVLLDEPLNNLDMKH------SVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKN-GKVVKQGSPDE 222 (252)
T ss_pred eeccCcEEEecCcccccchHH------HHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecC-CEEEecCCHHH
Confidence 99 9999999999999998 89999999999999999999999999999999999999999 99999999999
Q ss_pred ccCCccchhhhcccccc
Q 005138 201 AHMETPLSEFFNVEVVA 217 (712)
Q Consensus 201 ~~~~~~l~d~f~~~~~~ 217 (712)
++....+++.|+.++..
T Consensus 223 ii~~~~L~eiydm~i~v 239 (252)
T COG4604 223 IIQPEILSEIYDMDIPV 239 (252)
T ss_pred hcCHHHHHHHhcCCcee
Confidence 99999999999987643
No 18
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.94 E-value=7.6e-28 Score=243.13 Aligned_cols=185 Identities=14% Similarity=0.167 Sum_probs=144.1
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC-------
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~------- 79 (712)
+++++.+++|+|+ -.++++|++++..|+ +++||||||||||||+|+|+|.. +|++|++...+
T Consensus 3 ~lL~v~~l~k~FGGl~Al~~Vsl~v~~Ge------i~~LIGPNGAGKTTlfNlitG~~----~P~~G~v~~~G~~it~l~ 72 (250)
T COG0411 3 PLLEVRGLSKRFGGLTAVNDVSLEVRPGE------IVGLIGPNGAGKTTLFNLITGFY----KPSSGTVIFRGRDITGLP 72 (250)
T ss_pred ceeeeccceeecCCEEEEeceeEEEcCCe------EEEEECCCCCCceeeeeeecccc----cCCCceEEECCcccCCCC
Confidence 4688999999995 467999999999999 99999999999999999999999 99999953221
Q ss_pred -------Ceeec-cccCCCccchhcccc-------------------------------------CCCcc--cccchhhH
Q 005138 80 -------GIWMA-RCAGIEPCTLIMDLE-------------------------------------GTDGR--ERGEDDTA 112 (712)
Q Consensus 80 -------gi~~~-~~~~~~~~~~v~d~~-------------------------------------g~~~~--~r~~~~~~ 112 (712)
|+... +.+...+.+.|+++. |+... ...+....
T Consensus 73 p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~Lsy 152 (250)
T COG0411 73 PHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSY 152 (250)
T ss_pred HHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCCh
Confidence 11100 000112223333221 11100 01111122
Q ss_pred HHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecC
Q 005138 113 FEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDI 189 (712)
Q Consensus 113 ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~ 189 (712)
.|++++-||+|++ ++|+||||.+|+.+.. ..++.+.++++.+..|+||++|.|||+.+..+||++++|..
T Consensus 153 G~qR~LEIArALa~~P~lLLLDEPaAGln~~e------~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~- 225 (250)
T COG0411 153 GQQRRLEIARALATQPKLLLLDEPAAGLNPEE------TEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNY- 225 (250)
T ss_pred hHhHHHHHHHHHhcCCCEEEecCccCCCCHHH------HHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccC-
Confidence 3999999999999 9999999999999988 99999999999887789999999999999999999999999
Q ss_pred CeEEEecCcccccCCccchh
Q 005138 190 QKIWDSVPKPQAHMETPLSE 209 (712)
Q Consensus 190 G~I~~~g~~~e~~~~~~l~d 209 (712)
|+++++|+|+++..++...+
T Consensus 226 G~~IAeG~P~eV~~dp~Vie 245 (250)
T COG0411 226 GEVIAEGTPEEVRNNPRVIE 245 (250)
T ss_pred CcCcccCCHHHHhcCHHhHH
Confidence 99999999999987765433
No 19
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.94 E-value=4.3e-27 Score=252.26 Aligned_cols=178 Identities=11% Similarity=0.148 Sum_probs=137.5
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-e----
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-I---- 81 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i---- 81 (712)
.+|++.|+++.|+ ..+++++++++..|+ +++|+||||||||||+++|+|+. +|++|++...+. +
T Consensus 6 ~~i~i~~l~k~~~~~~~l~~vsl~i~~Ge------i~gllGpNGaGKSTLl~~l~Gl~----~p~~G~v~i~G~~~~~~~ 75 (306)
T PRK13537 6 APIDFRNVEKRYGDKLVVDGLSFHVQRGE------CFGLLGPNGAGKTTTLRMLLGLT----HPDAGSISLCGEPVPSRA 75 (306)
T ss_pred ceEEEEeEEEEECCeEEEecceEEEeCCc------EEEEECCCCCCHHHHHHHHhcCC----CCCceEEEECCEecccch
Confidence 4799999999995 458999999999999 99999999999999999999999 899998543211 0
Q ss_pred -eeccccC-------CCccchhcc-------ccCCCcc--------------------cccchhhHHHHHHHHHHHHHH-
Q 005138 82 -WMARCAG-------IEPCTLIMD-------LEGTDGR--------------------ERGEDDTAFEKQSALFALAVS- 125 (712)
Q Consensus 82 -~~~~~~~-------~~~~~~v~d-------~~g~~~~--------------------~r~~~~~~ferQrv~~A~Ala- 125 (712)
.....++ ..+...+.+ ..|.+.. ......+..||||++||+|++
T Consensus 76 ~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~ 155 (306)
T PRK13537 76 RHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVN 155 (306)
T ss_pred HHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhC
Confidence 0011111 111111111 1111111 011122344999999999999
Q ss_pred --HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccccC
Q 005138 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (712)
Q Consensus 126 --~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~~ 203 (712)
++|||||||+|||+.. ++.+.+++.++.++ |+|||++||+++++...|++++++.+ |+++..|++.+...
T Consensus 156 ~P~lllLDEPt~gLD~~~------~~~l~~~l~~l~~~-g~till~sH~l~e~~~~~d~i~il~~-G~i~~~g~~~~l~~ 227 (306)
T PRK13537 156 DPDVLVLDEPTTGLDPQA------RHLMWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVIEE-GRKIAEGAPHALIE 227 (306)
T ss_pred CCCEEEEeCCCcCCCHHH------HHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEEC-CEEEEECCHHHHHh
Confidence 9999999999999999 99999999999754 99999999999999999999999999 99999999876643
No 20
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=4.2e-27 Score=257.01 Aligned_cols=180 Identities=15% Similarity=0.131 Sum_probs=139.6
Q ss_pred ccEEEEeeeeee-c-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee---
Q 005138 8 CSTQLIDGDGTF-N-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW--- 82 (712)
Q Consensus 8 ~~I~l~~l~k~y-~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~--- 82 (712)
.+|++.|+++.| + ..+|++++++++.|+ +++|+|||||||||||++|+|+. +|++|++...+..+
T Consensus 2 ~~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge------~~~llG~sGsGKSTLLr~iaGl~----~p~~G~I~~~g~~i~~~ 71 (356)
T PRK11650 2 AGLKLQAVRKSYDGKTQVIKGIDLDVADGE------FIVLVGPSGCGKSTLLRMVAGLE----RITSGEIWIGGRVVNEL 71 (356)
T ss_pred CEEEEEeEEEEeCCCCEEEeeeeEEEcCCC------EEEEECCCCCcHHHHHHHHHCCC----CCCceEEEECCEECCCC
Confidence 369999999999 4 357999999999999 99999999999999999999999 89999854322110
Q ss_pred ---------eccccCCCccchhcccc-------CCCccc--------------------ccchhhHHHHHHHHHHHHHH-
Q 005138 83 ---------MARCAGIEPCTLIMDLE-------GTDGRE--------------------RGEDDTAFEKQSALFALAVS- 125 (712)
Q Consensus 83 ---------~~~~~~~~~~~~v~d~~-------g~~~~~--------------------r~~~~~~ferQrv~~A~Ala- 125 (712)
+.......+.+.+.+.. +.+..+ .....+..|+||++||+|++
T Consensus 72 ~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~ 151 (356)
T PRK11650 72 EPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVR 151 (356)
T ss_pred CHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 00111112222222211 111100 01122344999999999999
Q ss_pred --HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccccC
Q 005138 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (712)
Q Consensus 126 --~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~~ 203 (712)
++||||||+++||+.. +..+.+.++++.++.|+|+|+||||++++..+||++++|.+ |+++..|++.+++.
T Consensus 152 ~P~llLLDEP~s~LD~~~------r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~-G~i~~~g~~~~~~~ 224 (356)
T PRK11650 152 EPAVFLFDEPLSNLDAKL------RVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNG-GVAEQIGTPVEVYE 224 (356)
T ss_pred CCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeC-CEEEEECCHHHHHh
Confidence 9999999999999998 99999999999876699999999999999999999999988 99999999888765
Q ss_pred C
Q 005138 204 E 204 (712)
Q Consensus 204 ~ 204 (712)
+
T Consensus 225 ~ 225 (356)
T PRK11650 225 K 225 (356)
T ss_pred C
Confidence 4
No 21
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.94 E-value=5.8e-27 Score=254.40 Aligned_cols=179 Identities=11% Similarity=0.100 Sum_probs=138.2
Q ss_pred cccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee--
Q 005138 7 CCSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW-- 82 (712)
Q Consensus 7 ~~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~-- 82 (712)
+.+|++.|+++.|+ ..+|++++|+|..|+ ++||+|||||||||||++|+|+. +|++|++...+. +.
T Consensus 39 ~~~i~i~nl~k~y~~~~~l~~is~~i~~Ge------i~gLlGpNGaGKSTLl~~L~Gl~----~p~~G~i~i~G~~~~~~ 108 (340)
T PRK13536 39 TVAIDLAGVSKSYGDKAVVNGLSFTVASGE------CFGLLGPNGAGKSTIARMILGMT----SPDAGKITVLGVPVPAR 108 (340)
T ss_pred ceeEEEEEEEEEECCEEEEeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHHcCC----CCCceEEEECCEECCcc
Confidence 45799999999995 457999999999999 99999999999999999999999 899998543211 00
Q ss_pred ---eccccC-------CCccchhccc-------------------------cCCCc--ccccchhhHHHHHHHHHHHHHH
Q 005138 83 ---MARCAG-------IEPCTLIMDL-------------------------EGTDG--RERGEDDTAFEKQSALFALAVS 125 (712)
Q Consensus 83 ---~~~~~~-------~~~~~~v~d~-------------------------~g~~~--~~r~~~~~~ferQrv~~A~Ala 125 (712)
....++ ..+...+.+. .|+.. .......+.+|+||+.||+|++
T Consensus 109 ~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~ 188 (340)
T PRK13536 109 ARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALI 188 (340)
T ss_pred hHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHh
Confidence 001111 1111111111 11110 0111223445999999999999
Q ss_pred ---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCccccc
Q 005138 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (712)
Q Consensus 126 ---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~ 202 (712)
++|||||||+|||+.. +..+.+++.++.+. |+|||++||+++++..+|++++++.+ |+++..|++.+..
T Consensus 189 ~~P~lLiLDEPt~gLD~~~------r~~l~~~l~~l~~~-g~tilisSH~l~e~~~~~d~i~il~~-G~i~~~g~~~~l~ 260 (340)
T PRK13536 189 NDPQLLILDEPTTGLDPHA------RHLIWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVLEA-GRKIAEGRPHALI 260 (340)
T ss_pred cCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEEC-CEEEEEcCHHHHH
Confidence 9999999999999999 99999999999764 99999999999999999999999999 9999999987764
Q ss_pred C
Q 005138 203 M 203 (712)
Q Consensus 203 ~ 203 (712)
.
T Consensus 261 ~ 261 (340)
T PRK13536 261 D 261 (340)
T ss_pred h
Confidence 3
No 22
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=4.7e-27 Score=241.81 Aligned_cols=180 Identities=17% Similarity=0.156 Sum_probs=140.9
Q ss_pred ccEEEEeeeeeec-c-ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCe----
Q 005138 8 CSTQLIDGDGTFN-V-SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGI---- 81 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~-~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi---- 81 (712)
+++.+.+++..|. . .+++++++++..|+ +++|+|+||||||||+++|+|+. .|++|++...+-.
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge------~~~i~G~nGsGKSTL~~~l~GLl----~p~~G~v~~~g~~~~~~ 71 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGE------RVLLIGPNGSGKSTLLKLLNGLL----KPTSGEVLVDGLDTSSE 71 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCC------EEEEECCCCCCHHHHHHHHcCcC----cCCCCEEEECCeeccch
Confidence 4789999999994 3 57999999999999 99999999999999999999999 8999996322211
Q ss_pred ----eeccccCC---------------CccchhccccCCCcccc--------------------cchhhHHHHHHHHHHH
Q 005138 82 ----WMARCAGI---------------EPCTLIMDLEGTDGRER--------------------GEDDTAFEKQSALFAL 122 (712)
Q Consensus 82 ----~~~~~~~~---------------~~~~~v~d~~g~~~~~r--------------------~~~~~~ferQrv~~A~ 122 (712)
.+.+.+|+ +...+.+...|.+..+. ....+..|+||++||.
T Consensus 72 ~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~ 151 (235)
T COG1122 72 KSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAG 151 (235)
T ss_pred hhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhH
Confidence 01111221 11111222233332210 0112333999999999
Q ss_pred HHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcc
Q 005138 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (712)
Q Consensus 123 Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~ 199 (712)
+|+ ++|||||||++|||.. .+.+++.+.++.++.|.|+|++|||++.+...|++++++.+ |+++.+|+|.
T Consensus 152 vLa~~P~iliLDEPta~LD~~~------~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~-G~i~~~g~p~ 224 (235)
T COG1122 152 VLAMGPEILLLDEPTAGLDPKG------RRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDD-GKILADGDPA 224 (235)
T ss_pred HHHcCCCEEEEcCCCCCCCHHH------HHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEEC-CEEeecCCHH
Confidence 999 9999999999999999 99999999999887789999999999999999999999999 9999999987
Q ss_pred cccCC
Q 005138 200 QAHME 204 (712)
Q Consensus 200 e~~~~ 204 (712)
+++.+
T Consensus 225 ~i~~~ 229 (235)
T COG1122 225 EIFND 229 (235)
T ss_pred HHhhh
Confidence 76654
No 23
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.94 E-value=7.6e-27 Score=254.46 Aligned_cols=181 Identities=15% Similarity=0.159 Sum_probs=140.6
Q ss_pred cccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-----
Q 005138 7 CCSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG----- 80 (712)
Q Consensus 7 ~~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g----- 80 (712)
+++|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+.
T Consensus 4 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge------~~~llGpsGsGKSTLLr~IaGl~----~p~~G~I~~~g~~i~~~ 73 (351)
T PRK11432 4 KNFVVLKNITKRFGSNTVIDNLNLTIKQGT------MVTLLGPSGCGKTTVLRLVAGLE----KPTEGQIFIDGEDVTHR 73 (351)
T ss_pred CcEEEEEeEEEEECCeEEEeeeEEEEcCCC------EEEEECCCCCcHHHHHHHHHCCC----CCCceEEEECCEECCCC
Confidence 45799999999995 346999999999999 99999999999999999999999 899998543221
Q ss_pred ------e-eeccccCCCccchhcccc-------CCCccc--------------------ccchhhHHHHHHHHHHHHHH-
Q 005138 81 ------I-WMARCAGIEPCTLIMDLE-------GTDGRE--------------------RGEDDTAFEKQSALFALAVS- 125 (712)
Q Consensus 81 ------i-~~~~~~~~~~~~~v~d~~-------g~~~~~--------------------r~~~~~~ferQrv~~A~Ala- 125 (712)
+ .+.......+.+.+.++. +.+..+ .....+..|+||++||+|++
T Consensus 74 ~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~ 153 (351)
T PRK11432 74 SIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALIL 153 (351)
T ss_pred CHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 1 001111112222222211 111110 11222344999999999999
Q ss_pred --HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccccC
Q 005138 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (712)
Q Consensus 126 --~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~~ 203 (712)
++||||||+++||+.. +..+.+.++++.++.|+|+|+||||.+++..+||++++|.+ |++...|++.+++.
T Consensus 154 ~P~lLLLDEP~s~LD~~~------r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~-G~i~~~g~~~~~~~ 226 (351)
T PRK11432 154 KPKVLLFDEPLSNLDANL------RRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNK-GKIMQIGSPQELYR 226 (351)
T ss_pred CCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEEC-CEEEEEcCHHHHHh
Confidence 9999999999999998 99999999999876799999999999999999999999998 99999999887765
Q ss_pred C
Q 005138 204 E 204 (712)
Q Consensus 204 ~ 204 (712)
.
T Consensus 227 ~ 227 (351)
T PRK11432 227 Q 227 (351)
T ss_pred C
Confidence 4
No 24
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.94 E-value=6.8e-27 Score=255.12 Aligned_cols=181 Identities=14% Similarity=0.109 Sum_probs=140.8
Q ss_pred cccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee---
Q 005138 7 CCSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW--- 82 (712)
Q Consensus 7 ~~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~--- 82 (712)
|.+|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+..+
T Consensus 2 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge------~~~l~GpsGsGKSTLLr~iaGl~----~p~~G~I~i~g~~~~~~ 71 (353)
T TIGR03265 2 SPYLSIDNIRKRFGAFTALKDISLSVKKGE------FVCLLGPSGCGKTTLLRIIAGLE----RQTAGTIYQGGRDITRL 71 (353)
T ss_pred CcEEEEEEEEEEeCCeEEEEeeEEEEcCCC------EEEEECCCCCCHHHHHHHHHCCC----CCCceEEEECCEECCCC
Confidence 45799999999995 346999999999999 99999999999999999999999 89999854322111
Q ss_pred ---------eccccCCCccchhcccc-------CCCcc--------------------cccchhhHHHHHHHHHHHHHH-
Q 005138 83 ---------MARCAGIEPCTLIMDLE-------GTDGR--------------------ERGEDDTAFEKQSALFALAVS- 125 (712)
Q Consensus 83 ---------~~~~~~~~~~~~v~d~~-------g~~~~--------------------~r~~~~~~ferQrv~~A~Ala- 125 (712)
+.......+.+.+.++. +.+.. ......+..|+||+++|+|++
T Consensus 72 ~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~ 151 (353)
T TIGR03265 72 PPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALAT 151 (353)
T ss_pred CHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 00111112222222211 11100 111223445999999999999
Q ss_pred --HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccccC
Q 005138 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (712)
Q Consensus 126 --~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~~ 203 (712)
++||||||+++||+.. +..+.+.++++.++.|+|+|+||||++++..+|+++++|.+ |+++..|++.+++.
T Consensus 152 ~P~llLLDEP~s~LD~~~------r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~-G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 152 SPGLLLLDEPLSALDARV------REHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNH-GVIEQVGTPQEIYR 224 (353)
T ss_pred CCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEEC-CEEEEEcCHHHHHh
Confidence 9999999999999998 99999999999876799999999999999999999999999 99999999888775
Q ss_pred C
Q 005138 204 E 204 (712)
Q Consensus 204 ~ 204 (712)
.
T Consensus 225 ~ 225 (353)
T TIGR03265 225 H 225 (353)
T ss_pred C
Confidence 4
No 25
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.94 E-value=1.3e-26 Score=235.29 Aligned_cols=166 Identities=22% Similarity=0.302 Sum_probs=128.3
Q ss_pred cEEEEeeeeeecc-----ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-e-
Q 005138 9 STQLIDGDGTFNV-----SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-I- 81 (712)
Q Consensus 9 ~I~l~~l~k~y~~-----~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i- 81 (712)
++++.++.|.|.. .+|++++++|+.|+ +|+|+||+|||||||||+|.|+. .|++|.+...+- +
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge------~vaI~GpSGSGKSTLLniig~ld----~pt~G~v~i~g~d~~ 70 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGE------FVAIVGPSGSGKSTLLNLLGGLD----KPTSGEVLINGKDLT 70 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCC------EEEEECCCCCCHHHHHHHHhccc----CCCCceEEECCEEcC
Confidence 4789999999942 47999999999999 99999999999999999999999 899998433220 0
Q ss_pred ---------eeccccCC--------------Cccchhcccc------------------CCCcc---cccchhhHHHHHH
Q 005138 82 ---------WMARCAGI--------------EPCTLIMDLE------------------GTDGR---ERGEDDTAFEKQS 117 (712)
Q Consensus 82 ---------~~~~~~~~--------------~~~~~v~d~~------------------g~~~~---~r~~~~~~ferQr 117 (712)
+....+|+ +|..+.+... |+... ......+..||||
T Consensus 71 ~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQR 150 (226)
T COG1136 71 KLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQR 150 (226)
T ss_pred cCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHH
Confidence 00111111 1111111111 22211 1133456679999
Q ss_pred HHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeE
Q 005138 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (712)
Q Consensus 118 v~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I 192 (712)
|++|||++ ++|+.||||.+||..+ .+.|++++.++.++.|+|+||||||...+. .|++++.+.+ |++
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t------~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~d-G~~ 220 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKT------AKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKD-GKI 220 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHH------HHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeC-Cee
Confidence 99999999 9999999999999999 999999999999888999999999999877 5899999999 884
No 26
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.7e-26 Score=227.92 Aligned_cols=193 Identities=16% Similarity=0.188 Sum_probs=151.2
Q ss_pred cEEEEeeeeee-ccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC---eee-
Q 005138 9 STQLIDGDGTF-NVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG---IWM- 83 (712)
Q Consensus 9 ~I~l~~l~k~y-~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g---i~~- 83 (712)
||+..|++.+. +...++++++++.+|+ +++|+|||||||||||+.|+|-. .|++|+....+- .|-
T Consensus 1 mi~a~nls~~~~Gr~ll~~vsl~~~pGe------v~ailGPNGAGKSTlLk~LsGel----~p~~G~v~~~g~~l~~~~~ 70 (259)
T COG4559 1 MIRAENLSYSLAGRRLLDGVSLDLRPGE------VLAILGPNGAGKSTLLKALSGEL----SPDSGEVTLNGVPLNSWPP 70 (259)
T ss_pred CeeeeeeEEEeecceeccCcceeccCCc------EEEEECCCCccHHHHHHHhhCcc----CCCCCeEeeCCcChhhCCH
Confidence 58899999988 5667999999999999 99999999999999999999988 899998432211 111
Q ss_pred ---ccccC-------CCccchhccccCCC------cccccch-----------------------hhHHHHHHHHHHHHH
Q 005138 84 ---ARCAG-------IEPCTLIMDLEGTD------GRERGED-----------------------DTAFEKQSALFALAV 124 (712)
Q Consensus 84 ---~~~~~-------~~~~~~v~d~~g~~------~~~r~~~-----------------------~~~ferQrv~~A~Al 124 (712)
++..+ ..-.+.|.++..+. +++..++ .+..|+|||.||+.|
T Consensus 71 ~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvL 150 (259)
T COG4559 71 EELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVL 150 (259)
T ss_pred HHHHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHH
Confidence 11111 11122233332111 1111111 122399999999999
Q ss_pred H---------HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEe
Q 005138 125 S---------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (712)
Q Consensus 125 a---------~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~ 195 (712)
+ .+|+|||||+.||... +..++++.+++.++ |..++.|-||++.+..+||++++|.+ |++++.
T Consensus 151 aQl~~~v~~~r~L~LDEPtsaLDi~H------Q~~tl~laR~la~~-g~~V~~VLHDLNLAA~YaDrivll~~-Grv~a~ 222 (259)
T COG4559 151 AQLWPPVPSGRWLFLDEPTSALDIAH------QHHTLRLARQLARE-GGAVLAVLHDLNLAAQYADRIVLLHQ-GRVIAS 222 (259)
T ss_pred HHccCCCCCCceEEecCCccccchHH------HHHHHHHHHHHHhc-CCcEEEEEccchHHHHhhheeeeeeC-CeEeec
Confidence 9 4889999999999999 99999999999886 89999999999999999999999999 999999
Q ss_pred cCcccccCCccchhhhcccccccc
Q 005138 196 VPKPQAHMETPLSEFFNVEVVALS 219 (712)
Q Consensus 196 g~~~e~~~~~~l~d~f~~~~~~l~ 219 (712)
|+|.+++....++..|+.++....
T Consensus 223 g~p~~vlt~Etl~~vyg~~~~V~~ 246 (259)
T COG4559 223 GSPQDVLTDETLERVYGADIRVGR 246 (259)
T ss_pred CCHHHhcCHHHHHHHhCCceeeee
Confidence 999999999999999998765443
No 27
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.93 E-value=1.6e-26 Score=251.01 Aligned_cols=178 Identities=11% Similarity=0.144 Sum_probs=137.7
Q ss_pred cEEEEeeeeeec-----cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee
Q 005138 9 STQLIDGDGTFN-----VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW 82 (712)
Q Consensus 9 ~I~l~~l~k~y~-----~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~ 82 (712)
||++.|+++.|+ ..+|++++|+++.|+ +++|+|||||||||||++|+|+. +|++|++...+. +.
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Ge------i~gIiG~sGaGKSTLlr~I~gl~----~p~~G~I~i~G~~i~ 70 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQ------IYGVIGASGAGKSTLIRCVNLLE----RPTSGSVIVDGQDLT 70 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHhcCC----CCCceEEEECCEECC
Confidence 489999999994 247999999999999 99999999999999999999999 899998543221 00
Q ss_pred ---------eccccCC-------Cccchhcc-------ccCCCcc--------------------cccchhhHHHHHHHH
Q 005138 83 ---------MARCAGI-------EPCTLIMD-------LEGTDGR--------------------ERGEDDTAFEKQSAL 119 (712)
Q Consensus 83 ---------~~~~~~~-------~~~~~v~d-------~~g~~~~--------------------~r~~~~~~ferQrv~ 119 (712)
..+.+++ .+...+.+ ..+.+.. ......+..|+||++
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVA 150 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHH
Confidence 0111111 11111111 1111110 011223445999999
Q ss_pred HHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEec
Q 005138 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 120 ~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g 196 (712)
||+|++ ++||+||||++||+.. ...++++++++.++.|.|||+|||+++.+...|+++++|.+ |+++..|
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t------~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~-G~iv~~g 223 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPAT------TQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISN-GELIEQG 223 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEEc
Confidence 999999 9999999999999999 99999999999876699999999999999999999999998 9999999
Q ss_pred CcccccC
Q 005138 197 PKPQAHM 203 (712)
Q Consensus 197 ~~~e~~~ 203 (712)
++.+++.
T Consensus 224 ~~~~v~~ 230 (343)
T TIGR02314 224 TVSEIFS 230 (343)
T ss_pred CHHHHHc
Confidence 9877664
No 28
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=1.4e-26 Score=232.30 Aligned_cols=184 Identities=16% Similarity=0.162 Sum_probs=144.2
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC-------
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~------- 79 (712)
+|+++.|++..|+ .++|++|+++++.|+ |++|+||||+|||||||+|+|+. ++.+|++...+
T Consensus 2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~Ge------iv~llG~NGaGKTTlLkti~Gl~----~~~~G~I~~~G~dit~~p 71 (237)
T COG0410 2 PMLEVENLSAGYGKIQALRGVSLEVERGE------IVALLGRNGAGKTTLLKTIMGLV----RPRSGRIIFDGEDITGLP 71 (237)
T ss_pred CceeEEeEeecccceeEEeeeeeEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCeeEEECCeecCCCC
Confidence 5799999999995 568999999999999 99999999999999999999999 88899854221
Q ss_pred -------Cee-eccccCCCccchhccccC---------------------CCc------ccccchhhHHHHHHHHHHHHH
Q 005138 80 -------GIW-MARCAGIEPCTLIMDLEG---------------------TDG------RERGEDDTAFEKQSALFALAV 124 (712)
Q Consensus 80 -------gi~-~~~~~~~~~~~~v~d~~g---------------------~~~------~~r~~~~~~ferQrv~~A~Al 124 (712)
|+- ........+.+.|.++.- +++ ..+++..+..|+|.+++|+||
T Consensus 72 ~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRAL 151 (237)
T COG0410 72 PHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARAL 151 (237)
T ss_pred HHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHH
Confidence 111 110001122233322211 011 011223344599999999999
Q ss_pred H---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccc
Q 005138 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (712)
Q Consensus 125 a---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~ 201 (712)
+ ++|+||||+.||-|.- .++|++.++++.++.|+|||+|.++...+..++|+.++|.. |+|+.+|+..+.
T Consensus 152 m~~PklLLLDEPs~GLaP~i------v~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~-Griv~~G~~~eL 224 (237)
T COG0410 152 MSRPKLLLLDEPSEGLAPKI------VEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLEN-GRIVLSGTAAEL 224 (237)
T ss_pred hcCCCEEEecCCccCcCHHH------HHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeC-CEEEEecCHHHH
Confidence 9 9999999999999987 99999999999977789999999999999999999999999 999999998888
Q ss_pred cCCccch
Q 005138 202 HMETPLS 208 (712)
Q Consensus 202 ~~~~~l~ 208 (712)
..+..+.
T Consensus 225 ~~~~~v~ 231 (237)
T COG0410 225 LADPDVR 231 (237)
T ss_pred hcCHHHH
Confidence 7665443
No 29
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.93 E-value=1.7e-26 Score=253.61 Aligned_cols=182 Identities=16% Similarity=0.155 Sum_probs=140.9
Q ss_pred CcccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee--
Q 005138 6 ECCSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW-- 82 (712)
Q Consensus 6 ~~~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~-- 82 (712)
++++|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+..+
T Consensus 11 ~~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge------~~~LlGpsGsGKSTLLr~IaGl~----~p~~G~I~~~g~~i~~ 80 (375)
T PRK09452 11 LSPLVELRGISKSFDGKEVISNLDLTINNGE------FLTLLGPSGCGKTTVLRLIAGFE----TPDSGRIMLDGQDITH 80 (375)
T ss_pred CCceEEEEEEEEEECCeEEEeeeEEEEeCCC------EEEEECCCCCcHHHHHHHHhCCC----CCCceEEEECCEECCC
Confidence 455799999999995 356999999999999 99999999999999999999999 89999854322111
Q ss_pred ----------eccccCCCccchhcccc-------CCCccc--------------------ccchhhHHHHHHHHHHHHHH
Q 005138 83 ----------MARCAGIEPCTLIMDLE-------GTDGRE--------------------RGEDDTAFEKQSALFALAVS 125 (712)
Q Consensus 83 ----------~~~~~~~~~~~~v~d~~-------g~~~~~--------------------r~~~~~~ferQrv~~A~Ala 125 (712)
+.......+...+.++. +.+..+ .....+..|+||++||+||+
T Consensus 81 ~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~ 160 (375)
T PRK09452 81 VPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVV 160 (375)
T ss_pred CCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHh
Confidence 00111112222222221 111100 01122344999999999999
Q ss_pred ---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCccccc
Q 005138 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (712)
Q Consensus 126 ---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~ 202 (712)
++||||||+++||+.. +..+.+.++++.++.|+|+|+||||.+++..++|++++|.+ |+|...|++.+++
T Consensus 161 ~~P~llLLDEP~s~LD~~~------r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~-G~i~~~g~~~~i~ 233 (375)
T PRK09452 161 NKPKVLLLDESLSALDYKL------RKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRD-GRIEQDGTPREIY 233 (375)
T ss_pred cCCCEEEEeCCCCcCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEEcCHHHHH
Confidence 9999999999999998 99999999999876799999999999999989999999998 9999999988776
Q ss_pred CC
Q 005138 203 ME 204 (712)
Q Consensus 203 ~~ 204 (712)
..
T Consensus 234 ~~ 235 (375)
T PRK09452 234 EE 235 (375)
T ss_pred hC
Confidence 54
No 30
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.93 E-value=1.9e-26 Score=254.83 Aligned_cols=190 Identities=18% Similarity=0.192 Sum_probs=146.8
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee---
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW--- 82 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~--- 82 (712)
++|++.|+++.|+ ..++++++|++..|+ +++|+||||||||||||+|+|+. +|++|++...+. +.
T Consensus 2 ~~L~~~nls~~y~~~~vL~~vs~~i~~Ge------iv~liGpNGaGKSTLLk~LaGll----~p~sG~I~l~G~~i~~~~ 71 (402)
T PRK09536 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGS------LVGLVGPNGAGKTTLLRAINGTL----TPTAGTVLVAGDDVEALS 71 (402)
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEECCCC------EEEEECCCCchHHHHHHHHhcCC----CCCCcEEEECCEEcCcCC
Confidence 4799999999995 457999999999999 99999999999999999999999 899998543221 00
Q ss_pred ---eccccC-------CCccchhcccc-----------------------------CCCc--ccccchhhHHHHHHHHHH
Q 005138 83 ---MARCAG-------IEPCTLIMDLE-----------------------------GTDG--RERGEDDTAFEKQSALFA 121 (712)
Q Consensus 83 ---~~~~~~-------~~~~~~v~d~~-----------------------------g~~~--~~r~~~~~~ferQrv~~A 121 (712)
+.+.++ ......+.+.. |+.. .......+..||||++||
T Consensus 72 ~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IA 151 (402)
T PRK09536 72 ARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLA 151 (402)
T ss_pred HHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHH
Confidence 001111 11111111111 0000 000011233499999999
Q ss_pred HHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCc
Q 005138 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (712)
Q Consensus 122 ~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~ 198 (712)
+||+ ++|||||||++||+.. +..++++++++.+ .|+|||++|||++.+...|++++++.+ |+++..|++
T Consensus 152 rAL~~~P~iLLLDEPtsgLD~~~------~~~l~~lL~~l~~-~g~TIIivsHdl~~~~~~adrii~l~~-G~iv~~G~~ 223 (402)
T PRK09536 152 RALAQATPVLLLDEPTASLDINH------QVRTLELVRRLVD-DGKTAVAAIHDLDLAARYCDELVLLAD-GRVRAAGPP 223 (402)
T ss_pred HHHHcCCCEEEEECCcccCCHHH------HHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCCEEEEEEC-CEEEEecCH
Confidence 9999 9999999999999998 9999999999986 489999999999999999999999998 999999999
Q ss_pred ccccCCccchhhhcccc
Q 005138 199 PQAHMETPLSEFFNVEV 215 (712)
Q Consensus 199 ~e~~~~~~l~d~f~~~~ 215 (712)
++++....+.+.|+...
T Consensus 224 ~ev~~~~~l~~~~~~~~ 240 (402)
T PRK09536 224 ADVLTADTLRAAFDART 240 (402)
T ss_pred HHHhCcHHHHHHhCCce
Confidence 88888778888887543
No 31
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.93 E-value=3e-26 Score=221.23 Aligned_cols=177 Identities=18% Similarity=0.159 Sum_probs=133.4
Q ss_pred cEEEEeeeeeeccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccccC
Q 005138 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG 88 (712)
Q Consensus 9 ~I~l~~l~k~y~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~~~ 88 (712)
||.+.++...|+... -.+++++..|+ +|+|+||+|||||||||+|+|.. .|.+|++...+ ..+.....
T Consensus 1 ~l~L~~V~~~y~~~~-~~fdl~v~~ge------~vAi~GpSGaGKSTLLnLIAGF~----~P~~G~i~i~g-~d~t~~~P 68 (231)
T COG3840 1 MLALDDVRFSYGHLP-MRFDLTVPAGE------IVAILGPSGAGKSTLLNLIAGFE----TPASGEILING-VDHTASPP 68 (231)
T ss_pred CccccceEEeeCcce-EEEEEeecCCc------EEEEECCCCccHHHHHHHHHhcc----CCCCceEEEcC-eecCcCCc
Confidence 467888999996422 35677778888 99999999999999999999999 79999853322 11111000
Q ss_pred ---------CCcc----chhccccC--CCcccc-------------------------cchhhHHHHHHHHHHHHHH---
Q 005138 89 ---------IEPC----TLIMDLEG--TDGRER-------------------------GEDDTAFEKQSALFALAVS--- 125 (712)
Q Consensus 89 ---------~~~~----~~v~d~~g--~~~~~r-------------------------~~~~~~ferQrv~~A~Ala--- 125 (712)
-+++ ..|..+.| ..+..+ .+..+..|||||++|+++.
T Consensus 69 ~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~ 148 (231)
T COG3840 69 AERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQ 148 (231)
T ss_pred ccCChhhhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccC
Confidence 0111 12222222 222111 0112334999999999999
Q ss_pred HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccccCC
Q 005138 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHME 204 (712)
Q Consensus 126 ~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~~~ 204 (712)
.||+||||++.|||.- +.++..++.+++.+++.|++||||.++.+..++++++++.+ |+|...|+..+.+..
T Consensus 149 PilLLDEPFsALdP~L------R~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~-Gri~~~g~~~~~~~~ 220 (231)
T COG3840 149 PILLLDEPFSALDPAL------RAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDN-GRIAAQGSTQELLSG 220 (231)
T ss_pred CeEEecCchhhcCHHH------HHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeC-CEEEeeccHHHHhcc
Confidence 9999999999999986 99999999999999999999999999999999999999998 999999988776643
No 32
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.93 E-value=3.4e-26 Score=250.20 Aligned_cols=182 Identities=13% Similarity=0.134 Sum_probs=140.2
Q ss_pred CcccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCC--CeeeccCCee
Q 005138 6 ECCSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFK--GRSQTTKGIW 82 (712)
Q Consensus 6 ~~~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~s--G~~~~t~gi~ 82 (712)
.|..|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++ |++...+..+
T Consensus 2 ~~~~l~~~~l~~~~~~~~~l~~vsl~i~~Ge------~~~llGpsGsGKSTLLr~iaGl~----~p~~~~G~i~~~g~~~ 71 (362)
T TIGR03258 2 ACGGIRIDHLRVAYGANTVLDDLSLEIEAGE------LLALIGKSGCGKTTLLRAIAGFV----KAAGLTGRIAIADRDL 71 (362)
T ss_pred CceEEEEEEEEEEECCeEEEeeeEEEECCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCCCEEEEECCEEC
Confidence 355799999999995 347999999999999 99999999999999999999999 8999 9854322110
Q ss_pred ------------eccccCCCccchhccc-------cCCCcc--------------------cccchhhHHHHHHHHHHHH
Q 005138 83 ------------MARCAGIEPCTLIMDL-------EGTDGR--------------------ERGEDDTAFEKQSALFALA 123 (712)
Q Consensus 83 ------------~~~~~~~~~~~~v~d~-------~g~~~~--------------------~r~~~~~~ferQrv~~A~A 123 (712)
+.......+...+.++ .+.+.. ......+..|+||+++|+|
T Consensus 72 ~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARA 151 (362)
T TIGR03258 72 THAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARA 151 (362)
T ss_pred CCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHH
Confidence 0001111112112111 111110 0112234459999999999
Q ss_pred HH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCC-CceEEEEecCCCCcccccccccceecCCeEEEecCcc
Q 005138 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPR-KTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (712)
Q Consensus 124 la---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~-g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~ 199 (712)
++ ++||||||+++||+.. +..+.+.+.++.++. |+|+|+||||++++..+|+++++|.+ |+++..|++.
T Consensus 152 L~~~P~llLLDEP~s~LD~~~------r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~-G~i~~~g~~~ 224 (362)
T TIGR03258 152 IAIEPDVLLLDEPLSALDANI------RANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKD-GRLAAHGEPQ 224 (362)
T ss_pred HhcCCCEEEEcCccccCCHHH------HHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 99 9999999999999998 999999999998765 89999999999999999999999998 9999999988
Q ss_pred cccCC
Q 005138 200 QAHME 204 (712)
Q Consensus 200 e~~~~ 204 (712)
+++..
T Consensus 225 ~~~~~ 229 (362)
T TIGR03258 225 ALYDA 229 (362)
T ss_pred HHHhC
Confidence 87754
No 33
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.93 E-value=3.3e-26 Score=251.26 Aligned_cols=179 Identities=13% Similarity=0.135 Sum_probs=137.6
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC------
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------ 80 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g------ 80 (712)
++|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+.
T Consensus 2 ~~l~i~~l~~~~~~~~vl~~vsl~i~~Ge------~~~l~G~nGsGKSTLL~~iaGl~----~p~~G~I~~~g~~i~~~~ 71 (369)
T PRK11000 2 ASVTLRNVTKAYGDVVISKDINLDIHEGE------FVVFVGPSGCGKSTLLRMIAGLE----DITSGDLFIGEKRMNDVP 71 (369)
T ss_pred CEEEEEEEEEEeCCeEEEeeeEEEEcCCC------EEEEECCCCCcHHHHHHHHhCCC----CCCceEEEECCEECCCCC
Confidence 3699999999995 357999999999999 99999999999999999999999 899998543211
Q ss_pred -----e-eeccccCCCccchhcccc-------------------------CCCc--ccccchhhHHHHHHHHHHHHHH--
Q 005138 81 -----I-WMARCAGIEPCTLIMDLE-------------------------GTDG--RERGEDDTAFEKQSALFALAVS-- 125 (712)
Q Consensus 81 -----i-~~~~~~~~~~~~~v~d~~-------------------------g~~~--~~r~~~~~~ferQrv~~A~Ala-- 125 (712)
+ ++.......+...+.+.. |+.. .......+..|+||++||+|++
T Consensus 72 ~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~ 151 (369)
T PRK11000 72 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAE 151 (369)
T ss_pred HhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 1 011111111111111111 1110 0011223445999999999999
Q ss_pred -HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccccC
Q 005138 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (712)
Q Consensus 126 -~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~~ 203 (712)
++|||||||++||+.. +..+.+.+.++.++.|+|+|+||||++++...|++++++.+ |++...|++.+++.
T Consensus 152 P~lLLLDEPts~LD~~~------~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~-G~i~~~g~~~~i~~ 223 (369)
T PRK11000 152 PSVFLLDEPLSNLDAAL------RVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDA-GRVAQVGKPLELYH 223 (369)
T ss_pred CCEEEEeCCcccCCHHH------HHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEEcCHHHHHh
Confidence 9999999999999998 99999999998765689999999999999889999999998 99999999877764
No 34
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=5.6e-26 Score=234.86 Aligned_cols=178 Identities=15% Similarity=0.170 Sum_probs=134.0
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC--------
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~-------- 79 (712)
+|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~~ 71 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGE------LVALLGPSGSGKTTLLRLIAGLE----RPDSGTILFGGEDATDVPV 71 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEECCcCCc
Confidence 599999999995 457999999999999 99999999999999999999999 89999853221
Q ss_pred ---Ce-eeccccCCCccchhcccc-------CC----Ccc--------------------cccchhhHHHHHHHHHHHHH
Q 005138 80 ---GI-WMARCAGIEPCTLIMDLE-------GT----DGR--------------------ERGEDDTAFEKQSALFALAV 124 (712)
Q Consensus 80 ---gi-~~~~~~~~~~~~~v~d~~-------g~----~~~--------------------~r~~~~~~ferQrv~~A~Al 124 (712)
++ ++.......+...+.+.. +. ... ......+..|+||++||+|+
T Consensus 72 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al 151 (239)
T cd03296 72 QERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARAL 151 (239)
T ss_pred cccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHH
Confidence 11 111110111111111111 00 000 00011233499999999999
Q ss_pred H---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccc
Q 005138 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (712)
Q Consensus 125 a---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~ 201 (712)
+ ++|||||||++||+.. .+.+.+.+.++.++.|+|||+||||++.+...|++++++.+ |+++..|++++.
T Consensus 152 ~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~-G~i~~~~~~~~~ 224 (239)
T cd03296 152 AVEPKVLLLDEPFGALDAKV------RKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNK-GRIEQVGTPDEV 224 (239)
T ss_pred hcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC-CeEEEecCHHHH
Confidence 9 9999999999999998 99999999998765589999999999988888999999988 999999887665
Q ss_pred cC
Q 005138 202 HM 203 (712)
Q Consensus 202 ~~ 203 (712)
+.
T Consensus 225 ~~ 226 (239)
T cd03296 225 YD 226 (239)
T ss_pred hc
Confidence 43
No 35
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.93 E-value=3.9e-26 Score=249.17 Aligned_cols=179 Identities=17% Similarity=0.191 Sum_probs=138.2
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-------
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------- 80 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g------- 80 (712)
+|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+.
T Consensus 2 ~L~i~~l~~~~~~~~~l~~isl~i~~Ge------~~~llGpsGsGKSTLLr~IaGl~----~p~~G~I~i~g~~i~~~~~ 71 (353)
T PRK10851 2 SIEIANIKKSFGRTQVLNDISLDIPSGQ------MVALLGPSGSGKTTLLRIIAGLE----HQTSGHIRFHGTDVSRLHA 71 (353)
T ss_pred EEEEEEEEEEeCCeEEEEEeEEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCCCCH
Confidence 599999999995 357999999999999 99999999999999999999999 899998533221
Q ss_pred ----e-eeccccCCCccchhccccCC-----------Ccc--------------------cccchhhHHHHHHHHHHHHH
Q 005138 81 ----I-WMARCAGIEPCTLIMDLEGT-----------DGR--------------------ERGEDDTAFEKQSALFALAV 124 (712)
Q Consensus 81 ----i-~~~~~~~~~~~~~v~d~~g~-----------~~~--------------------~r~~~~~~ferQrv~~A~Al 124 (712)
+ ++.......+...+.+.... +.. ......+..|+||++||+|+
T Consensus 72 ~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL 151 (353)
T PRK10851 72 RDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARAL 151 (353)
T ss_pred HHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 1 00111111121122111110 000 00111233499999999999
Q ss_pred H---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccc
Q 005138 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (712)
Q Consensus 125 a---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~ 201 (712)
+ ++||+|||+++||+.. +..+.+.+.++.++.|+|+|+||||++++...|+++++|.+ |+++..|++.++
T Consensus 152 ~~~P~llLLDEP~s~LD~~~------r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~-G~i~~~g~~~~i 224 (353)
T PRK10851 152 AVEPQILLLDEPFGALDAQV------RKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQ-GNIEQAGTPDQV 224 (353)
T ss_pred hcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEEcCHHHH
Confidence 9 9999999999999998 99999999999876689999999999999999999999998 999999998887
Q ss_pred cCC
Q 005138 202 HME 204 (712)
Q Consensus 202 ~~~ 204 (712)
+.+
T Consensus 225 ~~~ 227 (353)
T PRK10851 225 WRE 227 (353)
T ss_pred HhC
Confidence 654
No 36
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.93 E-value=2.9e-26 Score=222.93 Aligned_cols=171 Identities=17% Similarity=0.234 Sum_probs=136.0
Q ss_pred cEEEEeeeeeec--cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC-------
Q 005138 9 STQLIDGDGTFN--VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (712)
Q Consensus 9 ~I~l~~l~k~y~--~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~------- 79 (712)
||++.+++|.|. ..+|++++|+|+.|+ ++-|+||+|||||||||+|++.. .|+.|++...+
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Ge------f~fl~GpSGAGKSTllkLi~~~e----~pt~G~i~~~~~dl~~l~ 70 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGE------FVFLTGPSGAGKSTLLKLIYGEE----RPTRGKILVNGHDLSRLK 70 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCce------EEEEECCCCCCHHHHHHHHHhhh----cCCCceEEECCeeccccc
Confidence 589999999993 348999999999999 99999999999999999999999 89999843211
Q ss_pred C---eeeccccC--------------CCccchhccccCCCccccc--------------------chhhHHHHHHHHHHH
Q 005138 80 G---IWMARCAG--------------IEPCTLIMDLEGTDGRERG--------------------EDDTAFEKQSALFAL 122 (712)
Q Consensus 80 g---i~~~~~~~--------------~~~~~~v~d~~g~~~~~r~--------------------~~~~~ferQrv~~A~ 122 (712)
+ -++++.+| ++|..+.+.+.|..+.+.. ...+..|+||++||+
T Consensus 71 ~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIAR 150 (223)
T COG2884 71 GREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIAR 150 (223)
T ss_pred ccccchhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHH
Confidence 0 11222222 3555566666665543321 122344999999999
Q ss_pred HHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecC
Q 005138 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (712)
Q Consensus 123 Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~ 197 (712)
|++ ++||.||||.+|||.. ..+|++++.++... |+||||+|||.+.+....-+++.+.+ |+++.+..
T Consensus 151 AiV~~P~vLlADEPTGNLDp~~------s~~im~lfeeinr~-GtTVl~ATHd~~lv~~~~~rvl~l~~-Grl~~d~~ 220 (223)
T COG2884 151 AIVNQPAVLLADEPTGNLDPDL------SWEIMRLFEEINRL-GTTVLMATHDLELVNRMRHRVLALED-GRLVRDES 220 (223)
T ss_pred HHccCCCeEeecCCCCCCChHH------HHHHHHHHHHHhhc-CcEEEEEeccHHHHHhccCcEEEEeC-CEEEeccc
Confidence 999 9999999999999998 99999999999875 99999999999988876666777777 99987654
No 37
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.93 E-value=5.2e-26 Score=250.01 Aligned_cols=181 Identities=11% Similarity=0.096 Sum_probs=139.4
Q ss_pred cccEEEEeeeeeecc-ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee---
Q 005138 7 CCSTQLIDGDGTFNV-SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW--- 82 (712)
Q Consensus 7 ~~~I~l~~l~k~y~~-~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~--- 82 (712)
+++|++.|+++.|+. .+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+..+
T Consensus 17 ~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge------~~~llGpsGsGKSTLLr~IaGl~----~p~~G~I~i~g~~i~~~ 86 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQHAVDDVSLTIYKGE------IFALLGASGCGKSTLLRMLAGFE----QPTAGQIMLDGVDLSHV 86 (377)
T ss_pred CceEEEEeEEEEECCEEEEeeeEEEEcCCC------EEEEECCCCCcHHHHHHHHhCCC----CCCceEEEECCEECCCC
Confidence 457999999999953 57999999999999 99999999999999999999999 89999854322110
Q ss_pred ---------eccccCCCccchhcccc-------CCCcc--------------------cccchhhHHHHHHHHHHHHHH-
Q 005138 83 ---------MARCAGIEPCTLIMDLE-------GTDGR--------------------ERGEDDTAFEKQSALFALAVS- 125 (712)
Q Consensus 83 ---------~~~~~~~~~~~~v~d~~-------g~~~~--------------------~r~~~~~~ferQrv~~A~Ala- 125 (712)
+.......+...+.++. +.+.. ......+..|+||++||+|++
T Consensus 87 ~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~ 166 (377)
T PRK11607 87 PPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAK 166 (377)
T ss_pred CHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 00111112222222211 11110 011122344999999999999
Q ss_pred --HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccccC
Q 005138 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (712)
Q Consensus 126 --~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~~ 203 (712)
++||||||+++||+.. +..+.+.++++.++.|.|+|+||||.+++..+||++++|.+ |++...|++.+++.
T Consensus 167 ~P~lLLLDEP~s~LD~~~------r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~-G~i~~~g~~~~~~~ 239 (377)
T PRK11607 167 RPKLLLLDEPMGALDKKL------RDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNR-GKFVQIGEPEEIYE 239 (377)
T ss_pred CCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeC-CEEEEEcCHHHHHh
Confidence 9999999999999998 88898888888776699999999999999999999999998 99999999888765
Q ss_pred C
Q 005138 204 E 204 (712)
Q Consensus 204 ~ 204 (712)
.
T Consensus 240 ~ 240 (377)
T PRK11607 240 H 240 (377)
T ss_pred C
Confidence 4
No 38
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=6.5e-26 Score=233.72 Aligned_cols=176 Identities=18% Similarity=0.149 Sum_probs=132.8
Q ss_pred EEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee-----
Q 005138 10 TQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW----- 82 (712)
Q Consensus 10 I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~----- 82 (712)
|++.|+++.|+ ..+++++++++..|+ +++|+||||||||||||+|+|+. +|++|++...+. +.
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge------~~~l~G~nGsGKSTLl~~l~G~~----~p~~G~i~~~g~~~~~~~~~ 70 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGE------ILAIIGPSGSGKSTLLRLIVGLL----RPDSGEVLIDGEDISGLSEA 70 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEEccccChh
Confidence 46899999995 457999999999999 99999999999999999999999 899998532211 00
Q ss_pred ----eccccCC-------Cccchhcccc--------------------------CCCc--ccccchhhHHHHHHHHHHHH
Q 005138 83 ----MARCAGI-------EPCTLIMDLE--------------------------GTDG--RERGEDDTAFEKQSALFALA 123 (712)
Q Consensus 83 ----~~~~~~~-------~~~~~v~d~~--------------------------g~~~--~~r~~~~~~ferQrv~~A~A 123 (712)
+...+++ .+...+.+.. |+.. .......+..|+||++||+|
T Consensus 71 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~a 150 (235)
T cd03261 71 ELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARA 150 (235)
T ss_pred hHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 0011111 1111111110 1110 00111233459999999999
Q ss_pred HH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCccc
Q 005138 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (712)
Q Consensus 124 la---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e 200 (712)
++ ++|||||||++||+.. ...+++.+.++.++.|+|||+||||++.+...|++++++.+ |+++..|++.+
T Consensus 151 l~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~-G~i~~~g~~~~ 223 (235)
T cd03261 151 LALDPELLLYDEPTAGLDPIA------SGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYD-GKIVAEGTPEE 223 (235)
T ss_pred HhcCCCEEEecCCcccCCHHH------HHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEEC-CeEEEecCHHH
Confidence 99 9999999999999998 99999999998764589999999999998888999999988 99999888665
Q ss_pred cc
Q 005138 201 AH 202 (712)
Q Consensus 201 ~~ 202 (712)
..
T Consensus 224 ~~ 225 (235)
T cd03261 224 LR 225 (235)
T ss_pred Hc
Confidence 54
No 39
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=5.1e-26 Score=224.92 Aligned_cols=179 Identities=15% Similarity=0.187 Sum_probs=136.9
Q ss_pred cccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeecc
Q 005138 7 CCSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMAR 85 (712)
Q Consensus 7 ~~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~ 85 (712)
.+.+++.|++..|+ ..+|++|+++|..+. |+|+|||+||||||||++++.+. +...|- ..++.+.+.+
T Consensus 5 ~~~~~~~~l~~yYg~~~aL~~i~l~i~~~~------VTAlIGPSGcGKST~LR~lNRmn----dl~~~~-r~~G~v~~~g 73 (253)
T COG1117 5 IPAIEVRDLNLYYGDKHALKDINLDIPKNK------VTALIGPSGCGKSTLLRCLNRMN----DLIPGA-RVEGEVLLDG 73 (253)
T ss_pred cceeEecceeEEECchhhhccCceeccCCc------eEEEECCCCcCHHHHHHHHHhhc----ccCcCc-eEEEEEEECC
Confidence 35699999999995 568999999999999 99999999999999999999987 555432 1122122222
Q ss_pred c---------------cC-------------CCccchhccccCCCccc------------------------ccchhhHH
Q 005138 86 C---------------AG-------------IEPCTLIMDLEGTDGRE------------------------RGEDDTAF 113 (712)
Q Consensus 86 ~---------------~~-------------~~~~~~v~d~~g~~~~~------------------------r~~~~~~f 113 (712)
. +| ++|..+.....|....+ .+-..++.
T Consensus 74 ~ni~~~~~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGG 153 (253)
T COG1117 74 KNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGG 153 (253)
T ss_pred eeccCCCCCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChh
Confidence 1 11 12222223333333210 00012334
Q ss_pred HHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCC
Q 005138 114 EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ 190 (712)
Q Consensus 114 erQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G 190 (712)
|+||++||||+| +||||||||++|||.+ ...|-+++.+|.+ .-||++|||+|..+.+.+|+..++.. |
T Consensus 154 QQQRLcIARalAv~PeVlLmDEPtSALDPIs------T~kIEeLi~eLk~--~yTIviVTHnmqQAaRvSD~taFf~~-G 224 (253)
T COG1117 154 QQQRLCIARALAVKPEVLLMDEPTSALDPIS------TLKIEELITELKK--KYTIVIVTHNMQQAARVSDYTAFFYL-G 224 (253)
T ss_pred HHHHHHHHHHHhcCCcEEEecCcccccCchh------HHHHHHHHHHHHh--ccEEEEEeCCHHHHHHHhHhhhhhcc-c
Confidence 999999999999 9999999999999998 8889999999973 68999999999999999999999988 9
Q ss_pred eEEEecCcccccCCc
Q 005138 191 KIWDSVPKPQAHMET 205 (712)
Q Consensus 191 ~I~~~g~~~e~~~~~ 205 (712)
+++..|+..++|.++
T Consensus 225 ~LvE~g~T~~iF~~P 239 (253)
T COG1117 225 ELVEFGPTDKIFTNP 239 (253)
T ss_pred EEEEEcCHHhhhcCc
Confidence 999999998888653
No 40
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.93 E-value=4.3e-26 Score=236.32 Aligned_cols=180 Identities=18% Similarity=0.213 Sum_probs=144.5
Q ss_pred ccEEEEeeeeeeccc-------------------------cccccccccccccccccccEEEEEcCCCCChhHHHHHHhc
Q 005138 8 CSTQLIDGDGTFNVS-------------------------GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFG 62 (712)
Q Consensus 8 ~~I~l~~l~k~y~~~-------------------------~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~G 62 (712)
..|+++|++|-|+.. .+++++++++.|+ |..|+|-+|||||||+++|++
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~Ge------IfViMGLSGSGKSTLvR~~Nr 76 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGE------IFVIMGLSGSGKSTLVRLLNR 76 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCe------EEEEEecCCCCHHHHHHHHhc
Confidence 468999999999531 4678999999999 999999999999999999999
Q ss_pred cccCccCCCCCeeeccCC-ee-ec----------------cccCC-------CccchhccccCCCcccccc---------
Q 005138 63 TNFREMDAFKGRSQTTKG-IW-MA----------------RCAGI-------EPCTLIMDLEGTDGRERGE--------- 108 (712)
Q Consensus 63 l~f~~m~p~sG~~~~t~g-i~-~~----------------~~~~~-------~~~~~v~d~~g~~~~~r~~--------- 108 (712)
+. .|++|++...+. +. +. +..+. +|..+-+++.|.+..+|.+
T Consensus 77 Li----ept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~V 152 (386)
T COG4175 77 LI----EPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELV 152 (386)
T ss_pred cC----CCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHc
Confidence 99 999999654332 10 00 01111 2333344555555444332
Q ss_pred -----------hhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCC
Q 005138 109 -----------DDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKT 174 (712)
Q Consensus 109 -----------~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~ 174 (712)
..+..|+|||.+|+|++ +||++|||+|+|||-- +.++-+.+++|.++.++||+|||||++
T Consensus 153 gL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLI------R~~mQdeLl~Lq~~l~KTIvFitHDLd 226 (386)
T COG4175 153 GLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLI------RTEMQDELLELQAKLKKTIVFITHDLD 226 (386)
T ss_pred CchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHH------HHHHHHHHHHHHHHhCCeEEEEecCHH
Confidence 12334999999999999 9999999999999987 888889999998888999999999999
Q ss_pred CcccccccccceecCCeEEEecCcccccCC
Q 005138 175 RTPLENLEPVLREDIQKIWDSVPKPQAHME 204 (712)
Q Consensus 175 ~~~~~~~~~~ll~~~G~I~~~g~~~e~~~~ 204 (712)
++..+.+++.+|++ |+|+..|+|+++..+
T Consensus 227 EAlriG~rIaimkd-G~ivQ~Gtp~eIl~~ 255 (386)
T COG4175 227 EALRIGDRIAIMKD-GEIVQVGTPEEILLN 255 (386)
T ss_pred HHHhccceEEEecC-CeEEEeCCHHHHHcC
Confidence 99999999999999 999999999998754
No 41
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.93 E-value=9.7e-26 Score=231.68 Aligned_cols=177 Identities=12% Similarity=0.139 Sum_probs=132.2
Q ss_pred EEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC--------
Q 005138 10 TQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-------- 80 (712)
Q Consensus 10 I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-------- 80 (712)
|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+.
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge------~~~l~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~~~ 70 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGE------IVGLLGPNGAGKTTTFYMIVGLV----KPDSGKILLDGQDITKLPMH 70 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCc------EEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEecccCCHh
Confidence 47899999995 457999999999999 99999999999999999999999 899998432211
Q ss_pred ------e-eeccccCCCccchhccc-------cCCCcc--------------------cccchhhHHHHHHHHHHHHHH-
Q 005138 81 ------I-WMARCAGIEPCTLIMDL-------EGTDGR--------------------ERGEDDTAFEKQSALFALAVS- 125 (712)
Q Consensus 81 ------i-~~~~~~~~~~~~~v~d~-------~g~~~~--------------------~r~~~~~~ferQrv~~A~Ala- 125 (712)
+ ++.......+...+.+. .+.... ......+..|+||++||+|++
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 71 KRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred HHHhccEEEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 0 00000001111111110 111000 001112334999999999999
Q ss_pred --HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccccC
Q 005138 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (712)
Q Consensus 126 --~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~~ 203 (712)
++|||||||++||+.. ...+.+++.++.+. |+|+|++|||++.+...|++++++.+ |+++..++..+...
T Consensus 151 ~p~llllDEPt~~LD~~~------~~~~~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~-G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIA------VQDIQKIIKILKDR-GIGVLITDHNVRETLSITDRAYIIYE-GKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEEC-CeEEEEeCHHHhhc
Confidence 9999999999999998 99999999998764 89999999999988888999999988 99998887766544
Q ss_pred C
Q 005138 204 E 204 (712)
Q Consensus 204 ~ 204 (712)
.
T Consensus 223 ~ 223 (232)
T cd03218 223 N 223 (232)
T ss_pred C
Confidence 3
No 42
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.93 E-value=6.7e-26 Score=242.71 Aligned_cols=177 Identities=11% Similarity=0.132 Sum_probs=135.6
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC------
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------ 80 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g------ 80 (712)
++|++.|+++.|+ ..++++++|+++.|+ +++|+|||||||||||++|+|+. +|++|++...+.
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~vsl~i~~Ge------~~~l~G~NGaGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~ 72 (303)
T TIGR01288 3 VAIDLVGVSKSYGDKVVVNDLSFTIARGE------CFGLLGPNGAGKSTIARMLLGMI----SPDRGKITVLGEPVPSRA 72 (303)
T ss_pred cEEEEEeEEEEeCCeEEEcceeEEEcCCc------EEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEECcccH
Confidence 3699999999995 457999999999999 99999999999999999999999 899998543211
Q ss_pred ------e-eeccccCCCccchhccc-------cCCC------------------c--ccccchhhHHHHHHHHHHHHHH-
Q 005138 81 ------I-WMARCAGIEPCTLIMDL-------EGTD------------------G--RERGEDDTAFEKQSALFALAVS- 125 (712)
Q Consensus 81 ------i-~~~~~~~~~~~~~v~d~-------~g~~------------------~--~~r~~~~~~ferQrv~~A~Ala- 125 (712)
+ ++.......+...+.+. .+.+ . .......+.+|+||++||+|++
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 152 (303)
T TIGR01288 73 RLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALIN 152 (303)
T ss_pred HHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 1 11111111111111111 1111 0 0011223345999999999999
Q ss_pred --HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCccccc
Q 005138 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (712)
Q Consensus 126 --~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~ 202 (712)
++|||||||++||+.. +..+.+.+.++.++ |+|||++|||++++...|++++++.+ |+++..|++.+..
T Consensus 153 ~p~lllLDEPt~gLD~~~------~~~l~~~l~~~~~~-g~til~~sH~~~~~~~~~d~i~~l~~-G~i~~~g~~~~~~ 223 (303)
T TIGR01288 153 DPQLLILDEPTTGLDPHA------RHLIWERLRSLLAR-GKTILLTTHFMEEAERLCDRLCVLES-GRKIAEGRPHALI 223 (303)
T ss_pred CCCEEEEeCCCcCCCHHH------HHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEEC-CEEEEEcCHHHHH
Confidence 9999999999999998 99999999998764 99999999999999889999999988 9999999876654
No 43
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=8.9e-26 Score=229.14 Aligned_cols=170 Identities=15% Similarity=0.196 Sum_probs=127.1
Q ss_pred EEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC--------
Q 005138 10 TQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-------- 80 (712)
Q Consensus 10 I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-------- 80 (712)
|++.|+++.|+ ..++++++|++..|+ +++|+||||||||||+++|+|+. +|++|++...+.
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge------~~~i~G~nGsGKSTLl~~l~G~~----~p~~G~i~~~g~~~~~~~~~ 70 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGE------FLALLGPSGCGKTTLLRLIAGLE----RPDSGEILIDGRDVTGVPPE 70 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCc------EEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEEcCcCchh
Confidence 46889999995 457999999999999 99999999999999999999998 899998532211
Q ss_pred ---e-eeccccCCCccchhcccc-------------------------CCCc--ccccchhhHHHHHHHHHHHHHH---H
Q 005138 81 ---I-WMARCAGIEPCTLIMDLE-------------------------GTDG--RERGEDDTAFEKQSALFALAVS---D 126 (712)
Q Consensus 81 ---i-~~~~~~~~~~~~~v~d~~-------------------------g~~~--~~r~~~~~~ferQrv~~A~Ala---~ 126 (712)
+ ++.......+...+.+.. |+.. .......+..|+||++||+|++ +
T Consensus 71 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 150 (213)
T cd03259 71 RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPS 150 (213)
T ss_pred hccEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 1 011110001111111110 1110 0001122344999999999999 9
Q ss_pred HhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEec
Q 005138 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 127 iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g 196 (712)
+||+||||++||+.. ...+++.+.++.++.|+|||++|||++.+...|++++++.+ |+++..|
T Consensus 151 ~lllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 151 LLLLDEPLSALDAKL------REELREELKELQRELGITTIYVTHDQEEALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred EEEEcCCcccCCHHH------HHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999998 99999999998764589999999999988888999999988 9987653
No 44
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=5.7e-26 Score=228.22 Aligned_cols=177 Identities=13% Similarity=0.165 Sum_probs=141.0
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCe---ee
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGI---WM 83 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi---~~ 83 (712)
|++++.+++|+|+ ..++++++|++.+|+ +.|++|||||||||++++|.|++ .|++|++...++- ..
T Consensus 1 ~~L~ie~vtK~Fg~k~av~~isf~v~~G~------i~GllG~NGAGKTTtfRmILgll----e~~~G~I~~~g~~~~~~~ 70 (300)
T COG4152 1 MALEIEGVTKSFGDKKAVDNISFEVPPGE------IFGLLGPNGAGKTTTFRMILGLL----EPTEGEITWNGGPLSQEI 70 (300)
T ss_pred CceEEecchhccCceeeecceeeeecCCe------EEEeecCCCCCccchHHHHhccC----CccCceEEEcCcchhhhh
Confidence 3699999999995 568999999999999 99999999999999999999999 9999997555441 11
Q ss_pred ccccCC-------Cccchhc-------cccCCCcccc--------------------cchhhHHHHHHHHHHHHHH---H
Q 005138 84 ARCAGI-------EPCTLIM-------DLEGTDGRER--------------------GEDDTAFEKQSALFALAVS---D 126 (712)
Q Consensus 84 ~~~~~~-------~~~~~v~-------d~~g~~~~~r--------------------~~~~~~ferQrv~~A~Ala---~ 126 (712)
..++|| .+.+.|. .+-|++..+. .+..+..++|++.|..|++ +
T Consensus 71 ~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePe 150 (300)
T COG4152 71 KNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPE 150 (300)
T ss_pred hhhcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCC
Confidence 223332 2222222 2233332211 1222334899999999999 9
Q ss_pred HhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCccccc
Q 005138 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (712)
Q Consensus 127 iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~ 202 (712)
++|||||++||||.+ .+.+-+.+.++..+ |.||||+||.|+.+..+||+++++.. |+.+..|+...+.
T Consensus 151 LlILDEPFSGLDPVN------~elLk~~I~~lk~~-GatIifSsH~Me~vEeLCD~llmL~k-G~~V~~G~v~~ir 218 (300)
T COG4152 151 LLILDEPFSGLDPVN------VELLKDAIFELKEE-GATIIFSSHRMEHVEELCDRLLMLKK-GQTVLYGTVEDIR 218 (300)
T ss_pred EEEecCCccCCChhh------HHHHHHHHHHHHhc-CCEEEEecchHHHHHHHhhhhheecC-CceEEeccHHHHH
Confidence 999999999999998 88888899999775 99999999999999999999999999 9999999876654
No 45
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=1.4e-25 Score=229.00 Aligned_cols=173 Identities=10% Similarity=0.106 Sum_probs=130.0
Q ss_pred EEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC--------
Q 005138 10 TQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-------- 80 (712)
Q Consensus 10 I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-------- 80 (712)
|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+.
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge------~~~i~G~nGsGKSTLl~~i~G~~----~~~~G~i~~~g~~~~~~~~~ 70 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGE------IFGLLGPNGAGKTTTIKMLTTLL----KPTSGRATVAGHDVVREPRE 70 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEecCcChHH
Confidence 57899999995 457999999999999 99999999999999999999998 899998532211
Q ss_pred ----e-eeccccCCCccchhccc-------cCCCcc--------------------cccchhhHHHHHHHHHHHHHH---
Q 005138 81 ----I-WMARCAGIEPCTLIMDL-------EGTDGR--------------------ERGEDDTAFEKQSALFALAVS--- 125 (712)
Q Consensus 81 ----i-~~~~~~~~~~~~~v~d~-------~g~~~~--------------------~r~~~~~~ferQrv~~A~Ala--- 125 (712)
+ ++.......+...+.+. .+.... ......+..|+||++||+|++
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p 150 (220)
T cd03265 71 VRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRP 150 (220)
T ss_pred HhhcEEEecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 0 00000001111111111 111100 001122344999999999999
Q ss_pred HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcc
Q 005138 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (712)
Q Consensus 126 ~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~ 199 (712)
+++|+||||++||+.. ...+.+.+.++.++.|+|+|++|||++.+...|++++++.+ |+++..+++.
T Consensus 151 ~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~-G~i~~~~~~~ 217 (220)
T cd03265 151 EVLFLDEPTIGLDPQT------RAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDH-GRIIAEGTPE 217 (220)
T ss_pred CEEEEcCCccCCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeC-CEEEEeCChH
Confidence 9999999999999998 99999999998765589999999999999888999999988 9998887654
No 46
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.6e-25 Score=231.06 Aligned_cols=180 Identities=13% Similarity=0.147 Sum_probs=135.5
Q ss_pred cccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCe----
Q 005138 7 CCSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGI---- 81 (712)
Q Consensus 7 ~~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi---- 81 (712)
|.+|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+..
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge------~~~i~G~nGsGKSTLl~~l~G~~----~p~~G~i~~~g~~~~~~ 72 (237)
T PRK11614 3 KVMLSFDKVSAHYGKIQALHEVSLHINQGE------IVTLIGANGAGKTTLLGTLCGDP----RATSGRIVFDGKDITDW 72 (237)
T ss_pred ccEEEEEeEEEeeCCceeeeeeEEEEcCCc------EEEEECCCCCCHHHHHHHHcCCC----CCCCceEEECCEecCCC
Confidence 34799999999995 457999999999999 99999999999999999999999 8999985322110
Q ss_pred ----eeccccCC-------CccchhccccCC-----Cccc---------------------ccchhhHHHHHHHHHHHHH
Q 005138 82 ----WMARCAGI-------EPCTLIMDLEGT-----DGRE---------------------RGEDDTAFEKQSALFALAV 124 (712)
Q Consensus 82 ----~~~~~~~~-------~~~~~v~d~~g~-----~~~~---------------------r~~~~~~ferQrv~~A~Al 124 (712)
.....+++ .+...+.+.... .... .....+..|+||++||+|+
T Consensus 73 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al 152 (237)
T PRK11614 73 QTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRAL 152 (237)
T ss_pred CHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHH
Confidence 00011111 111111111000 0000 0011123399999999999
Q ss_pred H---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccc
Q 005138 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (712)
Q Consensus 125 a---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~ 201 (712)
+ ++||+||||++||+.. .+.+.+.+.++.++ |.|+|++|||++.+...|++++++.+ |+++..|++++.
T Consensus 153 ~~~p~illlDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~-G~i~~~~~~~~~ 224 (237)
T PRK11614 153 MSQPRLLLLDEPSLGLAPII------IQQIFDTIEQLREQ-GMTIFLVEQNANQALKLADRGYVLEN-GHVVLEDTGDAL 224 (237)
T ss_pred HhCCCEEEEcCccccCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCcHHHHHhhCCEEEEEeC-CEEEeeCCHHHH
Confidence 9 9999999999999998 99999999998764 89999999999988888999999988 999999987766
Q ss_pred cCC
Q 005138 202 HME 204 (712)
Q Consensus 202 ~~~ 204 (712)
..+
T Consensus 225 ~~~ 227 (237)
T PRK11614 225 LAN 227 (237)
T ss_pred hcC
Confidence 543
No 47
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=1.6e-25 Score=243.81 Aligned_cols=178 Identities=11% Similarity=0.169 Sum_probs=136.0
Q ss_pred cEEEEeeeeeec-----cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee
Q 005138 9 STQLIDGDGTFN-----VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW 82 (712)
Q Consensus 9 ~I~l~~l~k~y~-----~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~ 82 (712)
||++.|+++.|+ ..++++++|+++.|+ +++|+||||||||||||+|+|+. +|++|++...+. +.
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Ge------i~~iiG~nGsGKSTLlk~L~Gl~----~p~~G~I~~~g~~i~ 70 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGE------IFGVIGASGAGKSTLIRCINLLE----RPTSGRVLVDGQDLT 70 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCC------EEEEECCCCCcHHHHHHHHhCCC----CCCceEEEECCEECC
Confidence 489999999996 247999999999999 99999999999999999999999 899998532211 00
Q ss_pred ---------eccccC-------CCccchhccc-------cC------------------CCcc--cccchhhHHHHHHHH
Q 005138 83 ---------MARCAG-------IEPCTLIMDL-------EG------------------TDGR--ERGEDDTAFEKQSAL 119 (712)
Q Consensus 83 ---------~~~~~~-------~~~~~~v~d~-------~g------------------~~~~--~r~~~~~~ferQrv~ 119 (712)
+...++ ..+...+.+. .+ +... ......+..|+||++
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVA 150 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHH
Confidence 001111 1111111111 11 1110 011223445999999
Q ss_pred HHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEec
Q 005138 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 120 ~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g 196 (712)
||+|++ ++|||||||++||+.. ...+.+++.++.++.|+|+|+||||++.+...|++++++.+ |+++..|
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~------~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~-G~i~~~g 223 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPAT------TRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDA-GRLVEQG 223 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEEc
Confidence 999999 9999999999999998 99999999999765689999999999999888999999988 9999999
Q ss_pred CcccccC
Q 005138 197 PKPQAHM 203 (712)
Q Consensus 197 ~~~e~~~ 203 (712)
++.+++.
T Consensus 224 ~~~~~~~ 230 (343)
T PRK11153 224 TVSEVFS 230 (343)
T ss_pred CHHHHHh
Confidence 8776654
No 48
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.92 E-value=2.3e-25 Score=229.84 Aligned_cols=176 Identities=10% Similarity=0.120 Sum_probs=131.5
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-------
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------- 80 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g------- 80 (712)
+|++.|+++.|+ ..+++++++++..|+ +++|+||||||||||+++|+|+. +|++|++...+.
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge------~~~i~G~nGsGKSTLl~~l~G~~----~p~~G~i~~~g~~i~~~~~ 70 (236)
T TIGR03864 1 ALEVAGLSFAYGARRALDDVSFTVRPGE------FVALLGPNGAGKSTLFSLLTRLY----VAQEGQISVAGHDLRRAPR 70 (236)
T ss_pred CEEEEeeEEEECCEEEEeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHhCCc----CCCceEEEECCEEcccCCh
Confidence 478999999995 457999999999999 99999999999999999999999 899998533211
Q ss_pred -----e-eeccccCCCccchhccc-------c------------------CCCc--ccccchhhHHHHHHHHHHHHHH--
Q 005138 81 -----I-WMARCAGIEPCTLIMDL-------E------------------GTDG--RERGEDDTAFEKQSALFALAVS-- 125 (712)
Q Consensus 81 -----i-~~~~~~~~~~~~~v~d~-------~------------------g~~~--~~r~~~~~~ferQrv~~A~Ala-- 125 (712)
+ ++...........+.+. . |+.. .......+..|+||++||+|++
T Consensus 71 ~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 71 AALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred hhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 1 00100001011111111 0 1110 0011122344999999999999
Q ss_pred -HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCccccc
Q 005138 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (712)
Q Consensus 126 -~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~ 202 (712)
+++|+||||++||+.. ...+.+.+.++.++.|.|+|++|||++.+.. |++++++.+ |+++..+++.+..
T Consensus 151 p~llllDEP~~~LD~~~------~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~-G~i~~~~~~~~~~ 220 (236)
T TIGR03864 151 PALLLLDEPTVGLDPAS------RAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHR-GRVLADGAAAELR 220 (236)
T ss_pred CCEEEEcCCccCCCHHH------HHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeC-CeEEEeCCHHHHH
Confidence 9999999999999998 9999999999875458999999999998875 999999988 9999888765544
No 49
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=2e-25 Score=229.63 Aligned_cols=177 Identities=13% Similarity=0.165 Sum_probs=133.0
Q ss_pred cEEEEeeeeeec-c----ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee
Q 005138 9 STQLIDGDGTFN-V----SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW 82 (712)
Q Consensus 9 ~I~l~~l~k~y~-~----~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~ 82 (712)
||++.|+++.|+ . .+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+. +.
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge------~~~l~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~ 70 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGE------IFGIIGRSGAGKSTLIRCINGLE----RPTSGSVLVDGTDLT 70 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEEcc
Confidence 488999999995 3 57999999999999 99999999999999999999999 899998532211 00
Q ss_pred ---------eccccC-------CCccchhccc-------cCCCcc--------------------cccchhhHHHHHHHH
Q 005138 83 ---------MARCAG-------IEPCTLIMDL-------EGTDGR--------------------ERGEDDTAFEKQSAL 119 (712)
Q Consensus 83 ---------~~~~~~-------~~~~~~v~d~-------~g~~~~--------------------~r~~~~~~ferQrv~ 119 (712)
....++ ..+...+.+. .+.... ......+..|+||++
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 150 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVG 150 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHH
Confidence 001111 1111111111 111100 001112344999999
Q ss_pred HHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEec
Q 005138 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 120 ~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g 196 (712)
||+|++ +++||||||++||+.. ...+.+.+.++.++.|+|+|+||||++.+...|++++++.+ |+++..+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~------~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~-G~i~~~~ 223 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPET------TQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEK-GEVVEEG 223 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHH------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEec
Confidence 999999 9999999999999998 99999999998765589999999999998888999999988 9999888
Q ss_pred Cccccc
Q 005138 197 PKPQAH 202 (712)
Q Consensus 197 ~~~e~~ 202 (712)
++.+..
T Consensus 224 ~~~~~~ 229 (233)
T cd03258 224 TVEEVF 229 (233)
T ss_pred CHHHHh
Confidence 765543
No 50
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=2.7e-26 Score=224.61 Aligned_cols=187 Identities=12% Similarity=0.159 Sum_probs=148.6
Q ss_pred cccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-----
Q 005138 7 CCSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG----- 80 (712)
Q Consensus 7 ~~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g----- 80 (712)
|..+.+.++.|+|+ ..++++|+++++.|+ +||++|||||||||.++++.|+. +|++|++....-
T Consensus 2 ~~~L~a~~l~K~y~kr~Vv~~Vsl~v~~GE------iVGLLGPNGAGKTT~Fymi~Glv----~~d~G~i~ld~~diT~l 71 (243)
T COG1137 2 MSTLVAENLAKSYKKRKVVNDVSLEVNSGE------IVGLLGPNGAGKTTTFYMIVGLV----RPDSGKILLDDEDITKL 71 (243)
T ss_pred CcEEEehhhhHhhCCeeeeeeeeEEEcCCc------EEEEECCCCCCceeEEEEEEEEE----ecCCceEEECCcccccC
Confidence 45689999999995 567999999999999 99999999999999999999999 999999543221
Q ss_pred -eeeccc--cCC--------------CccchhccccCCCcc--cccc--------------------hhhHHHHHHHHHH
Q 005138 81 -IWMARC--AGI--------------EPCTLIMDLEGTDGR--ERGE--------------------DDTAFEKQSALFA 121 (712)
Q Consensus 81 -i~~~~~--~~~--------------~~~~~v~d~~g~~~~--~r~~--------------------~~~~ferQrv~~A 121 (712)
...+.+ ++| +|...+++....+.. ++.. ..+..||+|+-||
T Consensus 72 Pm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIA 151 (243)
T COG1137 72 PMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIA 151 (243)
T ss_pred ChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHH
Confidence 111111 111 233444444332222 1110 1122299999999
Q ss_pred HHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCc
Q 005138 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (712)
Q Consensus 122 ~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~ 198 (712)
+||+ ..++||||++|+||-. ...|-+++..|..+ |..|+++-|+..++..+|+|.+++.+ |++.++|++
T Consensus 152 RaLa~~P~fiLLDEPFAGVDPia------V~dIq~iI~~L~~r-giGvLITDHNVREtL~i~dRaYIi~~-G~vla~G~p 223 (243)
T COG1137 152 RALAANPKFILLDEPFAGVDPIA------VIDIQRIIKHLKDR-GIGVLITDHNVRETLDICDRAYIISD-GKVLAEGSP 223 (243)
T ss_pred HHHhcCCCEEEecCCccCCCchh------HHHHHHHHHHHHhC-CceEEEccccHHHHHhhhheEEEEec-CeEEecCCH
Confidence 9999 9999999999999998 99999999999765 99999999999999999999999999 999999999
Q ss_pred ccccCCccchhhh
Q 005138 199 PQAHMETPLSEFF 211 (712)
Q Consensus 199 ~e~~~~~~l~d~f 211 (712)
+++.+++....+|
T Consensus 224 ~ei~~n~~Vr~~Y 236 (243)
T COG1137 224 EEIVNNEDVRRVY 236 (243)
T ss_pred HHHhcChhhhhhc
Confidence 9999887776665
No 51
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.92 E-value=2.6e-25 Score=225.60 Aligned_cols=170 Identities=16% Similarity=0.207 Sum_probs=127.0
Q ss_pred EEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC--------
Q 005138 10 TQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-------- 80 (712)
Q Consensus 10 I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-------- 80 (712)
|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+.
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge------~~~l~G~nGsGKSTLl~~l~G~~----~~~~G~v~~~g~~~~~~~~~ 70 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGE------FVVLLGPSGCGKTTTLRMIAGLE----EPTSGRIYIGGRDVTDLPPK 70 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCc------EEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEECCcCCcc
Confidence 46899999995 457999999999999 99999999999999999999998 899998432210
Q ss_pred ---e-eeccccCCCccchhccc-------cCCCccc--------------------ccchhhHHHHHHHHHHHHHH---H
Q 005138 81 ---I-WMARCAGIEPCTLIMDL-------EGTDGRE--------------------RGEDDTAFEKQSALFALAVS---D 126 (712)
Q Consensus 81 ---i-~~~~~~~~~~~~~v~d~-------~g~~~~~--------------------r~~~~~~ferQrv~~A~Ala---~ 126 (712)
+ ++.......+...+.+. .+....+ .....+..|+||+++|+|++ +
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ 150 (213)
T cd03301 71 DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPK 150 (213)
T ss_pred cceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 1 11111001111111111 0111000 00112334999999999999 9
Q ss_pred HhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEec
Q 005138 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 127 iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g 196 (712)
++|+||||++||+.. ...+.+.+.++.++.|+|+|++|||++.+...|++++++.+ |+++..|
T Consensus 151 llllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 151 VFLMDEPLSNLDAKL------RVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred EEEEcCCcccCCHHH------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEEC-CEEEecC
Confidence 999999999999998 99999999998765589999999999988888999999988 9998754
No 52
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.92 E-value=2e-25 Score=214.84 Aligned_cols=180 Identities=19% Similarity=0.211 Sum_probs=140.9
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-eeecc
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IWMAR 85 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~~~~ 85 (712)
+.+++.|+.|.|+ ..+|++|++..+.|+ +++|||.+||||||+|+||+-+. .|+.|++...+. +.+..
T Consensus 5 ~~l~v~dlHK~~G~~eVLKGvSL~A~~Gd------VisIIGsSGSGKSTfLRCiN~LE----~P~~G~I~v~geei~~k~ 74 (256)
T COG4598 5 NALEVEDLHKRYGEHEVLKGVSLQANAGD------VISIIGSSGSGKSTFLRCINFLE----KPSAGSIRVNGEEIRLKR 74 (256)
T ss_pred cceehhHHHhhcccchhhcceeeecCCCC------EEEEecCCCCchhHHHHHHHhhc----CCCCceEEECCeEEEeee
Confidence 4799999999996 457999999999999 99999999999999999999999 899998543332 11110
Q ss_pred -ccC--------------------CC-----ccchhcc--------ccCCCcccccc--------------------hhh
Q 005138 86 -CAG--------------------IE-----PCTLIMD--------LEGTDGRERGE--------------------DDT 111 (712)
Q Consensus 86 -~~~--------------------~~-----~~~~v~d--------~~g~~~~~r~~--------------------~~~ 111 (712)
..| +. ..+.+++ +.|.+..+..+ ..+
T Consensus 75 ~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LS 154 (256)
T COG4598 75 DKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLS 154 (256)
T ss_pred CCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccC
Confidence 000 00 1111111 11222211111 112
Q ss_pred HHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceec
Q 005138 112 AFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (712)
Q Consensus 112 ~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~ 188 (712)
..|+||++||+||+ +++++||||++|||+- ..+++.++.+|.++ |.|+++|||.|.++...+.+++++..
T Consensus 155 GGQQQR~aIARaLameP~vmLFDEPTSALDPEl------VgEVLkv~~~LAeE-grTMv~VTHEM~FAR~Vss~v~fLh~ 227 (256)
T COG4598 155 GGQQQRVAIARALAMEPEVMLFDEPTSALDPEL------VGEVLKVMQDLAEE-GRTMVVVTHEMGFARDVSSHVIFLHQ 227 (256)
T ss_pred chHHHHHHHHHHHhcCCceEeecCCcccCCHHH------HHHHHHHHHHHHHh-CCeEEEEeeehhHHHhhhhheEEeec
Confidence 33999999999999 9999999999999997 99999999999986 99999999999999999999999999
Q ss_pred CCeEEEecCcccccCCc
Q 005138 189 IQKIWDSVPKPQAHMET 205 (712)
Q Consensus 189 ~G~I~~~g~~~e~~~~~ 205 (712)
|.|-..|+|+++|.++
T Consensus 228 -G~iEE~G~P~qvf~nP 243 (256)
T COG4598 228 -GKIEEEGPPEQVFGNP 243 (256)
T ss_pred -ceecccCChHHHhcCC
Confidence 9999999999888653
No 53
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=2.6e-25 Score=230.04 Aligned_cols=179 Identities=12% Similarity=0.120 Sum_probs=134.0
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC-------
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~------- 79 (712)
++|++.++++.|+ ..++++++++++.|+ +++|+|||||||||||++|+|+. +|++|++...+
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Ge------~~~l~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~ 71 (241)
T PRK10895 2 ATLTAKNLAKAYKGRRVVEDVSLTVNSGE------IVGLLGPNGAGKTTTFYMVVGIV----PRDAGNIIIDDEDISLLP 71 (241)
T ss_pred ceEEEeCcEEEeCCEEEEeeeeEEEcCCc------EEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCCCC
Confidence 3699999999995 357999999999999 99999999999999999999998 89999853221
Q ss_pred -------Ceee-ccccCCCccchhcccc--------CCCcc--------------------cccchhhHHHHHHHHHHHH
Q 005138 80 -------GIWM-ARCAGIEPCTLIMDLE--------GTDGR--------------------ERGEDDTAFEKQSALFALA 123 (712)
Q Consensus 80 -------gi~~-~~~~~~~~~~~v~d~~--------g~~~~--------------------~r~~~~~~ferQrv~~A~A 123 (712)
++.+ .......+...+.+.. +.... ......+..|+||++||+|
T Consensus 72 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 151 (241)
T PRK10895 72 LHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARA 151 (241)
T ss_pred HHHHHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHH
Confidence 1111 0010011111111110 00000 0001123349999999999
Q ss_pred HH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCccc
Q 005138 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (712)
Q Consensus 124 la---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e 200 (712)
++ ++||+||||++||+.. ...+.+++.++.+ .|.|+|++||+++.+...|++++++.+ |+++..+++++
T Consensus 152 l~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~-~g~tiii~sH~~~~~~~~~d~v~~l~~-G~i~~~~~~~~ 223 (241)
T PRK10895 152 LAANPKFILLDEPFAGVDPIS------VIDIKRIIEHLRD-SGLGVLITDHNVRETLAVCERAYIVSQ-GHLIAHGTPTE 223 (241)
T ss_pred HhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHh-cCCEEEEEEcCHHHHHHhcCEEEEEeC-CeEEeeCCHHH
Confidence 99 9999999999999998 8999999988865 489999999999988888999999988 99999888766
Q ss_pred ccCC
Q 005138 201 AHME 204 (712)
Q Consensus 201 ~~~~ 204 (712)
....
T Consensus 224 ~~~~ 227 (241)
T PRK10895 224 ILQD 227 (241)
T ss_pred HhcC
Confidence 5543
No 54
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.92 E-value=2.2e-25 Score=238.52 Aligned_cols=175 Identities=14% Similarity=0.157 Sum_probs=134.8
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee----
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW---- 82 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~---- 82 (712)
.+++.|+++.|+ ..++++++|+++.|+ +++|+|||||||||||++|+|+. +|++|++...+. +.
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge------i~~l~G~NGaGKTTLl~~l~Gl~----~~~~G~i~i~g~~~~~~~~ 71 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQKGR------IVGFLGPNGAGKSTTMKIITGYL----PPDSGSVQVCGEDVLQNPK 71 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeCCe------EEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEEcccChH
Confidence 589999999995 457999999999999 99999999999999999999999 899998533211 00
Q ss_pred -eccccC-------CCccchhccc-------cCCCcc--------------------cccchhhHHHHHHHHHHHHHH--
Q 005138 83 -MARCAG-------IEPCTLIMDL-------EGTDGR--------------------ERGEDDTAFEKQSALFALAVS-- 125 (712)
Q Consensus 83 -~~~~~~-------~~~~~~v~d~-------~g~~~~--------------------~r~~~~~~ferQrv~~A~Ala-- 125 (712)
....++ ..+...+.+. .|.+.. ......+.+|+||++||+|++
T Consensus 72 ~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (301)
T TIGR03522 72 EVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHD 151 (301)
T ss_pred HHHhceEEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 001111 1111111111 111110 011222344999999999999
Q ss_pred -HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCccccc
Q 005138 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (712)
Q Consensus 126 -~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~ 202 (712)
++|||||||+|||+.. ++.+++.+.++. + ++|||++||+++++...|++++++.+ |+++..|++.+..
T Consensus 152 p~lliLDEPt~gLD~~~------~~~l~~~l~~~~-~-~~tiii~sH~l~~~~~~~d~i~~l~~-G~i~~~g~~~~~~ 220 (301)
T TIGR03522 152 PKVLILDEPTTGLDPNQ------LVEIRNVIKNIG-K-DKTIILSTHIMQEVEAICDRVIIINK-GKIVADKKLDELS 220 (301)
T ss_pred CCEEEEcCCcccCCHHH------HHHHHHHHHHhc-C-CCEEEEEcCCHHHHHHhCCEEEEEEC-CEEEEeCCHHHHH
Confidence 9999999999999999 999999999985 3 79999999999999999999999998 9999999987654
No 55
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.92 E-value=3e-25 Score=229.64 Aligned_cols=176 Identities=15% Similarity=0.141 Sum_probs=132.4
Q ss_pred cEEEEeeeeeec--cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee---
Q 005138 9 STQLIDGDGTFN--VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW--- 82 (712)
Q Consensus 9 ~I~l~~l~k~y~--~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~--- 82 (712)
||++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+. +.
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge------~~~l~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~ 70 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGE------FVAIIGPSGAGKSTLLRCINRLV----EPSSGSILLEGTDITKLR 70 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCC------EEEEECCCCCCHHHHHHHHhCCc----CCCccEEEECCEEhhhCC
Confidence 488999999995 347999999999999 99999999999999999999999 899998533211 00
Q ss_pred ------eccccC-------CCccchhccccCC---------------Cccc--------------------ccchhhHHH
Q 005138 83 ------MARCAG-------IEPCTLIMDLEGT---------------DGRE--------------------RGEDDTAFE 114 (712)
Q Consensus 83 ------~~~~~~-------~~~~~~v~d~~g~---------------~~~~--------------------r~~~~~~fe 114 (712)
+...++ ..+...+.+.... .... .....+..|
T Consensus 71 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~ 150 (243)
T TIGR02315 71 GKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQ 150 (243)
T ss_pred HHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHH
Confidence 011111 1111111111100 0000 001123349
Q ss_pred HHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCe
Q 005138 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (712)
Q Consensus 115 rQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~ 191 (712)
+||++||+|++ ++||+||||++||+.. ...+.+.+.++.++.|+|+|+||||++.+...|++++++.+ |+
T Consensus 151 ~qrv~la~al~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~-G~ 223 (243)
T TIGR02315 151 QQRVAIARALAQQPDLILADEPIASLDPKT------SKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKA-GE 223 (243)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEEC-CE
Confidence 99999999999 9999999999999998 99999999998765589999999999998888999999988 99
Q ss_pred EEEecCcccc
Q 005138 192 IWDSVPKPQA 201 (712)
Q Consensus 192 I~~~g~~~e~ 201 (712)
++..|++.+.
T Consensus 224 i~~~~~~~~~ 233 (243)
T TIGR02315 224 IVFDGAPSEL 233 (243)
T ss_pred EEecCCHHHh
Confidence 9988876553
No 56
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.92 E-value=4.1e-25 Score=231.36 Aligned_cols=176 Identities=18% Similarity=0.158 Sum_probs=134.2
Q ss_pred cccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC------
Q 005138 7 CCSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------ 79 (712)
Q Consensus 7 ~~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~------ 79 (712)
..+|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+
T Consensus 10 ~~~l~i~~l~~~~~~~~il~~isl~i~~Ge------~~~I~G~NGsGKSTLlk~l~Gl~----~p~~G~i~~~g~~~~~~ 79 (257)
T PRK11247 10 GTPLLLNAVSKRYGERTVLNQLDLHIPAGQ------FVAVVGRSGCGKSTLLRLLAGLE----TPSAGELLAGTAPLAEA 79 (257)
T ss_pred CCcEEEEEEEEEECCcceeeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHhcCC----CCCCeEEEECCEEHHHh
Confidence 45799999999995 457999999999999 99999999999999999999999 89999854311
Q ss_pred --Ce-eeccccCCCccchhcccc-------------------CCCc--ccccchhhHHHHHHHHHHHHHH---HHhhhcc
Q 005138 80 --GI-WMARCAGIEPCTLIMDLE-------------------GTDG--RERGEDDTAFEKQSALFALAVS---DIVLINM 132 (712)
Q Consensus 80 --gi-~~~~~~~~~~~~~v~d~~-------------------g~~~--~~r~~~~~~ferQrv~~A~Ala---~iLlLDE 132 (712)
.+ ++.......+...+.+.. |+.. .......+..|+||++||+|++ ++|||||
T Consensus 80 ~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDE 159 (257)
T PRK11247 80 REDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDE 159 (257)
T ss_pred hCceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 11 111111111111121111 1111 0111223445999999999999 9999999
Q ss_pred ccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcc
Q 005138 133 WCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (712)
Q Consensus 133 P~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~ 199 (712)
||++||+.. ...+.+.+.++.++.|.|+|+||||++.+...|++++++.+ |+++.+++.+
T Consensus 160 Pt~~LD~~~------~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~-G~i~~~~~~~ 219 (257)
T PRK11247 160 PLGALDALT------RIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEE-GKIGLDLTVD 219 (257)
T ss_pred CCCCCCHHH------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEeecccc
Confidence 999999998 99999999998655589999999999988888999999988 9999887654
No 57
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=3.8e-25 Score=225.77 Aligned_cols=173 Identities=17% Similarity=0.238 Sum_probs=129.1
Q ss_pred EEEEeeeeeecc-----ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC-----
Q 005138 10 TQLIDGDGTFNV-----SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK----- 79 (712)
Q Consensus 10 I~l~~l~k~y~~-----~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~----- 79 (712)
|++.|+++.|+. .++++++++++.|+ +++|+|||||||||||++|+|+. +|++|++...+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~------~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~ 70 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGE------FVALVGPSGCGKSTLLRIIAGLE----RPTSGEVLVDGEPVTG 70 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCc------EEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEECcc
Confidence 468999999953 47999999999999 99999999999999999999998 89999854321
Q ss_pred ---Ce-eeccccCCCccchhccc-------cC------------------CCc--ccccchhhHHHHHHHHHHHHHH---
Q 005138 80 ---GI-WMARCAGIEPCTLIMDL-------EG------------------TDG--RERGEDDTAFEKQSALFALAVS--- 125 (712)
Q Consensus 80 ---gi-~~~~~~~~~~~~~v~d~-------~g------------------~~~--~~r~~~~~~ferQrv~~A~Ala--- 125 (712)
.+ ++.......+...+.+. .+ +.. .......+..|+||++||+|++
T Consensus 71 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p 150 (220)
T cd03293 71 PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDP 150 (220)
T ss_pred ccCcEEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 11 11111011111111110 11 110 0011223445999999999999
Q ss_pred HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceec-CCeEEEecCc
Q 005138 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED-IQKIWDSVPK 198 (712)
Q Consensus 126 ~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~-~G~I~~~g~~ 198 (712)
+++||||||++||+.. ...+++++.++.++.|+|||+||||++.+...|++++++.+ .|+++..++.
T Consensus 151 ~lllLDEPt~~LD~~~------~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 151 DVLLLDEPFSALDALT------REQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CEEEECCCCCCCCHHH------HHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999 99999999998655589999999999988888999999983 4999887653
No 58
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.92 E-value=4.4e-25 Score=230.34 Aligned_cols=188 Identities=14% Similarity=0.158 Sum_probs=139.9
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC--Ce-ee
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--GI-WM 83 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~--gi-~~ 83 (712)
.+|++.|+++.|+ ..++++++++++.|+ +++|+|||||||||||++|+|+. +|++|++...+ .+ ++
T Consensus 3 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge------~~~I~G~NGsGKSTLl~~i~Gl~----~p~~G~i~~~~~~~i~~v 72 (251)
T PRK09544 3 SLVSLENVSVSFGQRRVLSDVSLELKPGK------ILTLLGPNGAGKSTLVRVVLGLV----APDEGVIKRNGKLRIGYV 72 (251)
T ss_pred cEEEEeceEEEECCceEEEeEEEEEcCCc------EEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCccCEEEe
Confidence 4799999999995 457999999999999 99999999999999999999999 89999864332 11 11
Q ss_pred ccccCCCcc--chhcc------------------ccCCCcc--cccchhhHHHHHHHHHHHHHH---HHhhhccccCCCc
Q 005138 84 ARCAGIEPC--TLIMD------------------LEGTDGR--ERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIG 138 (712)
Q Consensus 84 ~~~~~~~~~--~~v~d------------------~~g~~~~--~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD 138 (712)
.......+. ..+.+ ..|+... ......+..|+||++||+|++ ++||+||||++||
T Consensus 73 ~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD 152 (251)
T PRK09544 73 PQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152 (251)
T ss_pred ccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 111111110 01111 1111110 011223445999999999999 9999999999999
Q ss_pred hhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccccCCccchhhhcc
Q 005138 139 REQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHMETPLSEFFNV 213 (712)
Q Consensus 139 ~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~~~~~l~d~f~~ 213 (712)
+.. ...+++.+.++.++.|.|||+||||++.+...|++++++. |+++..|++++...+..+.++|+.
T Consensus 153 ~~~------~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~--~~i~~~g~~~~~~~~~~~~~~~~~ 219 (251)
T PRK09544 153 VNG------QVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLN--HHICCSGTPEVVSLHPEFISMFGP 219 (251)
T ss_pred HHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEC--CceEeeCCHHHHhCCHHHHHHhCC
Confidence 998 9999999999876558999999999999988899988884 468888887776655555555543
No 59
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=4.2e-25 Score=234.79 Aligned_cols=179 Identities=17% Similarity=0.186 Sum_probs=137.4
Q ss_pred cEEEEeeeeeecc------ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-e
Q 005138 9 STQLIDGDGTFNV------SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-I 81 (712)
Q Consensus 9 ~I~l~~l~k~y~~------~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i 81 (712)
+|++.++++.|.. .+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+. +
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge------~~~i~G~nGaGKSTLl~~l~Gl~----~p~~G~i~~~g~~~ 71 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGE------FVGLIGHTGSGKSTLIQHLNGLL----KPTSGKIIIDGVDI 71 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCC------EEEEECCCCCcHHHHHHHHhcCC----CCCccEEEECCEEC
Confidence 5899999999952 47999999999999 99999999999999999999999 899998532210 0
Q ss_pred --------eeccccCC---Cc-----cchh-------------------------ccccCCC--c--ccccchhhHHHHH
Q 005138 82 --------WMARCAGI---EP-----CTLI-------------------------MDLEGTD--G--RERGEDDTAFEKQ 116 (712)
Q Consensus 82 --------~~~~~~~~---~~-----~~~v-------------------------~d~~g~~--~--~~r~~~~~~ferQ 116 (712)
.+...+++ .+ ...+ ++..|+. . .......+..|+|
T Consensus 72 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~q 151 (287)
T PRK13637 72 TDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKR 151 (287)
T ss_pred CCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHH
Confidence 00011111 00 0011 1111332 0 1112234556999
Q ss_pred HHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEE
Q 005138 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (712)
Q Consensus 117 rv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~ 193 (712)
|++||+|++ ++||+||||++||+.. +..+++++.++.++.|+|||+||||++.+...|++++++.+ |+++
T Consensus 152 rv~iAraL~~~P~llllDEPt~gLD~~~------~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~-G~i~ 224 (287)
T PRK13637 152 RVAIAGVVAMEPKILILDEPTAGLDPKG------RDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNK-GKCE 224 (287)
T ss_pred HHHHHHHHHcCCCEEEEECCccCCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEE
Confidence 999999999 9999999999999998 99999999999765689999999999998888999999988 9999
Q ss_pred EecCcccccCC
Q 005138 194 DSVPKPQAHME 204 (712)
Q Consensus 194 ~~g~~~e~~~~ 204 (712)
..|++.+++..
T Consensus 225 ~~g~~~~~~~~ 235 (287)
T PRK13637 225 LQGTPREVFKE 235 (287)
T ss_pred EECCHHHHHhC
Confidence 99987776543
No 60
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.92 E-value=4.2e-25 Score=232.63 Aligned_cols=179 Identities=16% Similarity=0.109 Sum_probs=135.2
Q ss_pred cccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-----
Q 005138 7 CCSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG----- 80 (712)
Q Consensus 7 ~~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g----- 80 (712)
+.+|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+.
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~i~~~ 74 (269)
T PRK11831 5 ANLVDMRGVSFTRGNRCIFDNISLTVPRGK------ITAIMGPSGIGKTTLLRLIGGQI----APDHGEILFDGENIPAM 74 (269)
T ss_pred cceEEEeCeEEEECCEEEEeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEEcccc
Confidence 35799999999995 447999999999999 99999999999999999999999 899998533211
Q ss_pred -----------e-eeccccCCCccchhcccc--------------------------CCCc--ccccchhhHHHHHHHHH
Q 005138 81 -----------I-WMARCAGIEPCTLIMDLE--------------------------GTDG--RERGEDDTAFEKQSALF 120 (712)
Q Consensus 81 -----------i-~~~~~~~~~~~~~v~d~~--------------------------g~~~--~~r~~~~~~ferQrv~~ 120 (712)
+ ++.......+...+.+.. |+.. .......+..|+||++|
T Consensus 75 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~l 154 (269)
T PRK11831 75 SRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAAL 154 (269)
T ss_pred ChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHH
Confidence 1 011111111111111111 1100 00011223449999999
Q ss_pred HHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecC
Q 005138 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (712)
Q Consensus 121 A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~ 197 (712)
|+|++ ++|||||||++||+.. .+.+.+.+.++.++.|+|||+||||++.+...|++++++.+ |++...|+
T Consensus 155 aral~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~-G~i~~~g~ 227 (269)
T PRK11831 155 ARAIALEPDLIMFDEPFVGQDPIT------MGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVAD-KKIVAHGS 227 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEEC-CEEEEeCC
Confidence 99999 9999999999999998 99999999998765589999999999998888999999988 99999887
Q ss_pred ccccc
Q 005138 198 KPQAH 202 (712)
Q Consensus 198 ~~e~~ 202 (712)
+.+.+
T Consensus 228 ~~~~~ 232 (269)
T PRK11831 228 AQALQ 232 (269)
T ss_pred HHHHh
Confidence 66544
No 61
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=5.5e-25 Score=229.41 Aligned_cols=178 Identities=12% Similarity=0.119 Sum_probs=134.5
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC--------
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~-------- 79 (712)
+|++.|+++.|+ ..+++++++++..|+ +++|+||||||||||+++|+|+. +|++|++...+
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge------~~~l~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~~ 74 (255)
T PRK11300 5 LLSVSGLMMRFGGLLAVNNVNLEVREQE------IVSLIGPNGAGKTTVFNCLTGFY----KPTGGTILLRGQHIEGLPG 74 (255)
T ss_pred eEEEeeEEEEECCEEEEEeeeeEEcCCe------EEEEECCCCCCHHHHHHHHhCCc----CCCcceEEECCEECCCCCH
Confidence 699999999995 457999999999999 99999999999999999999998 89999843221
Q ss_pred ------Cee-eccccCCCccchhcccc----------------------------------------CCCc--ccccchh
Q 005138 80 ------GIW-MARCAGIEPCTLIMDLE----------------------------------------GTDG--RERGEDD 110 (712)
Q Consensus 80 ------gi~-~~~~~~~~~~~~v~d~~----------------------------------------g~~~--~~r~~~~ 110 (712)
++. +.......+...+.+.. |+.. .......
T Consensus 75 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L 154 (255)
T PRK11300 75 HQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNL 154 (255)
T ss_pred HHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhC
Confidence 110 11111111111111100 0000 0000112
Q ss_pred hHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccccccccee
Q 005138 111 TAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRE 187 (712)
Q Consensus 111 ~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~ 187 (712)
+..|+||++||+|++ ++||+||||++||+.. +..+.+++.++.++.|+|||++||+++.+...|++++++.
T Consensus 155 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~------~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~ 228 (255)
T PRK11300 155 AYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKE------TKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVN 228 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHH------HHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 233999999999999 9999999999999998 9999999999876558999999999999988899999998
Q ss_pred cCCeEEEecCcccccC
Q 005138 188 DIQKIWDSVPKPQAHM 203 (712)
Q Consensus 188 ~~G~I~~~g~~~e~~~ 203 (712)
+ |+++..|++.+...
T Consensus 229 ~-g~i~~~~~~~~~~~ 243 (255)
T PRK11300 229 Q-GTPLANGTPEEIRN 243 (255)
T ss_pred C-CeEEecCCHHHHhh
Confidence 8 99999888766543
No 62
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.92 E-value=3.6e-25 Score=241.79 Aligned_cols=179 Identities=15% Similarity=0.157 Sum_probs=135.7
Q ss_pred cEEEEeeeeeeccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeee-----
Q 005138 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM----- 83 (712)
Q Consensus 9 ~I~l~~l~k~y~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~----- 83 (712)
||++ |+++.|+...+ +++++++.|+ +++|+|||||||||||++|+|+. +|++|++...+..+.
T Consensus 1 ~l~~-~l~k~~~~~~~-~vsl~i~~Ge------~~~l~G~nGsGKSTLl~~iaGl~----~p~~G~I~~~g~~~~~~~~~ 68 (352)
T PRK11144 1 MLEL-NFKQQLGDLCL-TVNLTLPAQG------ITAIFGRSGAGKTSLINAISGLT----RPQKGRIVLNGRVLFDAEKG 68 (352)
T ss_pred CeEE-EEEEEeCCEEE-EEEEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEEccccccc
Confidence 4788 99999965333 8999999999 99999999999999999999999 899998543221100
Q ss_pred ------ccccC-------CCccchhccc-------------------cCCCc--ccccchhhHHHHHHHHHHHHHH---H
Q 005138 84 ------ARCAG-------IEPCTLIMDL-------------------EGTDG--RERGEDDTAFEKQSALFALAVS---D 126 (712)
Q Consensus 84 ------~~~~~-------~~~~~~v~d~-------------------~g~~~--~~r~~~~~~ferQrv~~A~Ala---~ 126 (712)
.+.++ ..+...+.+. .|+.. .......+..|+||++||+|++ +
T Consensus 69 ~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~ 148 (352)
T PRK11144 69 ICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPE 148 (352)
T ss_pred cccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 01111 1111111111 11111 0111223455999999999999 9
Q ss_pred HhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccccCCcc
Q 005138 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHMETP 206 (712)
Q Consensus 127 iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~~~~~ 206 (712)
+|||||||++||+.. +..+.+.++++.++.|+|+|+||||++++...|++++++.+ |+++..|++.+++.+..
T Consensus 149 llLLDEPts~LD~~~------~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~-G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 149 LLLMDEPLASLDLPR------KRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQ-GKVKAFGPLEEVWASSA 221 (352)
T ss_pred EEEEcCCcccCCHHH------HHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeC-CEEEEecCHHHHHhCcc
Confidence 999999999999998 99999999998776689999999999999889999999998 99999999888776543
No 63
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.92 E-value=4.5e-25 Score=223.17 Aligned_cols=169 Identities=15% Similarity=0.156 Sum_probs=126.9
Q ss_pred EEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee----e
Q 005138 10 TQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW----M 83 (712)
Q Consensus 10 I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~----~ 83 (712)
|+++|+++.|+ ..++++++++++.|+ +++|+|||||||||||++|+|+. +|++|++...+. +. .
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~------~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~~~ 70 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGE------IYGFLGPNGAGKTTTMKIILGLI----KPDSGEITFDGKSYQKNIEA 70 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCc------EEEEECCCCCCHHHHHHHHhCCc----CCCceEEEECCCcccchHHH
Confidence 47899999994 457999999999999 99999999999999999999999 899998543221 10 0
Q ss_pred ccccC-------CCccchhccc-------cC--------------CCc--ccccchhhHHHHHHHHHHHHHH---HHhhh
Q 005138 84 ARCAG-------IEPCTLIMDL-------EG--------------TDG--RERGEDDTAFEKQSALFALAVS---DIVLI 130 (712)
Q Consensus 84 ~~~~~-------~~~~~~v~d~-------~g--------------~~~--~~r~~~~~~ferQrv~~A~Ala---~iLlL 130 (712)
...++ ..+...+.+. .+ +.. .......+..|+||+++|+|++ +++|+
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 150 (208)
T cd03268 71 LRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLIL 150 (208)
T ss_pred HhhEEEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 01111 1111111111 01 100 0001122344999999999999 99999
Q ss_pred ccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEec
Q 005138 131 NMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 131 DEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g 196 (712)
||||++||+.. .+.+.+.+.++.+ .|.|+|+||||++.+...|++++++.+ |+++..|
T Consensus 151 DEPt~~LD~~~------~~~l~~~l~~~~~-~~~tii~~tH~~~~~~~~~d~v~~l~~-g~i~~~g 208 (208)
T cd03268 151 DEPTNGLDPDG------IKELRELILSLRD-QGITVLISSHLLSEIQKVADRIGIINK-GKLIEEG 208 (208)
T ss_pred CCCcccCCHHH------HHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHhcCEEEEEEC-CEEEecC
Confidence 99999999998 9999999999876 489999999999999888999999988 9987653
No 64
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=3.5e-25 Score=235.29 Aligned_cols=179 Identities=13% Similarity=0.155 Sum_probs=136.9
Q ss_pred cEEEEeeeeeecc------ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-e
Q 005138 9 STQLIDGDGTFNV------SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-I 81 (712)
Q Consensus 9 ~I~l~~l~k~y~~------~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i 81 (712)
.|++.|+++.|.. .+|++++++|+.|+ +++|+||||||||||+++|+|+. +|++|++...+. +
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge------~~~i~G~nGsGKSTLl~~L~Gl~----~p~~G~i~~~g~~i 71 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGK------YYAIVGQTGSGKSTLIQNINALL----KPTTGTVTVDDITI 71 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEECCEEC
Confidence 4899999999952 48999999999999 99999999999999999999999 899998533211 0
Q ss_pred ----------eeccccCC--Cc---c---chhcc-------------------------ccCCC-c--ccccchhhHHHH
Q 005138 82 ----------WMARCAGI--EP---C---TLIMD-------------------------LEGTD-G--RERGEDDTAFEK 115 (712)
Q Consensus 82 ----------~~~~~~~~--~~---~---~~v~d-------------------------~~g~~-~--~~r~~~~~~fer 115 (712)
.+...+++ .+ . ..+.+ ..|+. . .......+.+|+
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~ 151 (286)
T PRK13646 72 THKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQM 151 (286)
T ss_pred ccccccchHHHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHH
Confidence 00111111 00 0 01111 11221 0 011223345599
Q ss_pred HHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeE
Q 005138 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (712)
Q Consensus 116 Qrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I 192 (712)
||++||+|++ ++||+||||++||+.. ...+.+++.++.++.|+|||+||||++.+...|++++++.+ |++
T Consensus 152 qrv~laraL~~~p~illlDEPt~~LD~~~------~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~-G~i 224 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQS------KRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKE-GSI 224 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHH------HHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEEC-CEE
Confidence 9999999999 9999999999999999 99999999998765689999999999998888999999988 999
Q ss_pred EEecCcccccCC
Q 005138 193 WDSVPKPQAHME 204 (712)
Q Consensus 193 ~~~g~~~e~~~~ 204 (712)
+..|++.+++..
T Consensus 225 ~~~g~~~~~~~~ 236 (286)
T PRK13646 225 VSQTSPKELFKD 236 (286)
T ss_pred EEECCHHHHHhC
Confidence 999987776654
No 65
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=5.5e-25 Score=229.74 Aligned_cols=186 Identities=13% Similarity=0.142 Sum_probs=137.7
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-------
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------- 80 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g------- 80 (712)
||++.|+++.|+ ..++++++++++.|+ +++|+|||||||||||++|+|+. +|++|++...+.
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge------~~~l~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~~ 71 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGK------ITALIGPNGCGKSTLLKCFARLL----TPQSGTVFLGDKPISMLSS 71 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeeeEEcCCc------EEEEECCCCCCHHHHHHHHhCCc----CCCCcEEEECCEEhHHCCH
Confidence 699999999995 357999999999999 99999999999999999999998 899997432211
Q ss_pred ------ee-eccccCCCccchhcccc-----------------------------CCCc--ccccchhhHHHHHHHHHHH
Q 005138 81 ------IW-MARCAGIEPCTLIMDLE-----------------------------GTDG--RERGEDDTAFEKQSALFAL 122 (712)
Q Consensus 81 ------i~-~~~~~~~~~~~~v~d~~-----------------------------g~~~--~~r~~~~~~ferQrv~~A~ 122 (712)
+. +.......+...+.+.. |+.. .......+.+|+||+++|+
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 151 (255)
T PRK11231 72 RQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAM 151 (255)
T ss_pred HHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHH
Confidence 10 01110011111111111 0000 0001112334999999999
Q ss_pred HHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcc
Q 005138 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (712)
Q Consensus 123 Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~ 199 (712)
|++ ++||+||||++||+.. ...+.+.+.++.++ |+|+|++|||++.+...|++++++.+ |+++..|++.
T Consensus 152 al~~~p~llllDEP~~~LD~~~------~~~l~~~l~~l~~~-~~tiii~tH~~~~~~~~~d~i~~l~~-G~i~~~~~~~ 223 (255)
T PRK11231 152 VLAQDTPVVLLDEPTTYLDINH------QVELMRLMRELNTQ-GKTVVTVLHDLNQASRYCDHLVVLAN-GHVMAQGTPE 223 (255)
T ss_pred HHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHC-CCEEEEEECCHHHHHHhcCEEEEEEC-CeEEEEcCHH
Confidence 999 9999999999999998 99999999998654 89999999999999888999999988 9999888876
Q ss_pred cccCCccchhhhc
Q 005138 200 QAHMETPLSEFFN 212 (712)
Q Consensus 200 e~~~~~~l~d~f~ 212 (712)
+......+.++|+
T Consensus 224 ~~~~~~~~~~~~~ 236 (255)
T PRK11231 224 EVMTPGLLRTVFD 236 (255)
T ss_pred HhcCHHHHHHHhC
Confidence 6554433444443
No 66
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.92 E-value=4.6e-25 Score=229.34 Aligned_cols=176 Identities=18% Similarity=0.230 Sum_probs=133.2
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-------
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------- 80 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g------- 80 (712)
+|++.|+++.|+ ..+++++++++..|+ +++|+||||||||||+++|+|+. +|++|++...+.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge------~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~ 72 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGE------VVAIIGPSGSGKTTLLRCINLLE----QPEAGTIRVGDITIDTARS 72 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCC------EEEEECCCCCCHHHHHHHHhcCC----CCCCeEEEECCEEcccccc
Confidence 699999999995 457999999999999 99999999999999999999998 899998532210
Q ss_pred --------------e-eeccccCCCccchhcccc--------------------------CCCcc--cccchhhHHHHHH
Q 005138 81 --------------I-WMARCAGIEPCTLIMDLE--------------------------GTDGR--ERGEDDTAFEKQS 117 (712)
Q Consensus 81 --------------i-~~~~~~~~~~~~~v~d~~--------------------------g~~~~--~r~~~~~~ferQr 117 (712)
+ ++.......+...+.+.. |+... ......+..|+||
T Consensus 73 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qr 152 (250)
T PRK11264 73 LSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQR 152 (250)
T ss_pred ccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHH
Confidence 0 000000011111111110 11100 0011223449999
Q ss_pred HHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEE
Q 005138 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (712)
Q Consensus 118 v~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~ 194 (712)
++||+|++ ++||+||||++||+.. ...+.+.+.++.++ |.|+|++|||++.+...|++++++.+ |+++.
T Consensus 153 v~la~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tvi~~tH~~~~~~~~~d~i~~l~~-G~i~~ 224 (250)
T PRK11264 153 VAIARALAMRPEVILFDEPTSALDPEL------VGEVLNTIRQLAQE-KRTMVIVTHEMSFARDVADRAIFMDQ-GRIVE 224 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEEC-CEEEE
Confidence 99999999 9999999999999998 99999999998764 89999999999998888999999988 99999
Q ss_pred ecCccccc
Q 005138 195 SVPKPQAH 202 (712)
Q Consensus 195 ~g~~~e~~ 202 (712)
.|++.+.+
T Consensus 225 ~~~~~~~~ 232 (250)
T PRK11264 225 QGPAKALF 232 (250)
T ss_pred eCCHHHHh
Confidence 88866554
No 67
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=4.5e-25 Score=236.50 Aligned_cols=178 Identities=16% Similarity=0.175 Sum_probs=135.8
Q ss_pred cEEEEeeeeeecc------ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-e
Q 005138 9 STQLIDGDGTFNV------SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-I 81 (712)
Q Consensus 9 ~I~l~~l~k~y~~------~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i 81 (712)
+|++.|+++.|+. .+++++++++..|+ +++|+||||||||||+++|+|+. +|++|++...+. .
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge------~v~iiG~nGsGKSTLl~~L~Gl~----~p~~G~i~~~g~~~ 71 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGE------FIAIIGQTGSGKTTFIEHLNALL----LPDTGTIEWIFKDE 71 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCC------EEEEECCCCCcHHHHHHHHhCCC----CCCCcEEEEeceec
Confidence 5999999999952 37999999999999 99999999999999999999999 899998533210 0
Q ss_pred ------------------------------eeccccCC--Cc---cc---hhcc-------------------------c
Q 005138 82 ------------------------------WMARCAGI--EP---CT---LIMD-------------------------L 98 (712)
Q Consensus 82 ------------------------------~~~~~~~~--~~---~~---~v~d-------------------------~ 98 (712)
...+.+++ .+ .. .+.+ .
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~ 151 (305)
T PRK13651 72 KNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIEL 151 (305)
T ss_pred ccccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHH
Confidence 00011111 00 00 1111 1
Q ss_pred cCCCc---ccccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecC
Q 005138 99 EGTDG---RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRD 172 (712)
Q Consensus 99 ~g~~~---~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHD 172 (712)
.|+.. .......+..|+||++||+|++ ++||+||||++||+.. ...+.+++.++.+. |+|||+||||
T Consensus 152 ~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~------~~~l~~~l~~l~~~-g~tiiivtHd 224 (305)
T PRK13651 152 VGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQG------VKEILEIFDNLNKQ-GKTIILVTHD 224 (305)
T ss_pred cCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHHC-CCEEEEEeeC
Confidence 12210 0111223445999999999999 9999999999999998 99999999998754 9999999999
Q ss_pred CCCcccccccccceecCCeEEEecCcccccCC
Q 005138 173 KTRTPLENLEPVLREDIQKIWDSVPKPQAHME 204 (712)
Q Consensus 173 l~~~~~~~~~~~ll~~~G~I~~~g~~~e~~~~ 204 (712)
++.+...|++++++.+ |+++..|++.+++.+
T Consensus 225 ~~~~~~~adrv~vl~~-G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 225 LDNVLEWTKRTIFFKD-GKIIKDGDTYDILSD 255 (305)
T ss_pred HHHHHHhCCEEEEEEC-CEEEEECCHHHHhcC
Confidence 9998888999999988 999999988776654
No 68
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.92 E-value=4.3e-25 Score=228.06 Aligned_cols=175 Identities=17% Similarity=0.194 Sum_probs=131.5
Q ss_pred EEEEeeeeeec--cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee----
Q 005138 10 TQLIDGDGTFN--VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW---- 82 (712)
Q Consensus 10 I~l~~l~k~y~--~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~---- 82 (712)
|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+. +.
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~~ 70 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGE------FVALIGPSGAGKSTLLRCLNGLV----EPTSGSVLIDGTDINKLKG 70 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCC------EEEEECCCCCCHHHHHHHHhCCc----CCCCceEEECCEeccccCH
Confidence 46889999995 457999999999999 99999999999999999999999 899998533211 00
Q ss_pred -----eccccC-------CCccchhcccc---------------------------------CCCc--ccccchhhHHHH
Q 005138 83 -----MARCAG-------IEPCTLIMDLE---------------------------------GTDG--RERGEDDTAFEK 115 (712)
Q Consensus 83 -----~~~~~~-------~~~~~~v~d~~---------------------------------g~~~--~~r~~~~~~fer 115 (712)
....++ ..+...+.+.. |+.. .......+..|+
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~ 150 (241)
T cd03256 71 KALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQ 150 (241)
T ss_pred hHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHH
Confidence 000111 11111111111 0000 000111233499
Q ss_pred HHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeE
Q 005138 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (712)
Q Consensus 116 Qrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I 192 (712)
||+++|+|++ ++|||||||++||+.. ...+.+.+.++.++.|+|||+||||++.+...|++++++.+ |++
T Consensus 151 qrv~la~al~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~-G~i 223 (241)
T cd03256 151 QRVAIARALMQQPKLILADEPVASLDPAS------SRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKD-GRI 223 (241)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEE
Confidence 9999999999 9999999999999998 99999999998765589999999999999888999999988 999
Q ss_pred EEecCcccc
Q 005138 193 WDSVPKPQA 201 (712)
Q Consensus 193 ~~~g~~~e~ 201 (712)
+..|++++.
T Consensus 224 ~~~~~~~~~ 232 (241)
T cd03256 224 VFDGPPAEL 232 (241)
T ss_pred EeecCHHHh
Confidence 988876553
No 69
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.92 E-value=7.8e-25 Score=226.82 Aligned_cols=179 Identities=10% Similarity=0.101 Sum_probs=136.0
Q ss_pred cccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC------
Q 005138 7 CCSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------ 79 (712)
Q Consensus 7 ~~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~------ 79 (712)
|++|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+
T Consensus 1 ~~~l~~~~l~~~~~~~~~l~~vsl~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~i~~~ 70 (241)
T PRK14250 1 MNEIEFKEVSYSSFGKEILKDISVKFEGGA------IYTIVGPSGAGKSTLIKLINRLI----DPTEGSILIDGVDIKTI 70 (241)
T ss_pred CceEEEEeEEEEeCCeeeeeeeeEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEEhhhc
Confidence 35799999999994 457999999999999 99999999999999999999998 89999853221
Q ss_pred -------Cee-eccccCCCccchh---------------------ccccCCCc---ccccchhhHHHHHHHHHHHHHH--
Q 005138 80 -------GIW-MARCAGIEPCTLI---------------------MDLEGTDG---RERGEDDTAFEKQSALFALAVS-- 125 (712)
Q Consensus 80 -------gi~-~~~~~~~~~~~~v---------------------~d~~g~~~---~~r~~~~~~ferQrv~~A~Ala-- 125 (712)
++. +.......+ ..+ ++..|+.. .......+..|+||+++|+|++
T Consensus 71 ~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 71 DVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred ChHHhhhcEEEEecCchhch-hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 110 011000000 001 11112210 0111223455999999999999
Q ss_pred -HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccccC
Q 005138 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (712)
Q Consensus 126 -~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~~ 203 (712)
++||+||||++||+.. ...+.+.+.++.++.|.|+|++|||++.+...|++++++.+ |+++..+++.+.+.
T Consensus 150 p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~-G~i~~~~~~~~~~~ 221 (241)
T PRK14250 150 PEVLLLDEPTSALDPTS------TEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNK-GILVEYAKTYDFFT 221 (241)
T ss_pred CCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeC-CEEEEeCCHHHHhc
Confidence 9999999999999998 99999999998764589999999999998888999999988 99998888766543
No 70
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.92 E-value=5.9e-25 Score=226.26 Aligned_cols=181 Identities=17% Similarity=0.146 Sum_probs=133.4
Q ss_pred cEEEEeeeeeeccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC---------
Q 005138 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (712)
Q Consensus 9 ~I~l~~l~k~y~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~--------- 79 (712)
||++.|+++.|+. ...++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+
T Consensus 1 ~l~~~~l~~~~~~-~~~~is~~i~~Ge------~~~l~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~~~ 69 (232)
T PRK10771 1 MLKLTDITWLYHH-LPMRFDLTVERGE------RVAILGPSGAGKSTLLNLIAGFL----TPASGSLTLNGQDHTTTPPS 69 (232)
T ss_pred CeEEEEEEEEECC-ccceeEEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCeecCcCChh
Confidence 4889999999964 2358999999999 99999999999999999999999 89999853221
Q ss_pred --Cee-eccccCCCccchhccccCCC--c----c----cc-----------------cchhhHHHHHHHHHHHHHH---H
Q 005138 80 --GIW-MARCAGIEPCTLIMDLEGTD--G----R----ER-----------------GEDDTAFEKQSALFALAVS---D 126 (712)
Q Consensus 80 --gi~-~~~~~~~~~~~~v~d~~g~~--~----~----~r-----------------~~~~~~ferQrv~~A~Ala---~ 126 (712)
++. +.......+...+.+..... . . .+ ....+..|+||+++|+|++ +
T Consensus 70 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 149 (232)
T PRK10771 70 RRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQP 149 (232)
T ss_pred hccEEEEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 111 11111111111111111000 0 0 00 0112233999999999999 9
Q ss_pred HhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccccCCcc
Q 005138 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHMETP 206 (712)
Q Consensus 127 iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~~~~~ 206 (712)
++|+||||++||+.. .+.+.+.+.++.++.|+|+|+||||++.+...|++++++.+ |++...|++.+......
T Consensus 150 lllLDEP~~gLD~~~------~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~-g~i~~~g~~~~~~~~~~ 222 (232)
T PRK10771 150 ILLLDEPFSALDPAL------RQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVAD-GRIAWDGPTDELLSGKA 222 (232)
T ss_pred EEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC-CEEEEeCCHHHHHhChh
Confidence 999999999999998 99999999998765589999999999998888999999988 99999888766654433
Q ss_pred c
Q 005138 207 L 207 (712)
Q Consensus 207 l 207 (712)
+
T Consensus 223 ~ 223 (232)
T PRK10771 223 S 223 (232)
T ss_pred H
Confidence 3
No 71
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.92 E-value=5.6e-25 Score=225.87 Aligned_cols=175 Identities=18% Similarity=0.182 Sum_probs=131.5
Q ss_pred EEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC---------
Q 005138 10 TQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (712)
Q Consensus 10 I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~--------- 79 (712)
|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge------~~~l~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~ 70 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGE------VTCVLGRNGVGKTTLLKTLMGLL----PVKSGSIRLDGEDITKLPPH 70 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCCEEEECCEECCCCCHH
Confidence 46899999995 457999999999999 99999999999999999999999 89999853221
Q ss_pred -----Ce-eeccccCCCccchhcc-------ccCCCcc------------------cccchhhHHHHHHHHHHHHHH---
Q 005138 80 -----GI-WMARCAGIEPCTLIMD-------LEGTDGR------------------ERGEDDTAFEKQSALFALAVS--- 125 (712)
Q Consensus 80 -----gi-~~~~~~~~~~~~~v~d-------~~g~~~~------------------~r~~~~~~ferQrv~~A~Ala--- 125 (712)
++ ++.......+...+.+ ..+.... ......+..|+||++||+|++
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 150 (230)
T TIGR03410 71 ERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRP 150 (230)
T ss_pred HHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 00 0111101111111111 0010000 001112334999999999999
Q ss_pred HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccc
Q 005138 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (712)
Q Consensus 126 ~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~ 201 (712)
+++|+||||++||+.. ...+.+++.++.++.|+|+|++||+++.+...|++++++.+ |+++..|++.++
T Consensus 151 ~illlDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~-g~i~~~~~~~~~ 219 (230)
T TIGR03410 151 KLLLLDEPTEGIQPSI------IKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMER-GRVVASGAGDEL 219 (230)
T ss_pred CEEEecCCcccCCHHH------HHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEECCHHHc
Confidence 9999999999999998 99999999998765589999999999999888999999988 999998886554
No 72
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.91 E-value=7e-25 Score=223.26 Aligned_cols=169 Identities=14% Similarity=0.124 Sum_probs=127.1
Q ss_pred cEEEEeeeeeecc-----ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC---
Q 005138 9 STQLIDGDGTFNV-----SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG--- 80 (712)
Q Consensus 9 ~I~l~~l~k~y~~-----~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g--- 80 (712)
||++.|+++.|+. .+++++++++..|+ +++|+|+|||||||||++|+|+. +|++|++...+.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~ 70 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGE------VTGLLGPNGAGKTTTLRMLAGLL----EPDAGFATVDGFDVV 70 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCc------EEEEECCCCCCHHHHHHHHhCCc----CCCCceEEECCEEcc
Confidence 4789999999953 47999999999999 99999999999999999999999 899998533211
Q ss_pred ---------e-eeccccCCCccchhcccc-------CCCcc--------------------cccchhhHHHHHHHHHHHH
Q 005138 81 ---------I-WMARCAGIEPCTLIMDLE-------GTDGR--------------------ERGEDDTAFEKQSALFALA 123 (712)
Q Consensus 81 ---------i-~~~~~~~~~~~~~v~d~~-------g~~~~--------------------~r~~~~~~ferQrv~~A~A 123 (712)
+ ++.......+...+.+.. +.... ......+..|+||+++|+|
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 150 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARA 150 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHH
Confidence 1 011110111111111111 11100 0011123349999999999
Q ss_pred HH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEe
Q 005138 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (712)
Q Consensus 124 la---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~ 195 (712)
++ ++||+||||++||+.. ...+.+.+.++.++ |.|+|+||||++.+...|++++++.+ |+++..
T Consensus 151 l~~~p~illlDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tii~~tH~~~~~~~~~d~i~~l~~-G~i~~~ 217 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMA------TRALREFIRQLRAL-GKCILFSTHIMQEVERLCDRVVVLHR-GRVVYE 217 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhcCEEEEEEC-CEEeec
Confidence 99 9999999999999998 99999999998654 89999999999988888999999988 998764
No 73
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=4.2e-25 Score=234.97 Aligned_cols=177 Identities=15% Similarity=0.155 Sum_probs=135.4
Q ss_pred cEEEEeeeeeecc------ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee
Q 005138 9 STQLIDGDGTFNV------SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW 82 (712)
Q Consensus 9 ~I~l~~l~k~y~~------~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~ 82 (712)
||++.|+++.|+. .+++++++++..|+ +++|+||||||||||+++|+|+. +|++|++... |..
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge------~v~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~-g~~ 69 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGS------YTALIGHTGSGKSTLLQHLNGLL----QPTEGKVTVG-DIV 69 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCC------EEEEECCCCChHHHHHHHHhcCC----CCCCcEEEEC-CEE
Confidence 4899999999952 37999999999999 99999999999999999999999 8999984322 110
Q ss_pred e------------ccccCC--Cc---c---chhcc-------------------------ccCCCc---ccccchhhHHH
Q 005138 83 M------------ARCAGI--EP---C---TLIMD-------------------------LEGTDG---RERGEDDTAFE 114 (712)
Q Consensus 83 ~------------~~~~~~--~~---~---~~v~d-------------------------~~g~~~---~~r~~~~~~fe 114 (712)
+ ...+++ .+ . ..+.+ ..|+.. .......+..|
T Consensus 70 i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq 149 (288)
T PRK13643 70 VSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQ 149 (288)
T ss_pred CccccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHH
Confidence 0 001110 00 0 01111 112210 01112234459
Q ss_pred HHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCe
Q 005138 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (712)
Q Consensus 115 rQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~ 191 (712)
+||++||++++ ++|||||||++||+.. +..+.+.+.++.+. |.|||+||||++.+...|++++++.+ |+
T Consensus 150 kqrvaiA~aL~~~p~illLDEPt~gLD~~~------~~~l~~~l~~l~~~-g~til~vtHd~~~~~~~~dri~~l~~-G~ 221 (288)
T PRK13643 150 MRRVAIAGILAMEPEVLVLDEPTAGLDPKA------RIEMMQLFESIHQS-GQTVVLVTHLMDDVADYADYVYLLEK-GH 221 (288)
T ss_pred HHHHHHHHHHHhCCCEEEEECCccCCCHHH------HHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEEC-CE
Confidence 99999999999 9999999999999998 99999999998764 89999999999999888999999988 99
Q ss_pred EEEecCcccccCC
Q 005138 192 IWDSVPKPQAHME 204 (712)
Q Consensus 192 I~~~g~~~e~~~~ 204 (712)
++..|++.+.+..
T Consensus 222 i~~~g~~~~~~~~ 234 (288)
T PRK13643 222 IISCGTPSDVFQE 234 (288)
T ss_pred EEEECCHHHHHcC
Confidence 9999998776543
No 74
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.91 E-value=6e-25 Score=230.03 Aligned_cols=178 Identities=14% Similarity=0.125 Sum_probs=133.4
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-------
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------- 80 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g------- 80 (712)
+|++.|+++.|+ ..++++++++++.|+ +++|+|||||||||||++|+|+. +|++|++...+.
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge------~~~i~G~nGsGKSTLl~~i~G~~----~p~~G~i~~~g~~~~~~~~ 71 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGE------VVAILGPNGAGKSTLLRALSGEL----SPDSGEVRLNGRPLADWSP 71 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCCEEEECCEEcccCCH
Confidence 589999999995 457999999999999 99999999999999999999998 899998543211
Q ss_pred ------e-eeccccCCCccchhcccc-------------------------CCCc--ccccchhhHHHHHHHHHHHHHH-
Q 005138 81 ------I-WMARCAGIEPCTLIMDLE-------------------------GTDG--RERGEDDTAFEKQSALFALAVS- 125 (712)
Q Consensus 81 ------i-~~~~~~~~~~~~~v~d~~-------------------------g~~~--~~r~~~~~~ferQrv~~A~Ala- 125 (712)
+ ++...........+.+.. |+.. .......+..|+||++||+|++
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~ 151 (258)
T PRK13548 72 AELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQ 151 (258)
T ss_pred HHhhhheEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 0 011110010111121211 0000 0001112334999999999998
Q ss_pred --------HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecC
Q 005138 126 --------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (712)
Q Consensus 126 --------~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~ 197 (712)
++|||||||++||+.. ...+.+.+.++.++.|.|||++|||++.+...|++++++.+ |+++..|+
T Consensus 152 ~~~~~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~-G~i~~~~~ 224 (258)
T PRK13548 152 LWEPDGPPRWLLLDEPTSALDLAH------QHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQ-GRLVADGT 224 (258)
T ss_pred ccccCCCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEEC-CEEEeeCC
Confidence 7999999999999998 99999999998734589999999999998888999999988 99998887
Q ss_pred cccccC
Q 005138 198 KPQAHM 203 (712)
Q Consensus 198 ~~e~~~ 203 (712)
+.+...
T Consensus 225 ~~~~~~ 230 (258)
T PRK13548 225 PAEVLT 230 (258)
T ss_pred HHHHhC
Confidence 665543
No 75
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.91 E-value=5.3e-25 Score=223.97 Aligned_cols=166 Identities=14% Similarity=0.191 Sum_probs=124.2
Q ss_pred cEEEEeeeeeecc---ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee--
Q 005138 9 STQLIDGDGTFNV---SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW-- 82 (712)
Q Consensus 9 ~I~l~~l~k~y~~---~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~-- 82 (712)
||++.|+++.|+. .+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+. +.
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~ 70 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGE------MVFLVGHSGAGKSTFLKLILGIE----KPTRGKIRFNGQDLTRL 70 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEehhhc
Confidence 4899999999942 47999999999999 99999999999999999999999 899998533211 00
Q ss_pred -------eccccCC-------Cccchhcccc-------CCCcc--------------------cccchhhHHHHHHHHHH
Q 005138 83 -------MARCAGI-------EPCTLIMDLE-------GTDGR--------------------ERGEDDTAFEKQSALFA 121 (712)
Q Consensus 83 -------~~~~~~~-------~~~~~v~d~~-------g~~~~--------------------~r~~~~~~ferQrv~~A 121 (712)
+.+.+++ .+...+.+.. +.... ......+..|+||+++|
T Consensus 71 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 150 (216)
T TIGR00960 71 RGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIA 150 (216)
T ss_pred ChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHH
Confidence 0011111 1111111110 11100 01112234499999999
Q ss_pred HHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeE
Q 005138 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (712)
Q Consensus 122 ~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I 192 (712)
+|++ ++||+||||++||+.. ...+.+.+.++.++ |.|+|+||||++.+...|++++++.+ |++
T Consensus 151 ral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~-G~i 216 (216)
T TIGR00960 151 RAIVHKPPLLLADEPTGNLDPEL------SRDIMRLFEEFNRR-GTTVLVATHDINLVETYRHRTLTLSR-GRL 216 (216)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeC-CcC
Confidence 9999 9999999999999998 99999999998654 89999999999998888999998888 764
No 76
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=5.8e-25 Score=232.25 Aligned_cols=174 Identities=16% Similarity=0.189 Sum_probs=132.8
Q ss_pred ccEEEEeeeeeec--cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee---
Q 005138 8 CSTQLIDGDGTFN--VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW--- 82 (712)
Q Consensus 8 ~~I~l~~l~k~y~--~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~--- 82 (712)
++|++.|+++.|. ..+++++++++..|+ +++|+||||||||||+++|+|+. +|++|++...+...
T Consensus 3 ~~l~~~~l~~~~~~~~~~l~~isl~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~ 72 (274)
T PRK13647 3 NIIEVEDLHFRYKDGTKALKGLSLSIPEGS------KTALLGPNGAGKSTLLLHLNGIY----LPQRGRVKVMGREVNAE 72 (274)
T ss_pred ceEEEEEEEEEeCCCCeeeeeEEEEEcCCC------EEEEECCCCCcHHHHHHHHhcCC----CCCceEEEECCEECCCC
Confidence 4799999999994 357999999999999 99999999999999999999999 89999854322100
Q ss_pred ----eccccCC--Cc------cchhcccc-------CCCcc--------------------cccchhhHHHHHHHHHHHH
Q 005138 83 ----MARCAGI--EP------CTLIMDLE-------GTDGR--------------------ERGEDDTAFEKQSALFALA 123 (712)
Q Consensus 83 ----~~~~~~~--~~------~~~v~d~~-------g~~~~--------------------~r~~~~~~ferQrv~~A~A 123 (712)
+...+++ .+ ...+.+.. +.... ......+..|+||++||+|
T Consensus 73 ~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~lara 152 (274)
T PRK13647 73 NEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGV 152 (274)
T ss_pred CHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHH
Confidence 0011111 00 00111110 11100 0011223449999999999
Q ss_pred HH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcc
Q 005138 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (712)
Q Consensus 124 la---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~ 199 (712)
++ ++||+||||++||+.. ...+++++.++.++ |+|||++|||++.+...|++++++.+ |+++..|+++
T Consensus 153 L~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~-g~tili~tH~~~~~~~~~d~i~~l~~-G~i~~~g~~~ 223 (274)
T PRK13647 153 LAMDPDVIVLDEPMAYLDPRG------QETLMEILDRLHNQ-GKTVIVATHDVDLAAEWADQVIVLKE-GRVLAEGDKS 223 (274)
T ss_pred HHcCCCEEEEECCCcCCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEECCHH
Confidence 99 9999999999999998 99999999999765 89999999999999888999999988 9999988864
No 77
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.91 E-value=5.7e-25 Score=231.05 Aligned_cols=181 Identities=17% Similarity=0.148 Sum_probs=136.1
Q ss_pred CcccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee-
Q 005138 6 ECCSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW- 82 (712)
Q Consensus 6 ~~~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~- 82 (712)
...+|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+. +.
T Consensus 4 ~~~~l~i~~l~~~~~~~~~l~~isl~i~~Ge------~~~i~G~nGsGKSTLl~~i~G~~----~~~~G~i~~~g~~~~~ 73 (265)
T PRK10253 4 SVARLRGEQLTLGYGKYTVAENLTVEIPDGH------FTAIIGPNGCGKSTLLRTLSRLM----TPAHGHVWLDGEHIQH 73 (265)
T ss_pred cccEEEEEEEEEEECCEEEeeecceEECCCC------EEEEECCCCCCHHHHHHHHcCCC----CCCCcEEEECCEEhhh
Confidence 345799999999995 457999999999999 99999999999999999999999 899998543211 00
Q ss_pred -----eccccCC-------Cccchhcccc-----------------------------CCCc--ccccchhhHHHHHHHH
Q 005138 83 -----MARCAGI-------EPCTLIMDLE-----------------------------GTDG--RERGEDDTAFEKQSAL 119 (712)
Q Consensus 83 -----~~~~~~~-------~~~~~v~d~~-----------------------------g~~~--~~r~~~~~~ferQrv~ 119 (712)
+...+++ .....+.+.. |+.. .......+..|+||++
T Consensus 74 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~ 153 (265)
T PRK10253 74 YASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAW 153 (265)
T ss_pred CCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHH
Confidence 0001111 1111111111 0000 0000112233999999
Q ss_pred HHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEec
Q 005138 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 120 ~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g 196 (712)
||+|++ +++|+||||++||+.. ...+.+.+.++.++.|.|+|++|||++.+...|++++++.+ |+++..|
T Consensus 154 laral~~~p~llllDEPt~gLD~~~------~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~-G~i~~~g 226 (265)
T PRK10253 154 IAMVLAQETAIMLLDEPTTWLDISH------QIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALRE-GKIVAQG 226 (265)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEeC
Confidence 999999 9999999999999998 99999999998765589999999999999989999999988 9999998
Q ss_pred CcccccC
Q 005138 197 PKPQAHM 203 (712)
Q Consensus 197 ~~~e~~~ 203 (712)
++.+...
T Consensus 227 ~~~~~~~ 233 (265)
T PRK10253 227 APKEIVT 233 (265)
T ss_pred CHHHHhh
Confidence 8766543
No 78
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.91 E-value=6.5e-25 Score=223.96 Aligned_cols=174 Identities=13% Similarity=0.131 Sum_probs=129.7
Q ss_pred EEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-e------
Q 005138 10 TQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-I------ 81 (712)
Q Consensus 10 I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i------ 81 (712)
|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+. +
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~~~ 70 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGE------IVALLGRNGAGKTTLLKTIMGLL----PPRSGSIRFDGRDITGLPPH 70 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCe------EEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEEcCCCCHH
Confidence 46899999995 457999999999999 99999999999999999999999 899998532211 0
Q ss_pred -eeccccCC-------Cccchhcccc-------CCCc-c------------------cccchhhHHHHHHHHHHHHHH--
Q 005138 82 -WMARCAGI-------EPCTLIMDLE-------GTDG-R------------------ERGEDDTAFEKQSALFALAVS-- 125 (712)
Q Consensus 82 -~~~~~~~~-------~~~~~v~d~~-------g~~~-~------------------~r~~~~~~ferQrv~~A~Ala-- 125 (712)
.....+++ .+...+.+.. +... . ......+..|+||+++|+|++
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 150 (222)
T cd03224 71 ERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSR 150 (222)
T ss_pred HHHhcCeEEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcC
Confidence 00011111 1111111100 0000 0 000112334999999999999
Q ss_pred -HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccc
Q 005138 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (712)
Q Consensus 126 -~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~ 201 (712)
++||+||||++||+.. ...+++.+.++.+ .|.|+|++|||++.+...|++++++.+ |++...+++.+.
T Consensus 151 p~llllDEPt~~LD~~~------~~~l~~~l~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~-G~i~~~~~~~~~ 219 (222)
T cd03224 151 PKLLLLDEPSEGLAPKI------VEEIFEAIRELRD-EGVTILLVEQNARFALEIADRAYVLER-GRVVLEGTAAEL 219 (222)
T ss_pred CCEEEECCCcccCCHHH------HHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHhccEEEEeeC-CeEEEeCCHHHH
Confidence 9999999999999998 9999999999876 489999999999998888999999988 999988765443
No 79
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=6.3e-25 Score=230.69 Aligned_cols=187 Identities=16% Similarity=0.103 Sum_probs=138.4
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC-------
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~------- 79 (712)
.+|++.|+++.|+ ..++++++|++..|+ +++|+||||||||||+++|+|+. +|++|++...+
T Consensus 10 ~~l~i~~l~~~~~~~~il~~vs~~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~ 79 (265)
T PRK10575 10 TTFALRNVSFRVPGRTLLHPLSLTFPAGK------VTGLIGHNGSGKSTLLKMLGRHQ----PPSEGEILLDAQPLESWS 79 (265)
T ss_pred ceEEEeeEEEEECCEEEEeeeeeEEcCCC------EEEEECCCCCCHHHHHHHHcCCC----CCCCCEEEECCEehhhCC
Confidence 4799999999994 457999999999999 99999999999999999999998 89999854321
Q ss_pred ------Cee-eccccCCCccchhccccCC-----------Ccc--------------------cccchhhHHHHHHHHHH
Q 005138 80 ------GIW-MARCAGIEPCTLIMDLEGT-----------DGR--------------------ERGEDDTAFEKQSALFA 121 (712)
Q Consensus 80 ------gi~-~~~~~~~~~~~~v~d~~g~-----------~~~--------------------~r~~~~~~ferQrv~~A 121 (712)
++. +.......+...+.+.... ... ......+..|+||++||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la 159 (265)
T PRK10575 80 SKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIA 159 (265)
T ss_pred HHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHH
Confidence 111 1111011111111111000 000 00011233499999999
Q ss_pred HHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCc
Q 005138 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (712)
Q Consensus 122 ~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~ 198 (712)
+|++ ++|||||||++||+.. ...+.+++.++.+..|.|||++||+++.+...|++++++.+ |+++..|++
T Consensus 160 ral~~~p~lllLDEPt~~LD~~~------~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~-G~i~~~~~~ 232 (265)
T PRK10575 160 MLVAQDSRCLLLDEPTSALDIAH------QVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRG-GEMIAQGTP 232 (265)
T ss_pred HHHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CeEEEecCH
Confidence 9999 9999999999999998 99999999998765589999999999999888999999988 999988887
Q ss_pred ccccCCccchhhh
Q 005138 199 PQAHMETPLSEFF 211 (712)
Q Consensus 199 ~e~~~~~~l~d~f 211 (712)
.+......+..+|
T Consensus 233 ~~~~~~~~~~~~~ 245 (265)
T PRK10575 233 AELMRGETLEQIY 245 (265)
T ss_pred HHhcCHHHHHHHh
Confidence 6655433334444
No 80
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.91 E-value=8.1e-25 Score=213.68 Aligned_cols=158 Identities=16% Similarity=0.156 Sum_probs=124.3
Q ss_pred EEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccccC
Q 005138 10 TQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG 88 (712)
Q Consensus 10 I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~~~ 88 (712)
|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+ ......
T Consensus 1 l~~~~l~~~~~~~~vl~~i~~~i~~Ge------~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g-~~~~~~-- 67 (163)
T cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGE------VHALLGENGAGKSTLMKILSGLY----KPDSGEILVDG-KEVSFA-- 67 (163)
T ss_pred CEEEEEEEEECCeEEEeeeEEEEeCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECC-EECCcC--
Confidence 46899999995 357999999999999 99999999999999999999999 88888753322 111100
Q ss_pred CCccchhccccCCCcccccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCce
Q 005138 89 IEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTT 165 (712)
Q Consensus 89 ~~~~~~v~d~~g~~~~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~t 165 (712)
..........+. ....+..|+||+++|+|++ +++|+||||++||+.. .+.+.+.++++.++ |.|
T Consensus 68 -~~~~~~~~~i~~-----~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~------~~~l~~~l~~~~~~-~~t 134 (163)
T cd03216 68 -SPRDARRAGIAM-----VYQLSVGERQMVEIARALARNARLLILDEPTAALTPAE------VERLFKVIRRLRAQ-GVA 134 (163)
T ss_pred -CHHHHHhcCeEE-----EEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHH------HHHHHHHHHHHHHC-CCE
Confidence 000000000000 0015678999999999999 9999999999999998 99999999998654 899
Q ss_pred EEEEecCCCCcccccccccceecCCeEEE
Q 005138 166 LMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (712)
Q Consensus 166 iL~VtHDl~~~~~~~~~~~ll~~~G~I~~ 194 (712)
+|++|||++.+...|++++++.+ |+++.
T Consensus 135 iii~sh~~~~~~~~~d~~~~l~~-g~i~~ 162 (163)
T cd03216 135 VIFISHRLDEVFEIADRVTVLRD-GRVVG 162 (163)
T ss_pred EEEEeCCHHHHHHhCCEEEEEEC-CEEEe
Confidence 99999999988888999999988 99864
No 81
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.1e-24 Score=227.78 Aligned_cols=175 Identities=15% Similarity=0.194 Sum_probs=131.2
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-------
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------- 80 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g------- 80 (712)
||++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+.
T Consensus 1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~~ 70 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGE------LLVVLGPSGCGKTTLLNLIAGFV----PYQHGSITLDGKPVEGPGA 70 (255)
T ss_pred CEEEEEEEEEeCCeeeEeeeeEEECCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCCCCC
Confidence 489999999995 357999999999999 99999999999999999999999 899998543210
Q ss_pred -e-eeccccCCCccchhccc-------cCCCcc--------------------cccchhhHHHHHHHHHHHHHH---HHh
Q 005138 81 -I-WMARCAGIEPCTLIMDL-------EGTDGR--------------------ERGEDDTAFEKQSALFALAVS---DIV 128 (712)
Q Consensus 81 -i-~~~~~~~~~~~~~v~d~-------~g~~~~--------------------~r~~~~~~ferQrv~~A~Ala---~iL 128 (712)
+ ++.......+...+.+. .+.... ......+..|+||+++|+|++ ++|
T Consensus 71 ~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~ll 150 (255)
T PRK11248 71 ERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLL 150 (255)
T ss_pred cEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 0 11111111111111111 011100 011122344999999999999 999
Q ss_pred hhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceec-CCeEEEecCcc
Q 005138 129 LINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED-IQKIWDSVPKP 199 (712)
Q Consensus 129 lLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~-~G~I~~~g~~~ 199 (712)
||||||++||+.. ...+.+.+.++.++.|+|+|+||||++.+...|++++++.+ .|+++..++.+
T Consensus 151 lLDEPt~~LD~~~------~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 151 LLDEPFGALDAFT------REQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred EEeCCCccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 9999999999998 99999999998654589999999999999888999999873 59998887643
No 82
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=5e-25 Score=232.22 Aligned_cols=178 Identities=15% Similarity=0.065 Sum_probs=134.3
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee----
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW---- 82 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~---- 82 (712)
||++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+. +.
T Consensus 1 ml~~~~l~~~~~~~~il~~isl~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~i~~~~~ 70 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSP------VTGLVGANGCGKSTLFMNLSGLL----RPQKGAVLWQGKPLDYSKR 70 (271)
T ss_pred CeEEEEEEEEcCCcccccceEEEEcCCC------EEEEECCCCCCHHHHHHHHcCCC----CCCccEEEECCEEcccccC
Confidence 489999999995 457999999999999 99999999999999999999999 899998532211 10
Q ss_pred ----eccccCC---Cc-----cchhcc-------ccCCCccc--------------------ccchhhHHHHHHHHHHHH
Q 005138 83 ----MARCAGI---EP-----CTLIMD-------LEGTDGRE--------------------RGEDDTAFEKQSALFALA 123 (712)
Q Consensus 83 ----~~~~~~~---~~-----~~~v~d-------~~g~~~~~--------------------r~~~~~~ferQrv~~A~A 123 (712)
....+++ .+ ...+.+ ..+..... .....+..|+||++||+|
T Consensus 71 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~lara 150 (271)
T PRK13638 71 GLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGA 150 (271)
T ss_pred CHHHHHhheEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHH
Confidence 0011111 00 000111 01111100 011223449999999999
Q ss_pred HH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCccc
Q 005138 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (712)
Q Consensus 124 la---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e 200 (712)
++ ++|||||||++||+.. ...+.+.+.++.++ |.|||+||||++.+...|++++++.+ |+++..|++.+
T Consensus 151 L~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~d~i~~l~~-G~i~~~g~~~~ 222 (271)
T PRK13638 151 LVLQARYLLLDEPTAGLDPAG------RTQMIAIIRRIVAQ-GNHVIISSHDIDLIYEISDAVYVLRQ-GQILTHGAPGE 222 (271)
T ss_pred HHcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEeCCHHH
Confidence 99 9999999999999998 99999999998754 89999999999999888999999988 99999998766
Q ss_pred ccCC
Q 005138 201 AHME 204 (712)
Q Consensus 201 ~~~~ 204 (712)
.+..
T Consensus 223 ~~~~ 226 (271)
T PRK13638 223 VFAC 226 (271)
T ss_pred HhcC
Confidence 5543
No 83
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.91 E-value=7.6e-25 Score=226.48 Aligned_cols=177 Identities=17% Similarity=0.184 Sum_probs=132.9
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-e-----
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-I----- 81 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i----- 81 (712)
||++.|+++.|+ ..+++++++++..|+ +++|+||||||||||+++|+|+. +|++|++...+. +
T Consensus 1 ~l~~~~l~~~~~~~~il~~~s~~i~~Ge------~~~l~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~ 70 (240)
T PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGE------VVVIIGPSGSGKSTLLRCINKLE----EITSGDLIVDGLKVNDPKV 70 (240)
T ss_pred CEEEEeEEEEECCeEEeeeeeEEEcCCc------EEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEECCcCCh
Confidence 488999999995 457999999999999 99999999999999999999998 899998532211 0
Q ss_pred ---eeccccC-------CCccchhcccc--------CCCcc--------------------cccchhhHHHHHHHHHHHH
Q 005138 82 ---WMARCAG-------IEPCTLIMDLE--------GTDGR--------------------ERGEDDTAFEKQSALFALA 123 (712)
Q Consensus 82 ---~~~~~~~-------~~~~~~v~d~~--------g~~~~--------------------~r~~~~~~ferQrv~~A~A 123 (712)
.+...++ ..+...+.+.. +.... ......+..|+||++||+|
T Consensus 71 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~a 150 (240)
T PRK09493 71 DERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARA 150 (240)
T ss_pred hHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHH
Confidence 0000111 11111111111 10000 0001123349999999999
Q ss_pred HH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCccc
Q 005138 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (712)
Q Consensus 124 la---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e 200 (712)
++ +++|+||||++||+.. +..+.+++.++.++ |+|+|++|||++.+...|++++++.+ |+++..|++.+
T Consensus 151 l~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~-G~i~~~g~~~~ 222 (240)
T PRK09493 151 LAVKPKLMLFDEPTSALDPEL------RHEVLKVMQDLAEE-GMTMVIVTHEIGFAEKVASRLIFIDK-GRIAEDGDPQV 222 (240)
T ss_pred HhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEeeCCHHH
Confidence 99 9999999999999998 99999999998754 89999999999999888999999988 99998887665
Q ss_pred ccC
Q 005138 201 AHM 203 (712)
Q Consensus 201 ~~~ 203 (712)
...
T Consensus 223 ~~~ 225 (240)
T PRK09493 223 LIK 225 (240)
T ss_pred Hhc
Confidence 543
No 84
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.91 E-value=6.8e-25 Score=237.53 Aligned_cols=181 Identities=11% Similarity=0.081 Sum_probs=137.8
Q ss_pred cccEEEEeeeeeec--------------cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCC
Q 005138 7 CCSTQLIDGDGTFN--------------VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFK 72 (712)
Q Consensus 7 ~~~I~l~~l~k~y~--------------~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~s 72 (712)
.++|++.|+++.|. ..++++++++|..|+ +++|+|+||||||||+++|+|+. +|++
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge------~~~lvG~sGsGKSTLlk~i~Gl~----~p~~ 75 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGE------TLGVVGESGCGKSTFARAIIGLV----KATD 75 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCC------EEEEECCCCCCHHHHHHHHHCCC----CCCC
Confidence 35799999999994 236899999999999 99999999999999999999999 8999
Q ss_pred CeeeccCC-ee---------eccccC---------CCccchhccc-------c--CCCcc--------------------
Q 005138 73 GRSQTTKG-IW---------MARCAG---------IEPCTLIMDL-------E--GTDGR-------------------- 104 (712)
Q Consensus 73 G~~~~t~g-i~---------~~~~~~---------~~~~~~v~d~-------~--g~~~~-------------------- 104 (712)
|++...+. +. +.+.++ ..+...+.+. . +....
T Consensus 76 G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~ 155 (331)
T PRK15079 76 GEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLI 155 (331)
T ss_pred cEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHh
Confidence 98533211 00 001111 1111111111 0 11110
Q ss_pred -cccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccc
Q 005138 105 -ERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN 180 (712)
Q Consensus 105 -~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~ 180 (712)
......+..|+||++||+|++ ++||+||||++||+.. +..+++++.++.++.|.|+||||||++.+..+|
T Consensus 156 ~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~------~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~ 229 (331)
T PRK15079 156 NRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSI------QAQVVNLLQQLQREMGLSLIFIAHDLAVVKHIS 229 (331)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhC
Confidence 011122344999999999999 9999999999999998 999999999997666999999999999999899
Q ss_pred ccccceecCCeEEEecCcccccCC
Q 005138 181 LEPVLREDIQKIWDSVPKPQAHME 204 (712)
Q Consensus 181 ~~~~ll~~~G~I~~~g~~~e~~~~ 204 (712)
+++++|.+ |+|+..|++.+++.+
T Consensus 230 dri~vl~~-G~ive~g~~~~i~~~ 252 (331)
T PRK15079 230 DRVLVMYL-GHAVELGTYDEVYHN 252 (331)
T ss_pred CEEEEEEC-CEEEEEcCHHHHHcC
Confidence 99999988 999999987766543
No 85
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=6.3e-25 Score=233.80 Aligned_cols=179 Identities=14% Similarity=0.176 Sum_probs=137.3
Q ss_pred cEEEEeeeeeecc------ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-e
Q 005138 9 STQLIDGDGTFNV------SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-I 81 (712)
Q Consensus 9 ~I~l~~l~k~y~~------~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i 81 (712)
.|++.|+++.|+. .+|+++++++..|+ +++|+||||||||||+++|+|+. +|++|++...+. +
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~i 71 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGS------YVAIIGHTGSGKSTLLQHLNGLL----QPTSGTVTIGERVI 71 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCC------EEEEECCCCCcHHHHHHHHhcCC----CCCCcEEEECCEEC
Confidence 4899999999952 47999999999999 99999999999999999999999 899998532211 0
Q ss_pred e----------eccccCC--Cc------cchh-------------------------ccccCCC-c--ccccchhhHHHH
Q 005138 82 W----------MARCAGI--EP------CTLI-------------------------MDLEGTD-G--RERGEDDTAFEK 115 (712)
Q Consensus 82 ~----------~~~~~~~--~~------~~~v-------------------------~d~~g~~-~--~~r~~~~~~fer 115 (712)
. ....+++ .+ ...+ ++..|+. . .......+..|+
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~ 151 (290)
T PRK13634 72 TAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQM 151 (290)
T ss_pred ccccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHH
Confidence 0 0001111 00 0011 1111222 1 111223345599
Q ss_pred HHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeE
Q 005138 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (712)
Q Consensus 116 Qrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I 192 (712)
||++||+|++ ++||+||||++||+.. ...+++++.++.++.|.|||+||||++.+...|++++++.+ |++
T Consensus 152 qrv~lAraL~~~P~llllDEPt~~LD~~~------~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~-G~i 224 (290)
T PRK13634 152 RRVAIAGVLAMEPEVLVLDEPTAGLDPKG------RKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHK-GTV 224 (290)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEE
Confidence 9999999999 9999999999999998 99999999999765689999999999999888999999988 999
Q ss_pred EEecCcccccCC
Q 005138 193 WDSVPKPQAHME 204 (712)
Q Consensus 193 ~~~g~~~e~~~~ 204 (712)
+..|++.+++..
T Consensus 225 ~~~g~~~~~~~~ 236 (290)
T PRK13634 225 FLQGTPREIFAD 236 (290)
T ss_pred EEECCHHHHhcC
Confidence 999987776544
No 86
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=9.2e-25 Score=236.14 Aligned_cols=182 Identities=12% Similarity=0.144 Sum_probs=135.5
Q ss_pred cEEEEeeeeeecc-----ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee
Q 005138 9 STQLIDGDGTFNV-----SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW 82 (712)
Q Consensus 9 ~I~l~~l~k~y~~-----~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~ 82 (712)
+|++.|+++.|.. .+|++|+|++..|+ +++|+|+||||||||+++|+|+.-....|++|++...+. +.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge------~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~ 76 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGE------VVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQ 76 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCC------EEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECC
Confidence 6999999999953 47999999999999 999999999999999999999981100136777432211 00
Q ss_pred -e---------ccccC---------CCccchh--------------------------ccccCCCcc-----cccchhhH
Q 005138 83 -M---------ARCAG---------IEPCTLI--------------------------MDLEGTDGR-----ERGEDDTA 112 (712)
Q Consensus 83 -~---------~~~~~---------~~~~~~v--------------------------~d~~g~~~~-----~r~~~~~~ 112 (712)
+ ...++ ..+...+ ++..|+... ......+.
T Consensus 77 ~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSg 156 (326)
T PRK11022 77 RISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSG 156 (326)
T ss_pred cCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 0 00011 1111111 011122110 01122345
Q ss_pred HHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecC
Q 005138 113 FEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDI 189 (712)
Q Consensus 113 ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~ 189 (712)
+|+||++||+|++ ++||+||||++||+.. +..+++++.++.++.|.|+||||||++.+...|+++++|.+
T Consensus 157 Gq~QRv~iArAL~~~P~llilDEPts~LD~~~------~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~- 229 (326)
T PRK11022 157 GMSQRVMIAMAIACRPKLLIADEPTTALDVTI------QAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYA- 229 (326)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-
Confidence 5999999999999 9999999999999998 99999999999876699999999999999888999999988
Q ss_pred CeEEEecCcccccC
Q 005138 190 QKIWDSVPKPQAHM 203 (712)
Q Consensus 190 G~I~~~g~~~e~~~ 203 (712)
|+|+..|++.+++.
T Consensus 230 G~ive~g~~~~~~~ 243 (326)
T PRK11022 230 GQVVETGKAHDIFR 243 (326)
T ss_pred CEEEEECCHHHHhh
Confidence 99999998877654
No 87
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.91 E-value=9.3e-25 Score=222.65 Aligned_cols=172 Identities=13% Similarity=0.177 Sum_probs=128.5
Q ss_pred EEEEeeeeeec---cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee---
Q 005138 10 TQLIDGDGTFN---VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW--- 82 (712)
Q Consensus 10 I~l~~l~k~y~---~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~--- 82 (712)
|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+. +.
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~ 70 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGE------IFGLLGHNGAGKTTTLKMLTGEL----RPTSGTAYINGYSIRTDR 70 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCc------EEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEecccch
Confidence 47899999995 357999999999999 99999999999999999999999 899998532211 00
Q ss_pred --eccccC-------CCccchhccc-------cCCCccc--------------------ccchhhHHHHHHHHHHHHHH-
Q 005138 83 --MARCAG-------IEPCTLIMDL-------EGTDGRE--------------------RGEDDTAFEKQSALFALAVS- 125 (712)
Q Consensus 83 --~~~~~~-------~~~~~~v~d~-------~g~~~~~--------------------r~~~~~~ferQrv~~A~Ala- 125 (712)
+...++ ..+...+.+. .+..... .....+..|+||++||+|++
T Consensus 71 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~ 150 (220)
T cd03263 71 KAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIG 150 (220)
T ss_pred HHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhc
Confidence 000111 1111111111 1111000 00112334999999999999
Q ss_pred --HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCccc
Q 005138 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (712)
Q Consensus 126 --~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e 200 (712)
++||+||||++||+.. ...+.+.+.++.+ +.|+|++|||++.+...|++++++.+ |+++..|++++
T Consensus 151 ~p~llllDEP~~~LD~~~------~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~-g~i~~~~~~~~ 218 (220)
T cd03263 151 GPSVLLLDEPTSGLDPAS------RRAIWDLILEVRK--GRSIILTTHSMDEAEALCDRIAIMSD-GKLRCIGSPQE 218 (220)
T ss_pred CCCEEEECCCCCCCCHHH------HHHHHHHHHHHhc--CCEEEEEcCCHHHHHHhcCEEEEEEC-CEEEecCCHHH
Confidence 9999999999999998 9999999999864 58999999999998888999999988 99998887543
No 88
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=8.6e-25 Score=231.25 Aligned_cols=179 Identities=13% Similarity=0.151 Sum_probs=135.9
Q ss_pred ccEEEEeeeeeec-c-ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee---
Q 005138 8 CSTQLIDGDGTFN-V-SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW--- 82 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~-~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~--- 82 (712)
.++++.|+++.|. . .+++++++++..|+ +++|+|+||||||||+++|+|+. +|++|++...+...
T Consensus 2 ~~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge------~~~i~G~NGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~ 71 (277)
T PRK13652 2 HLIETRDLCYSYSGSKEALNNINFIAPRNS------RIAVIGPNGAGKSTLFRHFNGIL----KPTSGSVLIRGEPITKE 71 (277)
T ss_pred ceEEEEEEEEEeCCCCceeeEeEEEEcCCC------EEEEECCCCCCHHHHHHHHhcCC----CCCceEEEECCEECCcC
Confidence 4699999999994 3 47999999999999 99999999999999999999999 89999853221100
Q ss_pred ----eccccCC---Cc-----cchhcccc-------CCCc--------------------ccccchhhHHHHHHHHHHHH
Q 005138 83 ----MARCAGI---EP-----CTLIMDLE-------GTDG--------------------RERGEDDTAFEKQSALFALA 123 (712)
Q Consensus 83 ----~~~~~~~---~~-----~~~v~d~~-------g~~~--------------------~~r~~~~~~ferQrv~~A~A 123 (712)
+...+++ .+ ...+.+.. +.+. .......+..|+||++||+|
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~lara 151 (277)
T PRK13652 72 NIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGV 151 (277)
T ss_pred CHHHHHhheEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHH
Confidence 0000110 00 00111110 1110 00112233459999999999
Q ss_pred HH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCccc
Q 005138 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (712)
Q Consensus 124 la---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e 200 (712)
++ ++||+||||++||+.. ...+.+++.++.++.|+|+|++|||++.+...|++++++.+ |+++..|++.+
T Consensus 152 L~~~p~llilDEPt~gLD~~~------~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~-G~i~~~g~~~~ 224 (277)
T PRK13652 152 IAMEPQVLVLDEPTAGLDPQG------VKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDK-GRIVAYGTVEE 224 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEEC-CeEEEECCHHH
Confidence 99 9999999999999998 99999999998765589999999999999888999999988 99999998776
Q ss_pred ccC
Q 005138 201 AHM 203 (712)
Q Consensus 201 ~~~ 203 (712)
.+.
T Consensus 225 ~~~ 227 (277)
T PRK13652 225 IFL 227 (277)
T ss_pred Hhc
Confidence 654
No 89
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.91 E-value=9.2e-25 Score=225.04 Aligned_cols=175 Identities=14% Similarity=0.183 Sum_probs=131.2
Q ss_pred EEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC---------
Q 005138 10 TQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (712)
Q Consensus 10 I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~--------- 79 (712)
|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge------~~~l~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~~~ 70 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGE------IHGLIGPNGAGKTTLFNLISGFL----RPTSGSVLFDGEDITGLPPH 70 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCCc------EEEEECCCCCCHHHHHHHHcCCC----CCCCceEEECCEECCCCCHH
Confidence 46889999995 347999999999999 99999999999999999999999 89999853221
Q ss_pred -----Ce-eeccccCCCccchhcccc-----------------------------------CCCc--ccccchhhHHHHH
Q 005138 80 -----GI-WMARCAGIEPCTLIMDLE-----------------------------------GTDG--RERGEDDTAFEKQ 116 (712)
Q Consensus 80 -----gi-~~~~~~~~~~~~~v~d~~-----------------------------------g~~~--~~r~~~~~~ferQ 116 (712)
++ ++.......+...+.+.. |+.. .......+..|+|
T Consensus 71 ~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q 150 (236)
T cd03219 71 EIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQR 150 (236)
T ss_pred HHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHH
Confidence 11 011111111111111110 1100 0001112334999
Q ss_pred HHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEE
Q 005138 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (712)
Q Consensus 117 rv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~ 193 (712)
|+++|+|++ ++||+||||++||+.. ...+.+.+.++.+ .|+|+|+||||++.+...|++++++.+ |++.
T Consensus 151 rv~la~al~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~-G~i~ 222 (236)
T cd03219 151 RLEIARALATDPKLLLLDEPAAGLNPEE------TEELAELIRELRE-RGITVLLVEHDMDVVMSLADRVTVLDQ-GRVI 222 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEeC-CEEE
Confidence 999999999 9999999999999998 9999999999876 489999999999999888999999988 9999
Q ss_pred EecCccccc
Q 005138 194 DSVPKPQAH 202 (712)
Q Consensus 194 ~~g~~~e~~ 202 (712)
..|++.+..
T Consensus 223 ~~~~~~~~~ 231 (236)
T cd03219 223 AEGTPDEVR 231 (236)
T ss_pred eecCHHHhc
Confidence 888766554
No 90
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.91 E-value=5.3e-25 Score=235.65 Aligned_cols=167 Identities=11% Similarity=0.136 Sum_probs=125.6
Q ss_pred eec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee-----eccccC--
Q 005138 18 TFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW-----MARCAG-- 88 (712)
Q Consensus 18 ~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~-----~~~~~~-- 88 (712)
.|+ ..++++++|++..|+ +++|+||||||||||||+|+|+. +|++|++...+. +. ....++
T Consensus 2 ~y~~~~~l~~vs~~i~~Ge------~~~l~G~NGaGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~~~~~~~i~~~ 71 (302)
T TIGR01188 2 VYGDFKAVDGVNFKVREGE------VFGFLGPNGAGKTTTIRMLTTLL----RPTSGTARVAGYDVVREPRKVRRSIGIV 71 (302)
T ss_pred eeCCeeEEeeeeEEEcCCc------EEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEEcccCHHHHHhhcEEe
Confidence 453 347999999999999 99999999999999999999999 899998543221 00 001111
Q ss_pred -----CCccchhcc-------ccCCCc--------------------ccccchhhHHHHHHHHHHHHHH---HHhhhccc
Q 005138 89 -----IEPCTLIMD-------LEGTDG--------------------RERGEDDTAFEKQSALFALAVS---DIVLINMW 133 (712)
Q Consensus 89 -----~~~~~~v~d-------~~g~~~--------------------~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP 133 (712)
..+...+.+ ..|... .......+..||||++||+|++ ++||||||
T Consensus 72 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 151 (302)
T TIGR01188 72 PQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEP 151 (302)
T ss_pred cCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 111111111 111110 0111223345999999999999 99999999
Q ss_pred cCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCccccc
Q 005138 134 CHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (712)
Q Consensus 134 ~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~ 202 (712)
|+|||+.. +..+.+.+.++.++ |+|||++||+++++...|++++++.+ |+++..|++.++.
T Consensus 152 t~gLD~~~------~~~l~~~l~~~~~~-g~tvi~~sH~~~~~~~~~d~v~~l~~-G~i~~~g~~~~l~ 212 (302)
T TIGR01188 152 TTGLDPRT------RRAIWDYIRALKEE-GVTILLTTHYMEEADKLCDRIAIIDH-GRIIAEGTPEELK 212 (302)
T ss_pred CcCCCHHH------HHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEEC-CEEEEECCHHHHH
Confidence 99999999 99999999998765 99999999999999989999999988 9999999876654
No 91
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.91 E-value=4.9e-25 Score=240.77 Aligned_cols=171 Identities=16% Similarity=0.121 Sum_probs=129.5
Q ss_pred eeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC---------------
Q 005138 17 GTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG--------------- 80 (712)
Q Consensus 17 k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g--------------- 80 (712)
|.|+ ..++++++|++..|+ +++|+|||||||||||++|+|+. +|++|++...+.
T Consensus 1 ~~~~~~~~l~~vs~~i~~Ge------i~~l~G~sGsGKSTLLr~L~Gl~----~p~~G~I~i~G~~i~~~~~~~~~~~rr 70 (363)
T TIGR01186 1 KKTGGKKGVNDADLAIAKGE------IFVIMGLSGSGKSTTVRMLNRLI----EPTAGQIFIDGENIMKQSPVELREVRR 70 (363)
T ss_pred CccCCceeEEeeEEEEcCCC------EEEEECCCCChHHHHHHHHhCCC----CCCceEEEECCEECCcCCHHHHHHHHh
Confidence 3453 347899999999999 99999999999999999999999 899998543221
Q ss_pred --ee-eccccCCCccchhccc-------cCCCccc--------------------ccchhhHHHHHHHHHHHHHH---HH
Q 005138 81 --IW-MARCAGIEPCTLIMDL-------EGTDGRE--------------------RGEDDTAFEKQSALFALAVS---DI 127 (712)
Q Consensus 81 --i~-~~~~~~~~~~~~v~d~-------~g~~~~~--------------------r~~~~~~ferQrv~~A~Ala---~i 127 (712)
+- .....+..+...+.+. .|....+ .....+..|+||++||+|++ ++
T Consensus 71 ~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~i 150 (363)
T TIGR01186 71 KKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDI 150 (363)
T ss_pred CcEEEEECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 00 0011111222222111 1211110 11122344999999999999 99
Q ss_pred hhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccccCC
Q 005138 128 VLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHME 204 (712)
Q Consensus 128 LlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~~~ 204 (712)
||||||+++||+.. +..+.+.+.++.++.|+||||||||++++...|+++++|.+ |+++..|++++++.+
T Consensus 151 LLlDEP~saLD~~~------r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~-G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 151 LLMDEAFSALDPLI------RDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKA-GEIVQVGTPDEILRN 220 (363)
T ss_pred EEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeC-CEEEeeCCHHHHHhC
Confidence 99999999999998 99999999999766689999999999999999999999988 999999998877643
No 92
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=9.5e-25 Score=236.10 Aligned_cols=179 Identities=16% Similarity=0.091 Sum_probs=137.4
Q ss_pred ccEEEEeeeeeec-----------cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeee
Q 005138 8 CSTQLIDGDGTFN-----------VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ 76 (712)
Q Consensus 8 ~~I~l~~l~k~y~-----------~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~ 76 (712)
++|++.|+++.|. ..++++|+++|..|+ +++|+|+||||||||+++|+|+. +|++|++.
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge------~~~IvG~sGsGKSTLl~~l~gl~----~p~~G~i~ 73 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGK------TLAVVGESGCGKSTLARLLTMIE----TPTGGELY 73 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCC------EEEEECCCCCcHHHHHHHHHcCC----CCCCcEEE
Confidence 4699999999994 246999999999999 99999999999999999999999 88999853
Q ss_pred ccCCee----------eccccCC---------Cccchhc--------------------------cccCCCc---ccccc
Q 005138 77 TTKGIW----------MARCAGI---------EPCTLIM--------------------------DLEGTDG---RERGE 108 (712)
Q Consensus 77 ~t~gi~----------~~~~~~~---------~~~~~v~--------------------------d~~g~~~---~~r~~ 108 (712)
..+.-. +.+.+++ .+...+. +..|+.. .....
T Consensus 74 ~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~ 153 (327)
T PRK11308 74 YQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPH 153 (327)
T ss_pred ECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCc
Confidence 322100 0011111 1111110 0111110 00112
Q ss_pred hhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccc
Q 005138 109 DDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVL 185 (712)
Q Consensus 109 ~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~l 185 (712)
..+..|+||++||+|++ ++||+||||++||+.. +..+++++.++.++.|+|+||||||++.+...|+++++
T Consensus 154 ~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~------~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~v 227 (327)
T PRK11308 154 MFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSV------QAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMV 227 (327)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHH------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 23445999999999999 9999999999999998 99999999999876699999999999999889999999
Q ss_pred eecCCeEEEecCcccccC
Q 005138 186 REDIQKIWDSVPKPQAHM 203 (712)
Q Consensus 186 l~~~G~I~~~g~~~e~~~ 203 (712)
|.+ |+|+..|++.+++.
T Consensus 228 m~~-G~ive~g~~~~~~~ 244 (327)
T PRK11308 228 MYL-GRCVEKGTKEQIFN 244 (327)
T ss_pred EEC-CEEEEECCHHHHhc
Confidence 998 99999998877654
No 93
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.91 E-value=1.4e-24 Score=224.60 Aligned_cols=176 Identities=13% Similarity=0.101 Sum_probs=132.5
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee-----
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW----- 82 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~----- 82 (712)
+|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+.-.
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge------~~~l~G~nGsGKSTLl~~l~G~~----~p~~G~i~~~g~~~~~~~~ 71 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPGE------LRVIIGPNGAGKTTMMDVITGKT----RPDEGSVLFGGTDLTGLPE 71 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCCc------EEEEECCCCCCHHHHHHHHhCCC----CCCCCeEEECCeecCCCCH
Confidence 589999999995 457999999999999 99999999999999999999998 89999843221100
Q ss_pred ---eccccC-------CCccchhcccc---------------------------------CCCc--ccccchhhHHHHHH
Q 005138 83 ---MARCAG-------IEPCTLIMDLE---------------------------------GTDG--RERGEDDTAFEKQS 117 (712)
Q Consensus 83 ---~~~~~~-------~~~~~~v~d~~---------------------------------g~~~--~~r~~~~~~ferQr 117 (712)
....++ ..+...+.+.. |+.. .......+..|+||
T Consensus 72 ~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qr 151 (242)
T TIGR03411 72 HQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQW 151 (242)
T ss_pred HHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH
Confidence 000111 11111111100 1100 00011123349999
Q ss_pred HHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEE
Q 005138 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (712)
Q Consensus 118 v~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~ 194 (712)
++||+|++ ++||+||||++||+.. ...+.+.+.++.+ +.|+|+|||+++.+...|++++++.+ |++..
T Consensus 152 v~laral~~~p~~lllDEPt~~LD~~~------~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~-g~~~~ 222 (242)
T TIGR03411 152 LEIGMLLMQDPKLLLLDEPVAGMTDEE------TEKTAELLKSLAG--KHSVVVVEHDMEFVRSIADKVTVLHQ-GSVLA 222 (242)
T ss_pred HHHHHHHhcCCCEEEecCCccCCCHHH------HHHHHHHHHHHhc--CCEEEEEECCHHHHHHhCCEEEEEEC-CeEEe
Confidence 99999999 9999999999999999 9999999999864 68999999999999888999999988 99998
Q ss_pred ecCcccccC
Q 005138 195 SVPKPQAHM 203 (712)
Q Consensus 195 ~g~~~e~~~ 203 (712)
.|++.+...
T Consensus 223 ~~~~~~~~~ 231 (242)
T TIGR03411 223 EGSLDQVQA 231 (242)
T ss_pred eCCHHHHhc
Confidence 888766543
No 94
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=9.7e-25 Score=241.13 Aligned_cols=179 Identities=15% Similarity=0.185 Sum_probs=135.4
Q ss_pred ccEEEEeeeeeeccc-------------------------cccccccccccccccccccEEEEEcCCCCChhHHHHHHhc
Q 005138 8 CSTQLIDGDGTFNVS-------------------------GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFG 62 (712)
Q Consensus 8 ~~I~l~~l~k~y~~~-------------------------~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~G 62 (712)
.+|++.|++|.|+.. ++++++|+++.|+ +++|+||||||||||||+|+|
T Consensus 3 ~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Ge------i~~LvG~NGsGKSTLLr~I~G 76 (400)
T PRK10070 3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGE------IFVIMGLSGSGKSTMVRLLNR 76 (400)
T ss_pred cEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCC------EEEEECCCCchHHHHHHHHHc
Confidence 469999999999532 5899999999999 999999999999999999999
Q ss_pred cccCccCCCCCeeeccC-----------------Ce-eeccccCCCccchhcc-------ccCCCcc-------------
Q 005138 63 TNFREMDAFKGRSQTTK-----------------GI-WMARCAGIEPCTLIMD-------LEGTDGR------------- 104 (712)
Q Consensus 63 l~f~~m~p~sG~~~~t~-----------------gi-~~~~~~~~~~~~~v~d-------~~g~~~~------------- 104 (712)
+. +|++|++...+ ++ ++.......+...+.+ ..|....
T Consensus 77 l~----~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~ 152 (400)
T PRK10070 77 LI----EPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQV 152 (400)
T ss_pred CC----CCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc
Confidence 99 89999853221 11 0111111111111111 1111110
Q ss_pred -------cccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCC
Q 005138 105 -------ERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKT 174 (712)
Q Consensus 105 -------~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~ 174 (712)
......+..|+||++||+|++ ++|||||||++||+.. +..+.+.+.++.++.|+||||||||++
T Consensus 153 gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~------r~~l~~~L~~l~~~~g~TIIivTHd~~ 226 (400)
T PRK10070 153 GLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLI------RTEMQDELVKLQAKHQRTIVFISHDLD 226 (400)
T ss_pred CCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHH------HHHHHHHHHHHHHHCCCeEEEEECCHH
Confidence 011223445999999999999 9999999999999998 999999999987656899999999999
Q ss_pred CcccccccccceecCCeEEEecCcccccC
Q 005138 175 RTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (712)
Q Consensus 175 ~~~~~~~~~~ll~~~G~I~~~g~~~e~~~ 203 (712)
++...|++++++.+ |+++..|++.+++.
T Consensus 227 ~~~~~~Dri~vL~~-G~i~~~g~~~~l~~ 254 (400)
T PRK10070 227 EAMRIGDRIAIMQN-GEVVQVGTPDEILN 254 (400)
T ss_pred HHHHhCCEEEEEEC-CEEEecCCHHHHHh
Confidence 99888999999998 99999888766543
No 95
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.1e-24 Score=231.53 Aligned_cols=177 Identities=14% Similarity=0.164 Sum_probs=135.3
Q ss_pred cEEEEeeeeeecc------ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee
Q 005138 9 STQLIDGDGTFNV------SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW 82 (712)
Q Consensus 9 ~I~l~~l~k~y~~------~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~ 82 (712)
+|++.|+++.|+. .+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+...
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge------~~~iiG~NGaGKSTLl~~l~Gl~----~p~~G~i~~~g~~~ 71 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGS------FVALVGHTGSGKSTLMQHFNALL----KPSSGTITIAGYHI 71 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCC------EEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEECCEEC
Confidence 6899999999952 37999999999999 99999999999999999999999 89999853322100
Q ss_pred -----------eccccCC---Cc-----cchhcc-------------------------ccCCC-c--ccccchhhHHHH
Q 005138 83 -----------MARCAGI---EP-----CTLIMD-------------------------LEGTD-G--RERGEDDTAFEK 115 (712)
Q Consensus 83 -----------~~~~~~~---~~-----~~~v~d-------------------------~~g~~-~--~~r~~~~~~fer 115 (712)
....+++ .+ ...+.+ ..|+. . .......+..|+
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~ 151 (287)
T PRK13641 72 TPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQM 151 (287)
T ss_pred ccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHH
Confidence 0001111 00 001111 11221 0 111123345599
Q ss_pred HHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeE
Q 005138 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (712)
Q Consensus 116 Qrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I 192 (712)
||++||+|++ ++|||||||++||+.. ...+.+++.++.+. |+|||+||||++.+...|++++++.+ |++
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~------~~~l~~~l~~l~~~-g~tvlivsH~~~~~~~~~d~v~~l~~-G~i 223 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEG------RKEMMQLFKDYQKA-GHTVILVTHNMDDVAEYADDVLVLEH-GKL 223 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEEC-CEE
Confidence 9999999999 9999999999999998 99999999998654 99999999999999889999999988 999
Q ss_pred EEecCcccccC
Q 005138 193 WDSVPKPQAHM 203 (712)
Q Consensus 193 ~~~g~~~e~~~ 203 (712)
+..|++.+.+.
T Consensus 224 ~~~g~~~~~~~ 234 (287)
T PRK13641 224 IKHASPKEIFS 234 (287)
T ss_pred EEeCCHHHHhc
Confidence 99998766544
No 96
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.91 E-value=1.6e-24 Score=221.83 Aligned_cols=171 Identities=14% Similarity=0.153 Sum_probs=127.6
Q ss_pred cEEEEeeeeeecc-----ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-e-
Q 005138 9 STQLIDGDGTFNV-----SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-I- 81 (712)
Q Consensus 9 ~I~l~~l~k~y~~-----~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i- 81 (712)
+|++.|+++.|+. .+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+. +
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge------~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~ 70 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGE------TLGLVGESGSGKSTLARAILGLL----KPTSGSIIFDGKDLL 70 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEEcc
Confidence 4789999999953 47999999999999 99999999999999999999998 899998432211 0
Q ss_pred --------eeccccCC---------Cccchhccc-------c--------------------CCCc---ccccchhhHHH
Q 005138 82 --------WMARCAGI---------EPCTLIMDL-------E--------------------GTDG---RERGEDDTAFE 114 (712)
Q Consensus 82 --------~~~~~~~~---------~~~~~v~d~-------~--------------------g~~~---~~r~~~~~~fe 114 (712)
.+...+++ .+...+.+. . |+.. .......+..|
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~ 150 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQ 150 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHH
Confidence 00001110 000111110 0 1100 00111223449
Q ss_pred HHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCe
Q 005138 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (712)
Q Consensus 115 rQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~ 191 (712)
+||++||+|++ ++|||||||++||+.. ...+.+.+.++.++.|.|||+||||++.+...|++++++.+ |+
T Consensus 151 ~qrv~laral~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~-G~ 223 (228)
T cd03257 151 RQRVAIARALALNPKLLIADEPTSALDVSV------QAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYA-GK 223 (228)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCHHH------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeC-CE
Confidence 99999999999 9999999999999998 99999999998764589999999999998888999999988 99
Q ss_pred EEEec
Q 005138 192 IWDSV 196 (712)
Q Consensus 192 I~~~g 196 (712)
++..|
T Consensus 224 i~~~g 228 (228)
T cd03257 224 IVEEG 228 (228)
T ss_pred EEecC
Confidence 87643
No 97
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.4e-24 Score=229.84 Aligned_cols=178 Identities=15% Similarity=0.116 Sum_probs=134.2
Q ss_pred ccEEEEeeeeeecc----ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeee
Q 005138 8 CSTQLIDGDGTFNV----SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM 83 (712)
Q Consensus 8 ~~I~l~~l~k~y~~----~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~ 83 (712)
.+|++.|+++.|.. .+|+++++++..|+ +++|+||||||||||+++|+|+. +|++|++...+ ..+
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g-~~i 71 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGE------WLSIIGHNGSGKSTTVRLIDGLL----EAESGQIIIDG-DLL 71 (279)
T ss_pred ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCC------EEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEECC-EEC
Confidence 46999999999952 37999999999999 99999999999999999999999 89999853221 110
Q ss_pred --------ccccCC---C-----ccchhcccc-------CCCccc--------------------ccchhhHHHHHHHHH
Q 005138 84 --------ARCAGI---E-----PCTLIMDLE-------GTDGRE--------------------RGEDDTAFEKQSALF 120 (712)
Q Consensus 84 --------~~~~~~---~-----~~~~v~d~~-------g~~~~~--------------------r~~~~~~ferQrv~~ 120 (712)
...+++ . ....+.+.. |.+... .....+..|+||++|
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~l 151 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAI 151 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHH
Confidence 011111 0 001111111 111100 011223349999999
Q ss_pred HHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecC
Q 005138 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (712)
Q Consensus 121 A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~ 197 (712)
|+|++ ++||+||||++||+.. ...+++.+.++.++.|+|||+||||++.+. .|++++++.+ |++...|+
T Consensus 152 Aral~~~p~lLlLDEPt~~LD~~~------~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l~~-G~i~~~g~ 223 (279)
T PRK13650 152 AGAVAMRPKIIILDEATSMLDPEG------RLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKN-GQVESTST 223 (279)
T ss_pred HHHHHcCCCEEEEECCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEEC-CEEEEECC
Confidence 99999 9999999999999998 999999999997656999999999998874 6999999988 99999998
Q ss_pred cccccCC
Q 005138 198 KPQAHME 204 (712)
Q Consensus 198 ~~e~~~~ 204 (712)
+.+.+..
T Consensus 224 ~~~~~~~ 230 (279)
T PRK13650 224 PRELFSR 230 (279)
T ss_pred HHHHHcC
Confidence 7766544
No 98
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.91 E-value=9.2e-25 Score=222.36 Aligned_cols=165 Identities=24% Similarity=0.266 Sum_probs=122.1
Q ss_pred EEEEeeeeeecc-----ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee-
Q 005138 10 TQLIDGDGTFNV-----SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW- 82 (712)
Q Consensus 10 I~l~~l~k~y~~-----~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~- 82 (712)
|++.|+++.|+. .++++++++++.|+ +++|+|||||||||||++|+|+. +|++|++...+. +.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~------~~~l~G~nGsGKSTLl~~i~Gl~----~~~~G~i~~~g~~~~~ 70 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGE------FVAIVGPSGSGKSTLLNILGGLD----RPTSGEVRVDGTDISK 70 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCC------EEEEEcCCCCCHHHHHHHHhCCc----CCCceeEEECCEehhh
Confidence 468999999953 57999999999999 99999999999999999999999 899998532211 00
Q ss_pred ---------eccccC-------CCccchhccc-------c------------------CCCcc--cccchhhHHHHHHHH
Q 005138 83 ---------MARCAG-------IEPCTLIMDL-------E------------------GTDGR--ERGEDDTAFEKQSAL 119 (712)
Q Consensus 83 ---------~~~~~~-------~~~~~~v~d~-------~------------------g~~~~--~r~~~~~~ferQrv~ 119 (712)
....++ ..+...+.+. . |+... ......+..|+||++
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 150 (218)
T cd03255 71 LSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVA 150 (218)
T ss_pred cchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHH
Confidence 001111 1111111111 1 11100 011122344999999
Q ss_pred HHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeE
Q 005138 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (712)
Q Consensus 120 ~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I 192 (712)
||+|++ ++|||||||++||+.. ...+.+++.++.++.|+|||+||||++.+. .|++++++.+ |++
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~------~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~-G~i 218 (218)
T cd03255 151 IARALANDPKIILADEPTGNLDSET------GKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRD-GKI 218 (218)
T ss_pred HHHHHccCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeC-CcC
Confidence 999999 9999999999999998 999999999987645899999999998876 7999988887 764
No 99
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2e-24 Score=222.51 Aligned_cols=172 Identities=17% Similarity=0.161 Sum_probs=127.2
Q ss_pred ccEEEEeeeeeecc-----ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-e
Q 005138 8 CSTQLIDGDGTFNV-----SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-I 81 (712)
Q Consensus 8 ~~I~l~~l~k~y~~-----~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i 81 (712)
++|++.|+++.|+. .++++++++++.|+ +++|+|||||||||||++|+|+. +|++|++...+. +
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge------~~~l~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~i 73 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGE------MMAIVGSSGSGKSTLLHLLGGLD----TPTSGDVIFNGQPM 73 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCc------EEEEECCCCCCHHHHHHHHhcCC----CCCceEEEECCEEc
Confidence 36999999999942 47999999999999 99999999999999999999998 899998532210 0
Q ss_pred e---------e-ccccCC-------Cccchhccc-------cCCCcc--------------------cccchhhHHHHHH
Q 005138 82 W---------M-ARCAGI-------EPCTLIMDL-------EGTDGR--------------------ERGEDDTAFEKQS 117 (712)
Q Consensus 82 ~---------~-~~~~~~-------~~~~~v~d~-------~g~~~~--------------------~r~~~~~~ferQr 117 (712)
. . ...+++ .+...+.+. .+.... ......+..|+||
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr 153 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQR 153 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHH
Confidence 0 0 011111 111111111 011100 0111223449999
Q ss_pred HHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEE
Q 005138 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (712)
Q Consensus 118 v~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~ 194 (712)
++||+|++ ++||+||||++||+.. ...+.+.+.++.++.|+|+|+||||++.+.. +++++++.+ |+++.
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~-~~~~~~l~~-G~i~~ 225 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARN------ADSIFQLLGELNRLQGTAFLVVTHDLQLAKR-MSRQLEMRD-GRLTA 225 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh-hCEEEEEEC-CEEEE
Confidence 99999999 9999999999999998 9999999999875458999999999988776 468877777 99988
Q ss_pred ecC
Q 005138 195 SVP 197 (712)
Q Consensus 195 ~g~ 197 (712)
.++
T Consensus 226 ~~~ 228 (233)
T PRK11629 226 ELS 228 (233)
T ss_pred Eec
Confidence 765
No 100
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.4e-24 Score=219.90 Aligned_cols=168 Identities=15% Similarity=0.213 Sum_probs=126.0
Q ss_pred EEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC---------
Q 005138 10 TQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (712)
Q Consensus 10 I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~--------- 79 (712)
|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~------~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~ 70 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGE------IFGLLGPNGAGKTTTIRMILGII----LPDSGEVLFDGKPLDIAARN 70 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCc------EEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCCchhHHHHc
Confidence 46889999995 357999999999999 99999999999999999999998 89999854322
Q ss_pred Ce-eeccccCCCccchhccc-------cCCCcc--------------------cccchhhHHHHHHHHHHHHHH---HHh
Q 005138 80 GI-WMARCAGIEPCTLIMDL-------EGTDGR--------------------ERGEDDTAFEKQSALFALAVS---DIV 128 (712)
Q Consensus 80 gi-~~~~~~~~~~~~~v~d~-------~g~~~~--------------------~r~~~~~~ferQrv~~A~Ala---~iL 128 (712)
++ ++.......+...+.+. .+.... ......+..|+||++||+|++ +++
T Consensus 71 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~l 150 (210)
T cd03269 71 RIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELL 150 (210)
T ss_pred cEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 11 11111111111111111 111100 001122344999999999999 999
Q ss_pred hhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEe
Q 005138 129 LINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (712)
Q Consensus 129 lLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~ 195 (712)
|+||||++||+.. ...+.+.+.++.++ |.|+|++|||++.+...|++++++.+ |+++..
T Consensus 151 llDEP~~~LD~~~------~~~~~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~-g~i~~~ 209 (210)
T cd03269 151 ILDEPFSGLDPVN------VELLKDVIRELARA-GKTVILSTHQMELVEELCDRVLLLNK-GRAVLY 209 (210)
T ss_pred EEeCCCcCCCHHH------HHHHHHHHHHHHHC-CCEEEEECCCHHHHHHhhhEEEEEeC-CEEEec
Confidence 9999999999998 99999999998764 89999999999988888999999988 998754
No 101
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.5e-24 Score=219.77 Aligned_cols=168 Identities=17% Similarity=0.207 Sum_probs=124.6
Q ss_pred EEEEeeeeeeccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC----------
Q 005138 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK---------- 79 (712)
Q Consensus 10 I~l~~l~k~y~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~---------- 79 (712)
|.+.|+++.|+... .++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+
T Consensus 1 i~~~~l~~~~~~~~-~~is~~i~~Ge------~~~l~G~nGsGKSTLl~~l~gl~----~~~~G~i~~~g~~~~~~~~~~ 69 (211)
T cd03298 1 VRLDKIRFSYGEQP-MHFDLTFAQGE------ITAIVGPSGSGKSTLLNLIAGFE----TPQSGRVLINGVDVTAAPPAD 69 (211)
T ss_pred CEEEeEEEEeCCEe-cceEEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEEcCcCCHhH
Confidence 46889999996432 48999999999 99999999999999999999999 89999853321
Q ss_pred -Cee-eccccCCCccchhccccC-------------------------CCc--ccccchhhHHHHHHHHHHHHHH---HH
Q 005138 80 -GIW-MARCAGIEPCTLIMDLEG-------------------------TDG--RERGEDDTAFEKQSALFALAVS---DI 127 (712)
Q Consensus 80 -gi~-~~~~~~~~~~~~v~d~~g-------------------------~~~--~~r~~~~~~ferQrv~~A~Ala---~i 127 (712)
++. +.......+...+.+... +.. .......+..|+||++||+|++ ++
T Consensus 70 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~l 149 (211)
T cd03298 70 RPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPV 149 (211)
T ss_pred ccEEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 111 111111111111211110 000 0000112334999999999999 99
Q ss_pred hhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEe
Q 005138 128 VLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (712)
Q Consensus 128 LlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~ 195 (712)
+|+||||++||+.. ...+.+.+.++.++.|.|+|+||||++.+...|++++++.+ |+++..
T Consensus 150 lllDEP~~~LD~~~------~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~-G~i~~~ 210 (211)
T cd03298 150 LLLDEPFAALDPAL------RAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDN-GRIAAQ 210 (211)
T ss_pred EEEcCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEEC-CEEeec
Confidence 99999999999999 99999999998765589999999999999888999999988 998754
No 102
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.91 E-value=1.4e-24 Score=228.51 Aligned_cols=177 Identities=14% Similarity=0.135 Sum_probs=133.8
Q ss_pred cEEEEeeeeeec----------cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeecc
Q 005138 9 STQLIDGDGTFN----------VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT 78 (712)
Q Consensus 9 ~I~l~~l~k~y~----------~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t 78 (712)
+|++.|+++.|+ ..++++++++++.|+ +++|+|||||||||||++|+|+. +|++|++...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge------~~~i~G~NGsGKSTLl~~l~Gl~----~p~~G~i~~~ 73 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQ------TLAIIGENGSGKSTLAKMLAGMI----EPTSGELLID 73 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCC------EEEEEcCCCCCHHHHHHHHhCCC----CCCCCEEEEC
Confidence 699999999994 247999999999999 99999999999999999999999 8999985322
Q ss_pred CC-ee------eccccCC---------Cccchh--------------------------ccccCCCc---ccccchhhHH
Q 005138 79 KG-IW------MARCAGI---------EPCTLI--------------------------MDLEGTDG---RERGEDDTAF 113 (712)
Q Consensus 79 ~g-i~------~~~~~~~---------~~~~~v--------------------------~d~~g~~~---~~r~~~~~~f 113 (712)
+. +. ....+++ .+...+ ++..|+.. .......+..
T Consensus 74 g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G 153 (267)
T PRK15112 74 DHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPG 153 (267)
T ss_pred CEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHH
Confidence 10 00 0000110 000000 01112210 0011223445
Q ss_pred HHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCC
Q 005138 114 EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ 190 (712)
Q Consensus 114 erQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G 190 (712)
|+||++||+|++ ++|||||||++||+.. .+.+.+.+.++.++.|.|||+|||+++.+...|++++++.+ |
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~-G 226 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSM------RSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQ-G 226 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEEC-C
Confidence 999999999999 9999999999999998 99999999998765589999999999999888999999988 9
Q ss_pred eEEEecCccccc
Q 005138 191 KIWDSVPKPQAH 202 (712)
Q Consensus 191 ~I~~~g~~~e~~ 202 (712)
+++..|++++..
T Consensus 227 ~i~~~~~~~~~~ 238 (267)
T PRK15112 227 EVVERGSTADVL 238 (267)
T ss_pred EEEecCCHHHHh
Confidence 999888766544
No 103
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.7e-24 Score=224.07 Aligned_cols=174 Identities=16% Similarity=0.138 Sum_probs=131.7
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee-----
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW----- 82 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~----- 82 (712)
+|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+...
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge------~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~ 71 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGE------TLVLLGPSGAGKSSLLRVLNLLE----MPRSGTLNIAGNHFDFSKT 71 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEecccccc
Confidence 589999999995 457999999999999 99999999999999999999999 89999854322110
Q ss_pred --------eccccCC-------Cccchhccc--------cCCCcc--------------------cccchhhHHHHHHHH
Q 005138 83 --------MARCAGI-------EPCTLIMDL--------EGTDGR--------------------ERGEDDTAFEKQSAL 119 (712)
Q Consensus 83 --------~~~~~~~-------~~~~~v~d~--------~g~~~~--------------------~r~~~~~~ferQrv~ 119 (712)
....+++ .+...+.+. .+.... ......+..|+||++
T Consensus 72 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~ 151 (242)
T PRK11124 72 PSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVA 151 (242)
T ss_pred cchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH
Confidence 0001111 111111110 011100 001122344999999
Q ss_pred HHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEec
Q 005138 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 120 ~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g 196 (712)
||+|++ +++|+||||++||+.. ...+.+.+.++.+ .|+|+|+||||++.+...|++++++.+ |++...|
T Consensus 152 laral~~~p~llilDEPt~~LD~~~------~~~l~~~l~~~~~-~~~tii~~sh~~~~~~~~~d~i~~l~~-g~i~~~~ 223 (242)
T PRK11124 152 IARALMMEPQVLLFDEPTAALDPEI------TAQIVSIIRELAE-TGITQVIVTHEVEVARKTASRVVYMEN-GHIVEQG 223 (242)
T ss_pred HHHHHhcCCCEEEEcCCCCcCCHHH------HHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCEEEEEEC-CEEEEeC
Confidence 999999 9999999999999998 9999999999865 489999999999998888999999988 9999888
Q ss_pred Cccc
Q 005138 197 PKPQ 200 (712)
Q Consensus 197 ~~~e 200 (712)
++.+
T Consensus 224 ~~~~ 227 (242)
T PRK11124 224 DASC 227 (242)
T ss_pred CHHH
Confidence 7654
No 104
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.9e-24 Score=229.04 Aligned_cols=179 Identities=15% Similarity=0.114 Sum_probs=134.8
Q ss_pred ccEEEEeeeeeec-------cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC
Q 005138 8 CSTQLIDGDGTFN-------VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG 80 (712)
Q Consensus 8 ~~I~l~~l~k~y~-------~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g 80 (712)
++|++.|+++.|. ..+++++++++..|+ +++|+||||||||||+++|+|+. +|++|++...+.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge------~~~l~G~nGsGKSTLl~~l~Gl~----~~~~G~i~i~g~ 72 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGE------FLVILGRNGSGKSTIAKHMNALL----IPSEGKVYVDGL 72 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCE
Confidence 5799999999994 248999999999999 99999999999999999999999 899998533221
Q ss_pred ee--------eccccCC---Cc-----cchhcccc-------CCCccc--------------------ccchhhHHHHHH
Q 005138 81 IW--------MARCAGI---EP-----CTLIMDLE-------GTDGRE--------------------RGEDDTAFEKQS 117 (712)
Q Consensus 81 i~--------~~~~~~~---~~-----~~~v~d~~-------g~~~~~--------------------r~~~~~~ferQr 117 (712)
.. ..+.+++ .+ ...+.+.. +..... .....+.+|+||
T Consensus 73 ~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qr 152 (280)
T PRK13633 73 DTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQR 152 (280)
T ss_pred eccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHH
Confidence 00 0111111 00 00111111 111100 011223349999
Q ss_pred HHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEE
Q 005138 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (712)
Q Consensus 118 v~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~ 194 (712)
++||+|++ ++||+||||++||+.. +..+.+.+.++.++.|+|||+||||++.+.. |++++++.+ |++..
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~------~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~-G~i~~ 224 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSG------RREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDS-GKVVM 224 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEEC-CEEEE
Confidence 99999999 9999999999999998 9999999999876558999999999998876 999999988 99999
Q ss_pred ecCcccccCC
Q 005138 195 SVPKPQAHME 204 (712)
Q Consensus 195 ~g~~~e~~~~ 204 (712)
.|++.+...+
T Consensus 225 ~g~~~~~~~~ 234 (280)
T PRK13633 225 EGTPKEIFKE 234 (280)
T ss_pred ecCHHHHhcC
Confidence 9987766543
No 105
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.91 E-value=2.4e-24 Score=246.32 Aligned_cols=179 Identities=12% Similarity=0.089 Sum_probs=137.2
Q ss_pred cccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC------
Q 005138 7 CCSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------ 79 (712)
Q Consensus 7 ~~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~------ 79 (712)
+++|++.|+++.|+ ..++++++++++.|+ +++|+||||||||||||+|+|+. +|++|++...+
T Consensus 9 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge------~~~liG~NGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~ 78 (510)
T PRK15439 9 PPLLCARSISKQYSGVEVLKGIDFTLHAGE------VHALLGGNGAGKSTLMKIIAGIV----PPDSGTLEIGGNPCARL 78 (510)
T ss_pred CceEEEEeEEEEeCCceeeeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEECCCC
Confidence 34799999999995 457999999999999 99999999999999999999999 89999854322
Q ss_pred --------Ce-eeccccCCCccchhccc---------------------cCCCc--ccccchhhHHHHHHHHHHHHHH--
Q 005138 80 --------GI-WMARCAGIEPCTLIMDL---------------------EGTDG--RERGEDDTAFEKQSALFALAVS-- 125 (712)
Q Consensus 80 --------gi-~~~~~~~~~~~~~v~d~---------------------~g~~~--~~r~~~~~~ferQrv~~A~Ala-- 125 (712)
++ ++.......+...+.+. .|+.. .......+..||||++||+|++
T Consensus 79 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~ 158 (510)
T PRK15439 79 TPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRD 158 (510)
T ss_pred CHHHHHhCCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcC
Confidence 11 11111011111111111 11111 1111233455999999999999
Q ss_pred -HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccccC
Q 005138 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (712)
Q Consensus 126 -~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~~ 203 (712)
++|||||||++||+.. ...+.+.++++.++ |+|||+||||++.+...|++++++.+ |+++..|++.+...
T Consensus 159 p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~-g~tiiivtHd~~~~~~~~d~i~~l~~-G~i~~~g~~~~~~~ 229 (510)
T PRK15439 159 SRILILDEPTASLTPAE------TERLFSRIRELLAQ-GVGIVFISHKLPEIRQLADRISVMRD-GTIALSGKTADLST 229 (510)
T ss_pred CCEEEEECCCCCCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEecChHHcCH
Confidence 9999999999999998 99999999998765 89999999999999888999999988 99999888766543
No 106
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=1.5e-24 Score=230.18 Aligned_cols=180 Identities=13% Similarity=0.159 Sum_probs=137.0
Q ss_pred ccEEEEeeeeeec--cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee--
Q 005138 8 CSTQLIDGDGTFN--VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW-- 82 (712)
Q Consensus 8 ~~I~l~~l~k~y~--~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~-- 82 (712)
.+|++.|+++.|. ..+++++++++..|+ +++|+||||||||||+++|+|+. +|++|++...+. +.
T Consensus 4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge------~~~i~G~nGaGKSTLl~~i~Gl~----~p~~G~i~i~g~~~~~~ 73 (283)
T PRK13636 4 YILKVEELNYNYSDGTHALKGININIKKGE------VTAILGGNGAGKSTLFQNLNGIL----KPSSGRILFDGKPIDYS 73 (283)
T ss_pred ceEEEEeEEEEeCCCCeeeeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHhcCC----CCCccEEEECCEECCCC
Confidence 3699999999994 348999999999999 99999999999999999999999 899998543221 10
Q ss_pred ------eccccCC---Cc-----cchhcccc-------CCCcc--------------------cccchhhHHHHHHHHHH
Q 005138 83 ------MARCAGI---EP-----CTLIMDLE-------GTDGR--------------------ERGEDDTAFEKQSALFA 121 (712)
Q Consensus 83 ------~~~~~~~---~~-----~~~v~d~~-------g~~~~--------------------~r~~~~~~ferQrv~~A 121 (712)
+...+++ .+ ...+.+.. +.+.. ......+..|+||++||
T Consensus 74 ~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~la 153 (283)
T PRK13636 74 RKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIA 153 (283)
T ss_pred cchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHH
Confidence 0011111 00 01111111 11110 01112234499999999
Q ss_pred HHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCc
Q 005138 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (712)
Q Consensus 122 ~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~ 198 (712)
+|++ ++||+||||++||+.. ...+++++.++.++.|.|||++|||++.+...|++++++.+ |+++..|++
T Consensus 154 raL~~~p~lLilDEPt~gLD~~~------~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~-G~i~~~g~~ 226 (283)
T PRK13636 154 GVLVMEPKVLVLDEPTAGLDPMG------VSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKE-GRVILQGNP 226 (283)
T ss_pred HHHHcCCCEEEEeCCccCCCHHH------HHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999 9999999999999998 99999999999765589999999999999888999999988 999999987
Q ss_pred ccccCC
Q 005138 199 PQAHME 204 (712)
Q Consensus 199 ~e~~~~ 204 (712)
.+.+..
T Consensus 227 ~~~~~~ 232 (283)
T PRK13636 227 KEVFAE 232 (283)
T ss_pred HHHhcC
Confidence 776543
No 107
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.91 E-value=2.1e-24 Score=225.65 Aligned_cols=176 Identities=17% Similarity=0.175 Sum_probs=134.0
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee-----
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW----- 82 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~----- 82 (712)
+|++.|+++.|+ ..++++++++++.|+ +++|+|||||||||||++|+|+. +|++|++...+...
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge------~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~i~~~g~~~~~~~~ 74 (257)
T PRK10619 5 KLNVIDLHKRYGEHEVLKGVSLQANAGD------VISIIGSSGSGKSTFLRCINFLE----KPSEGSIVVNGQTINLVRD 74 (257)
T ss_pred cEEEeeeEEEECCEEEEeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEEcccccc
Confidence 589999999995 457999999999999 99999999999999999999999 89999743221100
Q ss_pred ---------------eccccCC-------Cccchhccc--------------------------cCCCcc---cccchhh
Q 005138 83 ---------------MARCAGI-------EPCTLIMDL--------------------------EGTDGR---ERGEDDT 111 (712)
Q Consensus 83 ---------------~~~~~~~-------~~~~~v~d~--------------------------~g~~~~---~r~~~~~ 111 (712)
+...+++ .+...+.+. .|+... ......+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS 154 (257)
T PRK10619 75 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLS 154 (257)
T ss_pred cccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCC
Confidence 0011111 011111111 111110 1112234
Q ss_pred HHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceec
Q 005138 112 AFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (712)
Q Consensus 112 ~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~ 188 (712)
..|+||++||+|++ +++|+||||++||+.. .+.+.+.+.++.+. |+|+|+||||++.+...|++++++.+
T Consensus 155 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~l~~~-g~tiiivsH~~~~~~~~~d~i~~l~~ 227 (257)
T PRK10619 155 GGQQQRVSIARALAMEPEVLLFDEPTSALDPEL------VGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQ 227 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 55999999999999 9999999999999999 99999999998764 99999999999999888999999988
Q ss_pred CCeEEEecCccccc
Q 005138 189 IQKIWDSVPKPQAH 202 (712)
Q Consensus 189 ~G~I~~~g~~~e~~ 202 (712)
|+++..|++++..
T Consensus 228 -G~i~~~~~~~~~~ 240 (257)
T PRK10619 228 -GKIEEEGAPEQLF 240 (257)
T ss_pred -CEEEEeCCHHHhh
Confidence 9999988876544
No 108
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=2.2e-24 Score=232.65 Aligned_cols=180 Identities=14% Similarity=0.126 Sum_probs=137.3
Q ss_pred ccEEEEeeeeeecc------ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-
Q 005138 8 CSTQLIDGDGTFNV------SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG- 80 (712)
Q Consensus 8 ~~I~l~~l~k~y~~------~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g- 80 (712)
++|++.|+++.|+. .+|+++++++..|+ +++|+|+||||||||+++|+|+. +|++|++...+-
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge------~~~I~G~nGsGKSTLl~~L~Gl~----~p~~G~I~i~g~~ 89 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNK------IYFIIGNSGSGKSTLVTHFNGLI----KSKYGTIQVGDIY 89 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCCeEEECCEE
Confidence 47999999999952 37999999999999 99999999999999999999999 899998543210
Q ss_pred ---e-------------------eeccccCC---Cc--cc---hhcc-------------------------ccCCCc--
Q 005138 81 ---I-------------------WMARCAGI---EP--CT---LIMD-------------------------LEGTDG-- 103 (712)
Q Consensus 81 ---i-------------------~~~~~~~~---~~--~~---~v~d-------------------------~~g~~~-- 103 (712)
. .+.+.+++ .+ .. .+.+ ..|+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~ 169 (320)
T PRK13631 90 IGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSY 169 (320)
T ss_pred cccccccccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhH
Confidence 0 00011111 00 00 1111 011110
Q ss_pred -ccccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccc
Q 005138 104 -RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE 179 (712)
Q Consensus 104 -~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~ 179 (712)
.......+..|+||++||+|++ ++|||||||++||+.. ...+++.+.++.++ |.|||+||||++.+...
T Consensus 170 ~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~------~~~l~~~L~~l~~~-g~TiiivtHd~~~~~~~ 242 (320)
T PRK13631 170 LERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKG------EHEMMQLILDAKAN-NKTVFVITHTMEHVLEV 242 (320)
T ss_pred hcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHH------HHHHHHHHHHHHHC-CCEEEEEecCHHHHHHh
Confidence 0111223445999999999999 9999999999999998 99999999998754 89999999999988888
Q ss_pred cccccceecCCeEEEecCcccccCCc
Q 005138 180 NLEPVLREDIQKIWDSVPKPQAHMET 205 (712)
Q Consensus 180 ~~~~~ll~~~G~I~~~g~~~e~~~~~ 205 (712)
|++++++.+ |+++..|++.+.+...
T Consensus 243 adri~vl~~-G~i~~~g~~~~~~~~~ 267 (320)
T PRK13631 243 ADEVIVMDK-GKILKTGTPYEIFTDQ 267 (320)
T ss_pred CCEEEEEEC-CEEEEeCCHHHHhcCH
Confidence 999999999 9999999987776543
No 109
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.91 E-value=2e-24 Score=225.08 Aligned_cols=176 Identities=19% Similarity=0.220 Sum_probs=132.2
Q ss_pred EEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee------
Q 005138 10 TQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW------ 82 (712)
Q Consensus 10 I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~------ 82 (712)
|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+...
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge------~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~i~~~~~~ 70 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAGE------KVALIGPSGSGKSTILRILMTLE----PIDEGQIQVEGEQLYHMPGR 70 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEEccccccc
Confidence 47899999995 457999999999999 99999999999999999999999 89999854322100
Q ss_pred --------------eccccC-------CCccchhccc--------cCCCcc--------------------cccchhhHH
Q 005138 83 --------------MARCAG-------IEPCTLIMDL--------EGTDGR--------------------ERGEDDTAF 113 (712)
Q Consensus 83 --------------~~~~~~-------~~~~~~v~d~--------~g~~~~--------------------~r~~~~~~f 113 (712)
+...++ ..+...+.+. .+.... ......+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G 150 (252)
T TIGR03005 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGG 150 (252)
T ss_pred cccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHH
Confidence 001111 1111111110 011100 001112334
Q ss_pred HHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCC
Q 005138 114 EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ 190 (712)
Q Consensus 114 erQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G 190 (712)
|+||+++|+|++ ++||+||||++||+.. ...+.+.+.++.++.|+|+|+||||++.+...|++++++.+ |
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~-G 223 (252)
T TIGR03005 151 QQQRVAIARALAMRPKVMLFDEVTSALDPEL------VGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDK-G 223 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEEC-C
Confidence 999999999999 9999999999999998 99999999998765589999999999998888999999988 9
Q ss_pred eEEEecCccccc
Q 005138 191 KIWDSVPKPQAH 202 (712)
Q Consensus 191 ~I~~~g~~~e~~ 202 (712)
+++..|++.+..
T Consensus 224 ~i~~~g~~~~~~ 235 (252)
T TIGR03005 224 RIVEQGKPDEIF 235 (252)
T ss_pred EEEEeCCHHHHh
Confidence 999988866554
No 110
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.91 E-value=2e-24 Score=233.95 Aligned_cols=183 Identities=13% Similarity=0.162 Sum_probs=134.8
Q ss_pred ccEEEEeeeeeec-----cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC---
Q 005138 8 CSTQLIDGDGTFN-----VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--- 79 (712)
Q Consensus 8 ~~I~l~~l~k~y~-----~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~--- 79 (712)
++|++.|+++.|. ..++++++++|..|+ +++|+|+||||||||+++|+|+.-....|++|++...+
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge------~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i 75 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGE------IRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDL 75 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCC------EEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEEC
Confidence 4799999999993 247999999999999 99999999999999999999998110114778743211
Q ss_pred --------------Cee-eccccC--CCccchh----c---------------------------cccCCCcc-----cc
Q 005138 80 --------------GIW-MARCAG--IEPCTLI----M---------------------------DLEGTDGR-----ER 106 (712)
Q Consensus 80 --------------gi~-~~~~~~--~~~~~~v----~---------------------------d~~g~~~~-----~r 106 (712)
++. +..... ..+...+ . +..|+... ..
T Consensus 76 ~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~ 155 (330)
T PRK15093 76 LRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSF 155 (330)
T ss_pred CcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCC
Confidence 110 000000 0110000 0 00111110 01
Q ss_pred cchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccc
Q 005138 107 GEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEP 183 (712)
Q Consensus 107 ~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~ 183 (712)
....+.+|+||++||+|++ ++||+||||++||+.. +..+++++.++.++.|+|+||||||++.+..+|+++
T Consensus 156 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~------~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri 229 (330)
T PRK15093 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTT------QAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKI 229 (330)
T ss_pred chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHH------HHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEE
Confidence 1123445999999999999 9999999999999998 999999999998766999999999999999999999
Q ss_pred cceecCCeEEEecCcccccC
Q 005138 184 VLREDIQKIWDSVPKPQAHM 203 (712)
Q Consensus 184 ~ll~~~G~I~~~g~~~e~~~ 203 (712)
++|.+ |+|+..|+..+++.
T Consensus 230 ~vm~~-G~ive~g~~~~i~~ 248 (330)
T PRK15093 230 NVLYC-GQTVETAPSKELVT 248 (330)
T ss_pred EEEEC-CEEEEECCHHHHHh
Confidence 99988 99999998766554
No 111
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.91 E-value=1.4e-24 Score=215.16 Aligned_cols=165 Identities=21% Similarity=0.271 Sum_probs=128.7
Q ss_pred EEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeec-----
Q 005138 11 QLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMA----- 84 (712)
Q Consensus 11 ~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~----- 84 (712)
++.|+++.|+ ..+++++++++..|+ +++|+||||||||||+++|+|+. +|++|++... |..+.
T Consensus 1 ~~~~l~~~~~~~~~l~~~~~~i~~G~------~~~l~G~nGsGKStLl~~i~G~~----~~~~G~v~~~-g~~~~~~~~~ 69 (180)
T cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGE------IVGILGPNGAGKSTLLKTLAGLL----KPSSGEILLD-GKDLASLSPK 69 (180)
T ss_pred CeeEEEEEECCeeeEeeeEEEECCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEEC-CEECCcCCHH
Confidence 3678999995 347999999999999 99999999999999999999999 8999985433 21111
Q ss_pred ---cccCCCccchhccccCCCcc--cccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHH
Q 005138 85 ---RCAGIEPCTLIMDLEGTDGR--ERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMM 156 (712)
Q Consensus 85 ---~~~~~~~~~~v~d~~g~~~~--~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~ 156 (712)
..+++-.. +++..|+... ......+..|+||+++|+|++ +++|+||||++||+.. ...+.+++.
T Consensus 70 ~~~~~i~~~~q--~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~------~~~~~~~l~ 141 (180)
T cd03214 70 ELARKIAYVPQ--ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAH------QIELLELLR 141 (180)
T ss_pred HHHHHHhHHHH--HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH------HHHHHHHHH
Confidence 01111111 2233343321 223445678999999999999 9999999999999998 999999999
Q ss_pred HhhCCCCceEEEEecCCCCcccccccccceecCCeEEEe
Q 005138 157 RLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (712)
Q Consensus 157 ~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~ 195 (712)
++.++.+.|+|++||+++.+...|++++++.+ |++...
T Consensus 142 ~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~-g~i~~~ 179 (180)
T cd03214 142 RLARERGKTVVMVLHDLNLAARYADRVILLKD-GRIVAQ 179 (180)
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEec
Confidence 98654478999999999998888999999988 998754
No 112
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.91 E-value=3.3e-24 Score=219.27 Aligned_cols=172 Identities=11% Similarity=0.068 Sum_probs=129.7
Q ss_pred EEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC--------
Q 005138 10 TQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-------- 80 (712)
Q Consensus 10 I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-------- 80 (712)
|++.++++.|+ ..++++++++++.|+ +++|+|||||||||||++|+|+. +|++|++...+.
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge------~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~~~~~~~~~~~ 70 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNS------VYGLLGPNGAGKSTLLKMITGIL----RPTSGEIIFDGHPWTRKDLH 70 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcCCc------EEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEeccccccc
Confidence 46899999995 457999999999999 99999999999999999999998 899998543221
Q ss_pred -ee-eccccCCCccchhccc---------------------cCCCcc--cccchhhHHHHHHHHHHHHHH---HHhhhcc
Q 005138 81 -IW-MARCAGIEPCTLIMDL---------------------EGTDGR--ERGEDDTAFEKQSALFALAVS---DIVLINM 132 (712)
Q Consensus 81 -i~-~~~~~~~~~~~~v~d~---------------------~g~~~~--~r~~~~~~ferQrv~~A~Ala---~iLlLDE 132 (712)
+. ........+...+.+. .|+... ......+..|+||+++|+|++ ++||+||
T Consensus 71 ~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDE 150 (223)
T TIGR03740 71 KIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDE 150 (223)
T ss_pred cEEEEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 11 1000000111111111 111100 001122345999999999999 9999999
Q ss_pred ccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcc
Q 005138 133 WCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (712)
Q Consensus 133 P~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~ 199 (712)
||++||+.. ...+.+++.++.++ |.|+|++|||++.+...|++++++.+ |++...|++.
T Consensus 151 P~~~LD~~~------~~~l~~~L~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~-g~i~~~~~~~ 209 (223)
T TIGR03740 151 PTNGLDPIG------IQELRELIRSFPEQ-GITVILSSHILSEVQQLADHIGIISE-GVLGYQGKIN 209 (223)
T ss_pred CccCCCHHH------HHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHhcCEEEEEeC-CEEEEecChh
Confidence 999999998 99999999998654 89999999999999888999999988 9999888754
No 113
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.91 E-value=1.7e-24 Score=242.13 Aligned_cols=180 Identities=14% Similarity=0.149 Sum_probs=139.9
Q ss_pred ccEEEEeeeeeecc------------ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCee
Q 005138 8 CSTQLIDGDGTFNV------------SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS 75 (712)
Q Consensus 8 ~~I~l~~l~k~y~~------------~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~ 75 (712)
+.+++.|++|.|.. .++++|+|++..|+ ++||+|++|||||||.++|+|+. +|++|++
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE------~lglVGeSGsGKSTlar~i~gL~----~P~~G~i 348 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGE------TLGLVGESGSGKSTLARILAGLL----PPSSGSI 348 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCceE
Confidence 46889999999952 35899999999999 99999999999999999999999 8999885
Q ss_pred eccCCe-------eec--cc--cC-------CCccchh--------------------------ccccCCCcc---cccc
Q 005138 76 QTTKGI-------WMA--RC--AG-------IEPCTLI--------------------------MDLEGTDGR---ERGE 108 (712)
Q Consensus 76 ~~t~gi-------~~~--~~--~~-------~~~~~~v--------------------------~d~~g~~~~---~r~~ 108 (712)
...+.. +.. .. +. ..+...| ++..|++.. ....
T Consensus 349 ~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~ 428 (539)
T COG1123 349 IFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPH 428 (539)
T ss_pred EEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCch
Confidence 433221 000 00 00 1121111 112222211 0011
Q ss_pred hhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccc
Q 005138 109 DDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVL 185 (712)
Q Consensus 109 ~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~l 185 (712)
..+..||||++||+||+ ++||+|||++.||+-. +..|+++++++.++.|.|.||||||+..+..+||++++
T Consensus 429 elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsv------qa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~v 502 (539)
T COG1123 429 ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSV------QAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAV 502 (539)
T ss_pred hcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHH------HHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEE
Confidence 22344999999999999 9999999999999988 99999999999998999999999999999999999999
Q ss_pred eecCCeEEEecCcccccCC
Q 005138 186 REDIQKIWDSVPKPQAHME 204 (712)
Q Consensus 186 l~~~G~I~~~g~~~e~~~~ 204 (712)
|.+ |+|+..|+.+.++++
T Consensus 503 m~~-G~iVE~G~~~~v~~~ 520 (539)
T COG1123 503 MYD-GRIVEEGPTEKVFEN 520 (539)
T ss_pred EEC-CeEEEeCCHHHHhcC
Confidence 999 999999977666543
No 114
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.91 E-value=3.1e-24 Score=220.12 Aligned_cols=169 Identities=18% Similarity=0.174 Sum_probs=125.7
Q ss_pred ccEEEEeeeeeecc-----ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC---
Q 005138 8 CSTQLIDGDGTFNV-----SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--- 79 (712)
Q Consensus 8 ~~I~l~~l~k~y~~-----~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~--- 79 (712)
.+|++.|+++.|+. .+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge------~~~i~G~nGsGKSTLl~~i~Gl~----~p~~G~i~~~g~~~ 74 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGE------TIALIGESGSGKSTLLAILAGLD----DGSSGEVSLVGQPL 74 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCC------EEEEECCCCCCHHHHHHHHHcCC----CCCCeeEEECCEEc
Confidence 47999999999953 37999999999999 99999999999999999999999 89999853221
Q ss_pred --------------Cee-eccccCCCccchhcccc-------CCCcc--------------------cccchhhHHHHHH
Q 005138 80 --------------GIW-MARCAGIEPCTLIMDLE-------GTDGR--------------------ERGEDDTAFEKQS 117 (712)
Q Consensus 80 --------------gi~-~~~~~~~~~~~~v~d~~-------g~~~~--------------------~r~~~~~~ferQr 117 (712)
++. +.......+...+.+.. +.... ......+..|+||
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qr 154 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQR 154 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHH
Confidence 110 01111111111111111 11000 0111223449999
Q ss_pred HHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEE
Q 005138 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (712)
Q Consensus 118 v~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~ 194 (712)
++||+|++ ++|||||||++||+.. ...+.+.+.++.++.|.|||++|||++.+.. |++++++.+ |++..
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~~l~~-g~i~~ 226 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQT------GDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVN-GQLQE 226 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEEC-CEEEe
Confidence 99999999 9999999999999998 9999999999876558999999999987754 898888888 98864
No 115
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.91 E-value=2.4e-24 Score=226.30 Aligned_cols=177 Identities=14% Similarity=0.188 Sum_probs=133.8
Q ss_pred cEEEEeeeeeec----------cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeecc
Q 005138 9 STQLIDGDGTFN----------VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT 78 (712)
Q Consensus 9 ~I~l~~l~k~y~----------~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t 78 (712)
+|++.|+++.|+ ..++++++++++.|+ +++|+|||||||||||++|+|+. +|++|++...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~ 71 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGE------TVGLLGRSGCGKSTLARLLLGLE----KPAQGTVSFR 71 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEEC
Confidence 589999999994 247999999999999 99999999999999999999999 8999985322
Q ss_pred CC-ee---------eccccCC---------Cccchhccc--------------------------cCCCc---ccccchh
Q 005138 79 KG-IW---------MARCAGI---------EPCTLIMDL--------------------------EGTDG---RERGEDD 110 (712)
Q Consensus 79 ~g-i~---------~~~~~~~---------~~~~~v~d~--------------------------~g~~~---~~r~~~~ 110 (712)
+. +. ....+++ .+...+.+. .|+.. .......
T Consensus 72 g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~L 151 (265)
T TIGR02769 72 GQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQL 151 (265)
T ss_pred CEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhC
Confidence 11 00 0001111 111111110 01110 0011122
Q ss_pred hHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccccccccee
Q 005138 111 TAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRE 187 (712)
Q Consensus 111 ~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~ 187 (712)
+..|+||++||+|++ ++|||||||++||+.. ...+.+.+.++.+..|+|||+||||++.+...|++++++.
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~------~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~ 225 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVL------QAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMD 225 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEe
Confidence 344999999999999 9999999999999998 9999999999876558999999999999988899999998
Q ss_pred cCCeEEEecCccccc
Q 005138 188 DIQKIWDSVPKPQAH 202 (712)
Q Consensus 188 ~~G~I~~~g~~~e~~ 202 (712)
+ |+++..|++.++.
T Consensus 226 ~-G~i~~~g~~~~~~ 239 (265)
T TIGR02769 226 K-GQIVEECDVAQLL 239 (265)
T ss_pred C-CEEEEECCHHHHc
Confidence 8 9999998876654
No 116
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.91 E-value=3e-24 Score=226.02 Aligned_cols=179 Identities=10% Similarity=0.112 Sum_probs=133.9
Q ss_pred ccEEEEeeeeeecc---ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee--
Q 005138 8 CSTQLIDGDGTFNV---SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW-- 82 (712)
Q Consensus 8 ~~I~l~~l~k~y~~---~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~-- 82 (712)
++|++.|+++.|+. .+++++++++..|+ +++|+||||||||||+++|+|+. +|++|++...+...
T Consensus 6 ~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge------~~~I~G~nGsGKSTLl~~i~Gl~----~~~~G~i~~~g~~~~~ 75 (269)
T PRK13648 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQ------WTSIVGHNGSGKSTIAKLMIGIE----KVKSGEIFYNNQAITD 75 (269)
T ss_pred ceEEEEEEEEEcCCCCCcceeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHhcCC----CCCceEEEECCEECCc
Confidence 47999999999953 37999999999999 99999999999999999999999 89999853321100
Q ss_pred -----eccccCC---C-----ccchhcc-------------------------ccCCCc--ccccchhhHHHHHHHHHHH
Q 005138 83 -----MARCAGI---E-----PCTLIMD-------------------------LEGTDG--RERGEDDTAFEKQSALFAL 122 (712)
Q Consensus 83 -----~~~~~~~---~-----~~~~v~d-------------------------~~g~~~--~~r~~~~~~ferQrv~~A~ 122 (712)
+...+++ . +...+.+ ..|+.. .......+..|+||+++|+
T Consensus 76 ~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lar 155 (269)
T PRK13648 76 DNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAG 155 (269)
T ss_pred CCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHH
Confidence 0001111 0 0000100 001110 0011123445999999999
Q ss_pred HHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcc
Q 005138 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (712)
Q Consensus 123 Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~ 199 (712)
|++ ++||+||||++||+.. ...+++.+.++.++.|+|+|+|||+++.+.. |++++++.+ |++...|++.
T Consensus 156 al~~~p~lllLDEPt~~LD~~~------~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~-G~i~~~g~~~ 227 (269)
T PRK13648 156 VLALNPSVIILDEATSMLDPDA------RQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNK-GTVYKEGTPT 227 (269)
T ss_pred HHHcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEEC-CEEEEecCHH
Confidence 999 9999999999999998 9999999999876558999999999988875 999999988 9999999877
Q ss_pred cccCC
Q 005138 200 QAHME 204 (712)
Q Consensus 200 e~~~~ 204 (712)
+....
T Consensus 228 ~~~~~ 232 (269)
T PRK13648 228 EIFDH 232 (269)
T ss_pred HHhcC
Confidence 66543
No 117
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=1.5e-24 Score=214.58 Aligned_cols=164 Identities=16% Similarity=0.152 Sum_probs=124.2
Q ss_pred EEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccc--
Q 005138 10 TQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC-- 86 (712)
Q Consensus 10 I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~-- 86 (712)
|++.|+++.|+ ..+++++++++..|+ +++|+||||||||||+++|+|+. +|++|++...+. .....
T Consensus 1 i~~~~l~~~~~~~~~l~~i~~~i~~G~------~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~-~~~~~~~ 69 (178)
T cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGE------IVALLGPSGSGKSTLLRCIAGLE----EPDSGSILIDGE-DLTDLED 69 (178)
T ss_pred CEEEEEEEEECCeEEEeeeeEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCE-Eccccch
Confidence 46889999995 357999999999999 99999999999999999999998 889998543221 11000
Q ss_pred ---cCCCccchhccccCCCcccccch-----hhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHH
Q 005138 87 ---AGIEPCTLIMDLEGTDGRERGED-----DTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVM 155 (712)
Q Consensus 87 ---~~~~~~~~v~d~~g~~~~~r~~~-----~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l 155 (712)
.......++.+........+..+ .+..|+||+++|+|++ +++|+||||++||+.. +..+++.+
T Consensus 70 ~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~------~~~l~~~l 143 (178)
T cd03229 70 ELPPLRRRIGMVFQDFALFPHLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPIT------RREVRALL 143 (178)
T ss_pred hHHHHhhcEEEEecCCccCCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHH------HHHHHHHH
Confidence 00011112222212221111111 4567999999999999 9999999999999999 99999999
Q ss_pred HHhhCCCCceEEEEecCCCCcccccccccceecCCe
Q 005138 156 MRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (712)
Q Consensus 156 ~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~ 191 (712)
.++.++.|.|+|+||||++.+...|++++++.+ |+
T Consensus 144 ~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~-g~ 178 (178)
T cd03229 144 KSLQAQLGITVVLVTHDLDEAARLADRVVVLRD-GK 178 (178)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeC-CC
Confidence 998764479999999999988888999888877 63
No 118
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.91 E-value=3e-24 Score=238.68 Aligned_cols=174 Identities=17% Similarity=0.195 Sum_probs=136.7
Q ss_pred cccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC------
Q 005138 7 CCSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------ 79 (712)
Q Consensus 7 ~~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~------ 79 (712)
++.+++.|++|+|+ ..+|++++|++..|+ |+||+|.||||||||+|+|+|.. +|++|++...+
T Consensus 6 ~~ll~~~~i~K~FggV~AL~~v~l~v~~GE------V~aL~GeNGAGKSTLmKiLsGv~----~p~~G~I~~~G~~~~~~ 75 (500)
T COG1129 6 PPLLELRGISKSFGGVKALDGVSLTVRPGE------VHALLGENGAGKSTLMKILSGVY----PPDSGEILIDGKPVAFS 75 (500)
T ss_pred cceeeeecceEEcCCceeeccceeEEeCce------EEEEecCCCCCHHHHHHHHhCcc----cCCCceEEECCEEccCC
Confidence 45799999999995 578999999999999 99999999999999999999999 89999854332
Q ss_pred --------Cee-eccccCCCccchhcccc-----------------------------CC--CcccccchhhHHHHHHHH
Q 005138 80 --------GIW-MARCAGIEPCTLIMDLE-----------------------------GT--DGRERGEDDTAFEKQSAL 119 (712)
Q Consensus 80 --------gi~-~~~~~~~~~~~~v~d~~-----------------------------g~--~~~~r~~~~~~ferQrv~ 119 (712)
||. +.+.....+.+.|.++. |. ++..........|||.|.
T Consensus 76 sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~Ve 155 (500)
T COG1129 76 SPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVE 155 (500)
T ss_pred CHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHH
Confidence 211 11111111222221111 11 111122233344999999
Q ss_pred HHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEec
Q 005138 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 120 ~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g 196 (712)
||+|++ ++|||||||+.|+... ...+|++++++.++ |+++|||||.++++..+||++++|.| |+++.+.
T Consensus 156 IArAl~~~arllIlDEPTaaLt~~E------~~~Lf~~ir~Lk~~-Gv~ii~ISHrl~Ei~~i~DritVlRD-G~~v~~~ 227 (500)
T COG1129 156 IARALSFDARVLILDEPTAALTVKE------TERLFDLIRRLKAQ-GVAIIYISHRLDEVFEIADRITVLRD-GRVVGTR 227 (500)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHhC-CCEEEEEcCcHHHHHHhcCEEEEEeC-CEEeeec
Confidence 999999 8999999999999988 99999999999865 99999999999999999999999999 9999988
Q ss_pred Cc
Q 005138 197 PK 198 (712)
Q Consensus 197 ~~ 198 (712)
+.
T Consensus 228 ~~ 229 (500)
T COG1129 228 PT 229 (500)
T ss_pred cc
Confidence 74
No 119
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.91 E-value=2.5e-24 Score=218.61 Aligned_cols=165 Identities=16% Similarity=0.279 Sum_probs=123.2
Q ss_pred cEEEEeeeeee-c-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee---
Q 005138 9 STQLIDGDGTF-N-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW--- 82 (712)
Q Consensus 9 ~I~l~~l~k~y-~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~--- 82 (712)
||++.|+++.| + ..+++++++++..|+ +++|+||||||||||+++|+|+. +|++|++...+. +.
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~------~~~l~G~nGsGKSTLl~~i~Gl~----~~~~G~i~~~g~~~~~~~ 70 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGE------FLFLTGPSGAGKTTLLKLLYGAL----TPSRGQVRIAGEDVNRLR 70 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEEcccCC
Confidence 48899999999 3 457999999999999 99999999999999999999998 899998532211 00
Q ss_pred ------eccccCC-------Cccchhccc-------c------------------CCCcc--cccchhhHHHHHHHHHHH
Q 005138 83 ------MARCAGI-------EPCTLIMDL-------E------------------GTDGR--ERGEDDTAFEKQSALFAL 122 (712)
Q Consensus 83 ------~~~~~~~-------~~~~~v~d~-------~------------------g~~~~--~r~~~~~~ferQrv~~A~ 122 (712)
+...+++ .+...+.+. . |+... ......+..|+||++||+
T Consensus 71 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~ 150 (214)
T TIGR02673 71 GRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIAR 150 (214)
T ss_pred HHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHH
Confidence 0011111 111111111 0 11100 011122345999999999
Q ss_pred HHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCe
Q 005138 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (712)
Q Consensus 123 Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~ 191 (712)
|++ +++||||||++||+.. +..+.+.+.++.++ |.|+|+||||++.+...|++++++.+ |+
T Consensus 151 al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tii~~tH~~~~~~~~~d~i~~l~~-G~ 214 (214)
T TIGR02673 151 AIVNSPPLLLADEPTGNLDPDL------SERILDLLKRLNKR-GTTVIVATHDLSLVDRVAHRVIILDD-GR 214 (214)
T ss_pred HHhCCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCEEEEecC-CC
Confidence 999 9999999999999999 99999999998654 89999999999998888999988877 64
No 120
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.91 E-value=2.2e-24 Score=223.41 Aligned_cols=175 Identities=14% Similarity=0.159 Sum_probs=131.7
Q ss_pred EEEEeeeeeecc--ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-------
Q 005138 10 TQLIDGDGTFNV--SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------- 80 (712)
Q Consensus 10 I~l~~l~k~y~~--~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g------- 80 (712)
+++.++++.|+. .+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+.
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge------~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~ 70 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGE------FLVLIGPSGSGKTTTMKMINRLI----EPTSGEIFIDGEDIREQDP 70 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCC------EEEEECCCCCCHHHHHHHHhcCC----CCCCceEEECCeEcCcCCh
Confidence 468999999953 57999999999999 99999999999999999999999 899998532211
Q ss_pred ------e-eeccccCCCccchhc-------------------------cccCCCc----ccccchhhHHHHHHHHHHHHH
Q 005138 81 ------I-WMARCAGIEPCTLIM-------------------------DLEGTDG----RERGEDDTAFEKQSALFALAV 124 (712)
Q Consensus 81 ------i-~~~~~~~~~~~~~v~-------------------------d~~g~~~----~~r~~~~~~ferQrv~~A~Al 124 (712)
+ ++.......+...+. +..|+.. .......+..|+||++||+|+
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral 150 (242)
T cd03295 71 VELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARAL 150 (242)
T ss_pred HHhhcceEEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHH
Confidence 1 011110111111110 1112211 011122345599999999999
Q ss_pred H---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccc
Q 005138 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (712)
Q Consensus 125 a---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~ 201 (712)
+ ++||+||||++||+.. ...+.+.+.++.++.|+|+|+|||+++.+...|++++++.+ |+++..+++.+.
T Consensus 151 ~~~p~llllDEPt~~LD~~~------~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~-G~i~~~~~~~~~ 223 (242)
T cd03295 151 AADPPLLLMDEPFGALDPIT------RDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKN-GEIVQVGTPDEI 223 (242)
T ss_pred hcCCCEEEecCCcccCCHHH------HHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEEC-CEEEEecCHHHH
Confidence 9 9999999999999998 99999999998764589999999999988888999999988 999988876544
No 121
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.91 E-value=2.1e-24 Score=218.00 Aligned_cols=164 Identities=12% Similarity=0.107 Sum_probs=122.8
Q ss_pred EEeeeeeec--cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee----ecc
Q 005138 12 LIDGDGTFN--VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW----MAR 85 (712)
Q Consensus 12 l~~l~k~y~--~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~----~~~ 85 (712)
+.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+... ..+
T Consensus 2 ~~~l~~~~~~~~~~l~~v~~~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~~~~ 71 (205)
T cd03226 2 IENISFSYKKGTEILDDLSLDLYAGE------IIALTGKNGAGKTTLAKILAGLI----KESSGSILLNGKPIKAKERRK 71 (205)
T ss_pred cccEEEEeCCcCceeeeeeEEEcCCC------EEEEECCCCCCHHHHHHHHhcCC----CCCceEEEECCEEhhhHHhhc
Confidence 578899995 357999999999999 99999999999999999999999 89999853322100 000
Q ss_pred ccCC---C-----ccchhcccc---------------------CCCc--ccccchhhHHHHHHHHHHHHHH---HHhhhc
Q 005138 86 CAGI---E-----PCTLIMDLE---------------------GTDG--RERGEDDTAFEKQSALFALAVS---DIVLIN 131 (712)
Q Consensus 86 ~~~~---~-----~~~~v~d~~---------------------g~~~--~~r~~~~~~ferQrv~~A~Ala---~iLlLD 131 (712)
.+++ . ....+.+.. |+.. .......+..|+||+++|+|++ ++||+|
T Consensus 72 ~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 151 (205)
T cd03226 72 SIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFD 151 (205)
T ss_pred ceEEEecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 1110 0 001111111 1110 0011223445999999999999 999999
Q ss_pred cccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEE
Q 005138 132 MWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (712)
Q Consensus 132 EP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~ 193 (712)
|||++||+.. .+.+.+.+.++.++ |.|+|+||||++.+...|++++++.+ |+++
T Consensus 152 EPt~~LD~~~------~~~l~~~l~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~-G~iv 205 (205)
T cd03226 152 EPTSGLDYKN------MERVGELIRELAAQ-GKAVIVITHDYEFLAKVCDRVLLLAN-GAIV 205 (205)
T ss_pred CCCccCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEEC-CEEC
Confidence 9999999998 99999999998754 89999999999998888999999988 8874
No 122
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=3.3e-24 Score=223.44 Aligned_cols=181 Identities=15% Similarity=0.133 Sum_probs=131.9
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccC-ccCCCCCeeeccCC-e---
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFR-EMDAFKGRSQTTKG-I--- 81 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~-~m~p~sG~~~~t~g-i--- 81 (712)
++|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+.-. ...|++|++...+. +
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 78 (253)
T PRK14242 5 PKMEARGLSFFYGDFQALHDISLEFEQNQ------VTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDP 78 (253)
T ss_pred cEEEEeeeEEEECCeeeecceeEEEeCCC------EEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccc
Confidence 5699999999995 357999999999999 9999999999999999999998610 00157887432210 0
Q ss_pred -----eeccccCC-------Ccc------chhcccc-------------------CCCc------ccccchhhHHHHHHH
Q 005138 82 -----WMARCAGI-------EPC------TLIMDLE-------------------GTDG------RERGEDDTAFEKQSA 118 (712)
Q Consensus 82 -----~~~~~~~~-------~~~------~~v~d~~-------------------g~~~------~~r~~~~~~ferQrv 118 (712)
.....+++ .+. .+..... |+.. .......+..|+||+
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv 158 (253)
T PRK14242 79 HVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRL 158 (253)
T ss_pred ccCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHH
Confidence 00011111 010 0000111 1100 001122345599999
Q ss_pred HHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEe
Q 005138 119 LFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (712)
Q Consensus 119 ~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~ 195 (712)
++|+|++ ++||+||||++||+.. ...+.+.+.++. + +.|||+||||++.+...|++++++.+ |+++..
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~-~-~~tvii~tH~~~~~~~~~d~v~~l~~-G~i~~~ 229 (253)
T PRK14242 159 CIARALAVEPEVLLMDEPASALDPIA------TQKIEELIHELK-A-RYTIIIVTHNMQQAARVSDVTAFFYM-GKLIEV 229 (253)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHh-c-CCeEEEEEecHHHHHHhCCEEEEEEC-CEEEEe
Confidence 9999999 9999999999999998 999999999984 3 78999999999999888999999988 999998
Q ss_pred cCcccccC
Q 005138 196 VPKPQAHM 203 (712)
Q Consensus 196 g~~~e~~~ 203 (712)
|++.+.+.
T Consensus 230 g~~~~~~~ 237 (253)
T PRK14242 230 GPTEQIFT 237 (253)
T ss_pred CCHHHHHc
Confidence 88766543
No 123
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=2.3e-24 Score=212.33 Aligned_cols=165 Identities=10% Similarity=0.117 Sum_probs=124.9
Q ss_pred EEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeecc-cc
Q 005138 10 TQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMAR-CA 87 (712)
Q Consensus 10 I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~-~~ 87 (712)
+++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+...... ..
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~Ge------~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~ 70 (173)
T cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGE------IYGLLGPNGAGKTTLIKIILGLL----KPDSGEIKVLGKDIKKEPEE 70 (173)
T ss_pred CEEEEEEEEECCeeeeeeeEEEEcCCc------EEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEEcccchHh
Confidence 46889999995 357999999999999 99999999999999999999998 88999854322110000 00
Q ss_pred CCCccchhccccCCCcccccch---hhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCC
Q 005138 88 GIEPCTLIMDLEGTDGRERGED---DTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP 161 (712)
Q Consensus 88 ~~~~~~~v~d~~g~~~~~r~~~---~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~ 161 (712)
......++..........+..+ .+..|+||+++|+|++ +++|+||||++||+.. ...+.+.+.++.++
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~------~~~l~~~l~~~~~~ 144 (173)
T cd03230 71 VKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPES------RREFWELLRELKKE 144 (173)
T ss_pred hhccEEEEecCCccccCCcHHHHhhcCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHH------HHHHHHHHHHHHHC
Confidence 0001111112112222112111 4667999999999999 9999999999999998 99999999999776
Q ss_pred CCceEEEEecCCCCcccccccccceecCCeE
Q 005138 162 RKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (712)
Q Consensus 162 ~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I 192 (712)
|.|+|++|||.+.+...|++++++.+ |++
T Consensus 145 -g~tiii~th~~~~~~~~~d~i~~l~~-g~i 173 (173)
T cd03230 145 -GKTILLSSHILEEAERLCDRVAILNN-GRI 173 (173)
T ss_pred -CCEEEEECCCHHHHHHhCCEEEEEeC-CCC
Confidence 89999999999988888999998887 763
No 124
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.90 E-value=2.2e-24 Score=233.46 Aligned_cols=182 Identities=13% Similarity=0.116 Sum_probs=138.2
Q ss_pred CcccEEEEeeeeeec-----cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCC---CCeeec
Q 005138 6 ECCSTQLIDGDGTFN-----VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAF---KGRSQT 77 (712)
Q Consensus 6 ~~~~I~l~~l~k~y~-----~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~---sG~~~~ 77 (712)
+.++|++.|+++.|. ..++++++|+|..|+ +++|+|+||||||||+++|+|+. +|. +|++..
T Consensus 9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge------~~~ivG~sGsGKSTL~~~l~Gl~----~p~~~~sG~I~~ 78 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGE------TLGIVGESGSGKSQTAFALMGLL----AANGRIGGSATF 78 (330)
T ss_pred CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCC------EEEEECCCCchHHHHHHHHHcCC----CCCCCCCeEEEE
Confidence 445799999999993 247999999999999 99999999999999999999999 775 787432
Q ss_pred cCC-----------------ee--ecccc-CCCccchh--------------------------ccccCCCccc-----c
Q 005138 78 TKG-----------------IW--MARCA-GIEPCTLI--------------------------MDLEGTDGRE-----R 106 (712)
Q Consensus 78 t~g-----------------i~--~~~~~-~~~~~~~v--------------------------~d~~g~~~~~-----r 106 (712)
.+. +- +.... ...+...+ ++..|++... .
T Consensus 79 ~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~ 158 (330)
T PRK09473 79 NGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMY 158 (330)
T ss_pred CCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCC
Confidence 211 10 01000 01111111 1111222110 1
Q ss_pred cchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccc
Q 005138 107 GEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEP 183 (712)
Q Consensus 107 ~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~ 183 (712)
....+..|+||++||+|++ ++||+||||++||+.. +..+++++.++.++.|+|+||||||++.+..+|+++
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~------~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri 232 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTV------QAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKV 232 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEE
Confidence 1223556999999999999 9999999999999998 999999999998766999999999999998889999
Q ss_pred cceecCCeEEEecCcccccCC
Q 005138 184 VLREDIQKIWDSVPKPQAHME 204 (712)
Q Consensus 184 ~ll~~~G~I~~~g~~~e~~~~ 204 (712)
++|.+ |+|+..|++.+++.+
T Consensus 233 ~vm~~-G~ive~g~~~~i~~~ 252 (330)
T PRK09473 233 LVMYA-GRTMEYGNARDVFYQ 252 (330)
T ss_pred EEEEC-CEEEEECCHHHHHhC
Confidence 99988 999999998776643
No 125
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.90 E-value=3.5e-24 Score=224.59 Aligned_cols=176 Identities=16% Similarity=0.144 Sum_probs=131.2
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCC---CCeeeccCC-e-
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAF---KGRSQTTKG-I- 81 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~---sG~~~~t~g-i- 81 (712)
++|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|+ +|++...+. +
T Consensus 3 ~~l~~~nl~~~~~~~~il~~vs~~i~~Ge------~~~i~G~nGsGKSTLl~~i~G~~----~p~~~~~G~i~~~g~~~~ 72 (262)
T PRK09984 3 TIIRVEKLAKTFNQHQALHAVDLNIHHGE------MVALLGPSGSGKSTLLRHLSGLI----TGDKSAGSHIELLGRTVQ 72 (262)
T ss_pred cEEEEeeEEEEeCCeEEEecceEEEcCCc------EEEEECCCCCCHHHHHHHHhccC----CCCCCCceEEEECCEecc
Confidence 4799999999995 457999999999999 99999999999999999999998 665 376432111 0
Q ss_pred -----------------eeccccCCCccchhccccCC---------------Cccc--------------------ccch
Q 005138 82 -----------------WMARCAGIEPCTLIMDLEGT---------------DGRE--------------------RGED 109 (712)
Q Consensus 82 -----------------~~~~~~~~~~~~~v~d~~g~---------------~~~~--------------------r~~~ 109 (712)
++.......+...+.+.... .... ....
T Consensus 73 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 152 (262)
T PRK09984 73 REGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVST 152 (262)
T ss_pred cccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccc
Confidence 00111011111111111000 0000 0011
Q ss_pred hhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccce
Q 005138 110 DTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLR 186 (712)
Q Consensus 110 ~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll 186 (712)
.+..|+||++||+|++ ++||+||||++||+.. ...+.+.+.++.++.|+|||++|||++.+...|++++++
T Consensus 153 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l 226 (262)
T PRK09984 153 LSGGQQQRVAIARALMQQAKVILADEPIASLDPES------ARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVAL 226 (262)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 2233999999999999 9999999999999998 999999999987555899999999999988889999999
Q ss_pred ecCCeEEEecCccc
Q 005138 187 EDIQKIWDSVPKPQ 200 (712)
Q Consensus 187 ~~~G~I~~~g~~~e 200 (712)
.+ |++...|++.+
T Consensus 227 ~~-g~i~~~g~~~~ 239 (262)
T PRK09984 227 RQ-GHVFYDGSSQQ 239 (262)
T ss_pred EC-CEEEEeCCHHH
Confidence 88 99999888755
No 126
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.90 E-value=3.3e-24 Score=218.73 Aligned_cols=167 Identities=19% Similarity=0.225 Sum_probs=123.4
Q ss_pred cEEEEeeeeeecc-----ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee-
Q 005138 9 STQLIDGDGTFNV-----SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW- 82 (712)
Q Consensus 9 ~I~l~~l~k~y~~-----~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~- 82 (712)
.|++.|+++.|+. .+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+.-.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~------~~~i~G~nGsGKSTLl~~i~G~~----~~~~G~i~~~g~~~~ 70 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGE------IVAIVGSSGSGKSTLLHLLGGLD----NPTSGEVLFNGQSLS 70 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCc------EEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEEhh
Confidence 3789999999942 47999999999999 99999999999999999999998 89999854321100
Q ss_pred ----------eccccC-------CCccchhcccc-------------------------CCCcc--cccchhhHHHHHHH
Q 005138 83 ----------MARCAG-------IEPCTLIMDLE-------------------------GTDGR--ERGEDDTAFEKQSA 118 (712)
Q Consensus 83 ----------~~~~~~-------~~~~~~v~d~~-------------------------g~~~~--~r~~~~~~ferQrv 118 (712)
....++ ..+...+.+.. |+... ......+..|+||+
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRV 150 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHH
Confidence 001111 11111111111 11100 00112234499999
Q ss_pred HHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEE
Q 005138 119 LFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (712)
Q Consensus 119 ~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~ 193 (712)
+||+|++ ++|||||||++||+.. ...+.+.+.++.++.|.|+|+||||++.+.. +++++++.+ |+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~-G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNN------AKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKD-GQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeC-CEec
Confidence 9999999 9999999999999998 9999999999876558999999999987754 788888887 8875
No 127
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.90 E-value=2.8e-24 Score=224.55 Aligned_cols=185 Identities=14% Similarity=0.120 Sum_probs=135.9
Q ss_pred EEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC--------
Q 005138 10 TQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-------- 80 (712)
Q Consensus 10 I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-------- 80 (712)
|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+.
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~Ge------~~~i~G~nGsGKSTLl~~i~G~~----~~~~G~i~~~g~~~~~~~~~ 71 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGS------LTGLLGPNGSGKSTLLRLLAGAL----RPDAGTVDLAGVDLHGLSRR 71 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCCc------EEEEECCCCCCHHHHHHHHcCCC----CCCCCEEEECCEEcccCCHH
Confidence 68999999995 457999999999999 99999999999999999999999 899998433211
Q ss_pred -----ee-eccccCCCccchhcccc--C---------CCccc---c-----------------cchhhHHHHHHHHHHHH
Q 005138 81 -----IW-MARCAGIEPCTLIMDLE--G---------TDGRE---R-----------------GEDDTAFEKQSALFALA 123 (712)
Q Consensus 81 -----i~-~~~~~~~~~~~~v~d~~--g---------~~~~~---r-----------------~~~~~~ferQrv~~A~A 123 (712)
+. +...........+.+.. + ..... + ....+..|+||+++|+|
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a 151 (256)
T TIGR03873 72 ARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARA 151 (256)
T ss_pred HHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 11 11110001111111111 0 00000 0 01112339999999999
Q ss_pred HH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCccc
Q 005138 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (712)
Q Consensus 124 la---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e 200 (712)
++ +++|+||||++||+.. ...+.+++.++.++ |.|||++|||++.+...|++++++.+ |+++..|+..+
T Consensus 152 l~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~-G~i~~~g~~~~ 223 (256)
T TIGR03873 152 LAQEPKLLLLDEPTNHLDVRA------QLETLALVRELAAT-GVTVVAALHDLNLAASYCDHVVVLDG-GRVVAAGPPRE 223 (256)
T ss_pred HhcCCCEEEEcCccccCCHHH------HHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEeC-CCEEEecCHHH
Confidence 99 9999999999999998 99999999998754 89999999999999888999999988 99999988766
Q ss_pred ccCCccchhhhc
Q 005138 201 AHMETPLSEFFN 212 (712)
Q Consensus 201 ~~~~~~l~d~f~ 212 (712)
......+...|.
T Consensus 224 ~~~~~~~~~~~~ 235 (256)
T TIGR03873 224 VLTPALIRAVYG 235 (256)
T ss_pred hhCHHHHHHHhC
Confidence 544333333443
No 128
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.90 E-value=2.7e-24 Score=213.54 Aligned_cols=162 Identities=12% Similarity=0.099 Sum_probs=124.1
Q ss_pred cEEEEeeeeeeccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccc--
Q 005138 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC-- 86 (712)
Q Consensus 9 ~I~l~~l~k~y~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~-- 86 (712)
+|++.|+++.| +++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+. .....
T Consensus 4 ~l~~~~l~~~~---~l~~vs~~i~~G~------~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~-~~~~~~~ 69 (182)
T cd03215 4 VLEVRGLSVKG---AVRDVSFEVRAGE------IVGIAGLVGNGQTELAEALFGLR----PPASGEITLDGK-PVTRRSP 69 (182)
T ss_pred EEEEeccEEEe---eecceEEEEcCCc------EEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCE-ECCccCH
Confidence 69999999999 7999999999999 99999999999999999999999 899998543221 11000
Q ss_pred --cCCCccchhccc---cCCCcccccch-------hhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHH
Q 005138 87 --AGIEPCTLIMDL---EGTDGRERGED-------DTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTV 151 (712)
Q Consensus 87 --~~~~~~~~v~d~---~g~~~~~r~~~-------~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v 151 (712)
.......++.+. .+.....+..+ .+..|+||+++|+|++ ++||+|||+++||+.. .+.+
T Consensus 70 ~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~------~~~l 143 (182)
T cd03215 70 RDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGA------KAEI 143 (182)
T ss_pred HHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHH------HHHH
Confidence 000011111111 01111111111 4557999999999999 9999999999999998 9999
Q ss_pred HHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeE
Q 005138 152 FQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (712)
Q Consensus 152 ~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I 192 (712)
.+++.++.++ |.|+|++||+++.+...|++++++.+ |++
T Consensus 144 ~~~l~~~~~~-~~tiii~sh~~~~~~~~~d~v~~l~~-G~i 182 (182)
T cd03215 144 YRLIRELADA-GKAVLLISSELDELLGLCDRILVMYE-GRI 182 (182)
T ss_pred HHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEecC-CcC
Confidence 9999998754 89999999999999888999999887 764
No 129
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.90 E-value=5.1e-24 Score=216.51 Aligned_cols=170 Identities=18% Similarity=0.178 Sum_probs=126.9
Q ss_pred EEEEeeeeeeccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC---------
Q 005138 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG--------- 80 (712)
Q Consensus 10 I~l~~l~k~y~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g--------- 80 (712)
+++.|+++.|.. .+.++++++..|+ +++|+||||||||||+++|+|+. +|++|++...+.
T Consensus 1 ~~~~~l~~~~~~-~~~~~s~~i~~Ge------~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~~ 69 (213)
T TIGR01277 1 LALDKVRYEYEH-LPMEFDLNVADGE------IVAIMGPSGAGKSTLLNLIAGFI----EPASGSIKVNDQSHTGLAPYQ 69 (213)
T ss_pred CeEEeeeEEeCC-cceeeEEEEeCCc------EEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEECCEEcccCChhc
Confidence 468999999964 5689999999999 99999999999999999999999 899998543211
Q ss_pred --e-eeccccCCCccchhccccCC------C-c-cc--c-----------------cchhhHHHHHHHHHHHHHH---HH
Q 005138 81 --I-WMARCAGIEPCTLIMDLEGT------D-G-RE--R-----------------GEDDTAFEKQSALFALAVS---DI 127 (712)
Q Consensus 81 --i-~~~~~~~~~~~~~v~d~~g~------~-~-~~--r-----------------~~~~~~ferQrv~~A~Ala---~i 127 (712)
+ ++.......+...+.+.... . . .. + ....+..|+||+++|+|++ ++
T Consensus 70 ~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 149 (213)
T TIGR01277 70 RPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPI 149 (213)
T ss_pred cceEEEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 0 11111111111111121110 0 0 00 0 0112233999999999999 99
Q ss_pred hhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecC
Q 005138 128 VLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (712)
Q Consensus 128 LlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~ 197 (712)
+|+||||++||+.. ...+++.+.++.++.|+|||+|||+++.+...|++++++.+ |+++..|.
T Consensus 150 lllDEPt~~LD~~~------~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~-g~i~~~~~ 212 (213)
T TIGR01277 150 LLLDEPFSALDPLL------REEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQ-GKIKVVSD 212 (213)
T ss_pred EEEcCCCccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEEC-CeEEEecC
Confidence 99999999999999 99999999998765589999999999988888999999988 99987763
No 130
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.90 E-value=4.7e-24 Score=223.09 Aligned_cols=177 Identities=14% Similarity=0.110 Sum_probs=134.5
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC------e
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------I 81 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g------i 81 (712)
+|++.|+++.|+ ..+++++++++..|+ +++|+||||||||||+++|+|+. +|++|++...+. +
T Consensus 6 ~l~~~~l~~~~~~~~il~~is~~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~i 75 (258)
T PRK11701 6 LLSVRGLTKLYGPRKGCRDVSFDLYPGE------VLGIVGESGSGKTTLLNALSARL----APDAGEVHYRMRDGQLRDL 75 (258)
T ss_pred eEEEeeeEEEcCCceeeeeeeEEEeCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCCEEEECCcccccccc
Confidence 699999999995 457899999999999 99999999999999999999999 899998532110 0
Q ss_pred e----------eccccCC---------Cccchh--------------------------ccccCCCc---ccccchhhHH
Q 005138 82 W----------MARCAGI---------EPCTLI--------------------------MDLEGTDG---RERGEDDTAF 113 (712)
Q Consensus 82 ~----------~~~~~~~---------~~~~~v--------------------------~d~~g~~~---~~r~~~~~~f 113 (712)
. .....++ .....+ ++..|+.. .......+..
T Consensus 76 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G 155 (258)
T PRK11701 76 YALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGG 155 (258)
T ss_pred ccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHH
Confidence 0 0000111 000000 00111110 0111223455
Q ss_pred HHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCC
Q 005138 114 EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ 190 (712)
Q Consensus 114 erQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G 190 (712)
|+||++||+|++ ++||+||||++||+.. ...+.+.+.++.++.|.|+|+||||++.+...|++++++.+ |
T Consensus 156 q~qrl~laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~-g 228 (258)
T PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSV------QARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQ-G 228 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEEC-C
Confidence 999999999999 9999999999999998 99999999998765589999999999999888999999988 9
Q ss_pred eEEEecCccccc
Q 005138 191 KIWDSVPKPQAH 202 (712)
Q Consensus 191 ~I~~~g~~~e~~ 202 (712)
+++..|++++.+
T Consensus 229 ~i~~~~~~~~~~ 240 (258)
T PRK11701 229 RVVESGLTDQVL 240 (258)
T ss_pred EEEEeCCHHHHh
Confidence 999998876654
No 131
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.90 E-value=3.2e-24 Score=244.14 Aligned_cols=177 Identities=16% Similarity=0.148 Sum_probs=135.8
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee-e--
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW-M-- 83 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~-~-- 83 (712)
||++.|+++.|+ ..+++++++++..|+ +++|+||||||||||||+|+|+. +|++|++...+. +. .
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge------~~~liG~nGsGKSTLl~~l~G~~----~p~~G~i~~~~~~~~~~~~ 72 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAGD------SWAFVGANGSGKSALARALAGEL----PLLSGERQSQFSHITRLSF 72 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCCC------EEEEECCCCCCHHHHHHHHhccC----CCCCceEEECCcccccCCH
Confidence 699999999995 457999999999999 99999999999999999999999 899998543221 10 0
Q ss_pred ---ccccCCCc---------------cchhccc-----------------cCCCc--ccccchhhHHHHHHHHHHHHHH-
Q 005138 84 ---ARCAGIEP---------------CTLIMDL-----------------EGTDG--RERGEDDTAFEKQSALFALAVS- 125 (712)
Q Consensus 84 ---~~~~~~~~---------------~~~v~d~-----------------~g~~~--~~r~~~~~~ferQrv~~A~Ala- 125 (712)
...+++.. ...+.+. .|+.. .......+..||||++||+|++
T Consensus 73 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 152 (490)
T PRK10938 73 EQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMS 152 (490)
T ss_pred HHHHHHhceeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 00111100 0011111 11110 0111223445999999999999
Q ss_pred --HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccccC
Q 005138 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (712)
Q Consensus 126 --~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~~ 203 (712)
++|||||||++||+.. .+.+.+++.++.++ |.|||+||||++.+...|++++++.+ |+++..|++++...
T Consensus 153 ~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~-g~tvii~tH~~~~~~~~~d~v~~l~~-G~i~~~~~~~~~~~ 224 (490)
T PRK10938 153 EPDLLILDEPFDGLDVAS------RQQLAELLASLHQS-GITLVLVLNRFDEIPDFVQFAGVLAD-CTLAETGEREEILQ 224 (490)
T ss_pred CCCEEEEcCCcccCCHHH------HHHHHHHHHHHHhc-CCeEEEEeCCHHHHHhhCCEEEEEEC-CEEEEeCCHHHHhc
Confidence 9999999999999999 99999999998765 89999999999999999999999988 99999888766544
No 132
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.90 E-value=3e-24 Score=235.80 Aligned_cols=164 Identities=18% Similarity=0.219 Sum_probs=126.1
Q ss_pred cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC---eee-----------c-ccc
Q 005138 23 GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG---IWM-----------A-RCA 87 (712)
Q Consensus 23 ~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g---i~~-----------~-~~~ 87 (712)
++++++|+++.|+ +++|+|||||||||||++|+|+. +|++|++...+. +.+ . ..+
T Consensus 39 ~l~~vsf~i~~Ge------i~~I~G~nGsGKSTLlr~L~Gl~----~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i 108 (382)
T TIGR03415 39 GVANASLDIEEGE------ICVLMGLSGSGKSSLLRAVNGLN----PVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRV 108 (382)
T ss_pred EEEeeEEEEcCCC------EEEEECCCCCcHHHHHHHHhCCC----CCCCcEEEECCEecccccccCCHHHHHHHhcCCE
Confidence 5899999999999 99999999999999999999999 899998544321 000 0 111
Q ss_pred C-------CCccchhccc-------cCCCccc--------------------ccchhhHHHHHHHHHHHHHH---HHhhh
Q 005138 88 G-------IEPCTLIMDL-------EGTDGRE--------------------RGEDDTAFEKQSALFALAVS---DIVLI 130 (712)
Q Consensus 88 ~-------~~~~~~v~d~-------~g~~~~~--------------------r~~~~~~ferQrv~~A~Ala---~iLlL 130 (712)
+ ..+...+.+. .|.+..+ .....+..|+||++||+|++ ++||+
T Consensus 109 ~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLl 188 (382)
T TIGR03415 109 SMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLM 188 (382)
T ss_pred EEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 1 1111111111 1211111 01122344999999999999 99999
Q ss_pred ccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccccC
Q 005138 131 NMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (712)
Q Consensus 131 DEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~~ 203 (712)
||||++||+.. +..+.+.+.++.++.|+|+||||||++++..+|+++++|.+ |+++..|++++++.
T Consensus 189 DEPts~LD~~~------r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~-G~iv~~g~~~ei~~ 254 (382)
T TIGR03415 189 DEPFSALDPLI------RTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEG-GRIIQHGTPEEIVL 254 (382)
T ss_pred ECCCccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEecCHHHHhh
Confidence 99999999998 99999999999776689999999999999999999999999 99999999877754
No 133
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=4.6e-24 Score=225.98 Aligned_cols=178 Identities=15% Similarity=0.113 Sum_probs=133.8
Q ss_pred ccEEEEeeeeeec---cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee-
Q 005138 8 CSTQLIDGDGTFN---VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW- 82 (712)
Q Consensus 8 ~~I~l~~l~k~y~---~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~- 82 (712)
.+|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+. +.
T Consensus 4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge------~~~i~G~nGaGKSTLl~~i~G~~----~p~~G~i~~~g~~i~~ 73 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGE------WVAIVGHNGSGKSTLAKLLNGLL----LPEAGTITVGGMVLSE 73 (279)
T ss_pred ceEEEEEEEEEeCCCCccceeeeEEEEcCCC------EEEEECCCCCcHHHHHHHHhcCC----CCCCcEEEECCEECCc
Confidence 3699999999995 247999999999999 99999999999999999999999 899998532221 00
Q ss_pred -----eccccCC--------Cccchhcccc-------CCCcc--------------------cccchhhHHHHHHHHHHH
Q 005138 83 -----MARCAGI--------EPCTLIMDLE-------GTDGR--------------------ERGEDDTAFEKQSALFAL 122 (712)
Q Consensus 83 -----~~~~~~~--------~~~~~v~d~~-------g~~~~--------------------~r~~~~~~ferQrv~~A~ 122 (712)
....+++ .....+.+.. +.+.. ......+..|+||++||+
T Consensus 74 ~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~lar 153 (279)
T PRK13635 74 ETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAG 153 (279)
T ss_pred CcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHH
Confidence 0001111 0001111111 11110 011122344999999999
Q ss_pred HHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcc
Q 005138 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (712)
Q Consensus 123 Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~ 199 (712)
|++ ++||+||||++||+.. ...+++++.++.++.|+|||+||||++.+.. |++++++.+ |+++..|++.
T Consensus 154 al~~~p~lllLDEPt~gLD~~~------~~~l~~~l~~l~~~~~~tilivsH~~~~~~~-~d~i~~l~~-G~i~~~g~~~ 225 (279)
T PRK13635 154 VLALQPDIIILDEATSMLDPRG------RREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNK-GEILEEGTPE 225 (279)
T ss_pred HHHcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEEC-CEEEEECCHH
Confidence 999 9999999999999998 9999999999987568999999999988874 999999988 9999998876
Q ss_pred cccC
Q 005138 200 QAHM 203 (712)
Q Consensus 200 e~~~ 203 (712)
+...
T Consensus 226 ~~~~ 229 (279)
T PRK13635 226 EIFK 229 (279)
T ss_pred HHhc
Confidence 6544
No 134
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=2.9e-24 Score=227.37 Aligned_cols=177 Identities=14% Similarity=0.132 Sum_probs=134.2
Q ss_pred cEEEEeeeeeecc------ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-e
Q 005138 9 STQLIDGDGTFNV------SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-I 81 (712)
Q Consensus 9 ~I~l~~l~k~y~~------~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i 81 (712)
.|++.|+++.|+. .+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+. +
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge------~~~l~G~nGsGKSTLl~~i~Gl~----~p~~G~i~~~g~~i 71 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGS------YTAFIGHTGSGKSTIMQLLNGLH----VPTQGSVRVDDTLI 71 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCc------EEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEEc
Confidence 4899999999952 37999999999999 99999999999999999999999 899998533211 0
Q ss_pred e----------eccccCC---Cc-----cchhcc-------------------------ccCCCc---ccccchhhHHHH
Q 005138 82 W----------MARCAGI---EP-----CTLIMD-------------------------LEGTDG---RERGEDDTAFEK 115 (712)
Q Consensus 82 ~----------~~~~~~~---~~-----~~~v~d-------------------------~~g~~~---~~r~~~~~~fer 115 (712)
. ....+++ .+ ...+.+ ..|+.. .......+..|+
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~ 151 (280)
T PRK13649 72 TSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQM 151 (280)
T ss_pred cccccccCHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHH
Confidence 0 0001111 00 001101 112211 111123345599
Q ss_pred HHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeE
Q 005138 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (712)
Q Consensus 116 Qrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I 192 (712)
||++||+|++ ++|||||||++||+.. ...+.+.+.++.+. |+|||+||||++.+...|++++++.+ |++
T Consensus 152 qrv~la~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~-G~i 223 (280)
T PRK13649 152 RRVAIAGILAMEPKILVLDEPTAGLDPKG------RKELMTLFKKLHQS-GMTIVLVTHLMDDVANYADFVYVLEK-GKL 223 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHC-CCEEEEEeccHHHHHHhCCEEEEEEC-CEE
Confidence 9999999999 9999999999999998 99999999998754 89999999999998888999999988 999
Q ss_pred EEecCcccccC
Q 005138 193 WDSVPKPQAHM 203 (712)
Q Consensus 193 ~~~g~~~e~~~ 203 (712)
...|++.+.+.
T Consensus 224 ~~~g~~~~~~~ 234 (280)
T PRK13649 224 VLSGKPKDIFQ 234 (280)
T ss_pred EEeCCHHHHhc
Confidence 98888766544
No 135
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=5e-24 Score=222.94 Aligned_cols=178 Identities=13% Similarity=0.129 Sum_probs=133.3
Q ss_pred cccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCC-----CCCeeeccCC
Q 005138 7 CCSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA-----FKGRSQTTKG 80 (712)
Q Consensus 7 ~~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p-----~sG~~~~t~g 80 (712)
+++|++.|+++.|+ ..+++++++++..|+ +++|+|+|||||||||++|+|+. +| ++|++...+.
T Consensus 10 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge------~~~i~G~nGsGKSTLl~~i~Gl~----~~~~~~~~~G~i~~~g~ 79 (258)
T PRK14268 10 QPQIKVENLNLWYGEKQALKNVSMQIPKNS------VTALIGPSGCGKSTFIRCLNRMN----DLIKNCRIEGKVSIEGE 79 (258)
T ss_pred ceeEEEeeeEEEeCCeeeeeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHhcCC----CcccCCCcceEEEECCE
Confidence 56899999999995 357999999999999 99999999999999999999998 54 7887432211
Q ss_pred -ee--------eccccCC-------Cc------cchhc------------------cccCCCc------ccccchhhHHH
Q 005138 81 -IW--------MARCAGI-------EP------CTLIM------------------DLEGTDG------RERGEDDTAFE 114 (712)
Q Consensus 81 -i~--------~~~~~~~-------~~------~~~v~------------------d~~g~~~------~~r~~~~~~fe 114 (712)
+. +...+++ .+ ..+.. +..|+.. .......+..|
T Consensus 80 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~ 159 (258)
T PRK14268 80 DIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQ 159 (258)
T ss_pred EcccccchHHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHH
Confidence 00 0011111 00 00000 1111100 01112234559
Q ss_pred HHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCe
Q 005138 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (712)
Q Consensus 115 rQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~ 191 (712)
+||++||+|++ ++||+||||++||+.. ...+.+.+.++. + ++|||+||||++.+...|++++++.+ |+
T Consensus 160 ~qrv~laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~l~-~-~~tiiivsH~~~~~~~~~d~i~~l~~-G~ 230 (258)
T PRK14268 160 QQRLCIARTLAVKPKIILFDEPTSALDPIS------TARIEDLIMNLK-K-DYTIVIVTHNMQQAARISDYTGFFLM-GE 230 (258)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHH------HHHHHHHHHHHh-h-CCEEEEEECCHHHHHHhCCEEEEEEC-CE
Confidence 99999999999 9999999999999998 999999999985 3 79999999999998888999999988 99
Q ss_pred EEEecCcccccC
Q 005138 192 IWDSVPKPQAHM 203 (712)
Q Consensus 192 I~~~g~~~e~~~ 203 (712)
++..|++++.+.
T Consensus 231 i~~~~~~~~~~~ 242 (258)
T PRK14268 231 LIEFGQTRQIFH 242 (258)
T ss_pred EEEeCCHHHHhc
Confidence 999988766543
No 136
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=3.5e-24 Score=226.26 Aligned_cols=177 Identities=14% Similarity=0.128 Sum_probs=132.2
Q ss_pred cEEEEeeeeeec--cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee----
Q 005138 9 STQLIDGDGTFN--VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW---- 82 (712)
Q Consensus 9 ~I~l~~l~k~y~--~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~---- 82 (712)
||++.|+++.|. ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+...
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~ 70 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGE------YIGIIGKNGSGKSTLALHLNGLL----RPQKGKVLVSGIDTGDFS 70 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCC------EEEEECCCCCCHHHHHHHHhcCC----CCCCceEEECCEECCccc
Confidence 488999999994 347999999999999 99999999999999999999998 89999853221100
Q ss_pred ----eccccCC---C-----ccchhcccc-------CCCcc--------------------cccchhhHHHHHHHHHHHH
Q 005138 83 ----MARCAGI---E-----PCTLIMDLE-------GTDGR--------------------ERGEDDTAFEKQSALFALA 123 (712)
Q Consensus 83 ----~~~~~~~---~-----~~~~v~d~~-------g~~~~--------------------~r~~~~~~ferQrv~~A~A 123 (712)
+...+++ . ....+.+.. +.+.. ......+..|+||++||+|
T Consensus 71 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lara 150 (274)
T PRK13644 71 KLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGI 150 (274)
T ss_pred cHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHH
Confidence 0001111 0 000111110 11100 0011223449999999999
Q ss_pred HH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCccc
Q 005138 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (712)
Q Consensus 124 la---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e 200 (712)
++ ++||+||||++||+.. +..+++.+.++.++ |+|||++|||++.+. .|++++++.+ |+++..|++.+
T Consensus 151 l~~~p~lllLDEPt~gLD~~~------~~~l~~~l~~l~~~-g~til~~tH~~~~~~-~~d~v~~l~~-G~i~~~g~~~~ 221 (274)
T PRK13644 151 LTMEPECLIFDEVTSMLDPDS------GIAVLERIKKLHEK-GKTIVYITHNLEELH-DADRIIVMDR-GKIVLEGEPEN 221 (274)
T ss_pred HHcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHhC-CCEEEEEecCHHHHh-hCCEEEEEEC-CEEEEECCHHH
Confidence 99 9999999999999998 99999999998754 999999999998885 5999999988 99999998776
Q ss_pred ccCC
Q 005138 201 AHME 204 (712)
Q Consensus 201 ~~~~ 204 (712)
.+..
T Consensus 222 ~~~~ 225 (274)
T PRK13644 222 VLSD 225 (274)
T ss_pred HhcC
Confidence 6543
No 137
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=2.1e-24 Score=227.39 Aligned_cols=175 Identities=16% Similarity=0.160 Sum_probs=129.7
Q ss_pred EEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee------
Q 005138 11 QLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW------ 82 (712)
Q Consensus 11 ~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~------ 82 (712)
.+.++++.|+ ..++++++++++.|+ +++|+|||||||||||++|+|+. +|++|++...+. +.
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge------~~~l~G~nGsGKSTLl~~L~Gl~----~p~~G~i~i~g~~~~~~~~~~ 95 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGE------IFVIMGLSGSGKSTLLRCINRLI----EPTSGKVLIDGQDIAAMSRKE 95 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHhcCC----CCCCeEEEECCEEccccChhh
Confidence 4567888885 346999999999999 99999999999999999999999 899998432210 00
Q ss_pred ----eccccC-------CCccchhcccc-------CCCcc--------------------cccchhhHHHHHHHHHHHHH
Q 005138 83 ----MARCAG-------IEPCTLIMDLE-------GTDGR--------------------ERGEDDTAFEKQSALFALAV 124 (712)
Q Consensus 83 ----~~~~~~-------~~~~~~v~d~~-------g~~~~--------------------~r~~~~~~ferQrv~~A~Al 124 (712)
....++ ..+...+.+.. +.... ......+..|+||++||+|+
T Consensus 96 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral 175 (269)
T cd03294 96 LRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARAL 175 (269)
T ss_pred hhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 000111 11111111110 11100 00112234499999999999
Q ss_pred H---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccc
Q 005138 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (712)
Q Consensus 125 a---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~ 201 (712)
+ ++|||||||++||+.. ...+.+.+.++.++.|.|+|++|||++.+...|++++++.+ |+++..|++.+.
T Consensus 176 ~~~p~illLDEPt~~LD~~~------~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~-G~i~~~g~~~~~ 248 (269)
T cd03294 176 AVDPDILLMDEAFSALDPLI------RREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKD-GRLVQVGTPEEI 248 (269)
T ss_pred hcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEEC-CEEEEeCCHHHH
Confidence 9 9999999999999998 99999999998755589999999999988888999999988 999988876654
Q ss_pred c
Q 005138 202 H 202 (712)
Q Consensus 202 ~ 202 (712)
+
T Consensus 249 ~ 249 (269)
T cd03294 249 L 249 (269)
T ss_pred H
Confidence 4
No 138
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.90 E-value=5.1e-24 Score=222.39 Aligned_cols=178 Identities=13% Similarity=0.104 Sum_probs=135.0
Q ss_pred ccEEEEeeeeeeccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCC----CCCeeeccC----
Q 005138 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA----FKGRSQTTK---- 79 (712)
Q Consensus 8 ~~I~l~~l~k~y~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p----~sG~~~~t~---- 79 (712)
.+|++.|+++.|+..+++++++++..|+ +++|+||||||||||+++|+|+. +| ++|++...+
T Consensus 3 ~~l~~~~l~~~~~~~il~~vsl~i~~Ge------~~~l~G~nGsGKSTLl~~l~Gl~----~~~~~~~~G~i~~~g~~i~ 72 (254)
T PRK10418 3 QQIELRNIALQAAQPLVHGVSLTLQRGR------VLALVGGSGSGKSLTCAAALGIL----PAGVRQTAGRVLLDGKPVA 72 (254)
T ss_pred cEEEEeCeEEEeccceecceEEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCCCcCCEEEECCeecc
Confidence 3699999999995557999999999999 99999999999999999999998 77 889753221
Q ss_pred -------Cee-eccccC--CCccchh-----------------------ccccCCCc-----ccccchhhHHHHHHHHHH
Q 005138 80 -------GIW-MARCAG--IEPCTLI-----------------------MDLEGTDG-----RERGEDDTAFEKQSALFA 121 (712)
Q Consensus 80 -------gi~-~~~~~~--~~~~~~v-----------------------~d~~g~~~-----~~r~~~~~~ferQrv~~A 121 (712)
++. +..... +.+...+ ++..|+.. .......+..|+||++||
T Consensus 73 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~la 152 (254)
T PRK10418 73 PCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIA 152 (254)
T ss_pred ccccccceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHH
Confidence 111 111100 1110000 00011111 011123345699999999
Q ss_pred HHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCc
Q 005138 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (712)
Q Consensus 122 ~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~ 198 (712)
+|++ ++|||||||++||+.. ...+.+.+.++.++.|.|||++||+++.+...|++++++.+ |+++..+++
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~------~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~-G~i~~~~~~ 225 (254)
T PRK10418 153 LALLCEAPFIIADEPTTDLDVVA------QARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSH-GRIVEQGDV 225 (254)
T ss_pred HHHhcCCCEEEEeCCCcccCHHH------HHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEEC-CEEEEecCH
Confidence 9999 9999999999999998 99999999998765589999999999998888999999988 999998887
Q ss_pred cccc
Q 005138 199 PQAH 202 (712)
Q Consensus 199 ~e~~ 202 (712)
++.+
T Consensus 226 ~~~~ 229 (254)
T PRK10418 226 ETLF 229 (254)
T ss_pred HHHh
Confidence 6654
No 139
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.90 E-value=4.1e-24 Score=233.69 Aligned_cols=174 Identities=15% Similarity=0.105 Sum_probs=130.7
Q ss_pred eeeeeeccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee-----------
Q 005138 14 DGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW----------- 82 (712)
Q Consensus 14 ~l~k~y~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~----------- 82 (712)
|+++.|+...+ ++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+...
T Consensus 4 ~l~~~~~~~~~-~isl~i~~Ge------i~~l~G~nGsGKSTLl~~iaGl~----~p~~G~I~~~g~~i~~~~~~~~~~~ 72 (354)
T TIGR02142 4 RFSKRLGDFSL-DADFTLPGQG------VTAIFGRSGSGKTTLIRLIAGLT----RPDEGEIVLNGRTLFDSRKGIFLPP 72 (354)
T ss_pred EEEEEECCEEE-EEEEEECCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEECccCccccccch
Confidence 78999965446 8999999999 99999999999999999999999 89999853322100
Q ss_pred eccccC-------CCccchhcccc-----------------------CCCc--ccccchhhHHHHHHHHHHHHHH---HH
Q 005138 83 MARCAG-------IEPCTLIMDLE-----------------------GTDG--RERGEDDTAFEKQSALFALAVS---DI 127 (712)
Q Consensus 83 ~~~~~~-------~~~~~~v~d~~-----------------------g~~~--~~r~~~~~~ferQrv~~A~Ala---~i 127 (712)
....++ ..+...+.+.. |+.. .......+..|+||++||+|++ ++
T Consensus 73 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~l 152 (354)
T TIGR02142 73 EKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRL 152 (354)
T ss_pred hhCCeEEEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 001111 11111121111 1100 0011122344999999999999 99
Q ss_pred hhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccccCCc
Q 005138 128 VLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHMET 205 (712)
Q Consensus 128 LlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~~~~ 205 (712)
|||||||++||+.. +..+.+.+.++.++.|+|+|+||||++++...|++++++.+ |+++..|++.+++...
T Consensus 153 llLDEPts~LD~~~------~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~-G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 153 LLMDEPLAALDDPR------KYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLED-GRVAAAGPIAEVWASP 223 (354)
T ss_pred EEEcCCCcCCCHHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeC-CEEEEECCHHHHhcCc
Confidence 99999999999998 99999999998765689999999999998888999999988 9999999887776543
No 140
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.90 E-value=4.2e-24 Score=220.11 Aligned_cols=180 Identities=13% Similarity=0.112 Sum_probs=142.8
Q ss_pred cccEEEEeeeeeecc----------ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeee
Q 005138 7 CCSTQLIDGDGTFNV----------SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ 76 (712)
Q Consensus 7 ~~~I~l~~l~k~y~~----------~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~ 76 (712)
++++++.|+.+.|.. .++++|+|+|..|+ ++||+|.||||||||-|+|.|+. +|++|++.
T Consensus 2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge------~~glVGESG~GKSTlgr~i~~L~----~pt~G~i~ 71 (268)
T COG4608 2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGE------TLGLVGESGCGKSTLGRLILGLE----EPTSGEIL 71 (268)
T ss_pred CceEEEeccEEEEecccccCcccceEEecceeEEEcCCC------EEEEEecCCCCHHHHHHHHHcCc----CCCCceEE
Confidence 357999999999931 46899999999999 99999999999999999999999 89999854
Q ss_pred ccCC-ee-eccccCCCccchhccccCCCcccc---cchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhH
Q 005138 77 TTKG-IW-MARCAGIEPCTLIMDLEGTDGRER---GEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLL 148 (712)
Q Consensus 77 ~t~g-i~-~~~~~~~~~~~~v~d~~g~~~~~r---~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~ 148 (712)
..+. +. +......+...-+++..|++.... ....++.|+||+.||+|++ +++++|||++.||.-. +
T Consensus 72 f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSi------q 145 (268)
T COG4608 72 FEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSV------Q 145 (268)
T ss_pred EcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhH------H
Confidence 3322 11 110000011112233444433211 1233566999999999999 9999999999999877 9
Q ss_pred HHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccccC
Q 005138 149 KTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (712)
Q Consensus 149 ~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~~ 203 (712)
.+++.++.++.++.|.|.+|+|||++.+..+|+++.+|.. |+|+..|+..+++.
T Consensus 146 aqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~-G~iVE~g~~~~~~~ 199 (268)
T COG4608 146 AQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYL-GKIVEIGPTEEVFS 199 (268)
T ss_pred HHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEec-CceeEecCHHHHhh
Confidence 9999999999988999999999999999999999999988 99999999888876
No 141
>PRK10908 cell division protein FtsE; Provisional
Probab=99.90 E-value=5.2e-24 Score=217.68 Aligned_cols=168 Identities=14% Similarity=0.158 Sum_probs=126.2
Q ss_pred cEEEEeeeeee-c-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee---
Q 005138 9 STQLIDGDGTF-N-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW--- 82 (712)
Q Consensus 9 ~I~l~~l~k~y-~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~--- 82 (712)
||++.|+++.| + ..+++++++++..|+ +++|+||||||||||+++|+|+. +|++|++...+. +.
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge------~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~i~~~~ 70 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGE------MAFLTGHSGAGKSTLLKLICGIE----RPSAGKIWFSGHDITRLK 70 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEEcccCC
Confidence 48899999999 4 457999999999999 99999999999999999999999 899998543221 00
Q ss_pred ------eccccCC-------Cccchhccc-------cCCCccc--------------------ccchhhHHHHHHHHHHH
Q 005138 83 ------MARCAGI-------EPCTLIMDL-------EGTDGRE--------------------RGEDDTAFEKQSALFAL 122 (712)
Q Consensus 83 ------~~~~~~~-------~~~~~v~d~-------~g~~~~~--------------------r~~~~~~ferQrv~~A~ 122 (712)
+...+++ .+...+.+. .+....+ .....+..|+||+++|+
T Consensus 71 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 150 (222)
T PRK10908 71 NREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIAR 150 (222)
T ss_pred hhHHHHHHhheEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHH
Confidence 0011111 011111111 0111000 01122334999999999
Q ss_pred HHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEE
Q 005138 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (712)
Q Consensus 123 Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~ 194 (712)
|++ ++||+||||++||+.. ...+.+.+.++.++ +.|+|++|||++.+...|++++++.+ |+++.
T Consensus 151 al~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~-G~i~~ 217 (222)
T PRK10908 151 AVVNKPAVLLADEPTGNLDDAL------SEGILRLFEEFNRV-GVTVLMATHDIGLISRRSYRMLTLSD-GHLHG 217 (222)
T ss_pred HHHcCCCEEEEeCCCCcCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEEC-CEEcc
Confidence 999 9999999999999998 99999999998654 89999999999999888999999988 99864
No 142
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=3.6e-24 Score=227.80 Aligned_cols=178 Identities=14% Similarity=0.121 Sum_probs=134.3
Q ss_pred cEEEEeeeeeecc------ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-e
Q 005138 9 STQLIDGDGTFNV------SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-I 81 (712)
Q Consensus 9 ~I~l~~l~k~y~~------~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i 81 (712)
.|++.|+++.|+. .+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+. +
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge------~~~l~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~i 75 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNK------VTCVIGTTGSGKSTMIQLTNGLI----ISETGQTIVGDYAI 75 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCC------EEEEECCCCCCHHHHHHHHhcCC----CCCCceEEECCEEc
Confidence 5899999999953 27999999999999 99999999999999999999999 899998532110 0
Q ss_pred -----------eeccccCC---Cc-----cchhcc-------------------------ccCCCc---ccccchhhHHH
Q 005138 82 -----------WMARCAGI---EP-----CTLIMD-------------------------LEGTDG---RERGEDDTAFE 114 (712)
Q Consensus 82 -----------~~~~~~~~---~~-----~~~v~d-------------------------~~g~~~---~~r~~~~~~fe 114 (712)
.+...+++ .+ ...+.+ ..+++. .......+..|
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq 155 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQ 155 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHH
Confidence 00001111 00 001100 111110 01112234559
Q ss_pred HHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCe
Q 005138 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (712)
Q Consensus 115 rQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~ 191 (712)
+||++||+|++ ++|||||||++||+.. ...+++++.++.++.|+|||+||||++.+...|++++++.+ |+
T Consensus 156 ~qrv~laral~~~p~lLlLDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~-G~ 228 (289)
T PRK13645 156 KRRVALAGIIAMDGNTLVLDEPTGGLDPKG------EEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHE-GK 228 (289)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEEC-CE
Confidence 99999999999 9999999999999998 99999999998765589999999999988888999999988 99
Q ss_pred EEEecCcccccC
Q 005138 192 IWDSVPKPQAHM 203 (712)
Q Consensus 192 I~~~g~~~e~~~ 203 (712)
++..|++.+.+.
T Consensus 229 i~~~g~~~~~~~ 240 (289)
T PRK13645 229 VISIGSPFEIFS 240 (289)
T ss_pred EEEeCCHHHHhc
Confidence 999888766544
No 143
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=6.1e-24 Score=221.01 Aligned_cols=176 Identities=15% Similarity=0.135 Sum_probs=131.8
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCC-----CCCeeeccC--
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA-----FKGRSQTTK-- 79 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p-----~sG~~~~t~-- 79 (712)
++|++.|+++.|+ ..+++++++++..|+ +++|+||||||||||+++|+|+. +| ++|++...+
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge------~~~i~G~nGsGKSTLl~~i~G~~----~~~~~~~~~G~i~~~g~~ 71 (250)
T PRK14247 2 NKIEIRDLKVSFGQVEVLDGVNLEIPDNT------ITALMGPSGSGKSTLLRVFNRLI----ELYPEARVSGEVYLDGQD 71 (250)
T ss_pred ceEEEEeeEEEECCeeeeecceeEEcCCC------EEEEECCCCCCHHHHHHHHhccC----CCCCCCCCceEEEECCEE
Confidence 4799999999995 457999999999999 99999999999999999999998 53 688743221
Q ss_pred -----------Cee-eccccCCCccchhccc---------------------------cCCCc------ccccchhhHHH
Q 005138 80 -----------GIW-MARCAGIEPCTLIMDL---------------------------EGTDG------RERGEDDTAFE 114 (712)
Q Consensus 80 -----------gi~-~~~~~~~~~~~~v~d~---------------------------~g~~~------~~r~~~~~~fe 114 (712)
++. +.......+...+.+. .|+.. .......+..|
T Consensus 72 i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~ 151 (250)
T PRK14247 72 IFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQ 151 (250)
T ss_pred CCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHH
Confidence 110 0111000111111110 01110 01112234559
Q ss_pred HHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCe
Q 005138 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (712)
Q Consensus 115 rQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~ 191 (712)
+||+++|+|++ +++|+||||++||+.. ...+.+.+.++. + |.|+|++|||++.+...|++++++.+ |+
T Consensus 152 ~qrv~laral~~~p~lllLDEP~~~LD~~~------~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~-G~ 222 (250)
T PRK14247 152 QQRLCIARALAFQPEVLLADEPTANLDPEN------TAKIESLFLELK-K-DMTIVLVTHFPQQAARISDYVAFLYK-GQ 222 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEEC-Ce
Confidence 99999999999 9999999999999998 999999999985 3 79999999999998888999999988 99
Q ss_pred EEEecCccccc
Q 005138 192 IWDSVPKPQAH 202 (712)
Q Consensus 192 I~~~g~~~e~~ 202 (712)
+...|++.+++
T Consensus 223 i~~~g~~~~~~ 233 (250)
T PRK14247 223 IVEWGPTREVF 233 (250)
T ss_pred EEEECCHHHHH
Confidence 99988876654
No 144
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.90 E-value=4.3e-24 Score=210.36 Aligned_cols=162 Identities=14% Similarity=0.114 Sum_probs=122.3
Q ss_pred EEEEeeeeeecc---ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccc
Q 005138 10 TQLIDGDGTFNV---SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC 86 (712)
Q Consensus 10 I~l~~l~k~y~~---~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~ 86 (712)
|++.|+++.|+. .+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+ ......
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge------~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~g-~~~~~~ 69 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGE------SLAIIGPSGSGKSTLARLILGLL----RPTSGRVRLDG-ADISQW 69 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCC------EEEEECCCCCCHHHHHHHHHhcc----CCCCCeEEECC-EEcccC
Confidence 468999999952 47999999999999 99999999999999999999999 89999854322 111000
Q ss_pred c---CCCccchhccccCCCcccccch--hhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHh
Q 005138 87 A---GIEPCTLIMDLEGTDGRERGED--DTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRL 158 (712)
Q Consensus 87 ~---~~~~~~~v~d~~g~~~~~r~~~--~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L 158 (712)
. ......++.+....... +..+ .+..|+||++||+|++ +++|+||||++||+.. +..+.+.+.++
T Consensus 70 ~~~~~~~~i~~~~q~~~~~~~-tv~~~lLS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~------~~~l~~~l~~~ 142 (173)
T cd03246 70 DPNELGDHVGYLPQDDELFSG-SIAENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEG------ERALNQAIAAL 142 (173)
T ss_pred CHHHHHhheEEECCCCccccC-cHHHHCcCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHH------HHHHHHHHHHH
Confidence 0 00011111111111111 1111 4677999999999999 9999999999999998 99999999998
Q ss_pred hCCCCceEEEEecCCCCcccccccccceecCCeE
Q 005138 159 FSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (712)
Q Consensus 159 ~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I 192 (712)
.++ |+|+|+||||++.+. .|++++++.+ |++
T Consensus 143 ~~~-~~tii~~sh~~~~~~-~~d~v~~l~~-G~i 173 (173)
T cd03246 143 KAA-GATRIVIAHRPETLA-SADRILVLED-GRV 173 (173)
T ss_pred HhC-CCEEEEEeCCHHHHH-hCCEEEEEEC-CCC
Confidence 754 899999999998774 6899888887 764
No 145
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.90 E-value=4.6e-24 Score=224.12 Aligned_cols=178 Identities=15% Similarity=0.224 Sum_probs=133.3
Q ss_pred EEEEeeeeeecc-----ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCC-----CCCeeeccC
Q 005138 10 TQLIDGDGTFNV-----SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA-----FKGRSQTTK 79 (712)
Q Consensus 10 I~l~~l~k~y~~-----~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p-----~sG~~~~t~ 79 (712)
++++|++..|.. .++++|+|+++.|+ ++||+|.+|||||||.+.|+|++ ++ .+|++...+
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE------~lgiVGESGsGKS~~~~aim~ll----p~~~~~i~~G~i~f~g 71 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGE------ILGIVGESGSGKSVLAKAIMGLL----PKPNARIVGGEILFDG 71 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCc------EEEEEcCCCCCHHHHHHHHHhcc----CCCCCeEeeeEEEECC
Confidence 689999999942 47999999999999 99999999999999999999999 42 233321111
Q ss_pred C-e-ee---------ccccC---------CCccchh---------------------------ccccCCCccccc-----
Q 005138 80 G-I-WM---------ARCAG---------IEPCTLI---------------------------MDLEGTDGRERG----- 107 (712)
Q Consensus 80 g-i-~~---------~~~~~---------~~~~~~v---------------------------~d~~g~~~~~r~----- 107 (712)
. + .+ .+.++ ..+...+ ++..|++..++.
T Consensus 72 ~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP 151 (316)
T COG0444 72 KDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP 151 (316)
T ss_pred cccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC
Confidence 1 0 00 00000 0111100 111122211110
Q ss_pred chhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccccccc
Q 005138 108 EDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPV 184 (712)
Q Consensus 108 ~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ 184 (712)
-..++.|+|||.||+|++ ++||.||||++||... +.+|+++++++.++.|+++||||||+..+..+||++.
T Consensus 152 helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~------QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~ 225 (316)
T COG0444 152 HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTV------QAQILDLLKELQREKGTALILITHDLGVVAEIADRVA 225 (316)
T ss_pred cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEE
Confidence 011233999999999999 9999999999999998 9999999999998889999999999999999999999
Q ss_pred ceecCCeEEEecCcccccCC
Q 005138 185 LREDIQKIWDSVPKPQAHME 204 (712)
Q Consensus 185 ll~~~G~I~~~g~~~e~~~~ 204 (712)
+|.. |+|++.|+..+++.+
T Consensus 226 VMYa-G~iVE~g~~~~i~~~ 244 (316)
T COG0444 226 VMYA-GRIVEEGPVEEIFKN 244 (316)
T ss_pred EEEC-cEEEEeCCHHHHhcC
Confidence 9999 999999998877754
No 146
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.90 E-value=7.4e-24 Score=223.06 Aligned_cols=178 Identities=14% Similarity=0.179 Sum_probs=134.7
Q ss_pred ccEEEEeeeeeec----------cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeec
Q 005138 8 CSTQLIDGDGTFN----------VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT 77 (712)
Q Consensus 8 ~~I~l~~l~k~y~----------~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~ 77 (712)
++|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++..
T Consensus 2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~----~p~sG~i~~ 71 (268)
T PRK10419 2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGE------TVALLGRSGCGKSTLARLLVGLE----SPSQGNVSW 71 (268)
T ss_pred ceEEEeceEEEecCCccccccCceeeEeceeEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEE
Confidence 4699999999995 347999999999999 99999999999999999999998 899998532
Q ss_pred cCC-ee---------eccccC---------CCccchhccc--------------------------cCCCc---ccccch
Q 005138 78 TKG-IW---------MARCAG---------IEPCTLIMDL--------------------------EGTDG---RERGED 109 (712)
Q Consensus 78 t~g-i~---------~~~~~~---------~~~~~~v~d~--------------------------~g~~~---~~r~~~ 109 (712)
.+. +. ....++ +.+...+.+. .|+.. ......
T Consensus 72 ~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 151 (268)
T PRK10419 72 RGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQ 151 (268)
T ss_pred CCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCcc
Confidence 211 00 000111 1110001000 01110 011122
Q ss_pred hhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccce
Q 005138 110 DTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLR 186 (712)
Q Consensus 110 ~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll 186 (712)
.+..|+||++||+|++ ++||+||||++||+.. ...+.+.+.++.++.|.|+|++||+++.+...|++++++
T Consensus 152 LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~------~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l 225 (268)
T PRK10419 152 LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVL------QAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVM 225 (268)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHH------HHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEE
Confidence 3445999999999999 9999999999999998 999999999987655899999999999998889999999
Q ss_pred ecCCeEEEecCccccc
Q 005138 187 EDIQKIWDSVPKPQAH 202 (712)
Q Consensus 187 ~~~G~I~~~g~~~e~~ 202 (712)
.+ |++...|++++..
T Consensus 226 ~~-G~i~~~g~~~~~~ 240 (268)
T PRK10419 226 DN-GQIVETQPVGDKL 240 (268)
T ss_pred EC-CEEeeeCChhhcc
Confidence 88 9999998876654
No 147
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.90 E-value=5.4e-24 Score=215.80 Aligned_cols=165 Identities=19% Similarity=0.210 Sum_probs=123.0
Q ss_pred EEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee-----
Q 005138 10 TQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW----- 82 (712)
Q Consensus 10 I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~----- 82 (712)
|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+. +.
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G~------~~~l~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~ 70 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGE------VVVIIGPSGSGKSTLLRCINLLE----EPDSGTIIIDGLKLTDDKKN 70 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEECCccchh
Confidence 46889999995 457999999999999 99999999999999999999999 899998532211 10
Q ss_pred ---eccccCC-------Cccchhcccc--------CCCcc--------------------cccchhhHHHHHHHHHHHHH
Q 005138 83 ---MARCAGI-------EPCTLIMDLE--------GTDGR--------------------ERGEDDTAFEKQSALFALAV 124 (712)
Q Consensus 83 ---~~~~~~~-------~~~~~v~d~~--------g~~~~--------------------~r~~~~~~ferQrv~~A~Al 124 (712)
....+++ .+...+.+.. +.... ......+..|+||+++|+|+
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 150 (213)
T cd03262 71 INELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARAL 150 (213)
T ss_pred HHHHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHH
Confidence 0011111 1111111111 11100 00111234499999999999
Q ss_pred H---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeE
Q 005138 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (712)
Q Consensus 125 a---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I 192 (712)
+ ++||+||||++||+.. ...+.+.+.++.+. |+|+|++|||++.+...|++++++.+ |++
T Consensus 151 ~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~~~-~~tvi~~sh~~~~~~~~~d~i~~l~~-g~i 213 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPEL------VGEVLDVMKDLAEE-GMTMVVVTHEMGFAREVADRVIFMDD-GRI 213 (213)
T ss_pred hcCCCEEEEeCCccCCCHHH------HHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEeC-CcC
Confidence 9 9999999999999998 99999999998764 89999999999999888999999987 764
No 148
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=6.2e-24 Score=215.94 Aligned_cols=164 Identities=18% Similarity=0.185 Sum_probs=121.6
Q ss_pred eeeeeeccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee-----------
Q 005138 14 DGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW----------- 82 (712)
Q Consensus 14 ~l~k~y~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~----------- 82 (712)
+++|+|+...+ ++++++.. + +++|+|||||||||||++|+|+. +|++|++...+...
T Consensus 5 ~l~~~~~~~~~-~vsl~i~~-e------~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~~~~~~ 72 (214)
T cd03297 5 DIEKRLPDFTL-KIDFDLNE-E------VTGIFGASGAGKSTLLRCIAGLE----KPDGGTIVLNGTVLFDSRKKINLPP 72 (214)
T ss_pred eeeEecCCeee-CceEEEcc-e------eEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEecccccchhhhhh
Confidence 89999965545 99999999 9 99999999999999999999999 89999853322100
Q ss_pred eccccC-------CCccchhcccc-----------------------CCCc--ccccchhhHHHHHHHHHHHHHH---HH
Q 005138 83 MARCAG-------IEPCTLIMDLE-----------------------GTDG--RERGEDDTAFEKQSALFALAVS---DI 127 (712)
Q Consensus 83 ~~~~~~-------~~~~~~v~d~~-----------------------g~~~--~~r~~~~~~ferQrv~~A~Ala---~i 127 (712)
....++ ..+...+.+.. |+.. .......+..|+||++||+|++ ++
T Consensus 73 ~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 152 (214)
T cd03297 73 QQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPEL 152 (214)
T ss_pred HhhcEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 000111 11111111110 1100 0011122334999999999999 99
Q ss_pred hhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEec
Q 005138 128 VLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 128 LlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g 196 (712)
+|+||||++||+.. .+.+.+.+.++.++.|+|+|++|||++.+...|++++++.+ |+++..|
T Consensus 153 lllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~-G~i~~~g 214 (214)
T cd03297 153 LLLDEPFSALDRAL------RLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMED-GRLQYIG 214 (214)
T ss_pred EEEcCCcccCCHHH------HHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999998 99999999998765589999999999998888999999988 9987654
No 149
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.90 E-value=5.2e-24 Score=216.07 Aligned_cols=165 Identities=16% Similarity=0.239 Sum_probs=122.5
Q ss_pred EEEEeeeeeec--cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee----
Q 005138 10 TQLIDGDGTFN--VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW---- 82 (712)
Q Consensus 10 I~l~~l~k~y~--~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~---- 82 (712)
|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+. +.
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~------~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~i~~~~~ 70 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGE------FVFLVGPSGAGKSTLLKLIYKEE----LPTSGTIRVNGQDVSDLRG 70 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHhcCC----CCCceEEEECCEEcccCCH
Confidence 46889999994 357999999999999 99999999999999999999998 899998533211 00
Q ss_pred -----eccccC-------CCccchhccc-------c------------------CCCcc--cccchhhHHHHHHHHHHHH
Q 005138 83 -----MARCAG-------IEPCTLIMDL-------E------------------GTDGR--ERGEDDTAFEKQSALFALA 123 (712)
Q Consensus 83 -----~~~~~~-------~~~~~~v~d~-------~------------------g~~~~--~r~~~~~~ferQrv~~A~A 123 (712)
....++ ..+...+.+. . |+... ......+..|+||+++|+|
T Consensus 71 ~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lara 150 (214)
T cd03292 71 RAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARA 150 (214)
T ss_pred HHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHH
Confidence 000111 1111111110 0 11100 0011223449999999999
Q ss_pred HH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeE
Q 005138 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (712)
Q Consensus 124 la---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I 192 (712)
++ +++|+||||++||+.. .+.+.+.+.++.++ |+|+|+||||++.+...|++++++.+ |++
T Consensus 151 l~~~p~llllDEPt~~LD~~~------~~~~~~~l~~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~-G~~ 214 (214)
T cd03292 151 IVNSPTILIADEPTGNLDPDT------TWEIMNLLKKINKA-GTTVVVATHAKELVDTTRHRVIALER-GKL 214 (214)
T ss_pred HHcCCCEEEEeCCCCcCCHHH------HHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEeC-CcC
Confidence 99 9999999999999998 99999999998654 89999999999988888999988887 764
No 150
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.90 E-value=6.9e-24 Score=222.14 Aligned_cols=177 Identities=14% Similarity=0.152 Sum_probs=132.2
Q ss_pred cccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccC-----CCCCeeeccCC
Q 005138 7 CCSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD-----AFKGRSQTTKG 80 (712)
Q Consensus 7 ~~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~-----p~sG~~~~t~g 80 (712)
..+|++.|+++.|+ ..+++++++++..|+ +++|+||||||||||+++|+|+. . |++|++...+.
T Consensus 11 ~~~l~~~~l~~~~~~~~il~~isl~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~----~~~p~~p~~G~i~~~g~ 80 (260)
T PRK10744 11 PSKIQVRNLNFYYGKFHALKNINLDIAKNQ------VTAFIGPSGCGKSTLLRTFNRMY----ELYPEQRAEGEILLDGE 80 (260)
T ss_pred CceEEEEEEEEEeCCeEEeeceeEEEcCCC------EEEEECCCCCCHHHHHHHHhccc----ccCCCCCcceEEEECCE
Confidence 34799999999995 347999999999999 99999999999999999999997 4 47887432210
Q ss_pred -ee--------eccccCC-------Cccchhcccc--------CCCc------------------------ccccchhhH
Q 005138 81 -IW--------MARCAGI-------EPCTLIMDLE--------GTDG------------------------RERGEDDTA 112 (712)
Q Consensus 81 -i~--------~~~~~~~-------~~~~~v~d~~--------g~~~------------------------~~r~~~~~~ 112 (712)
+. +.+.+++ .+ ..+.+.. +... .......+.
T Consensus 81 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 159 (260)
T PRK10744 81 NILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSG 159 (260)
T ss_pred EccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCH
Confidence 00 0011111 01 1111110 1000 001112344
Q ss_pred HHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecC
Q 005138 113 FEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDI 189 (712)
Q Consensus 113 ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~ 189 (712)
.|+||++||+|++ ++||+||||++||+.. ...+.+.+.++. + +.|+|++||+++.+...|++++++.+
T Consensus 160 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~------~~~l~~~L~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~- 230 (260)
T PRK10744 160 GQQQRLCIARGIAIRPEVLLLDEPCSALDPIS------TGRIEELITELK-Q-DYTVVIVTHNMQQAARCSDYTAFMYL- 230 (260)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCCCccCCHHH------HHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEEC-
Confidence 5999999999999 9999999999999998 999999999985 3 68999999999988888999999988
Q ss_pred CeEEEecCcccccC
Q 005138 190 QKIWDSVPKPQAHM 203 (712)
Q Consensus 190 G~I~~~g~~~e~~~ 203 (712)
|++...|++.+.+.
T Consensus 231 G~i~~~g~~~~~~~ 244 (260)
T PRK10744 231 GELIEFGNTDTIFT 244 (260)
T ss_pred CEEEEeCCHHHHHh
Confidence 99999988766543
No 151
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=7.9e-24 Score=218.50 Aligned_cols=176 Identities=16% Similarity=0.154 Sum_probs=131.8
Q ss_pred EEEEeeeeeeccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC----------
Q 005138 10 TQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK---------- 79 (712)
Q Consensus 10 I~l~~l~k~y~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~---------- 79 (712)
|.+.++++.|+..+++++++++..|+ +++|+||||||||||+++|+|+. +|++|++...+
T Consensus 1 l~~~~l~~~~~~~~l~~is~~i~~Ge------~~~i~G~nG~GKStLl~~l~G~~----~p~~G~v~i~g~~~~~~~~~~ 70 (235)
T cd03299 1 LKVENLSKDWKEFKLKNVSLEVERGD------YFVILGPTGSGKSVLLETIAGFI----KPDSGKILLNGKDITNLPPEK 70 (235)
T ss_pred CeeEeEEEEeCCceeeeeEEEEcCCc------EEEEECCCCCCHHHHHHHHhCCc----CCCceEEEECCEEcCcCChhH
Confidence 46889999996557999999999999 99999999999999999999999 89999853321
Q ss_pred -Ceee-ccccCCCccchhcc-------------------------ccCCCc--ccccchhhHHHHHHHHHHHHHH---HH
Q 005138 80 -GIWM-ARCAGIEPCTLIMD-------------------------LEGTDG--RERGEDDTAFEKQSALFALAVS---DI 127 (712)
Q Consensus 80 -gi~~-~~~~~~~~~~~v~d-------------------------~~g~~~--~~r~~~~~~ferQrv~~A~Ala---~i 127 (712)
++.+ .......+...+.+ ..|+.. .......+..|+||++||+|++ ++
T Consensus 71 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 150 (235)
T cd03299 71 RDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKI 150 (235)
T ss_pred cCEEEEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 1110 00000111001100 001110 0011122344999999999999 99
Q ss_pred hhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCccccc
Q 005138 128 VLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (712)
Q Consensus 128 LlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~ 202 (712)
+++||||++||+.. .+.+.+.++++..+.|+|+|++||++..+...|++++++.+ |+++..|++.+..
T Consensus 151 lllDEPt~gLD~~~------~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~-G~i~~~~~~~~~~ 218 (235)
T cd03299 151 LLLDEPFSALDVRT------KEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLN-GKLIQVGKPEEVF 218 (235)
T ss_pred EEECCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEEC-CEEEEecCHHHHH
Confidence 99999999999998 99999999998765589999999999998888999999988 9999888765543
No 152
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=6.5e-24 Score=224.31 Aligned_cols=177 Identities=15% Similarity=0.202 Sum_probs=134.2
Q ss_pred cEEEEeeeeeec--cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee----
Q 005138 9 STQLIDGDGTFN--VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW---- 82 (712)
Q Consensus 9 ~I~l~~l~k~y~--~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~---- 82 (712)
||++.|+++.|+ ..+++++++++..|+ +++|+||||||||||+++|+|+. +|++|++...+...
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge------~~~l~G~nGsGKSTLl~~i~Gl~----~~~~G~i~~~g~~~~~~~ 70 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGE------MVALLGPNGAGKSTLFLHFNGIL----KPTSGEVLIKGEPIKYDK 70 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEECcccc
Confidence 488999999995 247999999999999 99999999999999999999999 89999853322100
Q ss_pred -----eccccCC--Cc------cchhccc-------------------------cCCCc--ccccchhhHHHHHHHHHHH
Q 005138 83 -----MARCAGI--EP------CTLIMDL-------------------------EGTDG--RERGEDDTAFEKQSALFAL 122 (712)
Q Consensus 83 -----~~~~~~~--~~------~~~v~d~-------------------------~g~~~--~~r~~~~~~ferQrv~~A~ 122 (712)
....+++ .+ ...+.+. .|+.. .......+.+|+||++||+
T Consensus 71 ~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~lar 150 (275)
T PRK13639 71 KSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAG 150 (275)
T ss_pred chHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHH
Confidence 0011111 00 0011110 01110 0011222344999999999
Q ss_pred HHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcc
Q 005138 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (712)
Q Consensus 123 Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~ 199 (712)
|++ +++|+||||++||+.. ...+++++.++.++ |.|||+||||++.+...|++++++.+ |+++..|++.
T Consensus 151 al~~~p~llllDEPt~gLD~~~------~~~l~~~l~~l~~~-~~til~vtH~~~~~~~~~d~i~~l~~-G~i~~~g~~~ 222 (275)
T PRK13639 151 ILAMKPEIIVLDEPTSGLDPMG------ASQIMKLLYDLNKE-GITIIISTHDVDLVPVYADKVYVMSD-GKIIKEGTPK 222 (275)
T ss_pred HHhcCCCEEEEeCCCcCCCHHH------HHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 999 9999999999999998 99999999998764 89999999999999888999999988 9999999877
Q ss_pred cccC
Q 005138 200 QAHM 203 (712)
Q Consensus 200 e~~~ 203 (712)
+.+.
T Consensus 223 ~~~~ 226 (275)
T PRK13639 223 EVFS 226 (275)
T ss_pred HHhc
Confidence 6654
No 153
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.90 E-value=8.2e-24 Score=241.94 Aligned_cols=177 Identities=15% Similarity=0.136 Sum_probs=135.1
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee---
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW--- 82 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~--- 82 (712)
++|++.|+++.|+ ..++++++|++..|+ +++|+||||||||||||+|+|+. +|++|++...+. +.
T Consensus 4 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge------~~~liG~nGsGKSTLl~~i~Gl~----~p~~G~i~~~g~~i~~~~ 73 (510)
T PRK09700 4 PYISMAGIGKSFGPVHALKSVNLTVYPGE------IHALLGENGAGKSTLMKVLSGIH----EPTKGTITINNINYNKLD 73 (510)
T ss_pred ceEEEeeeEEEcCCeEEeeeeeEEEcCCc------EEEEECCCCCCHHHHHHHHcCCc----CCCccEEEECCEECCCCC
Confidence 4699999999995 457999999999999 99999999999999999999999 899998533210 00
Q ss_pred ----eccccCC-------Cccchhcccc--------------------------------CCCc--ccccchhhHHHHHH
Q 005138 83 ----MARCAGI-------EPCTLIMDLE--------------------------------GTDG--RERGEDDTAFEKQS 117 (712)
Q Consensus 83 ----~~~~~~~-------~~~~~v~d~~--------------------------------g~~~--~~r~~~~~~ferQr 117 (712)
....+++ .+...+.+.. |+.. .......+..||||
T Consensus 74 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr 153 (510)
T PRK09700 74 HKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQM 153 (510)
T ss_pred HHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHH
Confidence 0001111 1111111111 1100 00011233449999
Q ss_pred HHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEE
Q 005138 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (712)
Q Consensus 118 v~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~ 194 (712)
++||+|++ ++|||||||++||+.. ...+++++.++.++ |+|||+||||++.+...|++++++.+ |+++.
T Consensus 154 v~ia~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~l~~~-g~tiiivsHd~~~~~~~~d~v~~l~~-G~i~~ 225 (510)
T PRK09700 154 LEIAKTLMLDAKVIIMDEPTSSLTNKE------VDYLFLIMNQLRKE-GTAIVYISHKLAEIRRICDRYTVMKD-GSSVC 225 (510)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEEC-CEEee
Confidence 99999999 9999999999999999 99999999999765 99999999999999888999999988 99999
Q ss_pred ecCccccc
Q 005138 195 SVPKPQAH 202 (712)
Q Consensus 195 ~g~~~e~~ 202 (712)
.|++.+..
T Consensus 226 ~g~~~~~~ 233 (510)
T PRK09700 226 SGMVSDVS 233 (510)
T ss_pred ecchhhCC
Confidence 88876654
No 154
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.90 E-value=6.8e-24 Score=219.20 Aligned_cols=158 Identities=12% Similarity=0.101 Sum_probs=117.2
Q ss_pred ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC------------eee--cccc
Q 005138 22 SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------------IWM--ARCA 87 (712)
Q Consensus 22 ~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g------------i~~--~~~~ 87 (712)
.++++++++++.|+ +++|+|||||||||||++|+|+. +|++|++...+. +.+ ....
T Consensus 35 ~il~~vs~~i~~Ge------~~~i~G~NGsGKSTLl~~i~Gl~----~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~ 104 (236)
T cd03267 35 EALKGISFTIEKGE------IVGFIGPNGAGKTTTLKILSGLL----QPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKT 104 (236)
T ss_pred eeeeceeEEEcCCC------EEEEECCCCCCHHHHHHHHhCCc----CCCceEEEECCEEccccchhhcccEEEEcCCcc
Confidence 36899999999999 99999999999999999999998 899998543211 111 0100
Q ss_pred CCCccchhcc-------ccCCCcc--------------------cccchhhHHHHHHHHHHHHHH---HHhhhccccCCC
Q 005138 88 GIEPCTLIMD-------LEGTDGR--------------------ERGEDDTAFEKQSALFALAVS---DIVLINMWCHDI 137 (712)
Q Consensus 88 ~~~~~~~v~d-------~~g~~~~--------------------~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~L 137 (712)
...+...+.+ ..+.... ......+..|+||+.||+|++ ++||+||||++|
T Consensus 105 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 184 (236)
T cd03267 105 QLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGL 184 (236)
T ss_pred ccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 1111111111 1111110 001122344999999999999 999999999999
Q ss_pred chhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEec
Q 005138 138 GREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 138 D~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g 196 (712)
|+.. .+.+.+.+.++.++.+.|||+|||+++.+...|++++++.+ |+++..|
T Consensus 185 D~~~------~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~-G~i~~~g 236 (236)
T cd03267 185 DVVA------QENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDK-GRLLYDG 236 (236)
T ss_pred CHHH------HHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeC-CEEEecC
Confidence 9999 99999999998765589999999999998888999999988 9987653
No 155
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.90 E-value=7.2e-24 Score=220.86 Aligned_cols=178 Identities=15% Similarity=0.118 Sum_probs=133.7
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC------
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------ 80 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g------ 80 (712)
++|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+.
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge------~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~ 71 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGKGCRDVSFDLYPGE------VLGIVGESGSGKSTLLGCLAGRL----APDHGTATYIMRSGAELE 71 (253)
T ss_pred ceEEEeeeEEEeCCceEeecceEEEeCCc------EEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEEecccccccc
Confidence 3699999999995 457999999999999 99999999999999999999999 899998543210
Q ss_pred ee-e---------ccccCC---Cc------cchhcc--------------------------ccCCCc---ccccchhhH
Q 005138 81 IW-M---------ARCAGI---EP------CTLIMD--------------------------LEGTDG---RERGEDDTA 112 (712)
Q Consensus 81 i~-~---------~~~~~~---~~------~~~v~d--------------------------~~g~~~---~~r~~~~~~ 112 (712)
+. . ...+++ .+ ...+.+ ..|+.. .......+.
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSg 151 (253)
T TIGR02323 72 LYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSG 151 (253)
T ss_pred cccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCH
Confidence 00 0 001111 00 000000 001100 001112334
Q ss_pred HHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecC
Q 005138 113 FEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDI 189 (712)
Q Consensus 113 ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~ 189 (712)
.|+||+++|+|++ ++||+||||++||+.. .+.+.+.+.++.++.|.|+|+|||+++.+...|++++++.+
T Consensus 152 G~~qrv~laral~~~p~vlllDEP~~~LD~~~------~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~- 224 (253)
T TIGR02323 152 GMQQRLQIARNLVTRPRLVFMDEPTGGLDVSV------QARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQ- 224 (253)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEEC-
Confidence 5999999999999 9999999999999998 99999999998765589999999999998888999999988
Q ss_pred CeEEEecCccccc
Q 005138 190 QKIWDSVPKPQAH 202 (712)
Q Consensus 190 G~I~~~g~~~e~~ 202 (712)
|+++..+++.+..
T Consensus 225 G~i~~~~~~~~~~ 237 (253)
T TIGR02323 225 GRVVESGLTDQVL 237 (253)
T ss_pred CEEEEECCHHHHh
Confidence 9999988765544
No 156
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.1e-23 Score=219.62 Aligned_cols=178 Identities=15% Similarity=0.207 Sum_probs=132.3
Q ss_pred cccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCC-----CCCeeeccCC
Q 005138 7 CCSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA-----FKGRSQTTKG 80 (712)
Q Consensus 7 ~~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p-----~sG~~~~t~g 80 (712)
..+|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +| ++|++...+.
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~----~~~~~~~~~G~i~~~g~ 74 (254)
T PRK14273 5 EAIIETENLNLFYTDFKALNNINIKILKNS------ITALIGPSGCGKSTFLRTLNRMN----DLVEGIKIEGNVIYEGK 74 (254)
T ss_pred CceEEEeeeEEEeCCceeecceeeEEcCCC------EEEEECCCCCCHHHHHHHHhccc----cCCcCCCCceEEEECCE
Confidence 34799999999995 457999999999999 99999999999999999999998 65 4787432111
Q ss_pred -ee--------eccccCC---Cc---cchhcc-------ccCCCc-------------------------ccccchhhHH
Q 005138 81 -IW--------MARCAGI---EP---CTLIMD-------LEGTDG-------------------------RERGEDDTAF 113 (712)
Q Consensus 81 -i~--------~~~~~~~---~~---~~~v~d-------~~g~~~-------------------------~~r~~~~~~f 113 (712)
+. +...+++ .+ ...+.+ ..+... .......+..
T Consensus 75 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG 154 (254)
T PRK14273 75 NIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGG 154 (254)
T ss_pred ecccccccHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHH
Confidence 00 0011111 00 011111 001100 0011123344
Q ss_pred HHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCC
Q 005138 114 EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ 190 (712)
Q Consensus 114 erQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G 190 (712)
|+||++||+|++ ++||+||||++||+.. ...+++++.++. + +.|+|++|||++.+...|++++++.+ |
T Consensus 155 ~~qrv~laral~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~-~-~~tvii~sH~~~~~~~~~d~i~~l~~-G 225 (254)
T PRK14273 155 QQQRLCIARTLAIEPNVILMDEPTSALDPIS------TGKIEELIINLK-E-SYTIIIVTHNMQQAGRISDRTAFFLN-G 225 (254)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcccCHHH------HHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEEEC-C
Confidence 999999999999 9999999999999998 999999999984 3 78999999999998888999999988 9
Q ss_pred eEEEecCcccccC
Q 005138 191 KIWDSVPKPQAHM 203 (712)
Q Consensus 191 ~I~~~g~~~e~~~ 203 (712)
+++..|++.+++.
T Consensus 226 ~i~~~g~~~~~~~ 238 (254)
T PRK14273 226 CIEEESSTDELFF 238 (254)
T ss_pred EEEEeCCHHHHHh
Confidence 9999988766543
No 157
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.1e-23 Score=222.21 Aligned_cols=179 Identities=16% Similarity=0.162 Sum_probs=132.8
Q ss_pred ccEEEEeeeeeec---cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-e--
Q 005138 8 CSTQLIDGDGTFN---VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-I-- 81 (712)
Q Consensus 8 ~~I~l~~l~k~y~---~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i-- 81 (712)
.+|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+. +
T Consensus 6 ~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge------~~~l~G~nGsGKSTLl~~l~Gl~----~p~~G~I~~~g~~i~~ 75 (271)
T PRK13632 6 VMIKVENVSFSYPNSENNALKNVSFEINEGE------YVAILGHNGSGKSTISKILTGLL----KPQSGEIKIDGITISK 75 (271)
T ss_pred eEEEEEeEEEEcCCCCccceeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHhcCC----CCCCceEEECCEecCc
Confidence 4799999999994 347999999999999 99999999999999999999999 899998432210 0
Q ss_pred ----eeccccCC---C-----ccchhcccc-------CCCcc--------------------cccchhhHHHHHHHHHHH
Q 005138 82 ----WMARCAGI---E-----PCTLIMDLE-------GTDGR--------------------ERGEDDTAFEKQSALFAL 122 (712)
Q Consensus 82 ----~~~~~~~~---~-----~~~~v~d~~-------g~~~~--------------------~r~~~~~~ferQrv~~A~ 122 (712)
.+...+++ . ....+.+.. +.... ......+..|+||++||+
T Consensus 76 ~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lar 155 (271)
T PRK13632 76 ENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIAS 155 (271)
T ss_pred CCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHH
Confidence 00111111 0 001111110 11100 011122344999999999
Q ss_pred HHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcc
Q 005138 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (712)
Q Consensus 123 Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~ 199 (712)
|++ ++|||||||++||+.. ...+++++.++.++.+.|+|++||+++.+. .|++++++.+ |++...|++.
T Consensus 156 al~~~p~lllLDEP~~gLD~~~------~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~-G~i~~~g~~~ 227 (271)
T PRK13632 156 VLALNPEIIIFDESTSMLDPKG------KREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSE-GKLIAQGKPK 227 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEEC-CEEEEecCHH
Confidence 999 9999999999999998 999999999987654589999999998876 6999999888 9999888766
Q ss_pred cccCC
Q 005138 200 QAHME 204 (712)
Q Consensus 200 e~~~~ 204 (712)
+....
T Consensus 228 ~~~~~ 232 (271)
T PRK13632 228 EILNN 232 (271)
T ss_pred HHhcC
Confidence 65443
No 158
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=7e-24 Score=206.85 Aligned_cols=176 Identities=17% Similarity=0.266 Sum_probs=140.2
Q ss_pred cccEEEEeeeeeec-c--ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC----
Q 005138 7 CCSTQLIDGDGTFN-V--SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK---- 79 (712)
Q Consensus 7 ~~~I~l~~l~k~y~-~--~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~---- 79 (712)
|+++.+.+++.+|. . .++++++++|..|+ .|.++||+|||||||||+++|+. +|+.|+++..+
T Consensus 1 M~~l~~~~~sl~y~g~~~~~le~vsL~ia~ge------~vv~lGpSGcGKTTLLnl~AGf~----~P~~G~i~l~~r~i~ 70 (259)
T COG4525 1 MCMLNVSHLSLSYEGKPRSALEDVSLTIASGE------LVVVLGPSGCGKTTLLNLIAGFV----TPSRGSIQLNGRRIE 70 (259)
T ss_pred CceeehhheEEecCCcchhhhhccceeecCCC------EEEEEcCCCccHHHHHHHHhcCc----CcccceEEECCEecc
Confidence 35788999999994 2 36999999999999 99999999999999999999999 99999965432
Q ss_pred ------Ceeecccc------CCCccchhccccCCCcccccchh--------------------hHHHHHHHHHHHHHH--
Q 005138 80 ------GIWMARCA------GIEPCTLIMDLEGTDGRERGEDD--------------------TAFEKQSALFALAVS-- 125 (712)
Q Consensus 80 ------gi~~~~~~------~~~~~~~v~d~~g~~~~~r~~~~--------------------~~ferQrv~~A~Ala-- 125 (712)
|+.+...- ..+|..+-+...|.+..+|.+.. +..||||+.+|+|++
T Consensus 71 gPgaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~e 150 (259)
T COG4525 71 GPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVE 150 (259)
T ss_pred CCCccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcC
Confidence 23332210 01333444455566655543221 233999999999999
Q ss_pred -HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceec-CCeEEEecCc
Q 005138 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED-IQKIWDSVPK 198 (712)
Q Consensus 126 -~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~-~G~I~~~g~~ 198 (712)
+.|+||||+..||.-. ++++-+++.++.+..|+.+++||||++++..++++.+++.- -|+|+..-++
T Consensus 151 P~~LlLDEPfgAlDa~t------Re~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 151 PQLLLLDEPFGALDALT------REQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred cceEeecCchhhHHHHH------HHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCC
Confidence 9999999999999988 99999999999988999999999999999999999888864 3788887664
No 159
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.90 E-value=1.1e-23 Score=222.94 Aligned_cols=178 Identities=14% Similarity=0.159 Sum_probs=133.0
Q ss_pred ccEEEEeeeeeecc----ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee
Q 005138 8 CSTQLIDGDGTFNV----SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW 82 (712)
Q Consensus 8 ~~I~l~~l~k~y~~----~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~ 82 (712)
.+|++.|+++.|+. .+++++++++..|+ +++|+|+||||||||+++|+|+. +|++|++...+. +.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge------~~~I~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~i~ 72 (277)
T PRK13642 3 KILEVENLVFKYEKESDVNQLNGVSFSITKGE------WVSIIGQNGSGKSTTARLIDGLF----EEFEGKVKIDGELLT 72 (277)
T ss_pred ceEEEEEEEEEcCCCCcCeeeeeeEEEEcCCC------EEEEECCCCCcHHHHHHHHhcCC----CCCCCEEEECCEECC
Confidence 36999999999952 27999999999999 99999999999999999999999 899998532210 00
Q ss_pred ------eccccCC---C-----ccchhcccc-------CCCccc--------------------ccchhhHHHHHHHHHH
Q 005138 83 ------MARCAGI---E-----PCTLIMDLE-------GTDGRE--------------------RGEDDTAFEKQSALFA 121 (712)
Q Consensus 83 ------~~~~~~~---~-----~~~~v~d~~-------g~~~~~--------------------r~~~~~~ferQrv~~A 121 (712)
+...+++ . ....+.+.. +..... .....+..|+||++||
T Consensus 73 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 73 AENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVA 152 (277)
T ss_pred cCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHH
Confidence 0001110 0 000111100 111000 0011234499999999
Q ss_pred HHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCc
Q 005138 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (712)
Q Consensus 122 ~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~ 198 (712)
+|++ ++||+||||++||+.. ...+.+.+.++.++.|+|+|++|||++.+. .|++++++.+ |+++..|++
T Consensus 153 raL~~~p~llllDEPt~~LD~~~------~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~-G~i~~~g~~ 224 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTG------RQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKA-GEIIKEAAP 224 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEEC-CEEEEeCCH
Confidence 9999 9999999999999998 999999999987655899999999999886 4999999988 999999987
Q ss_pred ccccC
Q 005138 199 PQAHM 203 (712)
Q Consensus 199 ~e~~~ 203 (712)
++.+.
T Consensus 225 ~~~~~ 229 (277)
T PRK13642 225 SELFA 229 (277)
T ss_pred HHHhc
Confidence 66554
No 160
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.90 E-value=9.6e-24 Score=219.28 Aligned_cols=174 Identities=18% Similarity=0.239 Sum_probs=131.9
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCC-----CCeeeccCC-e
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAF-----KGRSQTTKG-I 81 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~-----sG~~~~t~g-i 81 (712)
+|++.|+++.|+ ..+++++++++..|+ +++|+|+|||||||||++|+|+. +|+ +|++...+- +
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge------~~~i~G~nGsGKSTLl~~l~G~~----~p~~~~~~~G~i~~~g~~~ 70 (247)
T TIGR00972 1 AIEIENLNLFYGEKEALKNINLDIPKNQ------VTALIGPSGCGKSTLLRSLNRMN----DLVPGVRIEGKVLFDGQDI 70 (247)
T ss_pred CEEEEEEEEEECCeeeecceeEEECCCC------EEEEECCCCCCHHHHHHHHhccC----CCCcCCCCceEEEECCEEc
Confidence 488999999995 357999999999999 99999999999999999999999 787 887532110 0
Q ss_pred e--------eccccCC-------Cccchhcc-------c-------------------cCCC----c--ccccchhhHHH
Q 005138 82 W--------MARCAGI-------EPCTLIMD-------L-------------------EGTD----G--RERGEDDTAFE 114 (712)
Q Consensus 82 ~--------~~~~~~~-------~~~~~v~d-------~-------------------~g~~----~--~~r~~~~~~fe 114 (712)
. ....+++ .+ ..+.+ . .|+. . .......+..|
T Consensus 71 ~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~ 149 (247)
T TIGR00972 71 YDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQ 149 (247)
T ss_pred cccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHH
Confidence 0 0011111 11 11111 0 1111 0 01112234559
Q ss_pred HHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCe
Q 005138 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (712)
Q Consensus 115 rQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~ 191 (712)
+||+++|+|++ +++|+||||++||+.. ...+++++.++.+ +.|+|+||||++.+...|++++++.+ |+
T Consensus 150 ~qrv~laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~-G~ 220 (247)
T TIGR00972 150 QQRLCIARALAVEPEVLLLDEPTSALDPIA------TGKIEELIQELKK--KYTIVIVTHNMQQAARISDRTAFFYD-GE 220 (247)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHh--cCeEEEEecCHHHHHHhCCEEEEEEC-CE
Confidence 99999999999 9999999999999998 9999999999865 48999999999999888999999988 99
Q ss_pred EEEecCccccc
Q 005138 192 IWDSVPKPQAH 202 (712)
Q Consensus 192 I~~~g~~~e~~ 202 (712)
+...|++++.+
T Consensus 221 i~~~~~~~~~~ 231 (247)
T TIGR00972 221 LVEYGPTEQIF 231 (247)
T ss_pred EEEeCCHHHHH
Confidence 99988876654
No 161
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.1e-23 Score=219.46 Aligned_cols=177 Identities=16% Similarity=0.161 Sum_probs=131.9
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCC-----CCCeeeccCC-
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA-----FKGRSQTTKG- 80 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p-----~sG~~~~t~g- 80 (712)
.+|++.|+++.|+ ..+++++++++..|+ +++|+||||||||||+++|+|+. +| ++|++...+-
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge------~~~l~G~nGsGKSTLl~~l~G~~----~~~~~~~~~G~i~~~g~~ 72 (253)
T PRK14267 3 FAIETVNLRVYYGSNHVIKGVDLKIPQNG------VFALMGPSGCGKSTLLRTFNRLL----ELNEEARVEGEVRLFGRN 72 (253)
T ss_pred ceEEEEeEEEEeCCeeeeecceEEEcCCC------EEEEECCCCCCHHHHHHHHhccC----CcccCCCCceEEEECCEE
Confidence 4799999999995 457999999999999 99999999999999999999998 66 4887432110
Q ss_pred e--------eeccccCC-------Cccchhcc---------------------------ccCCCc------ccccchhhH
Q 005138 81 I--------WMARCAGI-------EPCTLIMD---------------------------LEGTDG------RERGEDDTA 112 (712)
Q Consensus 81 i--------~~~~~~~~-------~~~~~v~d---------------------------~~g~~~------~~r~~~~~~ 112 (712)
+ .....+++ .+...+.+ ..|+.. .......+.
T Consensus 73 i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~ 152 (253)
T PRK14267 73 IYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSG 152 (253)
T ss_pred ccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCH
Confidence 0 00011110 11111100 011100 001112334
Q ss_pred HHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecC
Q 005138 113 FEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDI 189 (712)
Q Consensus 113 ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~ 189 (712)
.|+||++||+|++ ++||+||||++||+.. ...+.+.+.++.+ +.|+|++|||++.+...|++++++.+
T Consensus 153 G~~qrv~laral~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~- 223 (253)
T PRK14267 153 GQRQRLVIARALAMKPKILLMDEPTANIDPVG------TAKIEELLFELKK--EYTIVLVTHSPAQAARVSDYVAFLYL- 223 (253)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHhh--CCEEEEEECCHHHHHhhCCEEEEEEC-
Confidence 5999999999999 9999999999999998 9999999999853 68999999999998888999999988
Q ss_pred CeEEEecCcccccC
Q 005138 190 QKIWDSVPKPQAHM 203 (712)
Q Consensus 190 G~I~~~g~~~e~~~ 203 (712)
|++...|++.+.+.
T Consensus 224 G~i~~~~~~~~~~~ 237 (253)
T PRK14267 224 GKLIEVGPTRKVFE 237 (253)
T ss_pred CEEEEeCCHHHHHh
Confidence 99999988766543
No 162
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.90 E-value=1.8e-23 Score=220.55 Aligned_cols=177 Identities=14% Similarity=0.156 Sum_probs=131.1
Q ss_pred cEEEEeeeeeec--cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC------
Q 005138 9 STQLIDGDGTFN--VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------ 80 (712)
Q Consensus 9 ~I~l~~l~k~y~--~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g------ 80 (712)
+|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+.
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge------~~~l~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~i~~~~ 75 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGS------IAALVGVNGSGKSTLFKALMGFV----RLASGKISILGQPTRQAL 75 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEEhHHhh
Confidence 599999999994 357999999999999 99999999999999999999998 899998543221
Q ss_pred ----ee-eccccCC--Cccchhcccc--------CC---Ccc--------------------cccchhhHHHHHHHHHHH
Q 005138 81 ----IW-MARCAGI--EPCTLIMDLE--------GT---DGR--------------------ERGEDDTAFEKQSALFAL 122 (712)
Q Consensus 81 ----i~-~~~~~~~--~~~~~v~d~~--------g~---~~~--------------------~r~~~~~~ferQrv~~A~ 122 (712)
+. +...... .....+.+.. +. ... ......+..|+||++||+
T Consensus 76 ~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~lar 155 (272)
T PRK15056 76 QKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLAR 155 (272)
T ss_pred ccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHH
Confidence 10 1100000 0000111110 00 000 000112334999999999
Q ss_pred HHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcc
Q 005138 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (712)
Q Consensus 123 Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~ 199 (712)
|++ ++||+||||++||+.. .+.+.+++.++.++ |+|||+||||++.+...|++++++ + |++...|++.
T Consensus 156 aL~~~p~llllDEPt~~LD~~~------~~~l~~~L~~~~~~-g~tviivsH~~~~~~~~~d~v~~~-~-G~i~~~g~~~ 226 (272)
T PRK15056 156 AIAQQGQVILLDEPFTGVDVKT------EARIISLLRELRDE-GKTMLVSTHNLGSVTEFCDYTVMV-K-GTVLASGPTE 226 (272)
T ss_pred HHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEE-C-CEEEeecCHH
Confidence 999 9999999999999998 99999999998754 899999999999888888887555 6 9999998876
Q ss_pred cccCC
Q 005138 200 QAHME 204 (712)
Q Consensus 200 e~~~~ 204 (712)
+.+..
T Consensus 227 ~~~~~ 231 (272)
T PRK15056 227 TTFTA 231 (272)
T ss_pred hccCH
Confidence 65543
No 163
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.90 E-value=1.2e-23 Score=221.93 Aligned_cols=187 Identities=11% Similarity=0.068 Sum_probs=135.8
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCC--------CCeeeccC
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAF--------KGRSQTTK 79 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~--------sG~~~~t~ 79 (712)
||++.|+++.|+ ..++++++++++.|+ +++|+|||||||||||++|+|+. +|+ +|++...+
T Consensus 1 ml~~~nl~~~~~~~~il~~vsl~i~~Ge------~~~l~G~nGsGKSTLl~~laG~~----~p~~~~~~~~~~G~i~~~g 70 (272)
T PRK13547 1 MLTADHLHVARRHRAILRDLSLRIEPGR------VTALLGRNGAGKSTLLKALAGDL----TGGGAPRGARVTGDVTLNG 70 (272)
T ss_pred CeEEEEEEEEECCEeEEecceEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCcccccccCCceEEEECC
Confidence 489999999995 457999999999999 99999999999999999999998 787 77743322
Q ss_pred C-e-------------eeccccCCCccchhccccCCC--c---------cc--------------------ccchhhHHH
Q 005138 80 G-I-------------WMARCAGIEPCTLIMDLEGTD--G---------RE--------------------RGEDDTAFE 114 (712)
Q Consensus 80 g-i-------------~~~~~~~~~~~~~v~d~~g~~--~---------~~--------------------r~~~~~~fe 114 (712)
. + ++...........+.+..... . .. .....+..|
T Consensus 71 ~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~ 150 (272)
T PRK13547 71 EPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGE 150 (272)
T ss_pred EEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHH
Confidence 1 0 000000000011121211000 0 00 001122339
Q ss_pred HHHHHHHHHHH------------HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccccc
Q 005138 115 KQSALFALAVS------------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE 182 (712)
Q Consensus 115 rQrv~~A~Ala------------~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~ 182 (712)
+||++||+|++ ++|||||||++||+.. ...+.+.+.++.++.|+|||+||||++.+...|++
T Consensus 151 ~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~ 224 (272)
T PRK13547 151 LARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAH------QHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADR 224 (272)
T ss_pred HHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHH------HHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCE
Confidence 99999999995 7999999999999998 99999999998765589999999999998888999
Q ss_pred ccceecCCeEEEecCcccccCCccchhhhc
Q 005138 183 PVLREDIQKIWDSVPKPQAHMETPLSEFFN 212 (712)
Q Consensus 183 ~~ll~~~G~I~~~g~~~e~~~~~~l~d~f~ 212 (712)
++++.+ |+++..|+++++.....+..+|+
T Consensus 225 i~~l~~-G~i~~~g~~~~~~~~~~~~~~~~ 253 (272)
T PRK13547 225 IAMLAD-GAIVAHGAPADVLTPAHIARCYG 253 (272)
T ss_pred EEEEEC-CeEEEecCHHHHcCHHHHHHHhC
Confidence 999988 99999988766554333444443
No 164
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.90 E-value=1.1e-23 Score=217.56 Aligned_cols=176 Identities=18% Similarity=0.172 Sum_probs=131.0
Q ss_pred EEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC---------
Q 005138 10 TQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (712)
Q Consensus 10 I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~--------- 79 (712)
|++.|+++.|. ..+++++++++..|+ +++|+||||||||||+++|+|+. +|++|++...+
T Consensus 1 i~i~~l~~~~~~~~il~~is~~i~~Ge------~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~i~i~g~~~~~~~~~ 70 (237)
T TIGR00968 1 IEIANISKRFGSFQALDDVNLEVPTGS------LVALLGPSGSGKSTLLRIIAGLE----QPDSGRIRLNGQDATRVHAR 70 (237)
T ss_pred CEEEEEEEEECCeeeeeeEEEEEcCCC------EEEEECCCCCCHHHHHHHHhcCC----CCCceEEEECCEEcCcCChh
Confidence 46899999995 457999999999999 99999999999999999999998 89999843211
Q ss_pred --Ceee-ccccCCCccchhcccc-------CCCcc--------------------cccchhhHHHHHHHHHHHHHH---H
Q 005138 80 --GIWM-ARCAGIEPCTLIMDLE-------GTDGR--------------------ERGEDDTAFEKQSALFALAVS---D 126 (712)
Q Consensus 80 --gi~~-~~~~~~~~~~~v~d~~-------g~~~~--------------------~r~~~~~~ferQrv~~A~Ala---~ 126 (712)
++.+ .......+...+.+.. +.... ......+..|+||+++|++++ +
T Consensus 71 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~ 150 (237)
T TIGR00968 71 DRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQ 150 (237)
T ss_pred hcCEEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 1111 0000011110001100 11000 000112334999999999999 9
Q ss_pred HhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCccccc
Q 005138 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (712)
Q Consensus 127 iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~ 202 (712)
++|+|||+++||+.. ...+.+.+.++.++.|+|+|++||+++.+...|++++++.+ |+++..++.++..
T Consensus 151 llllDEP~~~LD~~~------~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~-g~i~~~~~~~~~~ 219 (237)
T TIGR00968 151 VLLLDEPFGALDAKV------RKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSN-GKIEQIGSPDEVY 219 (237)
T ss_pred EEEEcCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEEC-CEEEEecCHHHHH
Confidence 999999999999998 99999999998764589999999999998888999999988 9999888866554
No 165
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.90 E-value=1e-23 Score=213.78 Aligned_cols=167 Identities=12% Similarity=0.124 Sum_probs=123.2
Q ss_pred EEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC--------
Q 005138 10 TQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-------- 80 (712)
Q Consensus 10 I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-------- 80 (712)
|++.++++.|+ ..+++++++++..| +++|+|||||||||||++|+|+. +|++|++...+.
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g-------~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~~~ 69 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-------MYGLLGPNGAGKTTLMRILATLT----PPSSGTIRIDGQDVLKQPQK 69 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCC-------cEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCCccccchHH
Confidence 47899999995 34789999999875 69999999999999999999998 899998543221
Q ss_pred ----e-eeccccCCCccchhcccc-------CCCcc--------------------cccchhhHHHHHHHHHHHHHH---
Q 005138 81 ----I-WMARCAGIEPCTLIMDLE-------GTDGR--------------------ERGEDDTAFEKQSALFALAVS--- 125 (712)
Q Consensus 81 ----i-~~~~~~~~~~~~~v~d~~-------g~~~~--------------------~r~~~~~~ferQrv~~A~Ala--- 125 (712)
+ ++.......+...+.+.. +.... ......+..|+||+++|+|++
T Consensus 70 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 149 (211)
T cd03264 70 LRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDP 149 (211)
T ss_pred HHhheEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 1 011110011111111110 11100 001112334999999999999
Q ss_pred HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEec
Q 005138 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 126 ~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g 196 (712)
+++|+||||++||+.. ...+.+.+.++.+ +.|+|+||||++.+...|++++++.+ |+++..|
T Consensus 150 ~llllDEPt~~LD~~~------~~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~-g~i~~~g 211 (211)
T cd03264 150 SILIVDEPTAGLDPEE------RIRFRNLLSELGE--DRIVILSTHIVEDVESLCNQVAVLNK-GKLVFEG 211 (211)
T ss_pred CEEEEcCCcccCCHHH------HHHHHHHHHHHhC--CCEEEEEcCCHHHHHHhCCEEEEEEC-CEEEecC
Confidence 9999999999999998 9999999999864 58999999999998888999999988 9987653
No 166
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.90 E-value=2e-23 Score=206.36 Aligned_cols=165 Identities=17% Similarity=0.162 Sum_probs=123.6
Q ss_pred EEEEeeeeeecc---ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccc
Q 005138 10 TQLIDGDGTFNV---SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC 86 (712)
Q Consensus 10 I~l~~l~k~y~~---~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~ 86 (712)
|++.|+++.|.. .+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+. .....
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge------~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~g~-~~~~~ 69 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGE------KIALLGRSGSGKSTLLQLLTGDL----KPQQGEITLDGV-PVSDL 69 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCC------EEEEECCCCCCHHHHHHHHhccC----CCCCCEEEECCE-EHHHH
Confidence 468899999953 47999999999999 99999999999999999999998 899998543221 11000
Q ss_pred --cCCCccchhccccCCCc---ccc-cchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHH
Q 005138 87 --AGIEPCTLIMDLEGTDG---RER-GEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMR 157 (712)
Q Consensus 87 --~~~~~~~~v~d~~g~~~---~~r-~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~ 157 (712)
.......++.+...... .+. ....+..|+||+++|+|++ ++||+||||++||+.. .+.+++.+.+
T Consensus 70 ~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~------~~~l~~~l~~ 143 (178)
T cd03247 70 EKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPIT------ERQLLSLIFE 143 (178)
T ss_pred HHHHHhhEEEEccCCeeecccHHHhhcccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH------HHHHHHHHHH
Confidence 00000011111111110 000 2334667999999999999 9999999999999998 9999999999
Q ss_pred hhCCCCceEEEEecCCCCcccccccccceecCCeEEEe
Q 005138 158 LFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (712)
Q Consensus 158 L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~ 195 (712)
+. + +.|+|++||+++.+. .|++++++.+ |++...
T Consensus 144 ~~-~-~~tii~~sh~~~~~~-~~d~~~~l~~-g~i~~~ 177 (178)
T cd03247 144 VL-K-DKTLIWITHHLTGIE-HMDKILFLEN-GKIIMQ 177 (178)
T ss_pred Hc-C-CCEEEEEecCHHHHH-hCCEEEEEEC-CEEEec
Confidence 84 3 899999999998886 5888888887 998764
No 167
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.90 E-value=1.3e-23 Score=217.23 Aligned_cols=174 Identities=17% Similarity=0.138 Sum_probs=129.0
Q ss_pred EEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC---------
Q 005138 10 TQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (712)
Q Consensus 10 I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~--------- 79 (712)
|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+.. .+|++|++...+
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~~--~~~~~G~i~~~g~~~~~~~~~ 72 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGE------IHAIMGPNGSGKSTLSKTIAGHPS--YEVTSGTILFKGQDLLELEPD 72 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCCC------EEEEECCCCCCHHHHHHHHhCCCC--CCCCcceEEECCEecCCCCHH
Confidence 47899999995 457999999999999 999999999999999999999930 058889843211
Q ss_pred -----Cee-eccccCCCccc-------hh-------------------------ccccCCCcc---cccc-hhhHHHHHH
Q 005138 80 -----GIW-MARCAGIEPCT-------LI-------------------------MDLEGTDGR---ERGE-DDTAFEKQS 117 (712)
Q Consensus 80 -----gi~-~~~~~~~~~~~-------~v-------------------------~d~~g~~~~---~r~~-~~~~ferQr 117 (712)
++. +.......+.. +. ++..|+... .... ..+..|+||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qr 152 (243)
T TIGR01978 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKR 152 (243)
T ss_pred HhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHH
Confidence 111 01110000000 00 001122210 1111 245679999
Q ss_pred HHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccc-cccccceecCCeEE
Q 005138 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE-NLEPVLREDIQKIW 193 (712)
Q Consensus 118 v~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~-~~~~~ll~~~G~I~ 193 (712)
++||+|++ ++|||||||++||+.. ...+.+.+.++.+ .|.|||+||||++.+... |++++++.+ |+++
T Consensus 153 l~la~al~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~-~~~tvi~vsH~~~~~~~~~~d~i~~l~~-G~i~ 224 (243)
T TIGR01978 153 NEILQMALLEPKLAILDEIDSGLDIDA------LKIVAEGINRLRE-PDRSFLIITHYQRLLNYIKPDYVHVLLD-GRIV 224 (243)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHH------HHHHHHHHHHHHH-CCcEEEEEEecHHHHHhhcCCeEEEEeC-CEEE
Confidence 99999999 9999999999999998 9999999999865 489999999999998887 789888888 9999
Q ss_pred EecCcc
Q 005138 194 DSVPKP 199 (712)
Q Consensus 194 ~~g~~~ 199 (712)
..|+++
T Consensus 225 ~~g~~~ 230 (243)
T TIGR01978 225 KSGDVE 230 (243)
T ss_pred EecCHH
Confidence 888764
No 168
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.90 E-value=8.3e-24 Score=216.79 Aligned_cols=175 Identities=14% Similarity=0.128 Sum_probs=129.1
Q ss_pred EEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccC-ccCCCCCeeeccC--------
Q 005138 10 TQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFR-EMDAFKGRSQTTK-------- 79 (712)
Q Consensus 10 I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~-~m~p~sG~~~~t~-------- 79 (712)
|++.|+++.|+ ..++++++++++.|+ +++|+||||||||||+++|+|+.-. .-+|++|++...+
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge------~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~ 74 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGE------ITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcch
Confidence 57899999995 457999999999999 9999999999999999999998600 0026788743211
Q ss_pred -------Ce-eeccccCCCccchh--------------------------ccccCCCcc--cc--cchhhHHHHHHHHHH
Q 005138 80 -------GI-WMARCAGIEPCTLI--------------------------MDLEGTDGR--ER--GEDDTAFEKQSALFA 121 (712)
Q Consensus 80 -------gi-~~~~~~~~~~~~~v--------------------------~d~~g~~~~--~r--~~~~~~ferQrv~~A 121 (712)
++ ++....... ...+ ++..|+... .. ....+..|+||++||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la 153 (227)
T cd03260 75 DVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLA 153 (227)
T ss_pred HHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHH
Confidence 00 011000000 0011 111122211 11 133456699999999
Q ss_pred HHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCc
Q 005138 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (712)
Q Consensus 122 ~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~ 198 (712)
+|++ ++||+||||++||+.. ...+++.+.++.++ .|||++|||++.+...|++++++.+ |+++..|++
T Consensus 154 ~al~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~--~tii~~sH~~~~~~~~~d~i~~l~~-G~i~~~g~~ 224 (227)
T cd03260 154 RALANEPEVLLLDEPTSALDPIS------TAKIEELIAELKKE--YTIVIVTHNMQQAARVADRTAFLLN-GRLVEFGPT 224 (227)
T ss_pred HHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHhhC--cEEEEEeccHHHHHHhCCEEEEEeC-CEEEEecCc
Confidence 9999 9999999999999998 99999999998653 8999999999998888999999988 999988876
Q ss_pred cc
Q 005138 199 PQ 200 (712)
Q Consensus 199 ~e 200 (712)
.+
T Consensus 225 ~~ 226 (227)
T cd03260 225 EQ 226 (227)
T ss_pred cc
Confidence 54
No 169
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.89 E-value=1.4e-23 Score=211.54 Aligned_cols=168 Identities=17% Similarity=0.122 Sum_probs=126.9
Q ss_pred EEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeee-----
Q 005138 10 TQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM----- 83 (712)
Q Consensus 10 I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~----- 83 (712)
+++.|+++.|+ ..+++++++++..|+ +++|+||||||||||+++|+|+.. .+|++|++...+.-..
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge------~~~i~G~nGsGKStLl~~l~G~~~--~~p~~G~i~~~g~~~~~~~~~ 72 (200)
T cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGE------VHALMGPNGSGKSTLAKTIMGHPK--YEVTEGEILFKGEDITDLPPE 72 (200)
T ss_pred CeEEEEEEEeCCEEeeeccceEECCCc------EEEEECCCCCCHHHHHHHHhCCCc--CCCCccEEEECCEECCcCCHH
Confidence 46889999995 357999999999999 999999999999999999999830 0588898543221000
Q ss_pred ---ccccCC-------CccchhccccCCCcccccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHH
Q 005138 84 ---ARCAGI-------EPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKT 150 (712)
Q Consensus 84 ---~~~~~~-------~~~~~v~d~~g~~~~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~ 150 (712)
...+++ .+...+.+.. .......+..|+||+++|+|++ +++|+||||++||+.. ...
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~~~~~l----~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~------~~~ 142 (200)
T cd03217 73 ERARLGIFLAFQYPPEIPGVKNADFL----RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDA------LRL 142 (200)
T ss_pred HHhhCcEEEeecChhhccCccHHHHH----hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH------HHH
Confidence 000111 0001111110 0111245677999999999999 9999999999999998 999
Q ss_pred HHHHHHHhhCCCCceEEEEecCCCCccc-ccccccceecCCeEEEecC
Q 005138 151 VFQVMMRLFSPRKTTLMFVIRDKTRTPL-ENLEPVLREDIQKIWDSVP 197 (712)
Q Consensus 151 v~e~l~~L~~~~g~tiL~VtHDl~~~~~-~~~~~~ll~~~G~I~~~g~ 197 (712)
+.+++.++.++ +.|+|++||+++.+.. .|++++++.+ |++...|+
T Consensus 143 l~~~L~~~~~~-~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~~~ 188 (200)
T cd03217 143 VAEVINKLREE-GKSVLIITHYQRLLDYIKPDRVHVLYD-GRIVKSGD 188 (200)
T ss_pred HHHHHHHHHHC-CCEEEEEecCHHHHHHhhCCEEEEEEC-CEEEEEcc
Confidence 99999998654 8999999999998776 6999999988 99998873
No 170
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1.4e-23 Score=210.27 Aligned_cols=171 Identities=12% Similarity=0.103 Sum_probs=125.1
Q ss_pred cEEEEeeeeeec-----cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee-
Q 005138 9 STQLIDGDGTFN-----VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW- 82 (712)
Q Consensus 9 ~I~l~~l~k~y~-----~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~- 82 (712)
.|++.++++.|. ..+++++++++..|+ +++|+|||||||||||++|+|+.. .+|++|++...+...
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge------~~~l~G~nGsGKSTLl~~l~G~~~--~~~~~G~i~~~g~~~~ 74 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGT------LTALMGESGAGKTTLLDVLAGRKT--AGVITGEILINGRPLD 74 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCc------EEEEECCCCCCHHHHHHHHhCCCc--CCCcceEEEECCEehH
Confidence 589999999994 347999999999999 999999999999999999999751 037888754322100
Q ss_pred --eccccCC-------CccchhccccCCCcccccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHH
Q 005138 83 --MARCAGI-------EPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKT 150 (712)
Q Consensus 83 --~~~~~~~-------~~~~~v~d~~g~~~~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~ 150 (712)
....+++ .+...+.+....... ....+..|+||++||+|++ +++|+|||+++||+.. ...
T Consensus 75 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~--~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~------~~~ 146 (192)
T cd03232 75 KNFQRSTGYVEQQDVHSPNLTVREALRFSAL--LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQA------AYN 146 (192)
T ss_pred HHhhhceEEecccCccccCCcHHHHHHHHHH--HhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHH------HHH
Confidence 0001111 011111111100000 0134667999999999999 9999999999999998 999
Q ss_pred HHHHHHHhhCCCCceEEEEecCCC-CcccccccccceecCCeEEEec
Q 005138 151 VFQVMMRLFSPRKTTLMFVIRDKT-RTPLENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 151 v~e~l~~L~~~~g~tiL~VtHDl~-~~~~~~~~~~ll~~~G~I~~~g 196 (712)
+++.+.++.+. |+|+|+|||+++ .+...|++++++.+.|+++..|
T Consensus 147 l~~~l~~~~~~-~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 147 IVRFLKKLADS-GQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHHHc-CCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999998754 899999999998 4677788888886548887653
No 171
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.89 E-value=9.1e-24 Score=216.63 Aligned_cols=172 Identities=13% Similarity=0.097 Sum_probs=127.9
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC------
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------ 80 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g------ 80 (712)
++|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+.
T Consensus 6 ~~i~~~~l~~~~~~~~il~~vs~~i~~Ge------~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~ 75 (225)
T PRK10247 6 PLLQLQNVGYLAGDAKILNNISFSLRAGE------FKLITGPSGCGKSTLLKIVASLI----SPTSGTLLFEGEDISTLK 75 (225)
T ss_pred ceEEEeccEEeeCCceeeeccEEEEcCCC------EEEEECCCCCCHHHHHHHHhccc----CCCCCeEEECCEEcCcCC
Confidence 4699999999995 457999999999999 99999999999999999999998 899998532211
Q ss_pred -------ee-eccccCCCccchhcc-----------------------ccCCCc---ccccchhhHHHHHHHHHHHHHH-
Q 005138 81 -------IW-MARCAGIEPCTLIMD-----------------------LEGTDG---RERGEDDTAFEKQSALFALAVS- 125 (712)
Q Consensus 81 -------i~-~~~~~~~~~~~~v~d-----------------------~~g~~~---~~r~~~~~~ferQrv~~A~Ala- 125 (712)
+. +.......+. .+.+ ..|+.. .......+..|+||++||+|++
T Consensus 76 ~~~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 76 PEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred HHHHHhccEEEecccccccc-cHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 10 1110000010 1111 111110 0111223345999999999999
Q ss_pred --HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecC
Q 005138 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (712)
Q Consensus 126 --~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~ 197 (712)
+++|+||||++||+.. ...+.+.+.++.++.|.|+|++|||++.+. .|++++++.+.+..+.+|+
T Consensus 155 ~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 155 MPKVLLLDEITSALDESN------KHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEMQEAR 221 (225)
T ss_pred CCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchHhhhh
Confidence 9999999999999998 999999999987655899999999999886 5999998865566666654
No 172
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.89 E-value=1.2e-23 Score=240.03 Aligned_cols=176 Identities=15% Similarity=0.117 Sum_probs=134.6
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC------
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------ 80 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g------ 80 (712)
++|++.|+++.|+ ..++++++|++..|+ +++|+||||||||||||+|+|+. +|++|++...+.
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~is~~i~~Ge------~~~l~G~NGsGKSTLl~~l~G~~----~p~~G~i~~~g~~~~~~~ 72 (501)
T PRK10762 3 ALLQLKGIDKAFPGVKALSGAALNVYPGR------VMALVGENGAGKSTMMKVLTGIY----TRDAGSILYLGKEVTFNG 72 (501)
T ss_pred ceEEEeeeEEEeCCeEEeeeeeEEEcCCe------EEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCCCC
Confidence 4799999999995 357999999999999 99999999999999999999999 899998532210
Q ss_pred --------e-eeccccCCCccchhcccc-----------------------------CCCcc--cccchhhHHHHHHHHH
Q 005138 81 --------I-WMARCAGIEPCTLIMDLE-----------------------------GTDGR--ERGEDDTAFEKQSALF 120 (712)
Q Consensus 81 --------i-~~~~~~~~~~~~~v~d~~-----------------------------g~~~~--~r~~~~~~ferQrv~~ 120 (712)
+ ++.......+...+.+.. |+... ......+..||||++|
T Consensus 73 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l 152 (501)
T PRK10762 73 PKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEI 152 (501)
T ss_pred HHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHH
Confidence 0 011100011111121111 11100 0112234459999999
Q ss_pred HHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecC
Q 005138 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (712)
Q Consensus 121 A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~ 197 (712)
|+|++ ++|||||||++||+.. ...+.+++.++.+. |+|||+||||++.+...|++++++.+ |+++..++
T Consensus 153 a~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~l~~~-~~tvii~sHd~~~~~~~~d~i~~l~~-G~i~~~~~ 224 (501)
T PRK10762 153 AKVLSFESKVIIMDEPTDALTDTE------TESLFRVIRELKSQ-GRGIVYISHRLKEIFEICDDVTVFRD-GQFIAERE 224 (501)
T ss_pred HHHHhcCCCEEEEeCCcCCCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeC-CEEEEecC
Confidence 99999 9999999999999998 99999999998754 89999999999999889999999988 99999887
Q ss_pred cccc
Q 005138 198 KPQA 201 (712)
Q Consensus 198 ~~e~ 201 (712)
+.+.
T Consensus 225 ~~~~ 228 (501)
T PRK10762 225 VADL 228 (501)
T ss_pred cCcC
Confidence 7654
No 173
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.89 E-value=1.1e-23 Score=213.77 Aligned_cols=165 Identities=19% Similarity=0.222 Sum_probs=121.5
Q ss_pred EEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC--------Cee
Q 005138 12 LIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------GIW 82 (712)
Q Consensus 12 l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~--------gi~ 82 (712)
+.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+ ++.
T Consensus 2 ~~~l~~~~~~~~~l~~isl~i~~Ge------~~~l~G~nGsGKSTLl~~l~G~~----~p~~G~i~~~g~~~~~~~~~i~ 71 (213)
T cd03235 2 VEDLTVSYGGHPVLEDVSFEVKPGE------FLAIVGPNGAGKSTLLKAILGLL----KPTSGSIRVFGKPLEKERKRIG 71 (213)
T ss_pred cccceeEECCEEeeecceeEEcCCC------EEEEECCCCCCHHHHHHHHcCCC----CCCCCEEEECCccHHHHHhheE
Confidence 578899995 347999999999999 99999999999999999999998 89999854322 111
Q ss_pred -eccccCCC--ccchhcccc-----------------------------CCCc--ccccchhhHHHHHHHHHHHHHH---
Q 005138 83 -MARCAGIE--PCTLIMDLE-----------------------------GTDG--RERGEDDTAFEKQSALFALAVS--- 125 (712)
Q Consensus 83 -~~~~~~~~--~~~~v~d~~-----------------------------g~~~--~~r~~~~~~ferQrv~~A~Ala--- 125 (712)
+....... ....+.+.. |+.. .......+..|+||+++|+|++
T Consensus 72 ~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p 151 (213)
T cd03235 72 YVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDP 151 (213)
T ss_pred EeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 11111100 001111111 0000 0000112334999999999999
Q ss_pred HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEe
Q 005138 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (712)
Q Consensus 126 ~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~ 195 (712)
++||+||||++||+.. ...+.+.+.++.+ .|+|+|+||||++++...|++++++.+ | ++..
T Consensus 152 ~llllDEPt~~LD~~~------~~~l~~~l~~~~~-~~~tvi~~sH~~~~~~~~~d~i~~l~~-~-~~~~ 212 (213)
T cd03235 152 DLLLLDEPFAGVDPKT------QEDIYELLRELRR-EGMTILVVTHDLGLVLEYFDRVLLLNR-T-VVAS 212 (213)
T ss_pred CEEEEeCCcccCCHHH------HHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEEEcC-c-Eeec
Confidence 9999999999999998 9999999999876 489999999999999888999998876 5 5443
No 174
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=9.7e-24 Score=241.17 Aligned_cols=177 Identities=12% Similarity=0.134 Sum_probs=133.9
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCC--CCCeeeccCC-e--
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA--FKGRSQTTKG-I-- 81 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p--~sG~~~~t~g-i-- 81 (712)
++|++.|+++.|+ ..+++++++++..|+ +++|+||||||||||||+|+|+. +| ++|++...+. +
T Consensus 4 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge------~~~l~G~nGsGKSTLl~~l~Gl~----~~~~~~G~i~~~g~~~~~ 73 (506)
T PRK13549 4 YLLEMKNITKTFGGVKALDNVSLKVRAGE------IVSLCGENGAGKSTLMKVLSGVY----PHGTYEGEIIFEGEELQA 73 (506)
T ss_pred ceEEEeeeEEEeCCeEeecceeEEEeCCe------EEEEECCCCCCHHHHHHHHhCCC----CCCCCCeEEEECCEECCC
Confidence 4799999999995 357999999999999 99999999999999999999998 65 7898532210 0
Q ss_pred -----eeccccC-------CCccchhcccc----------------------------CCCc--ccccchhhHHHHHHHH
Q 005138 82 -----WMARCAG-------IEPCTLIMDLE----------------------------GTDG--RERGEDDTAFEKQSAL 119 (712)
Q Consensus 82 -----~~~~~~~-------~~~~~~v~d~~----------------------------g~~~--~~r~~~~~~ferQrv~ 119 (712)
.....++ ..+...+.+.. |+.. .......+..||||++
T Consensus 74 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~ 153 (506)
T PRK13549 74 SNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVE 153 (506)
T ss_pred CCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHH
Confidence 0001111 11111111111 1100 0011223444999999
Q ss_pred HHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEec
Q 005138 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 120 ~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g 196 (712)
||+|++ ++|||||||++||+.. ...+++++.++.++ |.|||+||||++.+...|++++++.+ |+++..|
T Consensus 154 la~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~l~~~-~~tvi~~tH~~~~~~~~~d~v~~l~~-G~i~~~~ 225 (506)
T PRK13549 154 IAKALNKQARLLILDEPTASLTESE------TAVLLDIIRDLKAH-GIACIYISHKLNEVKAISDTICVIRD-GRHIGTR 225 (506)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCcHHHHHHhcCEEEEEEC-CEEeeec
Confidence 999999 9999999999999998 99999999998654 89999999999999888999999988 9999998
Q ss_pred Cccccc
Q 005138 197 PKPQAH 202 (712)
Q Consensus 197 ~~~e~~ 202 (712)
++.+..
T Consensus 226 ~~~~~~ 231 (506)
T PRK13549 226 PAAGMT 231 (506)
T ss_pred ccccCC
Confidence 876643
No 175
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.89 E-value=6.4e-24 Score=215.09 Aligned_cols=163 Identities=20% Similarity=0.219 Sum_probs=121.1
Q ss_pred EEEeeeeeecc---ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee----
Q 005138 11 QLIDGDGTFNV---SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW---- 82 (712)
Q Consensus 11 ~l~~l~k~y~~---~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~---- 82 (712)
++.|+++.|+. .+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+. +.
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~------~~~l~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~ 70 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGE------FVLIVGPNGSGKSTLLRLLNGLL----GPTSGEVLVDGKDLTKLSL 70 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCc------EEEEECCCCCCHHHHHHHHhcCC----CCCCceEEECCEEcccCCH
Confidence 36789999953 57999999999999 99999999999999999999999 899998533221 00
Q ss_pred --eccccCC--------Cccchhccc-------------------------cCCCc--ccccchhhHHHHHHHHHHHHHH
Q 005138 83 --MARCAGI--------EPCTLIMDL-------------------------EGTDG--RERGEDDTAFEKQSALFALAVS 125 (712)
Q Consensus 83 --~~~~~~~--------~~~~~v~d~-------------------------~g~~~--~~r~~~~~~ferQrv~~A~Ala 125 (712)
+...+++ .....+.+. .|+.. .......+..|+||++||+|++
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~ 150 (211)
T cd03225 71 KELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLA 150 (211)
T ss_pred HHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 0011111 000111111 01110 0011223444999999999999
Q ss_pred ---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCe
Q 005138 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (712)
Q Consensus 126 ---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~ 191 (712)
++||+||||++||+.. ...+.+.+.++.++ |+|+|+||||++.+...|++++++.+ |+
T Consensus 151 ~~p~llllDEPt~~LD~~~------~~~~~~~l~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~~-G~ 211 (211)
T cd03225 151 MDPDILLLDEPTAGLDPAG------RRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLED-GK 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEeC-CC
Confidence 9999999999999998 99999999998765 89999999999998888999998877 64
No 176
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2e-23 Score=218.94 Aligned_cols=180 Identities=17% Similarity=0.137 Sum_probs=132.4
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCC-----CCeeeccC--
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAF-----KGRSQTTK-- 79 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~-----sG~~~~t~-- 79 (712)
.+|++.|+++.|+ ..++++++++++.|+ +++|+|+|||||||||++|+|+. +|+ +|++...+
T Consensus 6 ~~l~~~nl~~~~~~~~il~~is~~i~~Ge------~~~I~G~nGsGKSTLl~~l~Gl~----~~~g~i~~~G~i~~~g~~ 75 (261)
T PRK14258 6 PAIKVNNLSFYYDTQKILEGVSMEIYQSK------VTAIIGPSGCGKSTFLKCLNRMN----ELESEVRVEGRVEFFNQN 75 (261)
T ss_pred ceEEEeeEEEEeCCeeEeeceEEEEcCCc------EEEEECCCCCCHHHHHHHHhccc----CCCCCccccceEEECCEE
Confidence 3699999999995 357999999999999 99999999999999999999998 664 45421110
Q ss_pred -------------Ceee-ccccCCCccchhcccc-------CC-Cc------------------------ccccchhhHH
Q 005138 80 -------------GIWM-ARCAGIEPCTLIMDLE-------GT-DG------------------------RERGEDDTAF 113 (712)
Q Consensus 80 -------------gi~~-~~~~~~~~~~~v~d~~-------g~-~~------------------------~~r~~~~~~f 113 (712)
++.+ .......+ ..+.+.. +. +. .......+..
T Consensus 76 i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 154 (261)
T PRK14258 76 IYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGG 154 (261)
T ss_pred hhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHH
Confidence 0000 00000001 1111100 11 00 0011123445
Q ss_pred HHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecC-
Q 005138 114 EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDI- 189 (712)
Q Consensus 114 erQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~- 189 (712)
|+||+++|++++ ++|||||||++||+.. ...+.+.+.++....|.|+|+||||++.+...|++++++.+.
T Consensus 155 q~qrv~laral~~~p~vllLDEP~~~LD~~~------~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~ 228 (261)
T PRK14258 155 QQQRLCIARALAVKPKVLLMDEPCFGLDPIA------SMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNE 228 (261)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCC
Confidence 999999999999 9999999999999998 999999999986545899999999999999889999888763
Q ss_pred ---CeEEEecCcccccCC
Q 005138 190 ---QKIWDSVPKPQAHME 204 (712)
Q Consensus 190 ---G~I~~~g~~~e~~~~ 204 (712)
|+++..|++++++.+
T Consensus 229 ~~~G~i~~~~~~~~~~~~ 246 (261)
T PRK14258 229 NRIGQLVEFGLTKKIFNS 246 (261)
T ss_pred CcCceEEEeCCHHHHHhC
Confidence 899999988776554
No 177
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.89 E-value=1.5e-23 Score=222.36 Aligned_cols=178 Identities=11% Similarity=0.083 Sum_probs=132.3
Q ss_pred cEEEEeeeeeecc---ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCC---CeeeccCCee
Q 005138 9 STQLIDGDGTFNV---SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFK---GRSQTTKGIW 82 (712)
Q Consensus 9 ~I~l~~l~k~y~~---~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~s---G~~~~t~gi~ 82 (712)
+|++.|+++.|.. .+++++++++..|+ +++|+||||||||||+++|+|+. +|++ |++...+...
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge------~~~I~G~nGaGKSTLl~~l~G~~----~p~~g~~G~i~i~g~~~ 74 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGS------WTALIGHNGSGKSTISKLINGLL----LPDDNPNSKITVDGITL 74 (282)
T ss_pred eEEEEEEEEEcCCCCccceeeEEEEEcCCC------EEEEECCCCCcHHHHHHHHhccc----CCCCCCCcEEEECCEEC
Confidence 6999999999942 47999999999999 99999999999999999999999 7887 6642211000
Q ss_pred -------eccccCC--------Cccchhcccc-------CCCcc--------------------cccchhhHHHHHHHHH
Q 005138 83 -------MARCAGI--------EPCTLIMDLE-------GTDGR--------------------ERGEDDTAFEKQSALF 120 (712)
Q Consensus 83 -------~~~~~~~--------~~~~~v~d~~-------g~~~~--------------------~r~~~~~~ferQrv~~ 120 (712)
+...+++ .....+.+.. +.... ......+.+|+||++|
T Consensus 75 ~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~l 154 (282)
T PRK13640 75 TAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAI 154 (282)
T ss_pred CcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHH
Confidence 0001111 0001111111 11100 0111223449999999
Q ss_pred HHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecC
Q 005138 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (712)
Q Consensus 121 A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~ 197 (712)
|+|++ ++||+||||++||+.. ...+.+.+.++.++.|+|||+|||+++.+. .|++++++.+ |+++..|+
T Consensus 155 aral~~~P~llllDEPt~gLD~~~------~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~-G~i~~~g~ 226 (282)
T PRK13640 155 AGILAVEPKIIILDESTSMLDPAG------KEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDD-GKLLAQGS 226 (282)
T ss_pred HHHHHcCCCEEEEECCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEEC-CEEEEeCC
Confidence 99999 9999999999999998 999999999987655899999999998875 6999998888 99999998
Q ss_pred cccccCC
Q 005138 198 KPQAHME 204 (712)
Q Consensus 198 ~~e~~~~ 204 (712)
+.+++..
T Consensus 227 ~~~~~~~ 233 (282)
T PRK13640 227 PVEIFSK 233 (282)
T ss_pred HHHHhcC
Confidence 7666543
No 178
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=1.5e-23 Score=215.84 Aligned_cols=176 Identities=15% Similarity=0.171 Sum_probs=130.9
Q ss_pred EEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC---------
Q 005138 10 TQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (712)
Q Consensus 10 I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~--------- 79 (712)
|.+.++++.|+ ..+++++++++..|+ +++|+||||||||||+++|+|+. +|..|++...+
T Consensus 1 l~~~~l~~~~~~~~il~~i~~~i~~Ge------~~~i~G~nGsGKSTLl~~l~g~~----~~~~G~i~~~g~~~~~~~~~ 70 (232)
T cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGE------FFTLLGPSGCGKTTLLRLIAGFE----TPTSGEILLDGKDITNLPPH 70 (232)
T ss_pred CEEEeEEEEeCCeeeeccceEEECCCC------EEEEECCCCCCHHHHHHHHhcCC----CCCceEEEECCEEcCcCChh
Confidence 46889999995 457999999999999 99999999999999999999999 89999743211
Q ss_pred --Ceee-ccccCCCccchhccc-------c------------------CCCc--ccccchhhHHHHHHHHHHHHHH---H
Q 005138 80 --GIWM-ARCAGIEPCTLIMDL-------E------------------GTDG--RERGEDDTAFEKQSALFALAVS---D 126 (712)
Q Consensus 80 --gi~~-~~~~~~~~~~~v~d~-------~------------------g~~~--~~r~~~~~~ferQrv~~A~Ala---~ 126 (712)
++.+ ...........+.+. . |+.. .......+..|+||+++|+|++ +
T Consensus 71 ~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~ 150 (232)
T cd03300 71 KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPK 150 (232)
T ss_pred hcceEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 1111 000000111011110 1 1110 0011122344999999999999 9
Q ss_pred HhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCccccc
Q 005138 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (712)
Q Consensus 127 iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~ 202 (712)
++|+||||++||+.. .+.+.+++.++.++.|.|||++||+++.+...|++++++.+ |++...+++++.+
T Consensus 151 llllDEP~~gLD~~~------~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~-G~~~~~~~~~~~~ 219 (232)
T cd03300 151 VLLLDEPLGALDLKL------RKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNK-GKIQQIGTPEEIY 219 (232)
T ss_pred EEEEcCCcccCCHHH------HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEEC-CEEEecCCHHHHH
Confidence 999999999999998 99999999998764589999999999998888999999988 9999888765443
No 179
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.89 E-value=4.9e-24 Score=218.63 Aligned_cols=169 Identities=18% Similarity=0.140 Sum_probs=127.8
Q ss_pred EEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee-eccc
Q 005138 10 TQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW-MARC 86 (712)
Q Consensus 10 I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~-~~~~ 86 (712)
+.+.++++.|+ ..++++++++++.|+ +++|+||||||||||+++|+|+. +|++|++...+. +. ....
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge------~~~i~G~nGsGKSTLl~~l~G~~----~p~~G~i~~~g~~~~~~~~~ 92 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGE------RIGLIGRNGAGKSTLLRLLAGIY----PPDSGTVTVRGRVSSLLGLG 92 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEEchhhccc
Confidence 77888999995 447999999999999 99999999999999999999998 899998543221 11 0101
Q ss_pred cCCCccchhcc-------------------------ccCCCcc--cccchhhHHHHHHHHHHHHHH---HHhhhccccCC
Q 005138 87 AGIEPCTLIMD-------------------------LEGTDGR--ERGEDDTAFEKQSALFALAVS---DIVLINMWCHD 136 (712)
Q Consensus 87 ~~~~~~~~v~d-------------------------~~g~~~~--~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~ 136 (712)
..+.+...+.+ ..|+... ......+..|+||+++|+|++ +++|+||||++
T Consensus 93 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~g 172 (224)
T cd03220 93 GGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAV 172 (224)
T ss_pred ccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 11111111111 1111110 111223455999999999999 99999999999
Q ss_pred CchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEec
Q 005138 137 IGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 137 LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g 196 (712)
||+.. ++.+.+.+.++.++ |.|||+||||++.+...|++++++.+ |+++..|
T Consensus 173 LD~~~------~~~~~~~l~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~-G~i~~~g 224 (224)
T cd03220 173 GDAAF------QEKCQRRLRELLKQ-GKTVILVSHDPSSIKRLCDRALVLEK-GKIRFDG 224 (224)
T ss_pred CCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEecC
Confidence 99998 99999999998765 89999999999998888999999987 9987654
No 180
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.1e-23 Score=217.15 Aligned_cols=179 Identities=17% Similarity=0.191 Sum_probs=131.6
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCC---CCCeeeccCC-e-
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA---FKGRSQTTKG-I- 81 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p---~sG~~~~t~g-i- 81 (712)
.+|++.|+++.|. ..+++++++++..|+ +++|+|||||||||||++|+|+... .| ++|++...+. +
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~~s~~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~~~--~p~~~~~G~i~~~g~~~~ 75 (252)
T PRK14239 4 PILQVSDLSVYYNKKKALNSVSLDFYPNE------ITALIGPSGSGKSTLLRSINRMNDL--NPEVTITGSIVYNGHNIY 75 (252)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCc------EEEEECCCCCCHHHHHHHHhccccc--CCCCCccceEEECCEECc
Confidence 3699999999995 457999999999999 9999999999999999999998400 25 4787432210 0
Q ss_pred -------eeccccC-------CCccchhcc-------ccCCCcc-------------------------cccchhhHHHH
Q 005138 82 -------WMARCAG-------IEPCTLIMD-------LEGTDGR-------------------------ERGEDDTAFEK 115 (712)
Q Consensus 82 -------~~~~~~~-------~~~~~~v~d-------~~g~~~~-------------------------~r~~~~~~fer 115 (712)
.+...++ ..+ ..+.+ ..+.... ......+..|+
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 76 SPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQ 154 (252)
T ss_pred CcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHH
Confidence 0001111 111 11111 0111100 01112344599
Q ss_pred HHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeE
Q 005138 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (712)
Q Consensus 116 Qrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I 192 (712)
||+++|+|++ ++||+||||++||+.. ...+.+++.++.+ +.|||+||||++.+...|++++++.+ |++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~-G~i 225 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPIS------AGKIEETLLGLKD--DYTMLLVTRSMQQASRISDRTGFFLD-GDL 225 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHH------HHHHHHHHHHHhh--CCeEEEEECCHHHHHHhCCEEEEEEC-CEE
Confidence 9999999999 9999999999999998 9999999999853 68999999999988888999999988 999
Q ss_pred EEecCcccccCC
Q 005138 193 WDSVPKPQAHME 204 (712)
Q Consensus 193 ~~~g~~~e~~~~ 204 (712)
+..|++.+.+.+
T Consensus 226 ~~~g~~~~~~~~ 237 (252)
T PRK14239 226 IEYNDTKQMFMN 237 (252)
T ss_pred EEeCCHHHHHhC
Confidence 999987776543
No 181
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.3e-23 Score=216.91 Aligned_cols=177 Identities=15% Similarity=0.185 Sum_probs=133.2
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCC-----CCCeeeccCC-
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA-----FKGRSQTTKG- 80 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p-----~sG~~~~t~g- 80 (712)
++|++.|+++.|+ ..++++++++++.|+ +++|+|||||||||||++|+|+. +| ++|++...+.
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge------~~~i~G~nGsGKSTLl~~l~G~~----~~~~~~~~~G~i~~~g~~ 72 (251)
T PRK14270 3 IKMESKNLNLWYGEKQALNDINLPIYENK------ITALIGPSGCGKSTFLRCLNRMN----DLISNVKIEGEVLLDGKN 72 (251)
T ss_pred cEEEEEEeEEEECCeeeeeceeEEEcCCC------EEEEECCCCCCHHHHHHHHHhcc----CcccCCCCccEEEECCEe
Confidence 5799999999995 457999999999999 99999999999999999999997 54 6787432211
Q ss_pred e--------eeccccCC-------Cccchhcc-------ccCCC-c------------------------ccccchhhHH
Q 005138 81 I--------WMARCAGI-------EPCTLIMD-------LEGTD-G------------------------RERGEDDTAF 113 (712)
Q Consensus 81 i--------~~~~~~~~-------~~~~~v~d-------~~g~~-~------------------------~~r~~~~~~f 113 (712)
+ .....+++ .+ ..+.+ ..+.. . .......+..
T Consensus 73 i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 151 (251)
T PRK14270 73 IYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGG 151 (251)
T ss_pred cccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHH
Confidence 0 00011111 01 11111 01110 0 0111223445
Q ss_pred HHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCC
Q 005138 114 EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ 190 (712)
Q Consensus 114 erQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G 190 (712)
|+||+++|+|++ +++|+||||++||+.. ...+.+++.++.+ +.|+|+||||++.+...|++++++.+ |
T Consensus 152 ~~qrv~laral~~~p~llllDEP~~~LD~~~------~~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~d~v~~l~~-G 222 (251)
T PRK14270 152 QQQRLCIARTIAVKPDVILMDEPTSALDPIS------TLKIEDLMVELKK--EYTIVIVTHNMQQASRVSDYTAFFLM-G 222 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHh--CCeEEEEEcCHHHHHHhcCEEEEEEC-C
Confidence 999999999999 9999999999999998 9999999999864 58999999999998888999999988 9
Q ss_pred eEEEecCcccccCC
Q 005138 191 KIWDSVPKPQAHME 204 (712)
Q Consensus 191 ~I~~~g~~~e~~~~ 204 (712)
+++..|++++.+.+
T Consensus 223 ~i~~~~~~~~~~~~ 236 (251)
T PRK14270 223 DLIEFNKTEKIFLE 236 (251)
T ss_pred eEEEeCCHHHHhcC
Confidence 99999988776644
No 182
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=2.9e-23 Score=213.58 Aligned_cols=172 Identities=19% Similarity=0.173 Sum_probs=128.7
Q ss_pred EEEEeeeeeecc---ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC-------
Q 005138 10 TQLIDGDGTFNV---SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (712)
Q Consensus 10 I~l~~l~k~y~~---~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~------- 79 (712)
|++.|+++.|+. .++++++++++.|+ +++|+||||||||||+++|+|+. +|++|++...+
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~ 70 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGE------TVALVGPSGSGKSTLVNLIPRFY----DVDSGRILIDGHDVRDYT 70 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCC------EEEEECCCCCCHHHHHHHHhccc----cCCCCEEEECCEEhhhCC
Confidence 468999999953 57999999999999 99999999999999999999999 89999853221
Q ss_pred ------Ceee-ccccCCCccchhccccCC------------------------------Cc--ccccchhhHHHHHHHHH
Q 005138 80 ------GIWM-ARCAGIEPCTLIMDLEGT------------------------------DG--RERGEDDTAFEKQSALF 120 (712)
Q Consensus 80 ------gi~~-~~~~~~~~~~~v~d~~g~------------------------------~~--~~r~~~~~~ferQrv~~ 120 (712)
++.+ .......+ ..+.+.... .. .......+..|+||+.+
T Consensus 71 ~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 149 (234)
T cd03251 71 LASLRRQIGLVSQDVFLFN-DTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAI 149 (234)
T ss_pred HHHHHhhEEEeCCCCeecc-ccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHH
Confidence 1110 00000000 011111100 00 00112334569999999
Q ss_pred HHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecC
Q 005138 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (712)
Q Consensus 121 A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~ 197 (712)
|+|++ +++|+||||++||+.. ...+.+.+.++. + +.|||+||||++.+.. |++++++.+ |++...++
T Consensus 150 a~al~~~p~lllLDEP~~~LD~~~------~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~-~d~v~~l~~-G~i~~~~~ 219 (234)
T cd03251 150 ARALLKDPPILILDEATSALDTES------ERLVQAALERLM-K-NRTTFVIAHRLSTIEN-ADRIVVLED-GKIVERGT 219 (234)
T ss_pred HHHHhcCCCEEEEeCccccCCHHH------HHHHHHHHHHhc-C-CCEEEEEecCHHHHhh-CCEEEEecC-CeEeeeCC
Confidence 99999 9999999999999998 999999999985 3 8999999999988875 999999888 99998887
Q ss_pred ccccc
Q 005138 198 KPQAH 202 (712)
Q Consensus 198 ~~e~~ 202 (712)
+.+..
T Consensus 220 ~~~~~ 224 (234)
T cd03251 220 HEELL 224 (234)
T ss_pred HHHHH
Confidence 65543
No 183
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.89 E-value=2.2e-23 Score=199.59 Aligned_cols=140 Identities=17% Similarity=0.190 Sum_probs=116.8
Q ss_pred EEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccccC
Q 005138 10 TQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG 88 (712)
Q Consensus 10 I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~~~ 88 (712)
+++.|+++.|+ ..++++++++++.|+ +++|+||||||||||+++|+|+. +|++|++...+.. ..+
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~~~~Ge------~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~~~~----~i~ 66 (144)
T cd03221 1 IELENLSKTYGGKLLLKDISLTINPGD------RIGLVGRNGAGKSTLLKLIAGEL----EPDEGIVTWGSTV----KIG 66 (144)
T ss_pred CEEEEEEEEECCceEEEeeEEEECCCC------EEEEECCCCCCHHHHHHHHcCCC----CCCceEEEECCeE----EEE
Confidence 46889999995 457999999999999 99999999999999999999999 8888875332210 011
Q ss_pred CCccchhccccCCCcccccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCce
Q 005138 89 IEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTT 165 (712)
Q Consensus 89 ~~~~~~v~d~~g~~~~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~t 165 (712)
++.+ .+..|+||+++|+|++ +++|+|||+++||+.. ...+.+.++++ +.|
T Consensus 67 -----~~~~------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~------~~~l~~~l~~~----~~t 119 (144)
T cd03221 67 -----YFEQ------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLES------IEALEEALKEY----PGT 119 (144)
T ss_pred -----EEcc------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH------HHHHHHHHHHc----CCE
Confidence 1111 5677999999999999 9999999999999998 88999998876 469
Q ss_pred EEEEecCCCCcccccccccceecCCe
Q 005138 166 LMFVIRDKTRTPLENLEPVLREDIQK 191 (712)
Q Consensus 166 iL~VtHDl~~~~~~~~~~~ll~~~G~ 191 (712)
+|++||+++.+...|++++++.+ |+
T Consensus 120 il~~th~~~~~~~~~d~v~~l~~-g~ 144 (144)
T cd03221 120 VILVSHDRYFLDQVATKIIELED-GK 144 (144)
T ss_pred EEEEECCHHHHHHhCCEEEEEeC-CC
Confidence 99999999999888999988877 64
No 184
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=1.8e-23 Score=217.44 Aligned_cols=176 Identities=15% Similarity=0.158 Sum_probs=130.4
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCC-----CCCeeeccCC-
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA-----FKGRSQTTKG- 80 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p-----~sG~~~~t~g- 80 (712)
++|++.|+++.|+ ..++++++++++.|+ +++|+||||||||||+++|+|+. +| ++|++...+.
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~----~~~~~~~~~G~v~~~g~~ 71 (249)
T PRK14253 2 NKFNIENLDLFYGENQALKSINLPIPARQ------VTALIGPSGCGKSTLLRCLNRMN----DLIEGVKITGKLTMDGED 71 (249)
T ss_pred CeEEEeccEEEECCeeeeecceEEecCCC------EEEEECCCCCCHHHHHHHHHhhc----ccccCCCCceEEEECCEE
Confidence 4799999999995 457999999999999 99999999999999999999998 54 4786332110
Q ss_pred e-------eeccccCC-------Cc------cchhccccCCCcc-------------------------cccchhhHHHH
Q 005138 81 I-------WMARCAGI-------EP------CTLIMDLEGTDGR-------------------------ERGEDDTAFEK 115 (712)
Q Consensus 81 i-------~~~~~~~~-------~~------~~~v~d~~g~~~~-------------------------~r~~~~~~fer 115 (712)
+ .....+++ .+ ..+.....+.... ......+..|+
T Consensus 72 ~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~ 151 (249)
T PRK14253 72 IYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQ 151 (249)
T ss_pred cccccchHHHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHH
Confidence 0 00001111 01 0000000111000 00112334599
Q ss_pred HHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeE
Q 005138 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (712)
Q Consensus 116 Qrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I 192 (712)
||++||+|++ ++||+||||++||+.. ...+.+++.++.+ +.|||+|||+++.+...|++++++.+ |++
T Consensus 152 qrv~laral~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~~--~~tii~~sh~~~~~~~~~d~i~~l~~-G~i 222 (249)
T PRK14253 152 QRLCIARTIAMEPDVILMDEPTSALDPIA------THKIEELMEELKK--NYTIVIVTHSMQQARRISDRTAFFLM-GEL 222 (249)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHhc--CCeEEEEecCHHHHHHhCCEEEEEEC-CEE
Confidence 9999999999 9999999999999998 9999999999854 58999999999999988999999998 999
Q ss_pred EEecCccccc
Q 005138 193 WDSVPKPQAH 202 (712)
Q Consensus 193 ~~~g~~~e~~ 202 (712)
...|++.+..
T Consensus 223 ~~~g~~~~~~ 232 (249)
T PRK14253 223 VEHDDTQVIF 232 (249)
T ss_pred EEeCCHHHHH
Confidence 9988765543
No 185
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.4e-23 Score=219.00 Aligned_cols=180 Identities=12% Similarity=0.099 Sum_probs=131.6
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCc-cCCCCCeeeccCC-e---
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFRE-MDAFKGRSQTTKG-I--- 81 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~-m~p~sG~~~~t~g-i--- 81 (712)
.+|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+..-. ..|++|++...+. +
T Consensus 20 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~ 93 (268)
T PRK14248 20 HILEVKDLSIYYGEKRAVNDISMDIEKHA------VTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDS 93 (268)
T ss_pred ceEEEEEEEEEeCCceeeeceEEEEcCCC------EEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccc
Confidence 4699999999995 457999999999999 99999999999999999999986100 0157887432210 0
Q ss_pred -----eeccccCC-------Cccchhcc-------cc-------------------CCCc------ccccchhhHHHHHH
Q 005138 82 -----WMARCAGI-------EPCTLIMD-------LE-------------------GTDG------RERGEDDTAFEKQS 117 (712)
Q Consensus 82 -----~~~~~~~~-------~~~~~v~d-------~~-------------------g~~~------~~r~~~~~~ferQr 117 (712)
.....+++ .+. .+.+ .. ++.. .......+..|+||
T Consensus 94 ~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qr 172 (268)
T PRK14248 94 NINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQR 172 (268)
T ss_pred cccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHH
Confidence 00001111 000 1111 00 1100 00112234459999
Q ss_pred HHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEE
Q 005138 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (712)
Q Consensus 118 v~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~ 194 (712)
++||+|++ ++|||||||++||+.. ...+.+.+.++.+ +.|||++|||++.+...|++++++.+ |+++.
T Consensus 173 l~laral~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~--~~tiii~tH~~~~~~~~~d~v~~l~~-G~i~~ 243 (268)
T PRK14248 173 LCIARTLAMKPAVLLLDEPASALDPIS------NAKIEELITELKE--EYSIIIVTHNMQQALRVSDRTAFFLN-GDLVE 243 (268)
T ss_pred HHHHHHHhCCCCEEEEcCCCcccCHHH------HHHHHHHHHHHhc--CCEEEEEEeCHHHHHHhCCEEEEEEC-CEEEE
Confidence 99999999 9999999999999998 9999999999853 68999999999988888999999988 99999
Q ss_pred ecCcccccC
Q 005138 195 SVPKPQAHM 203 (712)
Q Consensus 195 ~g~~~e~~~ 203 (712)
.|++++.+.
T Consensus 244 ~~~~~~~~~ 252 (268)
T PRK14248 244 YDQTEQIFT 252 (268)
T ss_pred eCCHHHHHh
Confidence 988766554
No 186
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.1e-23 Score=218.17 Aligned_cols=178 Identities=16% Similarity=0.209 Sum_probs=131.0
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCC-----CCCeeeccCC-
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA-----FKGRSQTTKG- 80 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p-----~sG~~~~t~g- 80 (712)
++|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +| ++|++...+.
T Consensus 3 ~~l~i~~v~~~~~~~~~l~~isl~i~~Ge------~~~i~G~nGsGKSTLl~~laGl~----~~~~~~~~~G~I~~~g~~ 72 (258)
T PRK14241 3 KRIDVKDLNIYYGSFHAVEDVNLNIEPRS------VTAFIGPSGCGKSTVLRTLNRMH----EVIPGARVEGEVLLDGED 72 (258)
T ss_pred ccEEEeeEEEEECCEeeeeeeeEEEcCCc------EEEEECCCCCCHHHHHHHHhccC----CcccCCCcceEEEECCEe
Confidence 3699999999995 457999999999999 99999999999999999999998 53 6887432211
Q ss_pred ee--------eccccC-------CCccchhcc-------cc-------------------CCCc------ccccchhhHH
Q 005138 81 IW--------MARCAG-------IEPCTLIMD-------LE-------------------GTDG------RERGEDDTAF 113 (712)
Q Consensus 81 i~--------~~~~~~-------~~~~~~v~d-------~~-------------------g~~~------~~r~~~~~~f 113 (712)
+. +...++ ..+...+.+ .. |+.. .......+..
T Consensus 73 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 152 (258)
T PRK14241 73 LYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGG 152 (258)
T ss_pred ccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHH
Confidence 00 000111 011111111 00 1100 0001223445
Q ss_pred HHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccccccccee---
Q 005138 114 EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRE--- 187 (712)
Q Consensus 114 erQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~--- 187 (712)
|+||++||+|++ ++||+||||++||+.. ...+.+++.++. + ++|+|+||||++.+...|++++++.
T Consensus 153 ~~qrv~laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~-~-~~tviivsH~~~~~~~~~d~i~~l~~~~ 224 (258)
T PRK14241 153 QQQRLCIARAIAVEPDVLLMDEPCSALDPIS------TLAIEDLINELK-Q-DYTIVIVTHNMQQAARVSDQTAFFNLEA 224 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhCCEEEEEeccc
Confidence 999999999999 9999999999999998 999999999985 3 6899999999999888899998886
Q ss_pred --cCCeEEEecCcccccC
Q 005138 188 --DIQKIWDSVPKPQAHM 203 (712)
Q Consensus 188 --~~G~I~~~g~~~e~~~ 203 (712)
+.|+|+..|++.+.+.
T Consensus 225 ~~~~g~i~~~~~~~~~~~ 242 (258)
T PRK14241 225 TGKPGRLVEIDDTEKIFS 242 (258)
T ss_pred CCCCceEEecCCHHHHHh
Confidence 2499999988766543
No 187
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.3e-23 Score=217.03 Aligned_cols=177 Identities=15% Similarity=0.172 Sum_probs=131.6
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccC--C---CCCeeeccCC-
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD--A---FKGRSQTTKG- 80 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~--p---~sG~~~~t~g- 80 (712)
..|++.|+++.|+ ..++++++++++.|+ +++|+|||||||||||++|+|+. + | ++|++...+.
T Consensus 3 ~~l~~~nl~~~~~~~~~l~~isl~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~----~~~~~~~~~G~v~~~g~~ 72 (252)
T PRK14256 3 NKVKLEQLNVHFGKNHAVKDVSMDFPENS------VTAIIGPSGCGKSTVLRSINRMH----DLVPSARVTGKILLDDTD 72 (252)
T ss_pred cEEEEEEEEEEeCCeeEEecceEEEcCCC------EEEEECCCCCCHHHHHHHHHhcc----cCCCCCCCceEEEECCEE
Confidence 3589999999995 457999999999999 99999999999999999999997 4 3 5787432211
Q ss_pred e--------eeccccC-------CCccchhcc-------c-------------------cCCCc------ccccchhhHH
Q 005138 81 I--------WMARCAG-------IEPCTLIMD-------L-------------------EGTDG------RERGEDDTAF 113 (712)
Q Consensus 81 i--------~~~~~~~-------~~~~~~v~d-------~-------------------~g~~~------~~r~~~~~~f 113 (712)
+ .+...++ ..+...+.+ . .|+.. .......+..
T Consensus 73 i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 152 (252)
T PRK14256 73 IYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGG 152 (252)
T ss_pred cccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHH
Confidence 0 0011111 011001100 0 01100 0011223445
Q ss_pred HHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCC
Q 005138 114 EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ 190 (712)
Q Consensus 114 erQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G 190 (712)
|+||++||+|++ ++||+||||++||+.. ...+.+.+.++.+ +.|||+||||++.+...|++++++.+ |
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~------~~~l~~~l~~~~~--~~tiiivsH~~~~~~~~~d~i~~l~~-G 223 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPIS------TLKIEELIEELKE--KYTIIIVTHNMQQAARVSDYTAFFYM-G 223 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHh--CCcEEEEECCHHHHHhhCCEEEEEEC-C
Confidence 999999999999 9999999999999998 9999999999864 58999999999999888999999988 9
Q ss_pred eEEEecCcccccC
Q 005138 191 KIWDSVPKPQAHM 203 (712)
Q Consensus 191 ~I~~~g~~~e~~~ 203 (712)
++...|++.+.+.
T Consensus 224 ~i~~~~~~~~~~~ 236 (252)
T PRK14256 224 DLVECGETKKIFT 236 (252)
T ss_pred EEEEeCCHHHHHh
Confidence 9999998776554
No 188
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.89 E-value=1.2e-23 Score=235.31 Aligned_cols=180 Identities=15% Similarity=0.175 Sum_probs=140.6
Q ss_pred ccEEEEeeeeeecc-----ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCC----CCeeecc
Q 005138 8 CSTQLIDGDGTFNV-----SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAF----KGRSQTT 78 (712)
Q Consensus 8 ~~I~l~~l~k~y~~-----~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~----sG~~~~t 78 (712)
+++++.|+++.|.. .++++++|++..|+ ++||+|.+||||||+.++|+|+. ++. +|++...
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE------~lgIvGESGsGKSt~a~~i~gll----~~~~~~~~G~I~~~ 73 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGE------ILGIVGESGSGKSTLALALMGLL----PEGGRITSGEVILD 73 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCc------EEEEEcCCCCCHHHHHHHHhccC----CCCCcccceEEEEC
Confidence 37999999999942 37899999999999 99999999999999999999999 443 5653221
Q ss_pred CC-------------------eeeccccC-CCccch--------------------------hccccCCCccccc----c
Q 005138 79 KG-------------------IWMARCAG-IEPCTL--------------------------IMDLEGTDGRERG----E 108 (712)
Q Consensus 79 ~g-------------------i~~~~~~~-~~~~~~--------------------------v~d~~g~~~~~r~----~ 108 (712)
+. +.++.... +.+.+. +++..|++...+. .
T Consensus 74 g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPh 153 (539)
T COG1123 74 GRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPH 153 (539)
T ss_pred CcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCc
Confidence 11 00000000 111111 1222344433322 2
Q ss_pred hhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccc
Q 005138 109 DDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVL 185 (712)
Q Consensus 109 ~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~l 185 (712)
..++.|||||.+|+|++ ++||+||||++||+.. +.+|+++++++.++.|+++||||||++.+..+||++++
T Consensus 154 eLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~------q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~V 227 (539)
T COG1123 154 QLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTT------QAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVV 227 (539)
T ss_pred ccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHH------HHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEE
Confidence 33556999999999999 9999999999999998 99999999999988999999999999999999999999
Q ss_pred eecCCeEEEecCcccccCC
Q 005138 186 REDIQKIWDSVPKPQAHME 204 (712)
Q Consensus 186 l~~~G~I~~~g~~~e~~~~ 204 (712)
|.+ |+++..|++.+++.+
T Consensus 228 m~~-G~iVE~G~~~~i~~~ 245 (539)
T COG1123 228 MYK-GEIVETGPTEEILSN 245 (539)
T ss_pred EEC-CEEEEecCHHHHHhc
Confidence 999 999999999888754
No 189
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.1e-23 Score=217.11 Aligned_cols=177 Identities=14% Similarity=0.105 Sum_probs=133.1
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeec--
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMA-- 84 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~-- 84 (712)
++|++.++++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+.+.+.
T Consensus 9 ~~i~~~~~~~~~~~~~~l~~vs~~i~~Ge------~~~i~G~nGsGKSTLl~~iaG~~----~~~~G~v~~~G~~~~~g~ 78 (257)
T PRK14246 9 DVFNISRLYLYINDKAILKDITIKIPNNS------IFGIMGPSGSGKSTLLKVLNRLI----EIYDSKIKVDGKVLYFGK 78 (257)
T ss_pred hheeeeeEEEecCCceeEeceEEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCcCceeEcCEEEECCc
Confidence 4799999999995 457999999999999 99999999999999999999999 8888764322111110
Q ss_pred -----------cccC-------CCccchhccc--------------------------cCCCc------ccccchhhHHH
Q 005138 85 -----------RCAG-------IEPCTLIMDL--------------------------EGTDG------RERGEDDTAFE 114 (712)
Q Consensus 85 -----------~~~~-------~~~~~~v~d~--------------------------~g~~~------~~r~~~~~~fe 114 (712)
..++ ..+...+.+. .|+.. ..........|
T Consensus 79 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~ 158 (257)
T PRK14246 79 DIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQ 158 (257)
T ss_pred ccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHH
Confidence 0011 1111111110 01110 00111223459
Q ss_pred HHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCe
Q 005138 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (712)
Q Consensus 115 rQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~ 191 (712)
+||+++|+|++ +++|+||||++||+.. .+.+.+.+.++.+ +.|||+|||+++.+...|++++++.+ |+
T Consensus 159 ~qrl~laral~~~P~llllDEPt~~LD~~~------~~~l~~~l~~~~~--~~tiilvsh~~~~~~~~~d~v~~l~~-g~ 229 (257)
T PRK14246 159 QQRLTIARALALKPKVLLMDEPTSMIDIVN------SQAIEKLITELKN--EIAIVIVSHNPQQVARVADYVAFLYN-GE 229 (257)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHhc--CcEEEEEECCHHHHHHhCCEEEEEEC-CE
Confidence 99999999999 9999999999999998 9999999998853 68999999999999888999999988 99
Q ss_pred EEEecCcccccC
Q 005138 192 IWDSVPKPQAHM 203 (712)
Q Consensus 192 I~~~g~~~e~~~ 203 (712)
+...|++.+...
T Consensus 230 i~~~g~~~~~~~ 241 (257)
T PRK14246 230 LVEWGSSNEIFT 241 (257)
T ss_pred EEEECCHHHHHh
Confidence 999988776553
No 190
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.3e-23 Score=216.74 Aligned_cols=181 Identities=14% Similarity=0.159 Sum_probs=132.2
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCC--CCCeeeccCC-ee-
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA--FKGRSQTTKG-IW- 82 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p--~sG~~~~t~g-i~- 82 (712)
++|++.|+++.|+ ..++++++++++.|+ +++|+||||||||||+++|+|+.. ..+| ++|++...+. +.
T Consensus 2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~Ge------~~~i~G~nGsGKSTLl~~i~Gl~~-~~~~~~~~G~i~~~g~~~~~ 74 (250)
T PRK14245 2 VKIDARDVNFWYGDFHALKGISMEIEEKS------VVAFIGPSGCGKSTFLRLFNRMND-LIPATRLEGEIRIDGRNIYD 74 (250)
T ss_pred cEEEEEEEEEEECCEeEEeeeeEEEeCCC------EEEEECCCCCCHHHHHHHHhhhhc-ccCCCCCceEEEECCEeccc
Confidence 4799999999995 457999999999999 999999999999999999999720 0033 4787432211 00
Q ss_pred -------eccccCC-------Cc------cchhccc-------------------cCCCc------ccccchhhHHHHHH
Q 005138 83 -------MARCAGI-------EP------CTLIMDL-------------------EGTDG------RERGEDDTAFEKQS 117 (712)
Q Consensus 83 -------~~~~~~~-------~~------~~~v~d~-------------------~g~~~------~~r~~~~~~ferQr 117 (712)
....+++ .+ ..+.... .|+.. .......+..|+||
T Consensus 75 ~~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14245 75 KGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQR 154 (250)
T ss_pred ccccHHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHH
Confidence 0000110 00 0000000 11110 01112334559999
Q ss_pred HHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEE
Q 005138 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (712)
Q Consensus 118 v~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~ 194 (712)
+++|+|++ ++||+||||++||+.. ...+.+.+.++. + ++|||+||||++.+...|++++++.+ |+++.
T Consensus 155 v~laral~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~v~~l~~-G~~~~ 225 (250)
T PRK14245 155 LCIARAMAVSPSVLLMDEPASALDPIS------TAKVEELIHELK-K-DYTIVIVTHNMQQAARVSDKTAFFYM-GEMVE 225 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhCCEEEEEEC-CEEEE
Confidence 99999999 9999999999999998 999999999984 3 78999999999998888999999988 99999
Q ss_pred ecCcccccCC
Q 005138 195 SVPKPQAHME 204 (712)
Q Consensus 195 ~g~~~e~~~~ 204 (712)
.|++++++.+
T Consensus 226 ~~~~~~~~~~ 235 (250)
T PRK14245 226 YDDTKKIFTN 235 (250)
T ss_pred ECCHHHHhcC
Confidence 9988776543
No 191
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=3.6e-23 Score=203.37 Aligned_cols=160 Identities=14% Similarity=0.128 Sum_probs=119.9
Q ss_pred EEEEeeeeeecc---ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccc
Q 005138 10 TQLIDGDGTFNV---SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC 86 (712)
Q Consensus 10 I~l~~l~k~y~~---~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~ 86 (712)
|++.|+++.|+. .+++++++++..|+ +++|+||||||||||+++|+|+. +|++|++...+ ......
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~------~~~l~G~nGsGKstLl~~i~G~~----~~~~G~i~~~g-~~~~~~ 69 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGE------KVAIVGPSGSGKSTLLKLLLRLY----DPTSGEILIDG-VDLRDL 69 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCC------EEEEECCCCCCHHHHHHHHHcCC----CCCCCEEEECC-EEhhhc
Confidence 468899999953 57999999999999 99999999999999999999999 89999854322 111000
Q ss_pred c--C-CCccchhccccCCCcccccch--hhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHh
Q 005138 87 A--G-IEPCTLIMDLEGTDGRERGED--DTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRL 158 (712)
Q Consensus 87 ~--~-~~~~~~v~d~~g~~~~~r~~~--~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L 158 (712)
. . .....++.+...... .+..+ .+..|+||+++|+|++ ++||+||||++||+.. ...+.+++.++
T Consensus 70 ~~~~~~~~i~~~~~~~~~~~-~t~~e~lLS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~------~~~l~~~l~~~ 142 (171)
T cd03228 70 DLESLRKNIAYVPQDPFLFS-GTIRENILSGGQRQRIAIARALLRDPPILILDEATSALDPET------EALILEALRAL 142 (171)
T ss_pred CHHHHHhhEEEEcCCchhcc-chHHHHhhCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHH------HHHHHHHHHHh
Confidence 0 0 000011111111111 11111 4567999999999999 9999999999999998 99999999998
Q ss_pred hCCCCceEEEEecCCCCcccccccccceecCCe
Q 005138 159 FSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (712)
Q Consensus 159 ~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~ 191 (712)
. + ++|+|++|||++.+.. |++++++.+ |+
T Consensus 143 ~-~-~~tii~~sh~~~~~~~-~d~~~~l~~-g~ 171 (171)
T cd03228 143 A-K-GKTVIVIAHRLSTIRD-ADRIIVLDD-GR 171 (171)
T ss_pred c-C-CCEEEEEecCHHHHHh-CCEEEEEcC-CC
Confidence 5 3 6999999999998876 999888876 63
No 192
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.89 E-value=5.3e-23 Score=206.41 Aligned_cols=166 Identities=16% Similarity=0.133 Sum_probs=125.6
Q ss_pred cEEEEeeeeeec-------cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCe
Q 005138 9 STQLIDGDGTFN-------VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGI 81 (712)
Q Consensus 9 ~I~l~~l~k~y~-------~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi 81 (712)
.|++.++++.|. ..++++++++++.|+ +++|+||||||||||+++|+|+.. -+|++|++...+..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge------~~~l~G~nGsGKStLl~~i~Gl~~--~~~~~G~i~~~g~~ 74 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGE------LTAIMGPSGAGKSTLLNALAGRRT--GLGVSGEVLINGRP 74 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCc------EEEEECCCCCCHHHHHHHHhCCCC--CCCCceEEEECCEe
Confidence 488999999995 357999999999999 999999999999999999999851 03778875332210
Q ss_pred ----eeccccCCCccchhccccCCCccccc----------chhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhC
Q 005138 82 ----WMARCAGIEPCTLIMDLEGTDGRERG----------EDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAAN 144 (712)
Q Consensus 82 ----~~~~~~~~~~~~~v~d~~g~~~~~r~----------~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~ 144 (712)
.....++ ++.+........+. ...+..|+||+++|+|++ +++|+|||+++||+..
T Consensus 75 ~~~~~~~~~i~-----~~~q~~~~~~~~t~~~~i~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~--- 146 (194)
T cd03213 75 LDKRSFRKIIG-----YVPQDDILHPTLTVRETLMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSS--- 146 (194)
T ss_pred CchHhhhheEE-----EccCcccCCCCCcHHHHHHHHHHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHH---
Confidence 0011111 11111111111010 034567999999999999 9999999999999998
Q ss_pred hhhHHHHHHHHHHhhCCCCceEEEEecCCC-CcccccccccceecCCeEEEe
Q 005138 145 KPLLKTVFQVMMRLFSPRKTTLMFVIRDKT-RTPLENLEPVLREDIQKIWDS 195 (712)
Q Consensus 145 ~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~-~~~~~~~~~~ll~~~G~I~~~ 195 (712)
.+.+.+.+.++.++ |+|+|++|||++ .+...|++++++.+ |++...
T Consensus 147 ---~~~l~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~ 193 (194)
T cd03213 147 ---ALQVMSLLRRLADT-GRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYF 193 (194)
T ss_pred ---HHHHHHHHHHHHhC-CCEEEEEecCchHHHHHhcCEEEEEeC-CEEEec
Confidence 99999999998764 899999999996 67778999999988 998754
No 193
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.1e-23 Score=219.79 Aligned_cols=177 Identities=18% Similarity=0.254 Sum_probs=131.8
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccC-----CCCCeeeccCC-
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD-----AFKGRSQTTKG- 80 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~-----p~sG~~~~t~g- 80 (712)
.+|++.|+++.|+ ..++++++|++..|+ +++|+|||||||||||++|+|+. + |++|++...+.
T Consensus 12 ~~l~i~nl~~~~~~~~il~~is~~i~~Ge------~~~l~G~nGsGKSTLl~~l~Gl~----~~~~~~p~~G~v~~~g~~ 81 (269)
T PRK14259 12 IIISLQNVTISYGTFEAVKNVFCDIPRGK------VTALIGPSGCGKSTVLRSLNRMN----DLIEGCSLKGRVLFDGTD 81 (269)
T ss_pred ceEEEEeEEEEECCEEEEcceEEEEcCCC------EEEEECCCCCCHHHHHHHHhccc----cccCCCCCceEEEECCEE
Confidence 4799999999995 457999999999999 99999999999999999999997 5 57887532211
Q ss_pred ee--------eccccCC-------Cccchhccc-------cCCCc-----------------------ccccchhhHHHH
Q 005138 81 IW--------MARCAGI-------EPCTLIMDL-------EGTDG-----------------------RERGEDDTAFEK 115 (712)
Q Consensus 81 i~--------~~~~~~~-------~~~~~v~d~-------~g~~~-----------------------~~r~~~~~~fer 115 (712)
+. +...+++ .+. .+.+. .+... .......+..|+
T Consensus 82 i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 160 (269)
T PRK14259 82 LYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQ 160 (269)
T ss_pred cccccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHH
Confidence 00 0011111 000 11110 01100 000112334599
Q ss_pred HHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceec----
Q 005138 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED---- 188 (712)
Q Consensus 116 Qrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~---- 188 (712)
||++||+|++ ++||+||||++||+.. ...+.+++.++. + +.|||+||||++.+...|++++++.+
T Consensus 161 qrl~laral~~~p~lllLDEPt~gLD~~~------~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l~~~~~~ 232 (269)
T PRK14259 161 QRLCIARTIAIEPEVILMDEPCSALDPIS------TLKIEETMHELK-K-NFTIVIVTHNMQQAVRVSDMTAFFNAEEVE 232 (269)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEeccccc
Confidence 9999999999 9999999999999998 999999999984 3 68999999999999999999999985
Q ss_pred ------CCeEEEecCcccccC
Q 005138 189 ------IQKIWDSVPKPQAHM 203 (712)
Q Consensus 189 ------~G~I~~~g~~~e~~~ 203 (712)
.|+++..|++.+++.
T Consensus 233 ~~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 233 GGSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred cccccccceEEEeCCHHHHHh
Confidence 367888888776654
No 194
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2e-23 Score=243.94 Aligned_cols=179 Identities=15% Similarity=0.109 Sum_probs=137.6
Q ss_pred ccEEEEeeeeeec------------cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCee
Q 005138 8 CSTQLIDGDGTFN------------VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS 75 (712)
Q Consensus 8 ~~I~l~~l~k~y~------------~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~ 75 (712)
++|++.|+++.|. ..++++++|+|..|+ +++|+|+||||||||+++|+|+. +|++|++
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge------~~~lvG~nGsGKSTLlk~i~Gl~----~p~~G~I 381 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGE------TLSLVGESGSGKSTTGRALLRLV----ESQGGEI 381 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCC------EEEEECCCCCCHHHHHHHHHcCC----CCCCcEE
Confidence 4799999999994 246899999999999 99999999999999999999999 8999985
Q ss_pred eccCC-ee---------eccccC---------CCccchhccc--------------------------cCCCc---cccc
Q 005138 76 QTTKG-IW---------MARCAG---------IEPCTLIMDL--------------------------EGTDG---RERG 107 (712)
Q Consensus 76 ~~t~g-i~---------~~~~~~---------~~~~~~v~d~--------------------------~g~~~---~~r~ 107 (712)
...+. +. +...++ ..+...+.+. .|+.. ....
T Consensus 382 ~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~ 461 (623)
T PRK10261 382 IFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP 461 (623)
T ss_pred EECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCc
Confidence 43211 00 001111 1111111111 11210 0111
Q ss_pred chhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccccccc
Q 005138 108 EDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPV 184 (712)
Q Consensus 108 ~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ 184 (712)
...+..||||++||+|++ ++||+||||++||+.. ...+++++.++.++.|.||||||||++.+..+|++++
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~------~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~ 535 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSI------RGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVA 535 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 223445999999999999 9999999999999998 9999999999976668999999999999999999999
Q ss_pred ceecCCeEEEecCcccccC
Q 005138 185 LREDIQKIWDSVPKPQAHM 203 (712)
Q Consensus 185 ll~~~G~I~~~g~~~e~~~ 203 (712)
+|.+ |+|+..|++.+++.
T Consensus 536 vl~~-G~iv~~g~~~~i~~ 553 (623)
T PRK10261 536 VMYL-GQIVEIGPRRAVFE 553 (623)
T ss_pred EEEC-CEEEEecCHHHHhc
Confidence 9988 99999998877664
No 195
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2e-23 Score=243.94 Aligned_cols=179 Identities=12% Similarity=0.087 Sum_probs=137.8
Q ss_pred cccEEEEeeeeeecc-----ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCe
Q 005138 7 CCSTQLIDGDGTFNV-----SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGI 81 (712)
Q Consensus 7 ~~~I~l~~l~k~y~~-----~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi 81 (712)
.++|++.|+++.|+. .++++++|++..|+ +++|+||||||||||||+|+|+. +|++|++... |.
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge------~~~lvG~nGsGKSTLl~~l~Gll----~p~~G~i~~~-g~ 78 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGE------TLAIVGESGSGKSVTALALMRLL----EQAGGLVQCD-KM 78 (623)
T ss_pred CceEEEeceEEEecCCCCceeEEEeeEEEECCCC------EEEEECCCCChHHHHHHHHHcCC----CCCCeEEEEC-CE
Confidence 457999999999941 47999999999999 99999999999999999999999 7888974321 11
Q ss_pred ee----------------------ccccCC---------Cccchhc--------------------------cccCCCc-
Q 005138 82 WM----------------------ARCAGI---------EPCTLIM--------------------------DLEGTDG- 103 (712)
Q Consensus 82 ~~----------------------~~~~~~---------~~~~~v~--------------------------d~~g~~~- 103 (712)
.+ ...+++ .+...+. +..|+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~ 158 (623)
T PRK10261 79 LLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA 158 (623)
T ss_pred EeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh
Confidence 00 001111 1111111 1112221
Q ss_pred ----ccccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCc
Q 005138 104 ----RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT 176 (712)
Q Consensus 104 ----~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~ 176 (712)
.......+..|+||++||+|++ ++||+||||++||+.. ...+.++++++.++.|+|||+||||++.+
T Consensus 159 ~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~------~~~l~~ll~~l~~~~g~tvi~itHdl~~~ 232 (623)
T PRK10261 159 QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTI------QAQILQLIKVLQKEMSMGVIFITHDMGVV 232 (623)
T ss_pred hhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHH------HHHHHHHHHHHHHhcCCEEEEEcCCHHHH
Confidence 1112234556999999999999 9999999999999998 99999999999765689999999999999
Q ss_pred ccccccccceecCCeEEEecCcccccC
Q 005138 177 PLENLEPVLREDIQKIWDSVPKPQAHM 203 (712)
Q Consensus 177 ~~~~~~~~ll~~~G~I~~~g~~~e~~~ 203 (712)
...|+++++|.+ |+++..|++.+++.
T Consensus 233 ~~~adri~vl~~-G~i~~~g~~~~~~~ 258 (623)
T PRK10261 233 AEIADRVLVMYQ-GEAVETGSVEQIFH 258 (623)
T ss_pred HHhCCEEEEeeC-CeecccCCHHHhhc
Confidence 889999999998 99999888776653
No 196
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.8e-23 Score=217.43 Aligned_cols=177 Identities=13% Similarity=0.147 Sum_probs=131.7
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccC--C---CCCeeeccCC-
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD--A---FKGRSQTTKG- 80 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~--p---~sG~~~~t~g- 80 (712)
.+|++.|+++.|+ ..++++++++++.|+ +++|+|||||||||||++|+|+. + | ++|++...+.
T Consensus 11 ~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge------~~~l~G~nGsGKSTLl~~l~G~~----~~~p~~~~~G~i~~~g~~ 80 (259)
T PRK14274 11 EVYQINGMNLWYGQHHALKNINLSIPENE------VTAIIGPSGCGKSTFIKTLNLMI----QMVPNVKLTGEMNYNGSN 80 (259)
T ss_pred ceEEEeeEEEEECCeeeEEeeEEEEcCCC------EEEEECCCCCCHHHHHHHHHhhc----cCCCCCCCceEEEECCEE
Confidence 4799999999995 457999999999999 99999999999999999999998 5 3 5787432110
Q ss_pred ee--------eccccCC-------Ccc------chhcccc-------------------CCCc------ccccchhhHHH
Q 005138 81 IW--------MARCAGI-------EPC------TLIMDLE-------------------GTDG------RERGEDDTAFE 114 (712)
Q Consensus 81 i~--------~~~~~~~-------~~~------~~v~d~~-------------------g~~~------~~r~~~~~~fe 114 (712)
+. +...+++ .+. .+..... |+.. .......+..|
T Consensus 81 ~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq 160 (259)
T PRK14274 81 ILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQ 160 (259)
T ss_pred ccccccCHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHH
Confidence 00 0001110 010 0000111 1100 00111234459
Q ss_pred HHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCe
Q 005138 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (712)
Q Consensus 115 rQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~ 191 (712)
+||+++|++++ +++|+||||++||+.. ...+.+.+.++. + +.|+|+||||++.+...|++++++.+ |+
T Consensus 161 ~qrv~laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l~~-G~ 231 (259)
T PRK14274 161 QQRLCIARALATNPDVLLMDEPTSALDPVS------TRKIEELILKLK-E-KYTIVIVTHNMQQAARVSDQTAFFYM-GE 231 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHh-c-CCEEEEEEcCHHHHHHhCCEEEEEEC-CE
Confidence 99999999999 9999999999999998 999999999985 3 68999999999998888999999988 99
Q ss_pred EEEecCcccccC
Q 005138 192 IWDSVPKPQAHM 203 (712)
Q Consensus 192 I~~~g~~~e~~~ 203 (712)
+...|++++.+.
T Consensus 232 i~~~g~~~~~~~ 243 (259)
T PRK14274 232 LVECNDTNKMFS 243 (259)
T ss_pred EEEECCHHHHhh
Confidence 999998777654
No 197
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.2e-23 Score=215.65 Aligned_cols=174 Identities=16% Similarity=0.221 Sum_probs=130.0
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCC-----CCCeeeccCC-e
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA-----FKGRSQTTKG-I 81 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p-----~sG~~~~t~g-i 81 (712)
+|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +| ++|++...+. +
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge------~~~i~G~nGsGKSTLl~~i~G~~----~~~~~~~~~G~i~~~g~~~ 72 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEENQ------VTALIGPSGCGKSTFLRTLNRMN----DLIPSVKIEGEVLLDGQDI 72 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCCC------EEEEECCCCCCHHHHHHHHhccc----cccCCCCCceEEEECCEEc
Confidence 689999999995 457999999999999 99999999999999999999986 42 5787432211 0
Q ss_pred e--------eccccCC-------Cccchhcc-------ccCCCc-------------------------ccccchhhHHH
Q 005138 82 W--------MARCAGI-------EPCTLIMD-------LEGTDG-------------------------RERGEDDTAFE 114 (712)
Q Consensus 82 ~--------~~~~~~~-------~~~~~v~d-------~~g~~~-------------------------~~r~~~~~~fe 114 (712)
. ....+++ .+ ..+.+ ..+... .......+..|
T Consensus 73 ~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~ 151 (250)
T PRK14240 73 YKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQ 151 (250)
T ss_pred cccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHH
Confidence 0 0011111 11 11111 011100 00111234459
Q ss_pred HHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCe
Q 005138 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (712)
Q Consensus 115 rQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~ 191 (712)
+||++||+|++ ++||+||||++||+.. ...+.+.+.++. + +.|+|+||||++.+...|++++++.+ |+
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~v~~l~~-G~ 222 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPIS------TLKIEELIQELK-K-DYTIVIVTHNMQQASRISDKTAFFLN-GE 222 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHh-c-CCeEEEEEeCHHHHHhhCCEEEEEEC-CE
Confidence 99999999999 9999999999999998 999999999984 3 78999999999988888999999988 99
Q ss_pred EEEecCccccc
Q 005138 192 IWDSVPKPQAH 202 (712)
Q Consensus 192 I~~~g~~~e~~ 202 (712)
++..+++.+.+
T Consensus 223 i~~~~~~~~~~ 233 (250)
T PRK14240 223 IVEFGDTVDLF 233 (250)
T ss_pred EEEeCCHHHHH
Confidence 99988876654
No 198
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.89 E-value=4.3e-23 Score=212.84 Aligned_cols=173 Identities=16% Similarity=0.132 Sum_probs=129.4
Q ss_pred EEEEeeeeeec---cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC------
Q 005138 10 TQLIDGDGTFN---VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------ 80 (712)
Q Consensus 10 I~l~~l~k~y~---~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g------ 80 (712)
|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+.
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~~ 70 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGE------VVGIVGRSGSGKSTLTKLIQRFY----VPENGRVLVDGHDLALAD 70 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCC------EEEEECCCCCCHHHHHHHHhcCc----CCCCCEEEECCeehHhcC
Confidence 46899999994 247899999999999 99999999999999999999999 899998532210
Q ss_pred -------ee-eccccCCCccchhcccc-----CCCc---------------------------ccccchhhHHHHHHHHH
Q 005138 81 -------IW-MARCAGIEPCTLIMDLE-----GTDG---------------------------RERGEDDTAFEKQSALF 120 (712)
Q Consensus 81 -------i~-~~~~~~~~~~~~v~d~~-----g~~~---------------------------~~r~~~~~~ferQrv~~ 120 (712)
+. +.......+ ..+.+.. +... .......+..|+||++|
T Consensus 71 ~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~l 149 (237)
T cd03252 71 PAWLRRQVGVVLQENVLFN-RSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAI 149 (237)
T ss_pred HHHHhhcEEEEcCCchhcc-chHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHH
Confidence 10 000000000 0111110 0000 00112345569999999
Q ss_pred HHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecC
Q 005138 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (712)
Q Consensus 121 A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~ 197 (712)
|+|++ ++||+||||++||+.. ...+.+.+.++. + |.|||++|||++.+. .|++++++.+ |+++..|+
T Consensus 150 aral~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~-~-~~tiii~sH~~~~~~-~~d~v~~l~~-G~i~~~~~ 219 (237)
T cd03252 150 ARALIHNPRILIFDEATSALDYES------EHAIMRNMHDIC-A-GRTVIIIAHRLSTVK-NADRIIVMEK-GRIVEQGS 219 (237)
T ss_pred HHHHhhCCCEEEEeCCcccCCHHH------HHHHHHHHHHhc-C-CCEEEEEeCCHHHHH-hCCEEEEEEC-CEEEEEcC
Confidence 99999 9999999999999998 999999999985 4 899999999998875 5899998888 99999888
Q ss_pred cccccC
Q 005138 198 KPQAHM 203 (712)
Q Consensus 198 ~~e~~~ 203 (712)
+++.+.
T Consensus 220 ~~~~~~ 225 (237)
T cd03252 220 HDELLA 225 (237)
T ss_pred HHHHHh
Confidence 766543
No 199
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.89 E-value=3.1e-23 Score=217.96 Aligned_cols=177 Identities=15% Similarity=0.157 Sum_probs=132.4
Q ss_pred ccEEEEeeeeeecc---------------------ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccC
Q 005138 8 CSTQLIDGDGTFNV---------------------SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFR 66 (712)
Q Consensus 8 ~~I~l~~l~k~y~~---------------------~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~ 66 (712)
..|.+.|++|.|.. .+++++++++..|+ +++|+|||||||||||++|+|+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge------~~~liG~NGsGKSTLlk~L~Gl~-- 74 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGD------VIGLVGINGSGKSTLSNIIGGSL-- 74 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHhCCc--
Confidence 35889999998832 14678999999999 99999999999999999999999
Q ss_pred ccCCCCCeeeccCCe-eeccccCCCccchhccc-------cCCCcc--------------------cccchhhHHHHHHH
Q 005138 67 EMDAFKGRSQTTKGI-WMARCAGIEPCTLIMDL-------EGTDGR--------------------ERGEDDTAFEKQSA 118 (712)
Q Consensus 67 ~m~p~sG~~~~t~gi-~~~~~~~~~~~~~v~d~-------~g~~~~--------------------~r~~~~~~ferQrv 118 (712)
+|++|++...+.+ ......+..+...+.+. .+.... ......+.+|+||+
T Consensus 75 --~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv 152 (264)
T PRK13546 75 --SPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKL 152 (264)
T ss_pred --CCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHH
Confidence 8999986544321 11111111111111111 111110 01122345599999
Q ss_pred HHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEe
Q 005138 119 LFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (712)
Q Consensus 119 ~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~ 195 (712)
+||+|++ ++||||||+++||+.. ...+++.+.++.+ .|.|+|++||+++.+...|++++++.+ |++...
T Consensus 153 ~Laral~~~p~iLlLDEPt~gLD~~~------~~~l~~~L~~~~~-~g~tiIiisH~~~~i~~~~d~i~~l~~-G~i~~~ 224 (264)
T PRK13546 153 GFSINITVNPDILVIDEALSVGDQTF------AQKCLDKIYEFKE-QNKTIFFVSHNLGQVRQFCTKIAWIEG-GKLKDY 224 (264)
T ss_pred HHHHHHhhCCCEEEEeCccccCCHHH------HHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHcCEEEEEEC-CEEEEe
Confidence 9999999 9999999999999998 8999999998865 489999999999998888999998888 999988
Q ss_pred cCccccc
Q 005138 196 VPKPQAH 202 (712)
Q Consensus 196 g~~~e~~ 202 (712)
|+..+..
T Consensus 225 g~~~~~~ 231 (264)
T PRK13546 225 GELDDVL 231 (264)
T ss_pred CCHHHHH
Confidence 8765543
No 200
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.89 E-value=4.9e-23 Score=201.74 Aligned_cols=156 Identities=16% Similarity=0.101 Sum_probs=119.5
Q ss_pred EEEEeeeeeec--cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC--Ce-eec
Q 005138 10 TQLIDGDGTFN--VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--GI-WMA 84 (712)
Q Consensus 10 I~l~~l~k~y~--~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~--gi-~~~ 84 (712)
|++.++++.|. ..+++++++++..|+ +++|+||||||||||+++|+|+. +|++|++...+ .+ ++.
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge------~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~~~~~i~~~~ 70 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGD------RLLITGPSGTGKSSLFRALAGLW----PWGSGRIGMPEGEDLLFLP 70 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCC------EEEEECCCCCCHHHHHHHHhcCC----CCCCceEEECCCceEEEEC
Confidence 46889999994 357999999999999 99999999999999999999999 89999865432 11 111
Q ss_pred cccCCCccchhccccCCCcccccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCC
Q 005138 85 RCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP 161 (712)
Q Consensus 85 ~~~~~~~~~~v~d~~g~~~~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~ 161 (712)
...... ...+.+..... .....+..|+||+++|+|++ +++|+||||++||+.. ...+.+.+.++
T Consensus 71 q~~~~~-~~tv~~nl~~~---~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~------~~~l~~~l~~~--- 137 (166)
T cd03223 71 QRPYLP-LGTLREQLIYP---WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEES------EDRLYQLLKEL--- 137 (166)
T ss_pred CCCccc-cccHHHHhhcc---CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHH------HHHHHHHHHHh---
Confidence 111111 11222221110 23445778999999999999 9999999999999998 88898888875
Q ss_pred CCceEEEEecCCCCcccccccccceecCC
Q 005138 162 RKTTLMFVIRDKTRTPLENLEPVLREDIQ 190 (712)
Q Consensus 162 ~g~tiL~VtHDl~~~~~~~~~~~ll~~~G 190 (712)
+.|+|++|||++.. ..|++++++.+.|
T Consensus 138 -~~tiiivsh~~~~~-~~~d~i~~l~~~~ 164 (166)
T cd03223 138 -GITVISVGHRPSLW-KFHDRVLDLDGEG 164 (166)
T ss_pred -CCEEEEEeCChhHH-hhCCEEEEEcCCC
Confidence 58999999999765 5789988888744
No 201
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.2e-23 Score=215.60 Aligned_cols=176 Identities=15% Similarity=0.209 Sum_probs=130.4
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCC-----CCCeeeccCC-
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA-----FKGRSQTTKG- 80 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p-----~sG~~~~t~g- 80 (712)
.+|++.|+++.|. ..+++++++++..|+ +++|+|||||||||||++|+|+. +| ++|++...+.
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~i~~~i~~Ge------~~~i~G~nGsGKSTLl~~i~Gl~----~~~~~~~~~G~i~i~g~~ 71 (250)
T PRK14262 2 PIIEIENFSAYYGEKKAVKNVTMKIFKNQ------ITAIIGPSGCGKTTLLRSINRMN----DHIPGFRVEGKIYFKGQD 71 (250)
T ss_pred ceEEEEeeEEEeCCceeEeeeeEeecCCC------EEEEECCCCCCHHHHHHHHhccc----cCCCCCCcceEEEECCEE
Confidence 4799999999995 457999999999999 99999999999999999999998 53 7887432210
Q ss_pred e--------eeccccCC---Ccc---chhcc-------ccCCCc-------------------------ccccchhhHHH
Q 005138 81 I--------WMARCAGI---EPC---TLIMD-------LEGTDG-------------------------RERGEDDTAFE 114 (712)
Q Consensus 81 i--------~~~~~~~~---~~~---~~v~d-------~~g~~~-------------------------~~r~~~~~~fe 114 (712)
+ .....+++ .+. ..+.+ ..+... .......+..|
T Consensus 72 ~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq 151 (250)
T PRK14262 72 IYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQ 151 (250)
T ss_pred cccchhhHHHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHH
Confidence 0 00011110 000 01111 111100 00111223449
Q ss_pred HHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCe
Q 005138 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (712)
Q Consensus 115 rQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~ 191 (712)
+||+++|+|++ ++||+||||++||+.. ...+.+.+.++.+ +.|+|+||||++.+...|++++++.+ |+
T Consensus 152 ~qr~~la~al~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~~--~~tili~sH~~~~~~~~~d~i~~l~~-G~ 222 (250)
T PRK14262 152 QQRLCIARALAVEPEVILLDEPTSALDPIA------TQRIEKLLEELSE--NYTIVIVTHNIGQAIRIADYIAFMYR-GE 222 (250)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCHHH------HHHHHHHHHHHhc--CcEEEEEeCCHHHHHHhCCEEEEEEC-CE
Confidence 99999999999 9999999999999998 9999999999853 68999999999988888999999988 99
Q ss_pred EEEecCccccc
Q 005138 192 IWDSVPKPQAH 202 (712)
Q Consensus 192 I~~~g~~~e~~ 202 (712)
+...|++.+..
T Consensus 223 i~~~g~~~~~~ 233 (250)
T PRK14262 223 LIEYGPTREIV 233 (250)
T ss_pred EEEecCHHHHH
Confidence 99988876544
No 202
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.89 E-value=4.7e-23 Score=216.85 Aligned_cols=180 Identities=17% Similarity=0.161 Sum_probs=133.8
Q ss_pred CCcccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccC-----CCCCeeecc
Q 005138 5 EECCSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD-----AFKGRSQTT 78 (712)
Q Consensus 5 ~~~~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~-----p~sG~~~~t 78 (712)
.+..+|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. + |++|++...
T Consensus 16 ~~~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge------~~~I~G~nGsGKSTLl~~l~Gl~----~~~~~~~~~G~i~~~ 85 (267)
T PRK14237 16 EEEIALSTKDLHVYYGKKEAIKGIDMQFEKNK------ITALIGPSGSGKSTYLRSLNRMN----DTIDIARVTGQILYR 85 (267)
T ss_pred CCCeEEEEeeEEEEECCeeeEeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHHhcc----CccCCCCcceEEEEC
Confidence 3445799999999995 457999999999999 99999999999999999999998 5 468874322
Q ss_pred CC-ee--------eccccCC-------C------ccchhccccCCCc-------------------------ccccchhh
Q 005138 79 KG-IW--------MARCAGI-------E------PCTLIMDLEGTDG-------------------------RERGEDDT 111 (712)
Q Consensus 79 ~g-i~--------~~~~~~~-------~------~~~~v~d~~g~~~-------------------------~~r~~~~~ 111 (712)
+. +. ....+++ . +..+.....+... .......+
T Consensus 86 g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS 165 (267)
T PRK14237 86 GIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLS 165 (267)
T ss_pred CEEcccccCChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCC
Confidence 11 00 0001111 0 0000000011100 00112234
Q ss_pred HHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceec
Q 005138 112 AFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (712)
Q Consensus 112 ~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~ 188 (712)
..|+||++||+|++ ++|||||||++||+.. ...+.+++.++. + +.|||+|||+++.+...|++++++.+
T Consensus 166 ~G~~qrl~laral~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~ 237 (267)
T PRK14237 166 GGQQQRLCIARAIAVKPDILLMDEPASALDPIS------TMQLEETMFELK-K-NYTIIIVTHNMQQAARASDYTAFFYL 237 (267)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhcCEEEEEEC
Confidence 45999999999999 9999999999999998 999999999985 3 78999999999999888999999988
Q ss_pred CCeEEEecCcccccC
Q 005138 189 IQKIWDSVPKPQAHM 203 (712)
Q Consensus 189 ~G~I~~~g~~~e~~~ 203 (712)
|+++..|++.+.+.
T Consensus 238 -G~i~~~g~~~~~~~ 251 (267)
T PRK14237 238 -GDLIEYDKTRNIFT 251 (267)
T ss_pred -CEEEEeCCHHHHhc
Confidence 99999998776654
No 203
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=3.8e-23 Score=215.22 Aligned_cols=176 Identities=13% Similarity=0.139 Sum_probs=130.5
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccC-----CCCCeeeccC--
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD-----AFKGRSQTTK-- 79 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~-----p~sG~~~~t~-- 79 (712)
++|++.|+++.|+ ..++++++++++.|+ +++|+|+|||||||||++|+|+. + |++|++...+
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~----~~~p~~~~~G~v~i~g~~ 72 (251)
T PRK14251 3 NIISAKDVHLSYGNYEALHGISLDFEEKE------LTALIGPSGCGKSTFLRCLNRMN----DDIENIKITGEIKFEGQN 72 (251)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCC------EEEEECCCCCCHHHHHHHHhhcc----ccccCCCcceEEEECCEE
Confidence 4699999999995 457999999999999 99999999999999999999998 4 3688743211
Q ss_pred -------------Cee-eccccCCC------ccchhcccc-------------------CCCc------ccccchhhHHH
Q 005138 80 -------------GIW-MARCAGIE------PCTLIMDLE-------------------GTDG------RERGEDDTAFE 114 (712)
Q Consensus 80 -------------gi~-~~~~~~~~------~~~~v~d~~-------------------g~~~------~~r~~~~~~fe 114 (712)
++. +....... +..+..... |+.. .......+..|
T Consensus 73 ~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq 152 (251)
T PRK14251 73 IYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQ 152 (251)
T ss_pred cccccchHHHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHH
Confidence 110 00000000 000000000 1100 00112234459
Q ss_pred HHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCe
Q 005138 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (712)
Q Consensus 115 rQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~ 191 (712)
+||+++|+|++ +++|+|||+++||+.. ...+.+.+.++.+ +.|||+||||++.+...|++++++.+ |+
T Consensus 153 ~qr~~laral~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~~--~~tiiiisH~~~~~~~~~d~i~~l~~-G~ 223 (251)
T PRK14251 153 QQRICIARALAVRPKVVLLDEPTSALDPIS------SSEIEETLMELKH--QYTFIMVTHNLQQAGRISDQTAFLMN-GD 223 (251)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCccCCHHH------HHHHHHHHHHHHc--CCeEEEEECCHHHHHhhcCEEEEEEC-CE
Confidence 99999999999 9999999999999998 9999999999853 68999999999998888999999988 99
Q ss_pred EEEecCccccc
Q 005138 192 IWDSVPKPQAH 202 (712)
Q Consensus 192 I~~~g~~~e~~ 202 (712)
+...+++.+.+
T Consensus 224 i~~~~~~~~~~ 234 (251)
T PRK14251 224 LIEAGPTEEMF 234 (251)
T ss_pred EEEeCCHHHHH
Confidence 99988776554
No 204
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.89 E-value=4.6e-23 Score=211.41 Aligned_cols=172 Identities=19% Similarity=0.216 Sum_probs=128.2
Q ss_pred cEEEEeeeeeec-c-ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC-------
Q 005138 9 STQLIDGDGTFN-V-SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (712)
Q Consensus 9 ~I~l~~l~k~y~-~-~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~------- 79 (712)
.|++.|+++.|+ . .++++++++++.|+ +++|+|||||||||||++|+|+. +|++|++...+
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~------~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~ 71 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGE------TVAIVGPTGAGKTTLINLLMRFY----DPQKGQILIDGIDIRDIS 71 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCC------EEEEECCCCCCHHHHHHHHhcCc----CCCCCEEEECCEeHHHcC
Confidence 378999999995 2 47999999999999 99999999999999999999999 89999853221
Q ss_pred ------Ceee-ccccCCCccchhcccc-------------------CCCc-------------ccccchhhHHHHHHHHH
Q 005138 80 ------GIWM-ARCAGIEPCTLIMDLE-------------------GTDG-------------RERGEDDTAFEKQSALF 120 (712)
Q Consensus 80 ------gi~~-~~~~~~~~~~~v~d~~-------------------g~~~-------------~~r~~~~~~ferQrv~~ 120 (712)
++.+ .......+. .+.+.. ++.. .......+..|+||+++
T Consensus 72 ~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~l 150 (229)
T cd03254 72 RKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAI 150 (229)
T ss_pred HHHHhhhEEEecCCchhhhh-HHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHH
Confidence 1111 000000000 111110 0000 00012334569999999
Q ss_pred HHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecC
Q 005138 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (712)
Q Consensus 121 A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~ 197 (712)
|+|++ ++||+||||++||+.. .+.+++.+.++. + +.|||+|||+++.+.. |++++++.+ |++...++
T Consensus 151 a~al~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~-~-~~tii~~sh~~~~~~~-~d~i~~l~~-g~~~~~~~ 220 (229)
T cd03254 151 ARAMLRDPKILILDEATSNIDTET------EKLIQEALEKLM-K-GRTSIIIAHRLSTIKN-ADKILVLDD-GKIIEEGT 220 (229)
T ss_pred HHHHhcCCCEEEEeCccccCCHHH------HHHHHHHHHHhc-C-CCEEEEEecCHHHHhh-CCEEEEEeC-CeEEEeCC
Confidence 99999 9999999999999998 999999999984 4 8999999999988764 899998988 99988776
Q ss_pred cccc
Q 005138 198 KPQA 201 (712)
Q Consensus 198 ~~e~ 201 (712)
.++.
T Consensus 221 ~~~~ 224 (229)
T cd03254 221 HDEL 224 (229)
T ss_pred HHHH
Confidence 5443
No 205
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=2.8e-23 Score=215.77 Aligned_cols=178 Identities=9% Similarity=0.069 Sum_probs=131.5
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC-------
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~------- 79 (712)
|++++.|+++.|+ ..+++++++++..|+ +++|+||||||||||+|+|+|+.- ..+|++|++...+
T Consensus 1 ~~~~~~~l~~~~~~~~~l~~isl~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~~-~~~~~~G~i~~~g~~i~~~~ 73 (246)
T PRK14269 1 MIAKTTNLNLFYGKKQALFDINMQIEQNK------ITALIGASGCGKSTFLRCFNRMND-KIAKIDGLVEIEGKDVKNQD 73 (246)
T ss_pred CceeeeeeEEEECCEeeeeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHhcccC-CCCCCceEEEECCEecccCC
Confidence 3689999999995 357999999999999 999999999999999999999861 0025788743211
Q ss_pred ------Cee-eccccCCCccchhcc---------------------------ccCCCc------ccccchhhHHHHHHHH
Q 005138 80 ------GIW-MARCAGIEPCTLIMD---------------------------LEGTDG------RERGEDDTAFEKQSAL 119 (712)
Q Consensus 80 ------gi~-~~~~~~~~~~~~v~d---------------------------~~g~~~------~~r~~~~~~ferQrv~ 119 (712)
++. +.......+. .+.+ ..|+.. .......+..|+||++
T Consensus 74 ~~~~~~~i~~~~q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 152 (246)
T PRK14269 74 VVALRKNVGMVFQQPNVFVK-SIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLC 152 (246)
T ss_pred HHHHhhhEEEEecCCccccc-cHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHH
Confidence 010 0000000000 1111 111110 0011223455999999
Q ss_pred HHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEec
Q 005138 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 120 ~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g 196 (712)
+|+|++ +++|+||||++||+.. ...+.+.+.++. + ++|+|+|||+++.+...|++++++.+ |+++..|
T Consensus 153 laral~~~p~lllLDEP~~~LD~~~------~~~l~~~l~~~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~-G~i~~~g 223 (246)
T PRK14269 153 IARALAIKPKLLLLDEPTSALDPIS------SGVIEELLKELS-H-NLSMIMVTHNMQQGKRVADYTAFFHL-GELIEFG 223 (246)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHh-C-CCEEEEEecCHHHHHhhCcEEEEEEC-CEEEEEC
Confidence 999999 9999999999999998 999999999985 3 89999999999998888999999988 9999988
Q ss_pred Cccccc
Q 005138 197 PKPQAH 202 (712)
Q Consensus 197 ~~~e~~ 202 (712)
++.+.+
T Consensus 224 ~~~~~~ 229 (246)
T PRK14269 224 ESKEFF 229 (246)
T ss_pred CHHHHH
Confidence 876554
No 206
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.89 E-value=4.4e-23 Score=214.79 Aligned_cols=177 Identities=16% Similarity=0.185 Sum_probs=131.8
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCC-----CCeeeccCC-
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAF-----KGRSQTTKG- 80 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~-----sG~~~~t~g- 80 (712)
++|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|+ +|++...+.
T Consensus 3 ~~l~~~~l~~~~~~~~il~~~s~~i~~G~------~~~i~G~nGsGKSTLl~~l~Gl~----~~~~~~~~~G~v~~~g~~ 72 (251)
T PRK14249 3 PKIKIRGVNFFYHKHQVLKNINMDFPERQ------ITAIIGPSGCGKSTLLRALNRMN----DIVSGARLEGAVLLDNEN 72 (251)
T ss_pred ceEEEEEEEEEECCeeEecceEEEEcCCC------EEEEECCCCCCHHHHHHHHhccc----CccccCCcccEEEECCEE
Confidence 4699999999995 357999999999999 99999999999999999999998 676 476432111
Q ss_pred e--------eeccccCC-------Cccchhccc-------cCCCc-------------------------ccccchhhHH
Q 005138 81 I--------WMARCAGI-------EPCTLIMDL-------EGTDG-------------------------RERGEDDTAF 113 (712)
Q Consensus 81 i--------~~~~~~~~-------~~~~~v~d~-------~g~~~-------------------------~~r~~~~~~f 113 (712)
+ .....+++ .+. .+.+. .+... .......+..
T Consensus 73 ~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G 151 (251)
T PRK14249 73 IYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGG 151 (251)
T ss_pred ccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHH
Confidence 0 00011110 010 11110 01100 0011123345
Q ss_pred HHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCC
Q 005138 114 EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ 190 (712)
Q Consensus 114 erQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G 190 (712)
|+||+++|+|++ ++|||||||++||+.. ...+.+++.++. + +.|||+||||++.+...|++++++.+ |
T Consensus 152 q~qrv~laral~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~-~-~~tilivsh~~~~~~~~~d~i~~l~~-G 222 (251)
T PRK14249 152 QQQRLCIARVLAIEPEVILMDEPCSALDPVS------TMRIEELMQELK-Q-NYTIAIVTHNMQQAARASDWTGFLLT-G 222 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHh-c-CCEEEEEeCCHHHHHhhCCEEEEEeC-C
Confidence 999999999999 9999999999999998 899999999884 3 79999999999999888999999988 9
Q ss_pred eEEEecCcccccCC
Q 005138 191 KIWDSVPKPQAHME 204 (712)
Q Consensus 191 ~I~~~g~~~e~~~~ 204 (712)
++...|++.+.+..
T Consensus 223 ~i~~~~~~~~~~~~ 236 (251)
T PRK14249 223 DLVEYGRTGEIFSR 236 (251)
T ss_pred eEEEeCCHHHHHhC
Confidence 99999887766543
No 207
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.89 E-value=4.9e-23 Score=212.61 Aligned_cols=171 Identities=15% Similarity=0.125 Sum_probs=127.7
Q ss_pred EEEEeeeeeecc----ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC------
Q 005138 10 TQLIDGDGTFNV----SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------ 79 (712)
Q Consensus 10 I~l~~l~k~y~~----~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~------ 79 (712)
|++.|+++.|+. .++++++|+++.|+ +++|+|||||||||||++|+|+. +|++|++...+
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge------~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~i~~~g~~~~~~ 70 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGK------TVALVGSSGCGKSTVVSLLERFY----DPTSGEILLDGVDIRDL 70 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCC------EEEEEeCCCCCHHHHHHHHhccC----CCCCCEEEECCEehhhc
Confidence 468999999942 37999999999999 99999999999999999999998 89999853221
Q ss_pred -------Ceee-ccccCCCccchhcccc-------------------CCCc-------------ccccchhhHHHHHHHH
Q 005138 80 -------GIWM-ARCAGIEPCTLIMDLE-------------------GTDG-------------RERGEDDTAFEKQSAL 119 (712)
Q Consensus 80 -------gi~~-~~~~~~~~~~~v~d~~-------------------g~~~-------------~~r~~~~~~ferQrv~ 119 (712)
.+.+ .......+ ..+.+.. +... .......+..|+||+.
T Consensus 71 ~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 149 (238)
T cd03249 71 NLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIA 149 (238)
T ss_pred CHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHH
Confidence 0110 00000000 0111110 0000 0001223556999999
Q ss_pred HHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEec
Q 005138 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 120 ~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g 196 (712)
+|+|++ ++||+||||++||+.. +..+.+.+.++. .|.|+|++|||++.+. .|++++++.+ |++...+
T Consensus 150 la~al~~~p~llllDEP~~gLD~~~------~~~l~~~l~~~~--~g~~vi~~sh~~~~~~-~~d~v~~l~~-G~i~~~~ 219 (238)
T cd03249 150 IARALLRNPKILLLDEATSALDAES------EKLVQEALDRAM--KGRTTIVIAHRLSTIR-NADLIAVLQN-GQVVEQG 219 (238)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHH------HHHHHHHHHHhc--CCCEEEEEeCCHHHHh-hCCEEEEEEC-CEEEEeC
Confidence 999999 9999999999999998 999999999885 4899999999998887 6999999988 9999888
Q ss_pred Ccccc
Q 005138 197 PKPQA 201 (712)
Q Consensus 197 ~~~e~ 201 (712)
+..+.
T Consensus 220 ~~~~~ 224 (238)
T cd03249 220 THDEL 224 (238)
T ss_pred CHHHH
Confidence 75544
No 208
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.89 E-value=6.5e-23 Score=208.72 Aligned_cols=163 Identities=14% Similarity=0.087 Sum_probs=121.6
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC------
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------ 80 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g------ 80 (712)
.+|++.|+++.|+ ..++++++++++.|+ +++|+||||||||||+++|+|+. +|++|++...+.
T Consensus 10 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge------~~~i~G~nGsGKSTLl~~i~G~~----~~~~G~i~~~g~~i~~~~ 79 (214)
T PRK13543 10 PLLAAHALAFSRNEEPVFGPLDFHVDAGE------ALLVQGDNGAGKTTLLRVLAGLL----HVESGQIQIDGKTATRGD 79 (214)
T ss_pred ceEEEeeEEEecCCceeeecceEEECCCC------EEEEEcCCCCCHHHHHHHHhCCC----CCCCeeEEECCEEccchh
Confidence 4799999999995 457999999999999 99999999999999999999999 899998533221
Q ss_pred ----e-eeccccCCCccchhccc-------cC---------------CCc--ccccchhhHHHHHHHHHHHHHH---HHh
Q 005138 81 ----I-WMARCAGIEPCTLIMDL-------EG---------------TDG--RERGEDDTAFEKQSALFALAVS---DIV 128 (712)
Q Consensus 81 ----i-~~~~~~~~~~~~~v~d~-------~g---------------~~~--~~r~~~~~~ferQrv~~A~Ala---~iL 128 (712)
+ ++.......+...+.+. .+ +.. .......+..|+||+++|++++ +++
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 159 (214)
T PRK13543 80 RSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLW 159 (214)
T ss_pred hhhceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 1 11111111111111111 01 100 0011122344999999999999 999
Q ss_pred hhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccccccccee
Q 005138 129 LINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRE 187 (712)
Q Consensus 129 lLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~ 187 (712)
|+||||++||+.. .+.+.+.+.++.++ |.|+|++|||++.+...|++++++.
T Consensus 160 llDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~~~~~i~~l~ 211 (214)
T PRK13543 160 LLDEPYANLDLEG------ITLVNRMISAHLRG-GGAALVTTHGAYAAPPVRTRMLTLE 211 (214)
T ss_pred EEeCCcccCCHHH------HHHHHHHHHHHHhC-CCEEEEEecChhhhhhhcceEEEEe
Confidence 9999999999998 99999999988764 8999999999999998898877664
No 209
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.89 E-value=3.3e-23 Score=237.52 Aligned_cols=177 Identities=18% Similarity=0.210 Sum_probs=136.1
Q ss_pred ccEEEEeeeeeec------cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeecc-CC
Q 005138 8 CSTQLIDGDGTFN------VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT-KG 80 (712)
Q Consensus 8 ~~I~l~~l~k~y~------~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t-~g 80 (712)
.+|++.|+++.|+ ..++++++|++..|+ +++|+|||||||||||++|+|+. +|++|++... ++
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge------~~~l~G~NGsGKSTLl~~l~Gl~----~p~~G~i~~~~g~ 347 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGE------IFGIVGTSGAGKTTLSKIIAGVL----EPTSGEVNVRVGD 347 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEEecCC
Confidence 4799999999993 247999999999999 99999999999999999999999 8999986542 21
Q ss_pred ee-------------eccccCC-------Cccchhc------------------------cccCCCc-------ccccch
Q 005138 81 IW-------------MARCAGI-------EPCTLIM------------------------DLEGTDG-------RERGED 109 (712)
Q Consensus 81 i~-------------~~~~~~~-------~~~~~v~------------------------d~~g~~~-------~~r~~~ 109 (712)
.+ ....+++ .+...+. +..|+.. ......
T Consensus 348 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 427 (520)
T TIGR03269 348 EWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDE 427 (520)
T ss_pred ccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhh
Confidence 00 0011111 1111111 1112221 111233
Q ss_pred hhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccce
Q 005138 110 DTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLR 186 (712)
Q Consensus 110 ~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll 186 (712)
.+..||||++||+|++ ++||+||||++||+.. ...+.+.+.++.++.|.|||+||||++.+..+|++++++
T Consensus 428 LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~------~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l 501 (520)
T TIGR03269 428 LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPIT------KVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALM 501 (520)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEE
Confidence 4556999999999999 9999999999999999 999999999987656899999999999998899999999
Q ss_pred ecCCeEEEecCcccc
Q 005138 187 EDIQKIWDSVPKPQA 201 (712)
Q Consensus 187 ~~~G~I~~~g~~~e~ 201 (712)
.+ |+++..|++.++
T Consensus 502 ~~-G~i~~~g~~~~~ 515 (520)
T TIGR03269 502 RD-GKIVKIGDPEEI 515 (520)
T ss_pred EC-CEEEEECCHHHH
Confidence 88 999988876554
No 210
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=5e-23 Score=214.28 Aligned_cols=176 Identities=19% Similarity=0.207 Sum_probs=131.0
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCC-----CCeeeccCC-e
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAF-----KGRSQTTKG-I 81 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~-----sG~~~~t~g-i 81 (712)
+|++.|+++.|+ ..+++++++++..|+ +++|+||||||||||+|+|+|+. +|. +|++...+. +
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge------~~~i~G~nGsGKSTLl~~i~G~~----~~~~~~~~~G~i~~~g~~~ 73 (252)
T PRK14272 4 LLSAQDVNIYYGDKQAVKNVNLDVQRGT------VNALIGPSGCGKTTFLRAINRMH----DLTPGARVTGRILLDGQDI 73 (252)
T ss_pred EEEEeeeEEEECCEEeeccceEEEcCCC------EEEEECCCCCCHHHHHHHHhccC----CCCcCCCCceeEEECCEEc
Confidence 689999999995 457999999999999 99999999999999999999998 553 686432210 0
Q ss_pred --------eeccccC-------CCccchhcc-------ccCCCcc-------------------------cccchhhHHH
Q 005138 82 --------WMARCAG-------IEPCTLIMD-------LEGTDGR-------------------------ERGEDDTAFE 114 (712)
Q Consensus 82 --------~~~~~~~-------~~~~~~v~d-------~~g~~~~-------------------------~r~~~~~~fe 114 (712)
.+...++ ..+...+.+ ..+.... ......+..|
T Consensus 74 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~ 153 (252)
T PRK14272 74 YGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQ 153 (252)
T ss_pred ccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHH
Confidence 0000111 111101111 0111000 0011233459
Q ss_pred HHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCe
Q 005138 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (712)
Q Consensus 115 rQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~ 191 (712)
+||++||+|++ ++||+|||+++||+.. ...+.+.++++. + ++|+|++||+++.+...|++++++.+ |+
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~-G~ 224 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPAS------TARIEDLMTDLK-K-VTTIIIVTHNMHQAARVSDTTSFFLV-GD 224 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEEC-CE
Confidence 99999999999 9999999999999998 999999999985 3 69999999999998888999999988 99
Q ss_pred EEEecCcccccC
Q 005138 192 IWDSVPKPQAHM 203 (712)
Q Consensus 192 I~~~g~~~e~~~ 203 (712)
++..|++++.+.
T Consensus 225 i~~~~~~~~~~~ 236 (252)
T PRK14272 225 LVEHGPTDQLFT 236 (252)
T ss_pred EEEeCCHHHHHh
Confidence 999988766543
No 211
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.88 E-value=3.8e-23 Score=232.10 Aligned_cols=177 Identities=17% Similarity=0.109 Sum_probs=134.0
Q ss_pred ccEEEEeeeeeecc----ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCe-e
Q 005138 8 CSTQLIDGDGTFNV----SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGI-W 82 (712)
Q Consensus 8 ~~I~l~~l~k~y~~----~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi-~ 82 (712)
.++.+.|+++.|.. .+|++++|++..|+ +++|+|||||||||||++|+|+. +|++|++...+.. .
T Consensus 20 ~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GE------ivgIiGpNGSGKSTLLkiLaGLl----~P~sGeI~I~G~~~~ 89 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEYHYALNNISFEVPEGE------IVGIIGLNGSGKSTLSNLIAGVT----MPNKGTVDIKGSAAL 89 (549)
T ss_pred ceeEEEEEEEecCCCccceEEeeeEEEEeCCC------EEEEEcCCCCCHHHHHHHHhCCC----CCCceEEEECCEeee
Confidence 36888888888843 36899999999999 99999999999999999999999 8999986443211 1
Q ss_pred eccccCCCccchhcc-------------------------ccCCCc--ccccchhhHHHHHHHHHHHHHH---HHhhhcc
Q 005138 83 MARCAGIEPCTLIMD-------------------------LEGTDG--RERGEDDTAFEKQSALFALAVS---DIVLINM 132 (712)
Q Consensus 83 ~~~~~~~~~~~~v~d-------------------------~~g~~~--~~r~~~~~~ferQrv~~A~Ala---~iLlLDE 132 (712)
.....+..+...+.+ ..|+.. .......+.+|+||++||+|++ ++|||||
T Consensus 90 i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDE 169 (549)
T PRK13545 90 IAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDE 169 (549)
T ss_pred EEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 111111111111111 111111 0111233455999999999999 9999999
Q ss_pred ccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCccccc
Q 005138 133 WCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (712)
Q Consensus 133 P~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~ 202 (712)
||++||+.. ...+++.+.++.+ .|.|||+||||++.+...|++++++.+ |++...|++.++.
T Consensus 170 PTsgLD~~s------r~~LlelL~el~~-~G~TIIIVSHdl~~i~~l~DrIivL~~-GkIv~~G~~~el~ 231 (549)
T PRK13545 170 ALSVGDQTF------TKKCLDKMNEFKE-QGKTIFFISHSLSQVKSFCTKALWLHY-GQVKEYGDIKEVV 231 (549)
T ss_pred CcccCCHHH------HHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEEC-CEEEEECCHHHHH
Confidence 999999998 9999999999865 489999999999999888999999988 9999998876654
No 212
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=5.6e-23 Score=216.27 Aligned_cols=175 Identities=17% Similarity=0.186 Sum_probs=131.5
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCC-----CCCeeeccCC-
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA-----FKGRSQTTKG- 80 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p-----~sG~~~~t~g- 80 (712)
.+|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +| ++|++...+.
T Consensus 18 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~----~~~~~~~~~G~I~~~g~~ 87 (267)
T PRK14235 18 IKMRARDVSVFYGEKQALFDVDLDIPEKT------VTAFIGPSGCGKSTFLRCLNRMN----DTIDGCRVTGKITLDGED 87 (267)
T ss_pred ceEEEEeEEEEECCEEEEEEEEEEEcCCC------EEEEECCCCCCHHHHHHHHHhhc----ccccCCCCceEEEECCEE
Confidence 4799999999995 347999999999999 99999999999999999999998 54 7887432210
Q ss_pred e--------eeccccCC-------Cccchhcc---------------------------ccCCCc------ccccchhhH
Q 005138 81 I--------WMARCAGI-------EPCTLIMD---------------------------LEGTDG------RERGEDDTA 112 (712)
Q Consensus 81 i--------~~~~~~~~-------~~~~~v~d---------------------------~~g~~~------~~r~~~~~~ 112 (712)
+ .+...+++ .+. .+.+ ..|+.. .......+.
T Consensus 88 i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg 166 (267)
T PRK14235 88 IYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSG 166 (267)
T ss_pred CcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCH
Confidence 0 00011111 010 1111 001110 001122344
Q ss_pred HHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecC
Q 005138 113 FEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDI 189 (712)
Q Consensus 113 ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~ 189 (712)
.|+||++||+|++ ++|||||||++||+.. ...+.+++.++.+ +.|||+||||++.+...|++++++.+
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~------~~~l~~~L~~l~~--~~tiiivtH~~~~~~~~~d~v~~l~~- 237 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIA------TAKVEELIDELRQ--NYTIVIVTHSMQQAARVSQRTAFFHL- 237 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHH------HHHHHHHHHHHhc--CCeEEEEEcCHHHHHhhCCEEEEEEC-
Confidence 5999999999999 9999999999999998 9999999999853 68999999999999888999999988
Q ss_pred CeEEEecCccccc
Q 005138 190 QKIWDSVPKPQAH 202 (712)
Q Consensus 190 G~I~~~g~~~e~~ 202 (712)
|++...|++.+.+
T Consensus 238 G~i~~~g~~~~~~ 250 (267)
T PRK14235 238 GNLVEVGDTEKMF 250 (267)
T ss_pred CEEEEeCCHHHHH
Confidence 9999988776554
No 213
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=6.9e-23 Score=206.89 Aligned_cols=171 Identities=13% Similarity=0.028 Sum_probs=125.6
Q ss_pred cEEEEeeeeeecc-----ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccC---CCCCeeeccCC
Q 005138 9 STQLIDGDGTFNV-----SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD---AFKGRSQTTKG 80 (712)
Q Consensus 9 ~I~l~~l~k~y~~-----~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~---p~sG~~~~t~g 80 (712)
.+.++|+++.|.. .+++++++++..|+ +++|+|||||||||||++|+|+. + |++|++...+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge------~~~i~G~nGsGKSTLl~~l~G~~----~~~~~~~G~i~i~g~ 72 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGE------MVLVLGRPGSGCSTLLKALANRT----EGNVSVEGDIHYNGI 72 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCc------EEEEECCCCCCHHHHHHHhcccC----CCCCCcceEEEECCE
Confidence 4789999999942 36899999999999 99999999999999999999998 7 78897432211
Q ss_pred -ee-----eccccC-------CCccchhccccCCC----cccccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchh
Q 005138 81 -IW-----MARCAG-------IEPCTLIMDLEGTD----GRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGRE 140 (712)
Q Consensus 81 -i~-----~~~~~~-------~~~~~~v~d~~g~~----~~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~ 140 (712)
+. ....++ ..+...+.+..... ........+..|+||+++|+|++ ++||+||||++||+.
T Consensus 73 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~ 152 (202)
T cd03233 73 PYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSS 152 (202)
T ss_pred ECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHH
Confidence 00 001111 11111222221110 11222345667999999999999 999999999999999
Q ss_pred hhhChhhHHHHHHHHHHhhCCCCceEEEEec-CCCCcccccccccceecCCeEEEec
Q 005138 141 QAANKPLLKTVFQVMMRLFSPRKTTLMFVIR-DKTRTPLENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 141 ~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtH-Dl~~~~~~~~~~~ll~~~G~I~~~g 196 (712)
. ++.+.+++.++.++.+.|+|+++| +.+.+...|++++++.+ |+++..|
T Consensus 153 ~------~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~g 202 (202)
T cd03233 153 T------ALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYYG 202 (202)
T ss_pred H------HHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEecC
Confidence 8 999999999987654667666654 55788888999999988 9987643
No 214
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=6.4e-23 Score=213.87 Aligned_cols=176 Identities=15% Similarity=0.172 Sum_probs=129.7
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccC--C---CCCeeeccCC-
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD--A---FKGRSQTTKG- 80 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~--p---~sG~~~~t~g- 80 (712)
++|++.|+++.|+ ..+++++++++..|+ +++|+||||||||||+++|+|+. + | ++|++...+.
T Consensus 5 ~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~----~~~~~~~~~G~i~~~g~~ 74 (253)
T PRK14261 5 IILSTKNLNLWYGEKHALYDITISIPKNR------VTALIGPSGCGKSTLLRCFNRMN----DLIPGCRITGDILYNGEN 74 (253)
T ss_pred ceEEEeeeEEEECCeeeeeeeEEEECCCc------EEEEECCCCCCHHHHHHHHhccc----cCCCCCCcceEEEECCEE
Confidence 4799999999995 457999999999999 99999999999999999999986 3 2 4787432110
Q ss_pred e--------eeccccCC---Cccc---hhccc-------cCCCc-------------------------ccccchhhHHH
Q 005138 81 I--------WMARCAGI---EPCT---LIMDL-------EGTDG-------------------------RERGEDDTAFE 114 (712)
Q Consensus 81 i--------~~~~~~~~---~~~~---~v~d~-------~g~~~-------------------------~~r~~~~~~fe 114 (712)
+ .....+++ .+.. .+.+. .+... .......+..|
T Consensus 75 ~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~ 154 (253)
T PRK14261 75 IMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQ 154 (253)
T ss_pred ccccccchhhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHH
Confidence 0 00000110 0000 11110 01000 00111233459
Q ss_pred HHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCe
Q 005138 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (712)
Q Consensus 115 rQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~ 191 (712)
+||++||+|++ +++|+||||++||+.. ...+.+++.++.+ +.|+|++||+++.+...|++++++.+ |+
T Consensus 155 ~qrv~laral~~~p~lllLDEP~~gLD~~~------~~~l~~~l~~~~~--~~tvii~sh~~~~~~~~~d~v~~l~~-G~ 225 (253)
T PRK14261 155 QQRLCIARTLAVNPEVILMDEPCSALDPIA------TAKIEDLIEDLKK--EYTVIIVTHNMQQAARVSDYTGFMYL-GK 225 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHhh--CceEEEEEcCHHHHHhhCCEEEEEEC-CE
Confidence 99999999999 9999999999999998 9999999999864 58999999999998888999999988 99
Q ss_pred EEEecCccccc
Q 005138 192 IWDSVPKPQAH 202 (712)
Q Consensus 192 I~~~g~~~e~~ 202 (712)
++..|++.+..
T Consensus 226 i~~~g~~~~~~ 236 (253)
T PRK14261 226 LIEFDKTTQIF 236 (253)
T ss_pred EEEcCCHHHHH
Confidence 99988876554
No 215
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=5.7e-23 Score=216.69 Aligned_cols=177 Identities=13% Similarity=0.172 Sum_probs=131.9
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccC-----CCCCeeeccCC-
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD-----AFKGRSQTTKG- 80 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~-----p~sG~~~~t~g- 80 (712)
++|++.|+++.|+ ..+++++++++..|+ +++|+|+|||||||||++|+|+. + |++|++...+.
T Consensus 23 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge------~~~I~G~nGsGKSTLl~~i~Gl~----~~~~~~~~~G~i~~~g~~ 92 (271)
T PRK14238 23 VVFDTQNLNLWYGEDHALKNINLDIHENE------VTAIIGPSGCGKSTYIKTLNRMV----ELVPSVKTTGKILYRDQN 92 (271)
T ss_pred eEEEEeeeEEEECCcceeeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHHhhc----cCCCCCCCceeEEECCEE
Confidence 4799999999995 457999999999999 99999999999999999999998 5 58887532211
Q ss_pred ee--------eccccCC---Ccc---chhccc-------cCCCcc-------------------------cccchhhHHH
Q 005138 81 IW--------MARCAGI---EPC---TLIMDL-------EGTDGR-------------------------ERGEDDTAFE 114 (712)
Q Consensus 81 i~--------~~~~~~~---~~~---~~v~d~-------~g~~~~-------------------------~r~~~~~~fe 114 (712)
+. +...+++ .+. ..+.+. .+.... ......+..|
T Consensus 93 ~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe 172 (271)
T PRK14238 93 IFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQ 172 (271)
T ss_pred cccccccHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHH
Confidence 00 0011111 000 011110 011000 0011223459
Q ss_pred HHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCe
Q 005138 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (712)
Q Consensus 115 rQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~ 191 (712)
+||++||++++ ++||+||||++||+.. ...+.+++.++.+ +.|+|+||||++.+...|++++++.+ |+
T Consensus 173 ~qrv~laraL~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~--~~tiiivsH~~~~i~~~~d~i~~l~~-G~ 243 (271)
T PRK14238 173 QQRLCIARCLAIEPDVILMDEPTSALDPIS------TLKVEELVQELKK--DYSIIIVTHNMQQAARISDKTAFFLN-GY 243 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHH------HHHHHHHHHHHHc--CCEEEEEEcCHHHHHHhCCEEEEEEC-CE
Confidence 99999999999 9999999999999998 9999999999853 68999999999998888999999988 99
Q ss_pred EEEecCcccccC
Q 005138 192 IWDSVPKPQAHM 203 (712)
Q Consensus 192 I~~~g~~~e~~~ 203 (712)
++..|++.+.+.
T Consensus 244 i~~~g~~~~~~~ 255 (271)
T PRK14238 244 VNEYDDTDKIFS 255 (271)
T ss_pred EEEeCCHHHHHc
Confidence 999988766543
No 216
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.88 E-value=1.2e-22 Score=211.45 Aligned_cols=175 Identities=15% Similarity=0.165 Sum_probs=129.3
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC--------
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~-------- 79 (712)
+|++.++++.|+ ..+++++++++..|+ +++|+|+||||||||+++|+|+.. .+|++|++...+
T Consensus 7 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge------~~~i~G~nGsGKSTLl~~i~Gl~~--~~~~~G~i~~~g~~~~~~~~ 78 (252)
T CHL00131 7 ILEIKNLHASVNENEILKGLNLSINKGE------IHAIMGPNGSGKSTLSKVIAGHPA--YKILEGDILFKGESILDLEP 78 (252)
T ss_pred eEEEEeEEEEeCCEEeeecceeEEcCCc------EEEEECCCCCCHHHHHHHHcCCCc--CcCCCceEEECCEEcccCCh
Confidence 699999999995 457999999999999 999999999999999999999720 158889743211
Q ss_pred ------Ceee-ccccCCCccchh--------------------------------ccccCCCc---ccccc-hhhHHHHH
Q 005138 80 ------GIWM-ARCAGIEPCTLI--------------------------------MDLEGTDG---RERGE-DDTAFEKQ 116 (712)
Q Consensus 80 ------gi~~-~~~~~~~~~~~v--------------------------------~d~~g~~~---~~r~~-~~~~ferQ 116 (712)
++.+ .......+...+ ++..|+.. ..... ..+..|+|
T Consensus 79 ~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~q 158 (252)
T CHL00131 79 EERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKK 158 (252)
T ss_pred hhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHH
Confidence 1111 000000000000 01112211 01111 24567999
Q ss_pred HHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccc-cccccceecCCeE
Q 005138 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE-NLEPVLREDIQKI 192 (712)
Q Consensus 117 rv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~-~~~~~ll~~~G~I 192 (712)
|+++|+|++ +++|+||||++||+.. ...+.+++.++.+ .|.|||++|||++.+... |++++++.+ |++
T Consensus 159 rv~la~al~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~-~g~tii~~tH~~~~~~~~~~d~i~~l~~-G~i 230 (252)
T CHL00131 159 RNEILQMALLDSELAILDETDSGLDIDA------LKIIAEGINKLMT-SENSIILITHYQRLLDYIKPDYVHVMQN-GKI 230 (252)
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHh-CCCEEEEEecCHHHHHhhhCCEEEEEeC-CEE
Confidence 999999999 9999999999999998 9999999999875 489999999999887765 788888888 999
Q ss_pred EEecCcc
Q 005138 193 WDSVPKP 199 (712)
Q Consensus 193 ~~~g~~~ 199 (712)
+..|++.
T Consensus 231 ~~~~~~~ 237 (252)
T CHL00131 231 IKTGDAE 237 (252)
T ss_pred EEecChh
Confidence 9988764
No 217
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.88 E-value=4.6e-23 Score=212.19 Aligned_cols=161 Identities=16% Similarity=0.161 Sum_probs=119.4
Q ss_pred ccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC---------eeeccccCCCccch
Q 005138 24 IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG---------IWMARCAGIEPCTL 94 (712)
Q Consensus 24 L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g---------i~~~~~~~~~~~~~ 94 (712)
++++++++..|+ +++|+||||||||||+++|+|+. +|++|++...+. .++.......+...
T Consensus 1 l~~is~~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~t 70 (230)
T TIGR01184 1 LKGVNLTIQQGE------FISLIGHSGCGKSTLLNLISGLA----QPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLT 70 (230)
T ss_pred CCceeEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEECCCCChhheEEecCcccCCCCC
Confidence 468999999999 99999999999999999999999 899998543211 11111111111111
Q ss_pred hcccc---------CCCcc--------------------cccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhh
Q 005138 95 IMDLE---------GTDGR--------------------ERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQA 142 (712)
Q Consensus 95 v~d~~---------g~~~~--------------------~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~ 142 (712)
+.+.. +.... ......+..|+||++||+|++ ++||+||||++||+..
T Consensus 71 v~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~- 149 (230)
T TIGR01184 71 VRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALT- 149 (230)
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHH-
Confidence 11110 11000 011122344999999999999 9999999999999998
Q ss_pred hChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccc
Q 005138 143 ANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (712)
Q Consensus 143 a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~ 201 (712)
.+.+.+.+.++.++.|+|+|+||||++.+...|++++++.+ |+++..|+..++
T Consensus 150 -----~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~-G~i~~~~~~~~~ 202 (230)
T TIGR01184 150 -----RGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTN-GPAANIGQILEV 202 (230)
T ss_pred -----HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeC-CcEecccCceec
Confidence 99999999998765589999999999998888999999988 999988765443
No 218
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.88 E-value=6.7e-23 Score=223.99 Aligned_cols=173 Identities=17% Similarity=0.221 Sum_probs=135.8
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-eeec-
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IWMA- 84 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~~~- 84 (712)
+.+++.+++|.|+ ..+.++|++++..|+ |.+|+|.||||||||+++|+|+. .|++|++...+. +.+.
T Consensus 3 ~~l~~~~itK~f~~~~And~V~l~v~~Ge------IHaLLGENGAGKSTLm~iL~G~~----~P~~GeI~v~G~~v~~~s 72 (501)
T COG3845 3 PALEMRGITKRFPGVVANDDVSLSVKKGE------IHALLGENGAGKSTLMKILFGLY----QPDSGEIRVDGKEVRIKS 72 (501)
T ss_pred ceEEEeccEEEcCCEEecCceeeeecCCc------EEEEeccCCCCHHHHHHHHhCcc----cCCcceEEECCEEeccCC
Confidence 5799999999995 457899999999999 99999999999999999999999 999999654332 1111
Q ss_pred ------cccC-------CCccchhcccc--CC----------------------------CcccccchhhHHHHHHHHHH
Q 005138 85 ------RCAG-------IEPCTLIMDLE--GT----------------------------DGRERGEDDTAFEKQSALFA 121 (712)
Q Consensus 85 ------~~~~-------~~~~~~v~d~~--g~----------------------------~~~~r~~~~~~ferQrv~~A 121 (712)
..+| ..+.++|.++. |. ++.....+....||||+.|-
T Consensus 73 P~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIl 152 (501)
T COG3845 73 PRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEIL 152 (501)
T ss_pred HHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHH
Confidence 0111 11222222211 11 11112223333499999999
Q ss_pred HHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCc
Q 005138 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (712)
Q Consensus 122 ~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~ 198 (712)
.+|. ++|||||||+-|-|.. .+.+|+.++++.++ |+||||+||.+.++..+||+++++.. |+++....+
T Consensus 153 KaLyr~a~iLILDEPTaVLTP~E------~~~lf~~l~~l~~~-G~tIi~ITHKL~Ev~~iaDrvTVLR~-Gkvvgt~~~ 224 (501)
T COG3845 153 KALYRGARLLILDEPTAVLTPQE------ADELFEILRRLAAE-GKTIIFITHKLKEVMAIADRVTVLRR-GKVVGTVDP 224 (501)
T ss_pred HHHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHHC-CCEEEEEeccHHHHHHhhCeeEEEeC-CeEEeeecC
Confidence 9999 9999999999999988 99999999999876 99999999999999999999999999 999877764
No 219
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.88 E-value=3.9e-23 Score=209.33 Aligned_cols=162 Identities=19% Similarity=0.173 Sum_probs=128.9
Q ss_pred cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee--eccccCC-------Cccc
Q 005138 23 GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW--MARCAGI-------EPCT 93 (712)
Q Consensus 23 ~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~--~~~~~~~-------~~~~ 93 (712)
+|+||+|++..|+ .+||+|+||||||||||+|+|.. +|++|++..++.+. +.-..|+ +|..
T Consensus 42 aL~disf~i~~Ge------~vGiiG~NGaGKSTLlkliaGi~----~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~ 111 (249)
T COG1134 42 ALKDISFEIYKGE------RVGIIGHNGAGKSTLLKLIAGIY----KPTSGKVKVTGKVAPLIELGAGFDPELTGRENIY 111 (249)
T ss_pred EecCceEEEeCCC------EEEEECCCCCcHHHHHHHHhCcc----CCCCceEEEcceEehhhhcccCCCcccchHHHHH
Confidence 6899999999999 99999999999999999999999 99999977666532 2222233 3333
Q ss_pred hhccccCCCccccc---ch-----------------hhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHH
Q 005138 94 LIMDLEGTDGRERG---ED-----------------DTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKT 150 (712)
Q Consensus 94 ~v~d~~g~~~~~r~---~~-----------------~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~ 150 (712)
+..-..|+...+.. ++ .+..|+-|++||.|+. ||||+||+.+-.|+.- .+.
T Consensus 112 l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F------~~K 185 (249)
T COG1134 112 LRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAF------QEK 185 (249)
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHH------HHH
Confidence 33333444433211 11 1222999999999999 9999999999999887 778
Q ss_pred HHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCccccc
Q 005138 151 VFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (712)
Q Consensus 151 v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~ 202 (712)
-.+.+.++.++ +.|+|+||||++.+...|++.+++++ |+|...|+++++.
T Consensus 186 ~~~rl~e~~~~-~~tiv~VSHd~~~I~~~Cd~~i~l~~-G~i~~~G~~~~vi 235 (249)
T COG1134 186 CLERLNELVEK-NKTIVLVSHDLGAIKQYCDRAIWLEH-GQIRMEGSPEEVI 235 (249)
T ss_pred HHHHHHHHHHc-CCEEEEEECCHHHHHHhcCeeEEEeC-CEEEEcCCHHHHH
Confidence 88888888665 79999999999999999999999999 9999999987764
No 220
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.88 E-value=2e-22 Score=203.90 Aligned_cols=168 Identities=13% Similarity=0.106 Sum_probs=126.9
Q ss_pred cEEEEeeeeeecc---ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC------
Q 005138 9 STQLIDGDGTFNV---SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------ 79 (712)
Q Consensus 9 ~I~l~~l~k~y~~---~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~------ 79 (712)
.|++.++++.|+. .+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+
T Consensus 6 ~l~~~~l~~~~~~~~~~~l~~isl~i~~G~------~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~~~~ 75 (207)
T cd03369 6 EIEVENLSVRYAPDLPPVLKNVSFKVKAGE------KIGIVGRTGAGKSTLILALFRFL----EAEEGKIEIDGIDISTI 75 (207)
T ss_pred eEEEEEEEEEeCCCCcccccCceEEECCCC------EEEEECCCCCCHHHHHHHHhccc----CCCCCeEEECCEEhHHC
Confidence 5899999999953 47999999999999 99999999999999999999998 89999853221
Q ss_pred -------Ceee-ccccCCCccchhccccCCC---c----------ccccchhhHHHHHHHHHHHHHH---HHhhhccccC
Q 005138 80 -------GIWM-ARCAGIEPCTLIMDLEGTD---G----------RERGEDDTAFEKQSALFALAVS---DIVLINMWCH 135 (712)
Q Consensus 80 -------gi~~-~~~~~~~~~~~v~d~~g~~---~----------~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~ 135 (712)
++.+ .......+. .+.+..... . .......+..|+||+++|+|++ +++|+||||+
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~~-tv~~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~ 154 (207)
T cd03369 76 PLEDLRSSLTIIPQDPTLFSG-TIRSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATA 154 (207)
T ss_pred CHHHHHhhEEEEecCCcccCc-cHHHHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcc
Confidence 1110 000011111 111111100 0 0111233456999999999999 9999999999
Q ss_pred CCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecC
Q 005138 136 DIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (712)
Q Consensus 136 ~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~ 197 (712)
+||+.. ...+.++++++. + |.|+|++||+++.+.. |++++++.+ |++...|+
T Consensus 155 ~LD~~~------~~~l~~~l~~~~-~-~~tiii~th~~~~~~~-~d~v~~l~~-g~i~~~g~ 206 (207)
T cd03369 155 SIDYAT------DALIQKTIREEF-T-NSTILTIAHRLRTIID-YDKILVMDA-GEVKEYDH 206 (207)
T ss_pred cCCHHH------HHHHHHHHHHhc-C-CCEEEEEeCCHHHHhh-CCEEEEEEC-CEEEecCC
Confidence 999998 999999999984 3 8999999999988865 899988888 99987765
No 221
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.88 E-value=1.1e-22 Score=209.61 Aligned_cols=171 Identities=17% Similarity=0.142 Sum_probs=127.7
Q ss_pred EEEEeeeeeec--cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC--------
Q 005138 10 TQLIDGDGTFN--VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (712)
Q Consensus 10 I~l~~l~k~y~--~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~-------- 79 (712)
|++.|+++.|. ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge------~~~l~G~nGsGKSTLl~~i~Gl~----~~~~G~v~~~g~~~~~~~~ 70 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGK------KVAIVGPSGSGKSTILRLLFRFY----DVSSGSILIDGQDIREVTL 70 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHhccc----CCCCCEEEECCEEhhhCCH
Confidence 46889999994 347999999999999 99999999999999999999999 89999853321
Q ss_pred -----Ceee-ccccCCCccchhcccc-------------------CCCc-------------ccccchhhHHHHHHHHHH
Q 005138 80 -----GIWM-ARCAGIEPCTLIMDLE-------------------GTDG-------------RERGEDDTAFEKQSALFA 121 (712)
Q Consensus 80 -----gi~~-~~~~~~~~~~~v~d~~-------------------g~~~-------------~~r~~~~~~ferQrv~~A 121 (712)
++.+ .......+ ..+.+.. +... .......+..|+||+++|
T Consensus 71 ~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la 149 (236)
T cd03253 71 DSLRRAIGVVPQDTVLFN-DTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIA 149 (236)
T ss_pred HHHHhhEEEECCCChhhc-chHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHH
Confidence 0111 00000011 0111100 1000 001123455699999999
Q ss_pred HHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCc
Q 005138 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (712)
Q Consensus 122 ~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~ 198 (712)
+|++ ++||+||||++||+.. ...+.+.+.++.+ |.|+|+|||+++.+.. |++++++.+ |++...|+.
T Consensus 150 ~aL~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~~--~~tiii~sh~~~~~~~-~d~~~~l~~-g~i~~~~~~ 219 (236)
T cd03253 150 RAILKNPPILLLDEATSALDTHT------EREIQAALRDVSK--GRTTIVIAHRLSTIVN-ADKIIVLKD-GRIVERGTH 219 (236)
T ss_pred HHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHhcC--CCEEEEEcCCHHHHHh-CCEEEEEEC-CEEEeeCCH
Confidence 9999 9999999999999998 9999999998853 8999999999988865 999999988 999888775
Q ss_pred ccc
Q 005138 199 PQA 201 (712)
Q Consensus 199 ~e~ 201 (712)
.+.
T Consensus 220 ~~~ 222 (236)
T cd03253 220 EEL 222 (236)
T ss_pred HHH
Confidence 544
No 222
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=7.7e-23 Score=214.83 Aligned_cols=177 Identities=15% Similarity=0.222 Sum_probs=131.3
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccC-----CCCCeeeccCC-
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD-----AFKGRSQTTKG- 80 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~-----p~sG~~~~t~g- 80 (712)
++|++.|+++.|+ ..++++++++++.|+ +++|+|||||||||||++|+|+. . |++|++...+.
T Consensus 9 ~~l~i~~v~~~~~~~~il~~vsl~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~----~~~~~~~~~G~i~~~g~~ 78 (264)
T PRK14243 9 TVLRTENLNVYYGSFLAVKNVWLDIPKNQ------ITAFIGPSGCGKSTILRCFNRLN----DLIPGFRVEGKVTFHGKN 78 (264)
T ss_pred eEEEEeeeEEEECCEEEeecceEEEcCCC------EEEEECCCCCCHHHHHHHHHhhh----cccCCCCCceEEEECCEE
Confidence 4799999999995 457999999999999 99999999999999999999987 4 36787432211
Q ss_pred ee--------eccccCC-------Cccchhcccc-------CCCc-----------------------ccccchhhHHHH
Q 005138 81 IW--------MARCAGI-------EPCTLIMDLE-------GTDG-----------------------RERGEDDTAFEK 115 (712)
Q Consensus 81 i~--------~~~~~~~-------~~~~~v~d~~-------g~~~-----------------------~~r~~~~~~fer 115 (712)
+. +...+++ .+. .+.+.. +... .......+..|+
T Consensus 79 i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~ 157 (264)
T PRK14243 79 LYAPDVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQ 157 (264)
T ss_pred ccccccChHHHhhhEEEEccCCccccc-cHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHH
Confidence 00 0011110 010 111100 1000 001112344599
Q ss_pred HHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccccccccee-----
Q 005138 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRE----- 187 (712)
Q Consensus 116 Qrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~----- 187 (712)
||++||+|++ ++|||||||++||+.. ...+.+++.++.+ +.|||++|||++.+...|++++++.
T Consensus 158 qrv~laral~~~p~lllLDEPt~~LD~~~------~~~l~~~L~~~~~--~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~ 229 (264)
T PRK14243 158 QRLCIARAIAVQPEVILMDEPCSALDPIS------TLRIEELMHELKE--QYTIIIVTHNMQQAARVSDMTAFFNVELTE 229 (264)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHhc--CCEEEEEecCHHHHHHhCCEEEEEeccccc
Confidence 9999999999 9999999999999998 9999999999864 5899999999999999999999998
Q ss_pred ---cCCeEEEecCcccccC
Q 005138 188 ---DIQKIWDSVPKPQAHM 203 (712)
Q Consensus 188 ---~~G~I~~~g~~~e~~~ 203 (712)
+.|+++..|++.+++.
T Consensus 230 ~~~~~g~i~~~~~~~~~~~ 248 (264)
T PRK14243 230 GGGRYGYLVEFDRTEKIFN 248 (264)
T ss_pred ccccCceEEEeCCHHHHHh
Confidence 1399999998776654
No 223
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.88 E-value=9e-23 Score=232.94 Aligned_cols=172 Identities=16% Similarity=0.158 Sum_probs=131.2
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC-------
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~------- 79 (712)
++|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+
T Consensus 3 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge------~~~l~G~nGsGKSTLl~~l~Gl~----~p~~G~I~~~g~~i~~~~ 72 (501)
T PRK11288 3 PYLSFDGIGKTFPGVKALDDISFDCRAGQ------VHALMGENGAGKSTLLKILSGNY----QPDAGSILIDGQEMRFAS 72 (501)
T ss_pred ceEEEeeeEEEECCEEEEeeeeEEEeCCc------EEEEECCCCCCHHHHHHHHhCCC----CCCCCEEEECCEECCCCC
Confidence 4799999999995 357999999999999 99999999999999999999999 89999854321
Q ss_pred -------Ce-eeccccCCCccchhccc----------------------------cCCCc--ccccchhhHHHHHHHHHH
Q 005138 80 -------GI-WMARCAGIEPCTLIMDL----------------------------EGTDG--RERGEDDTAFEKQSALFA 121 (712)
Q Consensus 80 -------gi-~~~~~~~~~~~~~v~d~----------------------------~g~~~--~~r~~~~~~ferQrv~~A 121 (712)
++ ++.......+...+.+. .|+.. .......+..|+||++||
T Consensus 73 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~la 152 (501)
T PRK11288 73 TTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIA 152 (501)
T ss_pred HHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHH
Confidence 11 01111011111111111 01110 011123345599999999
Q ss_pred HHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecC
Q 005138 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (712)
Q Consensus 122 ~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~ 197 (712)
+|++ ++|||||||++||+.. ...+.+.+.++.++ |.|||+||||++.+...|++++++.+ |+++..++
T Consensus 153 ral~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~-g~tiiiitHd~~~~~~~~d~i~~l~~-G~i~~~~~ 223 (501)
T PRK11288 153 KALARNARVIAFDEPTSSLSARE------IEQLFRVIRELRAE-GRVILYVSHRMEEIFALCDAITVFKD-GRYVATFD 223 (501)
T ss_pred HHHHhCCCEEEEcCCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEeecC
Confidence 9999 9999999999999998 99999999998654 89999999999999888999999988 99987654
No 224
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.88 E-value=4.4e-23 Score=236.95 Aligned_cols=177 Identities=10% Similarity=0.140 Sum_probs=133.9
Q ss_pred cEEEEeeeeeec-----cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCC-----CCCeeecc
Q 005138 9 STQLIDGDGTFN-----VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA-----FKGRSQTT 78 (712)
Q Consensus 9 ~I~l~~l~k~y~-----~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p-----~sG~~~~t 78 (712)
+|++.|+++.|+ ..++++++|++..|+ +++|+||||||||||||+|+|+. +| ++|++...
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge------~~~iiG~nGsGKSTLl~~i~G~~----~~~~~~~~~G~i~~~ 74 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGE------TLALVGESGSGKSVTALSILRLL----PSPPVVYPSGDIRFH 74 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCC------EEEEECCCCCcHHHHHHHHhcCC----CCCcCCccceEEEEC
Confidence 699999999995 247999999999999 99999999999999999999998 65 68874321
Q ss_pred CC-ee---------e-ccccCC---------Cccchh--------------------------ccccCCCc-----cccc
Q 005138 79 KG-IW---------M-ARCAGI---------EPCTLI--------------------------MDLEGTDG-----RERG 107 (712)
Q Consensus 79 ~g-i~---------~-~~~~~~---------~~~~~v--------------------------~d~~g~~~-----~~r~ 107 (712)
+. +. . ...+++ .+...+ ++..|+.. ....
T Consensus 75 g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 154 (529)
T PRK15134 75 GESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYP 154 (529)
T ss_pred CEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCC
Confidence 10 00 0 001111 000000 00012211 1112
Q ss_pred chhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccccccc
Q 005138 108 EDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPV 184 (712)
Q Consensus 108 ~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ 184 (712)
...+..||||++||+|++ ++|||||||++||+.. ...+++++.++.++.|.|||+||||++.+...|++++
T Consensus 155 ~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~------~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~ 228 (529)
T PRK15134 155 HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSV------QAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVA 228 (529)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHH------HHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEE
Confidence 233456999999999999 9999999999999999 9999999999876558999999999999988899999
Q ss_pred ceecCCeEEEecCccccc
Q 005138 185 LREDIQKIWDSVPKPQAH 202 (712)
Q Consensus 185 ll~~~G~I~~~g~~~e~~ 202 (712)
++.+ |+++..|++.+++
T Consensus 229 ~l~~-G~i~~~g~~~~~~ 245 (529)
T PRK15134 229 VMQN-GRCVEQNRAATLF 245 (529)
T ss_pred EEEC-CEEEEeCCHHHHh
Confidence 9998 9999988876554
No 225
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=9.6e-23 Score=216.57 Aligned_cols=176 Identities=14% Similarity=0.185 Sum_probs=129.7
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccC-----CCCCeeeccCC-
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD-----AFKGRSQTTKG- 80 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~-----p~sG~~~~t~g- 80 (712)
++|++.++++.|+ ..++++++|+++.|+ +++|+|||||||||||++|+|+. + |++|++...+.
T Consensus 38 ~~l~i~~l~~~~~~~~il~~is~~i~~Ge------~~~I~G~nGsGKSTLl~~l~Gl~----~~~~~~p~~G~I~i~G~~ 107 (285)
T PRK14254 38 TVIEARDLNVFYGDEQALDDVSMDIPENQ------VTAMIGPSGCGKSTFLRCINRMN----DLIDAARVEGELTFRGKN 107 (285)
T ss_pred ceEEEEEEEEEECCEeeEeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHhccC----CcccCCCCceEEEECCEE
Confidence 3699999999995 457999999999999 99999999999999999999998 5 57887432111
Q ss_pred ee--------eccccCC-------Ccc------chhcc-----------------ccCCCc------ccccchhhHHHHH
Q 005138 81 IW--------MARCAGI-------EPC------TLIMD-----------------LEGTDG------RERGEDDTAFEKQ 116 (712)
Q Consensus 81 i~--------~~~~~~~-------~~~------~~v~d-----------------~~g~~~------~~r~~~~~~ferQ 116 (712)
+. +...+++ .+. .+... ..|+.. .......+..|+|
T Consensus 108 i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~q 187 (285)
T PRK14254 108 VYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQ 187 (285)
T ss_pred ccccccchHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHH
Confidence 00 0011110 000 00000 011110 0111233455999
Q ss_pred HHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccc-eecCCeE
Q 005138 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVL-REDIQKI 192 (712)
Q Consensus 117 rv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~l-l~~~G~I 192 (712)
|++||+|++ ++|||||||++||+.. ...+.+++.++.+ +.|+|++|||++.+..+|+++++ +.+ |++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~------~~~l~~~L~~~~~--~~tiii~tH~~~~i~~~~dri~v~l~~-G~i 258 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVA------TSKIEDLIEELAE--EYTVVIVTHNMQQAARISDKTAVFLTG-GEL 258 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHhc--CCEEEEEeCCHHHHHhhcCEEEEEeeC-CEE
Confidence 999999999 9999999999999998 9999999999865 47999999999998888998754 466 999
Q ss_pred EEecCccccc
Q 005138 193 WDSVPKPQAH 202 (712)
Q Consensus 193 ~~~g~~~e~~ 202 (712)
+..|++.+.+
T Consensus 259 ~~~g~~~~~~ 268 (285)
T PRK14254 259 VEFDDTDKIF 268 (285)
T ss_pred EEeCCHHHHH
Confidence 9988766554
No 226
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.88 E-value=3.9e-23 Score=215.18 Aligned_cols=180 Identities=17% Similarity=0.179 Sum_probs=127.8
Q ss_pred EEEeeeeeeccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-e--------
Q 005138 11 QLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-I-------- 81 (712)
Q Consensus 11 ~l~~l~k~y~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i-------- 81 (712)
++.|+++. .+|+++++++..|+ +++|+||||||||||+++|+|+. + .+|++...+. +
T Consensus 2 ~~~~l~~~---~~l~~vsl~i~~Ge------i~~l~G~nGsGKSTLl~~l~Gl~----~-~~G~i~~~g~~i~~~~~~~~ 67 (248)
T PRK03695 2 QLNDVAVS---TRLGPLSAEVRAGE------ILHLVGPNGAGKSTLLARMAGLL----P-GSGSIQFAGQPLEAWSAAEL 67 (248)
T ss_pred cccccchh---ceecceEEEEcCCC------EEEEECCCCCCHHHHHHHHcCCC----C-CCeEEEECCEecCcCCHHHH
Confidence 45666665 26899999999999 99999999999999999999998 4 4787432211 0
Q ss_pred -----eeccccCCCccchhcccc------CCCcc--------------------cccchhhHHHHHHHHHHHHHH-----
Q 005138 82 -----WMARCAGIEPCTLIMDLE------GTDGR--------------------ERGEDDTAFEKQSALFALAVS----- 125 (712)
Q Consensus 82 -----~~~~~~~~~~~~~v~d~~------g~~~~--------------------~r~~~~~~ferQrv~~A~Ala----- 125 (712)
++...........+.+.. +.... ......+..|+||++||+|++
T Consensus 68 ~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~ 147 (248)
T PRK03695 68 ARHRAYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPD 147 (248)
T ss_pred hhheEEecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccc
Confidence 000000000111111110 11000 011122344999999999997
Q ss_pred -----HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCccc
Q 005138 126 -----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (712)
Q Consensus 126 -----~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e 200 (712)
++||+||||++||+.. ...+.+++.++.++ |.|+|++|||++.+...|++++++.+ |+++..|+..+
T Consensus 148 ~~p~p~llllDEPt~~LD~~~------~~~l~~~L~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~~-G~i~~~g~~~~ 219 (248)
T PRK03695 148 INPAGQLLLLDEPMNSLDVAQ------QAALDRLLSELCQQ-GIAVVMSSHDLNHTLRHADRVWLLKQ-GKLLASGRRDE 219 (248)
T ss_pred cCCCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhCCEEEEEEC-CEEEEECCHHH
Confidence 7999999999999998 99999999998754 89999999999998889999999988 99999888766
Q ss_pred ccCCccchhhhc
Q 005138 201 AHMETPLSEFFN 212 (712)
Q Consensus 201 ~~~~~~l~d~f~ 212 (712)
+.....+.+.|+
T Consensus 220 ~~~~~~~~~~~~ 231 (248)
T PRK03695 220 VLTPENLAQVFG 231 (248)
T ss_pred HhCchHHHHHhC
Confidence 544333344443
No 227
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.88 E-value=1.9e-22 Score=205.71 Aligned_cols=165 Identities=16% Similarity=0.190 Sum_probs=123.5
Q ss_pred EEEEeeeeeecc---ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC-------
Q 005138 10 TQLIDGDGTFNV---SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK------- 79 (712)
Q Consensus 10 I~l~~l~k~y~~---~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~------- 79 (712)
|++.|+++.|+. .++++++++++.|+ +++|+|||||||||||++|+|+. +|++|++...+
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~------~~~i~G~nGsGKSTLl~~i~G~~----~~~~G~i~~~g~~~~~~~ 72 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGE------KVAIIGRVGSGKSTLLKLLAGLY----KPTSGSVLLDGTDIRQLD 72 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCC------EEEEECCCCCCHHHHHHHHhcCc----CCCCCeEEECCEEhHHCC
Confidence 789999999952 37999999999999 99999999999999999999998 89999843221
Q ss_pred ------Ce-eeccccCCCccchhccc-------------------cCCCccc-------------ccchhhHHHHHHHHH
Q 005138 80 ------GI-WMARCAGIEPCTLIMDL-------------------EGTDGRE-------------RGEDDTAFEKQSALF 120 (712)
Q Consensus 80 ------gi-~~~~~~~~~~~~~v~d~-------------------~g~~~~~-------------r~~~~~~ferQrv~~ 120 (712)
++ ++.......+ ..+.+. .++.... .....+..|+||+.|
T Consensus 73 ~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~l 151 (220)
T cd03245 73 PADLRRNIGYVPQDVTLFY-GTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVAL 151 (220)
T ss_pred HHHHHhhEEEeCCCCcccc-chHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHH
Confidence 11 1111100000 011111 0111000 012345669999999
Q ss_pred HHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEe
Q 005138 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (712)
Q Consensus 121 A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~ 195 (712)
|+|++ ++||+||||++||+.. ...+.+.+.++.+ ++|||+||||++.. ..|++++++.+ |+++..
T Consensus 152 a~al~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~--~~tii~~sH~~~~~-~~~d~v~~l~~-g~i~~~ 219 (220)
T cd03245 152 ARALLNDPPILLLDEPTSAMDMNS------EERLKERLRQLLG--DKTLIIITHRPSLL-DLVDRIIVMDS-GRIVAD 219 (220)
T ss_pred HHHHhcCCCEEEEeCccccCCHHH------HHHHHHHHHHhcC--CCEEEEEeCCHHHH-HhCCEEEEEeC-CeEeec
Confidence 99999 9999999999999999 9999999999864 38999999999876 57999988888 998754
No 228
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.88 E-value=1.3e-22 Score=204.70 Aligned_cols=162 Identities=22% Similarity=0.245 Sum_probs=119.9
Q ss_pred EEEEeeeeeecc------ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeee
Q 005138 10 TQLIDGDGTFNV------SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM 83 (712)
Q Consensus 10 I~l~~l~k~y~~------~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~ 83 (712)
|++.|+++.|+. .++++++++++.|+ +++|+|||||||||||++|+|+. +|++|++...+.+.+
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~------~~~i~G~nG~GKSTLl~~i~G~~----~~~~G~i~~~g~i~~ 70 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGE------LVAIVGPVGSGKSSLLSALLGEL----EKLSGSVSVPGSIAY 70 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCC------EEEEECCCCCCHHHHHHHHhCcC----CCCCCeEEEcCEEEE
Confidence 478999999953 47999999999999 99999999999999999999998 899998654432221
Q ss_pred -ccccCCCccchhcccc------------------CC-----------C--cccccchhhHHHHHHHHHHHHHH---HHh
Q 005138 84 -ARCAGIEPCTLIMDLE------------------GT-----------D--GRERGEDDTAFEKQSALFALAVS---DIV 128 (712)
Q Consensus 84 -~~~~~~~~~~~v~d~~------------------g~-----------~--~~~r~~~~~~ferQrv~~A~Ala---~iL 128 (712)
.......+. .+.+.. ++ . ........+..|+||+++|+|++ +++
T Consensus 71 ~~q~~~l~~~-t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ll 149 (204)
T cd03250 71 VSQEPWIQNG-TIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIY 149 (204)
T ss_pred EecCchhccC-cHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 111110000 000000 00 0 00112334566999999999999 999
Q ss_pred hhccccCCCchhhhhChhhHHHHHHH-HHHhhCCCCceEEEEecCCCCcccccccccceecCCe
Q 005138 129 LINMWCHDIGREQAANKPLLKTVFQV-MMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (712)
Q Consensus 129 lLDEP~~~LD~~~~a~~~l~~~v~e~-l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~ 191 (712)
|+|||+++||+.. .+.+++. +.++.+. |.|+|++||+++.+.. |++++++.+ |+
T Consensus 150 llDEP~~~LD~~~------~~~l~~~ll~~~~~~-~~tvi~~sh~~~~~~~-~d~i~~l~~-G~ 204 (204)
T cd03250 150 LLDDPLSAVDAHV------GRHIFENCILGLLLN-NKTRILVTHQLQLLPH-ADQIVVLDN-GR 204 (204)
T ss_pred EEeCccccCCHHH------HHHHHHHHHHHhccC-CCEEEEEeCCHHHHhh-CCEEEEEeC-CC
Confidence 9999999999988 8888885 5555554 8999999999988887 888888877 64
No 229
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.1e-22 Score=214.63 Aligned_cols=178 Identities=16% Similarity=0.152 Sum_probs=132.0
Q ss_pred cccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccC-----CCCCeeeccCC
Q 005138 7 CCSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD-----AFKGRSQTTKG 80 (712)
Q Consensus 7 ~~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~-----p~sG~~~~t~g 80 (712)
..+|++.|+++.|+ ..++++++|++..|+ +++|+||||||||||+++|+|+. + |++|++...+.
T Consensus 23 ~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge------~~~I~G~nGsGKSTLl~~laGl~----~~~~~~~~~G~i~i~g~ 92 (272)
T PRK14236 23 QTALEVRNLNLFYGDKQALFDISMRIPKNR------VTAFIGPSGCGKSTLLRCFNRMN----DLVDNCRIEGEIRLDGQ 92 (272)
T ss_pred CcEEEEEEEEEEECCeeEeeeEEEEEcCCC------EEEEECCCCCCHHHHHHHHHhcC----CCccCCCCceEEEECCE
Confidence 34799999999995 457999999999999 99999999999999999999997 5 37887432211
Q ss_pred -e--------eeccccCC-------Ccc------chhcccc-------------------CCCc------ccccchhhHH
Q 005138 81 -I--------WMARCAGI-------EPC------TLIMDLE-------------------GTDG------RERGEDDTAF 113 (712)
Q Consensus 81 -i--------~~~~~~~~-------~~~------~~v~d~~-------------------g~~~------~~r~~~~~~f 113 (712)
+ .....+++ .+. .+..... |+.. .......+..
T Consensus 93 ~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G 172 (272)
T PRK14236 93 NIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGG 172 (272)
T ss_pred ECcccccCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHH
Confidence 0 00011110 000 0000111 1100 0011223445
Q ss_pred HHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCC
Q 005138 114 EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ 190 (712)
Q Consensus 114 erQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G 190 (712)
|+||+++|+|++ +++|+||||++||+.. ...+.+.+.++.+ +.|+|++||+++.+...|++++++.+ |
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~------~~~l~~~L~~~~~--~~tiiivtH~~~~~~~~~d~i~~l~~-G 243 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPIS------TLKIEELITELKS--KYTIVIVTHNMQQAARVSDYTAFMYM-G 243 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHh--CCeEEEEeCCHHHHHhhCCEEEEEEC-C
Confidence 999999999999 9999999999999998 9999999999863 68999999999998888999999988 9
Q ss_pred eEEEecCcccccC
Q 005138 191 KIWDSVPKPQAHM 203 (712)
Q Consensus 191 ~I~~~g~~~e~~~ 203 (712)
++...|++.+...
T Consensus 244 ~i~~~g~~~~~~~ 256 (272)
T PRK14236 244 KLVEYGDTDTLFT 256 (272)
T ss_pred EEEecCCHHHHhc
Confidence 9999888766543
No 230
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.2e-22 Score=211.52 Aligned_cols=178 Identities=13% Similarity=0.166 Sum_probs=131.0
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccC--C---CCCeeeccC--
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD--A---FKGRSQTTK-- 79 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~--p---~sG~~~~t~-- 79 (712)
.+|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. + | ++|++...+
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge------~~~l~G~nGsGKSTLl~~l~Gl~----~~~~~~~~~G~i~~~g~~ 73 (252)
T PRK14255 4 KIITSSDVHLFYGKFEALKGIDLDFNQNE------ITALIGPSGCGKSTYLRTLNRMN----DLIPGVTITGNVSLRGQN 73 (252)
T ss_pred ceEEEEeEEEEECCeeEEecceEEEcCCC------EEEEECCCCCCHHHHHHHHhccc----ccCCCCCcccEEEEcCEE
Confidence 4699999999995 357999999999999 99999999999999999999986 3 3 478743211
Q ss_pred -------------Cee-eccccCCCcc------chhccccCCCc-------------------------ccccchhhHHH
Q 005138 80 -------------GIW-MARCAGIEPC------TLIMDLEGTDG-------------------------RERGEDDTAFE 114 (712)
Q Consensus 80 -------------gi~-~~~~~~~~~~------~~v~d~~g~~~-------------------------~~r~~~~~~fe 114 (712)
++. +.......+. .+.....+... .......+..|
T Consensus 74 ~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq 153 (252)
T PRK14255 74 IYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQ 153 (252)
T ss_pred cccccccHHHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHH
Confidence 110 0000000010 00000011000 00112234459
Q ss_pred HHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCe
Q 005138 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (712)
Q Consensus 115 rQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~ 191 (712)
+||++||+|++ ++||+||||++||+.. .+.+.+.+.++.+ +.|+|+||||++.+...|++++++.+ |+
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~--~~tii~vsH~~~~~~~~~d~i~~l~~-G~ 224 (252)
T PRK14255 154 QQRVCIARVLAVKPDVILLDEPTSALDPIS------STQIENMLLELRD--QYTIILVTHSMHQASRISDKTAFFLT-GN 224 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEEC-CE
Confidence 99999999999 9999999999999998 9999999999854 58999999999999888999999988 99
Q ss_pred EEEecCcccccCC
Q 005138 192 IWDSVPKPQAHME 204 (712)
Q Consensus 192 I~~~g~~~e~~~~ 204 (712)
++..+++.+.+.+
T Consensus 225 i~~~~~~~~~~~~ 237 (252)
T PRK14255 225 LIEFADTKQMFLN 237 (252)
T ss_pred EEEeCCHHHHhcC
Confidence 9999887666543
No 231
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.88 E-value=1.5e-22 Score=204.82 Aligned_cols=173 Identities=17% Similarity=0.181 Sum_probs=129.9
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeecc-----CC-
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT-----KG- 80 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t-----~g- 80 (712)
+.|++.|++..|+ ..+|++++.+|++|+ -.+|+|||||||||||++++|-. .|++|....- +|
T Consensus 30 ~li~l~~v~v~r~gk~iL~~isW~V~~ge------~W~I~G~NGsGKTTLL~ll~~~~----~pssg~~~~~G~~~G~~~ 99 (257)
T COG1119 30 PLIELKNVSVRRNGKKILGDLSWQVNPGE------HWAIVGPNGAGKTTLLSLLTGEH----PPSSGDVTLLGRRFGKGE 99 (257)
T ss_pred ceEEecceEEEECCEeeccccceeecCCC------cEEEECCCCCCHHHHHHHHhccc----CCCCCceeeeeeeccCCc
Confidence 5699999999995 567999999999999 99999999999999999999999 6887773211 11
Q ss_pred e--eeccccCC---------Cccchhcc--------ccCCCcc-ccc-----------------------chhhHHHHHH
Q 005138 81 I--WMARCAGI---------EPCTLIMD--------LEGTDGR-ERG-----------------------EDDTAFEKQS 117 (712)
Q Consensus 81 i--~~~~~~~~---------~~~~~v~d--------~~g~~~~-~r~-----------------------~~~~~ferQr 117 (712)
. .+++.+|+ .....+.| ..|.... ... ...+..||||
T Consensus 100 ~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rr 179 (257)
T COG1119 100 TIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRR 179 (257)
T ss_pred chHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHH
Confidence 1 12233332 11111222 2222220 000 0112239999
Q ss_pred HHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCC-CCceEEEEecCCCCcccccccccceecCCeEE
Q 005138 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP-RKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (712)
Q Consensus 118 v~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~-~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~ 193 (712)
++||||++ ++||||||++|||..+ +..+.+.+.++... .+.++|||||..++++...+++.++.+ |+++
T Consensus 180 vLiaRALv~~P~LLiLDEP~~GLDl~~------re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~-g~v~ 252 (257)
T COG1119 180 VLIARALVKDPELLILDEPAQGLDLIA------REQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKE-GEVV 252 (257)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHH------HHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeC-Ccee
Confidence 99999999 9999999999999998 88999999888753 478999999999999987778888888 9999
Q ss_pred EecC
Q 005138 194 DSVP 197 (712)
Q Consensus 194 ~~g~ 197 (712)
..|.
T Consensus 253 ~~g~ 256 (257)
T COG1119 253 AQGK 256 (257)
T ss_pred eccc
Confidence 8764
No 232
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1e-22 Score=215.11 Aligned_cols=178 Identities=16% Similarity=0.190 Sum_probs=132.1
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCC-----CCCeeeccC--
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA-----FKGRSQTTK-- 79 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p-----~sG~~~~t~-- 79 (712)
.+|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +| ++|++...+
T Consensus 19 ~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge------~~~IiG~nGsGKSTLl~~l~Gl~----~~~~~~~~~G~i~~~g~~ 88 (274)
T PRK14265 19 SVFEVEGVKVFYGGFLALVDVHLKIPAKK------IIAFIGPSGCGKSTLLRCFNRMN----DLIPGAKVEGRLLYRDRN 88 (274)
T ss_pred ceEEEeeEEEEeCCeEEEeeeeeEEcCCC------EEEEECCCCCCHHHHHHHHhccc----ccccCCCcCceEEECCEe
Confidence 4799999999995 347999999999999 99999999999999999999997 42 578642211
Q ss_pred -------------Ce-eeccccCCCccchhcccc------------------------CCC----c--ccccchhhHHHH
Q 005138 80 -------------GI-WMARCAGIEPCTLIMDLE------------------------GTD----G--RERGEDDTAFEK 115 (712)
Q Consensus 80 -------------gi-~~~~~~~~~~~~~v~d~~------------------------g~~----~--~~r~~~~~~fer 115 (712)
++ ++.......+. .+.+.. |+. . ..........|+
T Consensus 89 l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~ 167 (274)
T PRK14265 89 IYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQ 167 (274)
T ss_pred cccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHH
Confidence 11 00000000000 111100 110 0 001122345599
Q ss_pred HHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccccccccee-----
Q 005138 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRE----- 187 (712)
Q Consensus 116 Qrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~----- 187 (712)
||+++|+|++ ++|||||||++||+.. ...+.+++.++.+ +.|||++|||++.+...|++++++.
T Consensus 168 qrv~LAraL~~~p~lllLDEPt~~LD~~~------~~~l~~~L~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~~~~~ 239 (274)
T PRK14265 168 QRLCIARAIAMKPDVLLMDEPCSALDPIS------TRQVEELCLELKE--QYTIIMVTHNMQQASRVADWTAFFNTEIDE 239 (274)
T ss_pred HHHHHHHHHhhCCCEEEEeCCcccCCHHH------HHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEeccccc
Confidence 9999999999 9999999999999998 9999999999853 6899999999999999999999997
Q ss_pred ---cCCeEEEecCcccccCC
Q 005138 188 ---DIQKIWDSVPKPQAHME 204 (712)
Q Consensus 188 ---~~G~I~~~g~~~e~~~~ 204 (712)
+.|+++..|++.+++.+
T Consensus 240 ~~~~~G~~~~~g~~~~~~~~ 259 (274)
T PRK14265 240 YGKRRGKLVEFSPTEQMFGS 259 (274)
T ss_pred ccccCceEEEeCCHHHHHhC
Confidence 24999999998776543
No 233
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.88 E-value=1.2e-22 Score=210.97 Aligned_cols=175 Identities=18% Similarity=0.110 Sum_probs=127.5
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC--------
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~-------- 79 (712)
||++.|+++.|+ ..++++++++++.|+ +++|+|||||||||||++|+|+.. .+|++|++...+
T Consensus 1 ~i~~~nl~~~~~~~~~l~~isl~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~~--~~~~~G~i~~~g~~~~~~~~ 72 (248)
T PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGE------VHAIMGPNGSGKSTLSATLAGRED--YEVTGGTVEFKGKDLLELSP 72 (248)
T ss_pred CeEEEEEEEEeCCeeeeecceeEEcCCC------EEEEECCCCCCHHHHHHHHcCCcc--CCCCceEEEECCCccccCCH
Confidence 489999999995 457999999999999 999999999999999999999940 048889743221
Q ss_pred ------Ceee-ccccCCCcc----c---hhcc-------------------------ccCCCc---cccc-chhhHHHHH
Q 005138 80 ------GIWM-ARCAGIEPC----T---LIMD-------------------------LEGTDG---RERG-EDDTAFEKQ 116 (712)
Q Consensus 80 ------gi~~-~~~~~~~~~----~---~v~d-------------------------~~g~~~---~~r~-~~~~~ferQ 116 (712)
++.+ .......+. . .+.+ ..+++. .... ...+..|+|
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~q 152 (248)
T PRK09580 73 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKK 152 (248)
T ss_pred HHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHH
Confidence 1111 000000000 0 0000 001100 0001 134567999
Q ss_pred HHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccc-cccccceecCCeE
Q 005138 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE-NLEPVLREDIQKI 192 (712)
Q Consensus 117 rv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~-~~~~~ll~~~G~I 192 (712)
|++||+|++ ++||+||||++||+.. ...+.+.+.++.+. |+|||+||||++.+... +++++++.+ |++
T Consensus 153 rv~laral~~~p~illLDEPt~~LD~~~------~~~l~~~l~~l~~~-~~tiii~sH~~~~~~~~~~d~i~~l~~-g~i 224 (248)
T PRK09580 153 RNDILQMAVLEPELCILDESDSGLDIDA------LKIVADGVNSLRDG-KRSFIIVTHYQRILDYIKPDYVHVLYQ-GRI 224 (248)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHHhhhCCEEEEEEC-CeE
Confidence 999999999 9999999999999998 99999999988654 89999999999887766 788888877 999
Q ss_pred EEecCcc
Q 005138 193 WDSVPKP 199 (712)
Q Consensus 193 ~~~g~~~ 199 (712)
+..|++.
T Consensus 225 ~~~g~~~ 231 (248)
T PRK09580 225 VKSGDFT 231 (248)
T ss_pred EEeCCHH
Confidence 9888654
No 234
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.88 E-value=9.8e-23 Score=201.69 Aligned_cols=140 Identities=20% Similarity=0.096 Sum_probs=113.3
Q ss_pred Eeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccccCCCc
Q 005138 13 IDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEP 91 (712)
Q Consensus 13 ~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~~~~~~ 91 (712)
.|+++.|+ ..++.+. ++++.|+ +++|+||||||||||+|+|+|+. +|++|++...+ .. +++
T Consensus 4 ~~l~~~~~~~~~l~~~-~~i~~Ge------~~~l~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g-~~----i~~-- 65 (177)
T cd03222 4 PDCVKRYGVFFLLVEL-GVVKEGE------VIGIVGPNGTGKTTAVKILAGQL----IPNGDNDEWDG-IT----PVY-- 65 (177)
T ss_pred CCeEEEECCEEEEccC-cEECCCC------EEEEECCCCChHHHHHHHHHcCC----CCCCcEEEECC-EE----EEE--
Confidence 46788885 3456664 7888888 99999999999999999999999 89989854332 11 111
Q ss_pred cchhccccCCCcccccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEE
Q 005138 92 CTLIMDLEGTDGRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMF 168 (712)
Q Consensus 92 ~~~v~d~~g~~~~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~ 168 (712)
+.+.. ..+..|+||+++|+|++ +++|+||||++||+.. ...+.+.+.++.++.+.|+|+
T Consensus 66 ---~~q~~---------~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~------~~~l~~~l~~~~~~~~~tiii 127 (177)
T cd03222 66 ---KPQYI---------DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQ------RLNAARAIRRLSEEGKKTALV 127 (177)
T ss_pred ---EcccC---------CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH------HHHHHHHHHHHHHcCCCEEEE
Confidence 00100 05788999999999999 9999999999999998 999999999987653489999
Q ss_pred EecCCCCcccccccccceec
Q 005138 169 VIRDKTRTPLENLEPVLRED 188 (712)
Q Consensus 169 VtHDl~~~~~~~~~~~ll~~ 188 (712)
||||++.+...|++++++.+
T Consensus 128 vsH~~~~~~~~~d~i~~l~~ 147 (177)
T cd03222 128 VEHDLAVLDYLSDRIHVFEG 147 (177)
T ss_pred EECCHHHHHHhCCEEEEEcC
Confidence 99999998888999988877
No 235
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.88 E-value=1.3e-22 Score=204.93 Aligned_cols=158 Identities=11% Similarity=0.071 Sum_probs=114.8
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee----
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW---- 82 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~---- 82 (712)
||++.++++.|+ ..++++++++++.|+ +++|+||||||||||+++|+|+. +|++|++...+. +.
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge------~~~l~G~nGsGKSTLl~~l~G~~----~p~~G~v~~~g~~~~~~~~ 70 (204)
T PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGE------LVQIEGPNGAGKTSLLRILAGLA----RPDAGEVLWQGEPIRRQRD 70 (204)
T ss_pred CeEEEEEEEEECCEEEEecceEEECCCc------EEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEEcccchH
Confidence 489999999995 347999999999999 99999999999999999999999 899998543221 10
Q ss_pred -eccccC-------CCccchhcccc----------------------CCCc--ccccchhhHHHHHHHHHHHHHH---HH
Q 005138 83 -MARCAG-------IEPCTLIMDLE----------------------GTDG--RERGEDDTAFEKQSALFALAVS---DI 127 (712)
Q Consensus 83 -~~~~~~-------~~~~~~v~d~~----------------------g~~~--~~r~~~~~~ferQrv~~A~Ala---~i 127 (712)
.....+ ..+...+.+.. |+.. .......+..|+||+++|+|++ ++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 150 (204)
T PRK13538 71 EYHQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPL 150 (204)
T ss_pred HhhhheEEeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 000011 11111111110 1110 0011122344999999999999 99
Q ss_pred hhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccc
Q 005138 128 VLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEP 183 (712)
Q Consensus 128 LlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~ 183 (712)
+|+||||++||+.. ...+.+++.++.++ |.|+|+||||++.+.....++
T Consensus 151 lllDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tiii~sh~~~~i~~~~~~~ 199 (204)
T PRK13538 151 WILDEPFTAIDKQG------VARLEALLAQHAEQ-GGMVILTTHQDLPVASDKVRK 199 (204)
T ss_pred EEEeCCCccCCHHH------HHHHHHHHHHHHHC-CCEEEEEecChhhhccCCceE
Confidence 99999999999998 99999999998654 899999999998887633333
No 236
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.2e-22 Score=211.42 Aligned_cols=180 Identities=15% Similarity=0.171 Sum_probs=130.8
Q ss_pred cccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccC-ccCCCCCeeeccCCee--
Q 005138 7 CCSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFR-EMDAFKGRSQTTKGIW-- 82 (712)
Q Consensus 7 ~~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~-~m~p~sG~~~~t~gi~-- 82 (712)
|++|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+... ...|++|++...+...
T Consensus 1 ~~~l~~~~v~~~~~~~~~l~~~s~~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~ 74 (250)
T PRK14266 1 MYRIEVENLNTYFDDAHILKNVNLDIPKNS------VTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYD 74 (250)
T ss_pred CcEEEEEeEEEEeCCeEEEeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccc
Confidence 35799999999995 357999999999999 9999999999999999999998610 0003788743221100
Q ss_pred -------eccccCC-------Cccchhccc-------cCCCcc-------------------------cccchhhHHHHH
Q 005138 83 -------MARCAGI-------EPCTLIMDL-------EGTDGR-------------------------ERGEDDTAFEKQ 116 (712)
Q Consensus 83 -------~~~~~~~-------~~~~~v~d~-------~g~~~~-------------------------~r~~~~~~ferQ 116 (712)
....+++ .+. .+.+. .+.... ......+..|+|
T Consensus 75 ~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~q 153 (250)
T PRK14266 75 PAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQ 153 (250)
T ss_pred ccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHH
Confidence 0001111 110 11110 010000 001123345999
Q ss_pred HHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEE
Q 005138 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (712)
Q Consensus 117 rv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~ 193 (712)
|++||+|++ ++||+|||+++||+.. ...+.+++.++. + +.|+|+|||+++.+...|++++++.+ |+++
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~------~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~~~~~i~~l~~-G~i~ 224 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPIS------TTKIEDLIHKLK-E-DYTIVIVTHNMQQATRVSKYTSFFLN-GEII 224 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHh-c-CCeEEEEECCHHHHHhhcCEEEEEEC-CeEE
Confidence 999999999 9999999999999998 999999999985 3 78999999999999888888888888 9999
Q ss_pred EecCccccc
Q 005138 194 DSVPKPQAH 202 (712)
Q Consensus 194 ~~g~~~e~~ 202 (712)
..|++++..
T Consensus 225 ~~g~~~~~~ 233 (250)
T PRK14266 225 ESGLTDQIF 233 (250)
T ss_pred EeCCHHHHH
Confidence 999877654
No 237
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.88 E-value=1.4e-22 Score=212.28 Aligned_cols=178 Identities=17% Similarity=0.173 Sum_probs=132.2
Q ss_pred cccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCC-----CCCeeeccCC
Q 005138 7 CCSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA-----FKGRSQTTKG 80 (712)
Q Consensus 7 ~~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p-----~sG~~~~t~g 80 (712)
+.+|++.|+++.|+ ..+++++++++..|+ +++|+|+|||||||||++|+|+. +| ++|++...+.
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~isl~i~~Ge------~~~l~G~nGsGKSTLlk~l~Gl~----~~~~~~~~~G~i~~~g~ 74 (259)
T PRK14260 5 IPAIKVKDLSFYYNTSKAIEGISMDIYRNK------VTAIIGPSGCGKSTFIKTLNRIS----ELEGPVKVEGVVDFFGQ 74 (259)
T ss_pred cceEEEEEEEEEECCeEeecceEEEEcCCC------EEEEECCCCCCHHHHHHHHHhhc----CcccCCccceEEEECCE
Confidence 45799999999995 457999999999999 99999999999999999999997 53 4787432211
Q ss_pred -ee--------eccccCC-------Cccchhccc--------------------------cCCC------cccccchhhH
Q 005138 81 -IW--------MARCAGI-------EPCTLIMDL--------------------------EGTD------GRERGEDDTA 112 (712)
Q Consensus 81 -i~--------~~~~~~~-------~~~~~v~d~--------------------------~g~~------~~~r~~~~~~ 112 (712)
+. ....+++ .+ ..+.+. .|+. ........+.
T Consensus 75 ~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~ 153 (259)
T PRK14260 75 NIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSG 153 (259)
T ss_pred eccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCH
Confidence 10 0001110 01 011110 0110 0001122345
Q ss_pred HHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceec-
Q 005138 113 FEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED- 188 (712)
Q Consensus 113 ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~- 188 (712)
.|+||++||+|++ ++|||||||++||+.. ...+.+.+.++.+ +.|+|++||+++.+...|++++++..
T Consensus 154 G~~qrv~laral~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~--~~tiii~tH~~~~i~~~~d~i~~l~~~ 225 (259)
T PRK14260 154 GQQQRLCIARALAIKPKVLLMDEPCSALDPIA------TMKVEELIHSLRS--ELTIAIVTHNMQQATRVSDFTAFFSTD 225 (259)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHH------HHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhcCeEEEEecc
Confidence 5999999999999 9999999999999998 9999999999853 58999999999999999999999972
Q ss_pred ---CCeEEEecCcccccC
Q 005138 189 ---IQKIWDSVPKPQAHM 203 (712)
Q Consensus 189 ---~G~I~~~g~~~e~~~ 203 (712)
.|+++..|++.+.+.
T Consensus 226 ~~~~G~i~~~~~~~~~~~ 243 (259)
T PRK14260 226 ESRIGQMVEFGVTTQIFS 243 (259)
T ss_pred CCCCceEEEeCCHHHHhc
Confidence 499999998877654
No 238
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.88 E-value=5.7e-23 Score=235.57 Aligned_cols=177 Identities=16% Similarity=0.217 Sum_probs=130.2
Q ss_pred EEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC---------
Q 005138 10 TQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (712)
Q Consensus 10 I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~--------- 79 (712)
|++.|+++.|+ ..+++++++++..|+ +++|+||||||||||||+|+|+.- .+|++|++...+
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge------~~~iiG~nGsGKSTLl~~l~Gl~~--~~p~~G~i~~~~~~~~~~~~~ 72 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGE------VLGILGRSGAGKSVLMHVLRGMDQ--YEPTSGRIIYHVALCEKCGYV 72 (520)
T ss_pred CEEEEEEEEECCeEeeeceeEEEcCCC------EEEEECCCCCCHHHHHHHHhhccc--CCCCceEEEEecccccccccc
Confidence 57899999995 357999999999999 999999999999999999999850 037888754320
Q ss_pred -------------C--e-------e---------eccccCC--C------ccchhcc-------ccCCCcc---------
Q 005138 80 -------------G--I-------W---------MARCAGI--E------PCTLIMD-------LEGTDGR--------- 104 (712)
Q Consensus 80 -------------g--i-------~---------~~~~~~~--~------~~~~v~d-------~~g~~~~--------- 104 (712)
| + . ....+++ . +...+.+ ..+....
T Consensus 73 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~ 152 (520)
T TIGR03269 73 ERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDL 152 (520)
T ss_pred ccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 0 0 0000111 0 0001111 0111100
Q ss_pred -----------cccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEe
Q 005138 105 -----------ERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVI 170 (712)
Q Consensus 105 -----------~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~Vt 170 (712)
......+..||||++||+|++ ++|||||||++||+.. ...+++++.++.++.|+|||+||
T Consensus 153 l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~l~~~~g~tviivt 226 (520)
T TIGR03269 153 IEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQT------AKLVHNALEEAVKASGISMVLTS 226 (520)
T ss_pred HHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHH------HHHHHHHHHHHHHhcCcEEEEEe
Confidence 011222344999999999999 9999999999999999 99999999998765689999999
Q ss_pred cCCCCcccccccccceecCCeEEEecCcccc
Q 005138 171 RDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (712)
Q Consensus 171 HDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~ 201 (712)
||++.+...|++++++.+ |+++..|++.+.
T Consensus 227 Hd~~~~~~~~d~i~~l~~-G~i~~~g~~~~~ 256 (520)
T TIGR03269 227 HWPEVIEDLSDKAIWLEN-GEIKEEGTPDEV 256 (520)
T ss_pred CCHHHHHHhcCEEEEEeC-CEEeeecCHHHH
Confidence 999999888999999988 999888776543
No 239
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.87 E-value=1.9e-22 Score=203.30 Aligned_cols=160 Identities=13% Similarity=0.128 Sum_probs=116.7
Q ss_pred EEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee------
Q 005138 10 TQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW------ 82 (712)
Q Consensus 10 I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~------ 82 (712)
|++.|+++.|+ ..+++++++++..|+ +++|+|+||||||||+++|+|+. +|++|++...+...
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~Ge------~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~ 70 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAGE------ALQVTGPNGSGKTTLLRILAGLS----PPLAGRVLLNGGPLDFQRDS 70 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEecccccHH
Confidence 47899999995 457999999999999 99999999999999999999999 89999854321100
Q ss_pred eccccC-------CCccchhccc-------------------cCCCc--ccccchhhHHHHHHHHHHHHHH---HHhhhc
Q 005138 83 MARCAG-------IEPCTLIMDL-------------------EGTDG--RERGEDDTAFEKQSALFALAVS---DIVLIN 131 (712)
Q Consensus 83 ~~~~~~-------~~~~~~v~d~-------------------~g~~~--~~r~~~~~~ferQrv~~A~Ala---~iLlLD 131 (712)
+...++ ..+...+.+. .|+.. .......+..|+||+++|+|++ +++|+|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 150 (201)
T cd03231 71 IARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILD 150 (201)
T ss_pred hhhheEEeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 001111 1111111111 11110 0011122345999999999999 999999
Q ss_pred cccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccce
Q 005138 132 MWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLR 186 (712)
Q Consensus 132 EP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll 186 (712)
|||++||+.. ...+.+.+.++.++ |.|+|+||||....+..+++.+.+
T Consensus 151 EPt~~LD~~~------~~~l~~~l~~~~~~-g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 151 EPTTALDKAG------VARFAEAMAGHCAR-GGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEecCchhhhhccceeEec
Confidence 9999999998 99999999988654 899999999998877777766543
No 240
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.87 E-value=3.8e-22 Score=203.55 Aligned_cols=167 Identities=16% Similarity=0.128 Sum_probs=125.3
Q ss_pred EEEEeeeeeecc---ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC------
Q 005138 10 TQLIDGDGTFNV---SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------ 80 (712)
Q Consensus 10 I~l~~l~k~y~~---~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g------ 80 (712)
|++.|+++.|.. .++++++|++..|+ +++|+|||||||||||++|+|+. +|++|++...+.
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge------~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~ 72 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGE------KVGIVGRTGSGKSSLLLALFRLV----ELSSGSILIDGVDISKIG 72 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCC------EEEEECCCCCCHHHHHHHHHcCC----CCCCCEEEECCEEhHhCC
Confidence 789999999942 47999999999999 99999999999999999999998 899998532211
Q ss_pred -------eee-ccccCCCccchhccc------------------cCCCcc-------------cccchhhHHHHHHHHHH
Q 005138 81 -------IWM-ARCAGIEPCTLIMDL------------------EGTDGR-------------ERGEDDTAFEKQSALFA 121 (712)
Q Consensus 81 -------i~~-~~~~~~~~~~~v~d~------------------~g~~~~-------------~r~~~~~~ferQrv~~A 121 (712)
+.+ .......+. .+.+. .++... ......+..|+||++||
T Consensus 73 ~~~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~la 151 (221)
T cd03244 73 LHDLRSRISIIPQDPVLFSG-TIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLA 151 (221)
T ss_pred HHHHhhhEEEECCCCccccc-hHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHH
Confidence 110 000000000 11111 011100 11123345599999999
Q ss_pred HHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecC
Q 005138 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (712)
Q Consensus 122 ~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~ 197 (712)
+|++ +++|+||||++||+.. +..+.+.+.++.+ +.|+|++||+++.+.. |++++++.+ |+++..|+
T Consensus 152 ral~~~p~llllDEP~~~LD~~~------~~~l~~~l~~~~~--~~tii~~sh~~~~~~~-~d~i~~l~~-g~~~~~~~ 220 (221)
T cd03244 152 RALLRKSKILVLDEATASVDPET------DALIQKTIREAFK--DCTVLTIAHRLDTIID-SDRILVLDK-GRVVEFDS 220 (221)
T ss_pred HHHhcCCCEEEEeCccccCCHHH------HHHHHHHHHHhcC--CCEEEEEeCCHHHHhh-CCEEEEEEC-CeEEecCC
Confidence 9999 9999999999999998 9999999999853 6899999999988875 899998888 99987764
No 241
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.1e-22 Score=211.73 Aligned_cols=175 Identities=13% Similarity=0.138 Sum_probs=129.1
Q ss_pred EEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccC-----CCCCeeeccC----
Q 005138 10 TQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD-----AFKGRSQTTK---- 79 (712)
Q Consensus 10 I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~-----p~sG~~~~t~---- 79 (712)
-++.|+++.|+ ..++++++|++..|+ +++|+||||||||||+++|+|+. + |++|++...+
T Consensus 6 ~~~~~l~~~~~~~~~l~~is~~i~~Ge------~~~I~G~nGsGKSTLl~~i~G~~----~~~~~~~~~G~i~~~g~~i~ 75 (251)
T PRK14244 6 ASVKNLNLWYGSKQILFDINLDIYKRE------VTAFIGPSGCGKSTFLRCFNRMN----DFVPNCKVKGELDIDGIDVY 75 (251)
T ss_pred EEeeeEEEEECCeeeeeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHHhhc----ccCCCCCcceEEEECCEehH
Confidence 47899999995 457999999999999 99999999999999999999997 4 3688743211
Q ss_pred -----------Ce-eeccccCCCcc------chh--------------------ccccCCCc------ccccchhhHHHH
Q 005138 80 -----------GI-WMARCAGIEPC------TLI--------------------MDLEGTDG------RERGEDDTAFEK 115 (712)
Q Consensus 80 -----------gi-~~~~~~~~~~~------~~v--------------------~d~~g~~~------~~r~~~~~~fer 115 (712)
++ ++.......+. .+. ++..|+.. .......+..|+
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 76 SVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQ 155 (251)
T ss_pred hcccchHHHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHH
Confidence 01 01111000010 000 01111110 001122344599
Q ss_pred HHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeE
Q 005138 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (712)
Q Consensus 116 Qrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I 192 (712)
||+++|+|++ ++||+||||++||+.. ...+.+.+.++. + |.|||+||||++.+...|++++++.+ |++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~-~-~~tiiiisH~~~~~~~~~d~i~~l~~-G~i 226 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVA------TNVIENLIQELK-K-NFTIIVVTHSMKQAKKVSDRVAFFQS-GRI 226 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhcCEEEEEEC-CEE
Confidence 9999999999 9999999999999998 999999999984 3 89999999999998888999999988 999
Q ss_pred EEecCcccccC
Q 005138 193 WDSVPKPQAHM 203 (712)
Q Consensus 193 ~~~g~~~e~~~ 203 (712)
...|++.+.+.
T Consensus 227 ~~~~~~~~~~~ 237 (251)
T PRK14244 227 VEYNTTQEIFK 237 (251)
T ss_pred EEeCCHHHHhc
Confidence 99888766543
No 242
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.87 E-value=1.7e-22 Score=230.57 Aligned_cols=174 Identities=14% Similarity=0.152 Sum_probs=132.1
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCC--CCCeeeccC------
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA--FKGRSQTTK------ 79 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p--~sG~~~~t~------ 79 (712)
+|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +| ++|++...+
T Consensus 1 ~l~i~~l~~~~~~~~il~~isl~i~~Ge------~~~liG~nGsGKSTLl~~i~G~~----~~~~~~G~i~~~g~~~~~~ 70 (500)
T TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGE------CVGLCGENGAGKSTLMKILSGVY----PHGTWDGEIYWSGSPLKAS 70 (500)
T ss_pred CEEEEeEEEEeCCeEeecceEEEEeCCc------EEEEECCCCCCHHHHHHHHhCCC----CCCCCCeEEEECCEECCCC
Confidence 378999999995 357999999999999 99999999999999999999998 65 688853221
Q ss_pred --------Ce-eeccccCCCccchh-----------------------------ccccCCCcc---cccchhhHHHHHHH
Q 005138 80 --------GI-WMARCAGIEPCTLI-----------------------------MDLEGTDGR---ERGEDDTAFEKQSA 118 (712)
Q Consensus 80 --------gi-~~~~~~~~~~~~~v-----------------------------~d~~g~~~~---~r~~~~~~ferQrv 118 (712)
++ ++.......+...+ ++..|+... ......+..||||+
T Consensus 71 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv 150 (500)
T TIGR02633 71 NIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLV 150 (500)
T ss_pred CHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHH
Confidence 11 01110000010011 111122111 11233456699999
Q ss_pred HHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEe
Q 005138 119 LFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (712)
Q Consensus 119 ~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~ 195 (712)
+||+|++ ++|||||||++||+.. ...+.+.+.++.+. |.|||+||||++.+...|++++++.+ |+++..
T Consensus 151 ~iA~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~l~~~-g~tviiitHd~~~~~~~~d~i~~l~~-G~i~~~ 222 (500)
T TIGR02633 151 EIAKALNKQARLLILDEPSSSLTEKE------TEILLDIIRDLKAH-GVACVYISHKLNEVKAVCDTICVIRD-GQHVAT 222 (500)
T ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCcHHHHHHhCCEEEEEeC-CeEeee
Confidence 9999999 9999999999999999 99999999998754 99999999999999889999999988 999988
Q ss_pred cCccc
Q 005138 196 VPKPQ 200 (712)
Q Consensus 196 g~~~e 200 (712)
+++++
T Consensus 223 ~~~~~ 227 (500)
T TIGR02633 223 KDMST 227 (500)
T ss_pred cCccc
Confidence 87654
No 243
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.87 E-value=1.5e-22 Score=231.40 Aligned_cols=176 Identities=11% Similarity=0.145 Sum_probs=133.0
Q ss_pred ccEEEEeeeeeec----cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccC-CCCCeeeccC---
Q 005138 8 CSTQLIDGDGTFN----VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD-AFKGRSQTTK--- 79 (712)
Q Consensus 8 ~~I~l~~l~k~y~----~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~-p~sG~~~~t~--- 79 (712)
.+|++.|+++.|+ ..++++++|++..|+ +++|+||||||||||||+|+|+. + |++|++...+
T Consensus 258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge------~~~l~G~NGsGKSTLlk~i~Gl~----~~~~~G~i~~~g~~~ 327 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIKRVDDVSFSLRRGE------ILGIAGLVGAGRTELVQCLFGAY----PGRWEGEIFIDGKPV 327 (506)
T ss_pred ceEEEecCccccccccccccccceeeEEcCCc------EEEEeCCCCCCHHHHHHHHhCCC----CCCCCcEEEECCEEC
Confidence 3699999999993 247999999999999 99999999999999999999998 7 4889854221
Q ss_pred -----------Ce-eecccc---CCCccchhccc------------------------------cCCCc---ccccchhh
Q 005138 80 -----------GI-WMARCA---GIEPCTLIMDL------------------------------EGTDG---RERGEDDT 111 (712)
Q Consensus 80 -----------gi-~~~~~~---~~~~~~~v~d~------------------------------~g~~~---~~r~~~~~ 111 (712)
++ ++.... ...+...+.+. .|+.. .......+
T Consensus 328 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 407 (506)
T PRK13549 328 KIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLS 407 (506)
T ss_pred CCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCC
Confidence 00 001110 00011111110 11110 01112334
Q ss_pred HHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceec
Q 005138 112 AFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (712)
Q Consensus 112 ~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~ 188 (712)
.+||||++||+|++ ++|||||||++||+.. .+.+++++.++.++ |+|||+||||++.+...|++++++.+
T Consensus 408 gG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~l~~~-g~tvi~~sHd~~~~~~~~d~v~~l~~ 480 (506)
T PRK13549 408 GGNQQKAVLAKCLLLNPKILILDEPTRGIDVGA------KYEIYKLINQLVQQ-GVAIIVISSELPEVLGLSDRVLVMHE 480 (506)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhH------HHHHHHHHHHHHHC-CCEEEEECCCHHHHHHhCCEEEEEEC
Confidence 55999999999999 9999999999999998 99999999998765 99999999999999989999999988
Q ss_pred CCeEEEecCcccc
Q 005138 189 IQKIWDSVPKPQA 201 (712)
Q Consensus 189 ~G~I~~~g~~~e~ 201 (712)
|+++..++++++
T Consensus 481 -G~i~~~~~~~~~ 492 (506)
T PRK13549 481 -GKLKGDLINHNL 492 (506)
T ss_pred -CEEEEEeccccC
Confidence 999998877654
No 244
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.87 E-value=2.7e-22 Score=203.12 Aligned_cols=153 Identities=13% Similarity=0.061 Sum_probs=113.6
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCe-e---e
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGI-W---M 83 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi-~---~ 83 (712)
+|++.|+++.|+ ..++++++++++.|+ +++|+||||||||||+++|+|+. +|++|++...+.. . .
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge------~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~ 71 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGE------ALVLTGPNGSGKTTLLRLIAGLL----PPAAGTIKLDGGDIDDPDV 71 (207)
T ss_pred EEEEEeEEEEECCeEEEeceEEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEeCcchhh
Confidence 699999999995 457999999999999 99999999999999999999998 8999985332110 0 0
Q ss_pred ccccC-------CCccchhccc---------------------cCCCc--ccccchhhHHHHHHHHHHHHHH---HHhhh
Q 005138 84 ARCAG-------IEPCTLIMDL---------------------EGTDG--RERGEDDTAFEKQSALFALAVS---DIVLI 130 (712)
Q Consensus 84 ~~~~~-------~~~~~~v~d~---------------------~g~~~--~~r~~~~~~ferQrv~~A~Ala---~iLlL 130 (712)
....+ ..+...+.+. .|+.. .......+..|+||+++|+|++ ++||+
T Consensus 72 ~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 151 (207)
T PRK13539 72 AEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWIL 151 (207)
T ss_pred HhhcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 00111 0011111111 01110 0111223445999999999999 99999
Q ss_pred ccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccc
Q 005138 131 NMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPL 178 (712)
Q Consensus 131 DEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~ 178 (712)
||||++||+.. ...+.+.+.++.++ |+|+|+|||+++.+..
T Consensus 152 DEPt~~LD~~~------~~~l~~~l~~~~~~-~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 152 DEPTAALDAAA------VALFAELIRAHLAQ-GGIVIAATHIPLGLPG 192 (207)
T ss_pred eCCcccCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCchhhcc
Confidence 99999999998 99999999988665 9999999999988774
No 245
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.87 E-value=1.1e-22 Score=209.24 Aligned_cols=163 Identities=15% Similarity=0.116 Sum_probs=121.4
Q ss_pred cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCC----CCCeeeccC-----------Cee-eccc
Q 005138 23 GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA----FKGRSQTTK-----------GIW-MARC 86 (712)
Q Consensus 23 ~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p----~sG~~~~t~-----------gi~-~~~~ 86 (712)
++++++++++.|+ +++|+||||||||||+|+|+|+. +| ++|++...+ ++. +...
T Consensus 1 ~l~~vs~~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~----~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 70 (230)
T TIGR02770 1 LVQDLNLSLKRGE------VLALVGESGSGKSLTCLAILGLL----PPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQN 70 (230)
T ss_pred CccceeEEEcCCC------EEEEECCCCCCHHHHHHHHhcCC----CCccCccccEEEECCEechhhhhhhheeEEEecC
Confidence 3689999999999 99999999999999999999999 77 889853221 110 1000
Q ss_pred cC--CCccchhc-------ccc------------------CCCc-----ccccchhhHHHHHHHHHHHHHH---HHhhhc
Q 005138 87 AG--IEPCTLIM-------DLE------------------GTDG-----RERGEDDTAFEKQSALFALAVS---DIVLIN 131 (712)
Q Consensus 87 ~~--~~~~~~v~-------d~~------------------g~~~-----~~r~~~~~~ferQrv~~A~Ala---~iLlLD 131 (712)
.. +.+...+. ... |+.. .......+..|+||++||+|++ ++||||
T Consensus 71 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 71 PRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred chhhcCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 00 11101100 000 1110 1111223455999999999999 999999
Q ss_pred cccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCccccc
Q 005138 132 MWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (712)
Q Consensus 132 EP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~ 202 (712)
|||++||+.. ...+.+.+.++.++.|+|||++||+++.+...|++++++.+ |++...|++++.+
T Consensus 151 EPt~~LD~~~------~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~-G~i~~~~~~~~~~ 214 (230)
T TIGR02770 151 EPTTDLDVVN------QARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDD-GRIVERGTVKEIF 214 (230)
T ss_pred CCccccCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEeCCHHHHH
Confidence 9999999998 99999999998765589999999999998888999999988 9999998876654
No 246
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.7e-22 Score=214.67 Aligned_cols=177 Identities=16% Similarity=0.217 Sum_probs=131.0
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccC-----CCCCeeeccCC-
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD-----AFKGRSQTTKG- 80 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~-----p~sG~~~~t~g- 80 (712)
.+|++.++++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. + |++|++...+.
T Consensus 38 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge------~~~l~G~nGsGKSTLl~~L~Gl~----~~~p~~~~~G~I~~~g~~ 107 (286)
T PRK14275 38 PHVVAKNFSIYYGEFEAVKKVNADILSKY------VTAIIGPSGCGKSTFLRAINRMN----DLIPSCHTTGALMFDGED 107 (286)
T ss_pred eEEEEeeeEEEECCEEEEeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHhccc----ccCCCCCCceEEEECCEE
Confidence 4699999999995 347999999999999 99999999999999999999985 3 38887432210
Q ss_pred ee--------eccccCC---Cccc---hhcc-------ccCCCc-------------------------ccccchhhHHH
Q 005138 81 IW--------MARCAGI---EPCT---LIMD-------LEGTDG-------------------------RERGEDDTAFE 114 (712)
Q Consensus 81 i~--------~~~~~~~---~~~~---~v~d-------~~g~~~-------------------------~~r~~~~~~fe 114 (712)
+. +...+++ .+.. .+.+ ..+... .......+..|
T Consensus 108 i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq 187 (286)
T PRK14275 108 IYGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQ 187 (286)
T ss_pred hhhcccchHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHH
Confidence 00 0111111 0000 1111 001100 00112234459
Q ss_pred HHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCe
Q 005138 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (712)
Q Consensus 115 rQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~ 191 (712)
+||++||+|++ ++|||||||++||+.. ...+.+.+.++.+ +.|||+||||++.+...|++++++.+ |+
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~------~~~l~~~L~~~~~--~~tvIivsH~~~~~~~~~d~i~~L~~-G~ 258 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKA------TAKIEDLIQELRG--SYTIMIVTHNMQQASRVSDYTMFFYE-GV 258 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHhc--CCeEEEEeCCHHHHHHhCCEEEEEEC-CE
Confidence 99999999999 9999999999999998 9999999998853 58999999999999888999999988 99
Q ss_pred EEEecCcccccC
Q 005138 192 IWDSVPKPQAHM 203 (712)
Q Consensus 192 I~~~g~~~e~~~ 203 (712)
++..|++.+++.
T Consensus 259 i~~~g~~~~~~~ 270 (286)
T PRK14275 259 LVEHAPTAQLFT 270 (286)
T ss_pred EEEeCCHHHHHh
Confidence 999988766543
No 247
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.87 E-value=1.7e-22 Score=233.42 Aligned_cols=173 Identities=12% Similarity=0.096 Sum_probs=130.4
Q ss_pred ccEEEEeeeeeec--cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC--e-e
Q 005138 8 CSTQLIDGDGTFN--VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG--I-W 82 (712)
Q Consensus 8 ~~I~l~~l~k~y~--~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g--i-~ 82 (712)
+||++.|+++.|+ ..++++++|+++.|+ +++|+|||||||||||++|+|+. +|++|++....+ + +
T Consensus 5 ~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge------~~~iiG~NGsGKSTLlk~i~G~~----~p~~G~i~~~~~~~i~~ 74 (556)
T PRK11819 5 YIYTMNRVSKVVPPKKQILKDISLSFFPGA------KIGVLGLNGAGKSTLLRIMAGVD----KEFEGEARPAPGIKVGY 74 (556)
T ss_pred EEEEEeeEEEEeCCCCeeeeCceEEECCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCceEEecCCCEEEE
Confidence 4799999999996 357999999999999 99999999999999999999998 899998643321 1 1
Q ss_pred eccccCCCccchhcc-------------------------------------------------------------ccCC
Q 005138 83 MARCAGIEPCTLIMD-------------------------------------------------------------LEGT 101 (712)
Q Consensus 83 ~~~~~~~~~~~~v~d-------------------------------------------------------------~~g~ 101 (712)
+.......+...+.+ ..|+
T Consensus 75 v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 154 (556)
T PRK11819 75 LPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRC 154 (556)
T ss_pred EecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCC
Confidence 111111111101100 0111
Q ss_pred Cc-ccccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcc
Q 005138 102 DG-RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (712)
Q Consensus 102 ~~-~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~ 177 (712)
.. .......+..||||++||+|++ ++|||||||++||+.. ...+.+.+.++ +.|||+||||++.+.
T Consensus 155 ~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~------~~~l~~~L~~~----~~tviiisHd~~~~~ 224 (556)
T PRK11819 155 PPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAES------VAWLEQFLHDY----PGTVVAVTHDRYFLD 224 (556)
T ss_pred CcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHH------HHHHHHHHHhC----CCeEEEEeCCHHHHH
Confidence 10 1112334566999999999999 9999999999999998 88899888876 249999999999999
Q ss_pred cccccccceecCCeEE-EecCcccc
Q 005138 178 LENLEPVLREDIQKIW-DSVPKPQA 201 (712)
Q Consensus 178 ~~~~~~~ll~~~G~I~-~~g~~~e~ 201 (712)
..|++++++.+ |+++ ..|+.++.
T Consensus 225 ~~~d~i~~l~~-g~i~~~~g~~~~~ 248 (556)
T PRK11819 225 NVAGWILELDR-GRGIPWEGNYSSW 248 (556)
T ss_pred hhcCeEEEEeC-CEEEEecCCHHHH
Confidence 88999999998 9986 56765543
No 248
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.8e-22 Score=213.47 Aligned_cols=176 Identities=17% Similarity=0.181 Sum_probs=131.8
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCC-----CCCeeeccCC-
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA-----FKGRSQTTKG- 80 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p-----~sG~~~~t~g- 80 (712)
++|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +| ++|++...+-
T Consensus 20 ~~l~i~nl~~~~~~~~il~~vs~~i~~Ge------~~~I~G~nGsGKSTLl~~l~Gl~----~p~~~~~~~G~i~~~g~~ 89 (276)
T PRK14271 20 PAMAAVNLTLGFAGKTVLDQVSMGFPARA------VTSLMGPTGSGKTTFLRTLNRMN----DKVSGYRYSGDVLLGGRS 89 (276)
T ss_pred cEEEEeeEEEEECCEEEeeeeEEEEcCCc------EEEEECCCCCCHHHHHHHHhccC----CcCCCCCCceEEEECCEE
Confidence 4789999999995 457999999999999 99999999999999999999998 65 5777432210
Q ss_pred -------------e-eeccccCCCccchhccc--------------------------cCCCc------ccccchhhHHH
Q 005138 81 -------------I-WMARCAGIEPCTLIMDL--------------------------EGTDG------RERGEDDTAFE 114 (712)
Q Consensus 81 -------------i-~~~~~~~~~~~~~v~d~--------------------------~g~~~------~~r~~~~~~fe 114 (712)
+ ++.......+ ..+.+. .|+.. .......+..|
T Consensus 90 i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq 168 (276)
T PRK14271 90 IFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQ 168 (276)
T ss_pred ccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHH
Confidence 0 0100000011 011110 01110 00112234559
Q ss_pred HHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCe
Q 005138 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (712)
Q Consensus 115 rQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~ 191 (712)
+||++||+|++ ++||+||||++||+.. .+.+++.+.++.+ +.|||+||||++.+...|++++++.+ |+
T Consensus 169 ~qrl~LAral~~~p~lllLDEPt~~LD~~~------~~~l~~~L~~~~~--~~tiiivsH~~~~~~~~~dri~~l~~-G~ 239 (276)
T PRK14271 169 QQLLCLARTLAVNPEVLLLDEPTSALDPTT------TEKIEEFIRSLAD--RLTVIIVTHNLAQAARISDRAALFFD-GR 239 (276)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEEC-CE
Confidence 99999999999 9999999999999998 9999999999864 48999999999998888999999998 99
Q ss_pred EEEecCcccccC
Q 005138 192 IWDSVPKPQAHM 203 (712)
Q Consensus 192 I~~~g~~~e~~~ 203 (712)
+...|++.+++.
T Consensus 240 i~~~g~~~~~~~ 251 (276)
T PRK14271 240 LVEEGPTEQLFS 251 (276)
T ss_pred EEEeCCHHHHHh
Confidence 999988766543
No 249
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.87 E-value=1.3e-22 Score=194.38 Aligned_cols=169 Identities=23% Similarity=0.260 Sum_probs=129.0
Q ss_pred cEEEEeeeeeecc-----ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC---
Q 005138 9 STQLIDGDGTFNV-----SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG--- 80 (712)
Q Consensus 9 ~I~l~~l~k~y~~-----~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g--- 80 (712)
.|++.++++..+. .+|++|++.|..|+ -++|+||+||||||||-+|+|+. +|++|++...+.
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge------~vaiVG~SGSGKSTLl~vlAGLd----~~ssGeV~l~G~~L~ 75 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGE------TVAIVGPSGSGKSTLLAVLAGLD----DPSSGEVRLLGQPLH 75 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCc------eEEEEcCCCCcHHhHHHHHhcCC----CCCCceEEEcCcchh
Confidence 6889999988842 36899999999999 99999999999999999999999 999998532211
Q ss_pred --------eeeccccC--------------CCccchhccccCC--Cccc-c-----------------cchhhHHHHHHH
Q 005138 81 --------IWMARCAG--------------IEPCTLIMDLEGT--DGRE-R-----------------GEDDTAFEKQSA 118 (712)
Q Consensus 81 --------i~~~~~~~--------------~~~~~~v~d~~g~--~~~~-r-----------------~~~~~~ferQrv 118 (712)
....+.++ .+|..+.+...|- .... + ....+..|+|||
T Consensus 76 ~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRV 155 (228)
T COG4181 76 KLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRV 155 (228)
T ss_pred hcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHH
Confidence 00111111 1233333333331 1100 0 011233499999
Q ss_pred HHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEe
Q 005138 119 LFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (712)
Q Consensus 119 ~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~ 195 (712)
+||+|++ ++|+-||||.+||... -..|.+++..+.++.|+|+++||||...+.+ |+|.+-+.+ |+||.+
T Consensus 156 AiARAfa~~P~vLfADEPTGNLD~~T------g~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~-G~l~~~ 227 (228)
T COG4181 156 ALARAFAGRPDVLFADEPTGNLDRAT------GDKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRLRS-GRLVED 227 (228)
T ss_pred HHHHHhcCCCCEEeccCCCCCcchhH------HHHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeeeec-ceeccC
Confidence 9999999 9999999999999998 8899999999998899999999999998775 899888888 999854
No 250
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.87 E-value=2.9e-22 Score=205.45 Aligned_cols=170 Identities=12% Similarity=0.077 Sum_probs=124.9
Q ss_pred cEEEEeeeeeec-----cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccC---CCCCeeeccC-
Q 005138 9 STQLIDGDGTFN-----VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD---AFKGRSQTTK- 79 (712)
Q Consensus 9 ~I~l~~l~k~y~-----~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~---p~sG~~~~t~- 79 (712)
.+.+.|++..|. ..+++++++++..|+ +++|+||||||||||+++|+|+. + |++|++...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge------~~~l~G~nGsGKSTLlk~l~G~~----~~~~~~~G~i~~~g~ 72 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQ------VMAILGSSGSGKTTLLDAISGRV----EGGGTTSGQILFNGQ 72 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCe------EEEEECCCCCCHHHHHHHHhCcc----CCCCCCceEEEECCE
Confidence 367889999994 247999999999999 99999999999999999999998 7 7888743211
Q ss_pred ---------Ceee-ccccCCCccchhccc-------cCC---Ccc---------------------cccchhhHHHHHHH
Q 005138 80 ---------GIWM-ARCAGIEPCTLIMDL-------EGT---DGR---------------------ERGEDDTAFEKQSA 118 (712)
Q Consensus 80 ---------gi~~-~~~~~~~~~~~v~d~-------~g~---~~~---------------------~r~~~~~~ferQrv 118 (712)
++.+ .......+...+.+. .+. ... ......+..|+||+
T Consensus 73 ~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl 152 (226)
T cd03234 73 PRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRV 152 (226)
T ss_pred ECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHH
Confidence 1111 111011111111110 000 000 00112234499999
Q ss_pred HHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCC-CCcccccccccceecCCeEEE
Q 005138 119 LFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDK-TRTPLENLEPVLREDIQKIWD 194 (712)
Q Consensus 119 ~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl-~~~~~~~~~~~ll~~~G~I~~ 194 (712)
++|++++ +++|+||||++||+.. ...+.+.+.++.+. |.|+|++||++ +.+...|++++++.+ |+++.
T Consensus 153 ~laral~~~p~illlDEP~~gLD~~~------~~~~~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~ 224 (226)
T cd03234 153 SIAVQLLWDPKVLILDEPTSGLDSFT------ALNLVSTLSQLARR-NRIVILTIHQPRSDLFRLFDRILLLSS-GEIVY 224 (226)
T ss_pred HHHHHHHhCCCEEEEeCCCcCCCHHH------HHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEe
Confidence 9999999 9999999999999998 99999999998754 89999999999 478888999999988 99986
Q ss_pred ec
Q 005138 195 SV 196 (712)
Q Consensus 195 ~g 196 (712)
.|
T Consensus 225 ~g 226 (226)
T cd03234 225 SG 226 (226)
T ss_pred cC
Confidence 54
No 251
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.87 E-value=1e-22 Score=234.00 Aligned_cols=178 Identities=10% Similarity=0.111 Sum_probs=134.0
Q ss_pred ccEEEEeeeeeec------------cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCee
Q 005138 8 CSTQLIDGDGTFN------------VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS 75 (712)
Q Consensus 8 ~~I~l~~l~k~y~------------~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~ 75 (712)
++|++.|+++.|+ ..+++++++++..|+ +++|+||||||||||||+|+|+. |++|++
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge------~~~i~G~nGsGKSTLlk~l~Gl~-----~~~G~i 342 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGE------TLGLVGESGSGKSTTGLALLRLI-----NSQGEI 342 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCC------EEEEECCCCCCHHHHHHHHhCcC-----CCCcEE
Confidence 4699999999994 247999999999999 99999999999999999999998 478885
Q ss_pred eccCC-ee---------eccccCC---------Cccchhccc---------------------------cCCCc---ccc
Q 005138 76 QTTKG-IW---------MARCAGI---------EPCTLIMDL---------------------------EGTDG---RER 106 (712)
Q Consensus 76 ~~t~g-i~---------~~~~~~~---------~~~~~v~d~---------------------------~g~~~---~~r 106 (712)
...+. +. +...+++ .+...+.+. .|+.. ...
T Consensus 343 ~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 422 (529)
T PRK15134 343 WFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRY 422 (529)
T ss_pred EECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcC
Confidence 32210 00 0001111 111111110 11110 001
Q ss_pred cchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccc
Q 005138 107 GEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEP 183 (712)
Q Consensus 107 ~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~ 183 (712)
....+..||||++||+|++ ++|||||||++||+.. ...+++++.++.++.|.|||+||||++.+...|+++
T Consensus 423 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i 496 (529)
T PRK15134 423 PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTV------QAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQV 496 (529)
T ss_pred CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHH------HHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeE
Confidence 1223445999999999999 9999999999999999 999999999997655899999999999998889999
Q ss_pred cceecCCeEEEecCcccccC
Q 005138 184 VLREDIQKIWDSVPKPQAHM 203 (712)
Q Consensus 184 ~ll~~~G~I~~~g~~~e~~~ 203 (712)
+++.+ |+++..|++.+++.
T Consensus 497 ~~l~~-G~i~~~~~~~~~~~ 515 (529)
T PRK15134 497 IVLRQ-GEVVEQGDCERVFA 515 (529)
T ss_pred EEEEC-CEEEEEcCHHHHhc
Confidence 99998 99999988766654
No 252
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=2.4e-22 Score=230.90 Aligned_cols=172 Identities=13% Similarity=0.046 Sum_probs=130.1
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC--e-eec
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG--I-WMA 84 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g--i-~~~ 84 (712)
||++.|+++.|+ ..++++++|++..|+ +++|+||||||||||||+|+|+. +|++|++...+. + ++.
T Consensus 1 ml~i~~ls~~~~~~~il~~vsl~i~~Ge------~~~liG~NGsGKSTLl~~l~Gl~----~p~~G~i~~~~~~~i~~~~ 70 (530)
T PRK15064 1 MLSTANITMQFGAKPLFENISVKFGGGN------RYGLIGANGCGKSTFMKILGGDL----EPSAGNVSLDPNERLGKLR 70 (530)
T ss_pred CEEEEEEEEEeCCcEeEeCCEEEECCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCceEEecCCCEEEEEe
Confidence 489999999995 457999999999999 99999999999999999999999 899998654321 1 111
Q ss_pred cccCCCccch---------------------------------------------------------hccccCCCcc---
Q 005138 85 RCAGIEPCTL---------------------------------------------------------IMDLEGTDGR--- 104 (712)
Q Consensus 85 ~~~~~~~~~~---------------------------------------------------------v~d~~g~~~~--- 104 (712)
......+... +++..|+...
T Consensus 71 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 150 (530)
T PRK15064 71 QDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHY 150 (530)
T ss_pred ccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhc
Confidence 1100000000 0111222211
Q ss_pred cccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccc
Q 005138 105 ERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENL 181 (712)
Q Consensus 105 ~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~ 181 (712)
......+..||||++||+|++ ++|||||||++||+.. ...+.+.+.+ .|.|||+||||++.+...|+
T Consensus 151 ~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~------~~~l~~~l~~----~~~tiiivsHd~~~~~~~~d 220 (530)
T PRK15064 151 GLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINT------IRWLEDVLNE----RNSTMIIISHDRHFLNSVCT 220 (530)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHH------HHHHHHHHHh----CCCeEEEEeCCHHHHHhhcc
Confidence 112344567999999999999 9999999999999998 8888888753 38999999999999988999
Q ss_pred cccceecCCeE-EEecCcccc
Q 005138 182 EPVLREDIQKI-WDSVPKPQA 201 (712)
Q Consensus 182 ~~~ll~~~G~I-~~~g~~~e~ 201 (712)
+++++.+ |++ +..|++.+.
T Consensus 221 ~i~~l~~-g~i~~~~g~~~~~ 240 (530)
T PRK15064 221 HMADLDY-GELRVYPGNYDEY 240 (530)
T ss_pred eEEEEeC-CEEEEecCCHHHH
Confidence 9999998 998 467776554
No 253
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.87 E-value=1.6e-22 Score=230.39 Aligned_cols=171 Identities=18% Similarity=0.198 Sum_probs=129.0
Q ss_pred Eeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-----------
Q 005138 13 IDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG----------- 80 (712)
Q Consensus 13 ~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g----------- 80 (712)
.|+++.|+ ..+++++++++..|+ +++|+||||||||||||+|+|+. +|++|++...+.
T Consensus 2 ~nl~~~~~~~~il~~vs~~i~~Ge------~~~liG~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~~~~~~ 71 (491)
T PRK10982 2 SNISKSFPGVKALDNVNLKVRPHS------IHALMGENGAGKSTLLKCLFGIY----QKDSGSILFQGKEIDFKSSKEAL 71 (491)
T ss_pred CceEEEeCCEEeeeeeeEEEcCCc------EEEEECCCCCCHHHHHHHHcCCC----CCCceEEEECCEECCCCCHHHHH
Confidence 57888895 357999999999999 99999999999999999999999 899998542211
Q ss_pred ---e-eeccccCCCccchhcccc----------------------------CCCc--ccccchhhHHHHHHHHHHHHHH-
Q 005138 81 ---I-WMARCAGIEPCTLIMDLE----------------------------GTDG--RERGEDDTAFEKQSALFALAVS- 125 (712)
Q Consensus 81 ---i-~~~~~~~~~~~~~v~d~~----------------------------g~~~--~~r~~~~~~ferQrv~~A~Ala- 125 (712)
+ ++.......+...+.+.. |+.. .......+..||||++||+|++
T Consensus 72 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 72 ENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred hCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHh
Confidence 1 111100011111111110 1100 0011223445999999999999
Q ss_pred --HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccc
Q 005138 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (712)
Q Consensus 126 --~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~ 201 (712)
++|||||||++||+.. ...+.+.+.++.+. |.|+|+||||++.+...|++++++.+ |+++..+++.+.
T Consensus 152 ~p~lllLDEPt~~LD~~~------~~~l~~~l~~l~~~-g~tvii~tH~~~~~~~~~d~i~~l~~-G~i~~~~~~~~~ 221 (491)
T PRK10982 152 NAKIVIMDEPTSSLTEKE------VNHLFTIIRKLKER-GCGIVYISHKMEEIFQLCDEITILRD-GQWIATQPLAGL 221 (491)
T ss_pred CCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhCCEEEEEEC-CEEEeecChhhC
Confidence 9999999999999998 99999999998754 89999999999999888999999988 999998887554
No 254
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.87 E-value=2e-22 Score=205.87 Aligned_cols=165 Identities=19% Similarity=0.193 Sum_probs=121.3
Q ss_pred EEEEeeeeeec-----cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee--
Q 005138 10 TQLIDGDGTFN-----VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW-- 82 (712)
Q Consensus 10 I~l~~l~k~y~-----~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~-- 82 (712)
|++.|+++.|+ ..++++++|++..|+ +++|+||||||||||+++|+|+. +|++|++...+...
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~------~~~I~G~nGsGKStLl~~l~G~~----~~~~G~i~~~g~~~~~ 71 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGE------IVILTGPSGSGKTTLLTLIGGLR----SVQEGSLKVLGQELYG 71 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEEhHh
Confidence 78899999995 347999999999999 99999999999999999999998 89999854322110
Q ss_pred --------eccccCC-------Cccchhc-------ccc-------------------CCCcc--cccchhhHHHHHHHH
Q 005138 83 --------MARCAGI-------EPCTLIM-------DLE-------------------GTDGR--ERGEDDTAFEKQSAL 119 (712)
Q Consensus 83 --------~~~~~~~-------~~~~~v~-------d~~-------------------g~~~~--~r~~~~~~ferQrv~ 119 (712)
+...+++ .+...+. +.. |+... ......+..|+||++
T Consensus 72 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~ 151 (220)
T TIGR02982 72 ASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVA 151 (220)
T ss_pred cCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHH
Confidence 0011110 0100110 100 11000 000112334999999
Q ss_pred HHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeE
Q 005138 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (712)
Q Consensus 120 ~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I 192 (712)
||++++ +++|+|||+++||+.. ...+.+.+.++.++.++|+|++|||++. ...|++++++.+ |++
T Consensus 152 laral~~~p~illlDEP~~~LD~~~------~~~l~~~l~~~~~~~~~tii~~sh~~~~-~~~~d~v~~l~~-g~~ 219 (220)
T TIGR02982 152 IARALVHRPKLVLADEPTAALDSKS------GRDVVELMQKLAREQGCTILIVTHDNRI-LDVADRIVHMED-GKL 219 (220)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCHHH------HHHHHHHHHHHHHHcCCEEEEEeCCHHH-HhhCCEEEEEEC-CEE
Confidence 999999 9999999999999998 9999999999876458999999999984 567999998887 875
No 255
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.87 E-value=2.3e-22 Score=230.08 Aligned_cols=174 Identities=12% Similarity=0.161 Sum_probs=131.9
Q ss_pred ccEEEEeeeeeeccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC--------
Q 005138 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (712)
Q Consensus 8 ~~I~l~~l~k~y~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~-------- 79 (712)
.+|++.|+++.|+. ++++++|++..|+ +++|+||||||||||||+|+|+. +|++|++...+
T Consensus 264 ~~l~~~~l~~~~~~-~l~~isl~i~~Ge------~~~l~G~NGsGKSTLlk~i~Gl~----~p~~G~I~~~g~~~~~~~~ 332 (510)
T PRK09700 264 TVFEVRNVTSRDRK-KVRDISFSVCRGE------ILGFAGLVGSGRTELMNCLFGVD----KRAGGEIRLNGKDISPRSP 332 (510)
T ss_pred cEEEEeCccccCCC-cccceeEEEcCCc------EEEEECCCCCCHHHHHHHHhCCC----cCCCCeEEECCEECCCCCH
Confidence 36999999998753 7999999999999 99999999999999999999999 89999853221
Q ss_pred ------Ce-eeccc---cCCCccchhccc----------------------------------cCCC-c--ccccchhhH
Q 005138 80 ------GI-WMARC---AGIEPCTLIMDL----------------------------------EGTD-G--RERGEDDTA 112 (712)
Q Consensus 80 ------gi-~~~~~---~~~~~~~~v~d~----------------------------------~g~~-~--~~r~~~~~~ 112 (712)
++ ++... ....+...+.+. .|+. . .......+.
T Consensus 333 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 412 (510)
T PRK09700 333 LDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSG 412 (510)
T ss_pred HHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCCh
Confidence 11 11110 011111111111 0110 0 001122345
Q ss_pred HHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecC
Q 005138 113 FEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDI 189 (712)
Q Consensus 113 ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~ 189 (712)
+||||++||+|++ ++|||||||++||+.. ...+++++.++.++ |.|||+||||++.+...|++++++.+
T Consensus 413 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~------~~~l~~~l~~l~~~-g~tvi~vsHd~~~~~~~~d~i~~l~~- 484 (510)
T PRK09700 413 GNQQKVLISKWLCCCPEVIIFDEPTRGIDVGA------KAEIYKVMRQLADD-GKVILMVSSELPEIITVCDRIAVFCE- 484 (510)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCcCHHH------HHHHHHHHHHHHHC-CCEEEEEcCCHHHHHhhCCEEEEEEC-
Confidence 5999999999999 9999999999999998 99999999998764 99999999999999889999999988
Q ss_pred CeEEEecCccc
Q 005138 190 QKIWDSVPKPQ 200 (712)
Q Consensus 190 G~I~~~g~~~e 200 (712)
|+++..++..+
T Consensus 485 G~i~~~~~~~~ 495 (510)
T PRK09700 485 GRLTQILTNRD 495 (510)
T ss_pred CEEEEEecCcc
Confidence 99988776534
No 256
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.87 E-value=2.8e-22 Score=190.16 Aligned_cols=177 Identities=16% Similarity=0.146 Sum_probs=135.1
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-eee---
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IWM--- 83 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~~--- 83 (712)
.|+++++++.|+ ..+|.+++++...|+ .+.++||+|+||||||+.|+-+. -|.+|+....+. .-+
T Consensus 2 sirv~~in~~yg~~q~lfdi~l~~~~ge------tlvllgpsgagkssllr~lnlle----~p~sg~l~ia~~~fd~s~~ 71 (242)
T COG4161 2 SIQLNGINCFYGAHQALFDITLDCPEGE------TLVLLGPSGAGKSSLLRVLNLLE----MPRSGTLNIAGNHFDFSKT 71 (242)
T ss_pred ceEEcccccccccchheeeeeecCCCCC------EEEEECCCCCchHHHHHHHHHHh----CCCCCeEEecccccccccC
Confidence 599999999996 457999999999998 99999999999999999999998 789998432221 111
Q ss_pred ---------ccccC-------CCccchh--------ccccCCCcccccch--------------------hhHHHHHHHH
Q 005138 84 ---------ARCAG-------IEPCTLI--------MDLEGTDGRERGED--------------------DTAFEKQSAL 119 (712)
Q Consensus 84 ---------~~~~~-------~~~~~~v--------~d~~g~~~~~r~~~--------------------~~~ferQrv~ 119 (712)
++..| .-+.+.| ..+.|++..+...+ .++.|+||++
T Consensus 72 ~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrva 151 (242)
T COG4161 72 PSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVA 151 (242)
T ss_pred ccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHH
Confidence 11111 0112222 12234432221100 1223999999
Q ss_pred HHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEec
Q 005138 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 120 ~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g 196 (712)
||+|+. ++|++||||+.|||+- ..++.++++++... |.|-++|||..+.+...+.+++.|++ |+|+..|
T Consensus 152 iaralmmkpqvllfdeptaaldpei------taqvv~iikel~~t-gitqvivthev~va~k~as~vvyme~-g~ive~g 223 (242)
T COG4161 152 IARALMMEPQVLLFDEPTAALDPEI------TAQIVSIIKELAET-GITQVIVTHEVEVARKTASRVVYMEN-GHIVEQG 223 (242)
T ss_pred HHHHHhcCCcEEeecCcccccCHHH------HHHHHHHHHHHHhc-CceEEEEEeehhHHHhhhhheEeeec-CeeEeec
Confidence 999999 9999999999999998 88999999999875 99999999999999999999999999 9999999
Q ss_pred CcccccCC
Q 005138 197 PKPQAHME 204 (712)
Q Consensus 197 ~~~e~~~~ 204 (712)
+. ..|.+
T Consensus 224 ~a-~~ft~ 230 (242)
T COG4161 224 DA-SCFTE 230 (242)
T ss_pred ch-hhccC
Confidence 84 33443
No 257
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.87 E-value=2.2e-22 Score=217.87 Aligned_cols=179 Identities=14% Similarity=0.125 Sum_probs=133.8
Q ss_pred ccEEEEeeeeeec---cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccC-----CCCCeeeccC
Q 005138 8 CSTQLIDGDGTFN---VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD-----AFKGRSQTTK 79 (712)
Q Consensus 8 ~~I~l~~l~k~y~---~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~-----p~sG~~~~t~ 79 (712)
.+|++.|+++.|. ..+|++++++|..|+ ++||+|||||||||||++|+|+. . |++|++...+
T Consensus 79 ~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge------~v~IvG~~GsGKSTLl~~L~g~~----~~~~~~p~~G~I~idG 148 (329)
T PRK14257 79 NVFEIRNFNFWYMNRTKHVLHDLNLDIKRNK------VTAFIGPSGCGKSTFLRNLNQLN----DLIEGTSHEGEIYFLG 148 (329)
T ss_pred ceEEEEeeEEEecCCCceeeeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHhccc----cccCCCCCceEEEECC
Confidence 3799999999994 247999999999999 99999999999999999999997 4 4578743211
Q ss_pred C-e--------eeccccCC-------------Cccchhc-------------------cccCCC------cccccchhhH
Q 005138 80 G-I--------WMARCAGI-------------EPCTLIM-------------------DLEGTD------GRERGEDDTA 112 (712)
Q Consensus 80 g-i--------~~~~~~~~-------------~~~~~v~-------------------d~~g~~------~~~r~~~~~~ 112 (712)
. + .+.+.+++ ++..+.. +..++. ..+.+...+.
T Consensus 149 ~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSg 228 (329)
T PRK14257 149 TNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSG 228 (329)
T ss_pred EEccccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCH
Confidence 0 0 00111110 0111000 000110 0112223345
Q ss_pred HHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecC
Q 005138 113 FEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDI 189 (712)
Q Consensus 113 ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~ 189 (712)
+|+||++||+|++ ++|||||||++||+.. .+.+.+.+.++++ ++|+|+|||+++.+...|++++++.+
T Consensus 229 GqkqRl~LARAl~~~p~IlLLDEPts~LD~~~------~~~i~~~i~~l~~--~~Tii~iTH~l~~i~~~~Driivl~~- 299 (329)
T PRK14257 229 GQQQRLCIARAIALEPEVLLMDEPTSALDPIA------TAKIEELILELKK--KYSIIIVTHSMAQAQRISDETVFFYQ- 299 (329)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHH------HHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEEC-
Confidence 5999999999999 9999999999999998 8889999998864 68999999999999988999999999
Q ss_pred CeEEEecCcccccCCc
Q 005138 190 QKIWDSVPKPQAHMET 205 (712)
Q Consensus 190 G~I~~~g~~~e~~~~~ 205 (712)
|+|+..|++.+++.+.
T Consensus 300 G~i~e~g~~~~l~~~~ 315 (329)
T PRK14257 300 GWIEEAGETKTIFIHP 315 (329)
T ss_pred CEEEEeCCHHHHhcCC
Confidence 9999999998877543
No 258
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.87 E-value=2.6e-22 Score=205.32 Aligned_cols=161 Identities=17% Similarity=0.174 Sum_probs=119.0
Q ss_pred cEEEEeeeeeec--------cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC-
Q 005138 9 STQLIDGDGTFN--------VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK- 79 (712)
Q Consensus 9 ~I~l~~l~k~y~--------~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~- 79 (712)
||++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge------~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~i~~~~~ 70 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGE------CVALSGPSGAGKSTLLKSLYANY----LPDSGRILVRHE 70 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCCeEEEecC
Confidence 488999999994 247999999999999 99999999999999999999999 89999864431
Q ss_pred Ce--ee------------ccccCC-------Cccchhcc-------------------------ccCCCc---ccccchh
Q 005138 80 GI--WM------------ARCAGI-------EPCTLIMD-------------------------LEGTDG---RERGEDD 110 (712)
Q Consensus 80 gi--~~------------~~~~~~-------~~~~~v~d-------------------------~~g~~~---~~r~~~~ 110 (712)
|. .. ....++ .+...+.+ ..|+.. .......
T Consensus 71 g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 150 (224)
T TIGR02324 71 GAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATF 150 (224)
T ss_pred CCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccC
Confidence 20 00 011111 11101100 001111 0111223
Q ss_pred hHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccce
Q 005138 111 TAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLR 186 (712)
Q Consensus 111 ~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll 186 (712)
+..|+||++||+|++ +++|+||||++||+.. ...+.+.+.++.++ |+|+|+|||+++.+...|++++.+
T Consensus 151 S~G~~qrl~laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~-g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 151 SGGEQQRVNIARGFIADYPILLLDEPTASLDAAN------RQVVVELIAEAKAR-GAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcceeEec
Confidence 445999999999999 9999999999999998 99999999998654 899999999998887778876543
No 259
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.87 E-value=5.6e-22 Score=210.31 Aligned_cols=173 Identities=14% Similarity=0.140 Sum_probs=128.0
Q ss_pred ccEEEEeeeeeeccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeee-ccc
Q 005138 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM-ARC 86 (712)
Q Consensus 8 ~~I~l~~l~k~y~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~-~~~ 86 (712)
..|++.++++. +..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+.+.+ ...
T Consensus 38 ~~l~i~nls~~-~~~vL~~vs~~i~~Ge------~~~liG~NGsGKSTLl~~I~Gl~----~p~~G~I~i~g~i~yv~q~ 106 (282)
T cd03291 38 NNLFFSNLCLV-GAPVLKNINLKIEKGE------MLAITGSTGSGKTSLLMLILGEL----EPSEGKIKHSGRISFSSQF 106 (282)
T ss_pred CeEEEEEEEEe-cccceeeeeEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEEEEEeCc
Confidence 46999999886 4458999999999999 99999999999999999999999 899998654332211 111
Q ss_pred cCCCccchhccc------------------cCCCc-------------ccccchhhHHHHHHHHHHHHHH---HHhhhcc
Q 005138 87 AGIEPCTLIMDL------------------EGTDG-------------RERGEDDTAFEKQSALFALAVS---DIVLINM 132 (712)
Q Consensus 87 ~~~~~~~~v~d~------------------~g~~~-------------~~r~~~~~~ferQrv~~A~Ala---~iLlLDE 132 (712)
....+. .+.+. .++.. .......+..|+||++||++++ ++||+||
T Consensus 107 ~~l~~~-tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDE 185 (282)
T cd03291 107 SWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDS 185 (282)
T ss_pred cccccc-CHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 111000 11110 01100 0011234567999999999999 9999999
Q ss_pred ccCCCchhhhhChhhHHHHHHHH-HHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCccccc
Q 005138 133 WCHDIGREQAANKPLLKTVFQVM-MRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (712)
Q Consensus 133 P~~~LD~~~~a~~~l~~~v~e~l-~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~ 202 (712)
||++||+.. ...+++.+ .++. . +.|||++|||++.+. .|++++++.+ |+++..|++++..
T Consensus 186 Pt~gLD~~~------~~~l~~~ll~~~~-~-~~tIiiisH~~~~~~-~~d~i~~l~~-G~i~~~g~~~~~~ 246 (282)
T cd03291 186 PFGYLDVFT------EKEIFESCVCKLM-A-NKTRILVTSKMEHLK-KADKILILHE-GSSYFYGTFSELQ 246 (282)
T ss_pred CCccCCHHH------HHHHHHHHHHHhh-C-CCEEEEEeCChHHHH-hCCEEEEEEC-CEEEEECCHHHHH
Confidence 999999998 88888765 4443 3 789999999998775 6899888888 9999998876654
No 260
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.87 E-value=4.3e-22 Score=210.44 Aligned_cols=172 Identities=15% Similarity=0.100 Sum_probs=129.0
Q ss_pred EEEEeeeeeec---cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-e----
Q 005138 10 TQLIDGDGTFN---VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-I---- 81 (712)
Q Consensus 10 I~l~~l~k~y~---~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i---- 81 (712)
|++.|+++.|. ..++++++++|..|+ +++|+|||||||||||++|+|+. + .+|++...+. +
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge------~~~IvG~nGsGKSTLl~~L~gl~----~-~~G~I~i~g~~i~~~~ 71 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQ------RVGLLGRTGSGKSTLLSAFLRLL----N-TEGDIQIDGVSWNSVP 71 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCC------EEEEECCCCCCHHHHHHHHhhhc----C-CCcEEEECCEEhhhCC
Confidence 78999999993 347999999999999 99999999999999999999998 4 6788543221 0
Q ss_pred --eeccccCC-------Cccchhccc------------------cCCCccc-------------ccchhhHHHHHHHHHH
Q 005138 82 --WMARCAGI-------EPCTLIMDL------------------EGTDGRE-------------RGEDDTAFEKQSALFA 121 (712)
Q Consensus 82 --~~~~~~~~-------~~~~~v~d~------------------~g~~~~~-------------r~~~~~~ferQrv~~A 121 (712)
.+...+++ .+. .+.+. .|+.... .+...+..|+||+++|
T Consensus 72 ~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~La 150 (275)
T cd03289 72 LQKWRKAFGVIPQKVFIFSG-TFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLA 150 (275)
T ss_pred HHHHhhhEEEECCCcccchh-hHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHH
Confidence 00011111 010 11111 1111000 0011455699999999
Q ss_pred HHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCc
Q 005138 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (712)
Q Consensus 122 ~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~ 198 (712)
+|++ ++||+||||++||+.. .+.+.+.+.+++ .++|||+|||+++.+.. |+++++|.+ |+++..|++
T Consensus 151 Rall~~p~illlDEpts~LD~~~------~~~l~~~l~~~~--~~~tii~isH~~~~i~~-~dri~vl~~-G~i~~~g~~ 220 (275)
T cd03289 151 RSVLSKAKILLLDEPSAHLDPIT------YQVIRKTLKQAF--ADCTVILSEHRIEAMLE-CQRFLVIEE-NKVRQYDSI 220 (275)
T ss_pred HHHhcCCCEEEEECccccCCHHH------HHHHHHHHHHhc--CCCEEEEEECCHHHHHh-CCEEEEecC-CeEeecCCH
Confidence 9999 9999999999999998 889999999875 37999999999987764 999999988 999999998
Q ss_pred ccccC
Q 005138 199 PQAHM 203 (712)
Q Consensus 199 ~e~~~ 203 (712)
.+++.
T Consensus 221 ~~l~~ 225 (275)
T cd03289 221 QKLLN 225 (275)
T ss_pred HHHhh
Confidence 77665
No 261
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=9.2e-23 Score=208.17 Aligned_cols=177 Identities=15% Similarity=0.126 Sum_probs=134.3
Q ss_pred ccEEEEeeeeeecc----------------------ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhcccc
Q 005138 8 CSTQLIDGDGTFNV----------------------SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 8 ~~I~l~~l~k~y~~----------------------~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
.+|.+.|++|.|.. .++.+++|+|+.|+ +++++|||||||||+||+|.|+.
T Consensus 2 ~~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~------ivgflGaNGAGKSTtLKmLTGll- 74 (325)
T COG4586 2 AMIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGE------IVGFLGANGAGKSTTLKMLTGLL- 74 (325)
T ss_pred ceeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCc------EEEEEcCCCCcchhhHHHHhCcc-
Confidence 36788888888831 15789999999999 99999999999999999999999
Q ss_pred CccCCCCCeeeccCCeeeccccCC---------Cccch---------------------------------hccccCCCc
Q 005138 66 REMDAFKGRSQTTKGIWMARCAGI---------EPCTL---------------------------------IMDLEGTDG 103 (712)
Q Consensus 66 ~~m~p~sG~~~~t~gi~~~~~~~~---------~~~~~---------------------------------v~d~~g~~~ 103 (712)
.|++|.+...+-..+.+...+ ....+ ++|+.+.-
T Consensus 75 ---~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~l- 150 (325)
T COG4586 75 ---LPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFL- 150 (325)
T ss_pred ---ccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhh-
Confidence 899998543332222111000 00000 11111110
Q ss_pred ccccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccc
Q 005138 104 RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN 180 (712)
Q Consensus 104 ~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~ 180 (712)
..+....+..||.|+-+|.||. +||+|||||-|||-.. +..+.+.+++.++++++||+++||+++.+..+|
T Consensus 151 k~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~a------q~~ir~Flke~n~~~~aTVllTTH~~~di~~lc 224 (325)
T COG4586 151 KWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNA------QANIREFLKEYNEERQATVLLTTHIFDDIATLC 224 (325)
T ss_pred hhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhH------HHHHHHHHHHHHHhhCceEEEEecchhhHHHhh
Confidence 0111123445999999999999 9999999999999988 999999999999989999999999999888899
Q ss_pred ccccceecCCeEEEecCccccc
Q 005138 181 LEPVLREDIQKIWDSVPKPQAH 202 (712)
Q Consensus 181 ~~~~ll~~~G~I~~~g~~~e~~ 202 (712)
+++++++. |+++.+|+-.+..
T Consensus 225 ~rv~~I~~-Gqlv~dg~l~~l~ 245 (325)
T COG4586 225 DRVLLIDQ-GQLVFDGTLAQLQ 245 (325)
T ss_pred hheEEeeC-CcEeecccHHHHH
Confidence 99988888 9999999876543
No 262
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.87 E-value=9.5e-22 Score=205.75 Aligned_cols=175 Identities=16% Similarity=0.094 Sum_probs=130.7
Q ss_pred cccEEEEeeeeeecc---ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC----
Q 005138 7 CCSTQLIDGDGTFNV---SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK---- 79 (712)
Q Consensus 7 ~~~I~l~~l~k~y~~---~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~---- 79 (712)
+..|++.++++.|+. .+++++++++..|+ +++|+|+||||||||+++|+|+. +|++|++...+
T Consensus 17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~i~g~~i~ 86 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQ------KVGICGRTGSGKSSLSLAFFRMV----DIFDGKIVIDGIDIS 86 (257)
T ss_pred CceEEEEEEEEEeCCCCCcceeEEEEEEcCCC------EEEEECCCCCCHHHHHHHHHccc----CCCCCeEEECCEEhh
Confidence 347999999999953 47999999999999 99999999999999999999998 89999843211
Q ss_pred ---------Cee-eccccCCCccchhcccc------------------CCC-----------c--ccccchhhHHHHHHH
Q 005138 80 ---------GIW-MARCAGIEPCTLIMDLE------------------GTD-----------G--RERGEDDTAFEKQSA 118 (712)
Q Consensus 80 ---------gi~-~~~~~~~~~~~~v~d~~------------------g~~-----------~--~~r~~~~~~ferQrv 118 (712)
.+. +.......+. .+.+.. +.. . .......+..|+||+
T Consensus 87 ~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl 165 (257)
T cd03288 87 KLPLHTLRSRLSIILQDPILFSG-SIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLF 165 (257)
T ss_pred hCCHHHHhhhEEEECCCCccccc-HHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHH
Confidence 111 1110001010 111100 100 0 001123345699999
Q ss_pred HHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEe
Q 005138 119 LFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (712)
Q Consensus 119 ~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~ 195 (712)
++|+|++ ++||+||||++||+.. ...+++.+.++. + +.|+|++||+++.+.. |++++++.+ |+++..
T Consensus 166 ~laral~~~p~llllDEPt~gLD~~~------~~~l~~~l~~~~-~-~~tiii~sh~~~~~~~-~dri~~l~~-G~i~~~ 235 (257)
T cd03288 166 CLARAFVRKSSILIMDEATASIDMAT------ENILQKVVMTAF-A-DRTVVTIAHRVSTILD-ADLVLVLSR-GILVEC 235 (257)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHH------HHHHHHHHHHhc-C-CCEEEEEecChHHHHh-CCEEEEEEC-CEEEEe
Confidence 9999999 9999999999999998 889999998874 3 8999999999998875 999999988 999998
Q ss_pred cCccccc
Q 005138 196 VPKPQAH 202 (712)
Q Consensus 196 g~~~e~~ 202 (712)
|++.+..
T Consensus 236 g~~~~~~ 242 (257)
T cd03288 236 DTPENLL 242 (257)
T ss_pred CCHHHHH
Confidence 8866543
No 263
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.87 E-value=4.6e-22 Score=233.13 Aligned_cols=172 Identities=14% Similarity=0.104 Sum_probs=129.4
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee---e
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW---M 83 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~---~ 83 (712)
++|++.|+++.|+ ..++++++|+++.|+ +++|+||||||||||||+|+|+. +|++|++...++.. +
T Consensus 2 ~~l~i~~ls~~~~~~~il~~is~~i~~Ge------~v~LvG~NGsGKSTLLriiaG~~----~p~~G~I~~~~~~~~~~l 71 (635)
T PRK11147 2 SLISIHGAWLSFSDAPLLDNAELHIEDNE------RVCLVGRNGAGKSTLMKILNGEV----LLDDGRIIYEQDLIVARL 71 (635)
T ss_pred cEEEEeeEEEEeCCceeEeCcEEEECCCC------EEEEECCCCCCHHHHHHHHcCCC----CCCCeEEEeCCCCEEEEe
Confidence 4799999999995 457999999999999 99999999999999999999998 89999865443311 1
Q ss_pred ccccCCCccchh-----------------------------------------------------------ccccCCCcc
Q 005138 84 ARCAGIEPCTLI-----------------------------------------------------------MDLEGTDGR 104 (712)
Q Consensus 84 ~~~~~~~~~~~v-----------------------------------------------------------~d~~g~~~~ 104 (712)
..........++ ++..|+...
T Consensus 72 ~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~ 151 (635)
T PRK11147 72 QQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPD 151 (635)
T ss_pred ccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCC
Confidence 100000000000 000111111
Q ss_pred cccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccc
Q 005138 105 ERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENL 181 (712)
Q Consensus 105 ~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~ 181 (712)
......+.+|+||++||++++ ++|||||||++||+.. ...+.+.+.++ +.|||+||||..++...|+
T Consensus 152 ~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~------~~~L~~~L~~~----~~tvlivsHd~~~l~~~~d 221 (635)
T PRK11147 152 AALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIET------IEWLEGFLKTF----QGSIIFISHDRSFIRNMAT 221 (635)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHH------HHHHHHHHHhC----CCEEEEEeCCHHHHHHhcC
Confidence 122334566999999999999 9999999999999998 88888888886 2599999999999988899
Q ss_pred cccceecCCeEEE-ecCccc
Q 005138 182 EPVLREDIQKIWD-SVPKPQ 200 (712)
Q Consensus 182 ~~~ll~~~G~I~~-~g~~~e 200 (712)
+++++.+ |+++. .|+..+
T Consensus 222 ~i~~L~~-G~i~~~~g~~~~ 240 (635)
T PRK11147 222 RIVDLDR-GKLVSYPGNYDQ 240 (635)
T ss_pred eEEEEEC-CEEEEecCCHHH
Confidence 9999988 99974 465443
No 264
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=4.4e-22 Score=209.10 Aligned_cols=176 Identities=13% Similarity=0.147 Sum_probs=130.8
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCC-----CCCeeeccC-C
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA-----FKGRSQTTK-G 80 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p-----~sG~~~~t~-g 80 (712)
.+|++.|+++.|+ ..++++++++++.|+ +++|+|+|||||||||++|+|+. +| ++|++...+ +
T Consensus 15 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~----~~~~~~~~sG~i~~~g~~ 84 (265)
T PRK14252 15 QKSEVNKLNFYYGGYQALKNINMMVHEKQ------VTALIGPSGCGKSTFLRCFNRMH----DLYPGNHYEGEIILHPDN 84 (265)
T ss_pred ceEEEEEEEEEECCeeeeeeeEEEEcCCc------EEEEECCCCCCHHHHHHHHhccc----CCCCCCCcccEEEEcCcc
Confidence 3699999999995 457999999999999 99999999999999999999997 54 678743221 0
Q ss_pred ee----------eccccCC-------Ccc------chhccccCCCcc-------------------------cccchhhH
Q 005138 81 IW----------MARCAGI-------EPC------TLIMDLEGTDGR-------------------------ERGEDDTA 112 (712)
Q Consensus 81 i~----------~~~~~~~-------~~~------~~v~d~~g~~~~-------------------------~r~~~~~~ 112 (712)
+. +...+++ .+. .+.....+.... ......+.
T Consensus 85 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~ 164 (265)
T PRK14252 85 VNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSG 164 (265)
T ss_pred ccccccccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCH
Confidence 10 0111111 010 001110111000 00112234
Q ss_pred HHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecC
Q 005138 113 FEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDI 189 (712)
Q Consensus 113 ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~ 189 (712)
.|+||++||+|++ +++|+||||++||+.. ...+.+.+.++.+ +.|+|+|||+++.+...|++++++.+
T Consensus 165 G~~qrv~laral~~~p~llllDEPt~gLD~~~------~~~l~~~l~~l~~--~~tiiivth~~~~~~~~~d~i~~l~~- 235 (265)
T PRK14252 165 GQQQRLCIARALATDPEILLFDEPTSALDPIA------TASIEELISDLKN--KVTILIVTHNMQQAARVSDYTAYMYM- 235 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHh--CCEEEEEecCHHHHHHhCCEEEEEEC-
Confidence 5999999999999 9999999999999998 9999999999853 68999999999999888999999988
Q ss_pred CeEEEecCccccc
Q 005138 190 QKIWDSVPKPQAH 202 (712)
Q Consensus 190 G~I~~~g~~~e~~ 202 (712)
|++...|+..+.+
T Consensus 236 G~i~~~g~~~~~~ 248 (265)
T PRK14252 236 GELIEFGATDTIF 248 (265)
T ss_pred CEEEEeCCHHHHH
Confidence 9999998876654
No 265
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.86 E-value=4.2e-22 Score=227.38 Aligned_cols=174 Identities=9% Similarity=0.070 Sum_probs=130.5
Q ss_pred ccEEEEeeeeeec----cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCC-CCCeeeccCC-e
Q 005138 8 CSTQLIDGDGTFN----VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA-FKGRSQTTKG-I 81 (712)
Q Consensus 8 ~~I~l~~l~k~y~----~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p-~sG~~~~t~g-i 81 (712)
++|++.|+++.|. ..++++++|++..|+ +++|+||||||||||||+|+|+. +| ++|++...+. +
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge------~~~l~G~NGsGKSTLl~~l~G~~----~p~~~G~i~~~g~~~ 325 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKRVDDVSFSLRRGE------ILGVAGLVGAGRTELVQALFGAY----PGKFEGNVFINGKPV 325 (500)
T ss_pred ceEEEeCCcccccccccccccccceeEEeCCc------EEEEeCCCCCCHHHHHHHHhCCC----CCCCCeEEEECCEEC
Confidence 3699999999982 247999999999999 99999999999999999999998 75 7898543210 0
Q ss_pred -------eeccccCC----------Cccchhccc------------------------------cCCCc---ccccchhh
Q 005138 82 -------WMARCAGI----------EPCTLIMDL------------------------------EGTDG---RERGEDDT 111 (712)
Q Consensus 82 -------~~~~~~~~----------~~~~~v~d~------------------------------~g~~~---~~r~~~~~ 111 (712)
.+...+++ .+...+.+. .|+.. .......+
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 405 (500)
T TIGR02633 326 DIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLS 405 (500)
T ss_pred CCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCC
Confidence 00001111 010011010 01100 01112234
Q ss_pred HHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceec
Q 005138 112 AFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (712)
Q Consensus 112 ~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~ 188 (712)
..||||++||+|++ ++|||||||++||+.. ...+++++.++.+. |.|||+||||++++...|++++++.+
T Consensus 406 gGqkqrv~la~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~l~~~-g~tviivsHd~~~~~~~~d~v~~l~~ 478 (500)
T TIGR02633 406 GGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGA------KYEIYKLINQLAQE-GVAIIVVSSELAEVLGLSDRVLVIGE 478 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhH------HHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEEC
Confidence 55999999999999 9999999999999998 99999999998765 99999999999999989999999988
Q ss_pred CCeEEEecCcc
Q 005138 189 IQKIWDSVPKP 199 (712)
Q Consensus 189 ~G~I~~~g~~~ 199 (712)
|++...++.+
T Consensus 479 -G~i~~~~~~~ 488 (500)
T TIGR02633 479 -GKLKGDFVNH 488 (500)
T ss_pred -CEEEEEEccc
Confidence 9998877553
No 266
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=6.1e-22 Score=212.40 Aligned_cols=176 Identities=14% Similarity=0.199 Sum_probs=129.2
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccC-----CCCCeeeccCC-
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD-----AFKGRSQTTKG- 80 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~-----p~sG~~~~t~g- 80 (712)
.+|.+.|+++.|. ..+|+++++++..|+ +++|+|||||||||||++|+|+. + |++|++...+.
T Consensus 44 ~~l~i~nl~~~~~~~~iL~~is~~i~~Ge------~~~IvG~nGsGKSTLl~~L~Gl~----~~~~~~p~~G~I~i~g~~ 113 (305)
T PRK14264 44 AKLSVEDLDVYYGDDHALKGVSMDIPEKS------VTALIGPSGCGKSTFLRCLNRMN----DRIKAARIDGSVELDGQD 113 (305)
T ss_pred ceEEEEEEEEEeCCeeeeeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHhccc----cccCCCCCceEEEECCEE
Confidence 3699999999995 457999999999999 99999999999999999999997 4 57887432211
Q ss_pred ee--------eccccCC-------Cc------cchhcccc------------CCCc------------------------
Q 005138 81 IW--------MARCAGI-------EP------CTLIMDLE------------GTDG------------------------ 103 (712)
Q Consensus 81 i~--------~~~~~~~-------~~------~~~v~d~~------------g~~~------------------------ 103 (712)
+. +...+++ .+ ..+..... +...
T Consensus 114 i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 193 (305)
T PRK14264 114 IYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDR 193 (305)
T ss_pred cccccccHHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHH
Confidence 00 0011111 00 00000000 0000
Q ss_pred -ccccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccc
Q 005138 104 -RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE 179 (712)
Q Consensus 104 -~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~ 179 (712)
.......+..|+||++||+|++ ++|||||||++||+.. ...+.++++++.+ +.|+|+||||++.+...
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~------~~~l~~~L~~~~~--~~tiiivtH~~~~i~~~ 265 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIA------TSKIEDLIEELAE--EYTVVVVTHNMQQAARI 265 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHhc--CCEEEEEEcCHHHHHHh
Confidence 0001123345999999999999 9999999999999998 9999999999865 48999999999999888
Q ss_pred ccccc-ceecCCeEEEecCccccc
Q 005138 180 NLEPV-LREDIQKIWDSVPKPQAH 202 (712)
Q Consensus 180 ~~~~~-ll~~~G~I~~~g~~~e~~ 202 (712)
|++++ ++.+ |+++..|++++.+
T Consensus 266 ~d~i~~~l~~-G~i~~~g~~~~~~ 288 (305)
T PRK14264 266 SDQTAVFLTG-GELVEYDDTDKIF 288 (305)
T ss_pred cCEEEEEecC-CEEEEeCCHHHHH
Confidence 99875 4566 9999998876654
No 267
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=4.2e-22 Score=228.96 Aligned_cols=172 Identities=15% Similarity=0.157 Sum_probs=130.2
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC--Ce-eec
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--GI-WMA 84 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~--gi-~~~ 84 (712)
+|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+ .+ ++.
T Consensus 319 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge------~~~l~G~NGsGKSTLl~~i~G~~----~p~~G~i~~~~~~~i~~~~ 388 (530)
T PRK15064 319 ALEVENLTKGFDNGPLFKNLNLLLEAGE------RLAIIGENGVGKTTLLRTLVGEL----EPDSGTVKWSENANIGYYA 388 (530)
T ss_pred eEEEEeeEEeeCCceeecCcEEEECCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCceEEEEEc
Confidence 799999999995 357999999999999 99999999999999999999998 89999864332 11 111
Q ss_pred ccc--CCCccchhccc--------------------cCCCc---ccccchhhHHHHHHHHHHHHHH---HHhhhccccCC
Q 005138 85 RCA--GIEPCTLIMDL--------------------EGTDG---RERGEDDTAFEKQSALFALAVS---DIVLINMWCHD 136 (712)
Q Consensus 85 ~~~--~~~~~~~v~d~--------------------~g~~~---~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~ 136 (712)
... .+.+...+.+. .|+.. .......+..|+||++||++++ ++|||||||++
T Consensus 389 q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~ 468 (530)
T PRK15064 389 QDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNH 468 (530)
T ss_pred ccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 111 01111111111 11110 1112233455999999999999 99999999999
Q ss_pred CchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEE-EecCcccc
Q 005138 137 IGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW-DSVPKPQA 201 (712)
Q Consensus 137 LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~-~~g~~~e~ 201 (712)
||+.. ...+.+.+.++ +.|||+||||.+.+...|++++++.+ |+++ ..|++.+.
T Consensus 469 LD~~~------~~~l~~~l~~~----~~tvi~vsHd~~~~~~~~d~i~~l~~-g~i~~~~g~~~~~ 523 (530)
T PRK15064 469 MDMES------IESLNMALEKY----EGTLIFVSHDREFVSSLATRIIEITP-DGVVDFSGTYEEY 523 (530)
T ss_pred CCHHH------HHHHHHHHHHC----CCEEEEEeCCHHHHHHhCCEEEEEEC-CeEEEcCCCHHHH
Confidence 99998 89999988876 34999999999999888999999988 9987 66765544
No 268
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=7.5e-22 Score=207.11 Aligned_cols=179 Identities=17% Similarity=0.200 Sum_probs=132.0
Q ss_pred cccEEEEeeeeeecc-ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCC-----CCCeeeccCC
Q 005138 7 CCSTQLIDGDGTFNV-SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA-----FKGRSQTTKG 80 (712)
Q Consensus 7 ~~~I~l~~l~k~y~~-~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p-----~sG~~~~t~g 80 (712)
...+.+..+++.|+. .+++++++++..|+ +++|+|+||||||||+++|+|+. +| ++|++...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~----~p~~~~~~~G~i~~~g~ 75 (261)
T PRK14263 6 PIVMDCKLDKIFYGNFMAVRDSHVPIRKNE------ITGFIGPSGCGKSTVLRSLNRMN----DLVKGFRFEGHVHFLGQ 75 (261)
T ss_pred CceEEEEeEEEEeCCEEEEeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHHccc----ccccCCCCceEEEECCE
Confidence 346899999999953 57999999999999 99999999999999999999998 55 6787432211
Q ss_pred -e--------eeccccCC---Cc---cchhcc------------------------ccCCCcc------cccchhhHHHH
Q 005138 81 -I--------WMARCAGI---EP---CTLIMD------------------------LEGTDGR------ERGEDDTAFEK 115 (712)
Q Consensus 81 -i--------~~~~~~~~---~~---~~~v~d------------------------~~g~~~~------~r~~~~~~fer 115 (712)
+ .+...+++ .+ ...+.+ ..|+... .........|+
T Consensus 76 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~ 155 (261)
T PRK14263 76 DVYGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQ 155 (261)
T ss_pred eccccccchHhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHH
Confidence 0 00011111 00 011111 1111100 00112345599
Q ss_pred HHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccccccccee-----
Q 005138 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRE----- 187 (712)
Q Consensus 116 Qrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~----- 187 (712)
||+++|+|++ ++||+||||++||+.. ...+++++.++. + +.|+|++||+++.+...|++++++.
T Consensus 156 qrv~laral~~~p~llllDEPtsgLD~~~------~~~l~~~l~~~~-~-~~tii~isH~~~~i~~~~d~v~~l~~~~~~ 227 (261)
T PRK14263 156 QRLCIARAIATEPEVLLLDEPCSALDPIA------TRRVEELMVELK-K-DYTIALVTHNMQQAIRVADTTAFFSVDISQ 227 (261)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHh-c-CCeEEEEeCCHHHHHHhCCEEEEEeccccc
Confidence 9999999999 9999999999999998 999999999984 3 7899999999999988999999996
Q ss_pred --cCCeEEEecCcccccC
Q 005138 188 --DIQKIWDSVPKPQAHM 203 (712)
Q Consensus 188 --~~G~I~~~g~~~e~~~ 203 (712)
+.|+++..|++++++.
T Consensus 228 ~~~~G~i~~~g~~~~~~~ 245 (261)
T PRK14263 228 GTRTGYLVEMGPTAQIFQ 245 (261)
T ss_pred ccCCceEEEeCCHHHHHh
Confidence 3499999998776554
No 269
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.86 E-value=8.2e-22 Score=198.50 Aligned_cols=157 Identities=11% Similarity=0.063 Sum_probs=114.7
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee----
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW---- 82 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~---- 82 (712)
||+++|+++.|+ ..++++++++++.|+ +++|+||||||||||+++|+|+. +|++|++...+. +.
T Consensus 1 ml~~~~l~~~~~~~~il~~~s~~i~~Ge------~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~ 70 (200)
T PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAGG------LLHLKGSNGAGKTTLLKLIAGLL----NPEKGEILFERQSIKKDLC 70 (200)
T ss_pred CEEEEEEEEEeCCeeEEeeeeEEECCCC------EEEEECCCCCCHHHHHHHHhcCC----CCCCeeEEECCCccccCHH
Confidence 489999999995 457999999999999 99999999999999999999999 899998533221 00
Q ss_pred -eccccC-------CCccchhcccc--------------------CCCc--ccccchhhHHHHHHHHHHHHHH---HHhh
Q 005138 83 -MARCAG-------IEPCTLIMDLE--------------------GTDG--RERGEDDTAFEKQSALFALAVS---DIVL 129 (712)
Q Consensus 83 -~~~~~~-------~~~~~~v~d~~--------------------g~~~--~~r~~~~~~ferQrv~~A~Ala---~iLl 129 (712)
+...++ ..+...+.+.. ++.. .......+..|+||+++|+|++ ++||
T Consensus 71 ~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~li 150 (200)
T PRK13540 71 TYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWL 150 (200)
T ss_pred HHHhheEEeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 001111 11111111111 1100 0001123445999999999999 9999
Q ss_pred hccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccc
Q 005138 130 INMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEP 183 (712)
Q Consensus 130 LDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~ 183 (712)
+||||++||+.. ...+.+.+.++.+. |.|+|+|||+...+.. ||..
T Consensus 151 lDEP~~~LD~~~------~~~l~~~l~~~~~~-~~tiii~sh~~~~~~~-~d~~ 196 (200)
T PRK13540 151 LDEPLVALDELS------LLTIITKIQEHRAK-GGAVLLTSHQDLPLNK-ADYE 196 (200)
T ss_pred EeCCCcccCHHH------HHHHHHHHHHHHHc-CCEEEEEeCCchhccc-cchh
Confidence 999999999998 99999999998654 8999999999987654 5543
No 270
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.86 E-value=1.1e-21 Score=201.03 Aligned_cols=166 Identities=16% Similarity=0.178 Sum_probs=122.8
Q ss_pred cccEEEEeeeeeecc----ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee
Q 005138 7 CCSTQLIDGDGTFNV----SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW 82 (712)
Q Consensus 7 ~~~I~l~~l~k~y~~----~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~ 82 (712)
..+|++.++++.|+. .+++++++++..|+ +++|+||||||||||+++|+|+. +|++|++...+...
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~----~~~~G~i~~~g~~~ 78 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGE------VTALVGPSGSGKSTVVALLENFY----QPQGGQVLLDGKPI 78 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCC------EEEEECCCCCCHHHHHHHHhcCc----CCCCcEEEECCCch
Confidence 457999999999952 47999999999999 99999999999999999999999 89999853222100
Q ss_pred -------eccccCC---Ccc---chhcccc------------------------------CCCc--ccccchhhHHHHHH
Q 005138 83 -------MARCAGI---EPC---TLIMDLE------------------------------GTDG--RERGEDDTAFEKQS 117 (712)
Q Consensus 83 -------~~~~~~~---~~~---~~v~d~~------------------------------g~~~--~~r~~~~~~ferQr 117 (712)
....+++ .+. ..+.+.. |+.. .......+..|+||
T Consensus 79 ~~~~~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qr 158 (226)
T cd03248 79 SQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQR 158 (226)
T ss_pred HHcCHHHHHhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHH
Confidence 0000110 000 0111100 1110 01112234559999
Q ss_pred HHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeE
Q 005138 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (712)
Q Consensus 118 v~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I 192 (712)
+++|+|++ +++|+||||++||+.. ...+.+.+.++.+ +.|+|+||||++.+.. |++++++.+ |++
T Consensus 159 v~laral~~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~--~~tii~~sh~~~~~~~-~d~i~~l~~-g~i 226 (226)
T cd03248 159 VAIARALIRNPQVLILDEATSALDAES------EQQVQQALYDWPE--RRTVLVIAHRLSTVER-ADQILVLDG-GRI 226 (226)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHcC--CCEEEEEECCHHHHHh-CCEEEEecC-CcC
Confidence 99999999 9999999999999998 9999999999854 5899999999988864 898888877 764
No 271
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.86 E-value=4.3e-22 Score=200.83 Aligned_cols=156 Identities=15% Similarity=0.131 Sum_probs=112.4
Q ss_pred EEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee--e-----
Q 005138 12 LIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW--M----- 83 (712)
Q Consensus 12 l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~--~----- 83 (712)
+.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+... +
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~Ge------~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~~~ 70 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKGK------MYAIIGESGSGKSTLLNIIGLLE----KFDSGQVYLNGKETPPLNSKKA 70 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCCc------EEEEECCCCCCHHHHHHHHhcCC----CCCCeEEEECCEEccccchhhH
Confidence 367888885 457999999999999 99999999999999999999999 89999853322110 0
Q ss_pred ----ccccCC-------Cccchhccc-------cCCCcc--------------------cccchhhHHHHHHHHHHHHHH
Q 005138 84 ----ARCAGI-------EPCTLIMDL-------EGTDGR--------------------ERGEDDTAFEKQSALFALAVS 125 (712)
Q Consensus 84 ----~~~~~~-------~~~~~v~d~-------~g~~~~--------------------~r~~~~~~ferQrv~~A~Ala 125 (712)
...+++ .+...+.+. .+.... ......+..|+||+++|+|++
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~ 150 (206)
T TIGR03608 71 SKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAIL 150 (206)
T ss_pred HHHHHhCeeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 001111 111111110 011100 011122344999999999999
Q ss_pred ---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccc
Q 005138 126 ---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVL 185 (712)
Q Consensus 126 ---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~l 185 (712)
++||+||||++||+.. ...+.+.+.++.++ |.|+|++||+++.+ ..|+++++
T Consensus 151 ~~p~llllDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tii~~sh~~~~~-~~~d~i~~ 205 (206)
T TIGR03608 151 KDPPLILADEPTGSLDPKN------RDEVLDLLLELNDE-GKTIIIVTHDPEVA-KQADRVIE 205 (206)
T ss_pred cCCCEEEEeCCcCCCCHHH------HHHHHHHHHHHHhc-CCEEEEEeCCHHHH-hhcCEEEe
Confidence 9999999999999998 99999999998764 89999999999865 46777654
No 272
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.86 E-value=5.1e-22 Score=227.22 Aligned_cols=172 Identities=13% Similarity=0.209 Sum_probs=130.7
Q ss_pred cEEEEeeeeeeccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC---------
Q 005138 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--------- 79 (712)
Q Consensus 9 ~I~l~~l~k~y~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~--------- 79 (712)
+|++.|+++. +++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+
T Consensus 268 ~l~~~~l~~~----~l~~isl~i~~Ge------~~~l~G~NGsGKSTLl~~i~Gl~----~p~~G~i~~~g~~i~~~~~~ 333 (510)
T PRK15439 268 VLTVEDLTGE----GFRNISLEVRAGE------ILGLAGVVGAGRTELAETLYGLR----PARGGRIMLNGKEINALSTA 333 (510)
T ss_pred eEEEeCCCCC----CccceeEEEcCCc------EEEEECCCCCCHHHHHHHHcCCC----CCCCcEEEECCEECCCCCHH
Confidence 6999999852 5899999999999 99999999999999999999998 89999854321
Q ss_pred -----Cee-ecccc---CCCccchhccc----------------------------cCCC-c--ccccchhhHHHHHHHH
Q 005138 80 -----GIW-MARCA---GIEPCTLIMDL----------------------------EGTD-G--RERGEDDTAFEKQSAL 119 (712)
Q Consensus 80 -----gi~-~~~~~---~~~~~~~v~d~----------------------------~g~~-~--~~r~~~~~~ferQrv~ 119 (712)
++. +.... ...+...+.+. .|+. . .......+.+||||++
T Consensus 334 ~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~ 413 (510)
T PRK15439 334 QRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVL 413 (510)
T ss_pred HHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHH
Confidence 111 11100 00000111110 0111 0 0111223445999999
Q ss_pred HHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEec
Q 005138 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 120 ~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g 196 (712)
||+|++ ++|||||||++||+.. +..+.+++.++.++ |.|||+||||++++...|++++++.+ |+++..+
T Consensus 414 la~al~~~p~lLlLDEPt~gLD~~~------~~~l~~~l~~l~~~-g~tiIivsHd~~~i~~~~d~i~~l~~-G~i~~~~ 485 (510)
T PRK15439 414 IAKCLEASPQLLIVDEPTRGVDVSA------RNDIYQLIRSIAAQ-NVAVLFISSDLEEIEQMADRVLVMHQ-GEISGAL 485 (510)
T ss_pred HHHHHhhCCCEEEECCCCcCcChhH------HHHHHHHHHHHHhC-CCEEEEECCCHHHHHHhCCEEEEEEC-CEEEEEE
Confidence 999999 9999999999999999 99999999999775 89999999999999999999999988 9999998
Q ss_pred Cccccc
Q 005138 197 PKPQAH 202 (712)
Q Consensus 197 ~~~e~~ 202 (712)
+++++.
T Consensus 486 ~~~~~~ 491 (510)
T PRK15439 486 TGAAIN 491 (510)
T ss_pred ccccCC
Confidence 876654
No 273
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.86 E-value=4.6e-22 Score=251.27 Aligned_cols=176 Identities=10% Similarity=0.125 Sum_probs=137.2
Q ss_pred ccEEEEeeeeeecc---ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee-
Q 005138 8 CSTQLIDGDGTFNV---SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW- 82 (712)
Q Consensus 8 ~~I~l~~l~k~y~~---~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~- 82 (712)
.+|+++|++|.|+. .+++++++.|+.|+ ++||+||||||||||+|+|+|+. .|++|++...+- +.
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GE------i~gLLG~NGAGKTTLlkmL~Gll----~ptsG~I~i~G~~i~~ 2005 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGE------CFGLLGVNGAGKTTTFKMLTGDT----TVTSGDATVAGKSILT 2005 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCc------EEEEECCCCCcHHHHHHHHhCCC----CCCccEEEECCEECcc
Confidence 46999999999963 48999999999999 99999999999999999999999 899998543221 10
Q ss_pred ----eccccCC-------Cccchhcc-------ccCCCcc--------------------cccchhhHHHHHHHHHHHHH
Q 005138 83 ----MARCAGI-------EPCTLIMD-------LEGTDGR--------------------ERGEDDTAFEKQSALFALAV 124 (712)
Q Consensus 83 ----~~~~~~~-------~~~~~v~d-------~~g~~~~--------------------~r~~~~~~ferQrv~~A~Al 124 (712)
....+|+ .+.+.+.+ ..|.+.. ......+.+||||+.+|+|+
T Consensus 2006 ~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~AL 2085 (2272)
T TIGR01257 2006 NISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIAL 2085 (2272)
T ss_pred hHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHH
Confidence 0111221 11111111 1122111 11122344599999999999
Q ss_pred H---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccc
Q 005138 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (712)
Q Consensus 125 a---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~ 201 (712)
+ ++|||||||+||||.. ++.+++++.++.++ |+|||++||+++++..+|+++++|.+ |+++..|++.++
T Consensus 2086 i~~P~VLLLDEPTsGLDp~s------r~~l~~lL~~l~~~-g~TIILtTH~mee~e~lcDrV~IL~~-G~i~~~Gs~q~L 2157 (2272)
T TIGR01257 2086 IGCPPLVLLDEPTTGMDPQA------RRMLWNTIVSIIRE-GRAVVLTSHSMEECEALCTRLAIMVK-GAFQCLGTIQHL 2157 (2272)
T ss_pred hcCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEECCHHHH
Confidence 9 9999999999999999 99999999998765 99999999999999999999999998 999999997664
No 274
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.86 E-value=3.9e-22 Score=233.20 Aligned_cols=176 Identities=20% Similarity=0.243 Sum_probs=136.6
Q ss_pred cEEEEeeeeeecc---ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-----
Q 005138 9 STQLIDGDGTFNV---SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG----- 80 (712)
Q Consensus 9 ~I~l~~l~k~y~~---~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g----- 80 (712)
.|+++|++++|+. .+|++++++|.+|+ .|||+|+||||||||+|+|.|+. +|.+|++...+-
T Consensus 471 ~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge------~vaIvG~SGsGKSTL~KLL~gly----~p~~G~I~~dg~dl~~i 540 (709)
T COG2274 471 EIEFENVSFRYGPDDPPVLEDLSLEIPPGE------KVAIVGRSGSGKSTLLKLLLGLY----KPQQGRILLDGVDLNDI 540 (709)
T ss_pred eEEEEEEEEEeCCCCcchhhceeEEeCCCC------EEEEECCCCCCHHHHHHHHhcCC----CCCCceEEECCEeHHhc
Confidence 4999999999953 37999999999999 99999999999999999999999 899999543220
Q ss_pred --eeeccccCC-------------Cccc----------------------hhccc-cC--CCcccccchhhHHHHHHHHH
Q 005138 81 --IWMARCAGI-------------EPCT----------------------LIMDL-EG--TDGRERGEDDTAFEKQSALF 120 (712)
Q Consensus 81 --i~~~~~~~~-------------~~~~----------------------~v~d~-~g--~~~~~r~~~~~~ferQrv~~ 120 (712)
..+++.+++ +|.. ++... .| +.-.+.+...+++||||+++
T Consensus 541 ~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlal 620 (709)
T COG2274 541 DLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLAL 620 (709)
T ss_pred CHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHH
Confidence 011111111 0000 00000 01 11224444556779999999
Q ss_pred HHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecC
Q 005138 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (712)
Q Consensus 121 A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~ 197 (712)
|||+. +||||||||++||+.+ .+.|.+.+.++.. |+|+|+|+|++..+.. ||+++++++ |+|+.+|+
T Consensus 621 ARaLl~~P~ILlLDEaTSaLD~~s------E~~I~~~L~~~~~--~~T~I~IaHRl~ti~~-adrIiVl~~-Gkiv~~gs 690 (709)
T COG2274 621 ARALLSKPKILLLDEATSALDPET------EAIILQNLLQILQ--GRTVIIIAHRLSTIRS-ADRIIVLDQ-GKIVEQGS 690 (709)
T ss_pred HHHhccCCCEEEEeCcccccCHhH------HHHHHHHHHHHhc--CCeEEEEEccchHhhh-ccEEEEccC-CceeccCC
Confidence 99999 9999999999999999 9999999999863 7999999999988764 899999988 99999999
Q ss_pred cccccCC
Q 005138 198 KPQAHME 204 (712)
Q Consensus 198 ~~e~~~~ 204 (712)
.++.+..
T Consensus 691 ~~ell~~ 697 (709)
T COG2274 691 HEELLAQ 697 (709)
T ss_pred HHHHHHh
Confidence 9887643
No 275
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.86 E-value=8.6e-22 Score=230.72 Aligned_cols=170 Identities=16% Similarity=0.171 Sum_probs=129.1
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCe---ee
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGI---WM 83 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi---~~ 83 (712)
.+|++.|+++.|+ ..++++++++|..|+ +++|+|||||||||||++|+|+. +|++|++....++ ++
T Consensus 311 ~~l~~~~l~~~y~~~~il~~isl~i~~Ge------~~~l~G~NGsGKSTLlk~l~G~~----~p~~G~i~~~~~~~igy~ 380 (638)
T PRK10636 311 PLLKMEKVSAGYGDRIILDSIKLNLVPGS------RIGLLGRNGAGKSTLIKLLAGEL----APVSGEIGLAKGIKLGYF 380 (638)
T ss_pred ceEEEEeeEEEeCCeeeeccceEEECCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCCeEEECCCEEEEEe
Confidence 3699999999995 357999999999999 99999999999999999999999 8999986543221 11
Q ss_pred cccc--CCCccchhcc-------------------ccCCCc---ccccchhhHHHHHHHHHHHHHH---HHhhhccccCC
Q 005138 84 ARCA--GIEPCTLIMD-------------------LEGTDG---RERGEDDTAFEKQSALFALAVS---DIVLINMWCHD 136 (712)
Q Consensus 84 ~~~~--~~~~~~~v~d-------------------~~g~~~---~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~ 136 (712)
.... .......+++ ..|+.+ .......+.+||||++||++++ ++|||||||++
T Consensus 381 ~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~ 460 (638)
T PRK10636 381 AQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNH 460 (638)
T ss_pred cCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 1110 0111111111 112211 1112334556999999999999 99999999999
Q ss_pred CchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEE-EecCc
Q 005138 137 IGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW-DSVPK 198 (712)
Q Consensus 137 LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~-~~g~~ 198 (712)
||+.. ...+.+.+.++ . | |||+||||++++...|++++++.+ |++. ..|+.
T Consensus 461 LD~~~------~~~l~~~L~~~--~-g-tvi~vSHd~~~~~~~~d~i~~l~~-G~i~~~~g~~ 512 (638)
T PRK10636 461 LDLDM------RQALTEALIDF--E-G-ALVVVSHDRHLLRSTTDDLYLVHD-GKVEPFDGDL 512 (638)
T ss_pred CCHHH------HHHHHHHHHHc--C-C-eEEEEeCCHHHHHHhCCEEEEEEC-CEEEEcCCCH
Confidence 99998 99999999886 2 4 999999999999889999999988 9986 55553
No 276
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.86 E-value=9.8e-22 Score=226.94 Aligned_cols=173 Identities=12% Similarity=0.088 Sum_probs=129.9
Q ss_pred ccEEEEeeeeeec-c-ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC--e-e
Q 005138 8 CSTQLIDGDGTFN-V-SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG--I-W 82 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~-~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g--i-~ 82 (712)
.+|++.|+++.|+ . .++++++++++.|+ +++|+|||||||||||++|+|+. +|++|.+..... + +
T Consensus 3 ~~i~~~nls~~~~~~~~il~~is~~i~~Ge------~~~liG~NGsGKSTLl~~i~G~~----~p~~G~i~~~~~~~i~~ 72 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKKEILKDISLSFFPGA------KIGVLGLNGAGKSTLLRIMAGVD----KEFNGEARPAPGIKVGY 72 (552)
T ss_pred EEEEEeeEEEecCCCCeeecCceEEECCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCceEEecCCCEEEE
Confidence 3699999999996 3 47999999999999 99999999999999999999998 899998644321 1 1
Q ss_pred eccccCCCccchhccc-------------------------------------------------------------cCC
Q 005138 83 MARCAGIEPCTLIMDL-------------------------------------------------------------EGT 101 (712)
Q Consensus 83 ~~~~~~~~~~~~v~d~-------------------------------------------------------------~g~ 101 (712)
+.......+...+.+. .|+
T Consensus 73 v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 152 (552)
T TIGR03719 73 LPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRC 152 (552)
T ss_pred EeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCC
Confidence 1111111111111110 011
Q ss_pred Cc-ccccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcc
Q 005138 102 DG-RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (712)
Q Consensus 102 ~~-~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~ 177 (712)
.. .......+.+||||++||++++ ++|||||||++||+.. ...+.+.+.++ +.|||+||||++.+.
T Consensus 153 ~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~------~~~l~~~L~~~----~~tvIiisHd~~~~~ 222 (552)
T TIGR03719 153 PPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAES------VAWLEQHLQEY----PGTVVAVTHDRYFLD 222 (552)
T ss_pred CcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHH------HHHHHHHHHhC----CCeEEEEeCCHHHHH
Confidence 00 1112234566999999999999 9999999999999998 88898888875 349999999999998
Q ss_pred cccccccceecCCeEE-EecCcccc
Q 005138 178 LENLEPVLREDIQKIW-DSVPKPQA 201 (712)
Q Consensus 178 ~~~~~~~ll~~~G~I~-~~g~~~e~ 201 (712)
..|++++++.+ |+++ ..|+..+.
T Consensus 223 ~~~d~v~~l~~-g~i~~~~g~~~~~ 246 (552)
T TIGR03719 223 NVAGWILELDR-GRGIPWEGNYSSW 246 (552)
T ss_pred hhcCeEEEEEC-CEEEEecCCHHHH
Confidence 88999999988 9975 56766544
No 277
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.3e-21 Score=215.42 Aligned_cols=175 Identities=18% Similarity=0.179 Sum_probs=135.2
Q ss_pred cEEEEeeeeeec---cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-e-ee
Q 005138 9 STQLIDGDGTFN---VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-I-WM 83 (712)
Q Consensus 9 ~I~l~~l~k~y~---~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i-~~ 83 (712)
.++++|+++.|. ..+|++++++++.|+ .|+|+|++|||||||++.|.|.. +|++|++...++ + .+
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GE------kvAIlG~SGsGKSTllqLl~~~~----~~~~G~i~~~g~~~~~l 405 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGE------KVAILGRSGSGKSTLLQLLAGAW----DPQQGSITLNGVEIASL 405 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCC------eEEEECCCCCCHHHHHHHHHhcc----CCCCCeeeECCcChhhC
Confidence 589999999994 247999999999999 99999999999999999999998 899999654432 1 01
Q ss_pred c------------cccCC------Cccch------------hcccc-----------CC--CcccccchhhHHHHHHHHH
Q 005138 84 A------------RCAGI------EPCTL------------IMDLE-----------GT--DGRERGEDDTAFEKQSALF 120 (712)
Q Consensus 84 ~------------~~~~~------~~~~~------------v~d~~-----------g~--~~~~r~~~~~~ferQrv~~ 120 (712)
. ++... +|..+ +++-. |+ .-.+.++..++.|+||+++
T Consensus 406 ~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAl 485 (573)
T COG4987 406 DEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLAL 485 (573)
T ss_pred ChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHH
Confidence 0 11000 00000 00001 11 1123334456669999999
Q ss_pred HHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecC
Q 005138 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (712)
Q Consensus 121 A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~ 197 (712)
||++. +++||||||.|||+.. -+++++.+....+ |+|+|||||++..+.. ||+++++++ |+++.+|.
T Consensus 486 AR~LL~dapl~lLDEPTegLD~~T------E~~vL~ll~~~~~--~kTll~vTHrL~~le~-~drIivl~~-Gkiie~G~ 555 (573)
T COG4987 486 ARALLHDAPLWLLDEPTEGLDPIT------ERQVLALLFEHAE--GKTLLMVTHRLRGLER-MDRIIVLDN-GKIIEEGT 555 (573)
T ss_pred HHHHHcCCCeEEecCCcccCChhh------HHHHHHHHHHHhc--CCeEEEEecccccHhh-cCEEEEEEC-CeeeecCC
Confidence 99998 9999999999999999 8899999888764 8999999999987764 899999988 99999999
Q ss_pred cccccC
Q 005138 198 KPQAHM 203 (712)
Q Consensus 198 ~~e~~~ 203 (712)
+.+.+.
T Consensus 556 ~~~Ll~ 561 (573)
T COG4987 556 HAELLA 561 (573)
T ss_pred HHhhhc
Confidence 988775
No 278
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.86 E-value=1.6e-21 Score=195.98 Aligned_cols=151 Identities=12% Similarity=0.116 Sum_probs=109.5
Q ss_pred EEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC--------
Q 005138 10 TQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-------- 80 (712)
Q Consensus 10 I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-------- 80 (712)
|++.++++.|+ ..+++++++++..|+ +++|+||||||||||+++|+|+. +|++|++...+.
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge------~~~i~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~ 70 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGE------ALQVTGPNGIGKTTLLRILAGLL----RPDSGEVRWNGTALAEQRDE 70 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcCCc------EEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEEcccchHH
Confidence 46889999995 457999999999999 99999999999999999999999 899998532221
Q ss_pred ----e-eeccccCCCccchhcccc---------------------CCCcc--cccchhhHHHHHHHHHHHHHH---HHhh
Q 005138 81 ----I-WMARCAGIEPCTLIMDLE---------------------GTDGR--ERGEDDTAFEKQSALFALAVS---DIVL 129 (712)
Q Consensus 81 ----i-~~~~~~~~~~~~~v~d~~---------------------g~~~~--~r~~~~~~ferQrv~~A~Ala---~iLl 129 (712)
+ ++.......+...+.+.. |+... ......+..|+||+++|+|++ +++|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 150 (198)
T TIGR01189 71 PHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWI 150 (198)
T ss_pred hhhheEEeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 0 111111111111111111 11000 011122344999999999999 9999
Q ss_pred hccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcc
Q 005138 130 INMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (712)
Q Consensus 130 LDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~ 177 (712)
+||||++||+.. ...+.+.+.++.++ |.|+|++||+.....
T Consensus 151 lDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tii~~sH~~~~~~ 191 (198)
T TIGR01189 151 LDEPTTALDKAG------VALLAGLLRAHLAR-GGIVLLTTHQDLGLV 191 (198)
T ss_pred EeCCCcCCCHHH------HHHHHHHHHHHHhC-CCEEEEEEccccccc
Confidence 999999999998 99999999998654 899999999986544
No 279
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.2e-21 Score=218.77 Aligned_cols=176 Identities=16% Similarity=0.225 Sum_probs=135.6
Q ss_pred EEEEeeeeeecc--ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-------
Q 005138 10 TQLIDGDGTFNV--SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------- 80 (712)
Q Consensus 10 I~l~~l~k~y~~--~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g------- 80 (712)
++..++++.|.. .++.+++++++.|+ .++|+|+||||||||++.|.|+. +|++|++...+-
T Consensus 321 i~~~~l~~~y~~g~~~l~~l~~t~~~g~------~talvG~SGaGKSTLl~lL~G~~----~~~~G~I~vng~~l~~l~~ 390 (559)
T COG4988 321 ISLENLSFRYPDGKPALSDLNLTIKAGQ------LTALVGASGAGKSTLLNLLLGFL----APTQGEIRVNGIDLRDLSP 390 (559)
T ss_pred eeecceEEecCCCCcccCCceeEecCCc------EEEEECCCCCCHHHHHHHHhCcC----CCCCceEEECCccccccCH
Confidence 444599999943 68999999999999 99999999999999999999999 889998533210
Q ss_pred -------eeeccccCC------Cccch----------------------hccccCCCc--ccccchhhHHHHHHHHHHHH
Q 005138 81 -------IWMARCAGI------EPCTL----------------------IMDLEGTDG--RERGEDDTAFEKQSALFALA 123 (712)
Q Consensus 81 -------i~~~~~~~~------~~~~~----------------------v~d~~g~~~--~~r~~~~~~ferQrv~~A~A 123 (712)
.|+.+.... +|..+ +-...|++. .+++...+..|+||+++|||
T Consensus 391 ~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARA 470 (559)
T COG4988 391 EAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARA 470 (559)
T ss_pred HHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHH
Confidence 122222111 11110 111223331 23444456779999999999
Q ss_pred HH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCccc
Q 005138 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (712)
Q Consensus 124 la---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e 200 (712)
+. +++|+||||++||.++ -..|.+.+.++++ ++|+|+|||++..+.. +|+++++++ |++++.|.+++
T Consensus 471 ll~~~~l~llDEpTA~LD~et------E~~i~~~l~~l~~--~ktvl~itHrl~~~~~-~D~I~vld~-G~l~~~g~~~~ 540 (559)
T COG4988 471 LLSPASLLLLDEPTAHLDAET------EQIILQALQELAK--QKTVLVITHRLEDAAD-ADRIVVLDN-GRLVEQGTHEE 540 (559)
T ss_pred hcCCCCEEEecCCccCCCHhH------HHHHHHHHHHHHh--CCeEEEEEcChHHHhc-CCEEEEecC-CceeccCCHHH
Confidence 99 8999999999999999 8999999999975 5899999999987764 889999988 99999999888
Q ss_pred ccCCc
Q 005138 201 AHMET 205 (712)
Q Consensus 201 ~~~~~ 205 (712)
..++.
T Consensus 541 L~~~~ 545 (559)
T COG4988 541 LSEKQ 545 (559)
T ss_pred HhhcC
Confidence 76543
No 280
>PRK13409 putative ATPase RIL; Provisional
Probab=99.85 E-value=9.4e-22 Score=227.85 Aligned_cols=172 Identities=19% Similarity=0.110 Sum_probs=129.9
Q ss_pred ccEEEEeeeeeeccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee-eccc
Q 005138 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW-MARC 86 (712)
Q Consensus 8 ~~I~l~~l~k~y~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~-~~~~ 86 (712)
.++++.|+++.|+...++++++++..|+ +++|+|||||||||||++|+|+. +|++|++.....+. +.+.
T Consensus 339 ~~l~~~~ls~~~~~~~l~~~s~~i~~Ge------iv~l~G~NGsGKSTLlk~L~Gl~----~p~~G~I~~~~~i~y~~Q~ 408 (590)
T PRK13409 339 TLVEYPDLTKKLGDFSLEVEGGEIYEGE------VIGIVGPNGIGKTTFAKLLAGVL----KPDEGEVDPELKISYKPQY 408 (590)
T ss_pred eEEEEcceEEEECCEEEEecceEECCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCceEEEEeeeEEEeccc
Confidence 4699999999996545899999999999 99999999999999999999999 89999864322211 1111
Q ss_pred cCCCccchhccc--------------------cCCCc--ccccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhh
Q 005138 87 AGIEPCTLIMDL--------------------EGTDG--RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQ 141 (712)
Q Consensus 87 ~~~~~~~~v~d~--------------------~g~~~--~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~ 141 (712)
........+.+. .|+.. .......+..|+||++||+|++ ++|||||||++||+.+
T Consensus 409 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~ 488 (590)
T PRK13409 409 IKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQ 488 (590)
T ss_pred ccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 111111111111 11110 0111233455999999999999 9999999999999999
Q ss_pred hhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecC
Q 005138 142 AANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (712)
Q Consensus 142 ~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~ 197 (712)
+..+.++++++.++.|.|+|+||||++++...|++++++. |++...|.
T Consensus 489 ------~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~--~~~~~~g~ 536 (590)
T PRK13409 489 ------RLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFE--GEPGKHGH 536 (590)
T ss_pred ------HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc--Ccceeeee
Confidence 9999999999977668999999999999988899988774 47766665
No 281
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.8e-21 Score=227.96 Aligned_cols=170 Identities=14% Similarity=0.101 Sum_probs=127.1
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCe---eec
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGI---WMA 84 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi---~~~ 84 (712)
||++.|+++.|+ ..++++++|+|..|+ ++||+||||||||||||+|+|+. +|++|++...++. ++.
T Consensus 1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge------~v~LvG~NGsGKSTLLkiL~G~~----~pd~G~I~~~~~~~i~~~~ 70 (638)
T PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINPGQ------KVGLVGKNGCGKSTLLALLKNEI----SADGGSYTFPGNWQLAWVN 70 (638)
T ss_pred CEEEEEEEEEeCCceeecCcEEEECCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCceEEecCCCEEEEEe
Confidence 489999999995 457999999999999 99999999999999999999998 8999986544331 111
Q ss_pred ccc-CC--Cccchh------------------------------------------------ccccCCCc---ccccchh
Q 005138 85 RCA-GI--EPCTLI------------------------------------------------MDLEGTDG---RERGEDD 110 (712)
Q Consensus 85 ~~~-~~--~~~~~v------------------------------------------------~d~~g~~~---~~r~~~~ 110 (712)
... .. ....++ ++..|+.. .......
T Consensus 71 q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~L 150 (638)
T PRK10636 71 QETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDF 150 (638)
T ss_pred cCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhc
Confidence 100 00 000000 01112210 1112234
Q ss_pred hHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccccccccee
Q 005138 111 TAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRE 187 (712)
Q Consensus 111 ~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~ 187 (712)
+.+||||++||++++ ++|||||||++||+.. ...+.+.+.++ +.|||+||||..++...|++++++.
T Consensus 151 SgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~------~~~L~~~L~~~----~~tviivsHd~~~l~~~~d~i~~L~ 220 (638)
T PRK10636 151 SGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDA------VIWLEKWLKSY----QGTLILISHDRDFLDPIVDKIIHIE 220 (638)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHH------HHHHHHHHHhC----CCeEEEEeCCHHHHHHhcCEEEEEe
Confidence 566999999999999 9999999999999998 88888887764 4699999999999998999999998
Q ss_pred cCCeEEE-ecCcc
Q 005138 188 DIQKIWD-SVPKP 199 (712)
Q Consensus 188 ~~G~I~~-~g~~~ 199 (712)
+ |++.. .|+..
T Consensus 221 ~-G~i~~~~g~~~ 232 (638)
T PRK10636 221 Q-QSLFEYTGNYS 232 (638)
T ss_pred C-CEEEEecCCHH
Confidence 8 99864 45433
No 282
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.85 E-value=7.2e-22 Score=201.17 Aligned_cols=159 Identities=14% Similarity=0.092 Sum_probs=116.0
Q ss_pred cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeee-ccCC-eeeccccCCCc-------cc
Q 005138 23 GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ-TTKG-IWMARCAGIEP-------CT 93 (712)
Q Consensus 23 ~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~-~t~g-i~~~~~~~~~~-------~~ 93 (712)
++++++++++.|+ +++|+||||||||||+++|+|+. +|++|++. ..+. ..+.......+ ..
T Consensus 2 vl~~vs~~i~~Ge------~~~l~G~NGsGKSTLlk~i~Gl~----~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~ 71 (213)
T PRK15177 2 VLDKTDFVMGYHE------HIGILAAPGSGKTTLTRLLCGLD----APDEGDFIGLRGDALPLGANSFILPGLTGEENAR 71 (213)
T ss_pred eeeeeeEEEcCCC------EEEEECCCCCCHHHHHHHHhCCc----cCCCCCEEEecCceeccccccccCCcCcHHHHHH
Confidence 5789999999999 99999999999999999999999 89999864 2221 11111111111 11
Q ss_pred hhccccCCCcc-----------------cccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHH
Q 005138 94 LIMDLEGTDGR-----------------ERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQ 153 (712)
Q Consensus 94 ~v~d~~g~~~~-----------------~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e 153 (712)
+.....+.... ......+.+|+||++||+|++ +++|+|||++++|+.. .+.+.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~------~~~~~~ 145 (213)
T PRK15177 72 MMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNAT------QLRMQA 145 (213)
T ss_pred HHHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHH------HHHHHH
Confidence 11111111111 011223445999999999999 9999999999999988 888888
Q ss_pred HHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCccc
Q 005138 154 VMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (712)
Q Consensus 154 ~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e 200 (712)
.+.+..+ +.++|++||+++.+...|++++++.+ |+++..++..+
T Consensus 146 ~l~~~~~--~~~ii~vsH~~~~~~~~~d~i~~l~~-G~i~~~~~~~~ 189 (213)
T PRK15177 146 ALACQLQ--QKGLIVLTHNPRLIKEHCHAFGVLLH-GKITMCEDLAQ 189 (213)
T ss_pred HHHHHhh--CCcEEEEECCHHHHHHhcCeeEEEEC-CeEEEeCCHHH
Confidence 7765433 45799999999988888999999988 99998876544
No 283
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.85 E-value=1.3e-21 Score=203.66 Aligned_cols=155 Identities=19% Similarity=0.140 Sum_probs=111.2
Q ss_pred cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC-Cee-eccccCCCccchhcc---
Q 005138 23 GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-GIW-MARCAGIEPCTLIMD--- 97 (712)
Q Consensus 23 ~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~-gi~-~~~~~~~~~~~~v~d--- 97 (712)
.+.++++++..|.. .+|++++|+|||||||||||++|+|+. +|++|++...+ .+. +...........+.+
T Consensus 9 ~~~~~~l~~~~~~i-~~Ge~~~i~G~NGsGKSTLlk~L~G~~----~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~ 83 (246)
T cd03237 9 TLGEFTLEVEGGSI-SESEVIGILGPNGIGKTTFIKMLAGVL----KPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLS 83 (246)
T ss_pred ccCcEEEEEecCCc-CCCCEEEEECCCCCCHHHHHHHHhCCC----cCCCCeEEECCceEEEecccccCCCCCCHHHHHH
Confidence 45677777765421 245599999999999999999999999 89999864433 121 111111111111111
Q ss_pred ------------------ccCCCcc--cccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHH
Q 005138 98 ------------------LEGTDGR--ERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQV 154 (712)
Q Consensus 98 ------------------~~g~~~~--~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~ 154 (712)
..|+... ......+..|+||++||+|++ +++|+||||++||+.. +..+.++
T Consensus 84 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~------~~~l~~~ 157 (246)
T cd03237 84 SITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQ------RLMASKV 157 (246)
T ss_pred HHhhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHH
Confidence 1111110 111223455999999999999 9999999999999998 9999999
Q ss_pred HHHhhCCCCceEEEEecCCCCcccccccccceec
Q 005138 155 MMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (712)
Q Consensus 155 l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~ 188 (712)
+.++.++.|+|+|+||||++.+...|++++++.+
T Consensus 158 l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~ 191 (246)
T cd03237 158 IRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEG 191 (246)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence 9998765689999999999998888999888865
No 284
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.85 E-value=2.3e-21 Score=221.44 Aligned_cols=172 Identities=10% Similarity=0.136 Sum_probs=130.0
Q ss_pred ccEEEEeeeeeeccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee----
Q 005138 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW---- 82 (712)
Q Consensus 8 ~~I~l~~l~k~y~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~---- 82 (712)
.+|++.|+++. ++++++|++..|+ +++|+||||||||||||+|+|+. +|++|++...+. +.
T Consensus 256 ~~l~~~~l~~~----~l~~vsl~i~~Ge------~~~liG~NGsGKSTLl~~l~G~~----~p~~G~I~~~g~~i~~~~~ 321 (501)
T PRK10762 256 VRLKVDNLSGP----GVNDVSFTLRKGE------ILGVSGLMGAGRTELMKVLYGAL----PRTSGYVTLDGHEVVTRSP 321 (501)
T ss_pred cEEEEeCcccC----CcccceEEEcCCc------EEEEecCCCCCHHHHHHHHhCCC----CCCceEEEECCEECCCCCH
Confidence 36889999862 5899999999999 99999999999999999999998 899998543210 00
Q ss_pred ---eccccCC----------Cccchhcc-------------------------------ccCCC-c--ccccchhhHHHH
Q 005138 83 ---MARCAGI----------EPCTLIMD-------------------------------LEGTD-G--RERGEDDTAFEK 115 (712)
Q Consensus 83 ---~~~~~~~----------~~~~~v~d-------------------------------~~g~~-~--~~r~~~~~~fer 115 (712)
....+++ .+...+.+ ..|+. . .......+..||
T Consensus 322 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGek 401 (501)
T PRK10762 322 QDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQ 401 (501)
T ss_pred HHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHH
Confidence 0001111 01011111 01111 0 111123345599
Q ss_pred HHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeE
Q 005138 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (712)
Q Consensus 116 Qrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I 192 (712)
||++||+|++ ++|||||||++||+.. ...+.+.+.++.++ |.|||+||||++.+...|++++++.+ |++
T Consensus 402 qrv~lA~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~-g~tviivtHd~~~~~~~~d~v~~l~~-G~i 473 (501)
T PRK10762 402 QKVAIARGLMTRPKVLILDEPTRGVDVGA------KKEIYQLINQFKAE-GLSIILVSSEMPEVLGMSDRILVMHE-GRI 473 (501)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCCCHhH------HHHHHHHHHHHHHC-CCEEEEEcCCHHHHHhhCCEEEEEEC-CEE
Confidence 9999999999 9999999999999999 99999999999765 99999999999999989999999988 999
Q ss_pred EEecCcccc
Q 005138 193 WDSVPKPQA 201 (712)
Q Consensus 193 ~~~g~~~e~ 201 (712)
+..+++++.
T Consensus 474 ~~~~~~~~~ 482 (501)
T PRK10762 474 SGEFTREQA 482 (501)
T ss_pred EEEeccccC
Confidence 988876554
No 285
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2e-21 Score=221.26 Aligned_cols=173 Identities=9% Similarity=0.099 Sum_probs=130.6
Q ss_pred ccEEEEeeeeeeccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee----
Q 005138 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW---- 82 (712)
Q Consensus 8 ~~I~l~~l~k~y~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~---- 82 (712)
.+|++.|+++.+. .+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+. +.
T Consensus 249 ~~i~~~~l~~~~~-~~l~~vsl~i~~Ge------~~~l~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~i~~~~~ 317 (491)
T PRK10982 249 VILEVRNLTSLRQ-PSIRDVSFDLHKGE------ILGIAGLVGAKRTDIVETLFGIR----EKSAGTITLHGKKINNHNA 317 (491)
T ss_pred cEEEEeCcccccC-cccceeeEEEeCCc------EEEEecCCCCCHHHHHHHHcCCC----cCCccEEEECCEECCCCCH
Confidence 3699999999863 47999999999999 99999999999999999999999 899998543210 00
Q ss_pred ---eccccCC----------Cccch-----hccc-------cC-------------------CC---cccccchhhHHHH
Q 005138 83 ---MARCAGI----------EPCTL-----IMDL-------EG-------------------TD---GRERGEDDTAFEK 115 (712)
Q Consensus 83 ---~~~~~~~----------~~~~~-----v~d~-------~g-------------------~~---~~~r~~~~~~fer 115 (712)
+...+++ .+... +.+. .+ +. ........+.+||
T Consensus 318 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~ 397 (491)
T PRK10982 318 NEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQ 397 (491)
T ss_pred HHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHH
Confidence 0000110 00000 0010 01 10 0011122344599
Q ss_pred HHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeE
Q 005138 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (712)
Q Consensus 116 Qrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I 192 (712)
||++||++++ ++|||||||+|||+.. +..+++++.++.+. |.|||+||||++++...|++++++.+ |++
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~------~~~~~~~l~~l~~~-~~tvi~vsHd~~~~~~~~d~v~~l~~-g~i 469 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGA------KFEIYQLIAELAKK-DKGIIIISSEMPELLGITDRILVMSN-GLV 469 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhH------HHHHHHHHHHHHHC-CCEEEEECCChHHHHhhCCEEEEEEC-CEE
Confidence 9999999999 9999999999999999 99999999998765 99999999999999889999999988 999
Q ss_pred EEecCcc
Q 005138 193 WDSVPKP 199 (712)
Q Consensus 193 ~~~g~~~ 199 (712)
+..++.+
T Consensus 470 ~~~~~~~ 476 (491)
T PRK10982 470 AGIVDTK 476 (491)
T ss_pred EEEEccc
Confidence 9877654
No 286
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.85 E-value=1.4e-21 Score=246.95 Aligned_cols=175 Identities=12% Similarity=0.145 Sum_probs=134.7
Q ss_pred ccEEEEeeeeeec---cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee-
Q 005138 8 CSTQLIDGDGTFN---VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW- 82 (712)
Q Consensus 8 ~~I~l~~l~k~y~---~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~- 82 (712)
..|++.|++|.|+ ..+++++++++..|+ +++|+||||||||||||+|+|+. +|++|++...+. +.
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Ge------i~aLLG~NGAGKSTLLkiLaGLl----~PtsG~I~i~G~dI~~ 996 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQ------ITAFLGHNGAGKTTTLSILTGLL----PPTSGTVLVGGKDIET 996 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCc------EEEEECCCCChHHHHHHHHhcCC----CCCceEEEECCEECcc
Confidence 4799999999994 347999999999999 99999999999999999999999 899998543221 10
Q ss_pred ----eccccCC-------Cccchhcc-------ccCCCcc--------------------cccchhhHHHHHHHHHHHHH
Q 005138 83 ----MARCAGI-------EPCTLIMD-------LEGTDGR--------------------ERGEDDTAFEKQSALFALAV 124 (712)
Q Consensus 83 ----~~~~~~~-------~~~~~v~d-------~~g~~~~--------------------~r~~~~~~ferQrv~~A~Al 124 (712)
.++.+++ .+...+.+ ..|.... ......+.+||||+++|+|+
T Consensus 997 ~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArAL 1076 (2272)
T TIGR01257 997 NLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAF 1076 (2272)
T ss_pred hHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 0011111 11111111 1121110 11122345599999999999
Q ss_pred H---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccc
Q 005138 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (712)
Q Consensus 125 a---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~ 201 (712)
+ ++|||||||+|||+.. ++.++++++++. + |+|||++|||++++..+||+++++.+ |++...|++..+
T Consensus 1077 i~~PkVLLLDEPTSGLDp~s------r~~l~~lL~~l~-~-g~TIIltTHdmdea~~laDrI~iL~~-GkL~~~Gs~~~L 1147 (2272)
T TIGR01257 1077 VGDAKVVVLDEPTSGVDPYS------RRSIWDLLLKYR-S-GRTIIMSTHHMDEADLLGDRIAIISQ-GRLYCSGTPLFL 1147 (2272)
T ss_pred HcCCCEEEEECCCcCCCHHH------HHHHHHHHHHHh-C-CCEEEEEECCHHHHHHhCCEEEEEEC-CEEEEecCHHHH
Confidence 9 9999999999999999 999999999984 4 89999999999999989999999998 999999987654
No 287
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.85 E-value=4e-21 Score=192.74 Aligned_cols=153 Identities=12% Similarity=0.097 Sum_probs=110.9
Q ss_pred cEEEEeeeeeeccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-e------
Q 005138 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-I------ 81 (712)
Q Consensus 9 ~I~l~~l~k~y~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i------ 81 (712)
||.+.++++.|+...+.+++++++.|+ +++|+|+||||||||+++|+|+. +|++|++...+. +
T Consensus 1 ~l~~~~l~~~~~~~~l~~vs~~i~~Ge------~~~l~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~i~~~~~~ 70 (195)
T PRK13541 1 MLSLHQLQFNIEQKNLFDLSITFLPSA------ITYIKGANGCGKSSLLRMIAGIM----QPSSGNIYYKNCNINNIAKP 70 (195)
T ss_pred CeEEEEeeEEECCcEEEEEEEEEcCCc------EEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEECCcccChhhhh
Confidence 488999999996545556999999999 99999999999999999999999 899998543321 1
Q ss_pred ---eeccccCCCccchhccc--------------------cCCCc--ccccchhhHHHHHHHHHHHHHH---HHhhhccc
Q 005138 82 ---WMARCAGIEPCTLIMDL--------------------EGTDG--RERGEDDTAFEKQSALFALAVS---DIVLINMW 133 (712)
Q Consensus 82 ---~~~~~~~~~~~~~v~d~--------------------~g~~~--~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP 133 (712)
++...........+.+. .|+.. .......+..|+||+++|+|++ +++|+|||
T Consensus 71 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP 150 (195)
T PRK13541 71 YCTYIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEV 150 (195)
T ss_pred hEEeccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 01111111111111110 01110 0111223445999999999999 99999999
Q ss_pred cCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccc
Q 005138 134 CHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPL 178 (712)
Q Consensus 134 ~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~ 178 (712)
|++||+.. ...+.+++.+..+ .|.|+|+|||+.+.++.
T Consensus 151 ~~~LD~~~------~~~l~~~l~~~~~-~~~tiii~sh~~~~i~~ 188 (195)
T PRK13541 151 ETNLSKEN------RDLLNNLIVMKAN-SGGIVLLSSHLESSIKS 188 (195)
T ss_pred cccCCHHH------HHHHHHHHHHHHh-CCCEEEEEeCCccccch
Confidence 99999998 8899998876654 48999999999988774
No 288
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.85 E-value=1.5e-21 Score=222.82 Aligned_cols=172 Identities=18% Similarity=0.212 Sum_probs=129.6
Q ss_pred cEEEEeeeeeeccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-e------
Q 005138 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-I------ 81 (712)
Q Consensus 9 ~I~l~~l~k~y~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i------ 81 (712)
.+++.|++.. .+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+. +
T Consensus 257 ~l~~~~~~~~---~~l~~isl~i~~Ge------~~~iiG~NGsGKSTLlk~l~G~~----~p~~G~i~~~g~~~~~~~~~ 323 (501)
T PRK11288 257 RLRLDGLKGP---GLREPISFSVRAGE------IVGLFGLVGAGRSELMKLLYGAT----RRTAGQVYLDGKPIDIRSPR 323 (501)
T ss_pred EEEEeccccC---CcccceeEEEeCCc------EEEEEcCCCCCHHHHHHHHcCCC----cCCCceEEECCEECCCCCHH
Confidence 5788888743 37899999999999 99999999999999999999999 899998543210 0
Q ss_pred --------eecccc---CCCccchhccc-------------------------------cCCC---cccccchhhHHHHH
Q 005138 82 --------WMARCA---GIEPCTLIMDL-------------------------------EGTD---GRERGEDDTAFEKQ 116 (712)
Q Consensus 82 --------~~~~~~---~~~~~~~v~d~-------------------------------~g~~---~~~r~~~~~~ferQ 116 (712)
++.... +..+...+.+. .|+. ........+..|||
T Consensus 324 ~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~q 403 (501)
T PRK11288 324 DAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQ 403 (501)
T ss_pred HHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHH
Confidence 000000 01111111111 0110 00011223445999
Q ss_pred HHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEE
Q 005138 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (712)
Q Consensus 117 rv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~ 193 (712)
|+++|++++ ++|||||||++||+.. +..+++++.++.+. |.|||+||||++.+...|++++++.+ |+++
T Consensus 404 rl~la~al~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~l~~~-g~tviivsHd~~~~~~~~d~i~~l~~-g~i~ 475 (501)
T PRK11288 404 KAILGRWLSEDMKVILLDEPTRGIDVGA------KHEIYNVIYELAAQ-GVAVLFVSSDLPEVLGVADRIVVMRE-GRIA 475 (501)
T ss_pred HHHHHHHHccCCCEEEEcCCCCCCCHhH------HHHHHHHHHHHHhC-CCEEEEECCCHHHHHhhCCEEEEEEC-CEEE
Confidence 999999999 9999999999999999 99999999999765 99999999999999999999999988 9999
Q ss_pred EecCcccc
Q 005138 194 DSVPKPQA 201 (712)
Q Consensus 194 ~~g~~~e~ 201 (712)
..|++++.
T Consensus 476 ~~~~~~~~ 483 (501)
T PRK11288 476 GELAREQA 483 (501)
T ss_pred EEEccccC
Confidence 99987654
No 289
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.85 E-value=2.2e-21 Score=198.80 Aligned_cols=163 Identities=15% Similarity=0.226 Sum_probs=116.6
Q ss_pred ccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC--------e-eeccccCCC--ccchhccc
Q 005138 30 EVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG--------I-WMARCAGIE--PCTLIMDL 98 (712)
Q Consensus 30 ~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g--------i-~~~~~~~~~--~~~~v~d~ 98 (712)
+++.|+ +++|+||||||||||+++|+|+. +|++|++...+. + ++....... ....+.+.
T Consensus 2 ~i~~Ge------~~~l~G~nGsGKSTLl~~l~G~~----~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~ 71 (223)
T TIGR03771 2 SADKGE------LLGLLGPNGAGKTTLLRAILGLI----PPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHT 71 (223)
T ss_pred ccCCCc------EEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHH
Confidence 456666 99999999999999999999998 899998543221 1 111110000 00111111
Q ss_pred c-----------------------------CCCc--ccccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhC
Q 005138 99 E-----------------------------GTDG--RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAAN 144 (712)
Q Consensus 99 ~-----------------------------g~~~--~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~ 144 (712)
. |+.. .......+..|+||+++|+|++ +++|+||||++||+..
T Consensus 72 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~--- 148 (223)
T TIGR03771 72 VMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPT--- 148 (223)
T ss_pred HHhccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH---
Confidence 0 0000 0001112334999999999999 9999999999999999
Q ss_pred hhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccccCCccchhhh
Q 005138 145 KPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHMETPLSEFF 211 (712)
Q Consensus 145 ~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~~~~~l~d~f 211 (712)
.+.+.+.+.++.++ |.|+|++|||++.+...|++++++ + |+++..|++++...+..+.+.|
T Consensus 149 ---~~~l~~~l~~~~~~-~~tvii~sH~~~~~~~~~d~i~~l-~-G~i~~~~~~~~~~~~~~~~~~~ 209 (223)
T TIGR03771 149 ---QELLTELFIELAGA-GTAILMTTHDLAQAMATCDRVVLL-N-GRVIADGTPQQLQDPAPWMTTF 209 (223)
T ss_pred ---HHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEE-C-CEEEeecCHHHhcChHHHHHHh
Confidence 99999999998754 899999999999888889998887 7 9999999887766554444444
No 290
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.85 E-value=3e-21 Score=219.87 Aligned_cols=172 Identities=20% Similarity=0.249 Sum_probs=124.8
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCC-CCCeeeccC-----C
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA-FKGRSQTTK-----G 80 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p-~sG~~~~t~-----g 80 (712)
++|++.|+++.|+ ..+++++++++..|+ +++|+||||||||||||+|+|+. ++ ++|++...+ +
T Consensus 259 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge------~~~i~G~NGsGKSTLl~~l~G~~----~~~~~G~i~~~g~~~~~~ 328 (490)
T PRK10938 259 PRIVLNNGVVSYNDRPILHNLSWQVNPGE------HWQIVGPNGAGKSTLLSLITGDH----PQGYSNDLTLFGRRRGSG 328 (490)
T ss_pred ceEEEeceEEEECCeeEEeeceEEEcCCC------EEEEECCCCCCHHHHHHHHcCCC----CcccCCeEEEecccCCCC
Confidence 4799999999995 447999999999999 99999999999999999999987 54 578743211 0
Q ss_pred -e-e-eccccCC--------Ccc-chhcc-----------------------------ccCCCc---ccccchhhHHHHH
Q 005138 81 -I-W-MARCAGI--------EPC-TLIMD-----------------------------LEGTDG---RERGEDDTAFEKQ 116 (712)
Q Consensus 81 -i-~-~~~~~~~--------~~~-~~v~d-----------------------------~~g~~~---~~r~~~~~~ferQ 116 (712)
. + ....+++ ... ..+.+ ..|+.. .......+..|||
T Consensus 329 ~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~q 408 (490)
T PRK10938 329 ETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQR 408 (490)
T ss_pred CCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHH
Confidence 0 0 0011111 000 00100 011111 0011223345999
Q ss_pred HHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccc-ccccccceecCCeE
Q 005138 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPL-ENLEPVLREDIQKI 192 (712)
Q Consensus 117 rv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~-~~~~~~ll~~~G~I 192 (712)
|++||+|++ ++||+||||++||+.. ...+.+.+.++.++.++|||+||||++.+.. .|++++++.+ |+|
T Consensus 409 rv~la~al~~~p~lllLDEPt~gLD~~~------~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~-G~i 481 (490)
T PRK10938 409 LALIVRALVKHPTLLILDEPLQGLDPLN------RQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPD-GDI 481 (490)
T ss_pred HHHHHHHHhcCCCEEEEcCccccCCHHH------HHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecC-Cce
Confidence 999999999 9999999999999999 9999999999976534679999999998876 4788888888 998
Q ss_pred EEec
Q 005138 193 WDSV 196 (712)
Q Consensus 193 ~~~g 196 (712)
+...
T Consensus 482 ~~~~ 485 (490)
T PRK10938 482 YRYV 485 (490)
T ss_pred EEee
Confidence 7653
No 291
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=2.4e-21 Score=187.48 Aligned_cols=149 Identities=17% Similarity=0.225 Sum_probs=117.0
Q ss_pred EEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccc---c
Q 005138 12 LIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC---A 87 (712)
Q Consensus 12 l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~---~ 87 (712)
+.++++.|. ..+++++++++..|+ +++|+|+||||||||+++|+|.. +|.+|++...+ ...... .
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~i~~g~------~~~i~G~nGsGKStll~~l~g~~----~~~~G~i~~~~-~~~~~~~~~~ 70 (157)
T cd00267 2 IENLSFRYGGRTALDNVSLTLKAGE------IVALVGPNGSGKSTLLRAIAGLL----KPTSGEILIDG-KDIAKLPLEE 70 (157)
T ss_pred eEEEEEEeCCeeeEeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECC-EEcccCCHHH
Confidence 567888884 347999999999999 99999999999999999999999 78888753222 111000 0
Q ss_pred CCCccchhccccCCCcccccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCc
Q 005138 88 GIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKT 164 (712)
Q Consensus 88 ~~~~~~~v~d~~g~~~~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~ 164 (712)
......++.+ ....|+||+++|++++ +++|+|||+++||+.. ...+.+.+.++.+. +.
T Consensus 71 ~~~~i~~~~q------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~------~~~l~~~l~~~~~~-~~ 131 (157)
T cd00267 71 LRRRIGYVPQ------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPAS------RERLLELLRELAEE-GR 131 (157)
T ss_pred HHhceEEEee------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH------HHHHHHHHHHHHHC-CC
Confidence 0000011111 4677999999999999 9999999999999998 89999999988765 79
Q ss_pred eEEEEecCCCCcccccccccceecCCe
Q 005138 165 TLMFVIRDKTRTPLENLEPVLREDIQK 191 (712)
Q Consensus 165 tiL~VtHDl~~~~~~~~~~~ll~~~G~ 191 (712)
|+|++||+++.+...|++++++.+ |+
T Consensus 132 tii~~sh~~~~~~~~~d~i~~l~~-g~ 157 (157)
T cd00267 132 TVIIVTHDPELAELAADRVIVLKD-GK 157 (157)
T ss_pred EEEEEeCCHHHHHHhCCEEEEEeC-cC
Confidence 999999999998888899888876 53
No 292
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.84 E-value=1.9e-21 Score=187.94 Aligned_cols=181 Identities=14% Similarity=0.171 Sum_probs=138.0
Q ss_pred cccEEEEeeeeeecc----------ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeee
Q 005138 7 CCSTQLIDGDGTFNV----------SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ 76 (712)
Q Consensus 7 ~~~I~l~~l~k~y~~----------~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~ 76 (712)
+..+++.|++|.|.. .+++.|+|++..|. .++|||.||||||||.++|.|+. +|++|++.
T Consensus 2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~Q------TlaiIG~NGSGKSTLakMlaGmi----~PTsG~il 71 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQ------TLAIIGENGSGKSTLAKMLAGMI----EPTSGEIL 71 (267)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCc------EEEEEccCCCcHhHHHHHHhccc----CCCCceEE
Confidence 356899999999832 36889999999999 99999999999999999999999 99999965
Q ss_pred ccCCee-e------cccc---------CCCccc---hhcccc-----CCCcccccc---------------------hhh
Q 005138 77 TTKGIW-M------ARCA---------GIEPCT---LIMDLE-----GTDGRERGE---------------------DDT 111 (712)
Q Consensus 77 ~t~gi~-~------~~~~---------~~~~~~---~v~d~~-----g~~~~~r~~---------------------~~~ 111 (712)
..+... + ++.+ ...+.. -++|.. .+++..|.+ ...
T Consensus 72 ~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la 151 (267)
T COG4167 72 INDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLA 151 (267)
T ss_pred ECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcC
Confidence 433211 0 0000 000000 011110 011111100 011
Q ss_pred HHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceec
Q 005138 112 AFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (712)
Q Consensus 112 ~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~ 188 (712)
..|||||++|+|+. +++|.||..++||..- +.++..++++|.++.|.+.|.|++++..+..++|.+++|.+
T Consensus 152 ~~QKQRVaLARALIL~P~iIIaDeAl~~LD~sm------rsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~E 225 (267)
T COG4167 152 PGQKQRVALARALILRPKIIIADEALASLDMSM------RSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHE 225 (267)
T ss_pred chhHHHHHHHHHHhcCCcEEEehhhhhhccHHH------HHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEec
Confidence 22999999999999 9999999999999877 99999999999988999999999999999999999999999
Q ss_pred CCeEEEecCcccccCC
Q 005138 189 IQKIWDSVPKPQAHME 204 (712)
Q Consensus 189 ~G~I~~~g~~~e~~~~ 204 (712)
|+++..|++.+++.+
T Consensus 226 -G~vvE~G~t~~v~a~ 240 (267)
T COG4167 226 -GEVVERGSTADVLAS 240 (267)
T ss_pred -CceeecCChhhhhcC
Confidence 999999999888754
No 293
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=1.7e-21 Score=199.33 Aligned_cols=156 Identities=17% Similarity=0.183 Sum_probs=119.8
Q ss_pred EEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccc-----------cCC-------Cccchhcccc--CC
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC-----------AGI-------EPCTLIMDLE--GT 101 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~-----------~~~-------~~~~~v~d~~--g~ 101 (712)
|++|+|++|||||||+|+|+|+. +|+.|++...+..+.... +|| .+.+.|..+. |.
T Consensus 26 vTAlFG~SGsGKTslin~IaGL~----rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~ 101 (352)
T COG4148 26 ITALFGPSGSGKTSLINMIAGLT----RPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGM 101 (352)
T ss_pred eEEEecCCCCChhhHHHHHhccC----CccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhh
Confidence 99999999999999999999999 999999654433333221 221 1111111110 11
Q ss_pred Cccc-------------------ccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhh
Q 005138 102 DGRE-------------------RGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLF 159 (712)
Q Consensus 102 ~~~~-------------------r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~ 159 (712)
.... .....+..|||||+|++||. ++|+||||.+.||... .++++-.+.+|.
T Consensus 102 ~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~R------K~EilpylERL~ 175 (352)
T COG4148 102 WKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR------KREILPYLERLR 175 (352)
T ss_pred cccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccch------hhHHHHHHHHHH
Confidence 1110 11122334999999999999 9999999999999877 999999999999
Q ss_pred CCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccccCCccch
Q 005138 160 SPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHMETPLS 208 (712)
Q Consensus 160 ~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~~~~~l~ 208 (712)
++.++.|++|||.++++.++++++++|.+ |++.+.|+.++++....+.
T Consensus 176 ~e~~IPIlYVSHS~~Ev~RLAd~vV~le~-GkV~A~g~~e~v~~~~~~~ 223 (352)
T COG4148 176 DEINIPILYVSHSLDEVLRLADRVVVLEN-GKVKASGPLEEVWGSPDFP 223 (352)
T ss_pred HhcCCCEEEEecCHHHHHhhhheEEEecC-CeEEecCcHHHHhcCcccC
Confidence 99999999999999999999999999999 9999999999888665443
No 294
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.84 E-value=3.7e-21 Score=223.39 Aligned_cols=175 Identities=16% Similarity=0.159 Sum_probs=133.4
Q ss_pred cEEEEeeeeeec---cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeee--
Q 005138 9 STQLIDGDGTFN---VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM-- 83 (712)
Q Consensus 9 ~I~l~~l~k~y~---~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~-- 83 (712)
.|+++|+++.|+ ..+++++++++++|+ .++|+|+||||||||+++|+|+. +|++|++...+ ..+
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~------~~aIvG~sGsGKSTLl~ll~gl~----~p~~G~I~i~g-~~i~~ 409 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGK------TVALVGRSGSGKSTIANLLTRFY----DIDEGEILLDG-HDLRD 409 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCCCC------EEEEECCCCCCHHHHHHHHHhcc----CCCCceEEECC-EEhhh
Confidence 599999999994 237999999999999 99999999999999999999999 99999853221 110
Q ss_pred ------ccccCC-------------Cccchh-------------cccc-----------CCCc--ccccchhhHHHHHHH
Q 005138 84 ------ARCAGI-------------EPCTLI-------------MDLE-----------GTDG--RERGEDDTAFEKQSA 118 (712)
Q Consensus 84 ------~~~~~~-------------~~~~~v-------------~d~~-----------g~~~--~~r~~~~~~ferQrv 118 (712)
...+++ +|..+. ++.. |.+. .+.+...+++||||+
T Consensus 410 ~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi 489 (582)
T PRK11176 410 YTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRI 489 (582)
T ss_pred cCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHH
Confidence 011110 111110 0000 1111 122334567799999
Q ss_pred HHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEe
Q 005138 119 LFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (712)
Q Consensus 119 ~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~ 195 (712)
++|||+. ++||+||||++||+.. ...+++.+.++.+ ++|+|+|||+++.+. .||+++++++ |++.+.
T Consensus 490 ~LARall~~~~ililDEptsaLD~~t------~~~i~~~l~~~~~--~~tvI~VtHr~~~~~-~~D~Ii~l~~-g~i~e~ 559 (582)
T PRK11176 490 AIARALLRDSPILILDEATSALDTES------ERAIQAALDELQK--NRTSLVIAHRLSTIE-KADEILVVED-GEIVER 559 (582)
T ss_pred HHHHHHHhCCCEEEEECccccCCHHH------HHHHHHHHHHHhC--CCEEEEEecchHHHH-hCCEEEEEEC-CEEEEe
Confidence 9999999 9999999999999998 8899999998753 699999999997765 4999999988 999999
Q ss_pred cCcccccCC
Q 005138 196 VPKPQAHME 204 (712)
Q Consensus 196 g~~~e~~~~ 204 (712)
|+.++..+.
T Consensus 560 g~~~~l~~~ 568 (582)
T PRK11176 560 GTHAELLAQ 568 (582)
T ss_pred CCHHHHHhC
Confidence 998776643
No 295
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.84 E-value=3.3e-21 Score=205.29 Aligned_cols=180 Identities=17% Similarity=0.176 Sum_probs=136.7
Q ss_pred ccEEEEeeeeeecc------------ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCee
Q 005138 8 CSTQLIDGDGTFNV------------SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS 75 (712)
Q Consensus 8 ~~I~l~~l~k~y~~------------~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~ 75 (712)
..++..++...|.. .+++++++++..|+ -+||+|.+|||||||-.+|.+++ +++|++
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gq------TlGlVGESGSGKsTlG~allrL~-----~s~G~I 343 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQ------TLGLVGESGSGKSTLGLALLRLI-----PSQGEI 343 (534)
T ss_pred ceEEecceEEEEecCCccccccchheEEeccceeEecCCC------eEEEEecCCCCcchHHHHHHhhc-----CcCceE
Confidence 46899999988831 25789999999999 99999999999999999999999 555874
Q ss_pred eccCC-ee-ecc--ccC--CCccchhcccc----------------------------------------CCCccccc--
Q 005138 76 QTTKG-IW-MAR--CAG--IEPCTLIMDLE----------------------------------------GTDGRERG-- 107 (712)
Q Consensus 76 ~~t~g-i~-~~~--~~~--~~~~~~v~d~~----------------------------------------g~~~~~r~-- 107 (712)
...+. +. +.. ... ..-..++.|.. |+++..+.
T Consensus 344 ~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RY 423 (534)
T COG4172 344 RFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRY 423 (534)
T ss_pred EECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcC
Confidence 32221 00 000 000 01111222222 22222111
Q ss_pred -chhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccc
Q 005138 108 -EDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEP 183 (712)
Q Consensus 108 -~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~ 183 (712)
-+-++.||||++||+|++ ++++|||||++||..- +.+|++++++|.+++|.+-||+|||+..+..+|+++
T Consensus 424 PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SV------QaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~v 497 (534)
T COG4172 424 PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSV------QAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRV 497 (534)
T ss_pred CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHH------HHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceE
Confidence 011233999999999999 9999999999999987 999999999999999999999999999999999999
Q ss_pred cceecCCeEEEecCcccccCCc
Q 005138 184 VLREDIQKIWDSVPKPQAHMET 205 (712)
Q Consensus 184 ~ll~~~G~I~~~g~~~e~~~~~ 205 (712)
++|.+ |+|+..|+.+++|.+.
T Consensus 498 iVm~~-GkiVE~G~~~~if~~P 518 (534)
T COG4172 498 IVMRD-GKIVEQGPTEAVFANP 518 (534)
T ss_pred EEEeC-CEEeeeCCHHHHhcCC
Confidence 99999 9999999998887653
No 296
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.84 E-value=6.7e-21 Score=225.39 Aligned_cols=172 Identities=18% Similarity=0.169 Sum_probs=131.8
Q ss_pred cEEEEeeeeeec---cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeee--
Q 005138 9 STQLIDGDGTFN---VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM-- 83 (712)
Q Consensus 9 ~I~l~~l~k~y~---~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~-- 83 (712)
.|+++|+++.|+ ..+|+++++++++|+ .++|+|+||||||||+|+|+|+. +|++|++...+ ..+
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge------~vaIvG~sGsGKSTLlklL~gl~----~p~~G~I~idg-~~i~~ 519 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGE------FVAIVGPSGSGKSTLLRLLLGFE----TPESGSVFYDG-QDLAG 519 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCCEEEECC-EEcCc
Confidence 599999999994 247999999999999 99999999999999999999999 89999854332 111
Q ss_pred ------ccccCC-------------Cccch-----------hcccc-----------CCC--cccccchhhHHHHHHHHH
Q 005138 84 ------ARCAGI-------------EPCTL-----------IMDLE-----------GTD--GRERGEDDTAFEKQSALF 120 (712)
Q Consensus 84 ------~~~~~~-------------~~~~~-----------v~d~~-----------g~~--~~~r~~~~~~ferQrv~~ 120 (712)
+..+++ +|..+ +.+.. |.+ -.+.+...+.+||||+++
T Consensus 520 ~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRial 599 (686)
T TIGR03797 520 LDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLI 599 (686)
T ss_pred CCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHH
Confidence 111110 11100 00111 111 112233456779999999
Q ss_pred HHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecC
Q 005138 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (712)
Q Consensus 121 A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~ 197 (712)
|||+. ++|||||||++||+.. .+.+++.+.++ ++|+|+|||+++.+.. +|+++++++ |+++..|+
T Consensus 600 ARAll~~p~iLiLDEpTS~LD~~t------e~~i~~~L~~~----~~T~IiItHr~~~i~~-~D~Iivl~~-G~iv~~G~ 667 (686)
T TIGR03797 600 ARALVRKPRILLFDEATSALDNRT------QAIVSESLERL----KVTRIVIAHRLSTIRN-ADRIYVLDA-GRVVQQGT 667 (686)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHH------HHHHHHHHHHh----CCeEEEEecChHHHHc-CCEEEEEEC-CEEEEECC
Confidence 99999 9999999999999998 88898888775 4799999999987764 899999988 99999999
Q ss_pred cccccC
Q 005138 198 KPQAHM 203 (712)
Q Consensus 198 ~~e~~~ 203 (712)
.++..+
T Consensus 668 ~~~Ll~ 673 (686)
T TIGR03797 668 YDELMA 673 (686)
T ss_pred HHHHHh
Confidence 877654
No 297
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.84 E-value=6.1e-21 Score=226.62 Aligned_cols=172 Identities=20% Similarity=0.176 Sum_probs=132.3
Q ss_pred cEEEEeeeeeec---cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeee--
Q 005138 9 STQLIDGDGTFN---VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM-- 83 (712)
Q Consensus 9 ~I~l~~l~k~y~---~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~-- 83 (712)
.|++.|+++.|+ ..+|+++++++++|+ .++|+||||||||||+++|+|+. +|++|++...+ ..+
T Consensus 477 ~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge------~vaIvG~sGsGKSTLlklL~gl~----~p~~G~I~idg-~~i~~ 545 (710)
T TIGR03796 477 YVELRNITFGYSPLEPPLIENFSLTLQPGQ------RVALVGGSGSGKSTIAKLVAGLY----QPWSGEILFDG-IPREE 545 (710)
T ss_pred eEEEEEEEEecCCCCCCcccceeEEEcCCC------EEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEECC-EeHHH
Confidence 599999999995 347999999999999 99999999999999999999999 89999854322 110
Q ss_pred ------ccccCC-------------Cccchh------------ccc-----------cCCCc--ccccchhhHHHHHHHH
Q 005138 84 ------ARCAGI-------------EPCTLI------------MDL-----------EGTDG--RERGEDDTAFEKQSAL 119 (712)
Q Consensus 84 ------~~~~~~-------------~~~~~v------------~d~-----------~g~~~--~~r~~~~~~ferQrv~ 119 (712)
++.+++ +|..+. .+. .|.+. .+.+...+++||||++
T Consensus 546 ~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRia 625 (710)
T TIGR03796 546 IPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLE 625 (710)
T ss_pred CCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHH
Confidence 111110 111000 000 01111 1333445677999999
Q ss_pred HHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEec
Q 005138 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 120 ~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g 196 (712)
+|||+. ++|||||||++||+.. .+.+++.+.+ .++|+|+|||+++.+.. ||+++++++ |+++..|
T Consensus 626 LARall~~p~iliLDEptS~LD~~t------e~~i~~~l~~----~~~T~IiitHrl~~i~~-~D~Iivl~~-G~i~~~G 693 (710)
T TIGR03796 626 IARALVRNPSILILDEATSALDPET------EKIIDDNLRR----RGCTCIIVAHRLSTIRD-CDEIIVLER-GKVVQRG 693 (710)
T ss_pred HHHHHhhCCCEEEEECccccCCHHH------HHHHHHHHHh----cCCEEEEEecCHHHHHh-CCEEEEEeC-CEEEEec
Confidence 999999 9999999999999998 8888888875 37899999999987765 899999988 9999999
Q ss_pred CcccccC
Q 005138 197 PKPQAHM 203 (712)
Q Consensus 197 ~~~e~~~ 203 (712)
+.+++.+
T Consensus 694 ~~~~Ll~ 700 (710)
T TIGR03796 694 THEELWA 700 (710)
T ss_pred CHHHHHH
Confidence 9887764
No 298
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.84 E-value=9.8e-21 Score=220.38 Aligned_cols=174 Identities=16% Similarity=0.137 Sum_probs=133.5
Q ss_pred cEEEEeeeeeec--cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeee---
Q 005138 9 STQLIDGDGTFN--VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM--- 83 (712)
Q Consensus 9 ~I~l~~l~k~y~--~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~--- 83 (712)
.|+++|++..|+ ..+++++++++++|+ .++|+|+||||||||+++|+|+. +|++|++...+ ..+
T Consensus 340 ~i~~~~v~f~y~~~~~il~~i~l~i~~Ge------~iaIvG~SGsGKSTLl~lL~gl~----~p~~G~I~idg-~~i~~~ 408 (592)
T PRK10790 340 RIDIDNVSFAYRDDNLVLQNINLSVPSRG------FVALVGHTGSGKSTLASLLMGYY----PLTEGEIRLDG-RPLSSL 408 (592)
T ss_pred eEEEEEEEEEeCCCCceeeceeEEEcCCC------EEEEECCCCCCHHHHHHHHhccc----CCCCceEEECC-EEhhhC
Confidence 499999999994 347999999999999 99999999999999999999999 89999854322 111
Q ss_pred -----ccccCC-------------Cccch-----------hcccc-----------CCCc--ccccchhhHHHHHHHHHH
Q 005138 84 -----ARCAGI-------------EPCTL-----------IMDLE-----------GTDG--RERGEDDTAFEKQSALFA 121 (712)
Q Consensus 84 -----~~~~~~-------------~~~~~-----------v~d~~-----------g~~~--~~r~~~~~~ferQrv~~A 121 (712)
.+.+++ +|..+ +.+.. |.+. .+.+...+.+||||+++|
T Consensus 409 ~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialA 488 (592)
T PRK10790 409 SHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALA 488 (592)
T ss_pred CHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 111110 00000 00000 1111 123334566799999999
Q ss_pred HHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCc
Q 005138 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (712)
Q Consensus 122 ~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~ 198 (712)
||+. ++||+||||++||+.. .+.+.+.+.++.+ ++|+|+|||+++.... ||+++++++ |+++..|+.
T Consensus 489 RaLl~~~~illlDEpts~LD~~t------~~~i~~~l~~~~~--~~tvIivtHr~~~l~~-~D~ii~l~~-G~i~~~G~~ 558 (592)
T PRK10790 489 RVLVQTPQILILDEATANIDSGT------EQAIQQALAAVRE--HTTLVVIAHRLSTIVE-ADTILVLHR-GQAVEQGTH 558 (592)
T ss_pred HHHHhCCCEEEEeCCcccCCHHH------HHHHHHHHHHHhC--CCEEEEEecchHHHHh-CCEEEEEEC-CEEEEEcCH
Confidence 9999 9999999999999998 8999999998853 6899999999977664 899999988 999999998
Q ss_pred ccccC
Q 005138 199 PQAHM 203 (712)
Q Consensus 199 ~e~~~ 203 (712)
++..+
T Consensus 559 ~~L~~ 563 (592)
T PRK10790 559 QQLLA 563 (592)
T ss_pred HHHHh
Confidence 77653
No 299
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.84 E-value=4e-21 Score=190.39 Aligned_cols=175 Identities=18% Similarity=0.196 Sum_probs=130.9
Q ss_pred cEEEEeeeeeec------cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee
Q 005138 9 STQLIDGDGTFN------VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW 82 (712)
Q Consensus 9 ~I~l~~l~k~y~------~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~ 82 (712)
|+.+.|..+.|. ..++++++++|..|+ +|.|+|+||||||||+|+|+|.. .|++|++...+- -
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~------FvtViGsNGAGKSTlln~iaG~l----~~t~G~I~Idg~-d 69 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGD------FVTVIGSNGAGKSTLLNAIAGDL----KPTSGQILIDGV-D 69 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCc------eEEEEcCCCccHHHHHHHhhCcc----ccCCceEEECce-e
Confidence 477888888884 246899999999999 99999999999999999999999 899999543221 1
Q ss_pred eccc-----------------cCC------CccchhccccC----CCcc-----------------------c--ccchh
Q 005138 83 MARC-----------------AGI------EPCTLIMDLEG----TDGR-----------------------E--RGEDD 110 (712)
Q Consensus 83 ~~~~-----------------~~~------~~~~~v~d~~g----~~~~-----------------------~--r~~~~ 110 (712)
+.+. .|. +.++.+.+..| +... . +.+..
T Consensus 70 Vtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglL 149 (263)
T COG1101 70 VTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLL 149 (263)
T ss_pred cccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhc
Confidence 1000 000 11111222221 1110 0 00111
Q ss_pred hHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccccccccee
Q 005138 111 TAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRE 187 (712)
Q Consensus 111 ~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~ 187 (712)
+..|||.+++++|.. ++|+|||-|++|||.. ...|++.-.++.++.+.|.+||||+++.+..+..|.++++
T Consensus 150 SGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkt------a~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh 223 (263)
T COG1101 150 SGGQRQALSLLMATLHPPKILLLDEHTAALDPKT------AEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLH 223 (263)
T ss_pred cchHHHHHHHHHHhcCCCcEEEecchhhcCCcch------HHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEe
Confidence 233999999999998 9999999999999998 8899999999888889999999999999888777777777
Q ss_pred cCCeEEEecCcccc
Q 005138 188 DIQKIWDSVPKPQA 201 (712)
Q Consensus 188 ~~G~I~~~g~~~e~ 201 (712)
. |+|+.+...++-
T Consensus 224 ~-G~IvlDv~g~~k 236 (263)
T COG1101 224 S-GKIVLDVTGEEK 236 (263)
T ss_pred C-CeEEEEcccccc
Confidence 7 999998877664
No 300
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.83 E-value=1e-20 Score=192.93 Aligned_cols=162 Identities=17% Similarity=0.203 Sum_probs=115.5
Q ss_pred EEEEeeeeeec--cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee----
Q 005138 10 TQLIDGDGTFN--VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW---- 82 (712)
Q Consensus 10 I~l~~l~k~y~--~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~---- 82 (712)
+++.++.+.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+. +.
T Consensus 1 ~~~~~~~~~~~~~~~il~~vs~~i~~Ge------~~~i~G~nGsGKSTLl~~i~G~~----~~~~G~i~~~g~~~~~~~~ 70 (218)
T cd03290 1 VQVTNGYFSWGSGLATLSNINIRIPTGQ------LTMIVGQVGCGKSSLLLAILGEM----QTLEGKVHWSNKNESEPSF 70 (218)
T ss_pred CeeeeeEEecCCCCcceeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHhccC----CCCCCeEEECCcccccccc
Confidence 36789999995 347999999999999 99999999999999999999999 899998543221 00
Q ss_pred ------eccccCC---Ccc---chhcccc------------------CCCc-------------ccccchhhHHHHHHHH
Q 005138 83 ------MARCAGI---EPC---TLIMDLE------------------GTDG-------------RERGEDDTAFEKQSAL 119 (712)
Q Consensus 83 ------~~~~~~~---~~~---~~v~d~~------------------g~~~-------------~~r~~~~~~ferQrv~ 119 (712)
....+++ .+. ..+.+.. ++.. ..........|+||++
T Consensus 71 ~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~ 150 (218)
T cd03290 71 EATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRIC 150 (218)
T ss_pred cccchhhcceEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHH
Confidence 0011111 000 0111100 1100 0011233456999999
Q ss_pred HHHHHH---HHhhhccccCCCchhhhhChhhHHHHHH--HHHHhhCCCCceEEEEecCCCCcccccccccceecCC
Q 005138 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQ--VMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ 190 (712)
Q Consensus 120 ~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e--~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G 190 (712)
||+|++ ++||+||||++||+.. ...+++ ++..+. +.|.|+|++||+++.+. .|++++++.+ |
T Consensus 151 laral~~~p~illlDEPt~~LD~~~------~~~l~~~~ll~~~~-~~~~tii~~sH~~~~~~-~~d~i~~l~~-G 217 (218)
T cd03290 151 VARALYQNTNIVFLDDPFSALDIHL------SDHLMQEGILKFLQ-DDKRTLVLVTHKLQYLP-HADWIIAMKD-G 217 (218)
T ss_pred HHHHHhhCCCEEEEeCCccccCHHH------HHHHHHHHHHHHHh-cCCCEEEEEeCChHHHh-hCCEEEEecC-C
Confidence 999999 9999999999999998 888887 444443 45899999999998875 5888887776 5
No 301
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.83 E-value=4.6e-21 Score=228.60 Aligned_cols=176 Identities=19% Similarity=0.191 Sum_probs=137.7
Q ss_pred cEEEEeeeeeecc----ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC----
Q 005138 9 STQLIDGDGTFNV----SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG---- 80 (712)
Q Consensus 9 ~I~l~~l~k~y~~----~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g---- 80 (712)
.|++.|+.++|+. .+|+++++.|+.|+ .|+|+|||||||||++++|.++. +|++|++...+.
T Consensus 350 ~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~------~valVG~SGsGKST~i~LL~Rfy----dP~~G~V~idG~di~~ 419 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRPDVKILKGVSLKIPSGQ------TVALVGPSGSGKSTLIQLLARFY----DPTSGEVLIDGEDIRN 419 (1228)
T ss_pred ceEEEEEEecCCCCCcchhhCCeEEEeCCCC------EEEEECCCCCCHHHHHHHHHHhc----CCCCceEEEcCccchh
Confidence 5999999999942 46899999999999 99999999999999999999999 999999654431
Q ss_pred ---eeeccccCC---Cccch---hcc--------------------------------ccCCCcccccchhhHHHHHHHH
Q 005138 81 ---IWMARCAGI---EPCTL---IMD--------------------------------LEGTDGRERGEDDTAFEKQSAL 119 (712)
Q Consensus 81 ---i~~~~~~~~---~~~~~---v~d--------------------------------~~g~~~~~r~~~~~~ferQrv~ 119 (712)
.|++..+|. +|..+ +.+ -..+...+++-...+.||||++
T Consensus 420 ~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIA 499 (1228)
T KOG0055|consen 420 LNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIA 499 (1228)
T ss_pred cchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHH
Confidence 233333331 11110 011 1112223334345566999999
Q ss_pred HHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEec
Q 005138 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 120 ~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g 196 (712)
|||||+ +||||||||++||+++ .+.|.+.+.+.. .|.|.|+|+|+++.+.. +|+++++++ |+|+..|
T Consensus 500 IARalv~~P~ILLLDEaTSaLD~~s------e~~Vq~ALd~~~--~grTTivVaHRLStIrn-aD~I~v~~~-G~IvE~G 569 (1228)
T KOG0055|consen 500 IARALVRNPKILLLDEATSALDAES------ERVVQEALDKAS--KGRTTIVVAHRLSTIRN-ADKIAVMEE-GKIVEQG 569 (1228)
T ss_pred HHHHHHhCCCEEEecCcccccCHHH------HHHHHHHHHHhh--cCCeEEEEeeehhhhhc-cCEEEEEEC-CEEEEec
Confidence 999999 9999999999999998 777777877764 38899999999999886 899999999 9999999
Q ss_pred CcccccCC
Q 005138 197 PKPQAHME 204 (712)
Q Consensus 197 ~~~e~~~~ 204 (712)
+.+++...
T Consensus 570 ~h~ELi~~ 577 (1228)
T KOG0055|consen 570 THDELIAL 577 (1228)
T ss_pred CHHHHHhc
Confidence 99998754
No 302
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.83 E-value=2.3e-21 Score=206.45 Aligned_cols=180 Identities=12% Similarity=0.175 Sum_probs=139.3
Q ss_pred cccEEEEeeeeeec-----cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCe
Q 005138 7 CCSTQLIDGDGTFN-----VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGI 81 (712)
Q Consensus 7 ~~~I~l~~l~k~y~-----~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi 81 (712)
++.+.+.|++..|. ..++++++|++..|| .++|+|.+|||||-..+.++|++ |..+.....+.+
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GE------tlAlVGESGSGKSvTa~sim~LL-----p~~~~~~~sg~i 72 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGE------TLALVGESGSGKSVTALSILGLL-----PSPAAAHPSGSI 72 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCC------EEEEEecCCCCccHHHHHHHHhc-----CCCcccCcccee
Confidence 45799999999994 246899999999999 99999999999999999999999 554443222223
Q ss_pred eecccc-----------------C--CCccch---------------------------------hccccCCCccccc--
Q 005138 82 WMARCA-----------------G--IEPCTL---------------------------------IMDLEGTDGRERG-- 107 (712)
Q Consensus 82 ~~~~~~-----------------~--~~~~~~---------------------------------v~d~~g~~~~~r~-- 107 (712)
.+.+.. + +...++ .++..|.+..++.
T Consensus 73 ~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~ 152 (534)
T COG4172 73 LFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLD 152 (534)
T ss_pred EEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhh
Confidence 332211 0 011111 1222233322221
Q ss_pred ---chhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccc
Q 005138 108 ---EDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENL 181 (712)
Q Consensus 108 ---~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~ 181 (712)
-..++.|||||.||+|++ ++||-||||++||-.- +.+|++++++|.++.|+.++|+|||++.+..++|
T Consensus 153 ~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtv------QaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~AD 226 (534)
T COG4172 153 AYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTV------QAQILDLLKELQAELGMAILFITHDLGIVRKFAD 226 (534)
T ss_pred hCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhh------HHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhh
Confidence 112344999999999999 9999999999999987 9999999999999999999999999999999999
Q ss_pred cccceecCCeEEEecCcccccCC
Q 005138 182 EPVLREDIQKIWDSVPKPQAHME 204 (712)
Q Consensus 182 ~~~ll~~~G~I~~~g~~~e~~~~ 204 (712)
++++|.. |+++..|+...+|.+
T Consensus 227 rV~VM~~-G~ivE~~~t~~lF~~ 248 (534)
T COG4172 227 RVYVMQH-GEIVETGTTETLFAA 248 (534)
T ss_pred hEEEEec-cEEeecCcHHHHhhC
Confidence 9999999 999999998777653
No 303
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.83 E-value=1.2e-20 Score=219.42 Aligned_cols=173 Identities=16% Similarity=0.171 Sum_probs=130.7
Q ss_pred cEEEEeeeeee-c-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeee---
Q 005138 9 STQLIDGDGTF-N-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM--- 83 (712)
Q Consensus 9 ~I~l~~l~k~y-~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~--- 83 (712)
.|++.|++..| + ..+|+++++++++|+ .++|+||||||||||+++|.|+. |++|++...+ ..+
T Consensus 349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~------~vaIvG~SGsGKSTL~~lL~g~~-----p~~G~I~i~g-~~i~~~ 416 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQ------RIALVGPSGAGKTSLLNALLGFL-----PYQGSLKING-IELREL 416 (588)
T ss_pred eEEEEeeEEeccCCCeeeeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHhcCC-----CCCcEEEECC-EecccC
Confidence 49999998655 3 457999999999999 99999999999999999999987 6789854322 110
Q ss_pred -----ccccCC-------------Cccchh------------cc----------c-cCCC--cccccchhhHHHHHHHHH
Q 005138 84 -----ARCAGI-------------EPCTLI------------MD----------L-EGTD--GRERGEDDTAFEKQSALF 120 (712)
Q Consensus 84 -----~~~~~~-------------~~~~~v------------~d----------~-~g~~--~~~r~~~~~~ferQrv~~ 120 (712)
++.+++ +|..+. .+ . .|.+ -.+++...+++||||+++
T Consensus 417 ~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRial 496 (588)
T PRK11174 417 DPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLAL 496 (588)
T ss_pred CHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHH
Confidence 011110 011000 00 0 0111 123344456779999999
Q ss_pred HHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecC
Q 005138 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (712)
Q Consensus 121 A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~ 197 (712)
|||+. ++|||||||++||+.. .+.+.+.+.++. .++|+|+|||+++.+. .+|+++++++ |++++.|+
T Consensus 497 ARAll~~~~IliLDE~TSaLD~~t------e~~i~~~l~~~~--~~~TvIiItHrl~~i~-~aD~Iivl~~-G~i~e~G~ 566 (588)
T PRK11174 497 ARALLQPCQLLLLDEPTASLDAHS------EQLVMQALNAAS--RRQTTLMVTHQLEDLA-QWDQIWVMQD-GQIVQQGD 566 (588)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHH------HHHHHHHHHHHh--CCCEEEEEecChHHHH-hCCEEEEEeC-CeEeecCC
Confidence 99999 9999999999999998 899999998875 3799999999997765 4899999988 99999999
Q ss_pred cccccC
Q 005138 198 KPQAHM 203 (712)
Q Consensus 198 ~~e~~~ 203 (712)
.++..+
T Consensus 567 ~~eL~~ 572 (588)
T PRK11174 567 YAELSQ 572 (588)
T ss_pred HHHHHh
Confidence 777654
No 304
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.83 E-value=1.8e-20 Score=220.03 Aligned_cols=176 Identities=15% Similarity=0.182 Sum_probs=132.0
Q ss_pred ccEEEEeeeeeecc-----ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC--
Q 005138 8 CSTQLIDGDGTFNV-----SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-- 80 (712)
Q Consensus 8 ~~I~l~~l~k~y~~-----~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-- 80 (712)
.+|+++|+++.|.. .++++++++++.|+ +++|+||||||||||+++|+|+. +|++|++...+.
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge------~~~l~G~nGsGKSTLl~~i~Gl~----~~~~G~i~~~g~~i 72 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGE------MVAIVGASGSGKSTLMNILGCLD----KPTSGTYRVAGQDV 72 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHhcCC----CCCCeEEEECCEEc
Confidence 47999999999942 47999999999999 99999999999999999999999 899998432211
Q ss_pred ---------------e-eeccccCCCccchhcc-------ccCCCccc--------------------ccchhhHHHHHH
Q 005138 81 ---------------I-WMARCAGIEPCTLIMD-------LEGTDGRE--------------------RGEDDTAFEKQS 117 (712)
Q Consensus 81 ---------------i-~~~~~~~~~~~~~v~d-------~~g~~~~~--------------------r~~~~~~ferQr 117 (712)
+ +........+...+.+ ..+.+..+ .....+..|+||
T Consensus 73 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qr 152 (648)
T PRK10535 73 ATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQR 152 (648)
T ss_pred CcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHH
Confidence 0 0000001111111111 11211110 011123349999
Q ss_pred HHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEE
Q 005138 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (712)
Q Consensus 118 v~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~ 194 (712)
+.+|+|++ ++||+|||+++||+.. .+.+.+++.++.++ |.|+|++||+++.+. .|++++++.+ |++..
T Consensus 153 v~LAraL~~~P~lLllDEP~~gLD~~s------~~~l~~ll~~l~~~-g~tilivsH~~~~~~-~~d~i~~l~~-G~i~~ 223 (648)
T PRK10535 153 VSIARALMNGGQVILADEPTGALDSHS------GEEVMAILHQLRDR-GHTVIIVTHDPQVAA-QAERVIEIRD-GEIVR 223 (648)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHhc-CCEEEEECCCHHHHH-hCCEEEEEEC-CEEEe
Confidence 99999999 9999999999999998 99999999998754 899999999998765 5899999988 99999
Q ss_pred ecCccccc
Q 005138 195 SVPKPQAH 202 (712)
Q Consensus 195 ~g~~~e~~ 202 (712)
.|+.++..
T Consensus 224 ~g~~~~~~ 231 (648)
T PRK10535 224 NPPAQEKV 231 (648)
T ss_pred ecCccccc
Confidence 99887654
No 305
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.83 E-value=1.1e-20 Score=223.91 Aligned_cols=173 Identities=20% Similarity=0.254 Sum_probs=132.9
Q ss_pred cEEEEeeeeeec---cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeee--
Q 005138 9 STQLIDGDGTFN---VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM-- 83 (712)
Q Consensus 9 ~I~l~~l~k~y~---~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~-- 83 (712)
.|++.|++++|+ ..+|+++++++++|+ .++|+|+||||||||+++|+|+. +|++|++...+ ..+
T Consensus 463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~------~iaIvG~sGsGKSTLlklL~gl~----~p~~G~I~idg-~~l~~ 531 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETPALDNVSLTIRPGE------KVAIIGRIGSGKSTLLKLLLGLY----QPTEGSVLLDG-VDIRQ 531 (694)
T ss_pred eEEEEEEEEEeCCCCccceeeeeEEECCCC------EEEEECCCCCCHHHHHHHHhcCC----CCCCceEEECC-EEhhh
Confidence 599999999994 247999999999999 99999999999999999999999 89999854332 111
Q ss_pred ------ccccCC-------------Cccch------------hcccc-----------CCC--cccccchhhHHHHHHHH
Q 005138 84 ------ARCAGI-------------EPCTL------------IMDLE-----------GTD--GRERGEDDTAFEKQSAL 119 (712)
Q Consensus 84 ------~~~~~~-------------~~~~~------------v~d~~-----------g~~--~~~r~~~~~~ferQrv~ 119 (712)
+..+++ +|..+ +.+.. |.+ -.+++...+.+||||++
T Consensus 532 ~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRla 611 (694)
T TIGR03375 532 IDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVA 611 (694)
T ss_pred CCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHH
Confidence 011110 00000 00000 111 11333445677999999
Q ss_pred HHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEec
Q 005138 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 120 ~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g 196 (712)
+|||+. +++||||||++||+.. .+.+.+.+.++.+ ++|+|+|||+++.+. .||+++++++ |+++..|
T Consensus 612 lARall~~p~iliLDE~Ts~LD~~t------e~~i~~~l~~~~~--~~T~iiItHrl~~~~-~~D~iivl~~-G~i~e~G 681 (694)
T TIGR03375 612 LARALLRDPPILLLDEPTSAMDNRS------EERFKDRLKRWLA--GKTLVLVTHRTSLLD-LVDRIIVMDN-GRIVADG 681 (694)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHhC--CCEEEEEecCHHHHH-hCCEEEEEeC-CEEEeeC
Confidence 999999 9999999999999998 9999999988863 799999999998764 5899999988 9999999
Q ss_pred Cccccc
Q 005138 197 PKPQAH 202 (712)
Q Consensus 197 ~~~e~~ 202 (712)
+.++.+
T Consensus 682 ~~~eLl 687 (694)
T TIGR03375 682 PKDQVL 687 (694)
T ss_pred CHHHHH
Confidence 876654
No 306
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.83 E-value=7.2e-21 Score=188.26 Aligned_cols=148 Identities=12% Similarity=0.059 Sum_probs=107.1
Q ss_pred ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee-e-ccccCCCccchhcccc
Q 005138 22 SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW-M-ARCAGIEPCTLIMDLE 99 (712)
Q Consensus 22 ~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~-~-~~~~~~~~~~~v~d~~ 99 (712)
.+++++++++..|+ +++|+||||||||||||+|.+ ++|++...+... . .....+....-+++..
T Consensus 9 ~~l~~isl~i~~G~------~~~l~G~nG~GKSTLl~~il~--------~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~ 74 (176)
T cd03238 9 HNLQNLDVSIPLNV------LVVVTGVSGSGKSTLVNEGLY--------ASGKARLISFLPKFSRNKLIFIDQLQFLIDV 74 (176)
T ss_pred eeecceEEEEcCCC------EEEEECCCCCCHHHHHHHHhh--------cCCcEEECCcccccccccEEEEhHHHHHHHc
Confidence 36899999999999 999999999999999999864 235532211100 0 0000010001122333
Q ss_pred CCCc---ccccchhhHHHHHHHHHHHHHH-----HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEec
Q 005138 100 GTDG---RERGEDDTAFEKQSALFALAVS-----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIR 171 (712)
Q Consensus 100 g~~~---~~r~~~~~~ferQrv~~A~Ala-----~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtH 171 (712)
|+.. ..........|+||+++|+|++ +++|+|||+++||+.. ...+.+.+.++.+ .|.|||+|||
T Consensus 75 ~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~------~~~l~~~l~~~~~-~g~tvIivSH 147 (176)
T cd03238 75 GLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQD------INQLLEVIKGLID-LGNTVILIEH 147 (176)
T ss_pred CCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHh-CCCEEEEEeC
Confidence 4322 2333456778999999999998 6999999999999998 9999999999875 4999999999
Q ss_pred CCCCcccccccccceecCCeE
Q 005138 172 DKTRTPLENLEPVLREDIQKI 192 (712)
Q Consensus 172 Dl~~~~~~~~~~~ll~~~G~I 192 (712)
+++.+. .|++++++.+ |+.
T Consensus 148 ~~~~~~-~~d~i~~l~~-g~~ 166 (176)
T cd03238 148 NLDVLS-SADWIIDFGP-GSG 166 (176)
T ss_pred CHHHHH-hCCEEEEECC-CCC
Confidence 998764 6899888866 544
No 307
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.83 E-value=3.2e-21 Score=208.63 Aligned_cols=149 Identities=16% Similarity=0.151 Sum_probs=109.8
Q ss_pred EEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-----------e-eeccccCCCccchhcccc-------CCCcc-
Q 005138 45 IMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-----------I-WMARCAGIEPCTLIMDLE-------GTDGR- 104 (712)
Q Consensus 45 IiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-----------i-~~~~~~~~~~~~~v~d~~-------g~~~~- 104 (712)
|+|||||||||||++|+|+. +|++|++...+. + ++.......+...+.+.. +....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~----~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~ 76 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFE----QPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAE 76 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCC----CCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHH
Confidence 68999999999999999999 899998543221 1 111111111111121111 11100
Q ss_pred -------------------cccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCC
Q 005138 105 -------------------ERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPR 162 (712)
Q Consensus 105 -------------------~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~ 162 (712)
......+..|+||++||+|++ ++|||||||++||+.. +..+.+.+.++.++.
T Consensus 77 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~------~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 77 IKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKL------RDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHHhc
Confidence 001122344999999999999 9999999999999998 999999999987766
Q ss_pred CceEEEEecCCCCcccccccccceecCCeEEEecCcccccCC
Q 005138 163 KTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHME 204 (712)
Q Consensus 163 g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~~~ 204 (712)
|+|+|+||||++++...|++++++.+ |++...|++.+++..
T Consensus 151 g~tiiivTHd~~e~~~~~d~i~vl~~-G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 151 GITFVFVTHDQEEAMTMSDRIAIMRK-GKIAQIGTPEEIYEE 191 (325)
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEEcCHHHHHhC
Confidence 89999999999999888999999998 999999988776643
No 308
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.83 E-value=8.3e-21 Score=219.28 Aligned_cols=166 Identities=13% Similarity=0.196 Sum_probs=125.5
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC--e-ee
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG--I-WM 83 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g--i-~~ 83 (712)
.+|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+. + ++
T Consensus 321 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge------~~~l~G~NGsGKSTLl~~l~G~~----~p~~G~i~~~~~~~i~~v 390 (552)
T TIGR03719 321 KVIEAENLSKGFGDKLLIDDLSFKLPPGG------IVGVIGPNGAGKSTLFRMITGQE----QPDSGTIKIGETVKLAYV 390 (552)
T ss_pred eEEEEeeEEEEECCeeeeccceEEEcCCC------EEEEECCCCCCHHHHHHHHcCCC----CCCCeEEEECCceEEEEE
Confidence 4799999999995 457999999999999 99999999999999999999998 899998654221 1 11
Q ss_pred cccc-CCCccchhc-----------------------cccCCCc---ccccchhhHHHHHHHHHHHHHH---HHhhhccc
Q 005138 84 ARCA-GIEPCTLIM-----------------------DLEGTDG---RERGEDDTAFEKQSALFALAVS---DIVLINMW 133 (712)
Q Consensus 84 ~~~~-~~~~~~~v~-----------------------d~~g~~~---~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP 133 (712)
.... ...+...+. +..|+.. .......+.+||||++||++++ ++||||||
T Consensus 391 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEP 470 (552)
T TIGR03719 391 DQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEP 470 (552)
T ss_pred eCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 1111 111111111 1112211 1112334556999999999999 99999999
Q ss_pred cCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEE
Q 005138 134 CHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (712)
Q Consensus 134 ~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~ 193 (712)
|++||+.. ...+.+.+.++. + |||+||||++.+...|++++++.+.|++.
T Consensus 471 t~~LD~~~------~~~l~~~l~~~~---~-~viivsHd~~~~~~~~d~i~~l~~~~~~~ 520 (552)
T TIGR03719 471 TNDLDVET------LRALEEALLEFA---G-CAVVISHDRWFLDRIATHILAFEGDSHVE 520 (552)
T ss_pred CCCCCHHH------HHHHHHHHHHCC---C-eEEEEeCCHHHHHHhCCEEEEEECCCeEE
Confidence 99999998 999999999872 4 89999999999988899999987645765
No 309
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.83 E-value=7.4e-21 Score=219.85 Aligned_cols=166 Identities=14% Similarity=0.213 Sum_probs=125.6
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCe---ee
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGI---WM 83 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi---~~ 83 (712)
.+|++.|+++.|+ ..+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+.. ++
T Consensus 323 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge------~~~l~G~NGsGKSTLl~~i~G~~----~p~~G~i~~~~~~~i~~v 392 (556)
T PRK11819 323 KVIEAENLSKSFGDRLLIDDLSFSLPPGG------IVGIIGPNGAGKSTLFKMITGQE----QPDSGTIKIGETVKLAYV 392 (556)
T ss_pred eEEEEEeEEEEECCeeeecceeEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCceEEEEE
Confidence 3799999999995 457999999999999 99999999999999999999999 8999986542211 11
Q ss_pred cccc-CCCccchhc-----------------------cccCCCc---ccccchhhHHHHHHHHHHHHHH---HHhhhccc
Q 005138 84 ARCA-GIEPCTLIM-----------------------DLEGTDG---RERGEDDTAFEKQSALFALAVS---DIVLINMW 133 (712)
Q Consensus 84 ~~~~-~~~~~~~v~-----------------------d~~g~~~---~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP 133 (712)
.... ...+...+. +..|+.. .......+.+|+||++||+|++ ++||||||
T Consensus 393 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 472 (556)
T PRK11819 393 DQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEP 472 (556)
T ss_pred eCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 1111 111111111 1112211 1122334566999999999999 99999999
Q ss_pred cCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEE
Q 005138 134 CHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (712)
Q Consensus 134 ~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~ 193 (712)
|++||+.. ...+.+.+.++ . | |+|+||||++.+...|++++++.+.|++.
T Consensus 473 t~~LD~~~------~~~l~~~l~~~--~-~-tvi~vtHd~~~~~~~~d~i~~l~~~g~~~ 522 (556)
T PRK11819 473 TNDLDVET------LRALEEALLEF--P-G-CAVVISHDRWFLDRIATHILAFEGDSQVE 522 (556)
T ss_pred CCCCCHHH------HHHHHHHHHhC--C-C-eEEEEECCHHHHHHhCCEEEEEECCCeEE
Confidence 99999998 99999999886 2 4 89999999999988899998887646665
No 310
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.83 E-value=1.4e-20 Score=218.45 Aligned_cols=176 Identities=16% Similarity=0.194 Sum_probs=133.8
Q ss_pred cEEEEeeeeeecc---ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-----
Q 005138 9 STQLIDGDGTFNV---SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG----- 80 (712)
Q Consensus 9 ~I~l~~l~k~y~~---~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g----- 80 (712)
.|+++|+++.|+. .+|+++++++++|+ +++|+||||||||||+++|+|+. +|++|++...+.
T Consensus 338 ~i~~~~v~f~y~~~~~~il~~i~~~i~~G~------~~aivG~sGsGKSTL~~ll~g~~----~p~~G~I~i~g~~i~~~ 407 (574)
T PRK11160 338 SLTLNNVSFTYPDQPQPVLKGLSLQIKAGE------KVALLGRTGCGKSTLLQLLTRAW----DPQQGEILLNGQPIADY 407 (574)
T ss_pred eEEEEEEEEECCCCCCcceecceEEECCCC------EEEEECCCCCCHHHHHHHHhcCC----CCCCceEEECCEEhhhC
Confidence 5999999999942 37999999999999 99999999999999999999999 899998533211
Q ss_pred --------e-eeccccCC------Cccch------------hccc----------cCCCc--ccccchhhHHHHHHHHHH
Q 005138 81 --------I-WMARCAGI------EPCTL------------IMDL----------EGTDG--RERGEDDTAFEKQSALFA 121 (712)
Q Consensus 81 --------i-~~~~~~~~------~~~~~------------v~d~----------~g~~~--~~r~~~~~~ferQrv~~A 121 (712)
+ ++.+.... +|..+ .++. .|.+. .+++...+..||||+++|
T Consensus 408 ~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialA 487 (574)
T PRK11160 408 SEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIA 487 (574)
T ss_pred CHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHH
Confidence 0 01111000 01000 0011 11111 123344567799999999
Q ss_pred HHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCc
Q 005138 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (712)
Q Consensus 122 ~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~ 198 (712)
||+. ++||+||||++||+.. .+.+.+.+.++. .++|+|+|+|+++.+.. ||+++++++ |+++..|+.
T Consensus 488 Rall~~~~ililDE~ts~lD~~t------~~~i~~~l~~~~--~~~tviiitHr~~~~~~-~d~i~~l~~-G~i~~~g~~ 557 (574)
T PRK11160 488 RALLHDAPLLLLDEPTEGLDAET------ERQILELLAEHA--QNKTVLMITHRLTGLEQ-FDRICVMDN-GQIIEQGTH 557 (574)
T ss_pred HHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHc--CCCEEEEEecChhHHHh-CCEEEEEeC-CeEEEeCCH
Confidence 9999 9999999999999998 899999999885 37999999999987764 899999988 999999998
Q ss_pred ccccCC
Q 005138 199 PQAHME 204 (712)
Q Consensus 199 ~e~~~~ 204 (712)
++..+.
T Consensus 558 ~~l~~~ 563 (574)
T PRK11160 558 QELLAQ 563 (574)
T ss_pred HHHHhc
Confidence 776543
No 311
>PLN03073 ABC transporter F family; Provisional
Probab=99.83 E-value=1.8e-20 Score=221.22 Aligned_cols=170 Identities=15% Similarity=0.133 Sum_probs=126.5
Q ss_pred ccEEEEeeeeeec-c-ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC--e-e
Q 005138 8 CSTQLIDGDGTFN-V-SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG--I-W 82 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~-~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g--i-~ 82 (712)
.+|++.|+++.|+ . .++++++|++..|+ +++|+||||||||||||+|+|+. +|++|++..... + +
T Consensus 507 ~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge------~i~LvG~NGsGKSTLLk~L~Gll----~p~~G~I~~~~~~~igy 576 (718)
T PLN03073 507 PIISFSDASFGYPGGPLLFKNLNFGIDLDS------RIAMVGPNGIGKSTILKLISGEL----QPSSGTVFRSAKVRMAV 576 (718)
T ss_pred ceEEEEeeEEEeCCCCeeEeccEEEEcCCC------EEEEECCCCCcHHHHHHHHhCCC----CCCCceEEECCceeEEE
Confidence 4799999999994 3 37999999999999 99999999999999999999999 899998643221 1 1
Q ss_pred ecccc--CC---Cccch----------------hccccCCCc---ccccchhhHHHHHHHHHHHHHH---HHhhhccccC
Q 005138 83 MARCA--GI---EPCTL----------------IMDLEGTDG---RERGEDDTAFEKQSALFALAVS---DIVLINMWCH 135 (712)
Q Consensus 83 ~~~~~--~~---~~~~~----------------v~d~~g~~~---~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~ 135 (712)
+.... .. .+... +++..|+.. .......+.+||||++||++++ ++|||||||+
T Consensus 577 v~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~ 656 (718)
T PLN03073 577 FSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSN 656 (718)
T ss_pred EeccccccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 11110 00 00000 011112221 1122344567999999999999 9999999999
Q ss_pred CCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEE-EecCc
Q 005138 136 DIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW-DSVPK 198 (712)
Q Consensus 136 ~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~-~~g~~ 198 (712)
+||+.. ...+.+.+.+. .| |||+||||+..+...|++++++.+ |+++ ..|+.
T Consensus 657 ~LD~~s------~~~l~~~L~~~---~g-tvIivSHd~~~i~~~~drv~~l~~-G~i~~~~g~~ 709 (718)
T PLN03073 657 HLDLDA------VEALIQGLVLF---QG-GVLMVSHDEHLISGSVDELWVVSE-GKVTPFHGTF 709 (718)
T ss_pred CCCHHH------HHHHHHHHHHc---CC-EEEEEECCHHHHHHhCCEEEEEEC-CEEEEeCCCH
Confidence 999998 77777777664 24 999999999999888999999988 9987 45543
No 312
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.83 E-value=2.5e-20 Score=214.97 Aligned_cols=174 Identities=15% Similarity=0.147 Sum_probs=130.7
Q ss_pred cEEEEeeeeeec---cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-----
Q 005138 9 STQLIDGDGTFN---VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG----- 80 (712)
Q Consensus 9 ~I~l~~l~k~y~---~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g----- 80 (712)
.+++.|+++.|+ ..+++++++++++|+ .++|+||||||||||+++|+|+. +|++|++...+.
T Consensus 316 ~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~------~~~ivG~sGsGKSTL~~ll~g~~----~~~~G~i~~~g~~i~~~ 385 (544)
T TIGR01842 316 HLSVENVTIVPPGGKKPTLRGISFRLQAGE------ALAIIGPSGSGKSTLARLIVGIW----PPTSGSVRLDGADLKQW 385 (544)
T ss_pred eEEEEEEEEEcCCCCccccccceEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEehhhC
Confidence 599999999994 247999999999999 99999999999999999999999 899998533210
Q ss_pred --------e-eeccccCC------Cccchh------------cccc-----------CCC--cccccchhhHHHHHHHHH
Q 005138 81 --------I-WMARCAGI------EPCTLI------------MDLE-----------GTD--GRERGEDDTAFEKQSALF 120 (712)
Q Consensus 81 --------i-~~~~~~~~------~~~~~v------------~d~~-----------g~~--~~~r~~~~~~ferQrv~~ 120 (712)
+ +..+.... +|..+. .+.. |.+ -.+.+...+..||||+++
T Consensus 386 ~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~l 465 (544)
T TIGR01842 386 DRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIAL 465 (544)
T ss_pred CHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHH
Confidence 0 01111000 000000 0000 111 112233445679999999
Q ss_pred HHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecC
Q 005138 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (712)
Q Consensus 121 A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~ 197 (712)
|||+. +++|+||||++||+.. .+.+.+.+.++..+ ++|+|++||+++.. ..||+++++++ |+++..|+
T Consensus 466 ARall~~~~ililDEpts~LD~~~------~~~i~~~l~~~~~~-~~tvi~ith~~~~~-~~~d~i~~l~~-G~i~~~g~ 536 (544)
T TIGR01842 466 ARALYGDPKLVVLDEPNSNLDEEG------EQALANAIKALKAR-GITVVVITHRPSLL-GCVDKILVLQD-GRIARFGE 536 (544)
T ss_pred HHHHhcCCCEEEEeCCccccCHHH------HHHHHHHHHHHhhC-CCEEEEEeCCHHHH-HhCCEEEEEEC-CEEEeeCC
Confidence 99999 9999999999999998 99999999988643 79999999999864 46899999988 99999998
Q ss_pred cccc
Q 005138 198 KPQA 201 (712)
Q Consensus 198 ~~e~ 201 (712)
.++.
T Consensus 537 ~~~l 540 (544)
T TIGR01842 537 RDEV 540 (544)
T ss_pred HHHH
Confidence 6554
No 313
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.83 E-value=1.5e-20 Score=217.81 Aligned_cols=175 Identities=19% Similarity=0.254 Sum_probs=136.8
Q ss_pred cEEEEeeeeeec--cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeec--
Q 005138 9 STQLIDGDGTFN--VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMA-- 84 (712)
Q Consensus 9 ~I~l~~l~k~y~--~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~-- 84 (712)
.|++.|++..|+ ..+++++++++++|+ .+||+||+|||||||+|.|+|+. +|++|++.. .|..+.
T Consensus 328 ~I~f~~vsf~y~~~~~vl~~is~~i~~Ge------~vaiVG~sGsGKSTl~~LL~r~~----~~~~G~I~i-dg~dI~~i 396 (567)
T COG1132 328 SIEFENVSFSYPGKKPVLKDISFSIEPGE------KVAIVGPSGSGKSTLIKLLLRLY----DPTSGEILI-DGIDIRDI 396 (567)
T ss_pred eEEEEEEEEEcCCCCccccCceEEEcCCC------EEEEECCCCCCHHHHHHHHhccC----CCCCCeEEE-CCEehhhc
Confidence 489999999996 357999999999999 99999999999999999999999 999999654 222111
Q ss_pred ------cccCC-------------Ccc----------------------chhcccc-CCC--cccccchhhHHHHHHHHH
Q 005138 85 ------RCAGI-------------EPC----------------------TLIMDLE-GTD--GRERGEDDTAFEKQSALF 120 (712)
Q Consensus 85 ------~~~~~-------------~~~----------------------~~v~d~~-g~~--~~~r~~~~~~ferQrv~~ 120 (712)
..+++ +|. .++.... |.+ -.+++...+.+||||+++
T Consensus 397 ~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlai 476 (567)
T COG1132 397 SLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAI 476 (567)
T ss_pred CHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHH
Confidence 11110 000 0111111 222 123445566779999999
Q ss_pred HHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecC
Q 005138 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (712)
Q Consensus 121 A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~ 197 (712)
|||+. ++|||||||++||+.+ .+.+.+.+.++.+ ++|+|+|+|.++.+.. ||+++++++ |++++.|+
T Consensus 477 ARall~~~~ILILDEaTSalD~~t------E~~I~~~l~~l~~--~rT~iiIaHRlsti~~-aD~IiVl~~-G~i~e~G~ 546 (567)
T COG1132 477 ARALLRNPPILILDEATSALDTET------EALIQDALKKLLK--GRTTLIIAHRLSTIKN-ADRIIVLDN-GRIVERGT 546 (567)
T ss_pred HHHHhcCCCEEEEeccccccCHHh------HHHHHHHHHHHhc--CCEEEEEeccHhHHHh-CCEEEEEEC-CEEEEecC
Confidence 99999 9999999999999998 8899999988763 5688889999987776 999999999 99999999
Q ss_pred cccccCC
Q 005138 198 KPQAHME 204 (712)
Q Consensus 198 ~~e~~~~ 204 (712)
+++.+..
T Consensus 547 h~eLl~~ 553 (567)
T COG1132 547 HEELLAK 553 (567)
T ss_pred HHHHHHc
Confidence 9887754
No 314
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.82 E-value=1.6e-20 Score=220.26 Aligned_cols=167 Identities=18% Similarity=0.223 Sum_probs=124.7
Q ss_pred ccEEEEeeeeeecc-ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC--e-ee
Q 005138 8 CSTQLIDGDGTFNV-SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG--I-WM 83 (712)
Q Consensus 8 ~~I~l~~l~k~y~~-~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g--i-~~ 83 (712)
.+|++.|+++.|+. .++++++++|..|+ +++|+|||||||||||++|+|+. +|++|++..... + ++
T Consensus 318 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge------~~~l~G~NGsGKSTLlk~l~G~~----~p~~G~i~~~~~~~i~y~ 387 (635)
T PRK11147 318 IVFEMENVNYQIDGKQLVKDFSAQVQRGD------KIALIGPNGCGKTTLLKLMLGQL----QADSGRIHCGTKLEVAYF 387 (635)
T ss_pred ceEEEeeeEEEECCeEEEcCcEEEEcCCC------EEEEECCCCCcHHHHHHHHhCCC----CCCCcEEEECCCcEEEEE
Confidence 36999999999953 47999999999999 99999999999999999999998 899998654221 1 22
Q ss_pred cccc-CCCccchhcccc-----------------------CCCc---ccccchhhHHHHHHHHHHHHHH---HHhhhccc
Q 005138 84 ARCA-GIEPCTLIMDLE-----------------------GTDG---RERGEDDTAFEKQSALFALAVS---DIVLINMW 133 (712)
Q Consensus 84 ~~~~-~~~~~~~v~d~~-----------------------g~~~---~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP 133 (712)
.... ...+...+.+.. |+.. .......+.+||||++||++++ ++||||||
T Consensus 388 ~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEP 467 (635)
T PRK11147 388 DQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEP 467 (635)
T ss_pred eCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 2111 111111111110 1110 0111233455999999999999 99999999
Q ss_pred cCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEE
Q 005138 134 CHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (712)
Q Consensus 134 ~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~ 194 (712)
|++||+.. ...+.+.+.++ +.|||+||||.+++...|++++++.+.|++..
T Consensus 468 t~~LD~~~------~~~l~~~l~~~----~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~ 518 (635)
T PRK11147 468 TNDLDVET------LELLEELLDSY----QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGR 518 (635)
T ss_pred CCCCCHHH------HHHHHHHHHhC----CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEE
Confidence 99999998 88888888775 35999999999999888999999873388764
No 315
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.82 E-value=2.3e-20 Score=221.67 Aligned_cols=173 Identities=17% Similarity=0.212 Sum_probs=132.2
Q ss_pred cEEEEeeeeeec--cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeee---
Q 005138 9 STQLIDGDGTFN--VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM--- 83 (712)
Q Consensus 9 ~I~l~~l~k~y~--~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~--- 83 (712)
.|++.|+++.|+ ..+|+++++++++|+ .++|+||||||||||+++|+|+. +|++|++...+ ..+
T Consensus 473 ~I~~~~vsf~y~~~~~iL~~isl~i~~G~------~vaIvG~SGsGKSTLlklL~gl~----~p~~G~I~idg-~~i~~~ 541 (708)
T TIGR01193 473 DIVINDVSYSYGYGSNILSDISLTIKMNS------KTTIVGMSGSGKSTLAKLLVGFF----QARSGEILLNG-FSLKDI 541 (708)
T ss_pred cEEEEEEEEEcCCCCcceeceeEEECCCC------EEEEECCCCCCHHHHHHHHhccC----CCCCcEEEECC-EEHHHc
Confidence 599999999994 357999999999999 99999999999999999999999 89999854322 110
Q ss_pred -----ccccCC-------------Cccchh-------------cccc-----------CCCc--ccccchhhHHHHHHHH
Q 005138 84 -----ARCAGI-------------EPCTLI-------------MDLE-----------GTDG--RERGEDDTAFEKQSAL 119 (712)
Q Consensus 84 -----~~~~~~-------------~~~~~v-------------~d~~-----------g~~~--~~r~~~~~~ferQrv~ 119 (712)
+..+++ +|..+. .+.. |.+. .+.+...+.+||||++
T Consensus 542 ~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRia 621 (708)
T TIGR01193 542 DRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIA 621 (708)
T ss_pred CHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHH
Confidence 111110 011100 0000 1111 1233345667999999
Q ss_pred HHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEec
Q 005138 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 120 ~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g 196 (712)
+|||+. ++|||||||++||+.. .+.+.+.+.++ .++|+|+|||+++.+. .||+++++++ |+++..|
T Consensus 622 lARall~~p~iliLDE~Ts~LD~~t------e~~i~~~L~~~---~~~T~IiitHr~~~~~-~~D~i~~l~~-G~i~~~G 690 (708)
T TIGR01193 622 LARALLTDSKVLILDESTSNLDTIT------EKKIVNNLLNL---QDKTIIFVAHRLSVAK-QSDKIIVLDH-GKIIEQG 690 (708)
T ss_pred HHHHHhhCCCEEEEeCccccCCHHH------HHHHHHHHHHh---cCCEEEEEecchHHHH-cCCEEEEEEC-CEEEEEC
Confidence 999999 9999999999999998 88899998875 3789999999998764 5899999988 9999999
Q ss_pred CcccccC
Q 005138 197 PKPQAHM 203 (712)
Q Consensus 197 ~~~e~~~ 203 (712)
+.++..+
T Consensus 691 ~~~~L~~ 697 (708)
T TIGR01193 691 SHDELLD 697 (708)
T ss_pred CHHHHHh
Confidence 9877654
No 316
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.82 E-value=2.1e-20 Score=179.48 Aligned_cols=180 Identities=15% Similarity=0.119 Sum_probs=134.9
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeec--cCCeeec
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT--TKGIWMA 84 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~--t~gi~~~ 84 (712)
+.+++.+++|.|+ .....+++|++-+|+ +.+|+|.+||||||||+||.|-. .|++|++.. ..|-+..
T Consensus 5 PLL~V~~lsk~Yg~~~gc~~vsF~l~PGe------VLgiVGESGSGKtTLL~~is~rl----~p~~G~v~Y~~r~~~~~d 74 (258)
T COG4107 5 PLLSVSGLSKLYGPGKGCRDVSFDLYPGE------VLGIVGESGSGKTTLLKCISGRL----TPDAGTVTYRMRDGQPRD 74 (258)
T ss_pred cceeehhhhhhhCCCcCccccceeecCCc------EEEEEecCCCcHHhHHHHHhccc----CCCCCeEEEEcCCCCchh
Confidence 4799999999995 456899999999999 99999999999999999999998 899998321 1111100
Q ss_pred cc-c-------------CC--Cc--cchhcccc-CC-------------Cccc----------------c----cchhhH
Q 005138 85 RC-A-------------GI--EP--CTLIMDLE-GT-------------DGRE----------------R----GEDDTA 112 (712)
Q Consensus 85 ~~-~-------------~~--~~--~~~v~d~~-g~-------------~~~~----------------r----~~~~~~ 112 (712)
-. . |+ .+ ..+-+++. |- .+.. | ...-+.
T Consensus 75 l~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSG 154 (258)
T COG4107 75 LYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSG 154 (258)
T ss_pred HhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccch
Confidence 00 0 00 00 00000000 00 0000 0 001123
Q ss_pred HHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecC
Q 005138 113 FEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDI 189 (712)
Q Consensus 113 ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~ 189 (712)
.|+||+.||+-+. .++++||||.|||-.- +..++++++.+..+.+..+++||||+..+..++++..+|.+
T Consensus 155 GMqQRLQiARnLVt~PrLvfMDEPTGGLDVSV------QARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~- 227 (258)
T COG4107 155 GMQQRLQIARNLVTRPRLVFMDEPTGGLDVSV------QARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQ- 227 (258)
T ss_pred HHHHHHHHHHHhccCCceEEecCCCCCcchhh------HHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecC-
Confidence 4999999999999 9999999999999877 88999999999988899999999999999999999999999
Q ss_pred CeEEEecCcccccCC
Q 005138 190 QKIWDSVPKPQAHME 204 (712)
Q Consensus 190 G~I~~~g~~~e~~~~ 204 (712)
|+++..|-.+.++.+
T Consensus 228 g~vve~GLTDrvLDD 242 (258)
T COG4107 228 GQVVESGLTDRVLDD 242 (258)
T ss_pred CCEeccccccccccC
Confidence 999999987777654
No 317
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.82 E-value=2.6e-20 Score=216.66 Aligned_cols=174 Identities=21% Similarity=0.248 Sum_probs=131.1
Q ss_pred cEEEEeeeeeec--cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC------
Q 005138 9 STQLIDGDGTFN--VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------ 80 (712)
Q Consensus 9 ~I~l~~l~k~y~--~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g------ 80 (712)
.|++.|+++.|+ ..+++++++++++|+ +++|+|+||||||||+|+|+|+. +|++|.+...+.
T Consensus 334 ~I~~~~vsf~y~~~~~iL~~inl~i~~G~------~v~IvG~sGsGKSTLl~lL~gl~----~p~~G~I~i~g~~i~~~~ 403 (588)
T PRK13657 334 AVEFDDVSFSYDNSRQGVEDVSFEAKPGQ------TVAIVGPTGAGKSTLINLLQRVF----DPQSGRILIDGTDIRTVT 403 (588)
T ss_pred eEEEEEEEEEeCCCCceecceeEEECCCC------EEEEECCCCCCHHHHHHHHhcCc----CCCCCEEEECCEEhhhCC
Confidence 599999999994 347999999999999 99999999999999999999999 899998533221
Q ss_pred -------e-eeccccCC------Cccchh------------ccc-----------cCCCc--ccccchhhHHHHHHHHHH
Q 005138 81 -------I-WMARCAGI------EPCTLI------------MDL-----------EGTDG--RERGEDDTAFEKQSALFA 121 (712)
Q Consensus 81 -------i-~~~~~~~~------~~~~~v------------~d~-----------~g~~~--~~r~~~~~~ferQrv~~A 121 (712)
+ ++.+.... +|..+. ++. .|.+. .+.+...+.+||||+++|
T Consensus 404 ~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialA 483 (588)
T PRK13657 404 RASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIA 483 (588)
T ss_pred HHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHH
Confidence 0 11111000 010000 000 01111 122233466799999999
Q ss_pred HHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCc
Q 005138 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (712)
Q Consensus 122 ~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~ 198 (712)
||+. +++|+||||++||+.. .+.+++.+.++. .++|+|+|||+++.+. .+|+++++++ |++...|+.
T Consensus 484 Rall~~~~iliLDEpts~LD~~t------~~~i~~~l~~~~--~~~tvIiitHr~~~~~-~~D~ii~l~~-G~i~~~g~~ 553 (588)
T PRK13657 484 RALLKDPPILILDEATSALDVET------EAKVKAALDELM--KGRTTFIIAHRLSTVR-NADRILVFDN-GRVVESGSF 553 (588)
T ss_pred HHHhcCCCEEEEeCCccCCCHHH------HHHHHHHHHHHh--cCCEEEEEEecHHHHH-hCCEEEEEEC-CEEEEeCCH
Confidence 9999 9999999999999998 889999998874 3799999999997765 5899999988 999999987
Q ss_pred cccc
Q 005138 199 PQAH 202 (712)
Q Consensus 199 ~e~~ 202 (712)
.+..
T Consensus 554 ~~l~ 557 (588)
T PRK13657 554 DELV 557 (588)
T ss_pred HHHH
Confidence 6654
No 318
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.82 E-value=7.2e-21 Score=199.10 Aligned_cols=162 Identities=14% Similarity=0.067 Sum_probs=115.7
Q ss_pred eeeeeecc--ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeee----------ccCCe
Q 005138 14 DGDGTFNV--SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ----------TTKGI 81 (712)
Q Consensus 14 ~l~k~y~~--~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~----------~t~gi 81 (712)
+++++|+. .++++++ .+..|+ +++|+||||||||||||+|+|+. +|++|++. .-.|.
T Consensus 5 ~~~~~y~~~~~~l~~i~-~i~~Ge------~~~IvG~nGsGKSTLlk~l~Gl~----~p~~G~I~~~~~~~~~~~~~~g~ 73 (255)
T cd03236 5 EPVHRYGPNSFKLHRLP-VPREGQ------VLGLVGPNGIGKSTALKILAGKL----KPNLGKFDDPPDWDEILDEFRGS 73 (255)
T ss_pred CcceeecCcchhhhcCC-CCCCCC------EEEEECCCCCCHHHHHHHHhCCc----CCCCceEeeccccchhhhhccCc
Confidence 57888853 3688998 488888 99999999999999999999999 89999863 01121
Q ss_pred eec--------cc--cCC-------Cccch---h----------------ccccCCCc--ccccchhhHHHHHHHHHHHH
Q 005138 82 WMA--------RC--AGI-------EPCTL---I----------------MDLEGTDG--RERGEDDTAFEKQSALFALA 123 (712)
Q Consensus 82 ~~~--------~~--~~~-------~~~~~---v----------------~d~~g~~~--~~r~~~~~~ferQrv~~A~A 123 (712)
... .. +++ .+..+ + ++..|+.. ..........|+||+.+|++
T Consensus 74 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lara 153 (255)
T cd03236 74 ELQNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAA 153 (255)
T ss_pred hhhhhhHHhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 100 00 000 00000 0 00111111 01112234459999999999
Q ss_pred HH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEe
Q 005138 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (712)
Q Consensus 124 la---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~ 195 (712)
++ +++|+||||++||+.. ...+.+.+.++.++ +.|+|++|||++.+...|++++++ + |++.+.
T Consensus 154 l~~~p~illlDEPts~LD~~~------~~~l~~~l~~l~~~-~~tIIiiSHd~~~~~~~ad~i~~l-~-~~~~~~ 219 (255)
T cd03236 154 LARDADFYFFDEPSSYLDIKQ------RLNAARLIRELAED-DNYVLVVEHDLAVLDYLSDYIHCL-Y-GEPGAY 219 (255)
T ss_pred HHhCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEE-C-CCCCcc
Confidence 99 9999999999999998 99999999998764 899999999999888788888777 4 566543
No 319
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.82 E-value=2.9e-20 Score=216.18 Aligned_cols=175 Identities=21% Similarity=0.208 Sum_probs=131.7
Q ss_pred cEEEEeeeeeec--cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC------
Q 005138 9 STQLIDGDGTFN--VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------ 80 (712)
Q Consensus 9 ~I~l~~l~k~y~--~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g------ 80 (712)
.|++.|+++.|+ ..++++++++++.|+ +++|+||||||||||+++|+|+. +|++|++...+.
T Consensus 334 ~i~~~~v~~~y~~~~~~l~~i~~~i~~G~------~~~ivG~sGsGKSTL~~ll~g~~----~~~~G~i~~~g~~~~~~~ 403 (585)
T TIGR01192 334 AVEFRHITFEFANSSQGVFDVSFEAKAGQ------TVAIVGPTGAGKTTLINLLQRVY----DPTVGQILIDGIDINTVT 403 (585)
T ss_pred eEEEEEEEEECCCCCccccceeEEEcCCC------EEEEECCCCCCHHHHHHHHccCC----CCCCCEEEECCEEhhhCC
Confidence 499999999995 347999999999999 99999999999999999999999 899998532210
Q ss_pred -------e-eeccccCC------Cccch----------------------hccc-cCCC--cccccchhhHHHHHHHHHH
Q 005138 81 -------I-WMARCAGI------EPCTL----------------------IMDL-EGTD--GRERGEDDTAFEKQSALFA 121 (712)
Q Consensus 81 -------i-~~~~~~~~------~~~~~----------------------v~d~-~g~~--~~~r~~~~~~ferQrv~~A 121 (712)
+ ++.+.... ++..+ +... .|.+ -.+.+...+.+||||+++|
T Consensus 404 ~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lA 483 (585)
T TIGR01192 404 RESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIA 483 (585)
T ss_pred HHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHH
Confidence 0 01111000 00000 0000 0111 1122333466799999999
Q ss_pred HHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCc
Q 005138 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (712)
Q Consensus 122 ~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~ 198 (712)
||+. ++||+||||++||+.. .+.+.+.+.++. .+.|+|+|||+++.+. .||+++++++ |++...|+.
T Consensus 484 Rall~~p~ililDEpts~LD~~~------~~~i~~~l~~~~--~~~tvI~isH~~~~~~-~~d~i~~l~~-G~i~~~g~~ 553 (585)
T TIGR01192 484 RAILKNAPILVLDEATSALDVET------EARVKNAIDALR--KNRTTFIIAHRLSTVR-NADLVLFLDQ-GRLIEKGSF 553 (585)
T ss_pred HHHhcCCCEEEEECCccCCCHHH------HHHHHHHHHHHh--CCCEEEEEEcChHHHH-cCCEEEEEEC-CEEEEECCH
Confidence 9999 9999999999999998 899999998874 3899999999998875 4999999988 999999987
Q ss_pred ccccC
Q 005138 199 PQAHM 203 (712)
Q Consensus 199 ~e~~~ 203 (712)
++..+
T Consensus 554 ~~l~~ 558 (585)
T TIGR01192 554 QELIQ 558 (585)
T ss_pred HHHHH
Confidence 66543
No 320
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.82 E-value=2.1e-20 Score=221.86 Aligned_cols=173 Identities=14% Similarity=0.157 Sum_probs=128.7
Q ss_pred cEEEEeeeeeecc----ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeee-
Q 005138 9 STQLIDGDGTFNV----SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM- 83 (712)
Q Consensus 9 ~I~l~~l~k~y~~----~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~- 83 (712)
.|+++|+++.|+. .+|+++++++++|+ +++|+||||||||||+|+|.|+. +|++|++...+ ..+
T Consensus 478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge------~vaIvG~SGsGKSTLl~lL~gl~----~p~~G~I~idg-~~i~ 546 (711)
T TIGR00958 478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGE------VVALVGPSGSGKSTVAALLQNLY----QPTGGQVLLDG-VPLV 546 (711)
T ss_pred eEEEEEEEEECCCCCCCccccCceEEEcCCC------EEEEECCCCCCHHHHHHHHHhcc----CCCCCEEEECC-EEHH
Confidence 5999999999942 47999999999999 99999999999999999999999 89999854322 110
Q ss_pred -------ccccCC-------------Cccchh------------cc----------c-cCCC--cccccchhhHHHHHHH
Q 005138 84 -------ARCAGI-------------EPCTLI------------MD----------L-EGTD--GRERGEDDTAFEKQSA 118 (712)
Q Consensus 84 -------~~~~~~-------------~~~~~v------------~d----------~-~g~~--~~~r~~~~~~ferQrv 118 (712)
+..+++ +|..+. .+ . .|.+ -.+.+...+.+||||+
T Consensus 547 ~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRl 626 (711)
T TIGR00958 547 QYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRI 626 (711)
T ss_pred hcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHH
Confidence 011110 011000 00 0 0111 1123334567799999
Q ss_pred HHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEe
Q 005138 119 LFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (712)
Q Consensus 119 ~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~ 195 (712)
++|||+. +++||||||++||+.. .+.+.+ ... ..++|+|+|||+++.+. .+|+++++++ |+|+..
T Consensus 627 alARALl~~p~ILILDEpTSaLD~~t------e~~i~~-~~~---~~~~TvIiItHrl~~i~-~aD~IivL~~-G~ive~ 694 (711)
T TIGR00958 627 AIARALVRKPRVLILDEATSALDAEC------EQLLQE-SRS---RASRTVLLIAHRLSTVE-RADQILVLKK-GSVVEM 694 (711)
T ss_pred HHHHHHhcCCCEEEEEccccccCHHH------HHHHHH-hhc---cCCCeEEEEeccHHHHH-hCCEEEEEEC-CEEEEe
Confidence 9999999 9999999999999987 777776 222 24789999999998765 4899999988 999999
Q ss_pred cCcccccCC
Q 005138 196 VPKPQAHME 204 (712)
Q Consensus 196 g~~~e~~~~ 204 (712)
|+.++..+.
T Consensus 695 Gt~~eL~~~ 703 (711)
T TIGR00958 695 GTHKQLMED 703 (711)
T ss_pred eCHHHHHhC
Confidence 998776543
No 321
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.82 E-value=2.7e-20 Score=215.60 Aligned_cols=175 Identities=15% Similarity=0.160 Sum_probs=132.1
Q ss_pred cEEEEeeeeeec---cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-----
Q 005138 9 STQLIDGDGTFN---VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG----- 80 (712)
Q Consensus 9 ~I~l~~l~k~y~---~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g----- 80 (712)
.|++.|++.+|. ..++++++++++.|+ .++|+|+||||||||+++|+|+. +|++|++...+.
T Consensus 330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~------~v~IvG~sGsGKSTLl~lL~gl~----~~~~G~I~i~g~~i~~~ 399 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDRPALDSISLVIEPGE------TVALVGRSGSGKSTLVNLIPRFY----EPDSGQILLDGHDLADY 399 (571)
T ss_pred eEEEEEEEEEcCCCCCccccCeeEEecCCC------EEEEECCCCCCHHHHHHHHHhcc----CCCCCeEEECCEeHHhc
Confidence 499999999994 236999999999999 99999999999999999999999 899998543220
Q ss_pred ---------eeeccccCC------Cccch-------------hcccc-----------CCCc--ccccchhhHHHHHHHH
Q 005138 81 ---------IWMARCAGI------EPCTL-------------IMDLE-----------GTDG--RERGEDDTAFEKQSAL 119 (712)
Q Consensus 81 ---------i~~~~~~~~------~~~~~-------------v~d~~-----------g~~~--~~r~~~~~~ferQrv~ 119 (712)
.++.+.... +|..+ +++.. |++. .+.+...+.+||||++
T Consensus 400 ~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRia 479 (571)
T TIGR02203 400 TLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLA 479 (571)
T ss_pred CHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHH
Confidence 011111000 00000 00000 1111 1223335677999999
Q ss_pred HHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEec
Q 005138 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 120 ~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g 196 (712)
||||+. +++||||||++||+.. .+.+++.+.++.+ ++|+|+|||+..... .||+++.+++ |++...|
T Consensus 480 LARall~~~~illLDEpts~LD~~~------~~~i~~~L~~~~~--~~tiIiitH~~~~~~-~~D~ii~l~~-g~i~~~g 549 (571)
T TIGR02203 480 IARALLKDAPILILDEATSALDNES------ERLVQAALERLMQ--GRTTLVIAHRLSTIE-KADRIVVMDD-GRIVERG 549 (571)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHH------HHHHHHHHHHHhC--CCEEEEEehhhHHHH-hCCEEEEEeC-CEEEeeC
Confidence 999999 9999999999999998 8999999998753 789999999997754 4999999988 9999999
Q ss_pred CcccccC
Q 005138 197 PKPQAHM 203 (712)
Q Consensus 197 ~~~e~~~ 203 (712)
+.++.++
T Consensus 550 ~~~~l~~ 556 (571)
T TIGR02203 550 THNELLA 556 (571)
T ss_pred CHHHHHH
Confidence 8777653
No 322
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.82 E-value=2.6e-20 Score=211.60 Aligned_cols=167 Identities=16% Similarity=0.170 Sum_probs=127.6
Q ss_pred cccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeee--
Q 005138 7 CCSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM-- 83 (712)
Q Consensus 7 ~~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~-- 83 (712)
|.+|++.++++.|+ ...++++++++..|+ .+||||+||||||||||+|+|.. .|++|++...++..+
T Consensus 1 m~~i~~~~ls~~~g~~~l~~~~~l~~~~G~------riGLvG~NGaGKSTLLkilaG~~----~~~~G~i~~~~~~~v~~ 70 (530)
T COG0488 1 MSMITLENLSLAYGDRPLLENVSLTLNPGE------RIGLVGRNGAGKSTLLKILAGEL----EPDSGEVTRPKGLRVGY 70 (530)
T ss_pred CceEEEeeeEEeeCCceeecCCcceeCCCC------EEEEECCCCCCHHHHHHHHcCCC----cCCCCeEeecCCceEEE
Confidence 35799999999995 456899999999999 99999999999999999999999 899999777665322
Q ss_pred -ccccCCCccchhcc-------------------------------------------------------ccCCCcc-cc
Q 005138 84 -ARCAGIEPCTLIMD-------------------------------------------------------LEGTDGR-ER 106 (712)
Q Consensus 84 -~~~~~~~~~~~v~d-------------------------------------------------------~~g~~~~-~r 106 (712)
.+.........+.| -.|.+.. ..
T Consensus 71 l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~ 150 (530)
T COG0488 71 LSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRP 150 (530)
T ss_pred eCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCc
Confidence 22211111101100 1122221 11
Q ss_pred cchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccc
Q 005138 107 GEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEP 183 (712)
Q Consensus 107 ~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~ 183 (712)
....+..||.|+++|++|. |+|||||||+.||..+ ...+-+.+.+. .| |+|+||||-.+....|.++
T Consensus 151 ~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~------i~WLe~~L~~~---~g-tviiVSHDR~FLd~V~t~I 220 (530)
T COG0488 151 VSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLES------IEWLEDYLKRY---PG-TVIVVSHDRYFLDNVATHI 220 (530)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHH------HHHHHHHHHhC---CC-cEEEEeCCHHHHHHHhhhe
Confidence 2334566999999999999 9999999999999998 77777777654 36 9999999999999999998
Q ss_pred cceecCCeEEE
Q 005138 184 VLREDIQKIWD 194 (712)
Q Consensus 184 ~ll~~~G~I~~ 194 (712)
+-+.. |++..
T Consensus 221 ~~ld~-g~l~~ 230 (530)
T COG0488 221 LELDR-GKLTP 230 (530)
T ss_pred EEecC-CceeE
Confidence 88888 87654
No 323
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.82 E-value=3.2e-20 Score=215.21 Aligned_cols=174 Identities=18% Similarity=0.203 Sum_probs=131.2
Q ss_pred cEEEEeeeeeecc----ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC-----
Q 005138 9 STQLIDGDGTFNV----SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK----- 79 (712)
Q Consensus 9 ~I~l~~l~k~y~~----~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~----- 79 (712)
.|+++|++..|+. .+++++++++++|+ .++|+|+||||||||+++|+|+. +|++|++...+
T Consensus 337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge------~i~IvG~sGsGKSTLlklL~gl~----~p~~G~I~i~g~~i~~ 406 (576)
T TIGR02204 337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGE------TVALVGPSGAGKSTLFQLLLRFY----DPQSGRILLDGVDLRQ 406 (576)
T ss_pred eEEEEEEEEECCCCCCCccccceeEEecCCC------EEEEECCCCCCHHHHHHHHHhcc----CCCCCEEEECCEEHHh
Confidence 5999999999942 37999999999999 99999999999999999999999 89999853322
Q ss_pred --------C-eeeccccCC------Cccch------------hcccc-----------CCCc--ccccchhhHHHHHHHH
Q 005138 80 --------G-IWMARCAGI------EPCTL------------IMDLE-----------GTDG--RERGEDDTAFEKQSAL 119 (712)
Q Consensus 80 --------g-i~~~~~~~~------~~~~~------------v~d~~-----------g~~~--~~r~~~~~~ferQrv~ 119 (712)
. .+..+.... +|..+ +++.. |.+. .+.+...+.+||||++
T Consensus 407 ~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~ 486 (576)
T TIGR02204 407 LDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIA 486 (576)
T ss_pred cCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHH
Confidence 0 001111000 01000 00000 1111 1223334667999999
Q ss_pred HHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEec
Q 005138 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 120 ~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g 196 (712)
+|||+. +++|+||||++||+.. .+.+++.++++.+ ++|+|+|||+++... .+|+++.+.+ |+++..|
T Consensus 487 laRal~~~~~ililDEpts~lD~~~------~~~i~~~l~~~~~--~~t~IiitH~~~~~~-~~d~vi~l~~-g~~~~~g 556 (576)
T TIGR02204 487 IARAILKDAPILLLDEATSALDAES------EQLVQQALETLMK--GRTTLIIAHRLATVL-KADRIVVMDQ-GRIVAQG 556 (576)
T ss_pred HHHHHHhCCCeEEEeCcccccCHHH------HHHHHHHHHHHhC--CCEEEEEecchHHHH-hCCEEEEEEC-CEEEeee
Confidence 999999 9999999999999998 8889999998853 799999999997765 4899998888 9999999
Q ss_pred Cccccc
Q 005138 197 PKPQAH 202 (712)
Q Consensus 197 ~~~e~~ 202 (712)
+.++..
T Consensus 557 ~~~~l~ 562 (576)
T TIGR02204 557 THAELI 562 (576)
T ss_pred cHHHHH
Confidence 876654
No 324
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.82 E-value=3.4e-20 Score=214.95 Aligned_cols=175 Identities=18% Similarity=0.163 Sum_probs=131.6
Q ss_pred cEEEEeeeeeec---cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-----
Q 005138 9 STQLIDGDGTFN---VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG----- 80 (712)
Q Consensus 9 ~I~l~~l~k~y~---~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g----- 80 (712)
.|++.++++.|+ ..+++++++++++|+ +++|+||||||||||+++|+|+. +|++|++...+.
T Consensus 313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~------~~~ivG~sGsGKSTLl~ll~g~~----~p~~G~i~~~g~~~~~~ 382 (569)
T PRK10789 313 ELDVNIRQFTYPQTDHPALENVNFTLKPGQ------MLGICGPTGSGKSTLLSLIQRHF----DVSEGDIRFHDIPLTKL 382 (569)
T ss_pred cEEEEEEEEECCCCCCccccCeeEEECCCC------EEEEECCCCCCHHHHHHHHhccc----CCCCCEEEECCEEHhhC
Confidence 489999999994 247999999999999 99999999999999999999999 899998533210
Q ss_pred --------e-eeccccC------CCccch------------hcccc-----------CCCc--ccccchhhHHHHHHHHH
Q 005138 81 --------I-WMARCAG------IEPCTL------------IMDLE-----------GTDG--RERGEDDTAFEKQSALF 120 (712)
Q Consensus 81 --------i-~~~~~~~------~~~~~~------------v~d~~-----------g~~~--~~r~~~~~~ferQrv~~ 120 (712)
+ +..+... .+|..+ ..+.. |.+. .+.+...+.+||||+++
T Consensus 383 ~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~l 462 (569)
T PRK10789 383 QLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISI 462 (569)
T ss_pred CHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHH
Confidence 0 0000000 000000 00011 1110 12223356679999999
Q ss_pred HHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecC
Q 005138 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (712)
Q Consensus 121 A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~ 197 (712)
|||++ +++|+||||++||+.. .+.+++.+.++. .++|+|+|||+++... .||+++++++ |++...|+
T Consensus 463 ARall~~~~illlDEpts~LD~~~------~~~i~~~l~~~~--~~~tii~itH~~~~~~-~~d~i~~l~~-G~i~~~g~ 532 (569)
T PRK10789 463 ARALLLNAEILILDDALSAVDGRT------EHQILHNLRQWG--EGRTVIISAHRLSALT-EASEILVMQH-GHIAQRGN 532 (569)
T ss_pred HHHHhcCCCEEEEECccccCCHHH------HHHHHHHHHHHh--CCCEEEEEecchhHHH-cCCEEEEEeC-CEEEEecC
Confidence 99999 9999999999999998 899999998874 3899999999998765 4899998888 99999998
Q ss_pred cccccC
Q 005138 198 KPQAHM 203 (712)
Q Consensus 198 ~~e~~~ 203 (712)
.++..+
T Consensus 533 ~~~l~~ 538 (569)
T PRK10789 533 HDQLAQ 538 (569)
T ss_pred HHHHHH
Confidence 776653
No 325
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.82 E-value=1.8e-20 Score=187.13 Aligned_cols=138 Identities=19% Similarity=0.214 Sum_probs=99.3
Q ss_pred ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee--------eccccCC---
Q 005138 22 SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW--------MARCAGI--- 89 (712)
Q Consensus 22 ~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~--------~~~~~~~--- 89 (712)
.+++++++++..|+ +++|+|||||||||||++|+|+. +|++|++...+. +. +...+++
T Consensus 6 ~il~~vsl~i~~Ge------~~~i~G~nGsGKSTLl~~i~G~~----~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q 75 (190)
T TIGR01166 6 EVLKGLNFAAERGE------VLALLGANGAGKSTLLLHLNGLL----RPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQ 75 (190)
T ss_pred ceecceeEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCceeEEECCEEccccccchHHHHhhEEEEec
Confidence 36899999999999 99999999999999999999999 899998543211 10 0001111
Q ss_pred Cc-----cchhcccc-------CCCcc--------------------cccchhhHHHHHHHHHHHHHH---HHhhhcccc
Q 005138 90 EP-----CTLIMDLE-------GTDGR--------------------ERGEDDTAFEKQSALFALAVS---DIVLINMWC 134 (712)
Q Consensus 90 ~~-----~~~v~d~~-------g~~~~--------------------~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~ 134 (712)
.+ ...+.+.. +.... ......+..|+||++||+|++ +++|+||||
T Consensus 76 ~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 155 (190)
T TIGR01166 76 DPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPT 155 (190)
T ss_pred ChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 00 00111100 11100 011122334999999999999 999999999
Q ss_pred CCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCc
Q 005138 135 HDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT 176 (712)
Q Consensus 135 ~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~ 176 (712)
++||+.. .+.+.+.+.++.++ |+|||+||||++++
T Consensus 156 ~~LD~~~------~~~~~~~l~~~~~~-~~tili~sH~~~~~ 190 (190)
T TIGR01166 156 AGLDPAG------REQMLAILRRLRAE-GMTVVISTHDVDLA 190 (190)
T ss_pred ccCCHHH------HHHHHHHHHHHHHc-CCEEEEEeeccccC
Confidence 9999998 99999999998754 89999999998753
No 326
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.8e-20 Score=206.57 Aligned_cols=174 Identities=20% Similarity=0.227 Sum_probs=134.6
Q ss_pred cEEEEeeeeeec-c-ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee---
Q 005138 9 STQLIDGDGTFN-V-SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW--- 82 (712)
Q Consensus 9 ~I~l~~l~k~y~-~-~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~--- 82 (712)
.|++.|++..|+ . ++|++++|+|+.|+ -|||+|+|||||||+||+|++.. + .+|++...+- ++
T Consensus 351 ~I~F~dV~f~y~~k~~iL~gvsf~I~kGe------kVaIvG~nGsGKSTilr~LlrF~----d-~sG~I~IdG~dik~~~ 419 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKRKVLKGVSFTIPKGE------KVAIVGSNGSGKSTILRLLLRFF----D-YSGSILIDGQDIKEVS 419 (591)
T ss_pred cEEEEeeEEEeCCCCceecceeEEecCCC------EEEEECCCCCCHHHHHHHHHHHh----c-cCCcEEECCeeHhhhC
Confidence 599999999995 3 37999999999999 99999999999999999999998 6 8898544321 11
Q ss_pred ---eccccCCCc-------cch----------------------------hcccc-C--CCcccccchhhHHHHHHHHHH
Q 005138 83 ---MARCAGIEP-------CTL----------------------------IMDLE-G--TDGRERGEDDTAFEKQSALFA 121 (712)
Q Consensus 83 ---~~~~~~~~~-------~~~----------------------------v~d~~-g--~~~~~r~~~~~~ferQrv~~A 121 (712)
+++.+++-| .++ ++..+ | +--.+|+...++.||||+++|
T Consensus 420 ~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvsla 499 (591)
T KOG0057|consen 420 LESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLA 499 (591)
T ss_pred hHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHH
Confidence 111222111 000 01111 0 112344445566699999999
Q ss_pred HHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCc
Q 005138 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (712)
Q Consensus 122 ~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~ 198 (712)
||+. +|+++||||++||.+. -.++++.+.+.. .++|+|||-|+++.+.. ||+++++++ |++...|+.
T Consensus 500 Ra~lKda~Il~~DEaTS~LD~~T------E~~i~~~i~~~~--~~rTvI~IvH~l~ll~~-~DkI~~l~n-G~v~e~gth 569 (591)
T KOG0057|consen 500 RAFLKDAPILLLDEATSALDSET------EREILDMIMDVM--SGRTVIMIVHRLDLLKD-FDKIIVLDN-GTVKEYGTH 569 (591)
T ss_pred HHHhcCCCeEEecCcccccchhh------HHHHHHHHHHhc--CCCeEEEEEecchhHhc-CCEEEEEEC-CeeEEeccH
Confidence 9999 9999999999999998 889999998843 48999999999998875 899999988 999999998
Q ss_pred ccccC
Q 005138 199 PQAHM 203 (712)
Q Consensus 199 ~e~~~ 203 (712)
.+.+.
T Consensus 570 ~ell~ 574 (591)
T KOG0057|consen 570 SELLA 574 (591)
T ss_pred HHHhh
Confidence 87765
No 327
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.82 E-value=6e-21 Score=186.49 Aligned_cols=184 Identities=12% Similarity=0.116 Sum_probs=137.7
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeec--
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMA-- 84 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~-- 84 (712)
+.+.+.|++.+|+ ..++++++|.+..|+ .-+|||||||||||+|-.|.|.. +|+.|+....+..-+.
T Consensus 4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~Ge------lr~lIGpNGAGKTT~mD~ItGKt----rp~~G~v~f~g~~dl~~~ 73 (249)
T COG4674 4 IILYLDGVSVSFGGFKALNDLSFSVDPGE------LRVLIGPNGAGKTTLMDVITGKT----RPQEGEVLFDGDTDLTKL 73 (249)
T ss_pred ceEEEeceEEEEcceeeeeeeEEEecCCe------EEEEECCCCCCceeeeeeecccC----CCCcceEEEcCchhhccC
Confidence 4689999999995 578999999999999 99999999999999999999999 8999985433311110
Q ss_pred -------cccC-------CCccchhcccc--------C----CCccccc------c-----------------hhhHHHH
Q 005138 85 -------RCAG-------IEPCTLIMDLE--------G----TDGRERG------E-----------------DDTAFEK 115 (712)
Q Consensus 85 -------~~~~-------~~~~~~v~d~~--------g----~~~~~r~------~-----------------~~~~fer 115 (712)
..+| ......|.++. + +..+.+. + ..+..||
T Consensus 74 ~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqK 153 (249)
T COG4674 74 PEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQK 153 (249)
T ss_pred CHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchh
Confidence 0111 01111111110 0 0001110 0 1112299
Q ss_pred HHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeE
Q 005138 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (712)
Q Consensus 116 Qrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I 192 (712)
|++-|++-++ ++|++|||++|+-... ....-++++++.. +.+|++|.|||+++..++++++++.. |.+
T Consensus 154 QwLEIGMll~Q~P~lLLlDEPvAGMTd~E------t~~taeLl~~la~--~hsilVVEHDM~Fvr~~A~~VTVlh~-G~V 224 (249)
T COG4674 154 QWLEIGMLLAQDPKLLLLDEPVAGMTDAE------TEKTAELLKSLAG--KHSILVVEHDMGFVREIADKVTVLHE-GSV 224 (249)
T ss_pred hhhhhheeeccCCcEEEecCccCCCcHHH------HHHHHHHHHHHhc--CceEEEEeccHHHHHHhhheeEEEec-cce
Confidence 9999999999 9999999999987665 7778889999864 68999999999999999999999999 999
Q ss_pred EEecCcccccCCccchhh
Q 005138 193 WDSVPKPQAHMETPLSEF 210 (712)
Q Consensus 193 ~~~g~~~e~~~~~~l~d~ 210 (712)
.++|+.+++..++...+.
T Consensus 225 L~EGsld~v~~dp~ViEv 242 (249)
T COG4674 225 LAEGSLDEVQNDPKVIEV 242 (249)
T ss_pred eecccHHHhhcCcceEee
Confidence 999999888776554443
No 328
>PLN03211 ABC transporter G-25; Provisional
Probab=99.82 E-value=1.8e-20 Score=219.67 Aligned_cols=172 Identities=13% Similarity=0.111 Sum_probs=126.7
Q ss_pred EEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCC--CCeeeccCC-e--eecc
Q 005138 12 LIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAF--KGRSQTTKG-I--WMAR 85 (712)
Q Consensus 12 l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~--sG~~~~t~g-i--~~~~ 85 (712)
+.|+++.|+ ..+|++++++++.|+ +++|+||||||||||||+|+|.. +|. +|++...+. + ...+
T Consensus 71 ~~~l~~~~~~~~iL~~vs~~i~~Ge------~~aI~GpnGaGKSTLL~iLaG~~----~~~~~sG~I~inG~~~~~~~~~ 140 (659)
T PLN03211 71 ISDETRQIQERTILNGVTGMASPGE------ILAVLGPSGSGKSTLLNALAGRI----QGNNFTGTILANNRKPTKQILK 140 (659)
T ss_pred cccccccCCCCeeeeCCEEEEECCE------EEEEECCCCCCHHHHHHHHhCCC----CCCceeEEEEECCEECchhhcc
Confidence 455667774 457999999999999 99999999999999999999998 664 787433221 0 0001
Q ss_pred ccCC-------Cccchhc----------------------------cccCCCcc-------cccchhhHHHHHHHHHHHH
Q 005138 86 CAGI-------EPCTLIM----------------------------DLEGTDGR-------ERGEDDTAFEKQSALFALA 123 (712)
Q Consensus 86 ~~~~-------~~~~~v~----------------------------d~~g~~~~-------~r~~~~~~ferQrv~~A~A 123 (712)
.+++ .+...+. +..|+... ......+..||||+.+|++
T Consensus 141 ~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~a 220 (659)
T PLN03211 141 RTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHE 220 (659)
T ss_pred ceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHH
Confidence 1111 1111111 11122110 0112245669999999999
Q ss_pred HH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCC-CcccccccccceecCCeEEEecCcc
Q 005138 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKT-RTPLENLEPVLREDIQKIWDSVPKP 199 (712)
Q Consensus 124 la---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~-~~~~~~~~~~ll~~~G~I~~~g~~~ 199 (712)
++ ++|++||||+|||+.. ...+.+.++++.++ |.|||+++|+++ .+...+|+++++.+ |+++..|++.
T Consensus 221 L~~~P~iLlLDEPtsgLD~~~------~~~l~~~L~~l~~~-g~TvI~~sH~~~~~i~~~~D~iilL~~-G~iv~~G~~~ 292 (659)
T PLN03211 221 MLINPSLLILDEPTSGLDATA------AYRLVLTLGSLAQK-GKTIVTSMHQPSSRVYQMFDSVLVLSE-GRCLFFGKGS 292 (659)
T ss_pred HHhCCCEEEEeCCCCCcCHHH------HHHHHHHHHHHHhC-CCEEEEEecCCCHHHHHhhceEEEecC-CcEEEECCHH
Confidence 99 9999999999999998 99999999999764 999999999998 57778999999988 9999999875
Q ss_pred cc
Q 005138 200 QA 201 (712)
Q Consensus 200 e~ 201 (712)
+.
T Consensus 293 ~~ 294 (659)
T PLN03211 293 DA 294 (659)
T ss_pred HH
Confidence 54
No 329
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.7e-20 Score=213.20 Aligned_cols=176 Identities=18% Similarity=0.225 Sum_probs=136.1
Q ss_pred cEEEEeeeeeecc----ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC----
Q 005138 9 STQLIDGDGTFNV----SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG---- 80 (712)
Q Consensus 9 ~I~l~~l~k~y~~----~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g---- 80 (712)
.|++.|+++.|.. .+++|++|+|.+|+ +|||+||||+||||+.++|-.+. +|++|++..++-
T Consensus 465 ~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe------~vALVGPSGsGKSTiasLL~rfY----~PtsG~IllDG~~i~~ 534 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTRPDVPVLKNLSFTIRPGE------VVALVGPSGSGKSTIASLLLRFY----DPTSGRILLDGVPISD 534 (716)
T ss_pred eEEEEEeeeecCCCCCchhhcCceeeeCCCC------EEEEECCCCCCHHHHHHHHHHhc----CCCCCeEEECCeehhh
Confidence 5999999999942 37999999999999 99999999999999999999999 999999544321
Q ss_pred ---eeeccccCC---C----------ccc----------------------hhcccc---CCCcccccchhhHHHHHHHH
Q 005138 81 ---IWMARCAGI---E----------PCT----------------------LIMDLE---GTDGRERGEDDTAFEKQSAL 119 (712)
Q Consensus 81 ---i~~~~~~~~---~----------~~~----------------------~v~d~~---g~~~~~r~~~~~~ferQrv~ 119 (712)
.|+++.++. + |.. ++...+ .+.-.+++-...+.||||++
T Consensus 535 ~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIA 614 (716)
T KOG0058|consen 535 INHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIA 614 (716)
T ss_pred cCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHH
Confidence 122222221 1 111 111111 12223444445566999999
Q ss_pred HHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEec
Q 005138 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 120 ~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g 196 (712)
|||||. .||||||.|++||.++ -..|-+.+.++.+ +.|+|++.|.++.+.. +++++++++ |+++..|
T Consensus 615 IARALlr~P~VLILDEATSALDaeS------E~lVq~aL~~~~~--~rTVlvIAHRLSTV~~-Ad~Ivvi~~-G~V~E~G 684 (716)
T KOG0058|consen 615 IARALLRNPRVLILDEATSALDAES------EYLVQEALDRLMQ--GRTVLVIAHRLSTVRH-ADQIVVIDK-GRVVEMG 684 (716)
T ss_pred HHHHHhcCCCEEEEechhhhcchhh------HHHHHHHHHHhhc--CCeEEEEehhhhHhhh-ccEEEEEcC-CeEEecc
Confidence 999999 9999999999999998 7778888877764 6899999999998875 788888888 9999999
Q ss_pred CcccccCC
Q 005138 197 PKPQAHME 204 (712)
Q Consensus 197 ~~~e~~~~ 204 (712)
+-.+.++.
T Consensus 685 ~h~eLl~~ 692 (716)
T KOG0058|consen 685 THDELLSK 692 (716)
T ss_pred cHHHHhhC
Confidence 88777654
No 330
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.82 E-value=4.7e-20 Score=218.48 Aligned_cols=174 Identities=18% Similarity=0.229 Sum_probs=133.6
Q ss_pred cEEEEeeeeeec---cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeee--
Q 005138 9 STQLIDGDGTFN---VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM-- 83 (712)
Q Consensus 9 ~I~l~~l~k~y~---~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~-- 83 (712)
.|++.|+++.|+ ..+++++++++++|+ .++|+|+||||||||+|+|+|+. +|++|++...+ ..+
T Consensus 455 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~------~vaivG~sGsGKSTL~~ll~g~~----~p~~G~I~idg-~~i~~ 523 (694)
T TIGR01846 455 AITFENIRFRYAPDSPEVLSNLNLDIKPGE------FIGIVGPSGSGKSTLTKLLQRLY----TPQHGQVLVDG-VDLAI 523 (694)
T ss_pred eEEEEEEEEEcCCCCccccccceEEECCCC------EEEEECCCCCCHHHHHHHHhcCC----CCCCceEEECC-Eehhh
Confidence 599999999994 237999999999999 99999999999999999999999 89999854322 111
Q ss_pred ------ccccCC-------------Cccch----------------------hccc-cCCCc--ccccchhhHHHHHHHH
Q 005138 84 ------ARCAGI-------------EPCTL----------------------IMDL-EGTDG--RERGEDDTAFEKQSAL 119 (712)
Q Consensus 84 ------~~~~~~-------------~~~~~----------------------v~d~-~g~~~--~~r~~~~~~ferQrv~ 119 (712)
+..+++ +|..+ +... .|++. .+.+...+.+||||++
T Consensus 524 ~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~ 603 (694)
T TIGR01846 524 ADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIA 603 (694)
T ss_pred CCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHH
Confidence 111110 00000 0000 01111 1223345667999999
Q ss_pred HHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEec
Q 005138 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 120 ~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g 196 (712)
+|||+. ++|||||||++||+.. .+.+.+.+.++. .++|+|+|||+++.+.. ||+++++++ |+++..|
T Consensus 604 lARall~~~~ililDEpts~LD~~~------~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~ii~l~~-G~i~~~g 673 (694)
T TIGR01846 604 IARALVGNPRILIFDEATSALDYES------EALIMRNMREIC--RGRTVIIIAHRLSTVRA-CDRIIVLEK-GQIAESG 673 (694)
T ss_pred HHHHHHhCCCEEEEECCCcCCCHHH------HHHHHHHHHHHh--CCCEEEEEeCChHHHHh-CCEEEEEeC-CEEEEeC
Confidence 999999 9999999999999998 999999999884 37999999999988764 899999988 9999999
Q ss_pred CcccccC
Q 005138 197 PKPQAHM 203 (712)
Q Consensus 197 ~~~e~~~ 203 (712)
+.++..+
T Consensus 674 ~~~~l~~ 680 (694)
T TIGR01846 674 RHEELLA 680 (694)
T ss_pred CHHHHHH
Confidence 9877654
No 331
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=6.7e-20 Score=183.78 Aligned_cols=176 Identities=20% Similarity=0.155 Sum_probs=127.8
Q ss_pred cccEEEEeeeeeec--cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeecc------
Q 005138 7 CCSTQLIDGDGTFN--VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT------ 78 (712)
Q Consensus 7 ~~~I~l~~l~k~y~--~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t------ 78 (712)
|++++|+|+..+.. ..+|++++++|+.|+ +.+|+||||||||||.++|+|.. --.+++|++...
T Consensus 1 m~~L~I~dLhv~v~~~keILkgvnL~v~~GE------vhaiMGPNGsGKSTLa~~i~G~p--~Y~Vt~G~I~~~GedI~~ 72 (251)
T COG0396 1 MMMLEIKDLHVEVEGKKEILKGVNLTVKEGE------VHAIMGPNGSGKSTLAYTIMGHP--KYEVTEGEILFDGEDILE 72 (251)
T ss_pred CceeEEeeeEEEecCchhhhcCcceeEcCCc------EEEEECCCCCCHHHHHHHHhCCC--CceEecceEEECCccccc
Confidence 35899999999995 378999999999999 99999999999999999999975 114566763221
Q ss_pred --------CCeeeccccC-CCccchh----------------------------ccccCCCcc--cc--cchhhHHHHHH
Q 005138 79 --------KGIWMARCAG-IEPCTLI----------------------------MDLEGTDGR--ER--GEDDTAFEKQS 117 (712)
Q Consensus 79 --------~gi~~~~~~~-~~~~~~v----------------------------~d~~g~~~~--~r--~~~~~~ferQr 117 (712)
.|++++-+.. ..+...+ +...+++.. .| .+--+..||+|
T Consensus 73 l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR 152 (251)
T COG0396 73 LSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKR 152 (251)
T ss_pred CCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHH
Confidence 2333321110 0000000 011111110 00 01112239999
Q ss_pred HHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccc-cccccceecCCeEE
Q 005138 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE-NLEPVLREDIQKIW 193 (712)
Q Consensus 118 v~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~-~~~~~ll~~~G~I~ 193 (712)
.-++..++ ++.|||||-||||... ++.|.+.+.++..+ |.++|++||.-.....+ .|.+.++.+ |+|+
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIda------lk~V~~~i~~lr~~-~~~~liITHy~rll~~i~pD~vhvl~~-GrIv 224 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDA------LKIVAEGINALREE-GRGVLIITHYQRLLDYIKPDKVHVLYD-GRIV 224 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHH------HHHHHHHHHHHhcC-CCeEEEEecHHHHHhhcCCCEEEEEEC-CEEE
Confidence 99998888 9999999999999998 99999999999876 99999999998665443 377888888 9999
Q ss_pred EecCc
Q 005138 194 DSVPK 198 (712)
Q Consensus 194 ~~g~~ 198 (712)
.+|.+
T Consensus 225 ~sG~~ 229 (251)
T COG0396 225 KSGDP 229 (251)
T ss_pred ecCCH
Confidence 99987
No 332
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.80 E-value=8.2e-20 Score=210.82 Aligned_cols=168 Identities=15% Similarity=0.169 Sum_probs=125.6
Q ss_pred cEEEEeeeeeec--cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeee---
Q 005138 9 STQLIDGDGTFN--VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM--- 83 (712)
Q Consensus 9 ~I~l~~l~k~y~--~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~--- 83 (712)
.|++.|+++.|+ ..+++++++++++|+ .++|+||||||||||+++|+|+. +|++|++...+ ..+
T Consensus 322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~------~~aivG~sGsGKSTL~~ll~g~~----~~~~G~i~~~g-~~~~~~ 390 (547)
T PRK10522 322 TLELRNVTFAYQDNGFSVGPINLTIKRGE------LLFLIGGNGSGKSTLAMLLTGLY----QPQSGEILLDG-KPVTAE 390 (547)
T ss_pred eEEEEEEEEEeCCCCeEEecceEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECC-EECCCC
Confidence 599999999994 347999999999999 99999999999999999999999 89999853321 110
Q ss_pred -----ccccCC-------------Ccc--c---h---hccccCCCcc-------cccchhhHHHHHHHHHHHHHH---HH
Q 005138 84 -----ARCAGI-------------EPC--T---L---IMDLEGTDGR-------ERGEDDTAFEKQSALFALAVS---DI 127 (712)
Q Consensus 84 -----~~~~~~-------------~~~--~---~---v~d~~g~~~~-------~r~~~~~~ferQrv~~A~Ala---~i 127 (712)
...+++ ++. . - +.+..|.... .++...+.+||||+++|||++ ++
T Consensus 391 ~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~i 470 (547)
T PRK10522 391 QPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDI 470 (547)
T ss_pred CHHHHhhheEEEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 011110 010 0 0 0111122111 013345678999999999999 99
Q ss_pred hhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEe
Q 005138 128 VLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (712)
Q Consensus 128 LlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~ 195 (712)
||+||||++||+.. .+.+.+.+.+..+..+.|+|+|||+++.. ..||+++++++ |++...
T Consensus 471 lilDE~ts~LD~~~------~~~i~~~l~~~~~~~~~tvi~itH~~~~~-~~~d~i~~l~~-G~i~e~ 530 (547)
T PRK10522 471 LLLDEWAADQDPHF------RREFYQVLLPLLQEMGKTIFAISHDDHYF-IHADRLLEMRN-GQLSEL 530 (547)
T ss_pred EEEECCCCCCCHHH------HHHHHHHHHHHHHhCCCEEEEEEechHHH-HhCCEEEEEEC-CEEEEe
Confidence 99999999999998 88888888766543489999999999654 46899999988 999865
No 333
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.80 E-value=1.5e-19 Score=208.98 Aligned_cols=167 Identities=15% Similarity=0.116 Sum_probs=123.1
Q ss_pred cEEEEeeeeeecc------ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee
Q 005138 9 STQLIDGDGTFNV------SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW 82 (712)
Q Consensus 9 ~I~l~~l~k~y~~------~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~ 82 (712)
.|++.|+++.|+. .+|++++++++.|+ +++|+||||||||||+++|+|+. +|++|++...+ ..
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~------~~aivG~sGsGKSTl~~ll~g~~----~p~~G~i~~~g-~~ 405 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGD------IVFIVGENGCGKSTLAKLFCGLY----IPQEGEILLDG-AA 405 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEEcCCc------EEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECC-EE
Confidence 5999999999953 27999999999999 99999999999999999999999 89999854332 11
Q ss_pred ec--------cccCC--Cccch----h----------------ccccCCCcc--------cccchhhHHHHHHHHHHHHH
Q 005138 83 MA--------RCAGI--EPCTL----I----------------MDLEGTDGR--------ERGEDDTAFEKQSALFALAV 124 (712)
Q Consensus 83 ~~--------~~~~~--~~~~~----v----------------~d~~g~~~~--------~r~~~~~~ferQrv~~A~Al 124 (712)
+. ..+++ .+..+ + .+..+.... .+....+.+||||+++|||+
T Consensus 406 i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRal 485 (555)
T TIGR01194 406 VSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAW 485 (555)
T ss_pred CCCCCHHHHHhhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHH
Confidence 11 11111 00000 0 011111110 11123456799999999999
Q ss_pred H---HHhhhccccCCCchhhhhChhhHHHHHHHHHH-hhCCCCceEEEEecCCCCcccccccccceecCCeEEEe
Q 005138 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMR-LFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (712)
Q Consensus 125 a---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~-L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~ 195 (712)
. +++|+||||++||+.. .+.+.+.+.+ +.. .++|+|+|||+++.. ..||+++++++ |+++..
T Consensus 486 l~~~~ililDE~ts~LD~~~------~~~i~~~l~~~~~~-~~~tiiiisH~~~~~-~~~d~i~~l~~-G~i~~~ 551 (555)
T TIGR01194 486 LEDRPILLFDEWAADQDPAF------KRFFYEELLPDLKR-QGKTIIIISHDDQYF-ELADQIIKLAA-GCIVKD 551 (555)
T ss_pred HcCCCEEEEeCCccCCCHHH------HHHHHHHHHHHHHh-CCCEEEEEeccHHHH-HhCCEEEEEEC-CEEEEe
Confidence 9 9999999999999998 8888876654 433 489999999999754 46999999988 999764
No 334
>PLN03232 ABC transporter C family member; Provisional
Probab=99.80 E-value=1.2e-19 Score=229.74 Aligned_cols=175 Identities=17% Similarity=0.147 Sum_probs=135.4
Q ss_pred cEEEEeeeeeec---cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeee--
Q 005138 9 STQLIDGDGTFN---VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM-- 83 (712)
Q Consensus 9 ~I~l~~l~k~y~---~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~-- 83 (712)
.|+++|++.+|. ..+|++++++|++|+ .|||+|++|||||||+++|+|+. +|++|++...+ +-+
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~Ge------kvaIVG~SGSGKSTL~~lL~rl~----~p~~G~I~IdG-~di~~ 1302 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSE------KVGVVGRTGAGKSSMLNALFRIV----ELEKGRIMIDD-CDVAK 1302 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----cCCCceEEECC-EEhhh
Confidence 499999999994 247999999999999 99999999999999999999999 89999954322 111
Q ss_pred ------ccccCC-------------Cccch-----------hccc-----------cCCCc--ccccchhhHHHHHHHHH
Q 005138 84 ------ARCAGI-------------EPCTL-----------IMDL-----------EGTDG--RERGEDDTAFEKQSALF 120 (712)
Q Consensus 84 ------~~~~~~-------------~~~~~-----------v~d~-----------~g~~~--~~r~~~~~~ferQrv~~ 120 (712)
+..+++ +|... +++. .|++. .+.+...+.+||||+++
T Consensus 1303 i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaL 1382 (1495)
T PLN03232 1303 FGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSL 1382 (1495)
T ss_pred CCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHH
Confidence 111110 00000 0000 12211 12333456779999999
Q ss_pred HHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecC
Q 005138 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (712)
Q Consensus 121 A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~ 197 (712)
|||+. +||||||||++||+.. .+.|.+.+++.++ ++|+|+|+|+++.+.. ||+++++++ |+|++.|+
T Consensus 1383 ARALLr~~~ILILDEATSaLD~~T------e~~Iq~~L~~~~~--~~TvI~IAHRl~ti~~-~DrIlVL~~-G~ivE~Gt 1452 (1495)
T PLN03232 1383 ARALLRRSKILVLDEATASVDVRT------DSLIQRTIREEFK--SCTMLVIAHRLNTIID-CDKILVLSS-GQVLEYDS 1452 (1495)
T ss_pred HHHHHhCCCEEEEECCcccCCHHH------HHHHHHHHHHHcC--CCEEEEEeCCHHHHHh-CCEEEEEEC-CEEEEECC
Confidence 99999 9999999999999998 8888899988763 7999999999987765 899999998 99999999
Q ss_pred cccccCC
Q 005138 198 KPQAHME 204 (712)
Q Consensus 198 ~~e~~~~ 204 (712)
+.+.+++
T Consensus 1453 ~~eLl~~ 1459 (1495)
T PLN03232 1453 PQELLSR 1459 (1495)
T ss_pred HHHHHhC
Confidence 9887754
No 335
>PLN03130 ABC transporter C family member; Provisional
Probab=99.79 E-value=1.3e-19 Score=230.13 Aligned_cols=175 Identities=17% Similarity=0.167 Sum_probs=135.9
Q ss_pred cEEEEeeeeeecc---ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeee--
Q 005138 9 STQLIDGDGTFNV---SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM-- 83 (712)
Q Consensus 9 ~I~l~~l~k~y~~---~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~-- 83 (712)
.|+++|++.+|.+ .+|++++++|++|+ .|||+|++|||||||+++|+|+. +|++|++...+ +-+
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~Ge------kVaIVGrSGSGKSTLl~lL~rl~----~p~~G~I~IDG-~dI~~ 1305 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSE------KVGIVGRTGAGKSSMLNALFRIV----ELERGRILIDG-CDISK 1305 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecceeEEEcCCC------EEEEECCCCCCHHHHHHHHhCcC----CCCCceEEECC-Eeccc
Confidence 5999999999942 47999999999999 99999999999999999999999 89999854322 111
Q ss_pred ------ccccCC---C----------ccc---------------------hhccc-cCCCc--ccccchhhHHHHHHHHH
Q 005138 84 ------ARCAGI---E----------PCT---------------------LIMDL-EGTDG--RERGEDDTAFEKQSALF 120 (712)
Q Consensus 84 ------~~~~~~---~----------~~~---------------------~v~d~-~g~~~--~~r~~~~~~ferQrv~~ 120 (712)
+..+++ + |.. ++... .|++. .+++...+.+||||++|
T Consensus 1306 i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaL 1385 (1622)
T PLN03130 1306 FGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSL 1385 (1622)
T ss_pred CCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHH
Confidence 111110 0 000 00000 12221 12333456679999999
Q ss_pred HHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecC
Q 005138 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (712)
Q Consensus 121 A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~ 197 (712)
|||+. +||||||||++||... -+.|.+.+++.++ ++|+|+|+|+++.+.. ||++++|++ |+|++.|+
T Consensus 1386 ARALLr~p~ILILDEATSaLD~~T------e~~Iq~~I~~~~~--~~TvI~IAHRL~tI~~-~DrIlVLd~-G~IvE~Gt 1455 (1622)
T PLN03130 1386 ARALLRRSKILVLDEATAAVDVRT------DALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILVLDA-GRVVEFDT 1455 (1622)
T ss_pred HHHHHcCCCEEEEECCCCCCCHHH------HHHHHHHHHHHCC--CCEEEEEeCChHHHHh-CCEEEEEEC-CEEEEeCC
Confidence 99999 9999999999999998 8889999998864 7999999999988765 899999998 99999999
Q ss_pred cccccCC
Q 005138 198 KPQAHME 204 (712)
Q Consensus 198 ~~e~~~~ 204 (712)
+.+++++
T Consensus 1456 ~~eLl~~ 1462 (1622)
T PLN03130 1456 PENLLSN 1462 (1622)
T ss_pred HHHHHhC
Confidence 9887753
No 336
>PLN03073 ABC transporter F family; Provisional
Probab=99.79 E-value=2.1e-19 Score=212.17 Aligned_cols=175 Identities=10% Similarity=-0.012 Sum_probs=124.2
Q ss_pred CcccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC----C
Q 005138 6 ECCSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK----G 80 (712)
Q Consensus 6 ~~~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~----g 80 (712)
.+.+|++.|+++.|+ ..+|++++++|..|+ ++||+|||||||||||++|+|..... .|.+|++..-. |
T Consensus 174 ~~~~I~i~nls~~y~~~~ll~~isl~i~~Ge------~~gLvG~NGsGKSTLLr~l~g~~~~g-~p~~g~I~~~~Q~~~g 246 (718)
T PLN03073 174 AIKDIHMENFSISVGGRDLIVDASVTLAFGR------HYGLVGRNGTGKTTFLRYMAMHAIDG-IPKNCQILHVEQEVVG 246 (718)
T ss_pred CceeEEEceEEEEeCCCEEEECCEEEECCCC------EEEEECCCCCCHHHHHHHHcCCCCCC-CCCCCEEEEEeccCCC
Confidence 345799999999995 457999999999999 99999999999999999999964110 25556632100 0
Q ss_pred --eee---------------ccccCCCc-------c-c----h-------------------------------------
Q 005138 81 --IWM---------------ARCAGIEP-------C-T----L------------------------------------- 94 (712)
Q Consensus 81 --i~~---------------~~~~~~~~-------~-~----~------------------------------------- 94 (712)
... ....++.. . . .
T Consensus 247 ~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~ 326 (718)
T PLN03073 247 DDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAAS 326 (718)
T ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 000 00000000 0 0 0
Q ss_pred hccccCCCc---ccccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEE
Q 005138 95 IMDLEGTDG---RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMF 168 (712)
Q Consensus 95 v~d~~g~~~---~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~ 168 (712)
++...|+.. .......+..||||++||++++ ++|||||||++||+.. ...+.+.+.++ +.|+|+
T Consensus 327 ~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~------~~~l~~~L~~~----~~tvii 396 (718)
T PLN03073 327 ILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHA------VLWLETYLLKW----PKTFIV 396 (718)
T ss_pred HHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH------HHHHHHHHHHc----CCEEEE
Confidence 000011110 0111234556999999999999 9999999999999998 88888888775 679999
Q ss_pred EecCCCCcccccccccceecCCeEE-EecCc
Q 005138 169 VIRDKTRTPLENLEPVLREDIQKIW-DSVPK 198 (712)
Q Consensus 169 VtHDl~~~~~~~~~~~ll~~~G~I~-~~g~~ 198 (712)
||||.+.+...|++++++.+ |++. ..|+.
T Consensus 397 vsHd~~~l~~~~d~i~~l~~-g~i~~~~g~~ 426 (718)
T PLN03073 397 VSHAREFLNTVVTDILHLHG-QKLVTYKGDY 426 (718)
T ss_pred EECCHHHHHHhCCEEEEEEC-CEEEEeCCCH
Confidence 99999999888999999988 9986 45553
No 337
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.79 E-value=6.2e-20 Score=175.54 Aligned_cols=167 Identities=12% Similarity=0.142 Sum_probs=119.8
Q ss_pred cEEEEeeeeee-ccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee----
Q 005138 9 STQLIDGDGTF-NVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW---- 82 (712)
Q Consensus 9 ~I~l~~l~k~y-~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~---- 82 (712)
.++++++...- +...|+++++.+..|+ .++|.||+||||||||++++.+. +|++|.....+. +.
T Consensus 3 lle~kq~~y~a~~a~il~~isl~v~~Ge------~iaitGPSG~GKStllk~va~Li----sp~~G~l~f~Ge~vs~~~p 72 (223)
T COG4619 3 LLELKQVGYLAGDAKILNNISLSVRAGE------FIAITGPSGCGKSTLLKIVASLI----SPTSGTLLFEGEDVSTLKP 72 (223)
T ss_pred chHHHHHHhhcCCCeeecceeeeecCCc------eEEEeCCCCccHHHHHHHHHhcc----CCCCceEEEcCccccccCh
Confidence 34555543333 3446999999999999 99999999999999999999999 999998432211 10
Q ss_pred --eccccC-------------CCccchhcccc----------------CCCcc---cccchhhHHHHHHHHHHHHHH---
Q 005138 83 --MARCAG-------------IEPCTLIMDLE----------------GTDGR---ERGEDDTAFEKQSALFALAVS--- 125 (712)
Q Consensus 83 --~~~~~~-------------~~~~~~v~d~~----------------g~~~~---~r~~~~~~ferQrv~~A~Ala--- 125 (712)
++..+. ++|..+.+... +++.. .+..+.++.|+||+++++.|.
T Consensus 73 ea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P 152 (223)
T COG4619 73 EAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMP 152 (223)
T ss_pred HHHHHHHHHHHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCC
Confidence 111111 11222211111 11100 111233445999999999998
Q ss_pred HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeE
Q 005138 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (712)
Q Consensus 126 ~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I 192 (712)
+||+|||||++||+.+ .+.|-+++.++++++...++.||||.+.+...+++++-+.. |++
T Consensus 153 ~ILLLDE~TsALD~~n------kr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~-G~~ 212 (223)
T COG4619 153 KILLLDEITSALDESN------KRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQP-GHA 212 (223)
T ss_pred ceEEecCchhhcChhh------HHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEecc-Ccc
Confidence 9999999999999998 89999999999987899999999999988777888776666 654
No 338
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.79 E-value=1.8e-19 Score=226.75 Aligned_cols=163 Identities=12% Similarity=0.106 Sum_probs=123.9
Q ss_pred cEEEEeeeeeecc----ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCe---
Q 005138 9 STQLIDGDGTFNV----SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGI--- 81 (712)
Q Consensus 9 ~I~l~~l~k~y~~----~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi--- 81 (712)
.|++.|+++.|+. .+|++++++++.|+ +++|+||||||||||+++|+|+. +|++|++...+|.
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge------~vaIvG~SGsGKSTLl~lL~gl~----~p~~G~I~i~~g~~i~ 451 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGK------TYAFVGESGCGKSTILKLIERLY----DPTEGDIIINDSHNLK 451 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCC------EEEEECCCCCCHHHHHHHHHHhc----cCCCCeEEEeCCcchh
Confidence 5899999999952 47999999999999 99999999999999999999999 8999996553321
Q ss_pred -----eeccccCC---Cccc---hhcccc--C------------------------------------------------
Q 005138 82 -----WMARCAGI---EPCT---LIMDLE--G------------------------------------------------ 100 (712)
Q Consensus 82 -----~~~~~~~~---~~~~---~v~d~~--g------------------------------------------------ 100 (712)
+++..+++ ++.. .+.+.. |
T Consensus 452 ~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (1466)
T PTZ00265 452 DINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDS 531 (1466)
T ss_pred hCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccch
Confidence 11122221 0000 010000 0
Q ss_pred ---------------------------------CC------cccccchhhHHHHHHHHHHHHHH---HHhhhccccCCCc
Q 005138 101 ---------------------------------TD------GRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIG 138 (712)
Q Consensus 101 ---------------------------------~~------~~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD 138 (712)
++ -.+++...+.+||||++||||++ ++|||||||++||
T Consensus 532 ~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD 611 (1466)
T PTZ00265 532 NELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLD 611 (1466)
T ss_pred hhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccC
Confidence 00 01122234556999999999999 9999999999999
Q ss_pred hhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceec
Q 005138 139 REQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (712)
Q Consensus 139 ~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~ 188 (712)
+.. ...+.+.+.++.+..|.|+|+|+|+++.+ ..||+++++.+
T Consensus 612 ~~s------e~~i~~~L~~~~~~~g~TvIiIsHrls~i-~~aD~Iivl~~ 654 (1466)
T PTZ00265 612 NKS------EYLVQKTINNLKGNENRITIIIAHRLSTI-RYANTIFVLSN 654 (1466)
T ss_pred HHH------HHHHHHHHHHHhhcCCCEEEEEeCCHHHH-HhCCEEEEEeC
Confidence 998 99999999998754589999999999876 46999999987
No 339
>PRK13409 putative ATPase RIL; Provisional
Probab=99.78 E-value=2.3e-19 Score=208.09 Aligned_cols=161 Identities=16% Similarity=0.100 Sum_probs=117.3
Q ss_pred cEEEEe--------eeeeecc--ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeec-
Q 005138 9 STQLID--------GDGTFNV--SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT- 77 (712)
Q Consensus 9 ~I~l~~--------l~k~y~~--~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~- 77 (712)
+|.|+| +++.|+. .+|++++ .+..|+ ++||+||||||||||||+|+|+. +|++|++..
T Consensus 65 a~~i~~~p~~~~~~~~~~yg~~~~~L~~l~-~i~~Ge------v~gLvG~NGaGKSTLlkiL~G~l----~p~~G~i~~~ 133 (590)
T PRK13409 65 AISIVNLPEELEEEPVHRYGVNGFKLYGLP-IPKEGK------VTGILGPNGIGKTTAVKILSGEL----IPNLGDYEEE 133 (590)
T ss_pred eEEEeeCchhhccCceEEecCCceeEecCC-cCCCCC------EEEEECCCCCCHHHHHHHHhCCc----cCCCccccCC
Confidence 466665 4677853 3689998 788888 99999999999999999999998 899998630
Q ss_pred ---------cCCeee--------------ccccCC---Cccc---hhc----------------cccCCCc--ccccchh
Q 005138 78 ---------TKGIWM--------------ARCAGI---EPCT---LIM----------------DLEGTDG--RERGEDD 110 (712)
Q Consensus 78 ---------t~gi~~--------------~~~~~~---~~~~---~v~----------------d~~g~~~--~~r~~~~ 110 (712)
-.|..+ .....+ .+.. .+. +..|+.. .......
T Consensus 134 ~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~L 213 (590)
T PRK13409 134 PSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISEL 213 (590)
T ss_pred CcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhC
Confidence 111100 000000 0000 011 1112211 1112234
Q ss_pred hHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccccccccee
Q 005138 111 TAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRE 187 (712)
Q Consensus 111 ~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~ 187 (712)
+..|+||++||+|++ +++||||||++||+.. +..+.+++.++.+ |.|+|+||||++.+...+++++++.
T Consensus 214 SgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~------~~~l~~~i~~l~~--g~tvIivsHd~~~l~~~~D~v~vl~ 285 (590)
T PRK13409 214 SGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQ------RLNVARLIRELAE--GKYVLVVEHDLAVLDYLADNVHIAY 285 (590)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 556999999999999 9999999999999999 9999999999865 8999999999999988899988876
Q ss_pred c
Q 005138 188 D 188 (712)
Q Consensus 188 ~ 188 (712)
+
T Consensus 286 ~ 286 (590)
T PRK13409 286 G 286 (590)
T ss_pred C
Confidence 5
No 340
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.78 E-value=3.4e-19 Score=226.01 Aligned_cols=176 Identities=15% Similarity=0.121 Sum_probs=135.2
Q ss_pred cEEEEeeeeeec---cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-e---
Q 005138 9 STQLIDGDGTFN---VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-I--- 81 (712)
Q Consensus 9 ~I~l~~l~k~y~---~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i--- 81 (712)
.|+++|++.+|. ..+|++++++|++|+ .+||+|++|||||||+++|+|+. +|++|++...+- +
T Consensus 1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~Ge------kiaIVGrTGsGKSTL~~lL~rl~----~~~~G~I~IdG~dI~~i 1353 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGE------KVGIVGRTGAGKSSLTLGLFRIN----ESAEGEIIIDGLNIAKI 1353 (1522)
T ss_pred cEEEEEEEEEeCCCCcccccceeEEEcCCC------EEEEECCCCCCHHHHHHHHhcCc----cCCCCeEEECCEEcccc
Confidence 499999999994 247999999999999 99999999999999999999999 899999543321 0
Q ss_pred ---eeccccCC-------------Cccc---------------------hhccc-cCCCc--ccccchhhHHHHHHHHHH
Q 005138 82 ---WMARCAGI-------------EPCT---------------------LIMDL-EGTDG--RERGEDDTAFEKQSALFA 121 (712)
Q Consensus 82 ---~~~~~~~~-------------~~~~---------------------~v~d~-~g~~~--~~r~~~~~~ferQrv~~A 121 (712)
.++..+++ +|.. ++... .|++. .+.+...+.+||||++||
T Consensus 1354 ~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LA 1433 (1522)
T TIGR00957 1354 GLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLA 1433 (1522)
T ss_pred CHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHH
Confidence 01111110 0000 00000 12221 123344566799999999
Q ss_pred HHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCc
Q 005138 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (712)
Q Consensus 122 ~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~ 198 (712)
||+. +||||||||++||++. -+.|.+.+++.++ ++|+|+|+|+++.+.. +|++++|++ |+|++.|++
T Consensus 1434 RALLr~~~ILiLDEaTSalD~~T------e~~Iq~~l~~~~~--~~TvI~IAHRl~ti~~-~DrIlVld~-G~IvE~G~~ 1503 (1522)
T TIGR00957 1434 RALLRKTKILVLDEATAAVDLET------DNLIQSTIRTQFE--DCTVLTIAHRLNTIMD-YTRVIVLDK-GEVAEFGAP 1503 (1522)
T ss_pred HHHHcCCCEEEEECCcccCCHHH------HHHHHHHHHHHcC--CCEEEEEecCHHHHHh-CCEEEEEEC-CEEEEECCH
Confidence 9999 9999999999999998 8888889988764 7999999999987764 899999988 999999998
Q ss_pred ccccCC
Q 005138 199 PQAHME 204 (712)
Q Consensus 199 ~e~~~~ 204 (712)
.+.+++
T Consensus 1504 ~eLl~~ 1509 (1522)
T TIGR00957 1504 SNLLQQ 1509 (1522)
T ss_pred HHHHhC
Confidence 887654
No 341
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.78 E-value=6.4e-19 Score=202.49 Aligned_cols=147 Identities=22% Similarity=0.269 Sum_probs=110.1
Q ss_pred cEEEEeeeeeec--cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC------
Q 005138 9 STQLIDGDGTFN--VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------ 80 (712)
Q Consensus 9 ~I~l~~l~k~y~--~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g------ 80 (712)
.|++.|+++.|+ ..+|+++++++++|+ .++|+||||||||||+|+|+|+. +|++|++...+.
T Consensus 334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~------~vaIvG~SGsGKSTLl~lL~g~~----~p~~G~I~i~g~~i~~~~ 403 (529)
T TIGR02868 334 TLELRDLSFGYPGSPPVLDGVSLDLPPGE------RVAILGPSGSGKSTLLMLLTGLL----DPLQGEVTLDGVSVSSLQ 403 (529)
T ss_pred eEEEEEEEEecCCCCceeecceEEEcCCC------EEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEECCEEhhhHH
Confidence 599999999994 347999999999999 99999999999999999999999 999999644321
Q ss_pred ------e-eeccccCC------Cccch------------hccc-----------cCCCc--ccccchhhHHHHHHHHHHH
Q 005138 81 ------I-WMARCAGI------EPCTL------------IMDL-----------EGTDG--RERGEDDTAFEKQSALFAL 122 (712)
Q Consensus 81 ------i-~~~~~~~~------~~~~~------------v~d~-----------~g~~~--~~r~~~~~~ferQrv~~A~ 122 (712)
+ ++.+.... +|..+ +.+. .|.+. .+++...+.+||||+++||
T Consensus 404 ~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiAR 483 (529)
T TIGR02868 404 DELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALAR 483 (529)
T ss_pred HHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHH
Confidence 0 11111000 01000 0000 11111 1233445677999999999
Q ss_pred HHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCC
Q 005138 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDK 173 (712)
Q Consensus 123 Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl 173 (712)
|+. ++|||||||++||+.. .+.+.+.+.++. .++|+|+|+|++
T Consensus 484 all~~~~iliLDE~TSaLD~~t------e~~I~~~l~~~~--~~~TvIiItHrl 529 (529)
T TIGR02868 484 ALLADAPILLLDEPTEHLDAGT------ESELLEDLLAAL--SGKTVVVITHHL 529 (529)
T ss_pred HHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHhc--CCCEEEEEecCC
Confidence 999 9999999999999998 899999998874 379999999985
No 342
>PTZ00243 ABC transporter; Provisional
Probab=99.78 E-value=3.9e-19 Score=225.25 Aligned_cols=174 Identities=17% Similarity=0.199 Sum_probs=133.8
Q ss_pred cEEEEeeeeeecc---ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeee--
Q 005138 9 STQLIDGDGTFNV---SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM-- 83 (712)
Q Consensus 9 ~I~l~~l~k~y~~---~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~-- 83 (712)
.|+++|++.+|.. .+|++++|+|+.|+ .|||+|++|||||||+++|+|+. +|++|++...+ +-+
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~Ge------kVaIVGrTGSGKSTLl~lLlrl~----~p~~G~I~IDG-~di~~ 1376 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPRE------KVGIVGRTGSGKSTLLLTFMRMV----EVCGGEIRVNG-REIGA 1376 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECC-EEccc
Confidence 4999999999942 37999999999999 99999999999999999999999 89999954322 111
Q ss_pred ------ccccCC---Cccch---h------------------ccc-----------cCCCc--ccccchhhHHHHHHHHH
Q 005138 84 ------ARCAGI---EPCTL---I------------------MDL-----------EGTDG--RERGEDDTAFEKQSALF 120 (712)
Q Consensus 84 ------~~~~~~---~~~~~---v------------------~d~-----------~g~~~--~~r~~~~~~ferQrv~~ 120 (712)
+..+++ ++.++ + ++. .|++. .+.+...+.+||||++|
T Consensus 1377 i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaL 1456 (1560)
T PTZ00243 1377 YGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCM 1456 (1560)
T ss_pred CCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHH
Confidence 111111 00000 0 000 11111 12334456679999999
Q ss_pred HHHHH----HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEec
Q 005138 121 ALAVS----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 121 A~Ala----~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g 196 (712)
|||+. ++|||||||++||+.. -+.|.+.+.+.++ ++|+|+|+|+++.+. .||++++|++ |+|++.|
T Consensus 1457 ARALL~~~~~ILlLDEATSaLD~~t------e~~Iq~~L~~~~~--~~TvI~IAHRl~ti~-~~DrIlVLd~-G~VvE~G 1526 (1560)
T PTZ00243 1457 ARALLKKGSGFILMDEATANIDPAL------DRQIQATVMSAFS--AYTVITIAHRLHTVA-QYDKIIVMDH-GAVAEMG 1526 (1560)
T ss_pred HHHHhcCCCCEEEEeCCCccCCHHH------HHHHHHHHHHHCC--CCEEEEEeccHHHHH-hCCEEEEEEC-CEEEEEC
Confidence 99999 5999999999999998 8888888888764 799999999998765 4899999988 9999999
Q ss_pred CcccccC
Q 005138 197 PKPQAHM 203 (712)
Q Consensus 197 ~~~e~~~ 203 (712)
++.+++.
T Consensus 1527 t~~eLl~ 1533 (1560)
T PTZ00243 1527 SPRELVM 1533 (1560)
T ss_pred CHHHHHh
Confidence 9988764
No 343
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.77 E-value=1.2e-18 Score=218.90 Aligned_cols=204 Identities=12% Similarity=0.074 Sum_probs=140.9
Q ss_pred cEEEEeeeeeec-----cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccC---CCCCeeeccCC
Q 005138 9 STQLIDGDGTFN-----VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD---AFKGRSQTTKG 80 (712)
Q Consensus 9 ~I~l~~l~k~y~-----~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~---p~sG~~~~t~g 80 (712)
+++++|+++.|. ..+|+++++++..|+ +++|+||||||||||||+|+|.. + |++|++...+.
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge------~~aI~G~sGaGKSTLL~~Lag~~----~~g~~~~G~I~i~G~ 828 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGT------LTALMGASGAGKTTLLNVLAERV----TTGVITGGDRLVNGR 828 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCE------EEEEECCCCCCHHHHHHHHhCCC----CCCCcceeEEEECCE
Confidence 478999999983 247999999999999 99999999999999999999998 5 56787533221
Q ss_pred -e--eeccccCC-------Cccchhc----------------------------cccCCCccc--cc----chhhHHHHH
Q 005138 81 -I--WMARCAGI-------EPCTLIM----------------------------DLEGTDGRE--RG----EDDTAFEKQ 116 (712)
Q Consensus 81 -i--~~~~~~~~-------~~~~~v~----------------------------d~~g~~~~~--r~----~~~~~ferQ 116 (712)
+ .+.+..++ .+...+. +..|+.... .. ...+..|||
T Consensus 829 ~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrq 908 (1394)
T TIGR00956 829 PLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRK 908 (1394)
T ss_pred ECChhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhh
Confidence 0 01111111 0001110 111111100 00 124566999
Q ss_pred HHHHHHHHH---H-HhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCC-cccccccccceecCCe
Q 005138 117 SALFALAVS---D-IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTR-TPLENLEPVLREDIQK 191 (712)
Q Consensus 117 rv~~A~Ala---~-iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~-~~~~~~~~~ll~~~G~ 191 (712)
|+.||++++ + +|+|||||+|||+.. ...+++.++++.++ |.|||+++|+++. +...+|+++++.+.|+
T Consensus 909 Rl~Ia~aL~~~P~~iLlLDEPTsgLD~~~------~~~i~~~L~~la~~-g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~ 981 (1394)
T TIGR00956 909 RLTIGVELVAKPKLLLFLDEPTSGLDSQT------AWSICKLMRKLADH-GQAILCTIHQPSAILFEEFDRLLLLQKGGQ 981 (1394)
T ss_pred HHHHHHHHHcCCCeEEEEcCCCCCCCHHH------HHHHHHHHHHHHHc-CCEEEEEecCCCHHHHHhcCEEEEEcCCCE
Confidence 999999999 5 899999999999998 99999999999764 9999999999985 3456899999988349
Q ss_pred EEEecCcccccCCccchhhhcccc-cccccchhhHHHHHHHH
Q 005138 192 IWDSVPKPQAHMETPLSEFFNVEV-VALSSFEEKEELFKEQV 232 (712)
Q Consensus 192 I~~~g~~~e~~~~~~l~d~f~~~~-~~l~~~~~~~~~f~~~v 232 (712)
++..|++.+. ...+.++|...= ...|.. .+|.+|.-++
T Consensus 982 iv~~G~~~~~--~~~~~~yf~~~G~~~~p~~-~NpAd~~ldv 1020 (1394)
T TIGR00956 982 TVYFGDLGEN--SHTIINYFEKHGAPKCPED-ANPAEWMLEV 1020 (1394)
T ss_pred EEEECCcccc--cchHHHHHHhcCCCCCCCC-CCHHHHHHHH
Confidence 9999986542 234566776321 133432 3455555433
No 344
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.77 E-value=9.2e-19 Score=180.02 Aligned_cols=79 Identities=11% Similarity=0.053 Sum_probs=69.1
Q ss_pred hhhHHHHHHHHHHHHHH---H--HhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccc
Q 005138 109 DDTAFEKQSALFALAVS---D--IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEP 183 (712)
Q Consensus 109 ~~~~ferQrv~~A~Ala---~--iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~ 183 (712)
..+..|+||+++|++++ + +||+||||++||+.. ...+++.+.++.+. |.|+|+||||++.+. .|+++
T Consensus 137 ~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~------~~~l~~~l~~~~~~-g~tii~itH~~~~~~-~~d~i 208 (226)
T cd03270 137 TLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRD------NDRLIETLKRLRDL-GNTVLVVEHDEDTIR-AADHV 208 (226)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHH------HHHHHHHHHHHHhC-CCEEEEEEeCHHHHH-hCCEE
Confidence 34566999999999998 2 999999999999998 99999999998754 999999999998764 79999
Q ss_pred cce------ecCCeEEEec
Q 005138 184 VLR------EDIQKIWDSV 196 (712)
Q Consensus 184 ~ll------~~~G~I~~~g 196 (712)
+++ .+ |+|+..|
T Consensus 209 ~~l~~~~~~~~-G~iv~~g 226 (226)
T cd03270 209 IDIGPGAGVHG-GEIVAQG 226 (226)
T ss_pred EEeCCCccccC-CEEEecC
Confidence 999 66 9998765
No 345
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.77 E-value=9.8e-19 Score=221.84 Aligned_cols=177 Identities=19% Similarity=0.163 Sum_probs=133.7
Q ss_pred cEEEEeeeeeecc---ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee-ec
Q 005138 9 STQLIDGDGTFNV---SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW-MA 84 (712)
Q Consensus 9 ~I~l~~l~k~y~~---~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~-~~ 84 (712)
.|++.|+++.|+. .+|++++++++.|+ +++|+|||||||||||++|.|.. +|.+|++...+.+- ..
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~------~v~IvG~~GsGKSTLl~~l~g~~----~~~~G~i~~~g~i~yv~ 705 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGA------LVAVVGQVGCGKSSLLSALLAEM----DKVEGHVHMKGSVAYVP 705 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----ccCCcEEEECCEEEEEc
Confidence 6999999999952 47999999999999 99999999999999999999998 89999865443221 11
Q ss_pred cccC------CCccch-----------h-------ccccCCC------cccccchhhHHHHHHHHHHHHHH---HHhhhc
Q 005138 85 RCAG------IEPCTL-----------I-------MDLEGTD------GRERGEDDTAFEKQSALFALAVS---DIVLIN 131 (712)
Q Consensus 85 ~~~~------~~~~~~-----------v-------~d~~g~~------~~~r~~~~~~ferQrv~~A~Ala---~iLlLD 131 (712)
+... .++..+ + .|+...+ -.+++....++||||+++|||+. +++|||
T Consensus 706 Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLD 785 (1522)
T TIGR00957 706 QQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFD 785 (1522)
T ss_pred CCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 1111 011110 0 0111111 11334445677999999999999 999999
Q ss_pred cccCCCchhhhhChhhHHHHHHHHHHhhC-CCCceEEEEecCCCCcccccccccceecCCeEEEecCcccccC
Q 005138 132 MWCHDIGREQAANKPLLKTVFQVMMRLFS-PRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (712)
Q Consensus 132 EP~~~LD~~~~a~~~l~~~v~e~l~~L~~-~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~~ 203 (712)
||+++||+.. .+.+++.+.+... ..++|+|+|||+++.+.. ||+++++++ |+++..|+.++...
T Consensus 786 Ep~saLD~~~------~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~~-G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 786 DPLSAVDAHV------GKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMSG-GKISEMGSYQELLQ 850 (1522)
T ss_pred CCccccCHHH------HHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEecC-CeEEeeCCHHHHHh
Confidence 9999999998 8889988865321 237899999999988775 899999988 99999998877653
No 346
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.77 E-value=1.1e-18 Score=200.69 Aligned_cols=159 Identities=20% Similarity=0.185 Sum_probs=117.3
Q ss_pred cEEEEeeeeeecc---ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-e---
Q 005138 9 STQLIDGDGTFNV---SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-I--- 81 (712)
Q Consensus 9 ~I~l~~l~k~y~~---~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i--- 81 (712)
.|++.|+++.|+. .+++++++++++|+ .++|+||||||||||+|+|+|+. +|++|++...+. +
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~------~~~ivG~sGsGKSTL~~ll~g~~----~~~~G~I~~~g~~i~~~ 389 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGE------RVALVGPSGAGKSTLLNLLLGFV----DPTEGSIAVNGVPLADA 389 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCC------EEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEECCEehhhC
Confidence 5999999999942 47999999999999 99999999999999999999999 999998532211 0
Q ss_pred ---eeccccCC-------------Cccch------------hcccc-----------CCC--cccccchhhHHHHHHHHH
Q 005138 82 ---WMARCAGI-------------EPCTL------------IMDLE-----------GTD--GRERGEDDTAFEKQSALF 120 (712)
Q Consensus 82 ---~~~~~~~~-------------~~~~~------------v~d~~-----------g~~--~~~r~~~~~~ferQrv~~ 120 (712)
.+++.+++ +|..+ +.+.. |.+ -.+.+...+++||||+++
T Consensus 390 ~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~l 469 (529)
T TIGR02857 390 DADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLAL 469 (529)
T ss_pred CHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHH
Confidence 00011110 00000 00000 111 112233456679999999
Q ss_pred HHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccce
Q 005138 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLR 186 (712)
Q Consensus 121 A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll 186 (712)
|||+. +++|+||||++||+.. .+.+++.+.++. .++|+|+|||+++.+. .||+++++
T Consensus 470 aRal~~~~~ililDE~ts~lD~~~------~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~~d~i~~l 529 (529)
T TIGR02857 470 ARAFLRDAPLLLLDEPTAHLDAET------EALVTEALRALA--QGRTVLLVTHRLALAE-RADRIVVL 529 (529)
T ss_pred HHHHhcCCCEEEEeCcccccCHHH------HHHHHHHHHHhc--CCCEEEEEecCHHHHH-hCCEEEeC
Confidence 99999 9999999999999998 899999999875 3799999999997764 47776653
No 347
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.77 E-value=7.4e-19 Score=221.24 Aligned_cols=178 Identities=15% Similarity=0.104 Sum_probs=129.9
Q ss_pred cEEEEeeeeeec----cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCC--------------
Q 005138 9 STQLIDGDGTFN----VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA-------------- 70 (712)
Q Consensus 9 ~I~l~~l~k~y~----~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p-------------- 70 (712)
.|++.|+++.|. ..+|+++++++++|+ .+||+||+|||||||+++|.|+. +|
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~------~vAIVG~SGsGKSTl~~LL~r~y----dp~~~~~~~~~~~~~~ 1234 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKK------TTAIVGETGSGKSTVMSLLMRFY----DLKNDHHIVFKNEHTN 1234 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcCCC------EEEEECCCCCCHHHHHHHHHHhC----CCcccccccccccccc
Confidence 499999999994 247999999999999 99999999999999999999998 77
Q ss_pred ----------------------------------------CCCeeeccCC-------eeeccccCC-------------C
Q 005138 71 ----------------------------------------FKGRSQTTKG-------IWMARCAGI-------------E 90 (712)
Q Consensus 71 ----------------------------------------~sG~~~~t~g-------i~~~~~~~~-------------~ 90 (712)
++|++...+- .+++..+++ +
T Consensus 1235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIre 1314 (1466)
T PTZ00265 1235 DMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYE 1314 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHH
Confidence 3455321110 001111111 0
Q ss_pred ccchh----------------------ccc-cCCC--cccccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhh
Q 005138 91 PCTLI----------------------MDL-EGTD--GRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQA 142 (712)
Q Consensus 91 ~~~~v----------------------~d~-~g~~--~~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~ 142 (712)
|..+. ... .|.+ -.+++...+++||||++||||+. +||||||||++||+..
T Consensus 1315 NI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~s- 1393 (1466)
T PTZ00265 1315 NIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNS- 1393 (1466)
T ss_pred HHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH-
Confidence 11110 000 0111 12334445677999999999999 9999999999999998
Q ss_pred hChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecC---CeEE-EecCcccccC
Q 005138 143 ANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDI---QKIW-DSVPKPQAHM 203 (712)
Q Consensus 143 a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~---G~I~-~~g~~~e~~~ 203 (712)
.+.|.+.+.++....++|+|+|+|+++.+. .||+++++++. |+++ +.|+.++++.
T Consensus 1394 -----E~~I~~~L~~~~~~~~~TvIiIaHRlsti~-~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1394 -----EKLIEKTIVDIKDKADKTIITIAHRIASIK-RSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred -----HHHHHHHHHHHhccCCCEEEEEechHHHHH-hCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 889999998885324899999999997765 48999988762 7855 7899877764
No 348
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.76 E-value=2e-19 Score=173.00 Aligned_cols=188 Identities=18% Similarity=0.208 Sum_probs=139.4
Q ss_pred ccEEEEeeeeeeccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC---ee--
Q 005138 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG---IW-- 82 (712)
Q Consensus 8 ~~I~l~~l~k~y~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g---i~-- 82 (712)
++++++|+...- -|-+++..++.|+ ++-+||||||||||||-.|+|+. |.+|.++..+. .|
T Consensus 2 ~l~qln~v~~~t---RL~plS~qv~aGe------~~HliGPNGaGKSTLLA~lAGm~-----~~sGsi~~~G~~l~~~~~ 67 (248)
T COG4138 2 ILMQLNDVAEST---RLGPLSGEVRAGE------ILHLVGPNGAGKSTLLARMAGMT-----SGSGSIQFAGQPLEAWSA 67 (248)
T ss_pred ceeeeccccccc---cccccccccccce------EEEEECCCCccHHHHHHHHhCCC-----CCCceEEECCcchhHHhH
Confidence 468888887654 3678999999999 99999999999999999999998 88898664432 11
Q ss_pred --eccccCC----Cccch---hc--------------------cccCCCcccc--cchhhHHHHHHHHHHHHHH------
Q 005138 83 --MARCAGI----EPCTL---IM--------------------DLEGTDGRER--GEDDTAFEKQSALFALAVS------ 125 (712)
Q Consensus 83 --~~~~~~~----~~~~~---v~--------------------d~~g~~~~~r--~~~~~~ferQrv~~A~Ala------ 125 (712)
+++...| ....+ |+ +..+++.... .......|-|||-+|..+.
T Consensus 68 ~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~ 147 (248)
T COG4138 68 TELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDA 147 (248)
T ss_pred hHHHHHHHHHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCC
Confidence 1110000 00000 11 1111111110 0112334889998887664
Q ss_pred ----HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccc
Q 005138 126 ----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (712)
Q Consensus 126 ----~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~ 201 (712)
.+||+|||.++||..+ ...+-.++.++++. |.+|||++||++.+.+.++++.++.. |++...|..+++
T Consensus 148 NP~~~LLllDEP~~~LDvAQ------~~aLdrll~~~c~~-G~~vims~HDLNhTLrhA~~~wLL~r-G~l~~~G~~~eV 219 (248)
T COG4138 148 NPAGQLLLLDEPMNSLDVAQ------QSALDRLLSALCQQ-GLAIVMSSHDLNHTLRHAHRAWLLKR-GKLLASGRREEV 219 (248)
T ss_pred CccceeEEecCCCcchhHHH------HHHHHHHHHHHHhC-CcEEEEeccchhhHHHHHHHHHHHhc-CeEEeecchhhh
Confidence 7999999999999987 66677777888775 99999999999999999999999999 999999999999
Q ss_pred cCCccchhhhcccccc
Q 005138 202 HMETPLSEFFNVEVVA 217 (712)
Q Consensus 202 ~~~~~l~d~f~~~~~~ 217 (712)
+..+.+...|+..|..
T Consensus 220 lt~~vL~q~fg~~frr 235 (248)
T COG4138 220 LTPPVLAQAYGMNFRR 235 (248)
T ss_pred cChHHHHHHhccceEE
Confidence 9998999999888754
No 349
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.76 E-value=2.3e-18 Score=202.60 Aligned_cols=162 Identities=15% Similarity=0.068 Sum_probs=117.8
Q ss_pred cEEEEeeeeeec--cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC--Ce-ee
Q 005138 9 STQLIDGDGTFN--VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK--GI-WM 83 (712)
Q Consensus 9 ~I~l~~l~k~y~--~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~--gi-~~ 83 (712)
+|++.|+++.|. ..+++++++++..|+ +++|+||||||||||+++|+|+. +|++|++.... .+ .+
T Consensus 451 ~i~~~nv~~~~~~~~~il~~isl~i~~Ge------~~~IvG~nGsGKSTLl~lL~Gl~----~~~~G~i~~~~~~~i~~v 520 (659)
T TIGR00954 451 GIKFENIPLVTPNGDVLIESLSFEVPSGN------HLLICGPNGCGKSSLFRILGELW----PVYGGRLTKPAKGKLFYV 520 (659)
T ss_pred eEEEEeeEEECCCCCeeeecceEEECCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCCeEeecCCCcEEEE
Confidence 599999999993 347999999999999 99999999999999999999998 88888753221 11 11
Q ss_pred ccccCCC------ccch-------------------hccccCCCcc-----------cccchhhHHHHHHHHHHHHHH--
Q 005138 84 ARCAGIE------PCTL-------------------IMDLEGTDGR-----------ERGEDDTAFEKQSALFALAVS-- 125 (712)
Q Consensus 84 ~~~~~~~------~~~~-------------------v~d~~g~~~~-----------~r~~~~~~ferQrv~~A~Ala-- 125 (712)
.+..... +..+ .++..|+... ..+...+..||||++||+|++
T Consensus 521 ~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~ 600 (659)
T TIGR00954 521 PQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHK 600 (659)
T ss_pred CCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcC
Confidence 1111100 0000 0011111100 011234667999999999999
Q ss_pred -HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCe
Q 005138 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (712)
Q Consensus 126 -~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~ 191 (712)
+++||||||++||+.. ...+.+.+.+ .|.|+|+|||+++.+ ..||++++++..|.
T Consensus 601 p~illLDEpts~LD~~~------~~~l~~~l~~----~~~tvI~isH~~~~~-~~~d~il~l~~~g~ 656 (659)
T TIGR00954 601 PQFAILDECTSAVSVDV------EGYMYRLCRE----FGITLFSVSHRKSLW-KYHEYLLYMDGRGG 656 (659)
T ss_pred CCEEEEeCCccCCCHHH------HHHHHHHHHH----cCCEEEEEeCchHHH-HhCCEEEEEeCCCC
Confidence 9999999999999998 8888887765 289999999999876 46899888876443
No 350
>PLN03232 ABC transporter C family member; Provisional
Probab=99.76 E-value=2.3e-18 Score=218.29 Aligned_cols=176 Identities=18% Similarity=0.182 Sum_probs=129.3
Q ss_pred cEEEEeeeeeecc----ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee-
Q 005138 9 STQLIDGDGTFNV----SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW- 82 (712)
Q Consensus 9 ~I~l~~l~k~y~~----~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~- 82 (712)
.|+++|+++.|+. .+|++++++++.|+ .++|+||+|||||||+++|.|.. +|.+|....-.+ +-
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge------~vaIvG~sGSGKSTLl~lLlG~~----~~~~G~i~~~~~~Iay 683 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGS------LVAIVGGTGEGKTSLISAMLGEL----SHAETSSVVIRGSVAY 683 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcCCC------EEEEECCCCCcHHHHHHHHhCCC----cccCCCEEEecCcEEE
Confidence 5999999999952 36999999999999 99999999999999999999998 888886332222 11
Q ss_pred eccccC------CCccch------------------hccccCCC------cccccchhhHHHHHHHHHHHHHH---HHhh
Q 005138 83 MARCAG------IEPCTL------------------IMDLEGTD------GRERGEDDTAFEKQSALFALAVS---DIVL 129 (712)
Q Consensus 83 ~~~~~~------~~~~~~------------------v~d~~g~~------~~~r~~~~~~ferQrv~~A~Ala---~iLl 129 (712)
..+... .+|..+ ..|...++ -.+++...+++||||+++|||+. +++|
T Consensus 684 v~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlL 763 (1495)
T PLN03232 684 VPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYI 763 (1495)
T ss_pred EcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEE
Confidence 111110 011111 11111121 12334445678999999999999 9999
Q ss_pred hccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccccC
Q 005138 130 INMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (712)
Q Consensus 130 LDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~~ 203 (712)
|||||++||+.. .+.+++.+.+... .++|+|+|||+++.+. .+|+++++++ |++...|+.++...
T Consensus 764 LDEptSaLD~~t------~~~I~~~~l~~~l-~~kT~IlvTH~~~~l~-~aD~Ii~L~~-G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 764 FDDPLSALDAHV------AHQVFDSCMKDEL-KGKTRVLVTNQLHFLP-LMDRIILVSE-GMIKEEGTFAELSK 828 (1495)
T ss_pred EcCCccccCHHH------HHHHHHHHhhhhh-cCCEEEEEECChhhHH-hCCEEEEEeC-CEEEEecCHHHHHh
Confidence 999999999987 7777765433222 3799999999998765 4899999988 99999998877653
No 351
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.75 E-value=2.3e-18 Score=201.37 Aligned_cols=162 Identities=17% Similarity=0.129 Sum_probs=119.5
Q ss_pred ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCC---CCeeeccCCee----eccccCC-----
Q 005138 22 SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAF---KGRSQTTKGIW----MARCAGI----- 89 (712)
Q Consensus 22 ~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~---sG~~~~t~gi~----~~~~~~~----- 89 (712)
.+|+++++.+.+|+ +++|+|||||||||||++|+|.. +|. +|++...+... +.+..++
T Consensus 39 ~iL~~vs~~i~~Ge------~~aI~G~sGsGKSTLL~~L~g~~----~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~ 108 (617)
T TIGR00955 39 HLLKNVSGVAKPGE------LLAVMGSSGAGKTTLMNALAFRS----PKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDD 108 (617)
T ss_pred ccccCCEEEEeCCe------EEEEECCCCCCHHHHHHHHhCCC----CCCCcceeEEEECCEECCHHHHhhhceeecccc
Confidence 36999999999999 99999999999999999999987 553 56532211100 0001111
Q ss_pred --Cccchh----------------------------ccccCCCcc--cc-c-----chhhHHHHHHHHHHHHHH---HHh
Q 005138 90 --EPCTLI----------------------------MDLEGTDGR--ER-G-----EDDTAFEKQSALFALAVS---DIV 128 (712)
Q Consensus 90 --~~~~~v----------------------------~d~~g~~~~--~r-~-----~~~~~ferQrv~~A~Ala---~iL 128 (712)
.+...| ++..|+... .. + ......||||+.+|++++ +++
T Consensus 109 ~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vl 188 (617)
T TIGR00955 109 LFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLL 188 (617)
T ss_pred ccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEE
Confidence 111111 111122110 01 1 124566999999999999 999
Q ss_pred hhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCC-CcccccccccceecCCeEEEecCcccc
Q 005138 129 LINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKT-RTPLENLEPVLREDIQKIWDSVPKPQA 201 (712)
Q Consensus 129 lLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~-~~~~~~~~~~ll~~~G~I~~~g~~~e~ 201 (712)
++||||+|||+.. ...+++.++++.+. |+|+|+++|++. .+...+|+++++.+ |+++..|++.+.
T Consensus 189 llDEPtsgLD~~~------~~~l~~~L~~l~~~-g~tvi~~~hq~~~~i~~~~D~i~ll~~-G~~v~~G~~~~~ 254 (617)
T TIGR00955 189 FCDEPTSGLDSFM------AYSVVQVLKGLAQK-GKTIICTIHQPSSELFELFDKIILMAE-GRVAYLGSPDQA 254 (617)
T ss_pred EeeCCCcchhHHH------HHHHHHHHHHHHhC-CCEEEEEeCCCCHHHHHHhceEEEeeC-CeEEEECCHHHH
Confidence 9999999999998 99999999999764 999999999995 67778999999988 999999997654
No 352
>PLN03140 ABC transporter G family member; Provisional
Probab=99.75 E-value=3.5e-18 Score=214.56 Aligned_cols=186 Identities=15% Similarity=0.173 Sum_probs=132.3
Q ss_pred cEEEEeeeeeec--------------cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccC--CCC
Q 005138 9 STQLIDGDGTFN--------------VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD--AFK 72 (712)
Q Consensus 9 ~I~l~~l~k~y~--------------~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~--p~s 72 (712)
.+...|++.... ..+|+++++.+.+|+ +++|+||||||||||||+|+|.. + +.+
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge------l~aL~G~sGaGKTTLL~~LaG~~----~~g~~~ 936 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGV------LTALMGVSGAGKTTLMDVLAGRK----TGGYIE 936 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCe------EEEEECCCCCCHHHHHHHHcCCC----CCCccc
Confidence 478888887752 136899999999999 99999999999999999999986 4 256
Q ss_pred CeeeccCC-e---eeccccCC-------Cccchh----------------------------ccccCCCcc--ccc----
Q 005138 73 GRSQTTKG-I---WMARCAGI-------EPCTLI----------------------------MDLEGTDGR--ERG---- 107 (712)
Q Consensus 73 G~~~~t~g-i---~~~~~~~~-------~~~~~v----------------------------~d~~g~~~~--~r~---- 107 (712)
|++...+. . .+.+..++ .+...| ++..|+... ...
T Consensus 937 G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~ 1016 (1470)
T PLN03140 937 GDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPG 1016 (1470)
T ss_pred ceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCC
Confidence 76432110 0 00011110 011111 111122110 000
Q ss_pred -chhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCC-Cccccccc
Q 005138 108 -EDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKT-RTPLENLE 182 (712)
Q Consensus 108 -~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~-~~~~~~~~ 182 (712)
...+..||||+.||++|+ ++|+|||||+|||+.. ...+++.++++.+. |.|||+++|+++ .+...+|+
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~------a~~v~~~L~~l~~~-g~tVI~t~Hq~~~~i~~~~D~ 1089 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA------AAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDE 1089 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCCCHHHHHhCCE
Confidence 134567999999999999 9999999999999998 99999999999765 999999999998 46667899
Q ss_pred ccceecCCeEEEecCcccccCCccchhhhcc
Q 005138 183 PVLREDIQKIWDSVPKPQAHMETPLSEFFNV 213 (712)
Q Consensus 183 ~~ll~~~G~I~~~g~~~e~~~~~~l~d~f~~ 213 (712)
++++.+.|+++..|++.+ ....+.+||.-
T Consensus 1090 vllL~~gG~~v~~G~~~~--~~~~~~~yF~~ 1118 (1470)
T PLN03140 1090 LLLMKRGGQVIYSGPLGR--NSHKIIEYFEA 1118 (1470)
T ss_pred EEEEcCCCEEEEECCccc--ccccHHHHHHh
Confidence 998886589999998654 23455666654
No 353
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.75 E-value=1.9e-18 Score=189.20 Aligned_cols=176 Identities=17% Similarity=0.198 Sum_probs=131.3
Q ss_pred cEEEEeeeeeec---cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC---ee
Q 005138 9 STQLIDGDGTFN---VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG---IW 82 (712)
Q Consensus 9 ~I~l~~l~k~y~---~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g---i~ 82 (712)
.+.+.++...=. ...+++++|.+..|+ .++||||+|||||||.|+|.|.- +|.+|.+..++- -|
T Consensus 334 ~L~Ve~l~~~PPg~~~pil~~isF~l~~G~------~lgIIGPSgSGKSTLaR~lvG~w----~p~~G~VRLDga~l~qW 403 (580)
T COG4618 334 ALSVERLTAAPPGQKKPILKGISFALQAGE------ALGIIGPSGSGKSTLARLLVGIW----PPTSGSVRLDGADLRQW 403 (580)
T ss_pred eeeEeeeeecCCCCCCcceecceeEecCCc------eEEEECCCCccHHHHHHHHHccc----ccCCCcEEecchhhhcC
Confidence 578888876442 236899999999999 99999999999999999999999 899998654432 12
Q ss_pred ----eccccCCCccc-------h----------------------------hcccc-CC--CcccccchhhHHHHHHHHH
Q 005138 83 ----MARCAGIEPCT-------L----------------------------IMDLE-GT--DGRERGEDDTAFEKQSALF 120 (712)
Q Consensus 83 ----~~~~~~~~~~~-------~----------------------------v~d~~-g~--~~~~r~~~~~~ferQrv~~ 120 (712)
+.+.+||-+.. + ++... |. .-.+.+...+..||||+++
T Consensus 404 d~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaL 483 (580)
T COG4618 404 DREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIAL 483 (580)
T ss_pred CHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHH
Confidence 12222321110 0 00000 11 1111222334559999999
Q ss_pred HHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecC
Q 005138 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (712)
Q Consensus 121 A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~ 197 (712)
|||+- .+++||||-++||... -..+.+.+..+.++ |.|+|+|+|..+... .+|++.+|++ |++-..|+
T Consensus 484 ARAlYG~P~lvVLDEPNsNLD~~G------E~AL~~Ai~~~k~r-G~~vvviaHRPs~L~-~~Dkilvl~~-G~~~~FG~ 554 (580)
T COG4618 484 ARALYGDPFLVVLDEPNSNLDSEG------EAALAAAILAAKAR-GGTVVVIAHRPSALA-SVDKILVLQD-GRIAAFGP 554 (580)
T ss_pred HHHHcCCCcEEEecCCCCCcchhH------HHHHHHHHHHHHHc-CCEEEEEecCHHHHh-hcceeeeecC-ChHHhcCC
Confidence 99999 8999999999999998 88899999998765 999999999998765 3688888888 99999999
Q ss_pred cccccC
Q 005138 198 KPQAHM 203 (712)
Q Consensus 198 ~~e~~~ 203 (712)
.++++.
T Consensus 555 r~eVLa 560 (580)
T COG4618 555 REEVLA 560 (580)
T ss_pred HHHHHH
Confidence 887753
No 354
>PLN03130 ABC transporter C family member; Provisional
Probab=99.75 E-value=2.6e-18 Score=218.21 Aligned_cols=175 Identities=15% Similarity=0.152 Sum_probs=130.7
Q ss_pred cEEEEeeeeeec----cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCC-CeeeccCCeee
Q 005138 9 STQLIDGDGTFN----VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFK-GRSQTTKGIWM 83 (712)
Q Consensus 9 ~I~l~~l~k~y~----~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~s-G~~~~t~gi~~ 83 (712)
.|+++|+++.|+ ..+|++++++++.|+ .++|+||+|||||||+++|.|.. +|.+ |++...+.+-+
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge------~vaIvG~sGSGKSTLl~lLlG~~----~~~~GG~I~l~~~Iay 683 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGS------LVAIVGSTGEGKTSLISAMLGEL----PPRSDASVVIRGTVAY 683 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEecCCC------EEEEECCCCCCHHHHHHHHHHhh----ccCCCceEEEcCeEEE
Confidence 599999999995 236999999999999 99999999999999999999998 8999 77543332211
Q ss_pred -ccccC------CCccch------------------hccccCCC------cccccchhhHHHHHHHHHHHHHH---HHhh
Q 005138 84 -ARCAG------IEPCTL------------------IMDLEGTD------GRERGEDDTAFEKQSALFALAVS---DIVL 129 (712)
Q Consensus 84 -~~~~~------~~~~~~------------------v~d~~g~~------~~~r~~~~~~ferQrv~~A~Ala---~iLl 129 (712)
.+... .+|..+ ..|+..++ -.+++...+++||||+++|||+. +++|
T Consensus 684 v~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlL 763 (1622)
T PLN03130 684 VPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYI 763 (1622)
T ss_pred EcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence 11111 111111 11121121 12344455678999999999999 9999
Q ss_pred hccccCCCchhhhhChhhHHHHHHH-HHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccccC
Q 005138 130 INMWCHDIGREQAANKPLLKTVFQV-MMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (712)
Q Consensus 130 LDEP~~~LD~~~~a~~~l~~~v~e~-l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~~ 203 (712)
|||||++||+.. .+.+++. +..+. +++|+|+|||++.... .+|+++++++ |++...|+.++...
T Consensus 764 LDEptSALD~~~------~~~I~~~~l~~~l--~~kTvIlVTH~l~~l~-~aD~Ii~L~~-G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 764 FDDPLSALDAHV------GRQVFDKCIKDEL--RGKTRVLVTNQLHFLS-QVDRIILVHE-GMIKEEGTYEELSN 828 (1622)
T ss_pred ECCCccccCHHH------HHHHHHHHhhHHh--cCCEEEEEECCHhHHH-hCCEEEEEeC-CEEEEeCCHHHHHh
Confidence 999999999987 6677654 44443 3799999999998765 4899999988 99999999877653
No 355
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.74 E-value=2.2e-18 Score=218.16 Aligned_cols=173 Identities=15% Similarity=0.132 Sum_probs=131.7
Q ss_pred cEEEEeeeeeec---cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeee--
Q 005138 9 STQLIDGDGTFN---VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM-- 83 (712)
Q Consensus 9 ~I~l~~l~k~y~---~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~-- 83 (712)
.|++.|++.+|. ..+|++++++|.+|+ .|||+|++|||||||+++|+|+. + .+|++...+ +-+
T Consensus 1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~Ge------kvaIvGrSGsGKSTLl~lL~rl~----~-~~G~I~IdG-~di~~ 1284 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQ------RVGLLGRTGSGKSTLLSALLRLL----S-TEGEIQIDG-VSWNS 1284 (1490)
T ss_pred eEEEEEEEEEeCCCCcceeeccEEEEcCCC------EEEEECCCCCCHHHHHHHHhhhc----C-CCcEEEECC-EEccc
Confidence 599999999994 347999999999999 99999999999999999999998 4 679854322 111
Q ss_pred ------ccccCC---Cccch---------------------hccc-----------cCCCc--ccccchhhHHHHHHHHH
Q 005138 84 ------ARCAGI---EPCTL---------------------IMDL-----------EGTDG--RERGEDDTAFEKQSALF 120 (712)
Q Consensus 84 ------~~~~~~---~~~~~---------------------v~d~-----------~g~~~--~~r~~~~~~ferQrv~~ 120 (712)
+..+++ ++.++ +++. .|++. .+.+...+.+||||+++
T Consensus 1285 i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~L 1364 (1490)
T TIGR01271 1285 VTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCL 1364 (1490)
T ss_pred CCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHH
Confidence 111110 00000 0010 11111 11223345679999999
Q ss_pred HHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecC
Q 005138 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (712)
Q Consensus 121 A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~ 197 (712)
|||+. +||||||||++||+.. -..+.+.+++.++ ++|+|+|+|+++.+.. ||++++|++ |+|+..|+
T Consensus 1365 ARALLr~~~ILlLDEaTS~lD~~T------e~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-~DrIlvL~~-G~ivE~g~ 1434 (1490)
T TIGR01271 1365 ARSILSKAKILLLDEPSAHLDPVT------LQIIRKTLKQSFS--NCTVILSEHRVEALLE-CQQFLVIEG-SSVKQYDS 1434 (1490)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHH------HHHHHHHHHHHcC--CCEEEEEecCHHHHHh-CCEEEEEEC-CEEEEeCC
Confidence 99999 9999999999999998 8899999998764 7999999999987664 899999988 99999999
Q ss_pred cccccC
Q 005138 198 KPQAHM 203 (712)
Q Consensus 198 ~~e~~~ 203 (712)
+.++++
T Consensus 1435 p~~Ll~ 1440 (1490)
T TIGR01271 1435 IQKLLN 1440 (1490)
T ss_pred HHHHHc
Confidence 887764
No 356
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.74 E-value=4.5e-18 Score=193.48 Aligned_cols=169 Identities=17% Similarity=0.200 Sum_probs=123.4
Q ss_pred ccEEEEeeeeeecc--ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee---
Q 005138 8 CSTQLIDGDGTFNV--SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW--- 82 (712)
Q Consensus 8 ~~I~l~~l~k~y~~--~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~--- 82 (712)
..+++.|+++.|+. ..++++++.|..|+ .++|+||||+|||||||+|.|.. .|.+|++....++.
T Consensus 320 ~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~------riaiiG~NG~GKSTLlk~l~g~~----~~~~G~v~~g~~v~igy 389 (530)
T COG0488 320 LVLEFENVSKGYDGGRLLLKDLSFRIDRGD------RIAIVGPNGAGKSTLLKLLAGEL----GPLSGTVKVGETVKIGY 389 (530)
T ss_pred eeEEEeccccccCCCceeecCceEEecCCC------EEEEECCCCCCHHHHHHHHhhhc----ccCCceEEeCCceEEEE
Confidence 46999999999954 46899999999999 99999999999999999999988 78899866555422
Q ss_pred ecccc-CCCccchhcccc-------------------CCCcc---cccchhhHHHHHHHHHHHHHH---HHhhhccccCC
Q 005138 83 MARCA-GIEPCTLIMDLE-------------------GTDGR---ERGEDDTAFEKQSALFALAVS---DIVLINMWCHD 136 (712)
Q Consensus 83 ~~~~~-~~~~~~~v~d~~-------------------g~~~~---~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~ 136 (712)
+.+.. ...+...++|.. |+++. ......+++||-|+.+|+.+. .+|||||||+.
T Consensus 390 f~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNh 469 (530)
T COG0488 390 FDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNH 469 (530)
T ss_pred EEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCcc
Confidence 22211 111111111111 11111 112234556999999999998 99999999999
Q ss_pred CchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecC
Q 005138 137 IGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (712)
Q Consensus 137 LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~ 197 (712)
||..+ +..+-+.+... ..||||||||..++...|.+++++.+ +-.+..|.
T Consensus 470 LDi~s------~~aLe~aL~~f----~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~ 519 (530)
T COG0488 470 LDIES------LEALEEALLDF----EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGG 519 (530)
T ss_pred CCHHH------HHHHHHHHHhC----CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCC
Confidence 99997 77676666663 56999999999999998988888776 33333343
No 357
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.74 E-value=4e-18 Score=215.78 Aligned_cols=161 Identities=15% Similarity=0.157 Sum_probs=120.6
Q ss_pred cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeee-ccccC------CCccchh
Q 005138 23 GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM-ARCAG------IEPCTLI 95 (712)
Q Consensus 23 ~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~-~~~~~------~~~~~~v 95 (712)
+|++++++++.|+ +++|+|||||||||||++|.|.. +|++|++...+.+-+ ..... .++..+.
T Consensus 441 ~l~~i~l~i~~G~------~~~I~G~~GsGKSTLl~~l~G~~----~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g 510 (1490)
T TIGR01271 441 VLKNISFKLEKGQ------LLAVAGSTGSGKSSLLMMIMGEL----EPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFG 510 (1490)
T ss_pred ceeeeEEEECCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEEEEEeCCCccCCccHHHHHHhc
Confidence 6899999999999 99999999999999999999999 899998655443221 11111 1111110
Q ss_pred -----------c-------cccCCC------cccccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhH
Q 005138 96 -----------M-------DLEGTD------GRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLL 148 (712)
Q Consensus 96 -----------~-------d~~g~~------~~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~ 148 (712)
. |...++ -.+++.....+||||+++|+|+. +++|||||+++||+.. .
T Consensus 511 ~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~------~ 584 (1490)
T TIGR01271 511 LSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVT------E 584 (1490)
T ss_pred cccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH------H
Confidence 0 000000 11223345677999999999999 9999999999999998 8
Q ss_pred HHHHHH-HHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccccC
Q 005138 149 KTVFQV-MMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (712)
Q Consensus 149 ~~v~e~-l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~~ 203 (712)
+.+++. +..+. .|+|+|+|||+++.+.. ||+++++.+ |++...|+..+...
T Consensus 585 ~~i~~~~l~~~~--~~~tvilvtH~~~~~~~-ad~ii~l~~-g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 585 KEIFESCLCKLM--SNKTRILVTSKLEHLKK-ADKILLLHE-GVCYFYGTFSELQA 636 (1490)
T ss_pred HHHHHHHHHHHh--cCCeEEEEeCChHHHHh-CCEEEEEEC-CEEEEEcCHHHHHh
Confidence 889874 55654 38999999999988764 899998887 99999998776653
No 358
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.73 E-value=4.5e-18 Score=184.28 Aligned_cols=175 Identities=18% Similarity=0.201 Sum_probs=131.2
Q ss_pred cEEEEeeeeeec--cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-e----
Q 005138 9 STQLIDGDGTFN--VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-I---- 81 (712)
Q Consensus 9 ~I~l~~l~k~y~--~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i---- 81 (712)
.|++.|+++.|+ ..+|.|++|++.+|. .++|+||+|+||||+|++|+..- +..+|.+..++- +
T Consensus 537 ~i~fsnvtF~Y~p~k~vl~disF~v~pGk------tvAlVG~SGaGKSTimRlLfRff----dv~sGsI~iDgqdIrnvt 606 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPGKPVLSDISFTVQPGK------TVALVGPSGAGKSTIMRLLFRFF----DVNSGSITIDGQDIRNVT 606 (790)
T ss_pred eEEEEEeEEecCCCCceeecceEEecCCc------EEEEECCCCCchhHHHHHHHHHh----hccCceEEEcCchHHHHH
Confidence 589999999995 457999999999999 99999999999999999999987 788898533321 1
Q ss_pred --eeccccCCCc-------cchhc-------------------------------cccCCCcccccchhhHHHHHHHHHH
Q 005138 82 --WMARCAGIEP-------CTLIM-------------------------------DLEGTDGRERGEDDTAFEKQSALFA 121 (712)
Q Consensus 82 --~~~~~~~~~~-------~~~v~-------------------------------d~~g~~~~~r~~~~~~ferQrv~~A 121 (712)
.++..+|..| .+... +-..+.-.+|+-..++.|||||++|
T Consensus 607 ~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiA 686 (790)
T KOG0056|consen 607 QSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIA 686 (790)
T ss_pred HHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHH
Confidence 0111222111 11000 0011112234434455699999999
Q ss_pred HHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCc
Q 005138 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (712)
Q Consensus 122 ~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~ 198 (712)
+++. .+++|||.|++||... -+.|-..+.++++ +.|-|+|-|.++.+.. +|.+.++.+ |+|++.|..
T Consensus 687 RtiLK~P~iIlLDEATSALDT~t------ER~IQaaL~rlca--~RTtIVvAHRLSTivn-AD~ILvi~~-G~IvErG~H 756 (790)
T KOG0056|consen 687 RTILKAPSIILLDEATSALDTNT------ERAIQAALARLCA--NRTTIVVAHRLSTIVN-ADLILVISN-GRIVERGRH 756 (790)
T ss_pred HHHhcCCcEEEEcchhhhcCCcc------HHHHHHHHHHHhc--CCceEEEeeeehheec-ccEEEEEeC-CeEeecCcH
Confidence 9999 8999999999999988 8888888999985 5778888999976653 778888888 999999998
Q ss_pred ccccC
Q 005138 199 PQAHM 203 (712)
Q Consensus 199 ~e~~~ 203 (712)
++.+.
T Consensus 757 eeLl~ 761 (790)
T KOG0056|consen 757 EELLK 761 (790)
T ss_pred HHHHh
Confidence 77653
No 359
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=8.2e-18 Score=164.13 Aligned_cols=150 Identities=15% Similarity=0.146 Sum_probs=106.2
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC-Ce-----
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-GI----- 81 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~-gi----- 81 (712)
+++..+++..-+ ...+.+++|+++.|+ ++-|.||||||||||||+|+|+. .|++|++...+ ++
T Consensus 2 ~L~a~~L~~~R~e~~lf~~L~f~l~~Ge------~~~i~G~NG~GKTtLLRilaGLl----~p~~G~v~~~~~~i~~~~~ 71 (209)
T COG4133 2 MLEAENLSCERGERTLFSDLSFTLNAGE------ALQITGPNGAGKTTLLRILAGLL----RPDAGEVYWQGEPIQNVRE 71 (209)
T ss_pred cchhhhhhhccCcceeecceeEEEcCCC------EEEEECCCCCcHHHHHHHHHccc----CCCCCeEEecCCCCccchh
Confidence 456667776664 345789999999999 99999999999999999999999 99999965432 21
Q ss_pred -------eeccccCC-------CccchhccccCC---------------Ccccc--cchhhHHHHHHHHHHHHHH---HH
Q 005138 82 -------WMARCAGI-------EPCTLIMDLEGT---------------DGRER--GEDDTAFEKQSALFALAVS---DI 127 (712)
Q Consensus 82 -------~~~~~~~~-------~~~~~v~d~~g~---------------~~~~r--~~~~~~ferQrv~~A~Ala---~i 127 (712)
|+....+. +|..|..+..|. .+.+. ....+..|++|+++|+-++ ++
T Consensus 72 ~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pL 151 (209)
T COG4133 72 SYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPL 151 (209)
T ss_pred hHHHHHHHhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCc
Confidence 11122222 222222222222 11111 1123455999999999887 99
Q ss_pred hhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCC
Q 005138 128 VLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTR 175 (712)
Q Consensus 128 LlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~ 175 (712)
.|||||+++||..+ ...+-.++.....+ |-.||.+||..--
T Consensus 152 WiLDEP~taLDk~g------~a~l~~l~~~H~~~-GGiVllttHq~l~ 192 (209)
T COG4133 152 WILDEPFTALDKEG------VALLTALMAAHAAQ-GGIVLLTTHQPLP 192 (209)
T ss_pred eeecCcccccCHHH------HHHHHHHHHHHhcC-CCEEEEecCCccC
Confidence 99999999999997 66666667766654 8899999998743
No 360
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.72 E-value=9.6e-18 Score=200.51 Aligned_cols=175 Identities=17% Similarity=0.214 Sum_probs=136.3
Q ss_pred cEEEEeeeeeecc----ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC----
Q 005138 9 STQLIDGDGTFNV----SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG---- 80 (712)
Q Consensus 9 ~I~l~~l~k~y~~----~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g---- 80 (712)
.|++.|+++.|+. .++++++++++.|+ -+||+||+||||||.+-+|-... +|+.|.+..++-
T Consensus 987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~Gq------TvALVG~SGsGKSTvI~LLeRfY----dp~~G~V~IDg~dik~ 1056 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQ------TVALVGPSGSGKSTVISLLERFY----DPDAGKVKIDGVDIKD 1056 (1228)
T ss_pred EEEEeeeEeeCCCCCCchhhcCCcEEecCCC------EEEEECCCCCCHHHHHHHHHHhc----CCCCCeEEECCccccc
Confidence 4999999999952 36999999999999 99999999999999999999999 999999654321
Q ss_pred ---eeeccccCC---C----------ccchh----------------------ccc-cCC--CcccccchhhHHHHHHHH
Q 005138 81 ---IWMARCAGI---E----------PCTLI----------------------MDL-EGT--DGRERGEDDTAFEKQSAL 119 (712)
Q Consensus 81 ---i~~~~~~~~---~----------~~~~v----------------------~d~-~g~--~~~~r~~~~~~ferQrv~ 119 (712)
-|++..++. + |..+- ... .|. .-.+++...++.||||++
T Consensus 1057 lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIA 1136 (1228)
T KOG0055|consen 1057 LNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIA 1136 (1228)
T ss_pred CCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHH
Confidence 122222221 1 11111 000 121 223455556677999999
Q ss_pred HHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEec
Q 005138 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 120 ~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g 196 (712)
||||+. +||||||.|++||-++ -+.|-+.+.+.. .|.|+|+|.|.+..+.. ||.++++++ |+|++.|
T Consensus 1137 IARAilRnPkILLLDEATSALDseS------ErvVQeALd~a~--~gRT~IvIAHRLSTIqn-aD~I~Vi~~-G~VvE~G 1206 (1228)
T KOG0055|consen 1137 IARAILRNPKILLLDEATSALDSES------ERVVQEALDRAM--EGRTTIVIAHRLSTIQN-ADVIAVLKN-GKVVEQG 1206 (1228)
T ss_pred HHHHHHcCCCeeeeeccchhhhhhh------HHHHHHHHHHhh--cCCcEEEEecchhhhhc-CCEEEEEEC-CEEEecc
Confidence 999999 9999999999999998 777777888774 48999999999998874 888999988 9999999
Q ss_pred CcccccC
Q 005138 197 PKPQAHM 203 (712)
Q Consensus 197 ~~~e~~~ 203 (712)
+.++++.
T Consensus 1207 tH~~L~~ 1213 (1228)
T KOG0055|consen 1207 THDELLA 1213 (1228)
T ss_pred cHHHHHh
Confidence 9877664
No 361
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.71 E-value=1.1e-17 Score=202.19 Aligned_cols=175 Identities=13% Similarity=0.163 Sum_probs=137.8
Q ss_pred ccEEEEeeeeeeccc--cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC--ee-
Q 005138 8 CSTQLIDGDGTFNVS--GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG--IW- 82 (712)
Q Consensus 8 ~~I~l~~l~k~y~~~--~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g--i~- 82 (712)
..+.+.+++|.|+.. +++++++.|+.|+ +.|++|+|||||||++|+|.|.. +|++|+... .| +.
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~ge------cfgLLG~NGAGKtT~f~mltG~~----~~t~G~a~i-~g~~i~~ 631 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGE------CFGLLGVNGAGKTTTFKMLTGET----KPTSGEALI-KGHDITV 631 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCc------eEEEecCCCCCchhhHHHHhCCc----cCCcceEEE-ecCcccc
Confidence 568999999999643 7899999999999 99999999999999999999999 899998543 22 11
Q ss_pred ------eccccCCCccch--------------hccccCCCcccc--------------------cchhhHHHHHHHHHHH
Q 005138 83 ------MARCAGIEPCTL--------------IMDLEGTDGRER--------------------GEDDTAFEKQSALFAL 122 (712)
Q Consensus 83 ------~~~~~~~~~~~~--------------v~d~~g~~~~~r--------------------~~~~~~ferQrv~~A~ 122 (712)
..+.+|+-|..- .....|.+...- ......++|+|+.+|.
T Consensus 632 ~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~ai 711 (885)
T KOG0059|consen 632 STDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAI 711 (885)
T ss_pred ccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHH
Confidence 122344433221 111223221110 1112233999999999
Q ss_pred HHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcc
Q 005138 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (712)
Q Consensus 123 Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~ 199 (712)
|+. ++++||||++|+||.. ++.+++++.++.+. |..+|++||.++++..+|+|+.+|.+ |+++..|++.
T Consensus 712 alig~p~vi~LDEPstGmDP~a------rr~lW~ii~~~~k~-g~aiiLTSHsMeE~EaLCtR~aImv~-G~l~ciGs~q 783 (885)
T KOG0059|consen 712 ALIGDPSVILLDEPSTGLDPKA------RRHLWDIIARLRKN-GKAIILTSHSMEEAEALCTRTAIMVI-GQLRCIGSPQ 783 (885)
T ss_pred HHhcCCCEEEecCCCCCCCHHH------HHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHHhhhhheeec-CeeEEecChH
Confidence 999 9999999999999998 99999999999875 56999999999999999999999999 9999999976
Q ss_pred cc
Q 005138 200 QA 201 (712)
Q Consensus 200 e~ 201 (712)
+.
T Consensus 784 ~L 785 (885)
T KOG0059|consen 784 EL 785 (885)
T ss_pred HH
Confidence 54
No 362
>PLN03140 ABC transporter G family member; Provisional
Probab=99.70 E-value=4.2e-18 Score=213.81 Aligned_cols=168 Identities=15% Similarity=0.165 Sum_probs=124.3
Q ss_pred eeeeccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCC---CCeeeccCCeee-----cccc
Q 005138 16 DGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAF---KGRSQTTKGIWM-----ARCA 87 (712)
Q Consensus 16 ~k~y~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~---sG~~~~t~gi~~-----~~~~ 87 (712)
++.+...+|+++++.+.+|+ +++|+||||||||||||+|+|.. +|+ +|++... |..+ .+..
T Consensus 173 ~k~~~~~IL~~vs~~i~~Ge------~~~llGpnGSGKSTLLk~LaG~l----~~~~~~~G~I~~n-G~~~~~~~~~~~i 241 (1470)
T PLN03140 173 AKKTKLTILKDASGIIKPSR------MTLLLGPPSSGKTTLLLALAGKL----DPSLKVSGEITYN-GYRLNEFVPRKTS 241 (1470)
T ss_pred CCCccceeccCCeEEEeCCe------EEEEEcCCCCCHHHHHHHHhCCC----CCCCcceeEEEEC-CEechhhccccee
Confidence 45555557999999999999 99999999999999999999998 676 7874322 1100 0111
Q ss_pred CC-------Cccchh-----------------------------------------------------------ccccCC
Q 005138 88 GI-------EPCTLI-----------------------------------------------------------MDLEGT 101 (712)
Q Consensus 88 ~~-------~~~~~v-----------------------------------------------------------~d~~g~ 101 (712)
++ .+...| ++..|+
T Consensus 242 ~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL 321 (1470)
T PLN03140 242 AYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGL 321 (1470)
T ss_pred EEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCC
Confidence 10 001111 111122
Q ss_pred Cc-------ccccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEec
Q 005138 102 DG-------RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIR 171 (712)
Q Consensus 102 ~~-------~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtH 171 (712)
.. .......+.+||||+.+|++++ +++++||||+|||+.. ...+++.++++.+..|+|+|+++|
T Consensus 322 ~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t------~~~i~~~Lr~la~~~g~Tviis~H 395 (1470)
T PLN03140 322 DICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSST------TYQIVKCLQQIVHLTEATVLMSLL 395 (1470)
T ss_pred ccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHH------HHHHHHHHHHHHHhcCCEEEEEec
Confidence 11 0011123445999999999999 9999999999999998 999999999997656899999999
Q ss_pred CC-CCcccccccccceecCCeEEEecCcccc
Q 005138 172 DK-TRTPLENLEPVLREDIQKIWDSVPKPQA 201 (712)
Q Consensus 172 Dl-~~~~~~~~~~~ll~~~G~I~~~g~~~e~ 201 (712)
+. .++...+|+++++.+ |+++..|+..++
T Consensus 396 qp~~~i~~lfD~vilL~~-G~ivy~G~~~~~ 425 (1470)
T PLN03140 396 QPAPETFDLFDDIILLSE-GQIVYQGPRDHI 425 (1470)
T ss_pred CCCHHHHHHhheEEEeeC-ceEEEeCCHHHH
Confidence 97 577788999999988 999999987654
No 363
>PTZ00243 ABC transporter; Provisional
Probab=99.70 E-value=1.8e-17 Score=210.27 Aligned_cols=163 Identities=19% Similarity=0.135 Sum_probs=118.4
Q ss_pred cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeee-ccccCC------Cccchh
Q 005138 23 GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM-ARCAGI------EPCTLI 95 (712)
Q Consensus 23 ~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~-~~~~~~------~~~~~v 95 (712)
+|++++++++.|+ +++|+|||||||||||++|.|.. +|++|++...+.+-+ ...... ++..+.
T Consensus 675 iL~~isl~i~~G~------~~~IiG~nGsGKSTLL~~i~G~~----~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~ 744 (1560)
T PTZ00243 675 LLRDVSVSVPRGK------LTVVLGATGSGKSTLLQSLLSQF----EISEGRVWAERSIAYVPQQAWIMNATVRGNILFF 744 (1560)
T ss_pred eEeeeEEEECCCC------EEEEECCCCCcHHHHHHHHhcCC----CCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcC
Confidence 6899999999999 99999999999999999999998 899998644332211 111110 111000
Q ss_pred -----------cc-------cc----CCC--cccccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhH
Q 005138 96 -----------MD-------LE----GTD--GRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLL 148 (712)
Q Consensus 96 -----------~d-------~~----g~~--~~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~ 148 (712)
.+ .. |.. -.+++...+.+||||+++|+|+. +++|||||+++||+.. .
T Consensus 745 ~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~------~ 818 (1560)
T PTZ00243 745 DEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHV------G 818 (1560)
T ss_pred ChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH------H
Confidence 00 00 111 11233445667999999999999 9999999999999987 7
Q ss_pred HHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccccCC
Q 005138 149 KTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHME 204 (712)
Q Consensus 149 ~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~~~ 204 (712)
+.+++.+..... .|+|+|+|||+++.+. .||+++++++ |++...|+..+.+..
T Consensus 819 ~~i~~~~~~~~~-~~~TvIlvTH~~~~~~-~ad~ii~l~~-G~i~~~G~~~~l~~~ 871 (1560)
T PTZ00243 819 ERVVEECFLGAL-AGKTRVLATHQVHVVP-RADYVVALGD-GRVEFSGSSADFMRT 871 (1560)
T ss_pred HHHHHHHHHHhh-CCCEEEEEeCCHHHHH-hCCEEEEEEC-CEEEEecCHHHHHhC
Confidence 777764332222 3899999999998875 5899999988 999999988776543
No 364
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.70 E-value=1.7e-17 Score=208.69 Aligned_cols=166 Identities=13% Similarity=-0.031 Sum_probs=119.6
Q ss_pred cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-e-----eeccccCC-------
Q 005138 23 GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-I-----WMARCAGI------- 89 (712)
Q Consensus 23 ~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i-----~~~~~~~~------- 89 (712)
+|+++++.+..|+ +++|+||||||||||||+|+|..-.--.|.+|++...+. + ...+.+++
T Consensus 76 iL~~vs~~i~~Ge------~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~ 149 (1394)
T TIGR00956 76 ILKPMDGLIKPGE------LTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVH 149 (1394)
T ss_pred eeeCCEEEEECCE------EEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEecccccc
Confidence 6889999999999 999999999999999999999851001357787433210 0 00000110
Q ss_pred Cccchh---------------------------------ccccCCCccc-------ccchhhHHHHHHHHHHHHHH---H
Q 005138 90 EPCTLI---------------------------------MDLEGTDGRE-------RGEDDTAFEKQSALFALAVS---D 126 (712)
Q Consensus 90 ~~~~~v---------------------------------~d~~g~~~~~-------r~~~~~~ferQrv~~A~Ala---~ 126 (712)
.+...| ++..|+.... .....+..||||+.||++++ +
T Consensus 150 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~ 229 (1394)
T TIGR00956 150 FPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAK 229 (1394)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCC
Confidence 011111 1111221100 00123445999999999999 9
Q ss_pred HhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCC-CCcccccccccceecCCeEEEecCcccc
Q 005138 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDK-TRTPLENLEPVLREDIQKIWDSVPKPQA 201 (712)
Q Consensus 127 iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl-~~~~~~~~~~~ll~~~G~I~~~g~~~e~ 201 (712)
++++||||+|||+.. ...+++.++++.++.|+|+|+++|+. +.+...+|+++++.+ |+++..|++.+.
T Consensus 230 vlllDEPTsgLD~~~------~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~-G~iv~~G~~~~~ 298 (1394)
T TIGR00956 230 IQCWDNATRGLDSAT------ALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYE-GYQIYFGPADKA 298 (1394)
T ss_pred EEEEeCCCCCcCHHH------HHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeC-CeEEEECCHHHH
Confidence 999999999999998 99999999999875689999999997 577778999999988 999999987654
No 365
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.68 E-value=2.4e-17 Score=158.11 Aligned_cols=162 Identities=19% Similarity=0.226 Sum_probs=117.9
Q ss_pred ccEEEEeeeeeecc--------ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeecc-
Q 005138 8 CSTQLIDGDGTFNV--------SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT- 78 (712)
Q Consensus 8 ~~I~l~~l~k~y~~--------~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t- 78 (712)
..+.+.|++|.|.- .++++++|+++.|+ +|++=||+||||||||++|.|-. .|++|++...
T Consensus 3 ~~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGE------CvvL~G~SG~GKStllr~LYaNY----~~d~G~I~v~H 72 (235)
T COG4778 3 TPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGE------CVVLHGPSGSGKSTLLRSLYANY----LPDEGQILVRH 72 (235)
T ss_pred ceeeeecchhheEeeecCCEEeeeeeceeEEecCcc------EEEeeCCCCCcHHHHHHHHHhcc----CCCCceEEEEe
Confidence 46899999999931 35899999999999 99999999999999999999998 8999996543
Q ss_pred CCeeeccc--------------cCCC-------ccchhcccc-------CCCccc---cc------------------ch
Q 005138 79 KGIWMARC--------------AGIE-------PCTLIMDLE-------GTDGRE---RG------------------ED 109 (712)
Q Consensus 79 ~gi~~~~~--------------~~~~-------~~~~v~d~~-------g~~~~~---r~------------------~~ 109 (712)
.|-|+... +|+- +..-.+|+. |.+... +. .-
T Consensus 73 ~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaT 152 (235)
T COG4778 73 EGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPAT 152 (235)
T ss_pred CcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcc
Confidence 23443321 1110 111111211 111100 00 00
Q ss_pred hhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccce
Q 005138 110 DTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLR 186 (712)
Q Consensus 110 ~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll 186 (712)
-++.|+||+.||++++ .||+|||||+.||..+ +..+.+++.+-.. +|+.+|=+-||-+.-...|+|..-+
T Consensus 153 FSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~N------r~vVveli~e~Ka-~GaAlvGIFHDeevre~vadR~~~~ 225 (235)
T COG4778 153 FSGGEQQRVNIARGFIVDYPILLLDEPTASLDATN------RAVVVELIREAKA-RGAALVGIFHDEEVREAVADRLLDV 225 (235)
T ss_pred cCCchheehhhhhhhhccCceEEecCCcccccccc------hHHHHHHHHHHHh-cCceEEEeeccHHHHHHHhhheeec
Confidence 1122999999999999 9999999999999998 9999999988765 5999999999987656667776544
No 366
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.68 E-value=1.3e-16 Score=194.75 Aligned_cols=176 Identities=15% Similarity=0.186 Sum_probs=135.5
Q ss_pred cEEEEeeeeeec---cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-----
Q 005138 9 STQLIDGDGTFN---VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG----- 80 (712)
Q Consensus 9 ~I~l~~l~k~y~---~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g----- 80 (712)
.|+++|++.+|. +.+|++++++|.+|+ .|||+|+.|||||||+++||.+. .|.+|++..++-
T Consensus 1138 ~I~f~~~~~RYrp~lp~VLk~is~~I~p~e------KVGIVGRTGaGKSSL~~aLFRl~----e~~~G~I~IDgvdI~~i 1207 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNLPLVLKGISFTIKPGE------KVGIVGRTGAGKSSLILALFRLV----EPAEGEILIDGVDISKI 1207 (1381)
T ss_pred eEEEEEeEEEeCCCCcchhcCceEEEcCCc------eEEEeCCCCCCHHHHHHHHHHhc----CccCCeEEEcCeecccc
Confidence 599999999994 357999999999999 99999999999999999999999 889999544321
Q ss_pred ----------------eeeccccC--CCcc------------------chhccc-cCCCc--ccccchhhHHHHHHHHHH
Q 005138 81 ----------------IWMARCAG--IEPC------------------TLIMDL-EGTDG--RERGEDDTAFEKQSALFA 121 (712)
Q Consensus 81 ----------------i~~~~~~~--~~~~------------------~~v~d~-~g~~~--~~r~~~~~~ferQrv~~A 121 (712)
+.+.+.+- .+|. .++... .|++. .+.|+.-+.+|||.+++|
T Consensus 1208 gL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLA 1287 (1381)
T KOG0054|consen 1208 GLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLA 1287 (1381)
T ss_pred cHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHH
Confidence 11111110 0000 001111 12322 233444556699999999
Q ss_pred HHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCc
Q 005138 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (712)
Q Consensus 122 ~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~ 198 (712)
||+. +||+|||.|+++|+.. =..|-+.+++-|+ ++|||.+-|.++.+.. ||++++|++ |++++.++|
T Consensus 1288 RALLr~skILvLDEATAsVD~~T------D~lIQ~tIR~~F~--dcTVltIAHRl~TVmd-~DrVlVld~-G~v~EfdsP 1357 (1381)
T KOG0054|consen 1288 RALLRKSKILVLDEATASVDPET------DALIQKTIREEFK--DCTVLTIAHRLNTVMD-SDRVLVLDA-GRVVEFDSP 1357 (1381)
T ss_pred HHHhccCCEEEEecccccCChHH------HHHHHHHHHHHhc--CCeEEEEeeccchhhh-cCeEEEeeC-CeEeecCCh
Confidence 9999 9999999999999987 6667777888885 6999999999988775 899999988 999999999
Q ss_pred ccccCC
Q 005138 199 PQAHME 204 (712)
Q Consensus 199 ~e~~~~ 204 (712)
.+.+++
T Consensus 1358 ~~Ll~~ 1363 (1381)
T KOG0054|consen 1358 AELLSD 1363 (1381)
T ss_pred HHHHhC
Confidence 888754
No 367
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.68 E-value=5.9e-17 Score=165.00 Aligned_cols=159 Identities=13% Similarity=0.038 Sum_probs=103.5
Q ss_pred cEEEEeeeeeeccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeecc-------C--
Q 005138 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT-------K-- 79 (712)
Q Consensus 9 ~I~l~~l~k~y~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t-------~-- 79 (712)
.|++.|.. .|... .++.|... .++++++|+|||||||||||++|.+..+. +..+..... .
T Consensus 5 ~i~l~nf~-~y~~~--~~i~~~~~-----~~~~~~~i~G~NGsGKSTll~~i~~~l~g---~~~~~~~~~~~~~~~~~~~ 73 (213)
T cd03279 5 KLELKNFG-PFREE--QVIDFTGL-----DNNGLFLICGPTGAGKSTILDAITYALYG---KTPRYGRQENLRSVFAPGE 73 (213)
T ss_pred EEEEECCc-CcCCc--eEEeCCCC-----CccCEEEEECCCCCCHHHHHHHheeeEec---CccccccchhHHHHhcCCC
Confidence 47778877 65321 45555432 12349999999999999999999975431 222221100 0
Q ss_pred -----CeeeccccCCCccchhccccCCCc------------------ccccchhhHHHHHHHHHHHHHH-----------
Q 005138 80 -----GIWMARCAGIEPCTLIMDLEGTDG------------------RERGEDDTAFEKQSALFALAVS----------- 125 (712)
Q Consensus 80 -----gi~~~~~~~~~~~~~v~d~~g~~~------------------~~r~~~~~~ferQrv~~A~Ala----------- 125 (712)
++.+... .....+....|.+. ..........|+||+++|+|++
T Consensus 74 ~~~~v~~~f~~~---~~~~~~~r~~gl~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~ 150 (213)
T cd03279 74 DTAEVSFTFQLG---GKKYRVERSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGA 150 (213)
T ss_pred ccEEEEEEEEEC---CeEEEEEEecCCCHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCC
Confidence 0000000 00001111111111 0111223455999999999997
Q ss_pred --HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceec
Q 005138 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (712)
Q Consensus 126 --~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~ 188 (712)
+++|+|||+++||+.. ...+.+.+.++.++ +.|+|+||||++.+...+++++++.+
T Consensus 151 ~~~~lllDEp~~~lD~~~------~~~~~~~l~~~~~~-~~tii~itH~~~~~~~~~~~i~~~~~ 208 (213)
T cd03279 151 RLEALFIDEGFGTLDPEA------LEAVATALELIRTE-NRMVGVISHVEELKERIPQRLEVIKT 208 (213)
T ss_pred CCCEEEEeCCcccCCHHH------HHHHHHHHHHHHhC-CCEEEEEECchHHHHhhCcEEEEEec
Confidence 4799999999999998 88899999988654 89999999999988888888888887
No 368
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.66 E-value=1.3e-16 Score=169.96 Aligned_cols=170 Identities=17% Similarity=0.202 Sum_probs=122.4
Q ss_pred ccEEEEeeeeeecc--ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-eeec
Q 005138 8 CSTQLIDGDGTFNV--SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IWMA 84 (712)
Q Consensus 8 ~~I~l~~l~k~y~~--~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~~~ 84 (712)
..|++.|+.+.|.. -.+.+|+++|..|+ +|-|+|.||||||||++.|.|+. .|++|++...+. +.-.
T Consensus 321 ~~lelrnvrfay~~~~FhvgPiNl~ikrGe------lvFliG~NGsGKST~~~LLtGL~----~PqsG~I~ldg~pV~~e 390 (546)
T COG4615 321 KTLELRNVRFAYQDNAFHVGPINLTIKRGE------LVFLIGGNGSGKSTLAMLLTGLY----QPQSGEILLDGKPVSAE 390 (546)
T ss_pred cceeeeeeeeccCcccceecceeeEEecCc------EEEEECCCCCcHHHHHHHHhccc----CCCCCceeECCccCCCC
Confidence 36999999999943 34789999999999 99999999999999999999999 899998654432 1100
Q ss_pred ccc---C-----CCccchhccccCCCc---cc----------------------ccchhhHHHHHHHHHHHHHH---HHh
Q 005138 85 RCA---G-----IEPCTLIMDLEGTDG---RE----------------------RGEDDTAFEKQSALFALAVS---DIV 128 (712)
Q Consensus 85 ~~~---~-----~~~~~~v~d~~g~~~---~~----------------------r~~~~~~ferQrv~~A~Ala---~iL 128 (712)
... + +.+..++-+..|..+ .+ ..-+.+..||+|+++-.|+. +|+
T Consensus 391 ~ledYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Il 470 (546)
T COG4615 391 QLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDIL 470 (546)
T ss_pred CHHHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeE
Confidence 000 0 011111112222221 10 00112233999999999999 999
Q ss_pred hhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEe
Q 005138 129 LINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDS 195 (712)
Q Consensus 129 lLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~ 195 (712)
++|||.++-||.- ++.+.+.+.-+.++.|+||+.||||-.--. .+||...+.+ |+++..
T Consensus 471 v~DEWAADQDPaF------RR~FY~~lLp~LK~qGKTI~aIsHDd~YF~-~ADrll~~~~-G~~~e~ 529 (546)
T COG4615 471 VLDEWAADQDPAF------RREFYQVLLPLLKEQGKTIFAISHDDHYFI-HADRLLEMRN-GQLSEL 529 (546)
T ss_pred EeehhhccCChHH------HHHHHHHHhHHHHHhCCeEEEEecCchhhh-hHHHHHHHhc-Cceeec
Confidence 9999999999987 999999988887888999999999964322 2566666666 998764
No 369
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.66 E-value=1.7e-16 Score=184.84 Aligned_cols=174 Identities=17% Similarity=0.159 Sum_probs=122.2
Q ss_pred EEEEeeeeeec------cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCC---CCCeeeccCC
Q 005138 10 TQLIDGDGTFN------VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA---FKGRSQTTKG 80 (712)
Q Consensus 10 I~l~~l~k~y~------~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p---~sG~~~~t~g 80 (712)
+...++...-. ...|++|+..+.+|+ +.||+||+|||||||||+|+|-. .. .+|++...+.
T Consensus 26 ~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Ge------l~AimG~SGsGKtTLL~~Lagr~----~~~~~~~G~ilvNG~ 95 (613)
T KOG0061|consen 26 LSFRNLTLSSKEKSKKTKTILKGVSGTAKPGE------LLAIMGPSGSGKTTLLNALAGRL----NGGLKLSGEILLNGR 95 (613)
T ss_pred eEEEEEEEEecCCCCccceeeeCcEEEEecCe------EEEEECCCCCCHHHHHHHHhccc----cCCCcceEEEEECCc
Confidence 44555554441 346899999999999 99999999999999999999988 32 3444222210
Q ss_pred ----eeeccccC-------CCccchhcc----------------------------ccCCCc--cccc-----chhhHHH
Q 005138 81 ----IWMARCAG-------IEPCTLIMD----------------------------LEGTDG--RERG-----EDDTAFE 114 (712)
Q Consensus 81 ----i~~~~~~~-------~~~~~~v~d----------------------------~~g~~~--~~r~-----~~~~~fe 114 (712)
..+.+..+ ..+..+|.+ ..|+.. ..+. ......|
T Consensus 96 ~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGE 175 (613)
T KOG0061|consen 96 PRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGE 175 (613)
T ss_pred cCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccch
Confidence 00000011 011111111 001110 0000 1123459
Q ss_pred HHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCC-CCcccccccccceecCC
Q 005138 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDK-TRTPLENLEPVLREDIQ 190 (712)
Q Consensus 115 rQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl-~~~~~~~~~~~ll~~~G 190 (712)
|+|+.||.=+. .+|++||||+|||... ...+++++++++++ |+|||+++|.+ ..+....|+++++.. |
T Consensus 176 rkRvsia~Ell~~P~iLflDEPTSGLDS~s------A~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~-G 247 (613)
T KOG0061|consen 176 RKRVSIALELLTDPSILFLDEPTSGLDSFS------ALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSE-G 247 (613)
T ss_pred hhHHHHHHHHHcCCCEEEecCCCCCcchhh------HHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcC-C
Confidence 99999999999 8999999999999998 89999999999988 99999999999 467777899999998 9
Q ss_pred eEEEecCcccc
Q 005138 191 KIWDSVPKPQA 201 (712)
Q Consensus 191 ~I~~~g~~~e~ 201 (712)
+++..|++.+.
T Consensus 248 ~~vy~G~~~~~ 258 (613)
T KOG0061|consen 248 EVVYSGSPREL 258 (613)
T ss_pred cEEEecCHHHH
Confidence 99999997543
No 370
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2e-16 Score=170.07 Aligned_cols=176 Identities=18% Similarity=0.195 Sum_probs=132.1
Q ss_pred cEEEEeeeeeec--cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee---
Q 005138 9 STQLIDGDGTFN--VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW--- 82 (712)
Q Consensus 9 ~I~l~~l~k~y~--~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~--- 82 (712)
.+..+++++.|+ ...|++++|++..|. .++|+||+|+||||+++.|+... ++.+|.+...+. +|
T Consensus 262 ~v~F~~V~F~y~~~r~iL~~isf~i~~g~------tvAiVg~SG~gKsTI~rllfRFy----D~~sG~I~id~qdir~vt 331 (497)
T COG5265 262 AVAFINVSFAYDPRRPILNGISFTIPLGK------TVAIVGESGAGKSTILRLLFRFY----DVNSGSITIDGQDIRDVT 331 (497)
T ss_pred eEEEEEEEeeccccchhhcCccccccCcc------EEEEEeCCCCcHHHHHHHHHHHh----CCcCceEEEcchhHHHhH
Confidence 478899999995 357999999999999 99999999999999999999999 999998543322 11
Q ss_pred ---eccccCCCccchh--cc------------------------------------ccCCCcccccchhhHHHHHHHHHH
Q 005138 83 ---MARCAGIEPCTLI--MD------------------------------------LEGTDGRERGEDDTAFEKQSALFA 121 (712)
Q Consensus 83 ---~~~~~~~~~~~~v--~d------------------------------------~~g~~~~~r~~~~~~ferQrv~~A 121 (712)
+++.+|..|.-.+ .| ...+.-.+|+-.....||||+++|
T Consensus 332 q~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaia 411 (497)
T COG5265 332 QQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIA 411 (497)
T ss_pred HHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHH
Confidence 1122221111110 01 001111233333334499999999
Q ss_pred HHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCc
Q 005138 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (712)
Q Consensus 122 ~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~ 198 (712)
+++. ++|++||.|++||... -+.+...+.++. .|.|.|++-|.++.+.. +|.++++++ |+|++.|+.
T Consensus 412 r~ilk~p~il~~deatsaldt~t------e~~iq~~l~~~~--~~rttlviahrlsti~~-adeiivl~~-g~i~erg~h 481 (497)
T COG5265 412 RTILKNPPILILDEATSALDTHT------EQAIQAALREVS--AGRTTLVIAHRLSTIID-ADEIIVLDN-GRIVERGTH 481 (497)
T ss_pred HHHhcCCCEEEEehhhhHhhhhH------HHHHHHHHHHHh--CCCeEEEEeehhhhccC-CceEEEeeC-CEEEecCcH
Confidence 9999 9999999999999988 788888888886 37888899999976654 788999988 999999998
Q ss_pred ccccCC
Q 005138 199 PQAHME 204 (712)
Q Consensus 199 ~e~~~~ 204 (712)
.+++..
T Consensus 482 ~~ll~~ 487 (497)
T COG5265 482 EELLAA 487 (497)
T ss_pred HHHHHc
Confidence 777644
No 371
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.63 E-value=2.4e-16 Score=173.73 Aligned_cols=170 Identities=15% Similarity=0.126 Sum_probs=121.4
Q ss_pred cccEEEEeeeeeeccc--cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeec
Q 005138 7 CCSTQLIDGDGTFNVS--GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMA 84 (712)
Q Consensus 7 ~~~I~l~~l~k~y~~~--~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~ 84 (712)
.+.+.+.|+++.|+.. .+++++|.+..+. .|+++||||+|||||||++.|.+ .|..|.+....+..+.
T Consensus 387 ~pvi~~~nv~F~y~~~~~iy~~l~fgid~~s------rvAlVGPNG~GKsTLlKl~~gdl----~p~~G~vs~~~H~~~~ 456 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDNPMIYKKLNFGIDLDS------RVALVGPNGAGKSTLLKLITGDL----QPTIGMVSRHSHNKLP 456 (614)
T ss_pred CCeEEEeccccCCCCcchhhhhhhcccCccc------ceeEecCCCCchhhhHHHHhhcc----ccccccccccccccch
Confidence 4578999999999533 5778888888888 99999999999999999999999 8999986555443222
Q ss_pred c---ccC----C--Cccchhcc----------------ccCCCccccc---chhhHHHHHHHHHHHHHH---HHhhhccc
Q 005138 85 R---CAG----I--EPCTLIMD----------------LEGTDGRERG---EDDTAFEKQSALFALAVS---DIVLINMW 133 (712)
Q Consensus 85 ~---~~~----~--~~~~~v~d----------------~~g~~~~~r~---~~~~~ferQrv~~A~Ala---~iLlLDEP 133 (712)
+ ... + ....++++ ..|+.+.... ...++.||.||+||+.+. .+|+||||
T Consensus 457 ~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEP 536 (614)
T KOG0927|consen 457 RYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEP 536 (614)
T ss_pred hhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCC
Confidence 1 100 0 01111111 1122221111 223455999999999998 99999999
Q ss_pred cCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeE-EEecC
Q 005138 134 CHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI-WDSVP 197 (712)
Q Consensus 134 ~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I-~~~g~ 197 (712)
|++||..+ ...+-+.+.+ ...++|+||||+..+..++.++.+..+ |.+ ...|.
T Consensus 537 tnhLDi~t------id~laeaiNe----~~Ggvv~vSHDfrlI~qVaeEi~~c~~-~~~~~~~G~ 590 (614)
T KOG0927|consen 537 TNHLDIET------IDALAEAINE----FPGGVVLVSHDFRLISQVAEEIWVCEN-GTVTKWDGD 590 (614)
T ss_pred CcCCCchh------HHHHHHHHhc----cCCceeeeechhhHHHHHHHHhHhhcc-CceeecCcc
Confidence 99999987 6666665554 356899999999999999999888888 544 34454
No 372
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.63 E-value=3.4e-16 Score=157.75 Aligned_cols=143 Identities=13% Similarity=0.129 Sum_probs=94.1
Q ss_pred cccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeecc--CC-eeeccccC-----CCccchh-
Q 005138 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT--KG-IWMARCAG-----IEPCTLI- 95 (712)
Q Consensus 25 ~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t--~g-i~~~~~~~-----~~~~~~v- 95 (712)
+++++++..| +++|+|||||||||||++|.|+. .+..|..... .+ +.+.+... .....++
T Consensus 14 ~~~~l~~~~g-------~~~i~G~nGsGKStll~al~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vf 82 (197)
T cd03278 14 DKTTIPFPPG-------LTAIVGPNGSGKSNIIDAIRWVL----GEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTF 82 (197)
T ss_pred CCeeeecCCC-------cEEEECCCCCCHHHHHHHHHHHh----ccccchhhcccCHHHHhccCCCCCCCCceEEEEEEE
Confidence 5566766654 79999999999999999999997 4443321000 00 11100000 0000011
Q ss_pred ------------------ccccCCCcccccchhhHHHHHHHHHHHHHH-------HHhhhccccCCCchhhhhChhhHHH
Q 005138 96 ------------------MDLEGTDGRERGEDDTAFEKQSALFALAVS-------DIVLINMWCHDIGREQAANKPLLKT 150 (712)
Q Consensus 96 ------------------~d~~g~~~~~r~~~~~~ferQrv~~A~Ala-------~iLlLDEP~~~LD~~~~a~~~l~~~ 150 (712)
++..+. ...........|+||+++|++++ +++|+|||+++||+.. ...
T Consensus 83 q~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~------~~~ 155 (197)
T cd03278 83 DNSDGRYSIISQGDVSEIIEAPGK-KVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDAN------VER 155 (197)
T ss_pred EcCCCceeEEehhhHHHHHhCCCc-cccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHH------HHH
Confidence 111000 01112334556999999999984 6999999999999998 999
Q ss_pred HHHHHHHhhCCCCceEEEEecCCCCcccccccccceec
Q 005138 151 VFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (712)
Q Consensus 151 v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~ 188 (712)
+.+.+.++.+ +.|+|+|||+++.+. .|++++.+..
T Consensus 156 l~~~l~~~~~--~~tiIiitH~~~~~~-~~d~v~~~~~ 190 (197)
T cd03278 156 FARLLKEFSK--ETQFIVITHRKGTME-AADRLYGVTM 190 (197)
T ss_pred HHHHHHHhcc--CCEEEEEECCHHHHh-hcceEEEEEe
Confidence 9999999853 689999999998654 6888776654
No 373
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.63 E-value=9.8e-16 Score=144.40 Aligned_cols=150 Identities=17% Similarity=0.187 Sum_probs=99.7
Q ss_pred cEEEEeeeeeeccc-cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccc-
Q 005138 9 STQLIDGDGTFNVS-GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC- 86 (712)
Q Consensus 9 ~I~l~~l~k~y~~~-~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~- 86 (712)
++.++|++-..+.. .|.+++++|..|+ ||.|+||+||||||||.-+.|.+ .+. ..+++.+|+...
T Consensus 2 ~l~l~nvsl~l~g~cLLa~~n~Tia~Ge------ivtlMGPSGcGKSTLls~~~G~L----a~~---F~~~G~~~l~~~~ 68 (213)
T COG4136 2 MLCLKNVSLRLPGSCLLANVNFTIAKGE------IVTLMGPSGCGKSTLLSWMIGAL----AGQ---FSCTGELWLNEQR 68 (213)
T ss_pred ceeeeeeeecCCCceEEEeeeEEecCCc------EEEEECCCCccHHHHHHHHHhhc----ccC---cceeeEEEECCee
Confidence 57889998777543 4778999999999 99999999999999999999987 332 112222333221
Q ss_pred ----------cC-------CC-------ccchh--ccccCC---------------Cccc--ccchhhHHHHHHHHHHHH
Q 005138 87 ----------AG-------IE-------PCTLI--MDLEGT---------------DGRE--RGEDDTAFEKQSALFALA 123 (712)
Q Consensus 87 ----------~~-------~~-------~~~~v--~d~~g~---------------~~~~--r~~~~~~ferQrv~~A~A 123 (712)
+| .. +..+. .++.|- ++.- ..+..+..||-|+++-++
T Consensus 69 l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~ 148 (213)
T COG4136 69 LDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRA 148 (213)
T ss_pred ccccchhhhheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHH
Confidence 11 01 11110 111111 1000 001112339999999999
Q ss_pred HH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcc
Q 005138 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (712)
Q Consensus 124 la---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~ 177 (712)
+. +.++||||++.||..- +.+..+..-.-....|...|+||||+..++
T Consensus 149 Lla~Pk~lLLDEPFS~LD~AL------R~qfR~wVFs~~r~agiPtv~VTHD~~Dvp 199 (213)
T COG4136 149 LLAQPKALLLDEPFSRLDVAL------RDQFRQWVFSEVRAAGIPTVQVTHDLQDVP 199 (213)
T ss_pred HHhCcceeeeCCchhHHHHHH------HHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 98 9999999999999864 666666544433445999999999999888
No 374
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.62 E-value=1.2e-15 Score=159.85 Aligned_cols=81 Identities=12% Similarity=0.052 Sum_probs=70.4
Q ss_pred hhhHHHHHHHHHHHHHH------HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccccc
Q 005138 109 DDTAFEKQSALFALAVS------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE 182 (712)
Q Consensus 109 ~~~~ferQrv~~A~Ala------~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~ 182 (712)
..+..|+||+.+|++++ +++|+||||++||+.. ...+.+++.++.+. |.|+|+|+||++.+. .|++
T Consensus 169 ~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~------~~~l~~~L~~l~~~-g~tvIiitH~~~~i~-~aD~ 240 (261)
T cd03271 169 TLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHD------VKKLLEVLQRLVDK-GNTVVVIEHNLDVIK-CADW 240 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHH-hCCE
Confidence 34556999999999998 3999999999999998 99999999998764 899999999998775 5888
Q ss_pred ccce------ecCCeEEEecCc
Q 005138 183 PVLR------EDIQKIWDSVPK 198 (712)
Q Consensus 183 ~~ll------~~~G~I~~~g~~ 198 (712)
++.+ .+ |+|++.|++
T Consensus 241 ii~Lgp~~g~~~-G~iv~~Gt~ 261 (261)
T cd03271 241 IIDLGPEGGDGG-GQVVASGTP 261 (261)
T ss_pred EEEecCCcCCCC-CEEEEeCCC
Confidence 8888 45 999998864
No 375
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.59 E-value=2.8e-15 Score=147.89 Aligned_cols=171 Identities=16% Similarity=0.209 Sum_probs=126.1
Q ss_pred cEEEEeeeeeec--cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeec---------
Q 005138 9 STQLIDGDGTFN--VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT--------- 77 (712)
Q Consensus 9 ~I~l~~l~k~y~--~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~--------- 77 (712)
.|++.++.+.|. ...+.+++++++.|. ...++|.|||||||||++|.|-.. .-.|.++.
T Consensus 13 aievsgl~f~y~~~dP~~~Dfnldlp~gs------RcLlVGaNGaGKtTlLKiLsGKhm----v~~~~v~VlgrsaFhDt 82 (291)
T KOG2355|consen 13 AIEVSGLQFKYKVSDPIFFDFNLDLPAGS------RCLLVGANGAGKTTLLKILSGKHM----VGGGVVQVLGRSAFHDT 82 (291)
T ss_pred eEEEeccEEecccCCceEEEEeeccCCCc------eEEEEecCCCchhhhHHHhcCccc----ccCCeEEEcCcCccccc
Confidence 699999999994 345788888888888 899999999999999999999761 11132211
Q ss_pred ----------cCCeeeccccCC------Ccc----chhccccCCCcccccchh---------------hHHHHHHHHHHH
Q 005138 78 ----------TKGIWMARCAGI------EPC----TLIMDLEGTDGRERGEDD---------------TAFEKQSALFAL 122 (712)
Q Consensus 78 ----------t~gi~~~~~~~~------~~~----~~v~d~~g~~~~~r~~~~---------------~~ferQrv~~A~ 122 (712)
-+|-|... .+. ... -++.-+.|.++ +|++.. ++.||+||.|++
T Consensus 83 ~l~~Sgdl~YLGgeW~~~-~~~agevplq~D~sae~mifgV~g~dp-~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicM 160 (291)
T KOG2355|consen 83 SLESSGDLSYLGGEWSKT-VGIAGEVPLQGDISAEHMIFGVGGDDP-ERREKLIDILDIDLRWRMHKVSDGQRRRVQICM 160 (291)
T ss_pred cccccCceeEeccccccc-ccccccccccccccHHHHHhhccCCCh-hHhhhhhhheeccceEEEeeccccchhhhHHHH
Confidence 01222111 010 000 12233444444 333322 233999999999
Q ss_pred HHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCc
Q 005138 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (712)
Q Consensus 123 Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~ 198 (712)
.|. ++|+|||-|-+||-.. +..+++.++.-...+|.||+..||-.+-......+.+.+.. |+++...+-
T Consensus 161 GLL~PfkVLLLDEVTVDLDVlA------RadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~-Gkl~~~l~~ 232 (291)
T KOG2355|consen 161 GLLKPFKVLLLDEVTVDLDVLA------RADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKS-GKLVDNLKY 232 (291)
T ss_pred hcccceeEEEeeeeEeehHHHH------HHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecC-Ceeeecccc
Confidence 999 9999999999999988 99999999999988999999999999877777788888888 999875543
No 376
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.59 E-value=3e-15 Score=183.06 Aligned_cols=177 Identities=23% Similarity=0.247 Sum_probs=135.3
Q ss_pred ccEEEEeeeeeecc----ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeee
Q 005138 8 CSTQLIDGDGTFNV----SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM 83 (712)
Q Consensus 8 ~~I~l~~l~k~y~~----~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~ 83 (712)
..+++.|.+...+. ..|++++++++.|+ .+||+||-|||||+||.+|.|-. +..+|.....+.+-+
T Consensus 517 ~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~------lvaVvG~vGsGKSSLL~AiLGEm----~~~sG~v~v~gsiaY 586 (1381)
T KOG0054|consen 517 NAIEIKNGSFSWDSESPEPTLKDINFEIKKGQ------LVAVVGPVGSGKSSLLSAILGEM----PKLSGSVAVNGSVAY 586 (1381)
T ss_pred ceEEEeeeeEecCCCCCcccccceeEEecCCC------EEEEECCCCCCHHHHHHHHhcCc----ccccceEEEcCeEEE
Confidence 36899999998842 26999999999999 99999999999999999999987 788998655554322
Q ss_pred c-------cccCCCccc------------------hhccccCCCc------ccccchhhHHHHHHHHHHHHHH---HHhh
Q 005138 84 A-------RCAGIEPCT------------------LIMDLEGTDG------RERGEDDTAFEKQSALFALAVS---DIVL 129 (712)
Q Consensus 84 ~-------~~~~~~~~~------------------~v~d~~g~~~------~~r~~~~~~ferQrv~~A~Ala---~iLl 129 (712)
. .....+|.. +--|.+-++. .++|-..+++||||+.+|||+- |+.+
T Consensus 587 v~Q~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYL 666 (1381)
T KOG0054|consen 587 VPQQPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYL 666 (1381)
T ss_pred eccccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEE
Confidence 2 111112221 2223333332 2444445678999999999998 9999
Q ss_pred hccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccccC
Q 005138 130 INMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (712)
Q Consensus 130 LDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~~ 203 (712)
||-|++++|... .+.+++-.....- +++|+|+|||.+...+. +|.+++|++ |+|...|+.++..+
T Consensus 667 LDDplSAVDahv------g~~if~~ci~~~L-~~KT~ILVTHql~~L~~-ad~Iivl~~-G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 667 LDDPLSAVDAHV------GKHIFEECIRGLL-RGKTVILVTHQLQFLPH-ADQIIVLKD-GKIVESGTYEELLK 731 (1381)
T ss_pred EcCcchhhhHhh------hHHHHHHHHHhhh-cCCEEEEEeCchhhhhh-CCEEEEecC-CeEecccCHHHHHh
Confidence 999999999987 7777776554333 38999999998887764 889999999 99999999888763
No 377
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.58 E-value=2.3e-15 Score=155.84 Aligned_cols=71 Identities=8% Similarity=-0.086 Sum_probs=58.8
Q ss_pred hhhHHHHHHHHHHHHHH-------HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccc
Q 005138 109 DDTAFEKQSALFALAVS-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENL 181 (712)
Q Consensus 109 ~~~~ferQrv~~A~Ala-------~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~ 181 (712)
.....|+||+++|++++ +++|+||||++||+.. ...+.+.+.++.+ ++++|+++|+.+ +...|+
T Consensus 158 ~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~------~~~~~~~l~~~~~--~~~ii~~~h~~~-~~~~~d 228 (243)
T cd03272 158 QLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQY------RTAVANMIKELSD--GAQFITTTFRPE-LLEVAD 228 (243)
T ss_pred ccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHH------HHHHHHHHHHHhC--CCEEEEEecCHH-HHhhCC
Confidence 34566999999999993 7999999999999998 9999999999853 788888888855 556788
Q ss_pred cccceec
Q 005138 182 EPVLRED 188 (712)
Q Consensus 182 ~~~ll~~ 188 (712)
+++++.-
T Consensus 229 ~i~~l~~ 235 (243)
T cd03272 229 KFYGVKF 235 (243)
T ss_pred EEEEEEE
Confidence 8777654
No 378
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.54 E-value=6.6e-15 Score=150.08 Aligned_cols=71 Identities=8% Similarity=-0.039 Sum_probs=59.3
Q ss_pred hhhHHHHHHHHHHHHHH-------HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccc
Q 005138 109 DDTAFEKQSALFALAVS-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENL 181 (712)
Q Consensus 109 ~~~~ferQrv~~A~Ala-------~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~ 181 (712)
.....|+||+++|+|++ +++++|||+++||+.. ...+.+.+.++. + +.|+|++||+. .+...|+
T Consensus 127 ~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~------~~~l~~~l~~~~-~-~~~~iivs~~~-~~~~~~d 197 (212)
T cd03274 127 NLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRN------VSIVANYIKERT-K-NAQFIVISLRN-NMFELAD 197 (212)
T ss_pred hcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHH------HHHHHHHHHHHc-C-CCEEEEEECcH-HHHHhCC
Confidence 34556999999999884 6999999999999998 999999999974 3 67899999985 4556789
Q ss_pred cccceec
Q 005138 182 EPVLRED 188 (712)
Q Consensus 182 ~~~ll~~ 188 (712)
+++++..
T Consensus 198 ~v~~~~~ 204 (212)
T cd03274 198 RLVGIYK 204 (212)
T ss_pred EEEEEEe
Confidence 9887765
No 379
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.54 E-value=6.2e-15 Score=149.37 Aligned_cols=139 Identities=14% Similarity=0.137 Sum_probs=89.1
Q ss_pred EEEEEcCCCCChhHHHHHHh----ccccCccCCCCCeee-----ccCC---ee----eccccCC----Cccchhcccc-C
Q 005138 42 VVSIMGPQSSGKSTLLNHLF----GTNFREMDAFKGRSQ-----TTKG---IW----MARCAGI----EPCTLIMDLE-G 100 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~----Gl~f~~m~p~sG~~~-----~t~g---i~----~~~~~~~----~~~~~v~d~~-g 100 (712)
+++|+|||||||||||++|. |.. .|.+|... ...+ .+ +....+. .....+++.. .
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~~~l~G~~----~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~ 99 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALKYALTGEL----PPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIF 99 (204)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCC----CcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhceee
Confidence 89999999999999999995 766 56655311 0111 01 1110000 0000111111 0
Q ss_pred CCccc-------ccchhhHHHHHH------HHHHHHHH---HHhhhccccCCCchhhhhChhhHH-HHHHHHHHhhCCCC
Q 005138 101 TDGRE-------RGEDDTAFEKQS------ALFALAVS---DIVLINMWCHDIGREQAANKPLLK-TVFQVMMRLFSPRK 163 (712)
Q Consensus 101 ~~~~~-------r~~~~~~ferQr------v~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~-~v~e~l~~L~~~~g 163 (712)
.+..+ ........|+|+ +++|++++ +++|+|||+++||+.. .. .+.+.+.++.++.+
T Consensus 100 ~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~------~~~~l~~~l~~~~~~~~ 173 (204)
T cd03240 100 CHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEEN------IEESLAEIIEERKSQKN 173 (204)
T ss_pred echHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHH------HHHHHHHHHHHHHhccC
Confidence 11000 112234458996 56666766 9999999999999998 88 89999999866447
Q ss_pred ceEEEEecCCCCcccccccccceecCCe
Q 005138 164 TTLMFVIRDKTRTPLENLEPVLREDIQK 191 (712)
Q Consensus 164 ~tiL~VtHDl~~~~~~~~~~~ll~~~G~ 191 (712)
.++|+|||+++.+. .|++++.+.+.|+
T Consensus 174 ~~iiiitH~~~~~~-~~d~i~~l~~~~~ 200 (204)
T cd03240 174 FQLIVITHDEELVD-AADHIYRVEKDGR 200 (204)
T ss_pred CEEEEEEecHHHHh-hCCEEEEEeeCCC
Confidence 89999999998664 5888887776553
No 380
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.54 E-value=1.1e-14 Score=157.66 Aligned_cols=153 Identities=19% Similarity=0.155 Sum_probs=109.7
Q ss_pred ccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccc-cCCCccchhc------
Q 005138 24 IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC-AGIEPCTLIM------ 96 (712)
Q Consensus 24 L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~-~~~~~~~~v~------ 96 (712)
+.++.+++..|+. ..|+|++++||||-||||+.++|+|.+ .|++|.. ..-.+.+..+ +.-.....|.
T Consensus 352 ~g~F~L~V~~G~i-~~gEvigilGpNgiGKTTFvk~LAG~i----kPdeg~~-~~~~vSyKPQyI~~~~~gtV~~~l~~~ 425 (591)
T COG1245 352 YGDFKLEVEEGEI-YDGEVIGILGPNGIGKTTFVKLLAGVI----KPDEGSE-EDLKVSYKPQYISPDYDGTVEDLLRSA 425 (591)
T ss_pred cCceEEEecCCee-ecceEEEEECCCCcchHHHHHHHhccc----cCCCCCC-ccceEeecceeecCCCCCcHHHHHHHh
Confidence 4578888888863 578899999999999999999999999 8999961 1111111100 0000000000
Q ss_pred ---------------cccCCCc--ccccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHH
Q 005138 97 ---------------DLEGTDG--RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMM 156 (712)
Q Consensus 97 ---------------d~~g~~~--~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~ 156 (712)
....+.. .....+.+..|.||+++|.+|+ |+.+||||.+-||-++ +-.+-.+++
T Consensus 426 ~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEq------R~~vakvIR 499 (591)
T COG1245 426 IRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQ------RIIVAKVIR 499 (591)
T ss_pred hhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHH------HHHHHHHHH
Confidence 0000100 0112334566999999999999 9999999999999999 889999999
Q ss_pred HhhCCCCceEEEEecCCCCcccccccccceec
Q 005138 157 RLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (712)
Q Consensus 157 ~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~ 188 (712)
+.....++|.++|.||+-.+..++|+.++...
T Consensus 500 R~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 500 RFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred HHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 99988899999999999988877777665543
No 381
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.53 E-value=1.5e-14 Score=159.73 Aligned_cols=173 Identities=17% Similarity=0.136 Sum_probs=118.3
Q ss_pred cEEEEeeeeee-ccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCee---eccCCeeec
Q 005138 9 STQLIDGDGTF-NVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS---QTTKGIWMA 84 (712)
Q Consensus 9 ~I~l~~l~k~y-~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~---~~t~gi~~~ 84 (712)
.+.+.+++..| +...++++.++++.|+ -+||+|+|||||||+|++|.|-. .|..-+. ..+.++...
T Consensus 75 dvk~~sls~s~~g~~l~kd~~~El~~g~------rygLiG~nG~Gkst~L~~i~~~e----~P~p~~~d~y~ls~e~~ps 144 (614)
T KOG0927|consen 75 DVKIESLSLSFHGVELIKDVTLELNRGR------RYGLIGPNGSGKSTFLRAIAGRE----VPIPEHIDFYLLSREIEPS 144 (614)
T ss_pred cceeeeeeeccCCceeeeeeeEEecCCc------eEEEEcCCCCcHhHHHHHHhcCC----CCCCcccchhhhcccCCCc
Confidence 58999999999 4556899999999999 99999999999999999999987 4542221 001110000
Q ss_pred c------cc----------CC---------Cc--cch------h---cccc-------------CCCccc---ccchhhH
Q 005138 85 R------CA----------GI---------EP--CTL------I---MDLE-------------GTDGRE---RGEDDTA 112 (712)
Q Consensus 85 ~------~~----------~~---------~~--~~~------v---~d~~-------------g~~~~~---r~~~~~~ 112 (712)
. .. .+ +. ... - +|.. |..+.. ...+.+.
T Consensus 145 ~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~Sg 224 (614)
T KOG0927|consen 145 EKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSG 224 (614)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCc
Confidence 0 00 00 00 000 0 0000 000000 0011233
Q ss_pred HHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecC
Q 005138 113 FEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDI 189 (712)
Q Consensus 113 ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~ 189 (712)
+++.|+++|++|. ++|+|||||++||+.. ...+-+.+.+.- ..++|+++|+-++++..|.+++-+..
T Consensus 225 GwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA------~~wLee~L~k~d---~~~lVi~sh~QDfln~vCT~Ii~l~~- 294 (614)
T KOG0927|consen 225 GWRMRAALARALFQKPDLLLLDEPTNHLDLEA------IVWLEEYLAKYD---RIILVIVSHSQDFLNGVCTNIIHLDN- 294 (614)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCCccCCCHHH------HHHHHHHHHhcc---CceEEEEecchhhhhhHhhhhheecc-
Confidence 3999999999999 9999999999999997 777777666642 22899999999999999999998888
Q ss_pred Ce-EEEecCcccc
Q 005138 190 QK-IWDSVPKPQA 201 (712)
Q Consensus 190 G~-I~~~g~~~e~ 201 (712)
++ +...|+.+..
T Consensus 295 kkl~~y~Gnydqy 307 (614)
T KOG0927|consen 295 KKLIYYEGNYDQY 307 (614)
T ss_pred cceeeecCCHHHH
Confidence 77 6677876553
No 382
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.52 E-value=1.9e-14 Score=145.22 Aligned_cols=142 Identities=12% Similarity=0.040 Sum_probs=94.0
Q ss_pred ccccccccccccccccccEEEEEcCCCCChhHHHHHHh--------ccccCccCCCCCeeeccCCeeeccccCCCccchh
Q 005138 24 IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLF--------GTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLI 95 (712)
Q Consensus 24 L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~--------Gl~f~~m~p~sG~~~~t~gi~~~~~~~~~~~~~v 95 (712)
+.++++++..|+ ++++|.|||||||||||++|. |.. -|..+. .. .++.+..+
T Consensus 17 ~~~~~~~i~~~~-----~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~----vp~~~~------~~----~~~~~~~~- 76 (200)
T cd03280 17 VVPLDIQLGENK-----RVLVITGPNAGGKTVTLKTLGLLTLMAQSGLP----IPAAEG------SS----LPVFENIF- 76 (200)
T ss_pred eEcceEEECCCc-----eEEEEECCCCCChHHHHHHHHHHHHHHHcCCC----cccccc------cc----CcCccEEE-
Confidence 356777877773 279999999999999999998 433 122110 00 01101110
Q ss_pred ccccCCCc--ccccchhhHHHHHHHHHHHHHH--HHhhhccccCCCchhhhhChhhHHHHHH-HHHHhhCCCCceEEEEe
Q 005138 96 MDLEGTDG--RERGEDDTAFEKQSALFALAVS--DIVLINMWCHDIGREQAANKPLLKTVFQ-VMMRLFSPRKTTLMFVI 170 (712)
Q Consensus 96 ~d~~g~~~--~~r~~~~~~ferQrv~~A~Ala--~iLlLDEP~~~LD~~~~a~~~l~~~v~e-~l~~L~~~~g~tiL~Vt 170 (712)
...+... ..........|+|++.++.++. +++++|||++++|+.. ...+.. ++..+.+ .|.++|++|
T Consensus 77 -~~lg~~~~l~~~~s~fs~g~~~~~~i~~~~~~p~llllDEp~~glD~~~------~~~i~~~~l~~l~~-~~~~vi~~t 148 (200)
T cd03280 77 -ADIGDEQSIEQSLSTFSSHMKNIARILQHADPDSLVLLDELGSGTDPVE------GAALAIAILEELLE-RGALVIATT 148 (200)
T ss_pred -EecCchhhhhcCcchHHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHH------HHHHHHHHHHHHHh-cCCEEEEEC
Confidence 1111110 0111223445888888887766 9999999999999987 777754 5666654 489999999
Q ss_pred cCCCCcccccccccceecCCeEEEe
Q 005138 171 RDKTRTPLENLEPVLREDIQKIWDS 195 (712)
Q Consensus 171 HDl~~~~~~~~~~~ll~~~G~I~~~ 195 (712)
|+.+ ....++++..+.+ |++..+
T Consensus 149 H~~~-l~~~~d~~~~l~~-g~l~~~ 171 (200)
T cd03280 149 HYGE-LKAYAYKREGVEN-ASMEFD 171 (200)
T ss_pred CHHH-HHHHHhcCCCeEE-EEEEEe
Confidence 9854 4567889888888 999766
No 383
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.51 E-value=9.5e-15 Score=144.44 Aligned_cols=181 Identities=15% Similarity=0.184 Sum_probs=125.2
Q ss_pred ccEEEEeeeeeec-----cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee
Q 005138 8 CSTQLIDGDGTFN-----VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW 82 (712)
Q Consensus 8 ~~I~l~~l~k~y~-----~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~ 82 (712)
+.+.+.|++-.|. .+++++++++++.|+ |-|++|.+|||||-..+.|+|..-+.-..+..+... ..+.
T Consensus 2 ~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGE------i~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf-~~id 74 (330)
T COG4170 2 PLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGE------IRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRF-DDID 74 (330)
T ss_pred CcccccceEEEEecCCCceEeeeeeeeeeccce------eeeeeccCCCchhHHHHHHhcccccceEEEhhhccc-ccch
Confidence 4577788888773 246899999999999 999999999999999999999872111111111000 0000
Q ss_pred e--------ccccCCCccchh------ccc------------c--------------------------CCCcccc----
Q 005138 83 M--------ARCAGIEPCTLI------MDL------------E--------------------------GTDGRER---- 106 (712)
Q Consensus 83 ~--------~~~~~~~~~~~v------~d~------------~--------------------------g~~~~~r---- 106 (712)
+ ++.+|.+-.+.+ +|. . |......
T Consensus 75 LL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~S 154 (330)
T COG4170 75 LLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRS 154 (330)
T ss_pred hhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHh
Confidence 0 001111111111 110 0 0000000
Q ss_pred -cchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccccc
Q 005138 107 -GEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE 182 (712)
Q Consensus 107 -~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~ 182 (712)
..+....|-|+|++|+|++ .+||.||||+++++.. ..++|.++.++.+..|+||++++||+..+...||+
T Consensus 155 YP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~T------q~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~ 228 (330)
T COG4170 155 YPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTT------QAQIFRLLSRLNQNSNTTILLISHDLQMISQWADK 228 (330)
T ss_pred CcchhccCcceeeeeehhhccCCceEeccCCCcccCccH------HHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhh
Confidence 0001122889999999999 9999999999999998 99999999999998999999999999999999999
Q ss_pred ccceecCCeEEEecCccccc
Q 005138 183 PVLREDIQKIWDSVPKPQAH 202 (712)
Q Consensus 183 ~~ll~~~G~I~~~g~~~e~~ 202 (712)
+.++-- |.-+.+++.+++.
T Consensus 229 i~VlYC-GQ~~ESa~~e~l~ 247 (330)
T COG4170 229 INVLYC-GQTVESAPSEELV 247 (330)
T ss_pred eEEEEe-cccccccchhHHh
Confidence 999988 8888887766554
No 384
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=4e-14 Score=152.05 Aligned_cols=162 Identities=18% Similarity=0.236 Sum_probs=111.7
Q ss_pred cccEEEEeeeeeecc--ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC---e
Q 005138 7 CCSTQLIDGDGTFNV--SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG---I 81 (712)
Q Consensus 7 ~~~I~l~~l~k~y~~--~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g---i 81 (712)
++.+-+.|+++.|.. ..+..++|-|.... .|||+||||.||||||++|.|-+ +|..|....... -
T Consensus 584 PPvLGlH~VtFgy~gqkpLFkkldFGiDmdS------RiaIVGPNGVGKSTlLkLL~Gkl----~P~~GE~RKnhrL~iG 653 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYPGQKPLFKKLDFGIDMDS------RIAIVGPNGVGKSTLLKLLIGKL----DPNDGELRKNHRLRIG 653 (807)
T ss_pred CCeeecccccccCCCCCchhhcccccccccc------eeEEECCCCccHHHHHHHHhcCC----CCCcchhhccceeeee
Confidence 457889999999942 24677788887777 89999999999999999999999 899998543332 2
Q ss_pred eeccccC-----C-Cccchhcccc--------------CCCccc---ccchhhHHHHHHHHHH-HHHH--HHhhhccccC
Q 005138 82 WMARCAG-----I-EPCTLIMDLE--------------GTDGRE---RGEDDTAFEKQSALFA-LAVS--DIVLINMWCH 135 (712)
Q Consensus 82 ~~~~~~~-----~-~~~~~v~d~~--------------g~~~~~---r~~~~~~ferQrv~~A-~Ala--~iLlLDEP~~ 135 (712)
|+....+ . .+.-++.... |+.+.. ...+.+..|+-||+|| +|+. |||||||||+
T Consensus 654 ~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTN 733 (807)
T KOG0066|consen 654 WFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTN 733 (807)
T ss_pred chhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCC
Confidence 3332211 0 1111111111 111110 1123445599999999 4554 9999999999
Q ss_pred CCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceec
Q 005138 136 DIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (712)
Q Consensus 136 ~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~ 188 (712)
+||.++ ...+-+.+.+. ...|||||||-..+....+..+++.+
T Consensus 734 NLDIES------IDALaEAIney----~GgVi~VsHDeRLi~eT~C~LwVvE~ 776 (807)
T KOG0066|consen 734 NLDIES------IDALAEAINEY----NGGVIMVSHDERLIVETDCNLWVVEN 776 (807)
T ss_pred Ccchhh------HHHHHHHHHhc----cCcEEEEecccceeeecCceEEEEcc
Confidence 999998 77777777765 55799999998877655555566655
No 385
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.48 E-value=6.9e-14 Score=141.14 Aligned_cols=73 Identities=5% Similarity=-0.041 Sum_probs=60.9
Q ss_pred hhhHHHHHHHHHHHHH----H---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCC--CCceEEEEecCCCCcccc
Q 005138 109 DDTAFEKQSALFALAV----S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP--RKTTLMFVIRDKTRTPLE 179 (712)
Q Consensus 109 ~~~~ferQrv~~A~Al----a---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~--~g~tiL~VtHDl~~~~~~ 179 (712)
.....|+|++++|+|+ + +++|+|||++++|+.. ...+.+.+.++..+ .+.|||+++|+++.+...
T Consensus 109 ~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~------~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~ 182 (198)
T cd03276 109 TLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVN------RKISTDLLVKEAKKQPGRQFIFITPQDISGLASS 182 (198)
T ss_pred ccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHH------HHHHHHHHHHHHhcCCCcEEEEEECCcccccccc
Confidence 3455699999999988 3 9999999999999998 89999999887653 246899999999988764
Q ss_pred cccccceec
Q 005138 180 NLEPVLRED 188 (712)
Q Consensus 180 ~~~~~ll~~ 188 (712)
|++.++..
T Consensus 183 -d~v~~~~~ 190 (198)
T cd03276 183 -DDVKVFRM 190 (198)
T ss_pred -cceeEEEe
Confidence 77777765
No 386
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.45 E-value=8.9e-14 Score=140.46 Aligned_cols=149 Identities=13% Similarity=0.049 Sum_probs=88.1
Q ss_pred ccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccccCCCccc-hhccccCCCcc
Q 005138 26 HFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCT-LIMDLEGTDGR 104 (712)
Q Consensus 26 ~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~~~~~~~~-~v~d~~g~~~~ 104 (712)
..++++..|+ +++|+|||||||||||++|.+..+ .+..|...+.... ..++.... ..+.... ..
T Consensus 21 ~~~~~l~~~~------~~~l~G~Ng~GKStll~~i~~~~~---~~~~g~~~~~~~~----~i~~~dqi~~~~~~~d--~i 85 (202)
T cd03243 21 PNDINLGSGR------LLLITGPNMGGKSTYLRSIGLAVL---LAQIGCFVPAESA----SIPLVDRIFTRIGAED--SI 85 (202)
T ss_pred eeeEEEcCCe------EEEEECCCCCccHHHHHHHHHHHH---HHHcCCCcccccc----ccCCcCEEEEEecCcc--cc
Confidence 3444555566 999999999999999999996542 2233432211110 01111110 0011110 01
Q ss_pred cccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHH-HHHhhCCCCceEEEEecCCCCccccc
Q 005138 105 ERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQV-MMRLFSPRKTTLMFVIRDKTRTPLEN 180 (712)
Q Consensus 105 ~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~-l~~L~~~~g~tiL~VtHDl~~~~~~~ 180 (712)
...-.....+.+++..+.+.+ +++|+|||++++|+.. ...+... +..+.+ .+.++|++||+.+.+. .+
T Consensus 86 ~~~~s~~~~e~~~l~~i~~~~~~~~llllDEp~~gld~~~------~~~l~~~ll~~l~~-~~~~vi~~tH~~~~~~-~~ 157 (202)
T cd03243 86 SDGRSTFMAELLELKEILSLATPRSLVLIDELGRGTSTAE------GLAIAYAVLEHLLE-KGCRTLFATHFHELAD-LP 157 (202)
T ss_pred cCCceeHHHHHHHHHHHHHhccCCeEEEEecCCCCCCHHH------HHHHHHHHHHHHHh-cCCeEEEECChHHHHH-Hh
Confidence 111111233555566665555 9999999999999976 5555443 444443 4899999999987665 46
Q ss_pred ccccceecCCeEEEecCc
Q 005138 181 LEPVLREDIQKIWDSVPK 198 (712)
Q Consensus 181 ~~~~ll~~~G~I~~~g~~ 198 (712)
+++..+.. |++...+..
T Consensus 158 ~~~~~l~~-~~~~~~~~~ 174 (202)
T cd03243 158 EQVPGVKN-LHMEELITT 174 (202)
T ss_pred hcCCCeEE-EEEEEEecC
Confidence 66677777 788766654
No 387
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.45 E-value=2.2e-13 Score=152.39 Aligned_cols=172 Identities=14% Similarity=0.199 Sum_probs=126.2
Q ss_pred ccEEEEeeeeeeccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC--------
Q 005138 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------- 79 (712)
Q Consensus 8 ~~I~l~~l~k~y~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~-------- 79 (712)
+.+++.+++..- .+++++|++..|| |+||.|-=|||+|=|+++|||.. ++.+|++...+
T Consensus 262 ~~l~v~~l~~~~---~~~dvSf~vr~GE------IlGiaGLvGaGRTEl~~~lfG~~----~~~~G~i~l~G~~v~~~sp 328 (500)
T COG1129 262 PVLEVRNLSGGG---KVRDVSFTVRAGE------ILGIAGLVGAGRTELARALFGAR----PASSGEILLDGKPVRIRSP 328 (500)
T ss_pred cEEEEecCCCCC---ceeCceeEEeCCc------EEEEeccccCCHHHHHHHHhCCC----cCCCceEEECCEEccCCCH
Confidence 356777776542 3689999999999 99999999999999999999988 77888843222
Q ss_pred ------Ceee-c---cccCC-------Cccchh-ccc-cC---CCc-cc--------------------ccchhhHHHHH
Q 005138 80 ------GIWM-A---RCAGI-------EPCTLI-MDL-EG---TDG-RE--------------------RGEDDTAFEKQ 116 (712)
Q Consensus 80 ------gi~~-~---~~~~~-------~~~~~v-~d~-~g---~~~-~~--------------------r~~~~~~ferQ 116 (712)
|+-+ . +..|. .|..+. ++- .+ .+. .+ .....+..-+|
T Consensus 329 ~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQ 408 (500)
T COG1129 329 RDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQ 408 (500)
T ss_pred HHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhh
Confidence 1111 0 00010 111111 110 00 000 00 00111223899
Q ss_pred HHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEE
Q 005138 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (712)
Q Consensus 117 rv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~ 193 (712)
+|.||+.++ ++|||||||.|+|-.. ..+|++++.++.++ |++||++|-++.++...|||+++|.+ |+|+
T Consensus 409 KVvlarwL~~~p~vLilDEPTRGIDVGA------K~eIy~li~~lA~~-G~ail~iSSElpEll~~~DRIlVm~~-Gri~ 480 (500)
T COG1129 409 KVVLARWLATDPKVLILDEPTRGIDVGA------KAEIYRLIRELAAE-GKAILMISSELPELLGLSDRILVMRE-GRIV 480 (500)
T ss_pred hHHHHHHHhcCCCEEEECCCCcCcccch------HHHHHHHHHHHHHC-CCEEEEEeCChHHHHhhCCEEEEEEC-CEEE
Confidence 999999999 9999999999999988 99999999999986 99999999999999999999999999 9999
Q ss_pred EecCccc
Q 005138 194 DSVPKPQ 200 (712)
Q Consensus 194 ~~g~~~e 200 (712)
...+..+
T Consensus 481 ~e~~~~~ 487 (500)
T COG1129 481 GELDREE 487 (500)
T ss_pred EEecccc
Confidence 8777655
No 388
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.44 E-value=1.2e-13 Score=144.07 Aligned_cols=74 Identities=12% Similarity=0.008 Sum_probs=62.5
Q ss_pred hhHHHHHHHHHHHHHH-------HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccccc
Q 005138 110 DTAFEKQSALFALAVS-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE 182 (712)
Q Consensus 110 ~~~ferQrv~~A~Ala-------~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~ 182 (712)
....|+|++++|++++ +++|+|||+++||+.. ...+.+.+.++.++ |.++|+|||+.+.. ..||+
T Consensus 156 LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~------~~~l~~~i~~~~~~-g~~vi~isH~~~~~-~~~d~ 227 (247)
T cd03275 156 LSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTN------VGKVASYIREQAGP-NFQFIVISLKEEFF-SKADA 227 (247)
T ss_pred cCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHH------HHHHHHHHHHhccC-CcEEEEEECCHHHH-hhCCe
Confidence 3455999999999995 6999999999999998 99999999998754 89999999997654 56899
Q ss_pred ccceecCCe
Q 005138 183 PVLREDIQK 191 (712)
Q Consensus 183 ~~ll~~~G~ 191 (712)
++++..++.
T Consensus 228 i~~~~~~~~ 236 (247)
T cd03275 228 LVGVYRDQE 236 (247)
T ss_pred EEEEEecCC
Confidence 887776443
No 389
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.44 E-value=1.6e-13 Score=143.29 Aligned_cols=69 Identities=4% Similarity=0.003 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHHHHHH-------HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccccc
Q 005138 110 DTAFEKQSALFALAVS-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE 182 (712)
Q Consensus 110 ~~~ferQrv~~A~Ala-------~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~ 182 (712)
....|+||+++|++++ +++|+||||++||+.. ...+++.+.++. + |.++|++||+.+. ...||+
T Consensus 167 lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~------~~~~~~~l~~~~-~-g~~ii~iSH~~~~-~~~~d~ 237 (251)
T cd03273 167 LSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSH------TQNIGRMIKTHF-K-GSQFIVVSLKEGM-FNNANV 237 (251)
T ss_pred cCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHH------HHHHHHHHHHHc-C-CCEEEEEECCHHH-HHhCCE
Confidence 3455999999999884 7999999999999998 999999999984 3 8899999999544 445777
Q ss_pred cccee
Q 005138 183 PVLRE 187 (712)
Q Consensus 183 ~~ll~ 187 (712)
++-+.
T Consensus 238 v~~~~ 242 (251)
T cd03273 238 LFRTR 242 (251)
T ss_pred EEEEE
Confidence 65443
No 390
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.44 E-value=2.2e-14 Score=135.04 Aligned_cols=101 Identities=27% Similarity=0.317 Sum_probs=68.6
Q ss_pred ccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeee--------ccccCC------
Q 005138 24 IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM--------ARCAGI------ 89 (712)
Q Consensus 24 L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~--------~~~~~~------ 89 (712)
|+++++++..|+ +++|+|+||||||||+++|+|.. +|++|++...+ ..+ ...+++
T Consensus 1 L~~v~~~i~~g~------~~~i~G~nGsGKStLl~~l~g~~----~~~~G~i~~~~-~~~~~~~~~~~~~~i~~~~~~~~ 69 (137)
T PF00005_consen 1 LKNVSLEIKPGE------IVAIVGPNGSGKSTLLKALAGLL----PPDSGSILING-KDISDIDIEELRRRIGYVPQDPQ 69 (137)
T ss_dssp EEEEEEEEETTS------EEEEEESTTSSHHHHHHHHTTSS----HESEEEEEETT-EEGTTSHHHHHHHTEEEEESSHC
T ss_pred CCceEEEEcCCC------EEEEEccCCCccccceeeecccc----ccccccccccc-ccccccccccccccccccccccc
Confidence 578999999999 99999999999999999999999 88889853331 111 001110
Q ss_pred -Cccchh------------ccccCCCc------ccccchhhHHHHHHHHHHHHHH---HHhhhccccC
Q 005138 90 -EPCTLI------------MDLEGTDG------RERGEDDTAFEKQSALFALAVS---DIVLINMWCH 135 (712)
Q Consensus 90 -~~~~~v------------~d~~g~~~------~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~ 135 (712)
.+...+ ++..+... .......+..|+||++||+|++ +++|+||||+
T Consensus 70 ~~~~~tv~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 70 LFPGLTVRENESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHTTSBHHHHHHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccccccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 011101 11111111 1112445677999999999999 9999999986
No 391
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.43 E-value=1.8e-13 Score=171.66 Aligned_cols=84 Identities=10% Similarity=-0.009 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHHHH------HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccccccc
Q 005138 111 TAFEKQSALFALAVS------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPV 184 (712)
Q Consensus 111 ~~ferQrv~~A~Ala------~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ 184 (712)
+..|+||+.+|++++ +++||||||++||+.. .+.+++++.++.+. |.|||+|+|+++.+ ..+|+++
T Consensus 811 SGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~------~~~Ll~lL~~L~~~-G~TVIiIsHdl~~i-~~aDrVi 882 (1809)
T PRK00635 811 SGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHD------IKALIYVLQSLTHQ-GHTVVIIEHNMHVV-KVADYVL 882 (1809)
T ss_pred CHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHhc-CCEEEEEeCCHHHH-HhCCEEE
Confidence 344999999999995 7999999999999999 99999999999765 99999999999987 6789998
Q ss_pred cee-----cCCeEEEecCccccc
Q 005138 185 LRE-----DIQKIWDSVPKPQAH 202 (712)
Q Consensus 185 ll~-----~~G~I~~~g~~~e~~ 202 (712)
+|. ..|+++..|+++++.
T Consensus 883 ~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 883 ELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred EEccCCCCCCCEEEEeCCHHHHH
Confidence 885 238999999887654
No 392
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.43 E-value=4.8e-13 Score=160.99 Aligned_cols=82 Identities=13% Similarity=0.086 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHHHH------HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccccccc
Q 005138 111 TAFEKQSALFALAVS------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPV 184 (712)
Q Consensus 111 ~~ferQrv~~A~Ala------~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ 184 (712)
+..|+||+.||++++ +++||||||+|||+.. ...+.+++.++.++ |.|||+++|+++.+. .|++++
T Consensus 830 SgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~------~~~L~~~L~~l~~~-G~TVIvi~H~~~~i~-~aD~ii 901 (924)
T TIGR00630 830 SGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDD------IKKLLEVLQRLVDQ-GNTVVVIEHNLDVIK-TADYII 901 (924)
T ss_pred CHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHH-hCCEEE
Confidence 445999999999998 5999999999999998 99999999999764 999999999998775 588888
Q ss_pred cee-----cCCeEEEecCccc
Q 005138 185 LRE-----DIQKIWDSVPKPQ 200 (712)
Q Consensus 185 ll~-----~~G~I~~~g~~~e 200 (712)
.+. +.|+|+..|++.+
T Consensus 902 ~Lgp~~G~~gG~iv~~G~~~~ 922 (924)
T TIGR00630 902 DLGPEGGDGGGTIVASGTPEE 922 (924)
T ss_pred EecCCccCCCCEEEEeCCHHH
Confidence 883 3399999998654
No 393
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.42 E-value=6.8e-14 Score=167.93 Aligned_cols=173 Identities=16% Similarity=0.178 Sum_probs=118.1
Q ss_pred cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC----eeeccccCCC-------c
Q 005138 23 GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG----IWMARCAGIE-------P 91 (712)
Q Consensus 23 ~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g----i~~~~~~~~~-------~ 91 (712)
.|++|+=-+.+|. .+||+|+||||||||||+|+|-. +|-..+|.+...+- ..+++..|+- +
T Consensus 806 LL~~V~G~~kPG~------LTALMG~SGAGKTTLLdvLA~R~--t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~ 877 (1391)
T KOG0065|consen 806 LLNNVSGAFKPGV------LTALMGESGAGKTTLLDVLAGRK--TGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSP 877 (1391)
T ss_pred hhhcCceEecCCc------eeehhcCCCCchHHHHHHHhcCc--ccceEEeEEEECCeeCchhhhccccceeecccccCc
Confidence 4777777777887 99999999999999999999965 22223343221110 1112222210 0
Q ss_pred cch----------------------------hccccCCCcc------cccchhhHHHHHHHHHHHHHH----HHhhhccc
Q 005138 92 CTL----------------------------IMDLEGTDGR------ERGEDDTAFEKQSALFALAVS----DIVLINMW 133 (712)
Q Consensus 92 ~~~----------------------------v~d~~g~~~~------~r~~~~~~ferQrv~~A~Ala----~iLlLDEP 133 (712)
... |++..++..- ..+.....-||+|+.||-=|+ .+|+||||
T Consensus 878 ~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEP 957 (1391)
T KOG0065|consen 878 ELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEP 957 (1391)
T ss_pred ccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCC
Confidence 111 1111111100 000112233999999998777 68999999
Q ss_pred cCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCC-CcccccccccceecCCeEEEecCcccccCCccchhhhc
Q 005138 134 CHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKT-RTPLENLEPVLREDIQKIWDSVPKPQAHMETPLSEFFN 212 (712)
Q Consensus 134 ~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~-~~~~~~~~~~ll~~~G~I~~~g~~~e~~~~~~l~d~f~ 212 (712)
|+|||-.. .-.|++.++++... |.|||.++|.++ .+.+..|+.++|+..|+.+..|+..+.. ..+-+||.
T Consensus 958 TSGLDsqa------A~~i~~~lrkla~t-GqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s--~~li~YFe 1028 (1391)
T KOG0065|consen 958 TSGLDSQA------AAIVMRFLRKLADT-GQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENS--SKLIEYFE 1028 (1391)
T ss_pred CCCccHHH------HHHHHHHHHHHHhc-CCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccccc--HHHHHHHH
Confidence 99999998 88999999999874 999999999996 4566679999999999999999987643 34555665
No 394
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=2e-13 Score=150.26 Aligned_cols=167 Identities=14% Similarity=0.061 Sum_probs=106.1
Q ss_pred cEEEEeeeeeecc-ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccc---cCccCCCCCeeec------c
Q 005138 9 STQLIDGDGTFNV-SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN---FREMDAFKGRSQT------T 78 (712)
Q Consensus 9 ~I~l~~l~k~y~~-~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~---f~~m~p~sG~~~~------t 78 (712)
-|.+.+.+..|+. ..|.+-++++..|. .+||+|+||+|||||||+|.... |.|=+...|.... .
T Consensus 80 Di~~~~fdLa~G~k~LL~~a~L~L~~Gr------RYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~ 153 (582)
T KOG0062|consen 80 DIHIDNFDLAYGGKILLNKANLTLSRGR------RYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLE 153 (582)
T ss_pred ceeeeeeeeeecchhhhcCCceeeeccc------ccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhh
Confidence 4778888888864 35888999999888 99999999999999999999843 2211111111000 0
Q ss_pred CCeeeccccCCC----cc------ch-hccccCCCccccc---chhhHHHHHHHHHHHHHH---HHhhhccccCCCchhh
Q 005138 79 KGIWMARCAGIE----PC------TL-IMDLEGTDGRERG---EDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQ 141 (712)
Q Consensus 79 ~gi~~~~~~~~~----~~------~~-v~d~~g~~~~~r~---~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~ 141 (712)
...+.-.-...+ .. .- ++--.|..+.... ...++.=|.|+++|+|+. |+|||||||+.||..+
T Consensus 154 ~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~a 233 (582)
T KOG0062|consen 154 SDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVA 233 (582)
T ss_pred ccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHH
Confidence 000000000000 00 00 0011122211111 112333688999999998 9999999999999987
Q ss_pred hhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeE
Q 005138 142 AANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (712)
Q Consensus 142 ~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I 192 (712)
...+-+.+.. .+.|+|+||||-++....|.+++-+++ -++
T Consensus 234 ------v~WLe~yL~t----~~~T~liVSHDr~FLn~V~tdIIH~~~-~kL 273 (582)
T KOG0062|consen 234 ------VAWLENYLQT----WKITSLIVSHDRNFLNTVCTDIIHLEN-LKL 273 (582)
T ss_pred ------HHHHHHHHhh----CCceEEEEeccHHHHHHHHHHHHHHhh-hhh
Confidence 6666666555 368999999999998888888776666 444
No 395
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.39 E-value=5.8e-13 Score=160.58 Aligned_cols=85 Identities=12% Similarity=0.072 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHHHHH------HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccccccc
Q 005138 111 TAFEKQSALFALAVS------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPV 184 (712)
Q Consensus 111 ~~ferQrv~~A~Ala------~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ 184 (712)
+..|+||+.+|++++ +++|||||++|||+.. ...+++++.++.+. |.|||+|+|+++.+. .|++++
T Consensus 832 SgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~------~~~L~~~L~~l~~~-G~TVIiitH~~~~i~-~aD~ii 903 (943)
T PRK00349 832 SGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFED------IRKLLEVLHRLVDK-GNTVVVIEHNLDVIK-TADWII 903 (943)
T ss_pred CHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEecCHHHHH-hCCEEE
Confidence 455999999999998 4999999999999998 99999999998754 899999999998875 588888
Q ss_pred cee-----cCCeEEEecCcccccC
Q 005138 185 LRE-----DIQKIWDSVPKPQAHM 203 (712)
Q Consensus 185 ll~-----~~G~I~~~g~~~e~~~ 203 (712)
.+. +.|+|+..|++.++..
T Consensus 904 ~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 904 DLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred EecCCcCCCCCEEEEeCCHHHHHh
Confidence 883 3399999999876653
No 396
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.38 E-value=3.7e-13 Score=131.40 Aligned_cols=127 Identities=13% Similarity=0.152 Sum_probs=85.1
Q ss_pred cEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccccCCCccchhccccCCCcccccchhhHHHHHHHHH
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 120 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~~~~~~~~~v~d~~g~~~~~r~~~~~~ferQrv~~ 120 (712)
.++.|+|||||||||+|+.+....+ ...|......++............++... .....+|+|++.+
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~i~~~---------~~lS~G~~~~~~l 88 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALG----GAQSATRRRSGVKAGCIVAAVSAELIFTR---------LQLSGGEKELSAL 88 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH----hcchhhhccCcccCCCcceeeEEEEehhe---------eeccccHHHHHHH
Confidence 3999999999999999999876652 22222111111100000000000000111 1134558999999
Q ss_pred HHHHH-------HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceec
Q 005138 121 ALAVS-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (712)
Q Consensus 121 A~Ala-------~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~ 188 (712)
|++++ +++|+|||++++|+.. ...+.+.+.++..+ +.++|++||+.+.... +++++.+..
T Consensus 89 a~~L~~~~~~~~~llllDEp~~gld~~~------~~~l~~~l~~~~~~-~~~vii~TH~~~~~~~-~d~~~~l~~ 155 (162)
T cd03227 89 ALILALASLKPRPLYILDEIDRGLDPRD------GQALAEAILEHLVK-GAQVIVITHLPELAEL-ADKLIHIKK 155 (162)
T ss_pred HHHHHhcCCCCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHhc-CCEEEEEcCCHHHHHh-hhhEEEEEE
Confidence 99997 6999999999999998 88899999888766 8999999999987653 677666644
No 397
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.37 E-value=2.4e-12 Score=146.71 Aligned_cols=152 Identities=17% Similarity=0.129 Sum_probs=109.1
Q ss_pred ccEEEEeeeeeec--cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC--ee-
Q 005138 8 CSTQLIDGDGTFN--VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG--IW- 82 (712)
Q Consensus 8 ~~I~l~~l~k~y~--~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g--i~- 82 (712)
.+|.+.|++..-+ ..-+++.+++++.|+ -+-|.||||||||||+|+|+|+= +--+|++....+ .+
T Consensus 391 ~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~------~llI~G~SG~GKTsLlRaiaGLW----P~g~G~I~~P~~~~~lf 460 (604)
T COG4178 391 HGITLENLSLRTPDGQTLLSELNFEVRPGE------RLLITGESGAGKTSLLRALAGLW----PWGSGRISMPADSALLF 460 (604)
T ss_pred ceeEEeeeeEECCCCCeeeccceeeeCCCC------EEEEECCCCCCHHHHHHHHhccC----ccCCCceecCCCCceEE
Confidence 5789999998884 334899999999999 99999999999999999999997 556777443333 23
Q ss_pred eccccCCCccchhcc---------------------ccCCCcc------cc--cchhhHHHHHHHHHHHHHH---HHhhh
Q 005138 83 MARCAGIEPCTLIMD---------------------LEGTDGR------ER--GEDDTAFEKQSALFALAVS---DIVLI 130 (712)
Q Consensus 83 ~~~~~~~~~~~~v~d---------------------~~g~~~~------~r--~~~~~~ferQrv~~A~Ala---~iLlL 130 (712)
+.++ .|.+...+.+ -.|++.- +. .......|+||++|||.+. ++++|
T Consensus 461 lpQ~-PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~L 539 (604)
T COG4178 461 LPQR-PYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFL 539 (604)
T ss_pred ecCC-CCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEE
Confidence 3332 2211111111 1121110 00 0112344999999999999 99999
Q ss_pred ccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccc
Q 005138 131 NMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPL 178 (712)
Q Consensus 131 DEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~ 178 (712)
||-|++||+.. ...+++.+++.. .++|+|.|.|....-..
T Consensus 540 DEATsALDe~~------e~~l~q~l~~~l--p~~tvISV~Hr~tl~~~ 579 (604)
T COG4178 540 DEATSALDEET------EDRLYQLLKEEL--PDATVISVGHRPTLWNF 579 (604)
T ss_pred ecchhccChHH------HHHHHHHHHhhC--CCCEEEEeccchhhHHH
Confidence 99999999998 888888888754 48999999999876543
No 398
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.36 E-value=1e-12 Score=130.47 Aligned_cols=135 Identities=13% Similarity=0.085 Sum_probs=86.1
Q ss_pred EEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeee-cc--ccCCC--ccchhccc--cCCCcccccchhhHHH
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM-AR--CAGIE--PCTLIMDL--EGTDGRERGEDDTAFE 114 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~-~~--~~~~~--~~~~v~d~--~g~~~~~r~~~~~~fe 114 (712)
+.+|+||||||||++|.+|.-..+ ..+-+........+ .. ..+.. ...+.++. .-.+..+..+.....|
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~LS~Ge 99 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLG----GKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVLQGKVEQILSGGE 99 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC----cccccccCcchhhhcccccCCCCceEEEEEEEECceEEecCCcCcccCCHHH
Confidence 899999999999999999864431 01001000000000 00 00000 00001111 0112222223356779
Q ss_pred HHHHHHHHHHH-------HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccccccccee
Q 005138 115 KQSALFALAVS-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRE 187 (712)
Q Consensus 115 rQrv~~A~Ala-------~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~ 187 (712)
+|++.+|++++ +++|+|||+++||+.. ...+.+.+.++.+. |.++|++||+.+... .+++++.+.
T Consensus 100 ~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~------~~~i~~~L~~~~~~-g~tiIiiSH~~~~~~-~adrvi~i~ 171 (178)
T cd03239 100 KSLSALALIFALQEIKPSPFYVLDEIDAALDPTN------RRRVSDMIKEMAKH-TSQFIVITLKKEMFE-NADKLIGVL 171 (178)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEECCHHHHh-hCCeEEEEE
Confidence 99999999884 8999999999999998 89999999998754 899999999987654 577777665
Q ss_pred c
Q 005138 188 D 188 (712)
Q Consensus 188 ~ 188 (712)
.
T Consensus 172 ~ 172 (178)
T cd03239 172 F 172 (178)
T ss_pred E
Confidence 4
No 399
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=99.33 E-value=2.3e-12 Score=132.53 Aligned_cols=197 Identities=43% Similarity=0.624 Sum_probs=117.9
Q ss_pred cccccEEEEEcCCCCChhHHHHHHhcc--ccCccCCCCCeeeccCCeeeccccCC---CccchhccccCCCcccccchhh
Q 005138 37 GLSYAVVSIMGPQSSGKSTLLNHLFGT--NFREMDAFKGRSQTTKGIWMARCAGI---EPCTLIMDLEGTDGRERGEDDT 111 (712)
Q Consensus 37 g~~g~ivaIiGpNGSGKSTLLn~L~Gl--~f~~m~p~sG~~~~t~gi~~~~~~~~---~~~~~v~d~~g~~~~~r~~~~~ 111 (712)
+.++.+|+|+|+.++|||||||.|+|. .|.++... .++|+|+|+...... ...++++|.+|++..++.. .
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~---~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~--~ 78 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTS---QQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGE--F 78 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCC---CCCccceEEEeccccCCCcceEEEEecCCcCccccCc--h
Confidence 467789999999999999999999999 88765543 468999998765432 3567889999999887754 1
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCCchhhhhChhhHHHHHHH----HHHhhCCCCceEEEEecCCCCccc-ccc-----
Q 005138 112 AFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQV----MMRLFSPRKTTLMFVIRDKTRTPL-ENL----- 181 (712)
Q Consensus 112 ~ferQrv~~A~Ala~iLlLDEP~~~LD~~~~a~~~l~~~v~e~----l~~L~~~~g~tiL~VtHDl~~~~~-~~~----- 181 (712)
....+..+++..+++++|++-+.+..+........+.+..... ...........+++|.+|...-.. ...
T Consensus 79 ~~~~~~~~l~~llss~~i~n~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ll~vvRD~~~~~~~~~~~~~~~ 158 (224)
T cd01851 79 EDDARLFALATLLSSVLIYNSWETILGDDLAALMGLLKTTLEVLGLAGLTEFEKPKPLLLFVVRDFSLDTPLENLDITEG 158 (224)
T ss_pred hhhhHHHHHHHHHhCEEEEeccCcccHHHHHHHHHHHHHHHHhhhhhhhhhcccCCCceEEEEecCcCCccccccccccc
Confidence 2233344444445799999988765544332222333322111 112233457889999999854322 111
Q ss_pred cccceecCCeEEEecCcccccCCccchhhhccccccccc--------chhhHHHHHHHHHHhhhhhcc
Q 005138 182 EPVLREDIQKIWDSVPKPQAHMETPLSEFFNVEVVALSS--------FEEKEELFKEQVASLRQRFYH 241 (712)
Q Consensus 182 ~~~ll~~~G~I~~~g~~~e~~~~~~l~d~f~~~~~~l~~--------~~~~~~~f~~~v~~L~~~f~~ 241 (712)
......+..++|....++.. ..-.+.|.....+..+ +...+++|.+++..|+++|..
T Consensus 159 ~~~~~~~~~~ir~~l~~~f~---~~~~~cf~l~~p~~~~~~~~~~~~~~~l~~eF~~~l~~L~~~~~~ 223 (224)
T cd01851 159 RETLIEDLNKIWSSIRKPFE---NPPIDCFFLPRPGLLHHLLQNEGRLKLLPPEFLEALKELRDRFFS 223 (224)
T ss_pred cchhHHHHHHHHHHHHhhcc---CCcchheeccccccchhhcccccchhhCCHHHHHHHHHHHHHhcC
Confidence 11111121233333322211 0112233333233332 345677899999999999873
No 400
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.32 E-value=2e-12 Score=132.02 Aligned_cols=75 Identities=5% Similarity=0.042 Sum_probs=57.7
Q ss_pred hhHHHHHHHHHHHHHH-------HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCC-ceEEEEecCCCCcccccc
Q 005138 110 DTAFEKQSALFALAVS-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRK-TTLMFVIRDKTRTPLENL 181 (712)
Q Consensus 110 ~~~ferQrv~~A~Ala-------~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g-~tiL~VtHDl~~~~~~~~ 181 (712)
....|+|++.++.+++ +++|+|||+++||+.. ...+++.+.++.++.| .++|++||++......++
T Consensus 127 LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~------~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~ 200 (213)
T cd03277 127 QSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTN------ERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHE 200 (213)
T ss_pred ccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHH------HHHHHHHHHHHhhcCCCceEEEEchhhccCCcccC
Confidence 3455999887775532 8999999999999998 9999999999865434 689999999876665555
Q ss_pred --cccceecCCe
Q 005138 182 --EPVLREDIQK 191 (712)
Q Consensus 182 --~~~ll~~~G~ 191 (712)
+++++.+ |+
T Consensus 201 ~~~v~~l~~-g~ 211 (213)
T cd03277 201 KMTVLCVYN-GP 211 (213)
T ss_pred ceEEEEEec-Cc
Confidence 4566655 64
No 401
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.31 E-value=2.5e-12 Score=129.98 Aligned_cols=132 Identities=16% Similarity=0.071 Sum_probs=74.3
Q ss_pred cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccccCCCccchhccccCCC
Q 005138 23 GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTD 102 (712)
Q Consensus 23 ~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~~~~~~~~~v~d~~g~~ 102 (712)
+.++++++. |+ +++|+||||||||||||+|.|..+ | ...|...+.....+. .........+.|..
T Consensus 16 v~n~i~l~~--g~------~~~ltGpNg~GKSTllr~i~~~~~--l-~~~G~~v~a~~~~~q-~~~l~~~~~~~d~l--- 80 (199)
T cd03283 16 VANDIDMEK--KN------GILITGSNMSGKSTFLRTIGVNVI--L-AQAGAPVCASSFELP-PVKIFTSIRVSDDL--- 80 (199)
T ss_pred ecceEEEcC--Cc------EEEEECCCCCChHHHHHHHHHHHH--H-HHcCCEEecCccCcc-cceEEEeccchhcc---
Confidence 456666554 45 999999999999999999998762 0 122332221111111 00000000011110
Q ss_pred cccccchhhHHHHHHHHHHHHHH-----HHhhhccccCCCchhhhhChhhHHHHHH-HHHHhhCCCCceEEEEecCCCCc
Q 005138 103 GRERGEDDTAFEKQSALFALAVS-----DIVLINMWCHDIGREQAANKPLLKTVFQ-VMMRLFSPRKTTLMFVIRDKTRT 176 (712)
Q Consensus 103 ~~~r~~~~~~ferQrv~~A~Ala-----~iLlLDEP~~~LD~~~~a~~~l~~~v~e-~l~~L~~~~g~tiL~VtHDl~~~ 176 (712)
..+......+.+++.-++..+ +++|+|||++++|+.. ...+.. ++.++.+ .|.++|++||+++.+
T Consensus 81 --~~~~s~~~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~------~~~l~~~ll~~l~~-~~~tiiivTH~~~~~ 151 (199)
T cd03283 81 --RDGISYFYAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRE------RQAASAAVLKFLKN-KNTIGIISTHDLELA 151 (199)
T ss_pred --ccccChHHHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHH------HHHHHHHHHHHHHH-CCCEEEEEcCcHHHH
Confidence 000000111233333333332 7999999999999987 555544 5666654 489999999999876
Q ss_pred cc
Q 005138 177 PL 178 (712)
Q Consensus 177 ~~ 178 (712)
..
T Consensus 152 ~~ 153 (199)
T cd03283 152 DL 153 (199)
T ss_pred Hh
Confidence 54
No 402
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.27 E-value=3.2e-12 Score=131.30 Aligned_cols=149 Identities=13% Similarity=0.053 Sum_probs=94.0
Q ss_pred cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccccCCCccchhccccCCC
Q 005138 23 GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTD 102 (712)
Q Consensus 23 ~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~~~~~~~~~v~d~~g~~ 102 (712)
+.++++++...++ ++.|.||||+||||||+++.-..+ | ...|-..+-....+. ...-+++..|..
T Consensus 19 v~~~~~~~~~~~~------~~~l~G~n~~GKstll~~i~~~~~--l-a~~g~~vpa~~~~~~------~~~~il~~~~l~ 83 (222)
T cd03285 19 IPNDVTLTRGKSR------FLIITGPNMGGKSTYIRQIGVIVL--M-AQIGCFVPCDSADIP------IVDCILARVGAS 83 (222)
T ss_pred EEeeEEEeecCCe------EEEEECCCCCChHHHHHHHHHHHH--H-HHhCCCcCcccEEEe------ccceeEeeeccc
Confidence 4578888877777 999999999999999999863321 1 111211111110000 001112223333
Q ss_pred cccccchhhHHHHHHHHHHHHH--H---HHhhhccc---cCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCC
Q 005138 103 GRERGEDDTAFEKQSALFALAV--S---DIVLINMW---CHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKT 174 (712)
Q Consensus 103 ~~~r~~~~~~ferQrv~~A~Al--a---~iLlLDEP---~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~ 174 (712)
... ....+.|++++..++.++ + +++|+||| |+++|+.. .. ..++..+.+..|.++|++||+ .
T Consensus 84 d~~-~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~------~~--~~il~~l~~~~~~~vlisTH~-~ 153 (222)
T cd03285 84 DSQ-LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFG------LA--WAIAEYIATQIKCFCLFATHF-H 153 (222)
T ss_pred cch-hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHH------HH--HHHHHHHHhcCCCeEEEEech-H
Confidence 222 234567899999888888 4 99999999 88899876 32 122233333347899999996 5
Q ss_pred CcccccccccceecCCeEEEecC
Q 005138 175 RTPLENLEPVLREDIQKIWDSVP 197 (712)
Q Consensus 175 ~~~~~~~~~~ll~~~G~I~~~g~ 197 (712)
++...|+++..+.+ |++...+.
T Consensus 154 el~~~~~~~~~i~~-g~~~~~~~ 175 (222)
T cd03285 154 ELTALADEVPNVKN-LHVTALTD 175 (222)
T ss_pred HHHHHhhcCCCeEE-EEEEEEEe
Confidence 55667888888877 89876654
No 403
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.26 E-value=2.9e-12 Score=139.23 Aligned_cols=138 Identities=19% Similarity=0.113 Sum_probs=94.4
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC---e--eeccc-------------c--CCCccc-----
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG---I--WMARC-------------A--GIEPCT----- 93 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g---i--~~~~~-------------~--~~~~~~----- 93 (712)
+|.|+||+|+||-||||-+|+|+|.+ .|.-|+....-+ + .+++. + ...+..
T Consensus 99 ~G~V~GilG~NGiGKsTalkILaGel----~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iP 174 (591)
T COG1245 99 PGKVVGILGPNGIGKSTALKILAGEL----KPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIP 174 (591)
T ss_pred CCcEEEEEcCCCccHHHHHHHHhCcc----ccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHH
Confidence 45599999999999999999999999 788887321100 0 00000 0 000000
Q ss_pred ---------------------hhccccCCCccc--ccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhh
Q 005138 94 ---------------------LIMDLEGTDGRE--RGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPL 147 (712)
Q Consensus 94 ---------------------~v~d~~g~~~~~--r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l 147 (712)
-+.+..++.... .....+..|-||+++|.+++ |+.++|||++-||..+
T Consensus 175 k~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~q------ 248 (591)
T COG1245 175 KVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQ------ 248 (591)
T ss_pred HHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHH------
Confidence 000111111110 11223455999999999999 9999999999999998
Q ss_pred HHHHHHHHHHhhCCCCceEEEEecCCCCccccccccccee
Q 005138 148 LKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRE 187 (712)
Q Consensus 148 ~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~ 187 (712)
+-.+..+++++.+. ++++|+|.||+.....++|-+.++-
T Consensus 249 Rl~~ar~Irel~~~-~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 249 RLNAARVIRELAED-GKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred HHHHHHHHHHHhcc-CCeEEEEechHHHHHHhhheeEEEe
Confidence 88899999999876 8999999999987776666555443
No 404
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=1.3e-11 Score=136.07 Aligned_cols=167 Identities=14% Similarity=0.109 Sum_probs=115.0
Q ss_pred cccEEEEeeeeeecc---ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeee
Q 005138 7 CCSTQLIDGDGTFNV---SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM 83 (712)
Q Consensus 7 ~~~I~l~~l~k~y~~---~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~ 83 (712)
.+.+++.++++.|++ ..+.++++++.... .++++|+||+||||+++++.|-. .|..|-.-......+
T Consensus 360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~s------Ri~~vg~ng~gkst~lKi~~~~l----~~~rgi~~~~~r~ri 429 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDS------RISRVGENGDGKSTLLKILKGDL----TPTRGIVGRHPRLRI 429 (582)
T ss_pred CCeeEEEeeeccCCCcchhhhhccCCccchhh------hhheeccCchhHHHHHHHHhccC----Ccccceeeeccccee
Confidence 357999999999953 24667777777666 89999999999999999999977 566665322211111
Q ss_pred cc----ccC-CCccchh-------------------ccccCCCcccc---cchhhHHHHHHHHHHHHHH---HHhhhccc
Q 005138 84 AR----CAG-IEPCTLI-------------------MDLEGTDGRER---GEDDTAFEKQSALFALAVS---DIVLINMW 133 (712)
Q Consensus 84 ~~----~~~-~~~~~~v-------------------~d~~g~~~~~r---~~~~~~ferQrv~~A~Ala---~iLlLDEP 133 (712)
.. ... ..-..-. +...|+++... ..-.++.|+-||+||...- .+|+||||
T Consensus 430 ~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEP 509 (582)
T KOG0062|consen 430 KYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEP 509 (582)
T ss_pred cchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCC
Confidence 10 000 0000000 01112222111 1112345999999998777 89999999
Q ss_pred cCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEE
Q 005138 134 CHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (712)
Q Consensus 134 ~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~ 194 (712)
|+-||..+ +..+-+.+... +..||+||||.+++...|..+++..+ |++..
T Consensus 510 TNhLD~ds------l~AL~~Al~~F----~GGVv~VSHd~~fi~~~c~E~Wvve~-g~vt~ 559 (582)
T KOG0062|consen 510 TNHLDRDS------LGALAKALKNF----NGGVVLVSHDEEFISSLCKELWVVED-GKVTP 559 (582)
T ss_pred CccccHHH------HHHHHHHHHhc----CCcEEEEECcHHHHhhcCceeEEEcC-CcEEe
Confidence 99999998 77777776664 45899999999999999999999999 98865
No 405
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.21 E-value=1.4e-11 Score=125.04 Aligned_cols=135 Identities=16% Similarity=0.133 Sum_probs=79.6
Q ss_pred cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccccCCCccchhccccCCC
Q 005138 23 GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTD 102 (712)
Q Consensus 23 ~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~~~~~~~~~v~d~~g~~ 102 (712)
+.+++++++..|+ +++|+||||+||||||++|.|+.+ -..-|-..+.....+ ...+... ...+..
T Consensus 18 v~~~~~~~~~~~~------~~~l~G~n~~GKstll~~i~~~~~---la~~G~~vpa~~~~l---~~~d~I~---~~~~~~ 82 (204)
T cd03282 18 IPNDIYLTRGSSR------FHIITGPNMSGKSTYLKQIALLAI---MAQIGCFVPAEYATL---PIFNRLL---SRLSND 82 (204)
T ss_pred EEeeeEEeeCCCc------EEEEECCCCCCHHHHHHHHHHHHH---HHHcCCCcchhhcCc---cChhhee---EecCCc
Confidence 5688889888877 999999999999999999998762 111121110000000 0001111 111111
Q ss_pred cccccchhhHH--HHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHH-HHHHHHhhCCCCceEEEEecCCCCc
Q 005138 103 GRERGEDDTAF--EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTV-FQVMMRLFSPRKTTLMFVIRDKTRT 176 (712)
Q Consensus 103 ~~~r~~~~~~f--erQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v-~e~l~~L~~~~g~tiL~VtHDl~~~ 176 (712)
.... .....| +.+++..+.+++ +++|+|||++|+|+.. ...+ ..++..+.+. |.++|++||+.+.+
T Consensus 83 d~~~-~~~S~fs~e~~~~~~il~~~~~~~lvllDE~~~gt~~~~------~~~l~~~il~~l~~~-~~~~i~~TH~~~l~ 154 (204)
T cd03282 83 DSME-RNLSTFASEMSETAYILDYADGDSLVLIDELGRGTSSAD------GFAISLAILECLIKK-ESTVFFATHFRDIA 154 (204)
T ss_pred cccc-hhhhHHHHHHHHHHHHHHhcCCCcEEEeccccCCCCHHH------HHHHHHHHHHHHHhc-CCEEEEECChHHHH
Confidence 1110 111222 334455555555 9999999999999865 2332 3445555544 89999999999877
Q ss_pred cccc
Q 005138 177 PLEN 180 (712)
Q Consensus 177 ~~~~ 180 (712)
...+
T Consensus 155 ~~~~ 158 (204)
T cd03282 155 AILG 158 (204)
T ss_pred HHhh
Confidence 6443
No 406
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.19 E-value=2.6e-11 Score=124.05 Aligned_cols=150 Identities=13% Similarity=0.054 Sum_probs=80.8
Q ss_pred cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccccCCCccchhccccCCC
Q 005138 23 GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTD 102 (712)
Q Consensus 23 ~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~~~~~~~~~v~d~~g~~ 102 (712)
+.++++++.+. + +++|+|||||||||||+++.+..+ -...|...+..... .++....+ ...+..
T Consensus 20 v~n~~~l~~~~-~------~~~l~Gpn~sGKstllr~i~~~~~---l~~~g~~vp~~~~~----i~~~~~i~--~~~~~~ 83 (216)
T cd03284 20 VPNDTELDPER-Q------ILLITGPNMAGKSTYLRQVALIAL---LAQIGSFVPASKAE----IGVVDRIF--TRIGAS 83 (216)
T ss_pred EeeeEEecCCc-e------EEEEECCCCCChHHHHHHHHHHHH---HhccCCeeccccce----ecceeeEe--ccCCch
Confidence 35677777655 4 899999999999999999987652 12334322211100 01100000 000000
Q ss_pred cccccchhhHHHHHHHHHHHHHH-----HHhhhccc---cCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCC
Q 005138 103 GRERGEDDTAFEKQSALFALAVS-----DIVLINMW---CHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKT 174 (712)
Q Consensus 103 ~~~r~~~~~~ferQrv~~A~Ala-----~iLlLDEP---~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~ 174 (712)
..... ....|......++.++. .++|+||| |+++|+.. +...+.+. +.+..+.++|++||+.+
T Consensus 84 ~~ls~-g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~-----~~~~il~~---l~~~~~~~vi~~TH~~~ 154 (216)
T cd03284 84 DDLAG-GRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLS-----IAWAIVEY---LHEKIGAKTLFATHYHE 154 (216)
T ss_pred hhhcc-CcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHH-----HHHHHHHH---HHhccCCcEEEEeCcHH
Confidence 11111 11344433344444433 89999999 77777643 12333333 33323789999999975
Q ss_pred CcccccccccceecCCeEEEecCcc
Q 005138 175 RTPLENLEPVLREDIQKIWDSVPKP 199 (712)
Q Consensus 175 ~~~~~~~~~~ll~~~G~I~~~g~~~ 199 (712)
.. ..+++...+.+ |++...+...
T Consensus 155 l~-~l~~~~~~v~~-~~~~~~~~~~ 177 (216)
T cd03284 155 LT-ELEGKLPRVKN-FHVAVKEKGG 177 (216)
T ss_pred HH-HHhhcCCCeEE-EEEEEEeeCC
Confidence 43 34555544555 7776655443
No 407
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.17 E-value=3.4e-11 Score=129.60 Aligned_cols=157 Identities=20% Similarity=0.260 Sum_probs=105.7
Q ss_pred cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccC----ccCCCCCeeeccCCeeeccccC-CCc---cch
Q 005138 23 GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFR----EMDAFKGRSQTTKGIWMARCAG-IEP---CTL 94 (712)
Q Consensus 23 ~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~----~m~p~sG~~~~t~gi~~~~~~~-~~~---~~~ 94 (712)
+++++++.+++|+ +++|+|++||||||||++|.|..+. .-+|++|.+.......-+...+ +++ ...
T Consensus 398 vlr~vNL~ikpGd------vvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~t 471 (593)
T COG2401 398 VLRNLNLEIKPGD------VVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVT 471 (593)
T ss_pred eeeceeeEecCCC------eEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchh
Confidence 5789999999999 9999999999999999999997642 2245666532211100000001 111 001
Q ss_pred hcc-----------------ccCCCcc----cccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHH
Q 005138 95 IMD-----------------LEGTDGR----ERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKT 150 (712)
Q Consensus 95 v~d-----------------~~g~~~~----~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~ 150 (712)
+++ -.|+... ..-.+.+..|+.|+-||.+++ .+++.||..+-||+.+ ...
T Consensus 472 ilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~T------A~r 545 (593)
T COG2401 472 ILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELT------AVR 545 (593)
T ss_pred HHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHH------HHH
Confidence 111 1122111 111233445999999999999 8999999999999988 778
Q ss_pred HHHHHHHhhCCCCceEEEEecCCCCccccccc-ccceecCCeE
Q 005138 151 VFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE-PVLREDIQKI 192 (712)
Q Consensus 151 v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~-~~ll~~~G~I 192 (712)
+..-+.++.++.|.|+++|||..+....+.-+ .+++.. |..
T Consensus 546 VArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgY-g~v 587 (593)
T COG2401 546 VARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGY-GKV 587 (593)
T ss_pred HHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeec-ccc
Confidence 88888888877899999999999887665434 444444 543
No 408
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.14 E-value=5.4e-11 Score=118.70 Aligned_cols=124 Identities=17% Similarity=0.088 Sum_probs=69.6
Q ss_pred EEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccccCCCccchhccccCCCcccccchhhHHHHHHHHHH
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFA 121 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~~~~~~~~~v~d~~g~~~~~r~~~~~~ferQrv~~A 121 (712)
++.|.||||+||||||+.+.-..+ -+..|...+.....+. +.+.. +...+...... .....|.++...++
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~---la~~G~~v~a~~~~~~----~~d~i--l~~~~~~d~~~-~~~s~fs~~~~~l~ 70 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVI---MAQIGSFVPAESAELP----VFDRI--FTRIGASDSLA-QGLSTFMVEMKETA 70 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHH---HHHhCCCeeehheEec----ccceE--EEEeCCCCchh-ccccHHHHHHHHHH
Confidence 468999999999999999983321 2344443332222111 11111 11112111111 11234433333344
Q ss_pred HHHH-----HHhhhccccCCCchhhhhChhhHHHHHH-HHHHhhCCCCceEEEEecCCCCccccccc
Q 005138 122 LAVS-----DIVLINMWCHDIGREQAANKPLLKTVFQ-VMMRLFSPRKTTLMFVIRDKTRTPLENLE 182 (712)
Q Consensus 122 ~Ala-----~iLlLDEP~~~LD~~~~a~~~l~~~v~e-~l~~L~~~~g~tiL~VtHDl~~~~~~~~~ 182 (712)
.++. +++|+|||++|+|+.. ...++. ++..+.++.+.++|++||+++. ...+++
T Consensus 71 ~~l~~~~~~~llllDEp~~g~d~~~------~~~~~~~~l~~l~~~~~~~iii~TH~~~l-~~~~~~ 130 (185)
T smart00534 71 NILKNATENSLVLLDELGRGTSTYD------GVAIAAAVLEYLLEKIGALTLFATHYHEL-TKLADE 130 (185)
T ss_pred HHHHhCCCCeEEEEecCCCCCCHHH------HHHHHHHHHHHHHhcCCCeEEEEecHHHH-HHHhhc
Confidence 4444 7999999999999986 555543 4445544248899999999963 334443
No 409
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.11 E-value=1e-10 Score=119.48 Aligned_cols=126 Identities=17% Similarity=0.224 Sum_probs=73.8
Q ss_pred cEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccccCCCccchhccccCCCcccccchhhHHHHHHHHH
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 120 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~~~~~~~~~v~d~~g~~~~~r~~~~~~ferQrv~~ 120 (712)
.++.|.||||+||||||+.+..... | +..|...+.....+ ++.+..+ ......+...........+-|++.+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~--l-a~~G~~v~a~~~~~----~~~d~i~-~~l~~~~si~~~~S~f~~el~~l~~ 101 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVF--L-AHIGSFVPADSATI----GLVDKIF-TRMSSRESVSSGQSAFMIDLYQVSK 101 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHH--H-HhCCCeeEcCCcEE----eeeeeee-eeeCCccChhhccchHHHHHHHHHH
Confidence 4899999999999999999984320 1 34454322221111 1111100 0000000111111112237789999
Q ss_pred HHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCC--CCceEEEEecCCCCcccc
Q 005138 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP--RKTTLMFVIRDKTRTPLE 179 (712)
Q Consensus 121 A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~--~g~tiL~VtHDl~~~~~~ 179 (712)
+++++ .++|+|||++|+|+..+ ...+..++..+.+. .+.++|++||+++.+...
T Consensus 102 ~l~~~~~~slvllDE~~~gtd~~~~-----~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 102 ALRLATRRSLVLIDEFGKGTDTEDG-----AGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHhCCCCcEEEeccccCCCCHHHH-----HHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 88887 99999999999998640 23334566666542 245899999999876543
No 410
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.06 E-value=5.3e-10 Score=129.07 Aligned_cols=82 Identities=13% Similarity=0.102 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHH------HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccce-
Q 005138 114 EKQSALFALAVS------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLR- 186 (712)
Q Consensus 114 erQrv~~A~Ala------~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll- 186 (712)
|.||+-+|.=|+ -+.||||||+||=..- .+.+++++.+|... |-|||++.|+++.+.. ||.++=+
T Consensus 827 EaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~D------i~kLl~VL~rLvd~-GnTViVIEHNLdVIk~-AD~IIDLG 898 (935)
T COG0178 827 EAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDD------IKKLLEVLHRLVDK-GNTVIVIEHNLDVIKT-ADWIIDLG 898 (935)
T ss_pred HHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEecccceEee-cCEEEEcC
Confidence 999999999998 6899999999998887 89999999999875 9999999999998873 5554433
Q ss_pred ----ecCCeEEEecCcccccC
Q 005138 187 ----EDIQKIWDSVPKPQAHM 203 (712)
Q Consensus 187 ----~~~G~I~~~g~~~e~~~ 203 (712)
...|+|++.|+|+++.+
T Consensus 899 PeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 899 PEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCceEEEecCHHHHHh
Confidence 33489999999988754
No 411
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.03 E-value=3.5e-10 Score=116.21 Aligned_cols=133 Identities=14% Similarity=0.156 Sum_probs=79.9
Q ss_pred cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccccCCCccchhccccCCC
Q 005138 23 GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTD 102 (712)
Q Consensus 23 ~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~~~~~~~~~v~d~~g~~ 102 (712)
+.+++++.++.|+ +++|.||||+||||||+++.|..+ .+..|...+.....+. +.+.++ .+....+
T Consensus 20 v~n~i~~~~~~g~------~~~itG~N~~GKStll~~i~~~~~---la~~G~~v~a~~~~~~----~~~~i~-~~~~~~d 85 (222)
T cd03287 20 VPNDIHLSAEGGY------CQIITGPNMGGKSSYIRQVALITI---MAQIGSFVPASSATLS----IFDSVL-TRMGASD 85 (222)
T ss_pred EEEeEEEEecCCc------EEEEECCCCCCHHHHHHHHHHHHH---HHhCCCEEEcCceEEe----ccceEE-EEecCcc
Confidence 4578888888888 999999999999999999999542 4666664333322111 111111 0111111
Q ss_pred cccccchhhHH--HHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHH-HHHHHHHhhCCCCceEEEEecCCCCc
Q 005138 103 GRERGEDDTAF--EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKT-VFQVMMRLFSPRKTTLMFVIRDKTRT 176 (712)
Q Consensus 103 ~~~r~~~~~~f--erQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~-v~e~l~~L~~~~g~tiL~VtHDl~~~ 176 (712)
... .....| |-+++.-.+.-+ .++|+|||.+|.++.. ... ...++..+.+..+.++|++||+++.+
T Consensus 86 ~~~--~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d------~~~i~~~il~~l~~~~~~~~i~~TH~~~l~ 157 (222)
T cd03287 86 SIQ--HGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHD------GIAIAYATLHYLLEEKKCLVLFVTHYPSLG 157 (222)
T ss_pred ccc--cccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhh------HHHHHHHHHHHHHhccCCeEEEEcccHHHH
Confidence 111 122344 334443333333 8999999999888654 222 23344444433488999999999865
Q ss_pred c
Q 005138 177 P 177 (712)
Q Consensus 177 ~ 177 (712)
.
T Consensus 158 ~ 158 (222)
T cd03287 158 E 158 (222)
T ss_pred H
Confidence 4
No 412
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.99 E-value=7.1e-10 Score=122.52 Aligned_cols=175 Identities=13% Similarity=0.160 Sum_probs=130.8
Q ss_pred ccEEEEeeeeeec--cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-e---
Q 005138 8 CSTQLIDGDGTFN--VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-I--- 81 (712)
Q Consensus 8 ~~I~l~~l~k~y~--~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i--- 81 (712)
..+++.+++..-. ...+++++|++..|| |+||.|-.|-|-+.|+.+|+|+. +|.+|++...+. +
T Consensus 256 ~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GE------IvGIAGV~GNGQ~eL~eaisGlr----~~~~G~I~l~G~~v~~~ 325 (501)
T COG3845 256 VVLEVEDLSVKDRRGVTAVKDVSFEVRAGE------IVGIAGVAGNGQSELVEAISGLR----KPASGRILLNGKDVLGR 325 (501)
T ss_pred eEEEEeeeEeecCCCCceeeeeeeEEecCc------EEEEEecCCCCHHHHHHHHhCCC----ccCCceEEECCEecccc
Confidence 3689999988774 346899999999999 99999999999999999999998 788888543321 1
Q ss_pred -ee----ccccCCC-----ccchhcc----------------------------------------ccCCCcccccchhh
Q 005138 82 -WM----ARCAGIE-----PCTLIMD----------------------------------------LEGTDGRERGEDDT 111 (712)
Q Consensus 82 -~~----~~~~~~~-----~~~~v~d----------------------------------------~~g~~~~~r~~~~~ 111 (712)
.. ....++- ...++++ +............+
T Consensus 326 ~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LS 405 (501)
T COG3845 326 LSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLS 405 (501)
T ss_pred CCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcC
Confidence 00 0001110 0011111 00000111111223
Q ss_pred HHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceec
Q 005138 112 AFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (712)
Q Consensus 112 ~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~ 188 (712)
...+|++.+||=+. ++||+..||.|||... ...|.+.+.+..+. |+.||++|-|++++..+||++.++.+
T Consensus 406 GGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA------~~~I~~~l~e~r~~-G~AVLLiS~dLDEil~lsDrIaVi~~ 478 (501)
T COG3845 406 GGNQQKLILARELARRPDLLIAAQPTRGLDVGA------IEFIHERLLELRDA-GKAVLLISEDLDEILELSDRIAVIYE 478 (501)
T ss_pred CcceehhhhhhhhccCCCEEEEcCCCccccHHH------HHHHHHHHHHHHhc-CCEEEEEehhHHHHHHhhheeeeeeC
Confidence 33899999999999 9999999999999988 88999999998775 99999999999999999999999999
Q ss_pred CCeEEEecCccc
Q 005138 189 IQKIWDSVPKPQ 200 (712)
Q Consensus 189 ~G~I~~~g~~~e 200 (712)
|+|+...++.+
T Consensus 479 -Gri~~~~~~~~ 489 (501)
T COG3845 479 -GRIVGIVPPEE 489 (501)
T ss_pred -Cceeccccccc
Confidence 99998887654
No 413
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.96 E-value=8.6e-10 Score=116.40 Aligned_cols=136 Identities=14% Similarity=0.115 Sum_probs=75.2
Q ss_pred cEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-eeeccccCCCccchhccccCCCccc---ccchhhHHHHH
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IWMARCAGIEPCTLIMDLEGTDGRE---RGEDDTAFEKQ 116 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~~~~~~~~~~~~~v~d~~g~~~~~---r~~~~~~ferQ 116 (712)
.-++|+||||||||||+++|+|.. .|.+|++...+. +.... ...-+.....+.+... +........+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~----~~~~G~i~~~g~~v~~~d----~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~ 183 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARIL----STGISQLGLRGKKVGIVD----ERSEIAGCVNGVPQHDVGIRTDVLDGCPKA 183 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCcc----CCCCceEEECCEEeecch----hHHHHHHHhcccccccccccccccccchHH
Confidence 478999999999999999999999 788887533221 11000 0000000011111111 00000111223
Q ss_pred HHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCC--c-----------cccc
Q 005138 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTR--T-----------PLEN 180 (712)
Q Consensus 117 rv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~--~-----------~~~~ 180 (712)
..++..+.+ +++|+|||.. ...+..++..+ . .|.++|+++|+.+. + ...+
T Consensus 184 ~~~~~~i~~~~P~villDE~~~------------~e~~~~l~~~~-~-~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~ 249 (270)
T TIGR02858 184 EGMMMLIRSMSPDVIVVDEIGR------------EEDVEALLEAL-H-AGVSIIATAHGRDVEDLYKRPVFKELIENEAF 249 (270)
T ss_pred HHHHHHHHhCCCCEEEEeCCCc------------HHHHHHHHHHH-h-CCCEEEEEechhHHHHHHhChHHHHHHhcCce
Confidence 333444443 9999999853 33344444444 3 49999999998654 3 2446
Q ss_pred ccccceecCCeEEEecCcccc
Q 005138 181 LEPVLREDIQKIWDSVPKPQA 201 (712)
Q Consensus 181 ~~~~ll~~~G~I~~~g~~~e~ 201 (712)
++++++.+ |+ ..|++.++
T Consensus 250 ~r~i~L~~-~~--~~g~~~~i 267 (270)
T TIGR02858 250 ERYVVLSR-RK--GPGTVEAV 267 (270)
T ss_pred EEEEEEec-CC--CCCceeec
Confidence 77777776 54 45555443
No 414
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.96 E-value=1.4e-09 Score=137.23 Aligned_cols=83 Identities=14% Similarity=0.086 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHH------HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccccccccee
Q 005138 114 EKQSALFALAVS------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRE 187 (712)
Q Consensus 114 erQrv~~A~Ala------~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~ 187 (712)
|.||+-+|.-|. .++||||||.||++.. .+.+++++.+|... |.|||+|+||++.+.. ||.++=+-
T Consensus 1704 E~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d------~~~Ll~~l~~L~~~-g~tvivieH~~~~i~~-aD~iidlg 1775 (1809)
T PRK00635 1704 EKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQ------KSALLVQLRTLVSL-GHSVIYIDHDPALLKQ-ADYLIEMG 1775 (1809)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHH------HHHHHHHHHHHHhc-CCeEEEEeCCHHHHHh-CCEEEEcC
Confidence 999999999997 4899999999999998 99999999999875 9999999999998775 67665552
Q ss_pred -----cCCeEEEecCcccccCC
Q 005138 188 -----DIQKIWDSVPKPQAHME 204 (712)
Q Consensus 188 -----~~G~I~~~g~~~e~~~~ 204 (712)
..|+|++.|+|+++..+
T Consensus 1776 p~gG~~GG~iva~Gtp~~i~~~ 1797 (1809)
T PRK00635 1776 PGSGKTGGKILFSGPPKDISAS 1797 (1809)
T ss_pred CCcccCCCEEEEEeCHHHHhhC
Confidence 33799999999887643
No 415
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=2.3e-10 Score=123.59 Aligned_cols=166 Identities=14% Similarity=0.110 Sum_probs=100.4
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeecccc
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCA 87 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~~ 87 (712)
-|.|.|.+.+-. ...+.+.++.|-.|. .+|++||||-||||||++|..-.|+. +|.-.-..|...+......
T Consensus 264 DIKiEnF~ISA~Gk~LFvnA~L~Iv~GR------RYGLVGPNG~GKTTLLkHIa~RalaI-PpnIDvLlCEQEvvad~t~ 336 (807)
T KOG0066|consen 264 DIKIENFDISAQGKLLFVNASLTIVYGR------RYGLVGPNGMGKTTLLKHIAARALAI-PPNIDVLLCEQEVVADSTS 336 (807)
T ss_pred cceeeeeeeecccceeeeccceEEEecc------eecccCCCCCchHHHHHHHHhhhccC-CCCCceEeeeeeeeecCcH
Confidence 477777666552 334567888888887 99999999999999999998765431 2321111111111111000
Q ss_pred CC-------------------------Cccch-------h---ccccCCCcccc-cc------------------hhhHH
Q 005138 88 GI-------------------------EPCTL-------I---MDLEGTDGRER-GE------------------DDTAF 113 (712)
Q Consensus 88 ~~-------------------------~~~~~-------v---~d~~g~~~~~r-~~------------------~~~~f 113 (712)
.+ ..... + +...|.+..+. .. ..+..
T Consensus 337 Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGG 416 (807)
T KOG0066|consen 337 AIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGG 416 (807)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCc
Confidence 00 00000 0 00111111110 00 00111
Q ss_pred HHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCC
Q 005138 114 EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ 190 (712)
Q Consensus 114 erQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G 190 (712)
=|.|+.+|+||. -+|+|||||+.||... .-.+-..+... ++|+|+|+||..+....|.+++-+.. .
T Consensus 417 WRMRvSLARALflEPTLLMLDEPTNHLDLNA------VIWLdNYLQgW----kKTLLIVSHDQgFLD~VCtdIIHLD~-q 485 (807)
T KOG0066|consen 417 WRMRVSLARALFLEPTLLMLDEPTNHLDLNA------VIWLDNYLQGW----KKTLLIVSHDQGFLDSVCTDIIHLDN-Q 485 (807)
T ss_pred eeeehhHHHHHhcCceeeeecCCccccccce------eeehhhHHhhh----hheeEEEecccchHHHHHHHHhhhhh-h
Confidence 567999999998 8999999999999876 33333333332 57999999999999989998887766 5
Q ss_pred eE
Q 005138 191 KI 192 (712)
Q Consensus 191 ~I 192 (712)
++
T Consensus 486 kL 487 (807)
T KOG0066|consen 486 KL 487 (807)
T ss_pred hh
Confidence 55
No 416
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.95 E-value=1.1e-09 Score=116.29 Aligned_cols=69 Identities=13% Similarity=0.058 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHHH-------HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccc
Q 005138 111 TAFEKQSALFALAVS-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEP 183 (712)
Q Consensus 111 ~~ferQrv~~A~Ala-------~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~ 183 (712)
...|+||+++|++++ +++|+|||+++||+.. ...+.+.+.++.+ +.|+|++||++.. ...|+++
T Consensus 172 S~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~------~~~l~~~l~~~~~--~~tii~isH~~~~-~~~~d~~ 242 (276)
T cd03241 172 SGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEV------AQAVGKKLKELSR--SHQVLCITHLPQV-AAMADNH 242 (276)
T ss_pred ChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHH------HHHHHHHHHHHhC--CCEEEEEechHHH-HHhcCcE
Confidence 455999999997542 8999999999999998 9999999998853 7899999999985 4578888
Q ss_pred cceec
Q 005138 184 VLRED 188 (712)
Q Consensus 184 ~ll~~ 188 (712)
+++.+
T Consensus 243 ~~l~~ 247 (276)
T cd03241 243 FLVEK 247 (276)
T ss_pred EEEEE
Confidence 88877
No 417
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.89 E-value=1e-08 Score=114.92 Aligned_cols=150 Identities=17% Similarity=0.159 Sum_probs=99.3
Q ss_pred ccEEEEeeeeeec--cc-cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeec-cC----
Q 005138 8 CSTQLIDGDGTFN--VS-GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQT-TK---- 79 (712)
Q Consensus 8 ~~I~l~~l~k~y~--~~-~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~-t~---- 79 (712)
.+|++.+++..-. +. .+++.+++|..|. -+-|.||||||||+|||.|.|+= +-.+|+... ++
T Consensus 432 n~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~------~LLItG~sG~GKtSLlRvlggLW----p~~~G~l~k~~~~~~~ 501 (659)
T KOG0060|consen 432 NAIEFEEVSLSTPTNGDLLIENLSLEVPSGQ------NLLITGPSGCGKTSLLRVLGGLW----PSTGGKLTKPTDGGPK 501 (659)
T ss_pred ceEEeeeeeecCCCCCceeeeeeeeEecCCC------eEEEECCCCCchhHHHHHHhccc----ccCCCeEEecccCCCC
Confidence 4688888887763 22 3678999999999 99999999999999999999997 446777431 11
Q ss_pred Ceee-ccccCC------Cccchh-----cc------------------------ccCCCcc---cccchhhHHHHHHHHH
Q 005138 80 GIWM-ARCAGI------EPCTLI-----MD------------------------LEGTDGR---ERGEDDTAFEKQSALF 120 (712)
Q Consensus 80 gi~~-~~~~~~------~~~~~v-----~d------------------------~~g~~~~---~r~~~~~~ferQrv~~ 120 (712)
++++ .+++-. +..++. ++ ..|.+.. .-.+..+..|+||+++
T Consensus 502 ~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ 581 (659)
T KOG0060|consen 502 DLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAF 581 (659)
T ss_pred ceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHH
Confidence 2322 222110 000000 01 1111110 0001123349999999
Q ss_pred HHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcc
Q 005138 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (712)
Q Consensus 121 A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~ 177 (712)
||-+. ++-||||-|+++|... -..+.+.++ +.|+|.|=|+|......
T Consensus 582 ARLfy~kPk~AiLDE~TSAv~~dv------E~~~Yr~~r----~~giT~iSVgHRkSL~k 631 (659)
T KOG0060|consen 582 ARLFYHKPKFAILDECTSAVTEDV------EGALYRKCR----EMGITFISVGHRKSLWK 631 (659)
T ss_pred HHHHhcCCceEEeechhhhccHHH------HHHHHHHHH----HcCCeEEEeccHHHHHh
Confidence 99998 9999999999998765 444444444 45999999999987655
No 418
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.88 E-value=1.6e-09 Score=129.39 Aligned_cols=120 Identities=13% Similarity=0.135 Sum_probs=71.8
Q ss_pred cEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeecc-CCeeeccccCCCccchhccccCCCc-c-cccchhhHHHHHH
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT-KGIWMARCAGIEPCTLIMDLEGTDG-R-ERGEDDTAFEKQS 117 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t-~gi~~~~~~~~~~~~~v~d~~g~~~-~-~r~~~~~~ferQr 117 (712)
.+++|.||||+||||||++|.|..+ -+..|-..+. .+..+ ++....+ .+. |... . .........+++.
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~~l---~aq~G~~Vpa~~~~~~----~~~d~i~-~~i-~~~~si~~~LStfS~~m~~~ 393 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLLAL---MFQSGIPIPANEHSEI----PYFEEIF-ADI-GDEQSIEQNLSTFSGHMKNI 393 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHHHH---HHHhCCCccCCccccc----cchhhee-eec-ChHhHHhhhhhHHHHHHHHH
Confidence 4999999999999999999999831 2444421111 11111 1111111 011 1100 0 0001122336777
Q ss_pred HHHHHHHH--HHhhhccccCCCchhhhhChhhHHHHH-HHHHHhhCCCCceEEEEecCCCCc
Q 005138 118 ALFALAVS--DIVLINMWCHDIGREQAANKPLLKTVF-QVMMRLFSPRKTTLMFVIRDKTRT 176 (712)
Q Consensus 118 v~~A~Ala--~iLlLDEP~~~LD~~~~a~~~l~~~v~-e~l~~L~~~~g~tiL~VtHDl~~~ 176 (712)
+.++.++. .++|+|||++|+||.. ...+. .++..+.+ .|+++|++||+.+..
T Consensus 394 ~~il~~~~~~sLvLlDE~g~GtD~~e------g~ala~aiLe~l~~-~g~~viitTH~~eL~ 448 (771)
T TIGR01069 394 SAILSKTTENSLVLFDELGAGTDPDE------GSALAISILEYLLK-QNAQVLITTHYKELK 448 (771)
T ss_pred HHHHHhcCCCcEEEecCCCCCCCHHH------HHHHHHHHHHHHHh-cCCEEEEECChHHHH
Confidence 77666554 8999999999999987 55553 44555544 589999999998753
No 419
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.85 E-value=1.6e-09 Score=117.32 Aligned_cols=154 Identities=18% Similarity=0.156 Sum_probs=105.1
Q ss_pred ccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccc-c---------------
Q 005138 24 IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC-A--------------- 87 (712)
Q Consensus 24 L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~-~--------------- 87 (712)
+.++.+.|..|+. -+.+++..+|.||.|||||+++|+|.. +|+.|.-.+.-.+.+... +
T Consensus 352 ~g~F~L~i~~Gef-sdSeiivmlgEngtgkTTfi~mlag~~----~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~k 426 (592)
T KOG0063|consen 352 VGDFCLCIKVGEF-SDSEIIVMLGENGTGKTTFIRMLAGRL----KPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTK 426 (592)
T ss_pred eeeEEEEEeeccc-CCceeEEEEccCCcchhHHHHHHhcCC----CCCccCcccccceeccccccCccccchHHHHHHHH
Confidence 5678888888872 356899999999999999999999988 888886332222211110 0
Q ss_pred ---CCCccchhccccCCCccc-----ccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHH
Q 005138 88 ---GIEPCTLIMDLEGTDGRE-----RGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMM 156 (712)
Q Consensus 88 ---~~~~~~~v~d~~g~~~~~-----r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~ 156 (712)
.+.+..++-|+...-..+ ......+.|.||+++|+.+. ++.++|||.+-||.++ +...-.+++
T Consensus 427 Ir~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQ------Ri~Askvik 500 (592)
T KOG0063|consen 427 IRDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQ------RIIASKVIK 500 (592)
T ss_pred hHhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHH------HHHHHHHHH
Confidence 011222222221100000 01122345999999999997 9999999999999998 766777777
Q ss_pred HhhCCCCceEEEEecCCCCcccccccccceec
Q 005138 157 RLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (712)
Q Consensus 157 ~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~ 188 (712)
+..-..++|-.+|.||+-.+..++|++++...
T Consensus 501 RfilhakktafvVEhdfImaTYladrvivf~G 532 (592)
T KOG0063|consen 501 RFILHAKKTAFVVEHDFIMATYLADRVIVFEG 532 (592)
T ss_pred HHHHhccchhhhhhhHHHHHHhhcceeEEEec
Confidence 76655688999999999877767777665543
No 420
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.81 E-value=1.5e-08 Score=113.65 Aligned_cols=158 Identities=13% Similarity=0.053 Sum_probs=95.2
Q ss_pred ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeecc--CCeeecc-------ccCCCcc
Q 005138 22 SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT--KGIWMAR-------CAGIEPC 92 (712)
Q Consensus 22 ~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t--~gi~~~~-------~~~~~~~ 92 (712)
.+++++ +.+..|+ +++|+|+||+|||||+++|+|.. +|+.|.+... +|..+.. ..+....
T Consensus 147 ~vid~l-~~i~~Gq------~i~I~G~sG~GKStLl~~I~~~~----~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~ 215 (438)
T PRK07721 147 RAIDSL-LTVGKGQ------RVGIFAGSGVGKSTLMGMIARNT----SADLNVIALIGERGREVREFIERDLGPEGLKRS 215 (438)
T ss_pred hhhhee-eeecCCc------EEEEECCCCCCHHHHHHHHhccc----CCCeEEEEEEecCCccHHHHHHhhcChhhhcCe
Confidence 457788 9999998 99999999999999999999988 6776653210 1110000 0000011
Q ss_pred chhccccCCCcccccchh-------hHH----------HHHHHHHHHHHHHH-hhhccc--cCCCchhhhhChhhHHHHH
Q 005138 93 TLIMDLEGTDGRERGEDD-------TAF----------EKQSALFALAVSDI-VLINMW--CHDIGREQAANKPLLKTVF 152 (712)
Q Consensus 93 ~~v~d~~g~~~~~r~~~~-------~~f----------erQrv~~A~Ala~i-LlLDEP--~~~LD~~~~a~~~l~~~v~ 152 (712)
..+.-....+...+.... ..| .--..-+|+|.-++ +.+.|| +.|+||.. ...+.
T Consensus 216 v~vv~~~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~------~~~l~ 289 (438)
T PRK07721 216 IVVVATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSV------FAILP 289 (438)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHH------HHHHH
Confidence 111111001111100000 000 11112334444443 345676 46788876 78888
Q ss_pred HHHHHhhC-CCCc-----eEEEEecCCCCcccccccccceecCCeEEEecCcc
Q 005138 153 QVMMRLFS-PRKT-----TLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (712)
Q Consensus 153 e~l~~L~~-~~g~-----tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~ 199 (712)
+++.++.. ..|. ||++.+||++. .+|+++..+.+ |+|+.++...
T Consensus 290 ~ller~~~~~~GsIT~~~TVlv~~hdm~e--~i~d~v~~i~d-G~Ivls~~la 339 (438)
T PRK07721 290 KLLERTGTNASGSITAFYTVLVDGDDMNE--PIADTVRGILD-GHFVLDRQLA 339 (438)
T ss_pred HHHHHhcCCCCCCeeeEEEEEEECCCCCc--hhhhhEEEecC-EEEEEeccHH
Confidence 88888863 3475 99999999985 56889999988 9999988753
No 421
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.81 E-value=5.5e-09 Score=107.09 Aligned_cols=136 Identities=14% Similarity=0.143 Sum_probs=78.4
Q ss_pred cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccccCCCccchhccccCCC
Q 005138 23 GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTD 102 (712)
Q Consensus 23 ~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~~~~~~~~~v~d~~g~~ 102 (712)
+-++++++.+.++ ++.|.||||+|||||++++.+..+ -...|-..+-....+ +....++ ... |..
T Consensus 19 v~ndi~l~~~~~~------~~~itG~n~~gKs~~l~~i~~~~~---la~~G~~vpa~~~~i----~~~~~i~-~~~-~~~ 83 (218)
T cd03286 19 VPNDVDLGATSPR------ILVLTGPNMGGKSTLLRTVCLAVI---MAQMGMDVPAKSMRL----SLVDRIF-TRI-GAR 83 (218)
T ss_pred EEeeeEEeecCCc------EEEEECCCCCchHHHHHHHHHHHH---HHHcCCccCccccEe----ccccEEE-Eec-Ccc
Confidence 3578888888777 999999999999999999998752 112232111111110 0000000 011 111
Q ss_pred cccccchhhHH--HHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHH-HHHhhCCCCceEEEEecCCCCc
Q 005138 103 GRERGEDDTAF--EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQV-MMRLFSPRKTTLMFVIRDKTRT 176 (712)
Q Consensus 103 ~~~r~~~~~~f--erQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~-l~~L~~~~g~tiL~VtHDl~~~ 176 (712)
.... .....| |-+++.-.+..+ .++|+|||++|.++.. ...+... +..+.+..+.++|++||+++.+
T Consensus 84 d~~~-~~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~d------g~~la~ail~~L~~~~~~~~i~~TH~~el~ 156 (218)
T cd03286 84 DDIM-KGESTFMVELSETANILRHATPDSLVILDELGRGTSTHD------GYAIAHAVLEYLVKKVKCLTLFSTHYHSLC 156 (218)
T ss_pred cccc-cCcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchH------HHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 1111 112344 334443333333 8999999999999876 4444444 3333332389999999999876
Q ss_pred cccc
Q 005138 177 PLEN 180 (712)
Q Consensus 177 ~~~~ 180 (712)
...+
T Consensus 157 ~~~~ 160 (218)
T cd03286 157 DEFH 160 (218)
T ss_pred HHhh
Confidence 6543
No 422
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.79 E-value=2.2e-08 Score=111.02 Aligned_cols=149 Identities=16% Similarity=0.116 Sum_probs=94.7
Q ss_pred cEEEEeeeeeec--cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeee-ccC-Ceee-
Q 005138 9 STQLIDGDGTFN--VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ-TTK-GIWM- 83 (712)
Q Consensus 9 ~I~l~~l~k~y~--~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~-~t~-gi~~- 83 (712)
.|.+.|+-.--. ..++...+|.|+.|. .+.|+||||||||+|.++|.|+= +...|... +.. .+++
T Consensus 481 gI~lenIpvItP~~~vvv~~Ltf~i~~G~------hLLItGPNGCGKSSLfRILggLW----Pvy~g~L~~P~~~~mFYI 550 (728)
T KOG0064|consen 481 GIILENIPVITPAGDVLVPKLTFQIEPGM------HLLITGPNGCGKSSLFRILGGLW----PVYNGLLSIPRPNNIFYI 550 (728)
T ss_pred ceEEecCceeccCcceeecceeEEecCCc------eEEEECCCCccHHHHHHHHhccC----cccCCeeecCCCcceEec
Confidence 356666655552 224678999999998 99999999999999999999987 55566521 111 1111
Q ss_pred ccc-----------cCCCcc--------------chhcccc----------CCCccc-ccchhhHHHHHHHHHHHHHH--
Q 005138 84 ARC-----------AGIEPC--------------TLIMDLE----------GTDGRE-RGEDDTAFEKQSALFALAVS-- 125 (712)
Q Consensus 84 ~~~-----------~~~~~~--------------~~v~d~~----------g~~~~~-r~~~~~~ferQrv~~A~Ala-- 125 (712)
.++ +.|+.. .-+++.. |.+... -.+.....|+||+.+|+..-
T Consensus 551 PQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHr 630 (728)
T KOG0064|consen 551 PQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHR 630 (728)
T ss_pred cCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcC
Confidence 111 001100 0001100 111000 01122345999999999998
Q ss_pred -HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcc
Q 005138 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (712)
Q Consensus 126 -~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~ 177 (712)
...+|||-|+++-+.- -..+++..++ .|.++|-|||......
T Consensus 631 PkyalLDEcTsAvsidv------E~~i~~~ak~----~gi~llsithrpslwk 673 (728)
T KOG0064|consen 631 PKYALLDECTSAVSIDV------EGKIFQAAKD----AGISLLSITHRPSLWK 673 (728)
T ss_pred cchhhhhhhhcccccch------HHHHHHHHHh----cCceEEEeecCccHHH
Confidence 8999999999876654 5567766555 5999999999987654
No 423
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.78 E-value=7.4e-09 Score=109.48 Aligned_cols=67 Identities=6% Similarity=0.068 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHH------------HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccc-
Q 005138 114 EKQSALFALAVS------------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN- 180 (712)
Q Consensus 114 erQrv~~A~Ala------------~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~- 180 (712)
|+|++.+|++++ +++|+|||+++||+.. ...+++.+.++ + .+++++|+...+...|
T Consensus 188 q~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~------~~~l~~~l~~~----~-q~ii~~~~~~~~~~~~~ 256 (270)
T cd03242 188 QQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGR------QAALLDAIEGR----V-QTFVTTTDLADFDALWL 256 (270)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHH------HHHHHHHhhcC----C-CEEEEeCCchhccchhc
Confidence 999999999873 7999999999999988 88888887764 2 4667777766555555
Q ss_pred --ccccceecCCeE
Q 005138 181 --LEPVLREDIQKI 192 (712)
Q Consensus 181 --~~~~ll~~~G~I 192 (712)
.+++.+.+ |+|
T Consensus 257 ~~~~i~~l~~-g~i 269 (270)
T cd03242 257 RRAQIFRVDA-GTL 269 (270)
T ss_pred cCccEEEEeC-cEE
Confidence 44555555 765
No 424
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.73 E-value=8.2e-09 Score=123.64 Aligned_cols=130 Identities=14% Similarity=0.075 Sum_probs=77.5
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC-CeeeccccCCCccchhccccCCCccc-ccchhhHHHHH
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-GIWMARCAGIEPCTLIMDLEGTDGRE-RGEDDTAFEKQ 116 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~-gi~~~~~~~~~~~~~v~d~~g~~~~~-r~~~~~~ferQ 116 (712)
++.++.|.|||++||||+|+.+....+ -+..|-..+-. +. .+++...++ .+........ ........+++
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~---maq~G~~vpa~~~~----~i~~~~~i~-~~ig~~~si~~~lStfS~~m~~ 397 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAAL---MAKSGLPIPANEPS----EIPVFKEIF-ADIGDEQSIEQSLSTFSGHMTN 397 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHH---HHHhCCCcccCCCc----cccccceEE-EecCCccchhhchhHHHHHHHH
Confidence 345899999999999999999976531 12333211111 10 011111111 0111011111 11122445888
Q ss_pred HHHHHHHHH--HHhhhccccCCCchhhhhChhhHHHHHH-HHHHhhCCCCceEEEEecCCCCcccccccc
Q 005138 117 SALFALAVS--DIVLINMWCHDIGREQAANKPLLKTVFQ-VMMRLFSPRKTTLMFVIRDKTRTPLENLEP 183 (712)
Q Consensus 117 rv~~A~Ala--~iLlLDEP~~~LD~~~~a~~~l~~~v~e-~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~ 183 (712)
++.+++++. .++|+|||++|+||.. ...+.. ++..+.+ .|.++|++||+.+.+...+++.
T Consensus 398 ~~~Il~~~~~~sLvLlDE~~~GtDp~e------g~ala~aile~l~~-~~~~vIitTH~~el~~~~~~~~ 460 (782)
T PRK00409 398 IVRILEKADKNSLVLFDELGAGTDPDE------GAALAISILEYLRK-RGAKIIATTHYKELKALMYNRE 460 (782)
T ss_pred HHHHHHhCCcCcEEEecCCCCCCCHHH------HHHHHHHHHHHHHH-CCCEEEEECChHHHHHHHhcCC
Confidence 888888766 9999999999999986 555544 3444444 4899999999987766544433
No 425
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.69 E-value=1.2e-08 Score=123.60 Aligned_cols=87 Identities=11% Similarity=0.015 Sum_probs=76.0
Q ss_pred chhhHHHHHHHHHHHHHH-----HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccccc
Q 005138 108 EDDTAFEKQSALFALAVS-----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE 182 (712)
Q Consensus 108 ~~~~~ferQrv~~A~Ala-----~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~ 182 (712)
...+..|+||+.||++++ +++||||||++||+.. ...+++++.++.+ .|.|||+|+||++++. .||+
T Consensus 488 ~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~------~~~L~~~L~~L~~-~G~TVIvVeH~~~~i~-~aD~ 559 (943)
T PRK00349 488 GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRD------NDRLIETLKHLRD-LGNTLIVVEHDEDTIR-AADY 559 (943)
T ss_pred hhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHH------HHHHHHHHHHHHh-CCCEEEEEeCCHHHHH-hCCE
Confidence 445667999999999998 4899999999999999 9999999999976 4999999999998876 5999
Q ss_pred ccce------ecCCeEEEecCcccccC
Q 005138 183 PVLR------EDIQKIWDSVPKPQAHM 203 (712)
Q Consensus 183 ~~ll------~~~G~I~~~g~~~e~~~ 203 (712)
++++ .+ |+|+..|++.++..
T Consensus 560 vi~LgpgaG~~~-G~iv~~g~~~e~~~ 585 (943)
T PRK00349 560 IVDIGPGAGVHG-GEVVASGTPEEIMK 585 (943)
T ss_pred EEEeccccCCCC-CEEeeccCHHHHhc
Confidence 9988 66 99999998877643
No 426
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.69 E-value=1.4e-08 Score=123.19 Aligned_cols=166 Identities=16% Similarity=0.154 Sum_probs=115.2
Q ss_pred ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCe----eec-cccCC-------
Q 005138 22 SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGI----WMA-RCAGI------- 89 (712)
Q Consensus 22 ~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi----~~~-~~~~~------- 89 (712)
..+++++.-+++|+ .+-++||.||||||||++|+|-.- .+.-..|++ +..|. ... +...+
T Consensus 129 ~il~~~sg~~~pg~------m~lvLG~pgsG~ttllkal~g~~~-~~~~~~~~i-sy~G~~~~e~~~~~~~aY~~e~DvH 200 (1391)
T KOG0065|consen 129 QILKDISGIIKPGE------MTLVLGPPGSGKTTLLKALAGKLD-NFLKSSGEI-TYNGHDLKEFVPKKTVAYNSEQDVH 200 (1391)
T ss_pred eeecCcceeEcCCc------eEEEecCCCCchHHHHHHHhCCCc-ccccCCCce-eECCCcccccccCceEEeccccccc
Confidence 35889999999998 999999999999999999999761 112223321 11111 000 00000
Q ss_pred Cccch-------hccccCC----Ccccccc-----------------------------hhhHHHHHHHHHHHHHH---H
Q 005138 90 EPCTL-------IMDLEGT----DGRERGE-----------------------------DDTAFEKQSALFALAVS---D 126 (712)
Q Consensus 90 ~~~~~-------v~d~~g~----~~~~r~~-----------------------------~~~~ferQrv~~A~Ala---~ 126 (712)
.+.+. +.+..+- +...|.+ ...+.||+|+.+|-+++ .
T Consensus 201 ~p~lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~ 280 (1391)
T KOG0065|consen 201 FPELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPAS 280 (1391)
T ss_pred cceeEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcc
Confidence 11111 1111111 1111111 01222999999999888 9
Q ss_pred HhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCC-CCcccccccccceecCCeEEEecCccccc
Q 005138 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDK-TRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (712)
Q Consensus 127 iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl-~~~~~~~~~~~ll~~~G~I~~~g~~~e~~ 202 (712)
++..||+|.|||-.. .-++.+.++++.+..+.|.+++.+.. .++-.+-|++++|.+ |+++..|+.+++.
T Consensus 281 ~~~~De~t~GLDSsT------al~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e-G~~iy~Gp~d~~~ 350 (1391)
T KOG0065|consen 281 ILFWDEITRGLDSST------AFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSE-GYQIYQGPRDEVL 350 (1391)
T ss_pred eeeeecccccccHHH------HHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeec-cceEEeccHHHHH
Confidence 999999999999988 88888889998887899999999998 577778899999999 9999999987653
No 427
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.65 E-value=1.8e-08 Score=122.06 Aligned_cols=86 Identities=10% Similarity=0.025 Sum_probs=76.0
Q ss_pred chhhHHHHHHHHHHHHHH-----HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccccc
Q 005138 108 EDDTAFEKQSALFALAVS-----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE 182 (712)
Q Consensus 108 ~~~~~ferQrv~~A~Ala-----~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~ 182 (712)
...+..|+||+.||++++ .++||||||+|||+.. ...+++++.++.+. |.|||+|+||++.+. .||+
T Consensus 486 ~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~------~~~L~~~L~~L~~~-G~TVIvVeHd~~~i~-~aD~ 557 (924)
T TIGR00630 486 GTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRD------NERLINTLKRLRDL-GNTVIVVEHDEETIR-AADY 557 (924)
T ss_pred CcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHH------HHHHHHHHHHHHhC-CCEEEEEECCHHHHh-hCCE
Confidence 345677999999999998 4999999999999999 99999999999765 999999999998876 7999
Q ss_pred ccce------ecCCeEEEecCccccc
Q 005138 183 PVLR------EDIQKIWDSVPKPQAH 202 (712)
Q Consensus 183 ~~ll------~~~G~I~~~g~~~e~~ 202 (712)
+++| .+ |+|+..|++.++.
T Consensus 558 vi~LgpgaG~~~-G~Iv~~g~~~el~ 582 (924)
T TIGR00630 558 VIDIGPGAGIHG-GEVVASGTPEEIL 582 (924)
T ss_pred EEEecccccCCC-CEEeeccCHHHHh
Confidence 9999 56 9999999877654
No 428
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.56 E-value=2.1e-07 Score=91.71 Aligned_cols=51 Identities=8% Similarity=0.145 Sum_probs=41.2
Q ss_pred HHHHHHHH--HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCC
Q 005138 118 ALFALAVS--DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTR 175 (712)
Q Consensus 118 v~~A~Ala--~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~ 175 (712)
..|...+- -+.|||||.++|-|.- +-.++..+.++.+. |.-+||+||..-.
T Consensus 138 ~i~~~rf~~~GiYiLDEPEa~LSp~R------Qlella~l~~la~s-GaQ~IiATHSPiL 190 (233)
T COG3910 138 AIFHNRFNGQGIYILDEPEAALSPSR------QLELLAILRDLADS-GAQIIIATHSPIL 190 (233)
T ss_pred HHHHHHhccCceEEecCccccCCHHH------HHHHHHHHHHHHhc-CCeEEEEecChhh
Confidence 33444444 7999999999999977 78888889999875 9999999998743
No 429
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.50 E-value=1.5e-07 Score=95.94 Aligned_cols=63 Identities=10% Similarity=0.119 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHH-------HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccccc
Q 005138 111 TAFEKQSALFALAVS-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE 182 (712)
Q Consensus 111 ~~ferQrv~~A~Ala-------~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~ 182 (712)
+.+|+..+++|+-+| +++||||+.++||... ++.+.+++.++.+ +.-+|++||+...... +++
T Consensus 138 SgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~------~~~l~~~l~~~~~--~~Q~ii~Th~~~~~~~-a~~ 207 (220)
T PF02463_consen 138 SGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQN------RKRLADLLKELSK--QSQFIITTHNPEMFED-ADK 207 (220)
T ss_dssp -HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHH------HHHHHHHHHHHTT--TSEEEEE-S-HHHHTT--SE
T ss_pred cccccccccccccccccccccccccccccccccccccc------ccccccccccccc--cccccccccccccccc-ccc
Confidence 455888888887776 8899999999999998 9999999999863 5789999999765443 444
No 430
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.44 E-value=4.8e-07 Score=92.00 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHH---HHhhhcccc-----CCCchhhhhChhhHHHHHHHHHHhhC
Q 005138 114 EKQSALFALAVS---DIVLINMWC-----HDIGREQAANKPLLKTVFQVMMRLFS 160 (712)
Q Consensus 114 erQrv~~A~Ala---~iLlLDEP~-----~~LD~~~~a~~~l~~~v~e~l~~L~~ 160 (712)
++++..+|++++ +++++|||| ++||+.. ...+.+.+.++.+
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~------~~~~~~~~~~~~~ 205 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPEL------VAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHH------HHHHHHHHHHHhh
Confidence 788899999998 999999999 9999998 9999999998853
No 431
>PRK13695 putative NTPase; Provisional
Probab=98.40 E-value=4.2e-07 Score=89.58 Aligned_cols=72 Identities=7% Similarity=0.095 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHH---HHhhhccc--cCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccc
Q 005138 111 TAFEKQSALFALAVS---DIVLINMW--CHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVL 185 (712)
Q Consensus 111 ~~ferQrv~~A~Ala---~iLlLDEP--~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~l 185 (712)
..+++-...++.... +++++||| +..+++ .+.+.+.++.+ .+.++|+|+|+.. +...++++..
T Consensus 80 sgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~----------~~~~~l~~~~~-~~~~~i~v~h~~~-~~~~~~~i~~ 147 (174)
T PRK13695 80 EDLERIGIPALERALEEADVIIIDEIGKMELKSP----------KFVKAVEEVLD-SEKPVIATLHRRS-VHPFVQEIKS 147 (174)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEECCCcchhhhH----------HHHHHHHHHHh-CCCeEEEEECchh-hHHHHHHHhc
Confidence 345666666555443 99999995 333332 24555556553 4899999999953 3345778888
Q ss_pred eecCCeEEEe
Q 005138 186 REDIQKIWDS 195 (712)
Q Consensus 186 l~~~G~I~~~ 195 (712)
+.+ |+|..-
T Consensus 148 ~~~-~~i~~~ 156 (174)
T PRK13695 148 RPG-GRVYEL 156 (174)
T ss_pred cCC-cEEEEE
Confidence 888 887543
No 432
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.36 E-value=4.1e-07 Score=98.13 Aligned_cols=143 Identities=12% Similarity=0.046 Sum_probs=79.2
Q ss_pred EEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccccCCCccc-hhccccCCCcccccchhhHHHHHHHHH
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCT-LIMDLEGTDGRERGEDDTAFEKQSALF 120 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~~~~~~~~-~v~d~~g~~~~~r~~~~~~ferQrv~~ 120 (712)
.++|.||+||||||||++|+|.. ++..|-........+... ..+.. ++....+ .+..... ..-++
T Consensus 146 ~ili~G~tGsGKTTll~al~~~~----~~~~~iv~ied~~El~~~--~~~~~~l~~~~~~-----~~~~~~~---~~~~l 211 (308)
T TIGR02788 146 NIIISGGTGSGKTTFLKSLVDEI----PKDERIITIEDTREIFLP--HPNYVHLFYSKGG-----QGLAKVT---PKDLL 211 (308)
T ss_pred EEEEECCCCCCHHHHHHHHHccC----CccccEEEEcCccccCCC--CCCEEEEEecCCC-----CCcCccC---HHHHH
Confidence 99999999999999999999998 555443111100000000 00100 0001000 0000000 11233
Q ss_pred HHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecC
Q 005138 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (712)
Q Consensus 121 A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~ 197 (712)
+.++. +++++|||.+ .++++++..+. ..+.+++.++|..+... ..+|...+.. |++...|.
T Consensus 212 ~~~Lr~~pd~ii~gE~r~-------------~e~~~~l~a~~-~g~~~~i~T~Ha~~~~~-~~~Rl~~l~~-~~~~~~g~ 275 (308)
T TIGR02788 212 QSCLRMRPDRIILGELRG-------------DEAFDFIRAVN-TGHPGSITTLHAGSPEE-AFEQLALMVK-SSQAGLGL 275 (308)
T ss_pred HHHhcCCCCeEEEeccCC-------------HHHHHHHHHHh-cCCCeEEEEEeCCCHHH-HHHHHHHHhh-ccccccCC
Confidence 34444 9999999975 12445555554 21345699999998433 3667766666 88887777
Q ss_pred cccccCCccchhhhcccc
Q 005138 198 KPQAHMETPLSEFFNVEV 215 (712)
Q Consensus 198 ~~e~~~~~~l~d~f~~~~ 215 (712)
+.+.+ ...+...|++-+
T Consensus 276 ~~~~~-~~~i~~~~d~ii 292 (308)
T TIGR02788 276 DFAYI-VKLVREVIDIVV 292 (308)
T ss_pred CHHHH-HHHHHHhCCEEE
Confidence 77665 344556666544
No 433
>PRK00064 recF recombination protein F; Reviewed
Probab=98.34 E-value=1.4e-06 Score=96.07 Aligned_cols=68 Identities=15% Similarity=0.177 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHH------------HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccc-
Q 005138 114 EKQSALFALAVS------------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN- 180 (712)
Q Consensus 114 erQrv~~A~Ala------------~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~- 180 (712)
|++++.+|+.++ +++|+|||+++||+.. +..+++.+.++ +..+++++|+.+.++..+
T Consensus 278 q~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~------~~~l~~~l~~~----~~qv~it~~~~~~~~~~~~ 347 (361)
T PRK00064 278 QQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGR------RAALLERLKGL----GAQVFITTTDLEDLADLLE 347 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHH------HHHHHHHHhcc----CCEEEEEcCChhhhhhhhc
Confidence 999999999884 7999999999999988 88888877654 457899999986655443
Q ss_pred -ccccceecCCeE
Q 005138 181 -LEPVLREDIQKI 192 (712)
Q Consensus 181 -~~~~ll~~~G~I 192 (712)
.+++.+.+ |++
T Consensus 348 ~~~i~~v~~-G~i 359 (361)
T PRK00064 348 NAKIFHVEQ-GKI 359 (361)
T ss_pred cCcEEEEeC-CEE
Confidence 24555555 776
No 434
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.28 E-value=1.1e-06 Score=90.85 Aligned_cols=42 Identities=12% Similarity=0.275 Sum_probs=30.6
Q ss_pred HHhhhccccCCC----chhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCC
Q 005138 126 DIVLINMWCHDI----GREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTR 175 (712)
Q Consensus 126 ~iLlLDEP~~~L----D~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~ 175 (712)
+++++|||++.+ |+.. .+.+++.++++.+. |.|+ ++||+...
T Consensus 119 ~~lVIDe~t~~l~~~~d~~~------~~~l~~~l~~l~~~-g~tv-i~t~~~~~ 164 (230)
T PRK08533 119 DVIIIDSLSSLISNDASEVA------VNDLMAFFKRISSL-NKVI-ILTANPKE 164 (230)
T ss_pred CEEEEECccHHhcCCcchHH------HHHHHHHHHHHHhC-CCEE-EEEecccc
Confidence 779999999987 5444 67788888888654 7755 44666543
No 435
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.24 E-value=1.5e-06 Score=94.84 Aligned_cols=138 Identities=19% Similarity=0.125 Sum_probs=90.3
Q ss_pred ccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeecc----CCee-eccc--------cCC-------Cccch---
Q 005138 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT----KGIW-MARC--------AGI-------EPCTL--- 94 (712)
Q Consensus 38 ~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t----~gi~-~~~~--------~~~-------~~~~~--- 94 (712)
..|++.|++|-||-||||-|++++|-+ +|.-|+.... .++- +++. +.. .+..+
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~----kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~i 173 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQ----KPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQI 173 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCC----CCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHH
Confidence 356699999999999999999999999 8888873211 0100 0000 000 00000
Q ss_pred --------------------------hccccCCCcccccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhCh
Q 005138 95 --------------------------IMDLEGTDGRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANK 145 (712)
Q Consensus 95 --------------------------v~d~~g~~~~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~ 145 (712)
-+++.++-.++. +.....|-||.+||++.. |+.++|||.+-||..+
T Consensus 174 pr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~-~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQ---- 248 (592)
T KOG0063|consen 174 PRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREV-EQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQ---- 248 (592)
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhh-hhcccchhhhhhhhhhhhhhcceeEecCCcccchHHH----
Confidence 001111111111 112233888989998887 9999999999999988
Q ss_pred hhHHHHHHHHHHhhCCCCceEEEEecCCCCccccccccccee
Q 005138 146 PLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRE 187 (712)
Q Consensus 146 ~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~ 187 (712)
+..--..++.+... ..-+|+|.||++....+.|-+.++-
T Consensus 249 --RLkaA~~IRsl~~p-~~YiIVVEHDLsVLDylSDFiCcLY 287 (592)
T KOG0063|consen 249 --RLKAAITIRSLINP-DRYIIVVEHDLSVLDYLSDFICCLY 287 (592)
T ss_pred --hhhHHHHHHHhhCC-CCeEEEEEeechHHHhhhcceeEEe
Confidence 66677778888765 7889999999998776666555553
No 436
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.22 E-value=8.3e-07 Score=89.33 Aligned_cols=57 Identities=11% Similarity=0.097 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHH------HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCC
Q 005138 112 AFEKQSALFALAVS------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTR 175 (712)
Q Consensus 112 ~ferQrv~~A~Ala------~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~ 175 (712)
.++++.+.++..+. .++++|||.++|.|.. ++.+++.+..+.+ .+.-+|++||....
T Consensus 239 ~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~------q~~l~~~l~~~~~-~~~QviitTHSp~i 301 (303)
T PF13304_consen 239 SGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSW------QRKLIELLKELSK-KNIQVIITTHSPFI 301 (303)
T ss_dssp HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHH------HHHHHHHHHHTGG-GSSEEEEEES-GGG
T ss_pred HHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHH------HHHHHHHHHhhCc-cCCEEEEeCccchh
Confidence 34677766666666 5699999999999988 9999999988765 47899999998653
No 437
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.13 E-value=1.5e-06 Score=79.09 Aligned_cols=34 Identities=24% Similarity=0.239 Sum_probs=31.5
Q ss_pred ccccccccccccccccccccEEEEEcCCCCChhHHHHHHh
Q 005138 22 SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLF 61 (712)
Q Consensus 22 ~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~ 61 (712)
.+|+++++++..|+ +++|+||||||||||++++.
T Consensus 3 ~aL~~vsl~i~~ge------~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 3 TSLHGVLVDVYGKV------GVLITGDSGIGKTELALELI 36 (107)
T ss_pred eEEEeeEEEEcCCE------EEEEEcCCCCCHHHHHHHhh
Confidence 36899999999999 99999999999999999976
No 438
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.05 E-value=2.3e-06 Score=95.86 Aligned_cols=39 Identities=26% Similarity=0.336 Sum_probs=34.5
Q ss_pred cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCC
Q 005138 23 GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKG 73 (712)
Q Consensus 23 ~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG 73 (712)
+|+++++++..|+ +++|+|||||||||||+ .|+. .|++|
T Consensus 21 vL~~Vsl~i~~GE------iv~L~G~SGsGKSTLLr--~~l~----~~~sG 59 (504)
T TIGR03238 21 ILVKFNKELPSSS------LLFLCGSSGDGKSEILA--ENKR----KFSEG 59 (504)
T ss_pred HHhCCceeecCCC------EEEEECCCCCCHHHHHh--cCCC----CCCCC
Confidence 6899999999999 99999999999999999 6666 56655
No 439
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.04 E-value=1.4e-05 Score=90.05 Aligned_cols=156 Identities=16% Similarity=0.084 Sum_probs=84.0
Q ss_pred ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeecc--CCee----ecccc---CCCcc
Q 005138 22 SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT--KGIW----MARCA---GIEPC 92 (712)
Q Consensus 22 ~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t--~gi~----~~~~~---~~~~~ 92 (712)
.+++.+ +.+..|+ .++|+|+||+|||||+++|+|.. +++.|....- +|.. ..... +....
T Consensus 152 ~~iD~l-~~i~~Gq------~~~I~G~sG~GKStLl~~I~~~~----~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~t 220 (440)
T TIGR01026 152 RSIDGL-LTVGKGQ------RIGIFAGSGVGKSTLLGMIARNT----EADVNVIALIGERGREVREFIEHDLGEEGLKRS 220 (440)
T ss_pred eeeeec-cccCCCc------EEEEECCCCCCHHHHHHHHhCCC----CCCEEEEEEEeecchHHHHHHHHHhcccccceE
Confidence 356667 8888888 99999999999999999999987 6655431100 0000 00000 00111
Q ss_pred chhccccCCCcccccch-------hhHH--HHHH--------HHHHHHHHHH-hhhcccc--CCCchhhhhChhhHHHHH
Q 005138 93 TLIMDLEGTDGRERGED-------DTAF--EKQS--------ALFALAVSDI-VLINMWC--HDIGREQAANKPLLKTVF 152 (712)
Q Consensus 93 ~~v~d~~g~~~~~r~~~-------~~~f--erQr--------v~~A~Ala~i-LlLDEP~--~~LD~~~~a~~~l~~~v~ 152 (712)
.++......++.++... ...| |.+. .-+|.|.-++ +.+.||- .|.+|.. ...+.
T Consensus 221 vvv~~~~d~~p~~r~~~~~~a~t~AE~frd~G~~Vll~~DslTr~A~A~REisl~~ge~P~~~Gypp~~------~~~l~ 294 (440)
T TIGR01026 221 VVVVATSDQSPLLRLKGAYVATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYTPSV------FSTLP 294 (440)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEeChHHHHHHHHHHHHhcCCCCcccccChhH------HHHHH
Confidence 11111111111110000 0000 1111 1233444332 2345542 3455544 66677
Q ss_pred HHHHHhhCCCCc-------eEEEEecCCCCcccccccccceecCCeEEEecCc
Q 005138 153 QVMMRLFSPRKT-------TLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (712)
Q Consensus 153 e~l~~L~~~~g~-------tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~ 198 (712)
+++.+.... +. ||++.+||+. ..+++.+..+.+ |+|+.+...
T Consensus 295 ~l~ERag~~-~~GSIT~i~tVl~~~~d~~--dpi~d~~~~i~d-G~ivLsr~l 343 (440)
T TIGR01026 295 RLLERAGAS-GKGSITAFYTVLVEGDDMN--EPIADSVRGILD-GHIVLSRAL 343 (440)
T ss_pred HHHHHhccC-CCCeeeEEEEEEccCcCCC--cchhhhhccccc-eEEEEecch
Confidence 777776543 56 8888899984 335778888888 999987764
No 440
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.02 E-value=7e-06 Score=91.89 Aligned_cols=158 Identities=14% Similarity=0.080 Sum_probs=91.3
Q ss_pred cEEEEeeeeeec--cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccc
Q 005138 9 STQLIDGDGTFN--VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC 86 (712)
Q Consensus 9 ~I~l~~l~k~y~--~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~ 86 (712)
.++...++..|. ..+++. .+.+..|+ .++|+|++|+|||||+++|+|.. .++.|.+. +.+.
T Consensus 130 ~~~r~~i~~~l~TGiraID~-ll~I~~Gq------ri~I~G~sG~GKTtLl~~Ia~~~----~~~~gvI~------~iGe 192 (432)
T PRK06793 130 AFEREEITDVFETGIKSIDS-MLTIGIGQ------KIGIFAGSGVGKSTLLGMIAKNA----KADINVIS------LVGE 192 (432)
T ss_pred chheechhhccCCCCEEEec-cceecCCc------EEEEECCCCCChHHHHHHHhccC----CCCeEEEE------eCCC
Confidence 355666666663 234555 58888888 99999999999999999999988 66655421 1111
Q ss_pred cCCCccchhc---cccCCCcc---cccchhhHHHHHHHHHHH-HHH---------HHhhhccccCCCchhhhhChhhHHH
Q 005138 87 AGIEPCTLIM---DLEGTDGR---ERGEDDTAFEKQSALFAL-AVS---------DIVLINMWCHDIGREQAANKPLLKT 150 (712)
Q Consensus 87 ~~~~~~~~v~---d~~g~~~~---~r~~~~~~ferQrv~~A~-Ala---------~iLlLDEP~~~LD~~~~a~~~l~~~ 150 (712)
.+.+..-++. ...|+... ....+....+|.++..+. ++| -+|++|++|...++ .++
T Consensus 193 rg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A--------~re 264 (432)
T PRK06793 193 RGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADA--------RRS 264 (432)
T ss_pred CcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHH--------HHH
Confidence 1111111111 11121110 011233456777766554 444 46788999998776 345
Q ss_pred HHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecC
Q 005138 151 VFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (712)
Q Consensus 151 v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~ 197 (712)
+-..+.+.-.. |.+..+.+| + +.++.|...... |.|....+
T Consensus 265 isl~~~e~p~~-G~~~~~~s~-l---~~L~ERag~~~~-GSiT~~~t 305 (432)
T PRK06793 265 VDIAVKELPIG-GKTLLMESY-M---KKLLERSGKTQK-GSITGIYT 305 (432)
T ss_pred HHHHhcCCCCC-Ceeeeeecc-c---hhHHHHhccCCC-cceEEEEE
Confidence 55455555433 777777777 3 333334333444 88876554
No 441
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.02 E-value=7.3e-06 Score=78.00 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
++.|.||+|+|||||++.+++..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999987
No 442
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.00 E-value=4.5e-06 Score=82.43 Aligned_cols=58 Identities=9% Similarity=-0.068 Sum_probs=40.0
Q ss_pred HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCC---------ccccccccccee
Q 005138 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTR---------TPLENLEPVLRE 187 (712)
Q Consensus 126 ~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~---------~~~~~~~~~ll~ 187 (712)
+++++|+|++.+|.. .......+.+++..+.+. |+|+|+++|+... +..+||.++.+.
T Consensus 97 ~~lviD~~~~~~~~~---~~~~~~~i~~l~~~l~~~-g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 97 KRVVIDSVSGLLLME---QSTARLEIRRLLFALKRF-GVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred CEEEEeCcHHHhhcC---hHHHHHHHHHHHHHHHHC-CCEEEEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence 889999999988821 011256677777777654 9999999998764 344555555554
No 443
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=97.96 E-value=1.1e-05 Score=98.02 Aligned_cols=124 Identities=17% Similarity=0.162 Sum_probs=66.5
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccccCCCccchhccccCCCcccccchhhHHHHHHH
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSA 118 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~~~~~~~~~v~d~~g~~~~~r~~~~~~ferQrv 118 (712)
++.++.|.|||++||||+|+.++-..+ -+..|...+-....+ +..+.++ -..|...... ...+.|+....
T Consensus 606 ~~~~~iiTGpN~~GKSt~lr~v~l~~i---lAq~G~~VPa~~a~i----~~~d~I~--triga~d~i~-~g~STF~~E~~ 675 (854)
T PRK05399 606 ERRLLLITGPNMAGKSTYMRQVALIVL---LAQIGSFVPAESARI----GIVDRIF--TRIGASDDLA-SGRSTFMVEMT 675 (854)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHH---HHhcCCceeccceEe----cccCeee--eccCcccccc-cCcccHHHHHH
Confidence 345999999999999999999865531 123343222221111 1111111 1112111111 12356765555
Q ss_pred HHHHHHH-----HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcc
Q 005138 119 LFALAVS-----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (712)
Q Consensus 119 ~~A~Ala-----~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~ 177 (712)
.++..+. .++|+|||..|-++.. + ......++..+.+..|+++||+||+.+...
T Consensus 676 ~~~~il~~at~~sLvllDE~GrGTs~~d--g---~aia~aile~l~~~~~~~~l~aTH~~el~~ 734 (854)
T PRK05399 676 ETANILNNATERSLVLLDEIGRGTSTYD--G---LSIAWAVAEYLHDKIGAKTLFATHYHELTE 734 (854)
T ss_pred HHHHHHHhCCCCcEEEEecCCCCCCcch--h---HHHHHHHHHHHHhcCCceEEEEechHHHHH
Confidence 5555554 8999999944433322 1 222333444444433689999999976543
No 444
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=97.91 E-value=7.6e-06 Score=95.42 Aligned_cols=72 Identities=11% Similarity=0.089 Sum_probs=62.6
Q ss_pred chhhHHHHHHHHHHHHHH-------HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccc
Q 005138 108 EDDTAFEKQSALFALAVS-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN 180 (712)
Q Consensus 108 ~~~~~ferQrv~~A~Ala-------~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~ 180 (712)
.....+|+||+++|++++ +++|+|||++|||+.. ...+.+.+.++.+ +.+||+|||++..+. .|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~------~~~~~~~l~~l~~--~~~vi~iTH~~~~~~-~a 509 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGET------AQAIAKKLAQLSE--RHQVLCVTHLPQVAA-HA 509 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHH------HHHHHHHHHHHhc--CCEEEEEEChHHHHH-hc
Confidence 345778999999999887 4999999999999998 8999999999863 799999999998775 68
Q ss_pred ccccceec
Q 005138 181 LEPVLRED 188 (712)
Q Consensus 181 ~~~~ll~~ 188 (712)
++++++..
T Consensus 510 d~~~~l~k 517 (563)
T TIGR00634 510 DAHFKVEK 517 (563)
T ss_pred CeEEEEEE
Confidence 88888876
No 445
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.88 E-value=2.1e-05 Score=81.26 Aligned_cols=73 Identities=7% Similarity=-0.024 Sum_probs=42.1
Q ss_pred HHHHHHHHHHH-----HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecC
Q 005138 115 KQSALFALAVS-----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDI 189 (712)
Q Consensus 115 rQrv~~A~Ala-----~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~ 189 (712)
.+.+....... +++++|+|++.++... ......++..+..+.+ .|.|+++++|+.......+.+...+.+
T Consensus 106 ~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~---~~~~~~~l~~l~~l~~-~g~tvllt~~~~~~~~~~~~~~~~l~D- 180 (234)
T PRK06067 106 NKLLELIIEFIKSKREDVIIIDSLTIFATYAE---EDDILNFLTEAKNLVD-LGKTILITLHPYAFSEELLSRIRSICD- 180 (234)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecHHHHHhcCC---HHHHHHHHHHHHHHHh-CCCEEEEEecCCcCCHHHHHHHHhheE-
Confidence 34555554444 6899999996544322 1114555555666555 489999999987654333333333334
Q ss_pred CeE
Q 005138 190 QKI 192 (712)
Q Consensus 190 G~I 192 (712)
|.|
T Consensus 181 gvI 183 (234)
T PRK06067 181 VYL 183 (234)
T ss_pred EEE
Confidence 444
No 446
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.85 E-value=9.8e-06 Score=84.87 Aligned_cols=67 Identities=6% Similarity=-0.043 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCC
Q 005138 114 EKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQ 190 (712)
Q Consensus 114 erQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G 190 (712)
.+|++.+|+++. .|++| ||..+|.....+++ + +..+.. .+.|.|+++|++..... ++.+.++.. |
T Consensus 142 ~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~----i---~~~~~~-~~~~~ivls~~la~~~~-~paI~vl~s-~ 209 (249)
T cd01128 142 PKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDV----I---FEEFKG-TGNMELVLDRRLAERRI-FPAIDILKS-G 209 (249)
T ss_pred hHHHHHHhcCCCCCCceEEe--eeheecCCCcccch----H---HHHHhc-CCCcEEEEchHHhhCCC-CCeEEEcCC-C
Confidence 489999999973 89988 99999864411111 2 222222 47799999999976653 677888877 7
Q ss_pred eE
Q 005138 191 KI 192 (712)
Q Consensus 191 ~I 192 (712)
.+
T Consensus 210 sr 211 (249)
T cd01128 210 TR 211 (249)
T ss_pred Cc
Confidence 76
No 447
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.83 E-value=1.6e-05 Score=99.18 Aligned_cols=75 Identities=9% Similarity=0.063 Sum_probs=66.6
Q ss_pred cchhhHHHHHHHHHHHHHH-------------HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCC
Q 005138 107 GEDDTAFEKQSALFALAVS-------------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDK 173 (712)
Q Consensus 107 ~~~~~~ferQrv~~A~Ala-------------~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl 173 (712)
....+++|++++.||+|++ ++|||||||++||+.. +..++++|.++.. .|.+|+||||++
T Consensus 948 ~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~------~~~~~~~l~~l~~-~g~~i~iisH~~ 1020 (1042)
T TIGR00618 948 SATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDS------LDRAIGILDAIRE-GSKMIGIISHVP 1020 (1042)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHH------HHHHHHHHHHHHh-CCCEEEEEeCcH
Confidence 3456788999999999885 4889999999999999 9999999999976 599999999999
Q ss_pred CCcccccccccceec
Q 005138 174 TRTPLENLEPVLRED 188 (712)
Q Consensus 174 ~~~~~~~~~~~ll~~ 188 (712)
+....+++++.|+..
T Consensus 1021 ~~~~~~~~~i~v~~~ 1035 (1042)
T TIGR00618 1021 EFRERIPHRILVKKT 1035 (1042)
T ss_pred HHHHhhCCEEEEEEC
Confidence 999888999888865
No 448
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.83 E-value=8.8e-05 Score=67.62 Aligned_cols=25 Identities=40% Similarity=0.485 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccc
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+..+.|+||+|+|||||++.|.+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc
Confidence 3489999999999999999999988
No 449
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=97.81 E-value=3.5e-05 Score=80.07 Aligned_cols=123 Identities=15% Similarity=0.165 Sum_probs=60.7
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccccCCCccchhccccCCCcccccchhhHHHHHHHH
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSAL 119 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~~~~~~~~~v~d~~g~~~~~r~~~~~~ferQrv~ 119 (712)
+.++.|.|||.+||||+||.+.=..+ -..-|-..+-....+. ..+.++. .....+.... ....|+.....
T Consensus 43 ~~~~iiTGpN~sGKSt~lk~i~~~~i---laq~G~~VPA~~~~i~----~~d~I~t-~~~~~d~~~~--~~S~F~~E~~~ 112 (235)
T PF00488_consen 43 SRIIIITGPNMSGKSTFLKQIGLIVI---LAQIGCFVPAESAEIP----IFDRIFT-RIGDDDSIES--GLSTFMAEMKR 112 (235)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHHH---HHTTT--BSSSEEEEE------SEEEE-EES---SSTT--SSSHHHHHHHH
T ss_pred eeEEEEeCCCccchhhHHHHHHHHhh---hhhcCceeeecccccc----cccEEEe-eccccccccc--ccccHHHhHHH
Confidence 35899999999999999999865431 1122332222111110 0000000 0000111111 12444332222
Q ss_pred HHHHH--H---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcc
Q 005138 120 FALAV--S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (712)
Q Consensus 120 ~A~Al--a---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~ 177 (712)
++..+ + .++|+||+..|-.+..+ ..+...+++.+. ++.+..+|++||+.+...
T Consensus 113 ~~~il~~~~~~sLvliDE~g~gT~~~eg--~ai~~aile~l~---~~~~~~~i~~TH~~~l~~ 170 (235)
T PF00488_consen 113 LSSILRNATEKSLVLIDELGRGTNPEEG--IAIAIAILEYLL---EKSGCFVIIATHFHELAE 170 (235)
T ss_dssp HHHHHHH--TTEEEEEESTTTTSSHHHH--HHHHHHHHHHHH---HTTT-EEEEEES-GGGGG
T ss_pred HHhhhhhcccceeeecccccCCCChhHH--HHHHHHHHHHHH---HhccccEEEEeccchhHH
Confidence 22222 2 78999999998877652 223333443333 324788999999997654
No 450
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.74 E-value=4.8e-05 Score=76.86 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
++.|.||+||||||+++.|.+..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999998876
No 451
>PRK10869 recombination and repair protein; Provisional
Probab=97.72 E-value=2.9e-05 Score=90.27 Aligned_cols=72 Identities=13% Similarity=0.010 Sum_probs=61.8
Q ss_pred chhhHHHHHHHHHHHHHH-------HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccc
Q 005138 108 EDDTAFEKQSALFALAVS-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN 180 (712)
Q Consensus 108 ~~~~~ferQrv~~A~Ala-------~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~ 180 (712)
...+.+|+||+++|++++ +++|+|||++|||+.. ...+.+.+.++.+ +.+||+|||++..+ ..|
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~------~~~v~~~l~~l~~--~~qvi~iTH~~~~~-~~a 499 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPT------AAVVGKLLRQLGE--STQVMCVTHLPQVA-GCG 499 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHH------HHHHHHHHHHHhc--CCEEEEEecCHHHH-HhC
Confidence 345778999999999998 5999999999999998 8899999999853 68999999999866 468
Q ss_pred ccccceec
Q 005138 181 LEPVLRED 188 (712)
Q Consensus 181 ~~~~ll~~ 188 (712)
++.+++..
T Consensus 500 d~~~~v~k 507 (553)
T PRK10869 500 HQHFFVSK 507 (553)
T ss_pred CEEEEEec
Confidence 88777765
No 452
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.67 E-value=2.9e-05 Score=77.59 Aligned_cols=40 Identities=28% Similarity=0.233 Sum_probs=32.7
Q ss_pred cccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCe
Q 005138 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGR 74 (712)
Q Consensus 25 ~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~ 74 (712)
.-+.+.+..|. .++|+||||||||||+++|.|+. +|..|.
T Consensus 16 ~~l~~~v~~g~------~i~I~G~tGSGKTTll~aL~~~i----~~~~~~ 55 (186)
T cd01130 16 AYLWLAVEARK------NILISGGTGSGKTTLLNALLAFI----PPDERI 55 (186)
T ss_pred HHHHHHHhCCC------EEEEECCCCCCHHHHHHHHHhhc----CCCCCE
Confidence 34555667777 99999999999999999999998 666554
No 453
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=97.62 E-value=0.00016 Score=88.01 Aligned_cols=61 Identities=2% Similarity=-0.018 Sum_probs=46.5
Q ss_pred HHhhhccccCCC-chhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcc---------cccccccceecCCeEEE
Q 005138 126 DIVLINMWCHDI-GREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP---------LENLEPVLREDIQKIWD 194 (712)
Q Consensus 126 ~iLlLDEP~~~L-D~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~---------~~~~~~~ll~~~G~I~~ 194 (712)
.++++|||..+| |+.. .+.+.+.++++.+. |.+++++||+++.+. ..|+..+++.+ |++..
T Consensus 654 ~illlDE~~~~L~d~~~------~~~i~~~lk~~RK~-~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n-~~a~~ 724 (818)
T PRK13830 654 SLIILDEAWLMLGHPVF------RDKIREWLKVLRKA-NCAVVLATQSISDAERSGIIDVLKESCPTKICLPN-GAARE 724 (818)
T ss_pred cEEEEECchhhcCCHHH------HHHHHHHHHHHHHc-CCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCC-ccccc
Confidence 678999999999 5776 88888888888764 899999999997654 34555555555 55543
No 454
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.61 E-value=4.5e-05 Score=94.97 Aligned_cols=87 Identities=14% Similarity=0.101 Sum_probs=66.3
Q ss_pred hccccCCCcccccchhhHHHHHHHHHHHHHH-----------HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCC
Q 005138 95 IMDLEGTDGRERGEDDTAFEKQSALFALAVS-----------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRK 163 (712)
Q Consensus 95 v~d~~g~~~~~r~~~~~~ferQrv~~A~Ala-----------~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g 163 (712)
++|..+..........+++|+++++||+||+ ++||+||||++||+.. +..++++|..+.+. |
T Consensus 935 ~~d~~~~~~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~------~~~~~~~l~~l~~~-g 1007 (1047)
T PRK10246 935 VVDTWQADAVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSET------LDTALDALDALNAS-G 1007 (1047)
T ss_pred eeehhccCCCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHH------HHHHHHHHHHHHHC-C
Confidence 4454433232334556888999999999986 6799999999999999 99999999999765 9
Q ss_pred ceEEEEecCCCCcccccccccceec
Q 005138 164 TTLMFVIRDKTRTPLENLEPVLRED 188 (712)
Q Consensus 164 ~tiL~VtHDl~~~~~~~~~~~ll~~ 188 (712)
++|+||||.......+..++.|...
T Consensus 1008 ~~v~iisH~~~l~~~i~~qi~V~k~ 1032 (1047)
T PRK10246 1008 KTIGVISHVEAMKERIPVQIKVKKI 1032 (1047)
T ss_pred CEEEEEecHHHHHHhccceEEEEEC
Confidence 9999999976665555555555543
No 455
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.60 E-value=5.2e-05 Score=88.18 Aligned_cols=74 Identities=12% Similarity=0.167 Sum_probs=60.2
Q ss_pred hhhHHHHHHHHHHHHHH-------------HHhhhcccc-CCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCC
Q 005138 109 DDTAFEKQSALFALAVS-------------DIVLINMWC-HDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKT 174 (712)
Q Consensus 109 ~~~~ferQrv~~A~Ala-------------~iLlLDEP~-~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~ 174 (712)
..+.+|+||+++|++++ +++|+|||+ ++||+.. ...+++.+.++ . |.+||+|||+..
T Consensus 468 ~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~------~~~~~~~l~~~--~-~~~iiiish~~~ 538 (562)
T PHA02562 468 SFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEG------TKALLSILDSL--K-DTNVFVISHKDH 538 (562)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhH------HHHHHHHHHhC--C-CCeEEEEECchh
Confidence 34667999999998874 799999998 7899998 89999999988 3 789999999976
Q ss_pred CcccccccccceecCCeE
Q 005138 175 RTPLENLEPVLREDIQKI 192 (712)
Q Consensus 175 ~~~~~~~~~~ll~~~G~I 192 (712)
.. ..+++++++...|+.
T Consensus 539 ~~-~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 539 DP-QKFDRHLKMEKVGRF 555 (562)
T ss_pred ch-hhhhcEEEEEEECCe
Confidence 54 457888777764543
No 456
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.54 E-value=6.9e-05 Score=61.52 Aligned_cols=23 Identities=48% Similarity=0.612 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
++.|.|||||||||||.+|.=+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999987766
No 457
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=97.50 E-value=0.00011 Score=82.50 Aligned_cols=56 Identities=20% Similarity=0.129 Sum_probs=46.0
Q ss_pred ccEEEEeeeeeec--cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCe
Q 005138 8 CSTQLIDGDGTFN--VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGR 74 (712)
Q Consensus 8 ~~I~l~~l~k~y~--~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~ 74 (712)
..++..++++.|. ..+++.+ ..+..|+ +++|+||+|+||||||++|+|+. +|+.|.
T Consensus 138 ~~~~r~~v~~~l~TGi~aID~L-~~I~~Gq------ri~I~G~SGsGKTTLL~~Ia~l~----~pd~gv 195 (450)
T PRK06002 138 PAMTRARVETGLRTGVRVIDIF-TPLCAGQ------RIGIFAGSGVGKSTLLAMLARAD----AFDTVV 195 (450)
T ss_pred CCeEeecceEEcCCCcEEeeee-ceecCCc------EEEEECCCCCCHHHHHHHHhCCC----CCCeee
Confidence 4688999999994 3456666 4788888 99999999999999999999998 666554
No 458
>COG1159 Era GTPase [General function prediction only]
Probab=97.50 E-value=0.00021 Score=75.53 Aligned_cols=123 Identities=21% Similarity=0.275 Sum_probs=73.5
Q ss_pred ccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccccCCCccchhccccCCCcccccchhhHHHHHH
Q 005138 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQS 117 (712)
Q Consensus 38 ~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~~~~~~~~~v~d~~g~~~~~r~~~~~~ferQr 117 (712)
.+..+|||+|+..+|||||||.|.|...+ ..|-..|||+.....-....+..+++.|+.|+....+ ....++.+-
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~Kis---IvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~--~l~~~m~~~ 78 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKIS---IVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKH--ALGELMNKA 78 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceE---eecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcch--HHHHHHHHH
Confidence 34458999999999999999999998753 3444456665322211112246677789999876632 223445555
Q ss_pred HHHHHHHHHHhhhcc-ccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCc
Q 005138 118 ALFALAVSDIVLINM-WCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT 176 (712)
Q Consensus 118 v~~A~Ala~iLlLDE-P~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~ 176 (712)
+--++.=+|++++=- .+.+.++. -+.+++.+++ .++.+|++..-.+.+
T Consensus 79 a~~sl~dvDlilfvvd~~~~~~~~-------d~~il~~lk~----~~~pvil~iNKID~~ 127 (298)
T COG1159 79 ARSALKDVDLILFVVDADEGWGPG-------DEFILEQLKK----TKTPVILVVNKIDKV 127 (298)
T ss_pred HHHHhccCcEEEEEEeccccCCcc-------HHHHHHHHhh----cCCCeEEEEEccccC
Confidence 554444447666532 22334443 4556666655 244566666655544
No 459
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.43 E-value=9.7e-05 Score=73.71 Aligned_cols=25 Identities=36% Similarity=0.541 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccc
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
|.+++|+||||||||||+++|++..
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3499999999999999999999987
No 460
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.43 E-value=8.1e-05 Score=75.53 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=24.7
Q ss_pred ccccEEEEEcCCCCChhHHHHHHhccc
Q 005138 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 38 ~~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.+|.+++|.||||||||||++.|.|+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356699999999999999999999987
No 461
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=97.41 E-value=0.00027 Score=70.91 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
-++|+|+.|+|||||+|.|+|..
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~ 24 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGRE 24 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCC
Confidence 47999999999999999999976
No 462
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.41 E-value=0.00011 Score=73.07 Aligned_cols=26 Identities=23% Similarity=0.195 Sum_probs=24.1
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccc
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.|++++|+|+||||||||+++|+|+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 35699999999999999999999988
No 463
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=97.37 E-value=0.00021 Score=86.88 Aligned_cols=123 Identities=15% Similarity=0.122 Sum_probs=66.8
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccccCCCccchhccccCCCcccccchhhHHHHHHHH
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSAL 119 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~~~~~~~~~v~d~~g~~~~~r~~~~~~ferQrv~ 119 (712)
..++.|.|||.+||||+||.++=..+ =...|...+-....+ +..+.++ -+....+....+ .+.|+-...-
T Consensus 592 ~~~~iITGPNmgGKSt~lrqvali~i---mAq~G~~VPA~~a~i----~~~D~If-trig~~d~i~~g--~STF~~Em~e 661 (840)
T TIGR01070 592 RRMLLITGPNMGGKSTYMRQTALIAL---LAQIGSFVPAESAEL----PLFDRIF-TRIGASDDLASG--RSTFMVEMTE 661 (840)
T ss_pred ccEEEEECCCCCCchHHHHHHHHHHH---HHhcCCCccchheEe----ccccEEE-EecCcccchhcC--cchHHHHHHH
Confidence 45899999999999999998753321 122343222211111 1111000 011111122222 2556444444
Q ss_pred HHHHHH-----HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcc
Q 005138 120 FALAVS-----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (712)
Q Consensus 120 ~A~Ala-----~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~ 177 (712)
+|..+- .++|+||+..|-++.. +..+...+.+.+.+ ..|..+||+||.++.+.
T Consensus 662 ~a~IL~~at~~sLvllDE~GrGT~~~d--g~aia~ai~e~l~~---~~~~~~~~~TH~~eL~~ 719 (840)
T TIGR01070 662 AANILHNATENSLVLFDEIGRGTSTYD--GLALAWAIAEYLHE---HIRAKTLFATHYFELTA 719 (840)
T ss_pred HHHHHhhCCCCEEEEEccCCCCCChhH--HHHHHHHHHHHHHh---cCCCEEEEEcCchHHHH
Confidence 444443 8999999988877764 22334444444443 24789999999987543
No 464
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.36 E-value=0.00066 Score=67.31 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.|+|+|++|+|||||+|.|.|-.
T Consensus 26 ~v~ivG~~~~GKSsli~~l~~~~ 48 (196)
T PRK00454 26 EIAFAGRSNVGKSSLINALTNRK 48 (196)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999853
No 465
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.34 E-value=0.00012 Score=76.06 Aligned_cols=48 Identities=13% Similarity=0.238 Sum_probs=33.9
Q ss_pred HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCC
Q 005138 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKT 174 (712)
Q Consensus 126 ~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~ 174 (712)
+++|+| |++.+......++.....+++.+.++.++.|+++|+++|..-
T Consensus 113 ~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 113 DLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred CEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 899999 876541111111233777888888888777999999999873
No 466
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.34 E-value=0.00013 Score=75.20 Aligned_cols=32 Identities=31% Similarity=0.322 Sum_probs=27.4
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccccCccCCCCCe
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGR 74 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~ 74 (712)
+..++||.||||||||||+++|.|+. .+..|.
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l----~~~~g~ 63 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALL----QQDGEL 63 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh----hhccCC
Confidence 34599999999999999999999998 555554
No 467
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=97.32 E-value=0.00028 Score=72.02 Aligned_cols=117 Identities=16% Similarity=0.201 Sum_probs=57.0
Q ss_pred EEEEEcCCCCChhHHHHHHhccccCccCCCCCe--eeccCCeeeccccCCCccchhccccCCCcccccchhhHHHHHHHH
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGR--SQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSAL 119 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~--~~~t~gi~~~~~~~~~~~~~v~d~~g~~~~~r~~~~~~ferQrv~ 119 (712)
-+.|+|++||||||+.|.|.|-. ...++. ...|..............+.|.|.+|+........ ... +.+.
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~----~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~--~~~-~~i~ 74 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKE----VFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDE--EII-REIK 74 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-----SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHH--HHH-HHHH
T ss_pred EEEEECCCCCCHHHHHHHHhccc----ceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHH--HHH-HHHH
Confidence 37899999999999999999987 222221 11222211111111124456789998754432211 111 1111
Q ss_pred HHHHHH----HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCC--CCceEEEEecC
Q 005138 120 FALAVS----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP--RKTTLMFVIRD 172 (712)
Q Consensus 120 ~A~Ala----~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~--~g~tiL~VtHD 172 (712)
-+..+. .++|+=-|...+... -+.+++.+.+++.+ .+.++|+.||.
T Consensus 75 ~~l~~~~~g~ha~llVi~~~r~t~~-------~~~~l~~l~~~FG~~~~k~~ivvfT~~ 126 (212)
T PF04548_consen 75 RCLSLCSPGPHAFLLVIPLGRFTEE-------DREVLELLQEIFGEEIWKHTIVVFTHA 126 (212)
T ss_dssp HHHHHTTT-ESEEEEEEETTB-SHH-------HHHHHHHHHHHHCGGGGGGEEEEEEEG
T ss_pred HHHHhccCCCeEEEEEEecCcchHH-------HHHHHHHHHHHccHHHHhHhhHHhhhc
Confidence 112222 344443444444332 55677777777754 24566666764
No 468
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.30 E-value=0.00019 Score=72.32 Aligned_cols=26 Identities=31% Similarity=0.556 Sum_probs=23.9
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccc
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+|.+++|+||+|||||||+++|.+..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45699999999999999999999976
No 469
>PRK03918 chromosome segregation protein; Provisional
Probab=97.30 E-value=0.00017 Score=88.45 Aligned_cols=73 Identities=10% Similarity=0.038 Sum_probs=57.8
Q ss_pred chhhHHHHHHHHHHH------HHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccc
Q 005138 108 EDDTAFEKQSALFAL------AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPL 178 (712)
Q Consensus 108 ~~~~~ferQrv~~A~------Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~ 178 (712)
...+.+|+++++||+ +++ +++|+||||++||+.. ...+.+++..+... +.++|+||||.+. ..
T Consensus 787 ~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~------~~~l~~~l~~~~~~-~~~iiiith~~~~-~~ 858 (880)
T PRK03918 787 TFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEER------RRKLVDIMERYLRK-IPQVIIVSHDEEL-KD 858 (880)
T ss_pred hhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHH------HHHHHHHHHHHHhc-CCEEEEEECCHHH-HH
Confidence 345677999766654 343 8899999999999998 88999999887654 7899999999874 45
Q ss_pred ccccccceec
Q 005138 179 ENLEPVLRED 188 (712)
Q Consensus 179 ~~~~~~ll~~ 188 (712)
.|++++++..
T Consensus 859 ~~d~~~~l~~ 868 (880)
T PRK03918 859 AADYVIRVSL 868 (880)
T ss_pred hCCeEEEEEe
Confidence 6888887763
No 470
>PRK00098 GTPase RsgA; Reviewed
Probab=97.28 E-value=0.00032 Score=75.52 Aligned_cols=33 Identities=33% Similarity=0.338 Sum_probs=27.9
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccccCccCCCCCee
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS 75 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~ 75 (712)
.+.+++++|+||+|||||+|.|.|.. .+.+|.+
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~----~~~~g~v 195 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDL----ELKTGEI 195 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCc----CCCCcce
Confidence 34599999999999999999999987 5666664
No 471
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.26 E-value=0.00016 Score=92.21 Aligned_cols=67 Identities=15% Similarity=0.228 Sum_probs=56.5
Q ss_pred hhhHHHHH------HHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhC----CCCceEEEEecCCCC
Q 005138 109 DDTAFEKQ------SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFS----PRKTTLMFVIRDKTR 175 (712)
Q Consensus 109 ~~~~ferQ------rv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~----~~g~tiL~VtHDl~~ 175 (712)
....+|+| |+++|++++ ++|+|||||++||+.. ...+.+.+.++.. ..|.+||+||||+++
T Consensus 1199 ~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~------~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~ 1272 (1311)
T TIGR00606 1199 RCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDREN------IESLAHALVEIIKSRSQQRNFQLLVITHDEDF 1272 (1311)
T ss_pred CCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHH------HHHHHHHHHHHHHhhhhccCCeEEEEecCHHH
Confidence 45788999 999999999 9999999999999998 7778777777642 247899999999998
Q ss_pred cccccc
Q 005138 176 TPLENL 181 (712)
Q Consensus 176 ~~~~~~ 181 (712)
+..+|.
T Consensus 1273 ~~~~~~ 1278 (1311)
T TIGR00606 1273 VELLGR 1278 (1311)
T ss_pred HHHHhh
Confidence 876653
No 472
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.26 E-value=0.00035 Score=76.68 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=23.3
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccc
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
++.++.|.||+||||||+|++|.+..
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i 146 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYI 146 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 35699999999999999999999866
No 473
>PRK01156 chromosome segregation protein; Provisional
Probab=97.25 E-value=0.00022 Score=87.70 Aligned_cols=73 Identities=5% Similarity=0.051 Sum_probs=56.4
Q ss_pred hhhHHHHHHHHHH------HHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCC-C-ceEEEEecCCCCcc
Q 005138 109 DDTAFEKQSALFA------LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPR-K-TTLMFVIRDKTRTP 177 (712)
Q Consensus 109 ~~~~ferQrv~~A------~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~-g-~tiL~VtHDl~~~~ 177 (712)
..+.+|++++++| ++++ +++++||||++||+.. ...+.+++....... | .++|+||||++.+.
T Consensus 801 ~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~------~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~ 874 (895)
T PRK01156 801 SLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDR------RTNLKDIIEYSLKDSSDIPQVIMISHHRELLS 874 (895)
T ss_pred cCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHH------HHHHHHHHHHHHHhcCCCCeEEEEECchHHHH
Confidence 4577789998765 4444 8999999999999998 788888887544332 3 48999999998764
Q ss_pred cccccccceec
Q 005138 178 LENLEPVLRED 188 (712)
Q Consensus 178 ~~~~~~~ll~~ 188 (712)
.|++++.+..
T Consensus 875 -~~d~ii~~~~ 884 (895)
T PRK01156 875 -VADVAYEVKK 884 (895)
T ss_pred -hcCeEEEEEe
Confidence 6888877764
No 474
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.24 E-value=0.00019 Score=76.77 Aligned_cols=24 Identities=33% Similarity=0.318 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.+|||.||||||||||+++|.++.
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 499999999999999999999988
No 475
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.23 E-value=0.00025 Score=68.84 Aligned_cols=32 Identities=25% Similarity=0.518 Sum_probs=26.0
Q ss_pred EEEEEcCCCCChhHHHHHHhccccCccCCCCC
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNFREMDAFKG 73 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG 73 (712)
.++|+|++|||||||++.|.|..+....|+.|
T Consensus 16 ~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g 47 (173)
T cd04155 16 RILILGLDNAGKTTILKQLASEDISHITPTQG 47 (173)
T ss_pred EEEEEccCCCCHHHHHHHHhcCCCcccCCCCC
Confidence 69999999999999999999986543345444
No 476
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.23 E-value=0.00049 Score=74.73 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=24.3
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccc
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
++++++++||||+||||++..|++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45699999999999999999999987
No 477
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.18 E-value=0.00076 Score=62.15 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccc
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+..+.|.||.|+|||||++.+.+..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999887
No 478
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.16 E-value=0.00029 Score=69.40 Aligned_cols=25 Identities=36% Similarity=0.570 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccc
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
|.+++|+||||||||||++.|.+..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccC
Confidence 3599999999999999999999976
No 479
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.13 E-value=0.0004 Score=63.40 Aligned_cols=22 Identities=50% Similarity=0.758 Sum_probs=20.5
Q ss_pred EEEEcCCCCChhHHHHHHhccc
Q 005138 43 VSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 43 vaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
|+|+|+.|+|||||+|.|+|..
T Consensus 2 V~iiG~~~~GKSTlin~l~~~~ 23 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGKK 23 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTST
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 7999999999999999999963
No 480
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.13 E-value=0.00048 Score=73.71 Aligned_cols=31 Identities=32% Similarity=0.433 Sum_probs=27.0
Q ss_pred cEEEEEcCCCCChhHHHHHHhccccCccCCCCCee
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS 75 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~ 75 (712)
.+++++|+||+|||||+|.|.|.. .+.+|.+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~----~~~~g~v 192 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL----DLATGEI 192 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh----hccccce
Confidence 489999999999999999999988 5666653
No 481
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.12 E-value=0.001 Score=66.74 Aligned_cols=24 Identities=42% Similarity=0.686 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
..|+|+|++|||||||+|.|.|..
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcch
Confidence 489999999999999999999975
No 482
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.12 E-value=0.00041 Score=65.87 Aligned_cols=20 Identities=35% Similarity=0.597 Sum_probs=18.9
Q ss_pred EEEEcCCCCChhHHHHHHhc
Q 005138 43 VSIMGPQSSGKSTLLNHLFG 62 (712)
Q Consensus 43 vaIiGpNGSGKSTLLn~L~G 62 (712)
|+|+|++|||||||+|.|.|
T Consensus 2 i~l~G~~g~GKTtL~~~l~~ 21 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTN 21 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 78999999999999999993
No 483
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.11 E-value=0.0024 Score=66.64 Aligned_cols=24 Identities=33% Similarity=0.706 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
..++|+|+|||||||||++|+|..
T Consensus 27 p~i~vvG~~~~GKSt~l~~i~g~~ 50 (240)
T smart00053 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (240)
T ss_pred CeEEEEcCCCccHHHHHHHHhCCC
Confidence 369999999999999999999985
No 484
>PRK00089 era GTPase Era; Reviewed
Probab=97.11 E-value=0.00099 Score=71.11 Aligned_cols=63 Identities=27% Similarity=0.324 Sum_probs=37.4
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccccCCCccchhccccCCCcc
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGR 104 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~~~~~~~~~v~d~~g~~~~ 104 (712)
+..+|+|+|+.|||||||+|.|.|-.+.. .+...+++......-.........+.|..|....
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~---vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~ 66 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISI---VSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKP 66 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceee---cCCCCCcccccEEEEEEcCCceEEEEECCCCCCc
Confidence 34489999999999999999999976422 2222233322111000001234567798887543
No 485
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=97.10 E-value=0.00033 Score=78.73 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=33.5
Q ss_pred ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccc
Q 005138 22 SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 22 ~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.+++++ +.+..|+ +++|+|+||+|||||+++|+|..
T Consensus 144 ~aID~l-l~I~~GQ------~igI~G~sGaGKSTLl~~I~g~~ 179 (434)
T PRK07196 144 NAINGL-LTIGKGQ------RVGLMAGSGVGKSVLLGMITRYT 179 (434)
T ss_pred eeccce-EeEecce------EEEEECCCCCCccHHHHHHhccc
Confidence 468888 9999999 99999999999999999999987
No 486
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.09 E-value=0.00034 Score=69.01 Aligned_cols=24 Identities=29% Similarity=0.510 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.+++|+||+|||||||++.|++..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 489999999999999999999986
No 487
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.08 E-value=0.00025 Score=72.94 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
++||.||||||||||++.|.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999987
No 488
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.05 E-value=0.00031 Score=70.54 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+++|.||+|||||||.++|.++.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999986
No 489
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=97.04 E-value=0.00044 Score=77.66 Aligned_cols=54 Identities=22% Similarity=0.204 Sum_probs=44.3
Q ss_pred cEEEEeeeeee--ccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCC
Q 005138 9 STQLIDGDGTF--NVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKG 73 (712)
Q Consensus 9 ~I~l~~l~k~y--~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG 73 (712)
.++...++..| +..+++++ +.+..|+ .++|+|+||+||||||++|+|.. .++.|
T Consensus 129 ~~~r~~v~~~l~tGi~aID~l-l~i~~Gq------rigI~G~sG~GKSTLL~~I~~~~----~~d~~ 184 (433)
T PRK07594 129 AMVRQPITQPLMTGIRAIDSV-ATCGEGQ------RVGIFSAPGVGKSTLLAMLCNAP----DADSN 184 (433)
T ss_pred ceeccCHhheeCCCceeeeee-eecCCCC------EEEEECCCCCCccHHHHHhcCCC----CCCEE
Confidence 46667777777 34568888 9999999 99999999999999999999988 55543
No 490
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=96.99 E-value=0.0014 Score=69.23 Aligned_cols=132 Identities=25% Similarity=0.390 Sum_probs=77.1
Q ss_pred ccccEEEEEcCCCCChhHHHHHHhccc--cCccCCCCCeeeccCCeeeccccC---CCccchhccccCCCcccccchhhH
Q 005138 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN--FREMDAFKGRSQTTKGIWMARCAG---IEPCTLIMDLEGTDGRERGEDDTA 112 (712)
Q Consensus 38 ~~g~ivaIiGpNGSGKSTLLn~L~Gl~--f~~m~p~sG~~~~t~gi~~~~~~~---~~~~~~v~d~~g~~~~~r~~~~~~ 112 (712)
.+-.||+|+|+..+|||.|||.|.|.. |. ...|...+|.|+|+...+. ....++++|.+|+....+.. ..
T Consensus 19 ~~v~vvsi~G~~rtGKSfLln~l~~~~~gF~---~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~~~~~~--~~ 93 (260)
T PF02263_consen 19 QPVAVVSIVGPYRTGKSFLLNQLLGPQSGFS---WGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGDVEQSD--EK 93 (260)
T ss_dssp SBEEEEEEEEETTSSHHHHHHHHCCBSSSSE---SSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTTTTCCC--CH
T ss_pred CCEEEEEeecCCccchHHHHHHHhccccccc---ccCCCCCCCcceeeeecccccccceeEEEecchhccccccCc--cc
Confidence 344599999999999999999999853 21 1222345889999876532 23456789999987633221 12
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCchhhhhChhhHHHHHHHHH-------Hh--hCCCCceEEEEecCCCC
Q 005138 113 FEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMM-------RL--FSPRKTTLMFVIRDKTR 175 (712)
Q Consensus 113 ferQrv~~A~Ala~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~-------~L--~~~~g~tiL~VtHDl~~ 175 (712)
...+-.+++.-++.++|+|- ...+|........+.-.+-+.++ .- ....=..++++.||...
T Consensus 94 ~d~~if~Ls~LLSS~~IyN~-~~~i~~~~l~~L~~~~~l~~~i~~~~~~~~~~~~~~~~fp~l~wlvRDf~~ 164 (260)
T PF02263_consen 94 YDAKIFALSMLLSSVLIYNS-MGNIDEDDLDQLELFTELAKHIRVKYGDSADSEDLGKPFPSLVWLVRDFSL 164 (260)
T ss_dssp HCHHHHHHHHHH-SEEEEEE-CSSSSHHHHHCCHHHHHHHHHHHHTHHHHHHHHCTTTTCEEEEEEEECE-S
T ss_pred ccHHHHHHHHHHhCceeeCC-CCccchhHHHHHHHHHHHHHHHHHhcccccchhhhcccchHHHHHHhhccc
Confidence 22344555666669999984 45566554333332222222221 00 11123468888899864
No 491
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=96.98 E-value=0.0022 Score=71.33 Aligned_cols=145 Identities=20% Similarity=0.210 Sum_probs=84.9
Q ss_pred EEEEEcCCCCChhHHHHHHh-ccccCccCCCCCe--eeccCC-eeeccccC-----CCccchhcccc-CCCcc-cccchh
Q 005138 42 VVSIMGPQSSGKSTLLNHLF-GTNFREMDAFKGR--SQTTKG-IWMARCAG-----IEPCTLIMDLE-GTDGR-ERGEDD 110 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~-Gl~f~~m~p~sG~--~~~t~g-i~~~~~~~-----~~~~~~v~d~~-g~~~~-~r~~~~ 110 (712)
|+.|+|.+--||||||++|- |.. +- -|--|| +.+... +.+.-..| .+-..|+-++. |.+.. -..++.
T Consensus 246 vTlIvGGGyHGKSTLL~Ale~GVY-nH-ipGDGRE~VVT~~~avkirAEDGR~V~~vDISpFI~~LP~g~dT~~FsT~~A 323 (448)
T PF09818_consen 246 VTLIVGGGYHGKSTLLEALERGVY-NH-IPGDGREFVVTDPDAVKIRAEDGRSVEGVDISPFINNLPGGKDTTCFSTENA 323 (448)
T ss_pred EEEEECCCCccHHHHHHHHHhccc-CC-CCCCCceEEEECCCceEEEecCCceEeCccchHHHhhCCCCCCCCcccccCC
Confidence 99999999999999999996 654 11 133455 222222 22221111 11111222221 12111 111333
Q ss_pred hHHHHHHHHHHHHHH---HHhhhccccCCCc-----hhhhh----ChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccc
Q 005138 111 TAFEKQSALFALAVS---DIVLINMWCHDIG-----REQAA----NKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPL 178 (712)
Q Consensus 111 ~~ferQrv~~A~Ala---~iLlLDEP~~~LD-----~~~~a----~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~ 178 (712)
+.-.-|-+.|.-|+- ++||+||=|++-- ..--. ...=..-+.+.++.|.++.|++.|+|.--.+.-..
T Consensus 324 SGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~ 403 (448)
T PF09818_consen 324 SGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFD 403 (448)
T ss_pred CchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHh
Confidence 445778888888887 9999999876521 11000 00003345666777777789999999988877666
Q ss_pred ccccccceec
Q 005138 179 ENLEPVLRED 188 (712)
Q Consensus 179 ~~~~~~ll~~ 188 (712)
.+|++++|++
T Consensus 404 vAD~Vi~Md~ 413 (448)
T PF09818_consen 404 VADRVIMMDE 413 (448)
T ss_pred hCCEEEEecC
Confidence 7888887766
No 492
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=96.97 E-value=0.0016 Score=79.25 Aligned_cols=46 Identities=9% Similarity=0.041 Sum_probs=36.8
Q ss_pred HHhhhccccCCCc-hhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccc
Q 005138 126 DIVLINMWCHDIG-REQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPL 178 (712)
Q Consensus 126 ~iLlLDEP~~~LD-~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~ 178 (712)
.++++|||...|| +.. .+.+.+.++.+.+ .|..++++||+++.+..
T Consensus 644 ~il~iDE~w~~L~~~~~------~~~i~~~lk~~RK-~~~~~i~~TQ~~~d~~~ 690 (800)
T PRK13898 644 SMIVLDEAWALIDNPVF------APKIKDWLKVLRK-LNTFVIFATQSVEDASK 690 (800)
T ss_pred cEEEEeCChhhCCCHHH------HHHHHHHHHHHHH-cCCEEEEEeCCHHHHHh
Confidence 6788999999998 555 6778888888765 48899999999976543
No 493
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.96 E-value=0.0016 Score=66.90 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=20.7
Q ss_pred ccccEEEEEcCCCCChhHHHHHHh
Q 005138 38 LSYAVVSIMGPQSSGKSTLLNHLF 61 (712)
Q Consensus 38 ~~g~ivaIiGpNGSGKSTLLn~L~ 61 (712)
.+|+++.|.|++|+|||||...++
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHH
Confidence 456699999999999999988655
No 494
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=96.95 E-value=0.00056 Score=74.30 Aligned_cols=41 Identities=24% Similarity=0.232 Sum_probs=35.3
Q ss_pred ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCC
Q 005138 22 SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKG 73 (712)
Q Consensus 22 ~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG 73 (712)
.+++.+ +.+..|+ +++|+|+||+|||||+++|+|.. .|+.|
T Consensus 58 ~aiD~l-~~i~~Gq------ri~I~G~sG~GKTtLl~~Ia~~~----~~~~~ 98 (326)
T cd01136 58 RAIDGL-LTVGKGQ------RLGIFAGSGVGKSTLLGMIARGT----TADVN 98 (326)
T ss_pred EEEeee-eEEcCCc------EEEEECCCCCChHHHHHHHhCCC----CCCEE
Confidence 357777 8899998 99999999999999999999988 55543
No 495
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.95 E-value=0.00057 Score=72.64 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
++||.|+||||||||+++|.|+.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll 23 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLF 23 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhh
Confidence 58999999999999999999998
No 496
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=96.90 E-value=0.00075 Score=67.95 Aligned_cols=29 Identities=28% Similarity=0.519 Sum_probs=24.3
Q ss_pred EEEEEcCCCCChhHHHHHHhccccCccCCCCCe
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGR 74 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~ 74 (712)
-++|+|++|+|||||+|+|+|.. .+..|.
T Consensus 3 kI~i~G~~g~GKSSLin~L~g~~----~~~~~~ 31 (197)
T cd04104 3 NIAVTGESGAGKSSFINALRGVG----HEEEGA 31 (197)
T ss_pred EEEEECCCCCCHHHHHHHHhccC----CCCCCc
Confidence 37999999999999999999987 455454
No 497
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=96.90 E-value=0.00061 Score=67.41 Aligned_cols=34 Identities=26% Similarity=0.287 Sum_probs=26.0
Q ss_pred cccccccccccccccccEEEEEcCCCCChhHHHHHHhcccc
Q 005138 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 25 ~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
+++.+++++| +++|.||||+||||+|.+|.-..+
T Consensus 11 ~~~~i~f~~g-------~~vi~G~Ng~GKStil~ai~~~L~ 44 (202)
T PF13476_consen 11 KDLEIDFSPG-------LNVIYGPNGSGKSTILEAIRYALG 44 (202)
T ss_dssp EEEEEE--SE-------EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cceEEEcCCC-------cEEEECCCCCCHHHHHHHHHHHHc
Confidence 4444555444 799999999999999999988773
No 498
>PRK13764 ATPase; Provisional
Probab=96.89 E-value=0.0013 Score=76.78 Aligned_cols=122 Identities=18% Similarity=0.143 Sum_probs=68.4
Q ss_pred EEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccccCCCccchhccccCCCcc-cccchhhHHHHHHHHH
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGR-ERGEDDTAFEKQSALF 120 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~~~~~~~~~v~d~~g~~~~-~r~~~~~~ferQrv~~ 120 (712)
-+.|.||.||||||++++|.... +..|+...| +... .-+.... ..... ..... + ......
T Consensus 259 ~ILIsG~TGSGKTTll~AL~~~i-----~~~~riV~T----iEDp-----~El~~~~-~i~q~~~~~~~---~-~~~~~~ 319 (602)
T PRK13764 259 GILIAGAPGAGKSTFAQALAEFY-----ADMGKIVKT----MESP-----RDLQVPP-EITQYSKLEGS---M-EETADI 319 (602)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----hhCCCEEEE----ECCC-----ccccCCC-cceEEeecccc---H-HHHHHH
Confidence 58999999999999999999887 344543211 1100 0000000 00000 00011 1 111111
Q ss_pred HHHHH-HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEec---------------CCCCccccccccc
Q 005138 121 ALAVS-DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIR---------------DKTRTPLENLEPV 184 (712)
Q Consensus 121 A~Ala-~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtH---------------Dl~~~~~~~~~~~ 184 (712)
++-.- |++++||.-. .+ -++++..+... |..++-+.| ++..++..+|.++
T Consensus 320 lLR~rPD~IivGEiRd---~E----------t~~~~~~l~~a-g~GvigTlHA~sa~~Ai~Rl~~~v~lg~i~~iID~IV 385 (602)
T PRK13764 320 LLLVRPDYTIYDEMRK---TE----------DFKIFADMRLA-GVGMVGVVHATRPIDAIQRFIGRVELGMIPQIVDTVI 385 (602)
T ss_pred HHhhCCCEEEECCCCC---HH----------HHHHHHHHHHc-CCeEEEEECCCCHHHHHHHHHhhhhhchHHHhhcEEE
Confidence 11111 9999999643 11 24444444333 778888999 8888888889999
Q ss_pred ceecCCeE--EEecC
Q 005138 185 LREDIQKI--WDSVP 197 (712)
Q Consensus 185 ll~~~G~I--~~~g~ 197 (712)
++.+ |+| +.+++
T Consensus 386 ~I~~-G~I~~v~~~~ 399 (602)
T PRK13764 386 FIED-GEVSKVYDLE 399 (602)
T ss_pred EEeC-CEEEEEEeee
Confidence 8888 998 44443
No 499
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=96.88 E-value=0.001 Score=70.32 Aligned_cols=56 Identities=32% Similarity=0.478 Sum_probs=35.6
Q ss_pred EEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC----eeeccccCCCccchhccccCCCcc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG----IWMARCAGIEPCTLIMDLEGTDGR 104 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g----i~~~~~~~~~~~~~v~d~~g~~~~ 104 (712)
.|+|+|+.|+|||||+|.|.|-.+.. .+...++|.. +.... .....+.|..|....
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~---vs~~~~TTr~~i~~i~~~~----~~qii~vDTPG~~~~ 61 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISI---TSPKAQTTRNRISGIHTTG----ASQIIFIDTPGFHEK 61 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEee---cCCCCCcccCcEEEEEEcC----CcEEEEEECcCCCCC
Confidence 68999999999999999999976421 2222233432 22211 123556798887543
No 500
>COG4637 Predicted ATPase [General function prediction only]
Probab=96.88 E-value=0.0013 Score=69.94 Aligned_cols=57 Identities=7% Similarity=0.018 Sum_probs=41.8
Q ss_pred HHHHHHHHHHH-----HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccc
Q 005138 115 KQSALFALAVS-----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE 179 (712)
Q Consensus 115 rQrv~~A~Ala-----~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~ 179 (712)
-+-+++|.++. .++++|||..+|=|.- +..+...+.+..+. .-|++|||....+..+
T Consensus 276 lRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~l------L~~La~~~~sAak~--sQv~VsTHS~rLl~~~ 337 (373)
T COG4637 276 LRFLALATLLLSPRPPPLLLLDEPETSLHPDL------LPALAELMRSAAKR--SQVIVSTHSPRLLNAV 337 (373)
T ss_pred HHHHHHHHHHcCCCCCceeEecCcccccCHhH------HHHHHHHHHHhhcc--ceEEEEeCCHHHHhhc
Confidence 33444444444 8999999999998876 77788888876543 4899999988765443
Done!