Query 005138
Match_columns 712
No_of_seqs 545 out of 1828
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 16:32:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005138.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005138hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fvq_A Fe(3+) IONS import ATP- 100.0 1.2E-29 4.1E-34 275.0 8.8 180 8-204 3-229 (359)
2 3gfo_A Cobalt import ATP-bindi 100.0 8.1E-30 2.8E-34 267.7 7.1 182 8-206 6-236 (275)
3 3rlf_A Maltose/maltodextrin im 100.0 1.2E-29 4.2E-34 276.8 8.2 180 8-204 2-224 (381)
4 4g1u_C Hemin import ATP-bindin 100.0 3.2E-29 1.1E-33 262.0 10.5 193 7-216 9-250 (266)
5 3tui_C Methionine import ATP-b 100.0 1.8E-29 6E-34 274.0 8.1 182 6-204 21-254 (366)
6 1g6h_A High-affinity branched- 100.0 1.5E-28 5E-33 255.7 11.1 176 7-200 5-239 (257)
7 1g29_1 MALK, maltose transport 99.9 1.6E-28 5.4E-33 268.1 9.2 179 9-204 3-230 (372)
8 2yyz_A Sugar ABC transporter, 99.9 1.2E-28 4.1E-33 267.7 7.8 179 9-204 3-224 (359)
9 1vpl_A ABC transporter, ATP-bi 99.9 1.3E-28 4.6E-33 255.9 7.8 179 6-202 12-234 (256)
10 2it1_A 362AA long hypothetical 99.9 1.4E-28 4.7E-33 267.5 8.0 179 9-204 3-224 (362)
11 2nq2_C Hypothetical ABC transp 99.9 2.4E-28 8.2E-33 253.6 8.8 188 9-214 4-228 (253)
12 1oxx_K GLCV, glucose, ABC tran 99.9 1.3E-28 4.5E-33 267.1 7.0 179 9-204 3-231 (353)
13 3tif_A Uncharacterized ABC tra 99.9 2.9E-28 1E-32 250.3 9.0 174 9-200 1-231 (235)
14 2olj_A Amino acid ABC transpor 99.9 1.6E-28 5.5E-33 256.3 7.1 177 8-202 23-247 (263)
15 1v43_A Sugar-binding transport 99.9 1.6E-28 5.6E-33 267.8 7.0 181 7-204 9-232 (372)
16 2pcj_A ABC transporter, lipopr 99.9 3E-28 1E-32 248.3 7.8 171 8-197 3-222 (224)
17 1z47_A CYSA, putative ABC-tran 99.9 2.8E-28 9.4E-33 264.3 7.7 180 8-204 13-236 (355)
18 1ji0_A ABC transporter; ATP bi 99.9 3.3E-28 1.1E-32 250.6 7.6 178 8-203 5-228 (240)
19 2onk_A Molybdate/tungstate ABC 99.9 4E-28 1.4E-32 250.1 8.1 176 9-203 1-216 (240)
20 3d31_A Sulfate/molybdate ABC t 99.9 3.2E-28 1.1E-32 263.4 5.9 179 9-204 1-218 (348)
21 1b0u_A Histidine permease; ABC 99.9 4.7E-28 1.6E-32 252.7 6.6 177 9-203 6-242 (262)
22 2ihy_A ABC transporter, ATP-bi 99.9 1.1E-27 3.7E-32 252.2 7.7 188 8-213 20-262 (279)
23 2yz2_A Putative ABC transporte 99.9 5.2E-27 1.8E-31 245.3 11.3 177 9-203 2-227 (266)
24 2cbz_A Multidrug resistance-as 99.9 6.4E-27 2.2E-31 240.6 9.9 173 9-202 3-216 (237)
25 2d2e_A SUFC protein; ABC-ATPas 99.9 1.4E-26 4.8E-31 239.9 11.8 173 9-199 3-229 (250)
26 2qi9_C Vitamin B12 import ATP- 99.9 9.2E-27 3.1E-31 241.2 9.1 173 9-203 4-222 (249)
27 2ixe_A Antigen peptide transpo 99.9 2.2E-26 7.5E-31 241.2 10.7 176 8-202 15-244 (271)
28 2pze_A Cystic fibrosis transme 99.9 1.3E-26 4.6E-31 237.0 8.2 175 8-203 5-218 (229)
29 2ff7_A Alpha-hemolysin translo 99.9 3.5E-26 1.2E-30 236.5 11.4 174 9-203 7-232 (247)
30 2zu0_C Probable ATP-dependent 99.9 5.6E-26 1.9E-30 237.6 11.9 178 8-201 19-252 (267)
31 1mv5_A LMRA, multidrug resista 99.9 5.1E-26 1.8E-30 234.6 8.3 173 9-202 1-225 (243)
32 3nh6_A ATP-binding cassette SU 99.9 1.4E-25 4.9E-30 238.7 9.2 175 9-203 53-277 (306)
33 2pjz_A Hypothetical protein ST 99.9 3.8E-25 1.3E-29 230.8 11.9 172 9-203 1-215 (263)
34 2ghi_A Transport protein; mult 99.9 2.8E-25 9.6E-30 231.4 9.6 173 8-202 16-241 (260)
35 1sgw_A Putative ABC transporte 99.9 3.1E-25 1.1E-29 224.7 9.3 166 8-192 9-210 (214)
36 3gd7_A Fusion complex of cysti 99.9 2.2E-24 7.4E-29 236.7 9.6 175 8-204 18-243 (390)
37 2bbs_A Cystic fibrosis transme 99.9 1.1E-24 3.7E-29 230.4 5.0 173 8-202 39-246 (290)
38 4a82_A Cystic fibrosis transme 99.9 4E-23 1.4E-27 238.1 11.2 175 9-204 339-565 (578)
39 3b5x_A Lipid A export ATP-bind 99.9 7E-23 2.4E-27 236.2 12.8 175 9-203 341-567 (582)
40 3qf4_B Uncharacterized ABC tra 99.9 4.8E-23 1.6E-27 238.3 10.7 173 9-203 354-578 (598)
41 3b60_A Lipid A export ATP-bind 99.9 7.1E-23 2.4E-27 236.2 12.0 173 9-203 341-567 (582)
42 2yl4_A ATP-binding cassette SU 99.9 1.1E-22 3.8E-27 235.2 11.7 172 10-203 342-570 (595)
43 3qf4_A ABC transporter, ATP-bi 99.9 1E-22 3.6E-27 235.0 10.5 174 9-203 341-566 (587)
44 3bk7_A ABC transporter ATP-bin 99.9 9.2E-23 3.1E-27 235.7 9.7 180 8-203 356-563 (607)
45 1yqt_A RNAse L inhibitor; ATP- 99.9 7.2E-23 2.5E-27 233.9 8.0 180 8-203 286-493 (538)
46 3ozx_A RNAse L inhibitor; ATP 99.9 1.5E-22 5.2E-27 230.9 8.3 177 8-200 268-474 (538)
47 3j16_B RLI1P; ribosome recycli 99.9 3.2E-22 1.1E-26 231.0 7.2 181 13-204 350-560 (608)
48 3ux8_A Excinuclease ABC, A sub 99.8 3.3E-21 1.1E-25 225.8 10.0 88 108-204 201-299 (670)
49 3q5d_A Atlastin-1; G protein, 99.8 5E-20 1.7E-24 204.9 18.7 335 9-369 34-432 (447)
50 3bk7_A ABC transporter ATP-bin 99.8 3.2E-21 1.1E-25 222.8 9.3 162 9-188 83-303 (607)
51 4f4c_A Multidrug resistance pr 99.8 3.3E-21 1.1E-25 240.6 8.7 176 9-204 1076-1305(1321)
52 3g5u_A MCG1178, multidrug resi 99.8 1.2E-20 4.2E-25 234.9 13.4 176 9-204 1030-1259(1284)
53 1yqt_A RNAse L inhibitor; ATP- 99.8 5.7E-21 1.9E-25 218.2 9.1 161 10-188 21-233 (538)
54 2iw3_A Elongation factor 3A; a 99.8 4.3E-21 1.5E-25 229.9 6.0 78 109-197 901-981 (986)
55 3g5u_A MCG1178, multidrug resi 99.8 1.2E-20 4.2E-25 234.9 9.3 176 9-204 387-614 (1284)
56 4f4c_A Multidrug resistance pr 99.8 5.2E-20 1.8E-24 229.8 11.7 176 9-204 415-642 (1321)
57 3j16_B RLI1P; ribosome recycli 99.8 2.2E-20 7.6E-25 215.6 4.6 164 9-191 69-298 (608)
58 3ozx_A RNAse L inhibitor; ATP 99.8 1.1E-19 3.7E-24 207.4 8.8 157 14-188 4-212 (538)
59 3ux8_A Excinuclease ABC, A sub 99.8 9.9E-20 3.4E-24 213.3 7.3 87 108-203 542-640 (670)
60 2iw3_A Elongation factor 3A; a 99.8 3.8E-19 1.3E-23 213.1 11.5 172 9-202 435-634 (986)
61 2npi_A Protein CLP1; CLP1-PCF1 99.7 4.8E-19 1.7E-23 198.4 -1.1 165 8-201 117-336 (460)
62 4gp7_A Metallophosphoesterase; 99.7 2.5E-19 8.7E-24 174.3 -3.2 134 26-178 1-164 (171)
63 3pih_A Uvrabc system protein A 99.7 6.8E-18 2.3E-22 202.0 7.0 87 109-204 805-903 (916)
64 2vf7_A UVRA2, excinuclease ABC 99.7 5.8E-18 2E-22 201.0 4.9 88 109-204 730-828 (842)
65 2ygr_A Uvrabc system protein A 99.7 3.7E-17 1.3E-21 195.4 8.1 87 109-203 863-960 (993)
66 2r6f_A Excinuclease ABC subuni 99.7 4E-17 1.4E-21 194.5 8.3 87 109-203 845-942 (972)
67 4aby_A DNA repair protein RECN 99.6 6.7E-16 2.3E-20 169.9 6.7 78 110-197 296-382 (415)
68 3qf7_A RAD50; ABC-ATPase, ATPa 99.6 1.4E-15 4.6E-20 165.8 7.8 77 109-194 279-364 (365)
69 3b85_A Phosphate starvation-in 99.6 7.4E-17 2.5E-21 162.5 -2.6 122 31-177 19-162 (208)
70 1tq4_A IIGP1, interferon-induc 99.6 1.2E-15 4.2E-20 168.3 6.8 156 16-183 31-247 (413)
71 1f5n_A Interferon-induced guan 99.6 2.9E-12 1E-16 147.0 33.5 333 39-394 37-423 (592)
72 1ye8_A Protein THEP1, hypothet 99.5 1.3E-14 4.6E-19 142.3 6.0 134 42-194 2-159 (178)
73 3thx_A DNA mismatch repair pro 99.5 4.1E-14 1.4E-18 170.0 10.4 169 9-201 631-811 (934)
74 2o8b_B DNA mismatch repair pro 99.5 2.5E-14 8.5E-19 173.8 6.5 170 8-193 749-930 (1022)
75 1znw_A Guanylate kinase, GMP k 99.4 3.6E-15 1.2E-19 149.0 -2.1 57 126-188 143-203 (207)
76 2ehv_A Hypothetical protein PH 99.4 2.5E-14 8.5E-19 145.3 3.4 60 126-188 137-207 (251)
77 2pt7_A CAG-ALFA; ATPase, prote 99.4 1.5E-14 5.2E-19 155.5 1.7 128 23-191 160-291 (330)
78 2obl_A ESCN; ATPase, hydrolase 99.4 2.7E-14 9.3E-19 154.5 1.4 166 8-201 44-253 (347)
79 1e69_A Chromosome segregation 99.4 1.1E-12 3.9E-17 140.0 13.7 82 109-199 219-309 (322)
80 3szr_A Interferon-induced GTP- 99.4 5E-12 1.7E-16 146.4 19.5 184 8-203 9-228 (608)
81 4a74_A DNA repair and recombin 99.4 1.1E-13 3.8E-18 138.7 4.3 146 39-188 24-199 (231)
82 1tf7_A KAIC; homohexamer, hexa 99.4 1.4E-13 4.9E-18 156.6 5.2 163 9-188 12-209 (525)
83 2dpy_A FLII, flagellum-specifi 99.4 4.2E-14 1.4E-18 157.5 -0.8 166 8-202 130-343 (438)
84 3thx_B DNA mismatch repair pro 99.3 1.9E-13 6.6E-18 163.8 3.3 139 23-183 662-805 (918)
85 2eyu_A Twitching motility prot 99.3 5.4E-13 1.9E-17 138.7 3.9 126 23-188 16-147 (261)
86 1wb9_A DNA mismatch repair pro 99.3 1.2E-12 4E-17 155.5 6.3 150 23-196 597-751 (800)
87 3b9q_A Chloroplast SRP recepto 99.3 6.1E-13 2.1E-17 141.3 3.2 129 25-178 91-261 (302)
88 1cr0_A DNA primase/helicase; R 99.3 4.5E-13 1.5E-17 140.8 1.6 159 22-192 23-237 (296)
89 2o5v_A DNA replication and rep 99.3 1.6E-11 5.3E-16 133.4 13.5 73 114-201 270-354 (359)
90 2w0m_A SSO2452; RECA, SSPF, un 99.3 2.5E-12 8.4E-17 128.6 6.1 150 23-188 11-191 (235)
91 3sop_A Neuronal-specific septi 99.3 3.1E-13 1.1E-17 141.2 -1.4 119 42-176 4-153 (270)
92 2v9p_A Replication protein E1; 99.3 1E-14 3.5E-19 154.9 -12.9 149 9-201 101-264 (305)
93 1ewq_A DNA mismatch repair pro 99.3 2E-12 6.9E-17 152.8 4.7 139 10-177 551-702 (765)
94 3qkt_A DNA double-strand break 99.2 5.3E-12 1.8E-16 135.9 6.5 70 110-187 249-327 (339)
95 1tf7_A KAIC; homohexamer, hexa 99.2 4.2E-12 1.4E-16 144.6 5.5 139 38-191 279-444 (525)
96 1z6g_A Guanylate kinase; struc 99.2 1.7E-13 5.8E-18 138.4 -5.9 143 23-184 12-205 (218)
97 2og2_A Putative signal recogni 99.2 4.1E-12 1.4E-16 137.8 2.8 137 25-186 148-326 (359)
98 2qnr_A Septin-2, protein NEDD5 99.1 4.1E-12 1.4E-16 134.7 -2.4 133 13-174 2-168 (301)
99 4ido_A Atlastin-1; GTPase, GTP 99.1 1.5E-09 5E-14 120.4 16.9 335 9-366 34-429 (457)
100 2i3b_A HCR-ntpase, human cance 99.1 1.1E-11 3.6E-16 122.9 -0.7 136 40-195 1-168 (189)
101 1pui_A ENGB, probable GTP-bind 99.1 1.1E-10 3.6E-15 115.3 6.1 139 9-161 3-199 (210)
102 3jvv_A Twitching mobility prot 99.0 4.3E-11 1.5E-15 129.8 2.5 119 39-188 122-245 (356)
103 2qag_C Septin-7; cell cycle, c 99.0 8.6E-11 3E-15 130.0 2.3 141 8-176 10-180 (418)
104 1rj9_A FTSY, signal recognitio 98.9 1.3E-10 4.4E-15 123.5 1.4 121 39-175 101-260 (304)
105 3aez_A Pantothenate kinase; tr 98.9 9.5E-12 3.2E-16 132.7 -7.4 121 9-139 43-209 (312)
106 2cvh_A DNA repair and recombin 98.9 4.4E-10 1.5E-14 111.6 3.2 147 24-188 9-184 (220)
107 1pzn_A RAD51, DNA repair and r 98.9 1.1E-09 3.8E-14 118.4 6.5 154 39-197 130-309 (349)
108 3pih_A Uvrabc system protein A 98.9 8.6E-10 2.9E-14 132.3 4.7 87 108-203 463-560 (916)
109 3ec2_A DNA replication protein 98.9 5E-10 1.7E-14 108.6 1.8 104 40-175 38-145 (180)
110 2qag_B Septin-6, protein NEDD5 98.8 5.7E-10 2E-14 123.3 1.5 50 9-65 16-67 (427)
111 1f2t_B RAD50 ABC-ATPase; DNA d 98.8 3E-09 1E-13 101.2 6.1 73 107-187 55-136 (148)
112 1nlf_A Regulatory protein REPA 98.8 2E-09 7E-14 112.1 4.5 52 122-176 128-184 (279)
113 1lw7_A Transcriptional regulat 98.8 3.7E-10 1.3E-14 122.5 -2.0 156 25-200 159-352 (365)
114 2ewv_A Twitching motility prot 98.8 1.7E-09 5.9E-14 117.9 3.1 116 39-186 135-256 (372)
115 3asz_A Uridine kinase; cytidin 98.8 2.7E-11 9.3E-16 120.4 -10.3 54 114-173 98-161 (211)
116 2r6f_A Excinuclease ABC subuni 98.8 3.6E-09 1.2E-13 126.5 5.5 88 108-203 503-600 (972)
117 1s96_A Guanylate kinase, GMP k 98.7 1E-09 3.4E-14 111.1 -0.1 111 40-177 16-144 (219)
118 1htw_A HI0065; nucleotide-bind 98.7 6.8E-10 2.3E-14 106.8 -1.4 54 12-76 10-64 (158)
119 1n0w_A DNA repair protein RAD5 98.7 7.3E-09 2.5E-13 104.3 5.7 50 126-175 121-176 (243)
120 2kjq_A DNAA-related protein; s 98.7 7E-09 2.4E-13 98.5 3.3 90 39-173 35-125 (149)
121 2vf7_A UVRA2, excinuclease ABC 98.7 9.6E-09 3.3E-13 122.3 5.1 88 108-203 378-475 (842)
122 2ygr_A Uvrabc system protein A 98.7 5.3E-09 1.8E-13 125.5 2.3 87 109-203 521-617 (993)
123 3e70_C DPA, signal recognition 98.6 6.2E-09 2.1E-13 111.6 2.3 117 38-173 127-279 (328)
124 2bdt_A BH3686; alpha-beta prot 98.5 1.5E-09 5.1E-14 106.0 -5.4 54 136-200 127-181 (189)
125 2gza_A Type IV secretion syste 98.5 1.9E-08 6.5E-13 109.1 2.2 132 25-188 166-301 (361)
126 1ni3_A YCHF GTPase, YCHF GTP-b 98.5 1E-08 3.5E-13 112.4 -0.9 64 124-197 141-207 (392)
127 1udx_A The GTP-binding protein 98.5 6.1E-08 2.1E-12 107.1 4.9 127 25-172 148-307 (416)
128 2yhs_A FTSY, cell division pro 98.4 2.5E-08 8.7E-13 111.8 0.2 42 25-76 284-325 (503)
129 3euj_A Chromosome partition pr 98.4 1.2E-07 4.3E-12 106.3 5.3 43 22-75 18-60 (483)
130 3lda_A DNA repair protein RAD5 98.4 2E-07 6.9E-12 102.4 5.9 130 38-173 176-328 (400)
131 1sq5_A Pantothenate kinase; P- 98.4 3.3E-08 1.1E-12 104.8 -1.5 55 9-74 37-112 (308)
132 2qm8_A GTPase/ATPase; G protei 98.3 2.9E-08 9.9E-13 106.8 -2.8 57 9-75 29-86 (337)
133 1sxj_E Activator 1 40 kDa subu 98.3 7E-07 2.4E-11 95.2 6.7 42 126-176 136-177 (354)
134 2jeo_A Uridine-cytidine kinase 98.3 2.8E-07 9.7E-12 94.0 2.8 37 22-64 13-49 (245)
135 3kta_B Chromosome segregation 98.2 7.8E-07 2.7E-11 86.7 4.4 70 108-186 63-139 (173)
136 2dr3_A UPF0273 protein PH0284; 98.2 1.5E-06 5.1E-11 87.4 6.2 46 126-175 130-175 (247)
137 4ad8_A DNA repair protein RECN 98.2 5.1E-07 1.8E-11 102.4 2.4 66 114-188 402-472 (517)
138 2px0_A Flagellar biosynthesis 98.1 4.9E-07 1.7E-11 95.5 1.9 32 39-74 104-135 (296)
139 1ls1_A Signal recognition part 98.1 8.5E-07 2.9E-11 93.5 2.9 108 40-158 98-209 (295)
140 2e87_A Hypothetical protein PH 98.1 2.4E-06 8.3E-11 92.2 6.5 122 40-175 167-294 (357)
141 3lnc_A Guanylate kinase, GMP k 98.1 9E-07 3.1E-11 89.2 2.6 36 23-64 16-52 (231)
142 3tr0_A Guanylate kinase, GMP k 98.1 1.3E-06 4.5E-11 85.6 3.3 24 41-64 8-31 (205)
143 1qhl_A Protein (cell division 98.1 2.6E-07 8.8E-12 94.0 -2.3 50 8-74 8-57 (227)
144 1oix_A RAS-related protein RAB 98.0 4.2E-06 1.4E-10 81.6 5.7 24 42-65 31-54 (191)
145 3nwj_A ATSK2; P loop, shikimat 98.0 1.2E-06 4E-11 90.4 1.5 51 8-64 16-72 (250)
146 3a00_A Guanylate kinase, GMP k 98.0 2E-06 6.8E-11 83.9 3.0 24 41-64 2-25 (186)
147 1lvg_A Guanylate kinase, GMP k 98.0 2.3E-06 7.8E-11 84.6 3.0 25 40-64 4-28 (198)
148 3c8u_A Fructokinase; YP_612366 98.0 2E-06 6.8E-11 85.4 2.4 26 39-64 21-46 (208)
149 3kta_A Chromosome segregation 98.0 5.9E-06 2E-10 79.6 5.5 33 25-64 18-50 (182)
150 1p9r_A General secretion pathw 97.9 1.8E-06 6E-11 95.5 -0.1 34 39-76 166-199 (418)
151 1u0l_A Probable GTPase ENGC; p 97.9 4.9E-06 1.7E-10 87.8 3.3 33 40-76 169-201 (301)
152 3t34_A Dynamin-related protein 97.9 2.2E-05 7.4E-10 84.7 8.4 34 23-65 26-59 (360)
153 2oap_1 GSPE-2, type II secreti 97.8 3.4E-06 1.2E-10 95.5 1.6 43 23-75 249-291 (511)
154 2f9l_A RAB11B, member RAS onco 97.8 1.1E-05 3.8E-10 78.8 4.8 24 42-65 7-30 (199)
155 2rcn_A Probable GTPase ENGC; Y 97.8 1E-05 3.6E-10 87.5 4.1 33 40-76 215-248 (358)
156 1zp6_A Hypothetical protein AT 97.8 9.2E-06 3.1E-10 78.7 3.3 25 40-64 9-33 (191)
157 2zr9_A Protein RECA, recombina 97.8 1.6E-05 5.5E-10 85.7 5.3 27 38-64 59-85 (349)
158 1kgd_A CASK, peripheral plasma 97.8 1E-05 3.6E-10 78.3 3.3 27 38-64 3-29 (180)
159 2j41_A Guanylate kinase; GMP, 97.8 1.1E-05 3.7E-10 79.0 3.4 24 41-64 7-30 (207)
160 1w1w_A Structural maintenance 97.7 1.3E-05 4.5E-10 88.5 4.3 71 110-188 334-411 (430)
161 3auy_A DNA double-strand break 97.7 2E-05 6.8E-10 85.5 5.1 73 110-191 281-363 (371)
162 1t9h_A YLOQ, probable GTPase E 97.7 5.8E-06 2E-10 87.7 0.7 33 40-76 173-205 (307)
163 2bbw_A Adenylate kinase 4, AK4 97.7 9.6E-06 3.3E-10 82.5 2.1 31 40-74 27-60 (246)
164 3lxx_A GTPase IMAP family memb 97.7 3.2E-05 1.1E-09 78.0 5.4 114 42-171 31-154 (239)
165 2yv5_A YJEQ protein; hydrolase 97.7 2E-05 7E-10 83.1 3.9 32 40-76 165-196 (302)
166 1vma_A Cell division protein F 97.6 2.4E-05 8.2E-10 82.9 3.8 32 39-74 103-134 (306)
167 4eun_A Thermoresistant glucoki 97.6 2.6E-05 8.7E-10 76.7 3.0 26 39-64 28-53 (200)
168 3uie_A Adenylyl-sulfate kinase 97.6 2.1E-05 7.3E-10 77.3 2.0 35 24-64 15-49 (200)
169 4e22_A Cytidylate kinase; P-lo 97.5 2.3E-05 7.7E-10 80.4 1.9 32 40-75 27-61 (252)
170 3tau_A Guanylate kinase, GMP k 97.5 5.1E-05 1.7E-09 75.3 3.8 26 39-64 7-32 (208)
171 2vp4_A Deoxynucleoside kinase; 97.5 4.2E-05 1.4E-09 77.1 3.1 25 39-63 19-43 (230)
172 3vaa_A Shikimate kinase, SK; s 97.5 4.9E-05 1.7E-09 74.6 3.4 36 23-64 14-49 (199)
173 1w1w_A Structural maintenance 97.4 7.6E-05 2.6E-09 82.4 4.2 45 9-64 6-50 (430)
174 3ney_A 55 kDa erythrocyte memb 97.4 8.8E-05 3E-09 73.6 4.0 27 38-64 17-43 (197)
175 1rz3_A Hypothetical protein rb 97.4 5.9E-05 2E-09 74.3 2.5 26 39-64 21-46 (201)
176 3tqc_A Pantothenate kinase; bi 97.4 6.7E-05 2.3E-09 80.0 2.9 42 23-64 75-116 (321)
177 3hr8_A Protein RECA; alpha and 97.3 0.00016 5.6E-09 78.1 5.8 27 38-64 59-85 (356)
178 1kag_A SKI, shikimate kinase I 97.3 7.3E-05 2.5E-09 71.0 2.7 24 41-64 5-28 (173)
179 1knq_A Gluconate kinase; ALFA/ 97.3 9.3E-05 3.2E-09 70.6 3.4 26 39-64 7-32 (175)
180 3lxw_A GTPase IMAP family memb 97.3 0.00016 5.4E-09 73.8 5.2 121 42-175 23-151 (247)
181 1in4_A RUVB, holliday junction 97.3 1.6E-05 5.4E-10 84.9 -2.6 56 9-64 18-75 (334)
182 2f1r_A Molybdopterin-guanine d 97.3 3.4E-05 1.2E-09 74.8 -0.1 27 41-71 3-29 (171)
183 1svm_A Large T antigen; AAA+ f 97.3 7.7E-05 2.6E-09 81.3 2.4 36 23-64 158-193 (377)
184 2ce7_A Cell division protein F 97.3 0.00026 8.9E-09 79.4 6.7 106 43-176 52-167 (476)
185 1ega_A Protein (GTP-binding pr 97.2 0.00014 4.8E-09 76.6 3.9 27 39-65 7-33 (301)
186 1nij_A Hypothetical protein YJ 97.2 0.0001 3.6E-09 78.2 2.8 35 41-75 5-43 (318)
187 2r6a_A DNAB helicase, replicat 97.2 0.00015 5.2E-09 80.7 3.5 46 126-171 315-362 (454)
188 2dy1_A Elongation factor G; tr 97.1 0.00035 1.2E-08 81.6 5.7 24 41-64 10-33 (665)
189 2p67_A LAO/AO transport system 97.1 4.1E-05 1.4E-09 82.1 -2.2 49 10-64 31-80 (341)
190 1fnn_A CDC6P, cell division co 97.1 0.00026 8.7E-09 75.8 3.9 23 42-64 46-68 (389)
191 2gj8_A MNME, tRNA modification 97.0 0.00037 1.3E-08 66.4 4.3 28 38-65 2-29 (172)
192 2ius_A DNA translocase FTSK; n 97.0 0.00014 4.7E-09 82.2 1.3 31 26-62 159-189 (512)
193 2qby_A CDC6 homolog 1, cell di 97.0 0.00016 5.6E-09 76.9 1.4 27 38-64 43-69 (386)
194 2x8a_A Nuclear valosin-contain 97.0 0.00022 7.4E-09 74.2 2.2 22 43-64 47-68 (274)
195 1zu4_A FTSY; GTPase, signal re 97.0 0.00025 8.7E-09 75.5 2.8 40 25-74 96-135 (320)
196 1f2t_A RAD50 ABC-ATPase; DNA d 97.0 0.00042 1.4E-08 65.3 3.8 23 42-64 25-47 (149)
197 2j69_A Bacterial dynamin-like 97.0 0.086 2.9E-06 61.7 24.2 25 41-65 70-94 (695)
198 2www_A Methylmalonic aciduria 96.9 0.00029 9.9E-09 75.8 2.8 26 39-64 73-98 (349)
199 4dcu_A GTP-binding protein ENG 96.9 0.00085 2.9E-08 74.6 6.5 119 41-175 24-143 (456)
200 3cr8_A Sulfate adenylyltranfer 96.9 0.00021 7.3E-09 81.5 1.7 31 39-73 368-398 (552)
201 2pez_A Bifunctional 3'-phospho 96.9 0.0004 1.4E-08 66.6 3.3 28 37-64 2-29 (179)
202 2xau_A PRE-mRNA-splicing facto 96.9 0.00011 3.9E-09 87.1 -0.7 63 112-181 193-260 (773)
203 1jjv_A Dephospho-COA kinase; P 96.9 0.00039 1.3E-08 68.2 3.2 22 42-63 4-25 (206)
204 2qt1_A Nicotinamide riboside k 96.9 0.00044 1.5E-08 67.9 3.3 32 27-64 14-45 (207)
205 2zej_A Dardarin, leucine-rich 96.9 0.00056 1.9E-08 65.6 3.7 23 42-64 4-26 (184)
206 1cke_A CK, MSSA, protein (cyti 96.9 0.00046 1.6E-08 68.4 3.2 24 41-64 6-29 (227)
207 3iev_A GTP-binding protein ERA 96.8 0.00079 2.7E-08 71.0 5.1 62 41-105 11-73 (308)
208 2z4s_A Chromosomal replication 96.8 0.00049 1.7E-08 76.4 3.3 102 40-173 130-237 (440)
209 2if2_A Dephospho-COA kinase; a 96.8 0.0005 1.7E-08 67.2 2.9 21 42-62 3-23 (204)
210 3kl4_A SRP54, signal recogniti 96.8 0.00044 1.5E-08 76.6 2.5 26 39-64 96-121 (433)
211 1ixz_A ATP-dependent metallopr 96.8 0.00046 1.6E-08 70.1 2.4 22 43-64 52-73 (254)
212 3b9p_A CG5977-PA, isoform A; A 96.7 0.0021 7.2E-08 66.5 7.4 26 39-64 53-78 (297)
213 2cjw_A GTP-binding protein GEM 96.7 0.00098 3.4E-08 64.7 4.1 23 42-64 8-30 (192)
214 2wji_A Ferrous iron transport 96.7 0.0008 2.7E-08 63.3 3.2 24 42-65 5-28 (165)
215 1iy2_A ATP-dependent metallopr 96.7 0.00059 2E-08 70.4 2.4 22 43-64 76-97 (278)
216 1ypw_A Transitional endoplasmi 96.6 0.0027 9.3E-08 75.7 7.9 26 39-64 237-262 (806)
217 2qor_A Guanylate kinase; phosp 96.6 0.00097 3.3E-08 65.5 3.0 26 39-64 11-36 (204)
218 1m2o_B GTP-binding protein SAR 96.6 0.0012 4.2E-08 63.7 3.7 42 23-71 13-54 (190)
219 3qks_A DNA double-strand break 96.5 0.0011 3.9E-08 65.5 3.5 23 42-64 25-47 (203)
220 1odf_A YGR205W, hypothetical 3 96.5 0.001 3.5E-08 69.7 3.2 26 39-64 30-55 (290)
221 1wf3_A GTP-binding protein; GT 96.5 0.0019 6.3E-08 68.1 5.0 59 42-103 9-67 (301)
222 2wjg_A FEOB, ferrous iron tran 96.4 0.0014 4.6E-08 62.5 3.2 24 41-64 8-31 (188)
223 1f6b_A SAR1; gtpases, N-termin 96.4 0.0009 3.1E-08 65.2 1.8 37 23-66 15-51 (198)
224 4eaq_A DTMP kinase, thymidylat 96.4 0.0017 5.8E-08 65.5 3.7 38 24-64 13-50 (229)
225 2nzj_A GTP-binding protein REM 96.3 0.0019 6.5E-08 60.4 3.6 25 42-66 6-30 (175)
226 3t61_A Gluconokinase; PSI-biol 96.3 0.0014 4.7E-08 64.1 2.6 23 42-64 20-42 (202)
227 2qtf_A Protein HFLX, GTP-bindi 96.3 0.0015 5.1E-08 70.8 3.1 25 41-65 180-204 (364)
228 4ad8_A DNA repair protein RECN 96.3 0.00095 3.2E-08 75.5 1.3 35 23-64 50-84 (517)
229 3k53_A Ferrous iron transport 96.3 0.0015 5.1E-08 67.2 2.7 24 42-65 5-28 (271)
230 3auy_A DNA double-strand break 96.2 0.0034 1.2E-07 67.8 5.3 21 42-62 27-47 (371)
231 1np6_A Molybdopterin-guanine d 96.2 0.0022 7.4E-08 62.2 3.2 24 41-64 7-30 (174)
232 2xtp_A GTPase IMAP family memb 96.2 0.0056 1.9E-07 62.2 6.4 23 42-64 24-46 (260)
233 2yvu_A Probable adenylyl-sulfa 96.2 0.0026 8.8E-08 61.3 3.6 26 39-64 12-37 (186)
234 1y63_A LMAJ004144AAA protein; 96.2 0.0026 8.9E-08 61.4 3.5 32 26-63 2-33 (184)
235 1m7g_A Adenylylsulfate kinase; 96.1 0.0014 4.7E-08 64.8 1.4 25 40-64 25-49 (211)
236 4fcw_A Chaperone protein CLPB; 96.1 0.0058 2E-07 63.3 6.0 24 41-64 48-71 (311)
237 3cm0_A Adenylate kinase; ATP-b 96.1 0.0028 9.7E-08 60.6 3.3 24 40-63 4-27 (186)
238 1mky_A Probable GTP-binding pr 96.1 0.0024 8.4E-08 70.6 3.2 25 41-65 181-205 (439)
239 3k1j_A LON protease, ATP-depen 96.0 0.0021 7.1E-08 74.1 2.5 36 23-64 49-84 (604)
240 3kb2_A SPBC2 prophage-derived 96.0 0.003 1E-07 59.3 3.1 23 42-64 3-25 (173)
241 1fzq_A ADP-ribosylation factor 96.0 0.002 6.8E-08 61.6 1.8 32 42-73 18-49 (181)
242 3q72_A GTP-binding protein RAD 96.0 0.0027 9.1E-08 58.9 2.5 24 42-65 4-27 (166)
243 3m6a_A ATP-dependent protease 96.0 0.0022 7.5E-08 73.0 2.3 32 39-74 107-138 (543)
244 2ohf_A Protein OLA1, GTP-bindi 96.0 0.0035 1.2E-07 68.6 3.7 23 42-64 24-46 (396)
245 2oil_A CATX-8, RAS-related pro 96.0 0.0051 1.8E-07 58.9 4.5 24 42-65 27-50 (193)
246 1upt_A ARL1, ADP-ribosylation 95.9 0.0045 1.6E-07 57.5 3.9 25 42-66 9-33 (171)
247 1q3t_A Cytidylate kinase; nucl 95.9 0.0036 1.2E-07 62.9 3.3 25 40-64 16-40 (236)
248 3ice_A Transcription terminati 95.9 0.0022 7.7E-08 69.7 1.6 49 10-64 134-198 (422)
249 1r8s_A ADP-ribosylation factor 95.9 0.0049 1.7E-07 57.0 3.7 25 42-66 2-26 (164)
250 3lw7_A Adenylate kinase relate 95.9 0.004 1.4E-07 58.2 3.1 19 42-60 3-21 (179)
251 3pqc_A Probable GTP-binding pr 95.8 0.0048 1.7E-07 58.6 3.7 25 42-66 25-49 (195)
252 3t5d_A Septin-7; GTP-binding p 95.8 0.0054 1.9E-07 63.2 4.1 23 42-64 10-32 (274)
253 3b1v_A Ferrous iron uptake tra 95.8 0.0089 3.1E-07 61.9 5.6 23 42-64 5-27 (272)
254 1j8m_F SRP54, signal recogniti 95.7 0.0036 1.2E-07 65.8 2.2 25 40-64 98-122 (297)
255 1moz_A ARL1, ADP-ribosylation 95.7 0.0034 1.2E-07 59.3 1.8 24 42-65 20-43 (183)
256 1kht_A Adenylate kinase; phosp 95.7 0.0056 1.9E-07 58.4 3.4 25 40-64 3-27 (192)
257 2ged_A SR-beta, signal recogni 95.6 0.0049 1.7E-07 59.0 2.8 25 41-65 49-73 (193)
258 2ga8_A Hypothetical 39.9 kDa p 95.6 0.0033 1.1E-07 67.7 1.8 38 23-64 11-48 (359)
259 1vht_A Dephospho-COA kinase; s 95.6 0.0056 1.9E-07 60.4 3.3 23 41-63 5-27 (218)
260 1qhx_A CPT, protein (chloramph 95.6 0.0058 2E-07 58.0 3.3 24 41-64 4-27 (178)
261 2qag_A Septin-2, protein NEDD5 95.6 0.0044 1.5E-07 66.9 2.7 22 43-64 40-61 (361)
262 2fg5_A RAB-22B, RAS-related pr 95.6 0.007 2.4E-07 58.1 3.9 24 42-65 25-48 (192)
263 2jaq_A Deoxyguanosine kinase; 95.6 0.0057 1.9E-07 59.1 3.1 23 42-64 2-24 (205)
264 2h57_A ADP-ribosylation factor 95.6 0.0086 2.9E-07 57.2 4.3 23 42-64 23-45 (190)
265 1z2a_A RAS-related protein RAB 95.6 0.0054 1.8E-07 56.7 2.8 24 42-65 7-30 (168)
266 2ze6_A Isopentenyl transferase 95.6 0.0055 1.9E-07 62.6 3.1 23 42-64 3-25 (253)
267 2qu8_A Putative nucleolar GTP- 95.5 0.0053 1.8E-07 60.9 2.8 25 41-65 30-54 (228)
268 2ce2_X GTPase HRAS; signaling 95.5 0.0054 1.8E-07 56.2 2.6 24 42-65 5-28 (166)
269 2erx_A GTP-binding protein DI- 95.5 0.0061 2.1E-07 56.5 3.0 24 42-65 5-28 (172)
270 2ffh_A Protein (FFH); SRP54, s 95.5 0.0059 2E-07 67.4 3.3 25 40-64 98-122 (425)
271 1kao_A RAP2A; GTP-binding prot 95.5 0.0059 2E-07 56.2 2.8 24 42-65 5-28 (167)
272 2hjg_A GTP-binding protein ENG 95.5 0.019 6.7E-07 63.2 7.5 25 42-66 5-29 (436)
273 1ex7_A Guanylate kinase; subst 95.5 0.0059 2E-07 59.8 3.0 23 42-64 3-25 (186)
274 1h65_A Chloroplast outer envel 95.5 0.011 3.8E-07 60.6 5.1 25 41-65 40-64 (270)
275 3iby_A Ferrous iron transport 95.5 0.0054 1.9E-07 62.8 2.7 23 42-64 3-25 (256)
276 3h4m_A Proteasome-activating n 95.5 0.014 4.7E-07 59.8 5.8 24 41-64 52-75 (285)
277 1u8z_A RAS-related protein RAL 95.5 0.006 2.1E-07 56.1 2.8 24 42-65 6-29 (168)
278 2dyk_A GTP-binding protein; GT 95.5 0.0062 2.1E-07 56.0 2.8 24 42-65 3-26 (161)
279 1z0j_A RAB-22, RAS-related pro 95.5 0.0063 2.2E-07 56.4 2.8 24 42-65 8-31 (170)
280 1u94_A RECA protein, recombina 95.5 0.012 4E-07 63.5 5.3 27 38-64 61-87 (356)
281 4dsu_A GTPase KRAS, isoform 2B 95.4 0.01 3.5E-07 56.0 4.3 24 42-65 6-29 (189)
282 2iwr_A Centaurin gamma 1; ANK 95.4 0.0071 2.4E-07 56.9 3.2 30 42-71 9-38 (178)
283 1ek0_A Protein (GTP-binding pr 95.4 0.0065 2.2E-07 56.2 2.8 24 42-65 5-28 (170)
284 1ly1_A Polynucleotide kinase; 95.4 0.0074 2.5E-07 57.0 3.2 21 42-62 4-24 (181)
285 1g16_A RAS-related protein SEC 95.4 0.0063 2.1E-07 56.4 2.6 24 42-65 5-28 (170)
286 3tw8_B RAS-related protein RAB 95.4 0.0065 2.2E-07 56.9 2.7 24 42-65 11-34 (181)
287 3i8s_A Ferrous iron transport 95.4 0.0074 2.5E-07 62.3 3.4 24 42-65 5-28 (274)
288 4dhe_A Probable GTP-binding pr 95.4 0.008 2.7E-07 58.9 3.5 23 42-64 31-53 (223)
289 2p5t_B PEZT; postsegregational 95.4 0.0058 2E-07 62.2 2.5 27 38-64 30-56 (253)
290 3q85_A GTP-binding protein REM 95.4 0.0072 2.5E-07 56.1 3.0 24 42-65 4-27 (169)
291 2x2e_A Dynamin-1; nitration, h 95.4 0.023 8E-07 60.7 7.4 25 41-65 32-56 (353)
292 1via_A Shikimate kinase; struc 95.4 0.0065 2.2E-07 57.8 2.7 23 42-64 6-28 (175)
293 1svi_A GTP-binding protein YSX 95.4 0.0062 2.1E-07 58.2 2.6 23 42-64 25-47 (195)
294 1z08_A RAS-related protein RAB 95.4 0.0072 2.4E-07 56.1 2.9 24 42-65 8-31 (170)
295 1c1y_A RAS-related protein RAP 95.4 0.007 2.4E-07 55.9 2.8 24 42-65 5-28 (167)
296 1xjc_A MOBB protein homolog; s 95.4 0.0075 2.6E-07 58.2 3.1 24 41-64 5-28 (169)
297 2lkc_A Translation initiation 95.4 0.0091 3.1E-07 55.9 3.6 25 41-65 9-33 (178)
298 1ky3_A GTP-binding protein YPT 95.4 0.0071 2.4E-07 56.7 2.8 24 42-65 10-33 (182)
299 1gtv_A TMK, thymidylate kinase 95.3 0.0034 1.2E-07 61.4 0.5 23 42-64 2-24 (214)
300 1wms_A RAB-9, RAB9, RAS-relate 95.3 0.0075 2.6E-07 56.5 2.8 24 42-65 9-32 (177)
301 2rhm_A Putative kinase; P-loop 95.3 0.0082 2.8E-07 57.5 3.2 25 40-64 5-29 (193)
302 4bas_A ADP-ribosylation factor 95.3 0.01 3.4E-07 56.8 3.7 29 39-67 16-44 (199)
303 2fn4_A P23, RAS-related protei 95.3 0.0072 2.5E-07 56.6 2.7 24 42-65 11-34 (181)
304 1jwy_B Dynamin A GTPase domain 95.3 0.0078 2.7E-07 62.8 3.1 26 40-65 24-49 (315)
305 1sxj_C Activator 1 40 kDa subu 95.3 0.0049 1.7E-07 65.4 1.6 38 23-64 33-70 (340)
306 1r2q_A RAS-related protein RAB 95.2 0.008 2.8E-07 55.5 2.8 24 42-65 8-31 (170)
307 1ksh_A ARF-like protein 2; sma 95.2 0.012 4E-07 55.8 4.0 23 42-64 20-42 (186)
308 2v54_A DTMP kinase, thymidylat 95.2 0.0099 3.4E-07 57.6 3.4 25 40-64 4-28 (204)
309 2cxx_A Probable GTP-binding pr 95.2 0.0076 2.6E-07 57.1 2.6 24 42-65 3-26 (190)
310 3clv_A RAB5 protein, putative; 95.2 0.0084 2.9E-07 57.0 2.8 24 42-65 9-32 (208)
311 3iij_A Coilin-interacting nucl 95.2 0.0088 3E-07 57.1 2.9 23 41-63 12-34 (180)
312 3r20_A Cytidylate kinase; stru 95.2 0.0088 3E-07 60.7 3.1 22 42-63 11-32 (233)
313 2h17_A ADP-ribosylation factor 95.2 0.0076 2.6E-07 57.2 2.4 32 42-73 23-54 (181)
314 1uf9_A TT1252 protein; P-loop, 95.2 0.0094 3.2E-07 57.6 3.1 24 40-63 8-31 (203)
315 2plr_A DTMP kinase, probable t 95.1 0.01 3.5E-07 57.6 3.4 25 40-64 4-28 (213)
316 1x3s_A RAS-related protein RAB 95.1 0.013 4.4E-07 55.7 4.0 24 42-65 17-40 (195)
317 3def_A T7I23.11 protein; chlor 95.1 0.017 5.8E-07 59.0 5.1 25 41-65 37-61 (262)
318 2hxs_A RAB-26, RAS-related pro 95.1 0.01 3.4E-07 55.6 3.1 24 42-65 8-31 (178)
319 3bc1_A RAS-related protein RAB 95.1 0.0092 3.1E-07 56.5 2.8 24 42-65 13-36 (195)
320 2y8e_A RAB-protein 6, GH09086P 95.1 0.0088 3E-07 55.8 2.6 24 42-65 16-39 (179)
321 3llu_A RAS-related GTP-binding 95.1 0.019 6.5E-07 55.3 5.0 24 41-64 21-44 (196)
322 1nks_A Adenylate kinase; therm 95.1 0.01 3.5E-07 56.6 3.1 23 42-64 3-25 (194)
323 2c95_A Adenylate kinase 1; tra 95.0 0.011 3.9E-07 56.7 3.2 25 40-64 9-33 (196)
324 4a1f_A DNAB helicase, replicat 95.0 0.011 3.7E-07 63.4 3.3 112 38-171 44-164 (338)
325 1jal_A YCHF protein; nucleotid 95.0 0.015 5.2E-07 62.8 4.5 23 42-64 4-26 (363)
326 1z0f_A RAB14, member RAS oncog 95.0 0.01 3.5E-07 55.4 2.8 24 42-65 17-40 (179)
327 1gvn_B Zeta; postsegregational 95.0 0.012 4.1E-07 61.4 3.6 27 38-64 31-57 (287)
328 1zd9_A ADP-ribosylation factor 95.0 0.015 5E-07 55.7 3.9 24 42-65 24-47 (188)
329 3trf_A Shikimate kinase, SK; a 95.0 0.012 4.1E-07 56.2 3.3 25 40-64 5-29 (185)
330 2g6b_A RAS-related protein RAB 95.0 0.01 3.5E-07 55.7 2.8 24 42-65 12-35 (180)
331 3ake_A Cytidylate kinase; CMP 95.0 0.011 3.7E-07 57.4 3.0 23 42-64 4-26 (208)
332 1tev_A UMP-CMP kinase; ploop, 95.0 0.012 4.1E-07 56.2 3.3 24 40-63 3-26 (196)
333 3con_A GTPase NRAS; structural 95.0 0.01 3.6E-07 56.4 2.8 24 42-65 23-46 (190)
334 1zj6_A ADP-ribosylation factor 95.0 0.011 3.7E-07 56.4 2.9 24 42-65 18-41 (187)
335 2a9k_A RAS-related protein RAL 95.0 0.011 3.7E-07 55.7 2.8 24 42-65 20-43 (187)
336 3t5g_A GTP-binding protein RHE 94.9 0.016 5.5E-07 54.5 4.0 23 42-64 8-30 (181)
337 2efe_B Small GTP-binding prote 94.9 0.012 3.9E-07 55.4 2.9 24 42-65 14-37 (181)
338 2wwf_A Thymidilate kinase, put 94.9 0.012 4.2E-07 57.2 3.2 24 40-63 10-33 (212)
339 2bme_A RAB4A, RAS-related prot 94.9 0.011 3.7E-07 55.9 2.6 24 42-65 12-35 (186)
340 1lv7_A FTSH; alpha/beta domain 94.9 0.011 3.9E-07 59.7 2.9 23 42-64 47-69 (257)
341 2bov_A RAla, RAS-related prote 94.9 0.011 3.9E-07 56.7 2.8 24 42-65 16-39 (206)
342 2dhr_A FTSH; AAA+ protein, hex 94.9 0.012 4.2E-07 66.2 3.3 22 43-64 67-88 (499)
343 2gf0_A GTP-binding protein DI- 94.8 0.012 4E-07 56.4 2.7 24 42-65 10-33 (199)
344 2bwj_A Adenylate kinase 5; pho 94.8 0.011 3.8E-07 56.9 2.5 23 42-64 14-36 (199)
345 1vg8_A RAS-related protein RAB 94.8 0.012 4.2E-07 56.7 2.8 24 42-65 10-33 (207)
346 2z0h_A DTMP kinase, thymidylat 94.8 0.014 4.7E-07 56.1 3.1 23 42-64 2-24 (197)
347 2gf9_A RAS-related protein RAB 94.8 0.013 4.3E-07 56.0 2.8 24 42-65 24-47 (189)
348 3ihw_A Centg3; RAS, centaurin, 94.8 0.013 4.5E-07 56.1 2.9 24 42-65 22-45 (184)
349 3t1o_A Gliding protein MGLA; G 94.8 0.013 4.4E-07 55.7 2.8 23 42-64 16-38 (198)
350 1nn5_A Similar to deoxythymidy 94.8 0.015 5.1E-07 56.7 3.3 25 40-64 9-33 (215)
351 3kkq_A RAS-related protein M-R 94.7 0.013 4.5E-07 55.3 2.8 24 42-65 20-43 (183)
352 3cbq_A GTP-binding protein REM 94.7 0.011 3.8E-07 57.3 2.3 23 42-64 25-47 (195)
353 1m7b_A RND3/RHOE small GTP-bin 94.7 0.013 4.4E-07 55.7 2.6 24 42-65 9-32 (184)
354 2x77_A ADP-ribosylation factor 94.7 0.011 3.7E-07 56.4 2.1 25 42-66 24-48 (189)
355 3tkl_A RAS-related protein RAB 94.7 0.014 4.7E-07 55.7 2.8 24 42-65 18-41 (196)
356 2aka_B Dynamin-1; fusion prote 94.7 0.012 4.3E-07 60.5 2.6 25 41-65 27-51 (299)
357 1nrj_B SR-beta, signal recogni 94.7 0.014 4.7E-07 57.1 2.8 24 42-65 14-37 (218)
358 1mh1_A RAC1; GTP-binding, GTPa 94.7 0.014 4.8E-07 54.9 2.8 24 42-65 7-30 (186)
359 2il1_A RAB12; G-protein, GDP, 94.6 0.014 4.8E-07 56.1 2.6 24 42-65 28-51 (192)
360 1zbd_A Rabphilin-3A; G protein 94.6 0.016 5.3E-07 55.9 2.9 24 42-65 10-33 (203)
361 2wsm_A Hydrogenase expression/ 94.6 0.015 5.3E-07 56.9 2.9 24 41-64 31-54 (221)
362 1z06_A RAS-related protein RAB 94.6 0.015 5.2E-07 55.4 2.8 24 42-65 22-45 (189)
363 3oes_A GTPase rhebl1; small GT 94.6 0.014 4.9E-07 56.4 2.6 24 42-65 26-49 (201)
364 3dz8_A RAS-related protein RAB 94.6 0.014 4.9E-07 55.8 2.6 24 42-65 25-48 (191)
365 2vli_A Antibiotic resistance p 94.5 0.015 5.1E-07 55.3 2.6 25 40-64 5-29 (183)
366 2a5j_A RAS-related protein RAB 94.5 0.016 5.5E-07 55.4 2.8 24 42-65 23-46 (191)
367 2bcg_Y Protein YP2, GTP-bindin 94.5 0.015 5.1E-07 56.3 2.6 24 42-65 10-33 (206)
368 2pbr_A DTMP kinase, thymidylat 94.5 0.018 6.3E-07 54.9 3.2 23 42-64 2-24 (195)
369 2o52_A RAS-related protein RAB 94.5 0.016 5.5E-07 56.1 2.8 24 42-65 27-50 (200)
370 3a1s_A Iron(II) transport prot 94.4 0.017 5.8E-07 59.1 3.0 24 42-65 7-30 (258)
371 3bwd_D RAC-like GTP-binding pr 94.4 0.017 5.9E-07 54.2 2.8 24 42-65 10-33 (182)
372 3cph_A RAS-related protein SEC 94.4 0.017 5.8E-07 55.9 2.8 24 42-65 22-45 (213)
373 3fb4_A Adenylate kinase; psych 94.4 0.019 6.4E-07 56.3 3.1 22 42-63 2-23 (216)
374 2b6h_A ADP-ribosylation factor 94.4 0.012 4.2E-07 56.7 1.8 24 42-65 31-54 (192)
375 2dby_A GTP-binding protein; GD 94.4 0.016 5.5E-07 62.7 2.8 23 42-64 3-25 (368)
376 2atv_A RERG, RAS-like estrogen 94.4 0.018 6E-07 55.4 2.8 24 42-65 30-53 (196)
377 2p5s_A RAS and EF-hand domain 94.4 0.017 5.9E-07 55.7 2.8 24 42-65 30-53 (199)
378 3reg_A RHO-like small GTPase; 94.4 0.018 6.2E-07 55.1 2.8 24 42-65 25-48 (194)
379 1e6c_A Shikimate kinase; phosp 94.3 0.018 6.3E-07 54.1 2.8 23 42-64 4-26 (173)
380 2ew1_A RAS-related protein RAB 94.3 0.017 5.8E-07 56.4 2.6 24 42-65 28-51 (201)
381 2fh5_B SR-beta, signal recogni 94.3 0.026 9E-07 54.9 3.9 24 42-65 9-32 (214)
382 3dm5_A SRP54, signal recogniti 94.3 0.033 1.1E-06 61.7 5.0 25 40-64 100-124 (443)
383 1qf9_A UMP/CMP kinase, protein 94.3 0.021 7.1E-07 54.4 3.0 24 41-64 7-30 (194)
384 1ukz_A Uridylate kinase; trans 94.2 0.023 8E-07 55.1 3.3 24 41-64 16-39 (203)
385 4ag6_A VIRB4 ATPase, type IV s 94.2 0.023 7.8E-07 61.5 3.6 23 42-64 37-59 (392)
386 2f7s_A C25KG, RAS-related prot 94.2 0.021 7.3E-07 55.7 3.0 24 42-65 27-50 (217)
387 2fv8_A H6, RHO-related GTP-bin 94.2 0.019 6.5E-07 55.8 2.7 24 42-65 27-50 (207)
388 1zd8_A GTP:AMP phosphotransfer 94.2 0.022 7.6E-07 56.6 3.1 24 41-64 8-31 (227)
389 2pt5_A Shikimate kinase, SK; a 94.2 0.024 8.3E-07 53.0 3.3 23 42-64 2-24 (168)
390 2cdn_A Adenylate kinase; phosp 94.2 0.026 9E-07 54.7 3.6 26 39-64 19-44 (201)
391 3c5c_A RAS-like protein 12; GD 94.2 0.021 7.2E-07 54.6 2.8 24 42-65 23-46 (187)
392 2fu5_C RAS-related protein RAB 94.2 0.014 4.9E-07 55.0 1.6 24 42-65 10-33 (183)
393 2q3h_A RAS homolog gene family 94.2 0.022 7.5E-07 54.7 3.0 24 42-65 22-45 (201)
394 3dl0_A Adenylate kinase; phosp 94.2 0.023 7.9E-07 55.8 3.1 22 42-63 2-23 (216)
395 2j1l_A RHO-related GTP-binding 94.1 0.022 7.5E-07 55.9 2.8 24 42-65 36-59 (214)
396 4djt_A GTP-binding nuclear pro 94.1 0.014 4.6E-07 57.1 1.3 24 42-65 13-36 (218)
397 1aky_A Adenylate kinase; ATP:A 94.1 0.027 9.1E-07 55.6 3.4 25 40-64 4-28 (220)
398 1uj2_A Uridine-cytidine kinase 94.1 0.024 8.2E-07 57.4 3.1 24 41-64 23-46 (252)
399 1gwn_A RHO-related GTP-binding 94.0 0.021 7.3E-07 55.8 2.6 24 42-65 30-53 (205)
400 2iyv_A Shikimate kinase, SK; t 94.0 0.023 7.8E-07 54.3 2.7 23 42-64 4-26 (184)
401 1zak_A Adenylate kinase; ATP:A 94.0 0.023 7.8E-07 56.2 2.8 24 41-64 6-29 (222)
402 1xp8_A RECA protein, recombina 94.0 0.077 2.6E-06 57.3 7.1 26 38-63 72-97 (366)
403 2gco_A H9, RHO-related GTP-bin 93.9 0.023 7.8E-07 55.0 2.6 24 42-65 27-50 (201)
404 3bos_A Putative DNA replicatio 93.9 0.028 9.5E-07 55.2 3.2 26 39-64 51-76 (242)
405 3cf0_A Transitional endoplasmi 93.9 0.027 9.2E-07 58.7 3.2 25 40-64 49-73 (301)
406 2atx_A Small GTP binding prote 93.9 0.025 8.5E-07 54.0 2.7 24 42-65 20-43 (194)
407 1a7j_A Phosphoribulokinase; tr 93.8 0.021 7.1E-07 59.7 2.2 24 41-64 6-29 (290)
408 2grj_A Dephospho-COA kinase; T 93.8 0.03 1E-06 54.9 3.1 23 41-63 13-35 (192)
409 3a4m_A L-seryl-tRNA(SEC) kinas 93.8 0.031 1.1E-06 57.0 3.4 25 40-64 4-28 (260)
410 1zuh_A Shikimate kinase; alpha 93.8 0.032 1.1E-06 52.4 3.2 26 39-64 6-31 (168)
411 1ypw_A Transitional endoplasmi 93.8 0.01 3.6E-07 70.6 -0.3 26 39-64 510-535 (806)
412 3cnl_A YLQF, putative uncharac 93.8 0.03 1E-06 57.6 3.2 23 42-64 101-123 (262)
413 2xb4_A Adenylate kinase; ATP-b 93.7 0.032 1.1E-06 55.5 3.2 22 42-63 2-23 (223)
414 3llm_A ATP-dependent RNA helic 93.7 0.031 1.1E-06 55.9 3.1 23 40-62 76-98 (235)
415 2yc2_C IFT27, small RAB-relate 93.7 0.014 4.9E-07 56.0 0.5 22 42-63 22-43 (208)
416 2hf9_A Probable hydrogenase ni 93.7 0.03 1E-06 55.1 2.8 25 41-65 39-63 (226)
417 2g3y_A GTP-binding protein GEM 93.7 0.031 1.1E-06 55.4 3.0 23 42-64 39-61 (211)
418 3gj0_A GTP-binding nuclear pro 93.6 0.023 8E-07 55.7 2.1 22 42-63 17-39 (221)
419 2hup_A RAS-related protein RAB 93.6 0.029 1E-06 54.4 2.7 24 42-65 31-54 (201)
420 4a9a_A Ribosome-interacting GT 93.6 0.024 8.2E-07 61.5 2.1 23 42-64 74-96 (376)
421 2f6r_A COA synthase, bifunctio 93.5 0.033 1.1E-06 57.7 3.1 23 40-62 75-97 (281)
422 2w58_A DNAI, primosome compone 93.5 0.036 1.2E-06 53.7 3.1 24 41-64 55-78 (202)
423 3cpj_B GTP-binding protein YPT 93.5 0.033 1.1E-06 54.8 2.9 24 42-65 15-38 (223)
424 1njg_A DNA polymerase III subu 93.4 0.043 1.5E-06 53.3 3.5 24 41-64 46-69 (250)
425 3tlx_A Adenylate kinase 2; str 93.3 0.042 1.4E-06 55.5 3.4 24 40-63 29-52 (243)
426 1l8q_A Chromosomal replication 93.3 0.034 1.2E-06 58.2 2.8 26 39-64 36-61 (324)
427 4gzl_A RAS-related C3 botulinu 93.3 0.035 1.2E-06 53.9 2.6 23 42-64 32-54 (204)
428 1e4v_A Adenylate kinase; trans 93.2 0.04 1.4E-06 54.1 3.0 22 42-63 2-23 (214)
429 1jbk_A CLPB protein; beta barr 93.2 0.049 1.7E-06 51.0 3.5 24 41-64 44-67 (195)
430 3q3j_B RHO-related GTP-binding 93.2 0.038 1.3E-06 54.2 2.8 24 42-65 29-52 (214)
431 2j0v_A RAC-like GTP-binding pr 93.1 0.038 1.3E-06 53.6 2.6 24 42-65 11-34 (212)
432 4b4t_M 26S protease regulatory 93.1 0.19 6.5E-06 55.5 8.4 23 42-64 217-239 (434)
433 3be4_A Adenylate kinase; malar 92.9 0.051 1.7E-06 53.6 3.3 25 40-64 5-29 (217)
434 1ltq_A Polynucleotide kinase; 92.9 0.048 1.6E-06 56.3 3.2 21 42-62 4-24 (301)
435 3l0i_B RAS-related protein RAB 92.9 0.017 6E-07 55.6 -0.3 24 42-65 35-58 (199)
436 4edh_A DTMP kinase, thymidylat 92.8 0.056 1.9E-06 53.8 3.3 26 39-64 5-30 (213)
437 4b4t_L 26S protease subunit RP 92.8 0.16 5.5E-06 56.1 7.3 23 42-64 217-239 (437)
438 3d3q_A TRNA delta(2)-isopenten 92.7 0.051 1.8E-06 58.1 3.1 23 42-64 9-31 (340)
439 3ld9_A DTMP kinase, thymidylat 92.7 0.062 2.1E-06 54.0 3.4 28 37-64 18-45 (223)
440 1puj_A YLQF, conserved hypothe 92.6 0.054 1.9E-06 56.3 3.0 56 41-104 121-178 (282)
441 2h92_A Cytidylate kinase; ross 92.6 0.053 1.8E-06 53.2 2.8 24 41-64 4-27 (219)
442 1ak2_A Adenylate kinase isoenz 92.5 0.067 2.3E-06 53.4 3.5 25 40-64 16-40 (233)
443 3v9p_A DTMP kinase, thymidylat 92.5 0.055 1.9E-06 54.6 2.9 26 39-64 24-49 (227)
444 3lv8_A DTMP kinase, thymidylat 92.5 0.063 2.2E-06 54.4 3.2 26 39-64 26-51 (236)
445 4b4t_K 26S protease regulatory 92.5 0.13 4.5E-06 56.7 6.0 23 42-64 208-230 (428)
446 1v5w_A DMC1, meiotic recombina 92.4 0.066 2.3E-06 57.1 3.5 26 38-63 120-145 (343)
447 4tmk_A Protein (thymidylate ki 92.4 0.067 2.3E-06 53.3 3.3 25 40-64 3-27 (213)
448 2ocp_A DGK, deoxyguanosine kin 92.4 0.065 2.2E-06 53.7 3.2 25 40-64 2-26 (241)
449 1wxq_A GTP-binding protein; st 92.3 0.056 1.9E-06 59.0 2.8 23 42-64 2-24 (397)
450 4b4t_J 26S protease regulatory 92.3 0.14 4.8E-06 56.0 5.9 23 42-64 184-206 (405)
451 3exa_A TRNA delta(2)-isopenten 92.3 0.07 2.4E-06 56.5 3.4 24 41-64 4-27 (322)
452 3umf_A Adenylate kinase; rossm 92.3 0.076 2.6E-06 53.2 3.5 25 40-64 29-53 (217)
453 2qmh_A HPR kinase/phosphorylas 92.3 0.074 2.5E-06 52.7 3.3 23 42-64 36-58 (205)
454 3th5_A RAS-related C3 botulinu 91.4 0.026 9E-07 54.5 0.0 24 42-65 32-55 (204)
455 2p65_A Hypothetical protein PF 92.1 0.063 2.1E-06 50.3 2.6 24 41-64 44-67 (187)
456 3p32_A Probable GTPase RV1496/ 92.1 0.071 2.4E-06 57.1 3.3 26 39-64 78-103 (355)
457 2qpt_A EH domain-containing pr 92.1 0.06 2.1E-06 61.3 2.8 25 41-65 66-90 (550)
458 3r7w_A Gtpase1, GTP-binding pr 92.1 0.067 2.3E-06 56.0 3.0 23 42-64 5-27 (307)
459 1p5z_B DCK, deoxycytidine kina 92.0 0.057 2E-06 54.9 2.4 26 39-64 23-48 (263)
460 3geh_A MNME, tRNA modification 92.0 0.078 2.7E-06 59.0 3.5 25 41-65 225-249 (462)
461 3zvl_A Bifunctional polynucleo 91.9 0.079 2.7E-06 58.1 3.5 26 39-64 257-282 (416)
462 1sky_E F1-ATPase, F1-ATP synth 91.9 0.07 2.4E-06 59.5 3.0 25 40-64 151-175 (473)
463 3crm_A TRNA delta(2)-isopenten 91.9 0.077 2.6E-06 56.3 3.2 23 42-64 7-29 (323)
464 2v3c_C SRP54, signal recogniti 91.9 0.061 2.1E-06 59.4 2.5 24 41-64 100-123 (432)
465 3vfd_A Spastin; ATPase, microt 91.9 0.15 5E-06 55.1 5.5 26 39-64 147-172 (389)
466 3tmk_A Thymidylate kinase; pho 91.7 0.087 3E-06 52.7 3.2 26 39-64 4-29 (216)
467 3hu3_A Transitional endoplasmi 91.7 0.1 3.4E-06 58.6 3.9 23 42-64 240-262 (489)
468 3a8t_A Adenylate isopentenyltr 91.6 0.092 3.2E-06 56.1 3.4 26 39-64 39-64 (339)
469 4b4t_I 26S protease regulatory 91.6 0.2 6.8E-06 55.2 6.2 23 42-64 218-240 (437)
470 1lnz_A SPO0B-associated GTP-bi 91.6 0.087 3E-06 56.3 3.3 23 42-64 160-182 (342)
471 1qvr_A CLPB protein; coiled co 91.6 0.2 6.9E-06 59.9 6.8 24 41-64 589-612 (854)
472 3ec1_A YQEH GTPase; atnos1, at 91.5 0.081 2.8E-06 57.1 2.8 22 42-63 164-185 (369)
473 1ko7_A HPR kinase/phosphatase; 91.4 0.087 3E-06 55.7 2.9 22 42-63 146-167 (314)
474 4dcu_A GTP-binding protein ENG 91.4 0.25 8.4E-06 54.6 6.7 25 40-64 195-219 (456)
475 1sxj_D Activator 1 41 kDa subu 91.4 0.094 3.2E-06 55.0 3.2 22 43-64 61-82 (353)
476 3sr0_A Adenylate kinase; phosp 91.4 0.099 3.4E-06 51.8 3.1 23 42-64 2-24 (206)
477 3foz_A TRNA delta(2)-isopenten 91.3 0.099 3.4E-06 55.2 3.2 24 41-64 11-34 (316)
478 2v1u_A Cell division control p 91.2 0.085 2.9E-06 55.7 2.7 26 39-64 43-68 (387)
479 4b4t_H 26S protease regulatory 90.9 0.19 6.4E-06 55.9 5.1 23 42-64 245-267 (467)
480 3h2y_A GTPase family protein; 90.8 0.09 3.1E-06 56.7 2.4 23 42-64 162-184 (368)
481 1yrb_A ATP(GTP)binding protein 90.7 0.14 4.7E-06 51.5 3.5 27 38-64 12-38 (262)
482 1mky_A Probable GTP-binding pr 90.6 0.12 4.1E-06 56.9 3.2 24 42-65 3-26 (439)
483 2qz4_A Paraplegin; AAA+, SPG7, 90.4 0.12 4.1E-06 51.7 2.9 23 42-64 41-63 (262)
484 2chg_A Replication factor C sm 90.4 0.13 4.4E-06 49.3 2.9 23 42-64 40-62 (226)
485 2z43_A DNA repair and recombin 90.4 0.13 4.5E-06 54.2 3.2 26 38-63 105-130 (324)
486 3qq5_A Small GTP-binding prote 90.4 0.068 2.3E-06 58.9 1.0 24 42-65 36-59 (423)
487 2j37_W Signal recognition part 90.4 0.14 4.6E-06 57.8 3.4 24 40-63 101-124 (504)
488 2hjg_A GTP-binding protein ENG 90.2 0.12 4.2E-06 56.7 2.9 25 41-65 176-200 (436)
489 4hlc_A DTMP kinase, thymidylat 90.2 0.15 5.3E-06 50.2 3.4 24 41-64 3-26 (205)
490 3sjy_A Translation initiation 90.1 0.14 4.7E-06 55.7 3.2 23 42-64 10-32 (403)
491 2orw_A Thymidine kinase; TMTK, 90.0 0.16 5.4E-06 49.2 3.2 23 40-62 3-26 (184)
492 3gee_A MNME, tRNA modification 90.0 0.11 3.7E-06 58.2 2.2 24 41-64 234-257 (476)
493 3eph_A TRNA isopentenyltransfe 90.0 0.14 4.7E-06 56.0 3.0 23 42-64 4-26 (409)
494 3n70_A Transport activator; si 89.9 0.16 5.4E-06 46.8 2.9 23 42-64 26-48 (145)
495 3o47_A ADP-ribosylation factor 89.8 0.11 3.8E-06 55.0 2.0 24 42-65 167-190 (329)
496 2r62_A Cell division protease 89.7 0.079 2.7E-06 53.6 0.7 22 43-64 47-68 (268)
497 3syl_A Protein CBBX; photosynt 89.7 0.17 5.9E-06 52.1 3.3 26 39-64 66-91 (309)
498 3c5h_A Glucocorticoid receptor 89.5 0.16 5.6E-06 51.4 2.9 22 42-63 21-51 (255)
499 2zts_A Putative uncharacterize 89.4 0.25 8.7E-06 48.7 4.2 23 38-60 28-50 (251)
500 2qby_B CDC6 homolog 3, cell di 89.3 0.19 6.5E-06 53.3 3.4 25 40-64 45-69 (384)
No 1
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.96 E-value=1.2e-29 Score=275.04 Aligned_cols=180 Identities=13% Similarity=0.171 Sum_probs=139.9
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeee---
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM--- 83 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~--- 83 (712)
++|++.|+++.|+ ..+|+++++++..|+ +++|+||||||||||||+|+|+. +|++|++...+....
T Consensus 3 ~~l~i~~ls~~y~~~~~L~~vsl~i~~Ge------~~~llGpsGsGKSTLLr~iaGl~----~p~~G~I~i~G~~i~~~~ 72 (359)
T 3fvq_A 3 AALHIGHLSKSFQNTPVLNDISLSLDPGE------ILFIIGASGCGKTTLLRCLAGFE----QPDSGEISLSGKTIFSKN 72 (359)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTC------EEEEEESTTSSHHHHHHHHHTSS----CCSEEEEEETTEEEESSS
T ss_pred cEEEEEeEEEEECCEEEEEeeEEEEcCCC------EEEEECCCCchHHHHHHHHhcCC----CCCCcEEEECCEECcccc
Confidence 3699999999995 457999999999999 99999999999999999999999 899999643321110
Q ss_pred ------ccccC-------CCccchhcccc-------CCCcc--------------------cccchhhHHHHHHHHHHHH
Q 005138 84 ------ARCAG-------IEPCTLIMDLE-------GTDGR--------------------ERGEDDTAFEKQSALFALA 123 (712)
Q Consensus 84 ------~~~~~-------~~~~~~v~d~~-------g~~~~--------------------~r~~~~~~ferQrv~~A~A 123 (712)
.+.++ ..+.+.|.+.. +.+.. ......+..||||++||+|
T Consensus 73 ~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArA 152 (359)
T 3fvq_A 73 TNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARA 152 (359)
T ss_dssp CBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred cccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHH
Confidence 11111 11222222221 11110 0112234459999999999
Q ss_pred HH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCccc
Q 005138 124 VS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (712)
Q Consensus 124 la---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e 200 (712)
|+ ++|||||||++||+.. +..+.+.+.++.++.|+|+|+||||++++..+||++++|.+ |+|+..|++.+
T Consensus 153 L~~~P~lLLLDEPts~LD~~~------r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~-G~i~~~g~~~e 225 (359)
T 3fvq_A 153 LAPDPELILLDEPFSALDEQL------RRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQ-GRILQTASPHE 225 (359)
T ss_dssp HTTCCSEEEEESTTTTSCHHH------HHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEET-TEEEEEECHHH
T ss_pred HHcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEEC-CEEEEEeCHHH
Confidence 99 9999999999999998 88999888887666699999999999999989999999999 99999999988
Q ss_pred ccCC
Q 005138 201 AHME 204 (712)
Q Consensus 201 ~~~~ 204 (712)
++..
T Consensus 226 l~~~ 229 (359)
T 3fvq_A 226 LYRQ 229 (359)
T ss_dssp HHHS
T ss_pred HHhC
Confidence 7654
No 2
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.96 E-value=8.1e-30 Score=267.74 Aligned_cols=182 Identities=13% Similarity=0.152 Sum_probs=139.4
Q ss_pred ccEEEEeeeeeec-c-ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee--
Q 005138 8 CSTQLIDGDGTFN-V-SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW-- 82 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~-~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~-- 82 (712)
++|++.|+++.|+ . .+|+++++++..|+ +++|+||||||||||||+|+|+. +|++|++...+. +.
T Consensus 6 ~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge------~~~iiGpnGsGKSTLl~~l~Gl~----~p~~G~I~~~G~~i~~~ 75 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTHALKGINMNIKRGE------VTAILGGNGVGKSTLFQNFNGIL----KPSSGRILFDNKPIDYS 75 (275)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEETTS------EEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEETTEECCCS
T ss_pred cEEEEEEEEEEECCCCeEEEeeEEEEcCCC------EEEEECCCCCCHHHHHHHHHcCC----CCCCeEEEECCEECCcc
Confidence 3699999999995 3 37999999999999 99999999999999999999999 899998543221 10
Q ss_pred ------eccccCC--C-c-----cchhcc-------ccCCCcc--------------------cccchhhHHHHHHHHHH
Q 005138 83 ------MARCAGI--E-P-----CTLIMD-------LEGTDGR--------------------ERGEDDTAFEKQSALFA 121 (712)
Q Consensus 83 ------~~~~~~~--~-~-----~~~v~d-------~~g~~~~--------------------~r~~~~~~ferQrv~~A 121 (712)
+...+++ . + ...+.+ ..+.+.. ......+..||||++||
T Consensus 76 ~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iA 155 (275)
T 3gfo_A 76 RKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIA 155 (275)
T ss_dssp HHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred cccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHH
Confidence 0111111 0 0 011111 1111111 11123345599999999
Q ss_pred HHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCc
Q 005138 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (712)
Q Consensus 122 ~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~ 198 (712)
+|++ ++|||||||++||+.. ...+++++.++.++.|+|||+||||++.+...|++++++.+ |+++..|++
T Consensus 156 raL~~~P~lLlLDEPts~LD~~~------~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~-G~i~~~g~~ 228 (275)
T 3gfo_A 156 GVLVMEPKVLILDEPTAGLDPMG------VSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKE-GRVILQGNP 228 (275)
T ss_dssp HHHTTCCSEEEEECTTTTCCHHH------HHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEET-TEEEEEECH
T ss_pred HHHHcCCCEEEEECccccCCHHH------HHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999 9999999999999998 99999999999732399999999999999989999999998 999999998
Q ss_pred ccccCCcc
Q 005138 199 PQAHMETP 206 (712)
Q Consensus 199 ~e~~~~~~ 206 (712)
.+++.+..
T Consensus 229 ~~~~~~~~ 236 (275)
T 3gfo_A 229 KEVFAEKE 236 (275)
T ss_dssp HHHTHHHH
T ss_pred HHHhcCHH
Confidence 87765433
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.96 E-value=1.2e-29 Score=276.80 Aligned_cols=180 Identities=14% Similarity=0.151 Sum_probs=140.9
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC------
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------ 80 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g------ 80 (712)
++|++.|+++.|+ ..+|+++++++..|+ +++|+||||||||||||+|+|+. +|++|++...+.
T Consensus 2 ~~l~~~~l~~~yg~~~~L~~vsl~i~~Ge------~~~llGpsGsGKSTLLr~iaGl~----~p~~G~I~i~G~~~~~~~ 71 (381)
T 3rlf_A 2 ASVQLQNVTKAWGEVVVSKDINLDIHEGE------FVVFVGPSGCGKSTLLRMIAGLE----TITSGDLFIGEKRMNDTP 71 (381)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTC------EEEEECCTTSSHHHHHHHHHTSS----CCSEEEEEETTEECTTCC
T ss_pred CEEEEEeEEEEECCEEEEeeeEEEECCCC------EEEEEcCCCchHHHHHHHHHcCC----CCCCeEEEECCEECCCCC
Confidence 3699999999995 457999999999999 99999999999999999999999 899998543221
Q ss_pred -----e-eeccccCCCccchhccc-------cCCCcc--------------------cccchhhHHHHHHHHHHHHHH--
Q 005138 81 -----I-WMARCAGIEPCTLIMDL-------EGTDGR--------------------ERGEDDTAFEKQSALFALAVS-- 125 (712)
Q Consensus 81 -----i-~~~~~~~~~~~~~v~d~-------~g~~~~--------------------~r~~~~~~ferQrv~~A~Ala-- 125 (712)
+ ++.+.....+.+.|.+. .+.+.. ......+..||||++||+||+
T Consensus 72 ~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~ 151 (381)
T 3rlf_A 72 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAE 151 (381)
T ss_dssp GGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHC
T ss_pred HHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcC
Confidence 1 01111111222222221 111111 111233455999999999999
Q ss_pred -HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccccCC
Q 005138 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHME 204 (712)
Q Consensus 126 -~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~~~ 204 (712)
++|||||||++||+.. +..+++.++++.++.|+|+|+||||++++..+||++++|.+ |+|+..|++.+++..
T Consensus 152 P~lLLLDEPts~LD~~~------~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~-G~i~~~g~~~~l~~~ 224 (381)
T 3rlf_A 152 PSVFLLDEPLSNLDAAL------RVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDA-GRVAQVGKPLELYHY 224 (381)
T ss_dssp CSEEEEESTTTTSCHHH------HHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEET-TEEEEEECHHHHHHC
T ss_pred CCEEEEECCCcCCCHHH------HHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEEC-CEEEEEeCHHHHHhC
Confidence 9999999999999998 99999999999766699999999999999999999999999 999999998887643
No 4
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.96 E-value=3.2e-29 Score=262.04 Aligned_cols=193 Identities=13% Similarity=0.110 Sum_probs=148.2
Q ss_pred cccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCe----
Q 005138 7 CCSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGI---- 81 (712)
Q Consensus 7 ~~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi---- 81 (712)
+++|++.|+++.|+ ..+|+++++++..|+ +++|+||||||||||||+|+|+. +|++|++...+.-
T Consensus 9 ~~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge------~~~liG~nGsGKSTLl~~l~Gl~----~p~~G~I~~~g~~~~~~ 78 (266)
T 4g1u_C 9 VALLEASHLHYHVQQQALINDVSLHIASGE------MVAIIGPNGAGKSTLLRLLTGYL----SPSHGECHLLGQNLNSW 78 (266)
T ss_dssp CCEEEEEEEEEEETTEEEEEEEEEEEETTC------EEEEECCTTSCHHHHHHHHTSSS----CCSSCEEEETTEETTTS
T ss_pred cceEEEEeEEEEeCCeeEEEeeEEEEcCCC------EEEEECCCCCcHHHHHHHHhcCC----CCCCcEEEECCEECCcC
Confidence 35799999999995 457999999999999 99999999999999999999999 8999985432210
Q ss_pred ----------eeccccCCCccchhcc-----------------------ccCCCc--ccccchhhHHHHHHHHHHHHHHH
Q 005138 82 ----------WMARCAGIEPCTLIMD-----------------------LEGTDG--RERGEDDTAFEKQSALFALAVSD 126 (712)
Q Consensus 82 ----------~~~~~~~~~~~~~v~d-----------------------~~g~~~--~~r~~~~~~ferQrv~~A~Ala~ 126 (712)
++...........+.+ ..|+.. .......+..||||++||+|++.
T Consensus 79 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~ 158 (266)
T 4g1u_C 79 QPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQ 158 (266)
T ss_dssp CHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHH
T ss_pred CHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 0101000111111111 111111 11122345669999999999985
Q ss_pred ---------HhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecC
Q 005138 127 ---------IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (712)
Q Consensus 127 ---------iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~ 197 (712)
+||+||||++||+.. ...++++++++.++.|+|+|+||||++.+...|++++++.+ |+++..|+
T Consensus 159 ~~~~~~~p~lLllDEPts~LD~~~------~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~-G~i~~~g~ 231 (266)
T 4g1u_C 159 LWQPQPTPRWLFLDEPTSALDLYH------QQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQ-GKLVACGT 231 (266)
T ss_dssp TCCSSCCCEEEEECCCCSSCCHHH------HHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEET-TEEEEEEC
T ss_pred ccccCCCCCEEEEeCccccCCHHH------HHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEEC-CEEEEEcC
Confidence 899999999999998 99999999999766568999999999999888999999999 99999999
Q ss_pred cccccCCccchhhhccccc
Q 005138 198 KPQAHMETPLSEFFNVEVV 216 (712)
Q Consensus 198 ~~e~~~~~~l~d~f~~~~~ 216 (712)
+.+++....+.+.|+..+.
T Consensus 232 ~~~~~~~~~l~~~~~~~~~ 250 (266)
T 4g1u_C 232 PEEVLNAETLTQWYQADLG 250 (266)
T ss_dssp HHHHCCHHHHHHHCCSCEE
T ss_pred HHHHhCcHHHHHHhCCCcE
Confidence 9888776677777766543
No 5
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.95 E-value=1.8e-29 Score=274.01 Aligned_cols=182 Identities=11% Similarity=0.134 Sum_probs=140.6
Q ss_pred CcccEEEEeeeeeecc-----ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC
Q 005138 6 ECCSTQLIDGDGTFNV-----SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG 80 (712)
Q Consensus 6 ~~~~I~l~~l~k~y~~-----~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g 80 (712)
+.++|++.|+++.|+. .+|++++|++..|+ +++|+||||||||||||+|+|+. +|++|++...+.
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Ge------i~~IiGpnGaGKSTLlr~i~GL~----~p~~G~I~i~G~ 90 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQ------IYGVIGASGAGKSTLIRCVNLLE----RPTEGSVLVDGQ 90 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTC------EEEEECCTTSSHHHHHHHHHTSS----CCSEEEEEETTE
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCC------EEEEEcCCCchHHHHHHHHhcCC----CCCceEEEECCE
Confidence 3458999999999952 37999999999999 99999999999999999999999 899998543221
Q ss_pred ee----------eccccC-------CCccchhcc-------ccCCCcc--------------------cccchhhHHHHH
Q 005138 81 IW----------MARCAG-------IEPCTLIMD-------LEGTDGR--------------------ERGEDDTAFEKQ 116 (712)
Q Consensus 81 i~----------~~~~~~-------~~~~~~v~d-------~~g~~~~--------------------~r~~~~~~ferQ 116 (712)
-. .++.++ ..+...|.+ ..+.+.. ......+..|||
T Consensus 91 ~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQ 170 (366)
T 3tui_C 91 ELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQ 170 (366)
T ss_dssp ECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHH
T ss_pred ECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHH
Confidence 00 011111 111111111 1121111 111233455999
Q ss_pred HHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEE
Q 005138 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (712)
Q Consensus 117 rv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~ 193 (712)
|++||+||+ ++||+||||++||+.. ...++++++++.++.|+|||+||||++.+..+|+++++|.+ |+++
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~LD~~~------~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~-G~iv 243 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSALDPAT------TRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISN-GELI 243 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTSCHHH------HHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEET-TEEE
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHH------HHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEEC-CEEE
Confidence 999999999 9999999999999998 99999999999866699999999999999989999999999 9999
Q ss_pred EecCcccccCC
Q 005138 194 DSVPKPQAHME 204 (712)
Q Consensus 194 ~~g~~~e~~~~ 204 (712)
..|++.+++.+
T Consensus 244 ~~g~~~ev~~~ 254 (366)
T 3tui_C 244 EQDTVSEVFSH 254 (366)
T ss_dssp ECCBHHHHHSS
T ss_pred EEcCHHHHHhC
Confidence 99998887654
No 6
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.95 E-value=1.5e-28 Score=255.75 Aligned_cols=176 Identities=13% Similarity=0.059 Sum_probs=135.2
Q ss_pred cccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee---
Q 005138 7 CCSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW--- 82 (712)
Q Consensus 7 ~~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~--- 82 (712)
+++|++.|+++.|+ ..+|++++++++.|+ +++|+||||||||||||+|+|+. +|++|++...+.-.
T Consensus 5 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge------~~~liG~nGsGKSTLlk~l~Gl~----~p~~G~i~~~g~~~~~~ 74 (257)
T 1g6h_A 5 MEILRTENIVKYFGEFKALDGVSISVNKGD------VTLIIGPNGSGKSTLINVITGFL----KADEGRVYFENKDITNK 74 (257)
T ss_dssp CEEEEEEEEEEEETTEEEEEEECCEEETTC------EEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEETTEECTTC
T ss_pred CcEEEEeeeEEEECCEeeEeeeEEEEeCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCEECCCC
Confidence 44799999999995 457999999999999 99999999999999999999999 89999854322100
Q ss_pred -----eccccCC-------Cccchhcccc---------C-----------CCcc--------------------cccchh
Q 005138 83 -----MARCAGI-------EPCTLIMDLE---------G-----------TDGR--------------------ERGEDD 110 (712)
Q Consensus 83 -----~~~~~~~-------~~~~~v~d~~---------g-----------~~~~--------------------~r~~~~ 110 (712)
....+++ .+...+.+.. + .... ......
T Consensus 75 ~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 154 (257)
T 1g6h_A 75 EPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGEL 154 (257)
T ss_dssp CHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGS
T ss_pred CHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhC
Confidence 0011111 1111111110 1 0000 001122
Q ss_pred hHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccccccccee
Q 005138 111 TAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRE 187 (712)
Q Consensus 111 ~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~ 187 (712)
+..||||++||+|++ ++|||||||++||+.. ...+++.+.++.++ |+|||+||||++.+...|++++++.
T Consensus 155 SgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~------~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~ 227 (257)
T 1g6h_A 155 SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGL------AHDIFNHVLELKAK-GITFLIIEHRLDIVLNYIDHLYVMF 227 (257)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHH------HHHHHHHHHHHHHT-TCEEEEECSCCSTTGGGCSEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHH------HHHHHHHHHHHHHC-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 344999999999999 9999999999999998 99999999999765 9999999999999988999999998
Q ss_pred cCCeEEEecCccc
Q 005138 188 DIQKIWDSVPKPQ 200 (712)
Q Consensus 188 ~~G~I~~~g~~~e 200 (712)
+ |+++..|++++
T Consensus 228 ~-G~i~~~g~~~~ 239 (257)
T 1g6h_A 228 N-GQIIAEGRGEE 239 (257)
T ss_dssp T-TEEEEEEESHH
T ss_pred C-CEEEEEeCHHH
Confidence 8 99999888766
No 7
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.95 E-value=1.6e-28 Score=268.10 Aligned_cols=179 Identities=14% Similarity=0.177 Sum_probs=139.2
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeec---
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMA--- 84 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~--- 84 (712)
+|++.|+++.|+ ..+|+++++++..|+ +++|+||||||||||||+|+|+. +|++|++...+.....
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge------~~~llGpnGsGKSTLLr~iaGl~----~p~~G~I~i~g~~~~~~~~ 72 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGE------FMILLGPSGCGKTTTLRMIAGLE----EPSRGQIYIGDKLVADPEK 72 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTC------EEEEECSTTSSHHHHHHHHHTSS----CCSEEEEEETTEEEEEGGG
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCC------EEEEECCCCcHHHHHHHHHHcCC----CCCccEEEECCEECccccc
Confidence 699999999995 347999999999999 99999999999999999999999 8999996443211100
Q ss_pred --------cccC-------CCccchhccc-------cCCCcc--------------------cccchhhHHHHHHHHHHH
Q 005138 85 --------RCAG-------IEPCTLIMDL-------EGTDGR--------------------ERGEDDTAFEKQSALFAL 122 (712)
Q Consensus 85 --------~~~~-------~~~~~~v~d~-------~g~~~~--------------------~r~~~~~~ferQrv~~A~ 122 (712)
+.++ ..+.+.+.+. .+.+.. ......+..||||++||+
T Consensus 73 ~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalAr 152 (372)
T 1g29_1 73 GIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGR 152 (372)
T ss_dssp TEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred cccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHH
Confidence 1111 1111122111 111111 011223445999999999
Q ss_pred HHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcc
Q 005138 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (712)
Q Consensus 123 Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~ 199 (712)
|++ ++|||||||++||+.. +..+.+.++++.++.|+|+|+||||++++..+||++++|.+ |+|+..|++.
T Consensus 153 AL~~~P~lLLLDEP~s~LD~~~------r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~-G~i~~~g~~~ 225 (372)
T 1g29_1 153 AIVRKPQVFLMDEPLSNLDAKL------RVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNR-GVLQQVGSPD 225 (372)
T ss_dssp HHHTCCSEEEEECTTTTSCHHH------HHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEET-TEEEEEECHH
T ss_pred HHhcCCCEEEECCCCccCCHHH------HHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeC-CEEEEeCCHH
Confidence 999 9999999999999998 99999999998765689999999999999889999999998 9999999988
Q ss_pred cccCC
Q 005138 200 QAHME 204 (712)
Q Consensus 200 e~~~~ 204 (712)
+++..
T Consensus 226 ~l~~~ 230 (372)
T 1g29_1 226 EVYDK 230 (372)
T ss_dssp HHHHS
T ss_pred HHHhC
Confidence 87644
No 8
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.95 E-value=1.2e-28 Score=267.68 Aligned_cols=179 Identities=15% Similarity=0.139 Sum_probs=138.9
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-------
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------- 80 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g------- 80 (712)
+|++.|+++.|+ ..+|++++++++.|+ +++|+||||||||||||+|+|+. +|++|++...+.
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge------~~~llGpnGsGKSTLLr~iaGl~----~p~~G~I~i~g~~i~~~~~ 72 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGE------FVALLGPSGCGKTTTLLMLAGIY----KPTSGEIYFDDVLVNDIPP 72 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTC------EEEEECSTTSSHHHHHHHHHTSS----CCSEEEEEETTEECTTSCG
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCC------EEEEEcCCCchHHHHHHHHHCCC----CCCccEEEECCEECCCCCh
Confidence 699999999995 347999999999999 99999999999999999999999 899998543221
Q ss_pred ----e-eeccccCCCccchhcccc-------------------------CCCcc--cccchhhHHHHHHHHHHHHHH---
Q 005138 81 ----I-WMARCAGIEPCTLIMDLE-------------------------GTDGR--ERGEDDTAFEKQSALFALAVS--- 125 (712)
Q Consensus 81 ----i-~~~~~~~~~~~~~v~d~~-------------------------g~~~~--~r~~~~~~ferQrv~~A~Ala--- 125 (712)
+ ++.+.....+.+.+.+.. |+... ......+..||||+++|+|++
T Consensus 73 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P 152 (359)
T 2yyz_A 73 KYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQP 152 (359)
T ss_dssp GGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 1 011111111222222211 11100 011223455999999999999
Q ss_pred HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccccCC
Q 005138 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHME 204 (712)
Q Consensus 126 ~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~~~ 204 (712)
++|||||||++||+.. +..+.+.++++.++.|+|+|+||||++++..+||++++|.+ |+|+..|++.+++..
T Consensus 153 ~lLLLDEP~s~LD~~~------r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~-G~i~~~g~~~~l~~~ 224 (359)
T 2yyz_A 153 KVLLFDEPLSNLDANL------RMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQ-GKLVQYGTPDEVYDS 224 (359)
T ss_dssp SEEEEESTTTTSCHHH------HHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEET-TEEEEEECHHHHHHS
T ss_pred CEEEEECCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEEC-CEEEEeCCHHHHHhC
Confidence 9999999999999998 99999999998765689999999999999888999999998 999999998887654
No 9
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.95 E-value=1.3e-28 Score=255.94 Aligned_cols=179 Identities=12% Similarity=0.097 Sum_probs=136.5
Q ss_pred CcccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC----
Q 005138 6 ECCSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG---- 80 (712)
Q Consensus 6 ~~~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g---- 80 (712)
.|.+|++.|+++.|+ ..+|+++++++..|+ +++|+||||||||||||+|+|+. +|++|++...+.
T Consensus 12 ~~~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge------i~~l~G~NGsGKSTLlk~l~Gl~----~p~~G~I~~~g~~~~~ 81 (256)
T 1vpl_A 12 HMGAVVVKDLRKRIGKKEILKGISFEIEEGE------IFGLIGPNGAGKTTTLRIISTLI----KPSSGIVTVFGKNVVE 81 (256)
T ss_dssp --CCEEEEEEEEEETTEEEEEEEEEEECTTC------EEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEETTEETTT
T ss_pred cCCeEEEEEEEEEECCEEEEEeeEEEEcCCc------EEEEECCCCCCHHHHHHHHhcCC----CCCceEEEECCEECCc
Confidence 356899999999995 457999999999999 99999999999999999999999 899998643221
Q ss_pred --------e-eeccccCCCccchhccc-------c------------------CCCc--ccccchhhHHHHHHHHHHHHH
Q 005138 81 --------I-WMARCAGIEPCTLIMDL-------E------------------GTDG--RERGEDDTAFEKQSALFALAV 124 (712)
Q Consensus 81 --------i-~~~~~~~~~~~~~v~d~-------~------------------g~~~--~~r~~~~~~ferQrv~~A~Al 124 (712)
+ ++.......+...+.+. . |+.. .......+..||||++||+|+
T Consensus 82 ~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL 161 (256)
T 1vpl_A 82 EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARAL 161 (256)
T ss_dssp CHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHH
T ss_pred cHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 0 11111111111111111 1 1111 011122345599999999999
Q ss_pred H---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccc
Q 005138 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (712)
Q Consensus 125 a---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~ 201 (712)
+ ++|||||||++||+.. ...+++++.++.++ |+|||+||||++.+...|++++++.+ |+++..|++.++
T Consensus 162 ~~~p~lllLDEPts~LD~~~------~~~l~~~l~~l~~~-g~tiiivtHd~~~~~~~~d~v~~l~~-G~i~~~g~~~~~ 233 (256)
T 1vpl_A 162 MVNPRLAILDEPTSGLDVLN------AREVRKILKQASQE-GLTILVSSHNMLEVEFLCDRIALIHN-GTIVETGTVEEL 233 (256)
T ss_dssp TTCCSEEEEESTTTTCCHHH------HHHHHHHHHHHHHT-TCEEEEEECCHHHHTTTCSEEEEEET-TEEEEEEEHHHH
T ss_pred HcCCCEEEEeCCccccCHHH------HHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHHCCEEEEEEC-CEEEEecCHHHH
Confidence 9 9999999999999998 99999999998754 89999999999998888999999988 999998887665
Q ss_pred c
Q 005138 202 H 202 (712)
Q Consensus 202 ~ 202 (712)
.
T Consensus 234 ~ 234 (256)
T 1vpl_A 234 K 234 (256)
T ss_dssp H
T ss_pred H
Confidence 3
No 10
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.95 E-value=1.4e-28 Score=267.47 Aligned_cols=179 Identities=15% Similarity=0.145 Sum_probs=139.2
Q ss_pred cEEEEeeeeeecc-ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-------
Q 005138 9 STQLIDGDGTFNV-SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------- 80 (712)
Q Consensus 9 ~I~l~~l~k~y~~-~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g------- 80 (712)
+|++.|+++.|+. .+|++++++++.|+ +++|+||||||||||||+|+|+. +|++|++...+.
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge------~~~llGpnGsGKSTLLr~iaGl~----~p~~G~I~i~g~~i~~~~~ 72 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGE------FMALLGPSGSGKSTLLYTIAGIY----KPTSGKIYFDEKDVTELPP 72 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTC------EEEEECCTTSSHHHHHHHHHTSS----CCSEEEEEETTEECTTSCG
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCC------EEEEECCCCchHHHHHHHHhcCC----CCCceEEEECCEECCcCCH
Confidence 6999999999953 47999999999999 99999999999999999999999 899998543221
Q ss_pred ----e-eeccccCCCccchhccc-------------------------cCCCc--ccccchhhHHHHHHHHHHHHHH---
Q 005138 81 ----I-WMARCAGIEPCTLIMDL-------------------------EGTDG--RERGEDDTAFEKQSALFALAVS--- 125 (712)
Q Consensus 81 ----i-~~~~~~~~~~~~~v~d~-------------------------~g~~~--~~r~~~~~~ferQrv~~A~Ala--- 125 (712)
+ ++.+.....+.+.+.+. .|+.. .......+..||||+++|+|++
T Consensus 73 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P 152 (362)
T 2it1_A 73 KDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEP 152 (362)
T ss_dssp GGTTEEEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred hHCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence 1 11111111111122111 11111 0111233455999999999999
Q ss_pred HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccccCC
Q 005138 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHME 204 (712)
Q Consensus 126 ~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~~~ 204 (712)
++|||||||++||+.. +..+.+.++++.++.|+|+|+||||++++..+||++++|.+ |+|+..|++.+++..
T Consensus 153 ~lLLLDEP~s~LD~~~------r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~-G~i~~~g~~~~~~~~ 224 (362)
T 2it1_A 153 EVLLLDEPLSNLDALL------RLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIRE-GEILQVGTPDEVYYK 224 (362)
T ss_dssp SEEEEESGGGGSCHHH------HHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEET-TEEEEEECHHHHHHS
T ss_pred CEEEEECccccCCHHH------HHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEEC-CEEEEEcCHHHHHhC
Confidence 9999999999999998 99999999998765589999999999999888999999998 999999998887654
No 11
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.95 E-value=2.4e-28 Score=253.64 Aligned_cols=188 Identities=14% Similarity=0.217 Sum_probs=142.4
Q ss_pred cEEEEeeeeeec-c-ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCe-eecc
Q 005138 9 STQLIDGDGTFN-V-SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGI-WMAR 85 (712)
Q Consensus 9 ~I~l~~l~k~y~-~-~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi-~~~~ 85 (712)
+|++.|+++.|+ . .+|+++++++..|+ +++|+||||||||||||+|+|+. +|++|++.....+ ++..
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge------~~~l~G~nGsGKSTLl~~l~Gl~----~p~~G~I~~~~~i~~v~q 73 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGD------ILAVLGQNGCGKSTLLDLLLGIH----RPIQGKIEVYQSIGFVPQ 73 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTC------EEEEECCSSSSHHHHHHHHTTSS----CCSEEEEEECSCEEEECS
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEEeccEEEEcC
Confidence 699999999996 3 47999999999999 99999999999999999999999 8999986422221 1111
Q ss_pred ccCCCccchhccc-----------------------------cCCCcc--cccchhhHHHHHHHHHHHHHH---HHhhhc
Q 005138 86 CAGIEPCTLIMDL-----------------------------EGTDGR--ERGEDDTAFEKQSALFALAVS---DIVLIN 131 (712)
Q Consensus 86 ~~~~~~~~~v~d~-----------------------------~g~~~~--~r~~~~~~ferQrv~~A~Ala---~iLlLD 131 (712)
.....+...+.+. .|+... ......+..||||++||+|++ ++||||
T Consensus 74 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLD 153 (253)
T 2nq2_C 74 FFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLD 153 (253)
T ss_dssp CCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEES
T ss_pred CCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 1111111111111 111110 111233455999999999999 999999
Q ss_pred cccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccccCCccchhhh
Q 005138 132 MWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHMETPLSEFF 211 (712)
Q Consensus 132 EP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~~~~~l~d~f 211 (712)
|||++||+.. ...+++.+.++.++.|+|||+||||++.+...|++++++.+ |+ +..|++++++....+.+.|
T Consensus 154 EPts~LD~~~------~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~-G~-~~~g~~~~~~~~~~~~~~~ 225 (253)
T 2nq2_C 154 EPTSALDLAN------QDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNK-QN-FKFGETRNILTSENLTALF 225 (253)
T ss_dssp SSSTTSCHHH------HHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEET-TE-EEEEEHHHHCCHHHHHHHH
T ss_pred CCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeC-Ce-EecCCHHHHhCcHHHHHHh
Confidence 9999999998 99999999998765589999999999998888999999988 99 8888877766544455555
Q ss_pred ccc
Q 005138 212 NVE 214 (712)
Q Consensus 212 ~~~ 214 (712)
+..
T Consensus 226 ~~~ 228 (253)
T 2nq2_C 226 HLP 228 (253)
T ss_dssp TSC
T ss_pred CCC
Confidence 544
No 12
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.95 E-value=1.3e-28 Score=267.07 Aligned_cols=179 Identities=12% Similarity=0.104 Sum_probs=139.2
Q ss_pred cEEEEeeeeeec-cc--cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeee--
Q 005138 9 STQLIDGDGTFN-VS--GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM-- 83 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~--~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~-- 83 (712)
+|++.|+++.|+ .. +|++++++++.|+ +++|+||||||||||||+|+|+. +|++|++...+....
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge------~~~llGpnGsGKSTLLr~iaGl~----~p~~G~I~i~g~~i~~~ 72 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGE------RFGILGPSGAGKTTFMRIIAGLD----VPSTGELYFDDRLVASN 72 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTC------EEEEECSCHHHHHHHHHHHHTSS----CCSEEEEEETTEEEEET
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCC------EEEEECCCCCcHHHHHHHHhCCC----CCCceEEEECCEECccc
Confidence 699999999995 45 8999999999999 99999999999999999999999 899998643321110
Q ss_pred --------ccccC-------CCccchhcccc-------CCCcc--------------------cccchhhHHHHHHHHHH
Q 005138 84 --------ARCAG-------IEPCTLIMDLE-------GTDGR--------------------ERGEDDTAFEKQSALFA 121 (712)
Q Consensus 84 --------~~~~~-------~~~~~~v~d~~-------g~~~~--------------------~r~~~~~~ferQrv~~A 121 (712)
.+.++ ..+.+.+.+.. +.+.. ......+..||||++||
T Consensus 73 ~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalA 152 (353)
T 1oxx_K 73 GKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALA 152 (353)
T ss_dssp TEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred ccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence 01111 11222222211 11110 01122344599999999
Q ss_pred HHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCc
Q 005138 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (712)
Q Consensus 122 ~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~ 198 (712)
+|++ ++|||||||++||+.. +..+.+.++++.++.|+|+|+||||++++..+|+++++|.+ |+|+..|++
T Consensus 153 raL~~~P~lLLLDEP~s~LD~~~------r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~-G~i~~~g~~ 225 (353)
T 1oxx_K 153 RALVKDPSLLLLDEPFSNLDARM------RDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVK-GKLVQVGKP 225 (353)
T ss_dssp HHHTTCCSEEEEESTTTTSCGGG------HHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHhCCCEEEEECCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEEcCH
Confidence 9999 9999999999999998 99999999998765689999999999999888999999998 999999998
Q ss_pred ccccCC
Q 005138 199 PQAHME 204 (712)
Q Consensus 199 ~e~~~~ 204 (712)
.+++..
T Consensus 226 ~~l~~~ 231 (353)
T 1oxx_K 226 EDLYDN 231 (353)
T ss_dssp HHHHHS
T ss_pred HHHHhC
Confidence 887644
No 13
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.95 E-value=2.9e-28 Score=250.26 Aligned_cols=174 Identities=17% Similarity=0.205 Sum_probs=133.2
Q ss_pred cEEEEeeeeeecc-----ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC---
Q 005138 9 STQLIDGDGTFNV-----SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG--- 80 (712)
Q Consensus 9 ~I~l~~l~k~y~~-----~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g--- 80 (712)
+|++.|+++.|+. .+|+++++++..|+ +++|+||||||||||||+|+|+. +|++|++...+.
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge------~~~iiG~nGsGKSTLl~~l~Gl~----~p~~G~I~~~g~~~~ 70 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGE------FVSIMGPSGSGKSTMLNIIGCLD----KPTEGEVYIDNIKTN 70 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTC------EEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEETTEECT
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCC------EEEEECCCCCcHHHHHHHHhcCC----CCCceEEEECCEEcc
Confidence 4899999999952 37999999999999 99999999999999999999999 899998543221
Q ss_pred --------------e-eeccccCCCccchhcc----------------------------ccCCCc---ccccchhhHHH
Q 005138 81 --------------I-WMARCAGIEPCTLIMD----------------------------LEGTDG---RERGEDDTAFE 114 (712)
Q Consensus 81 --------------i-~~~~~~~~~~~~~v~d----------------------------~~g~~~---~~r~~~~~~fe 114 (712)
+ ++.......+...+.+ ..|+.. .......+..|
T Consensus 71 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 150 (235)
T 3tif_A 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQ 150 (235)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHH
T ss_pred cCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHH
Confidence 0 1111111111111111 112221 11223445669
Q ss_pred HHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCe
Q 005138 115 KQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQK 191 (712)
Q Consensus 115 rQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~ 191 (712)
|||++||+|++ ++||+||||++||+.. ...+++.+.++.++.|+|||+||||++.+ ..|++++++.+ |+
T Consensus 151 ~QRv~iAral~~~p~llllDEPts~LD~~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~-G~ 222 (235)
T 3tif_A 151 QQRVAIARALANNPPIILADQPTWALDSKT------GEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKD-GE 222 (235)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHH------HHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEET-TE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEEC-CE
Confidence 99999999999 9999999999999999 99999999999765589999999999855 67999999998 99
Q ss_pred EEEecCccc
Q 005138 192 IWDSVPKPQ 200 (712)
Q Consensus 192 I~~~g~~~e 200 (712)
++..+++.+
T Consensus 223 i~~~~~~~~ 231 (235)
T 3tif_A 223 VEREEKLRG 231 (235)
T ss_dssp EEEEEECC-
T ss_pred EEEEcChhh
Confidence 999887655
No 14
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.95 E-value=1.6e-28 Score=256.30 Aligned_cols=177 Identities=16% Similarity=0.157 Sum_probs=136.5
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee---
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW--- 82 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~--- 82 (712)
++|++.|+++.|+ ..+|+++++++..|+ +++|+||||||||||||+|+|+. +|++|++...+. +.
T Consensus 23 ~~l~i~~l~~~y~~~~vL~~vsl~i~~Ge------i~~liG~NGsGKSTLlk~l~Gl~----~p~~G~I~~~g~~i~~~~ 92 (263)
T 2olj_A 23 QMIDVHQLKKSFGSLEVLKGINVHIREGE------VVVVIGPSGSGKSTFLRCLNLLE----DFDEGEIIIDGINLKAKD 92 (263)
T ss_dssp CSEEEEEEEEEETTEEEEEEEEEEECTTC------EEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEETTEESSSTT
T ss_pred heEEEEeEEEEECCEEEEEeeEEEEcCCC------EEEEEcCCCCcHHHHHHHHHcCC----CCCCcEEEECCEECCCcc
Confidence 4799999999995 357999999999999 99999999999999999999999 899998643221 10
Q ss_pred -----eccccC-------CCccchhcc--------ccCCCcc--------------------cccchhhHHHHHHHHHHH
Q 005138 83 -----MARCAG-------IEPCTLIMD--------LEGTDGR--------------------ERGEDDTAFEKQSALFAL 122 (712)
Q Consensus 83 -----~~~~~~-------~~~~~~v~d--------~~g~~~~--------------------~r~~~~~~ferQrv~~A~ 122 (712)
+.+.++ ..+...+.+ ..+.... ......+..||||++||+
T Consensus 93 ~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAr 172 (263)
T 2olj_A 93 TNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIAR 172 (263)
T ss_dssp CCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred ccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHH
Confidence 001111 111111111 1111110 011223445999999999
Q ss_pred HHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcc
Q 005138 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (712)
Q Consensus 123 Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~ 199 (712)
|++ ++|||||||++||+.. ...+++.+.++.++ |+|||+||||++.+...|++++++.+ |+++..|++.
T Consensus 173 aL~~~p~lllLDEPts~LD~~~------~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~-G~i~~~g~~~ 244 (263)
T 2olj_A 173 ALAMEPKIMLFDEPTSALDPEM------VGEVLSVMKQLANE-GMTMVVVTHEMGFAREVGDRVLFMDG-GYIIEEGKPE 244 (263)
T ss_dssp HHTTCCSEEEEESTTTTSCHHH------HHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEET-TEEEEEECHH
T ss_pred HHHCCCCEEEEeCCcccCCHHH------HHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999 9999999999999998 99999999999766 99999999999998888999999988 9999998876
Q ss_pred ccc
Q 005138 200 QAH 202 (712)
Q Consensus 200 e~~ 202 (712)
+++
T Consensus 245 ~~~ 247 (263)
T 2olj_A 245 DLF 247 (263)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 15
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.95 E-value=1.6e-28 Score=267.76 Aligned_cols=181 Identities=14% Similarity=0.164 Sum_probs=138.6
Q ss_pred cccEEEEeeeeeecc-ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee---
Q 005138 7 CCSTQLIDGDGTFNV-SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW--- 82 (712)
Q Consensus 7 ~~~I~l~~l~k~y~~-~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~--- 82 (712)
|.+|++.|+++.|+. .+|+++++++..|+ +++|+||||||||||||+|+|+. +|++|++...+...
T Consensus 9 M~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge------~~~llGpnGsGKSTLLr~iaGl~----~p~~G~I~i~g~~i~~~ 78 (372)
T 1v43_A 9 MVEVKLENLTKRFGNFTAVNKLNLTIKDGE------FLVLLGPSGCGKTTTLRMIAGLE----EPTEGRIYFGDRDVTYL 78 (372)
T ss_dssp CCCEEEEEEEEEETTEEEEEEEEEEECTTC------EEEEECCTTSSHHHHHHHHHTSS----CCSEEEEEETTEECTTS
T ss_pred eeeEEEEEEEEEECCEEEEeeeEEEECCCC------EEEEECCCCChHHHHHHHHHcCC----CCCceEEEECCEECCCC
Confidence 446999999999953 47999999999999 99999999999999999999999 89999864322110
Q ss_pred --eccccC-------CCccchhcccc-------CCCccc---c-----------------cchhhHHHHHHHHHHHHHH-
Q 005138 83 --MARCAG-------IEPCTLIMDLE-------GTDGRE---R-----------------GEDDTAFEKQSALFALAVS- 125 (712)
Q Consensus 83 --~~~~~~-------~~~~~~v~d~~-------g~~~~~---r-----------------~~~~~~ferQrv~~A~Ala- 125 (712)
..+.++ ..+.+.+.+.. +.+..+ + ....+..||||++||+|++
T Consensus 79 ~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~ 158 (372)
T 1v43_A 79 PPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVV 158 (372)
T ss_dssp CGGGGTEEEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred ChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 001111 11222222221 111110 0 0111222999999999999
Q ss_pred --HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccccC
Q 005138 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (712)
Q Consensus 126 --~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~~ 203 (712)
++|||||||++||+.. +..+.+.++++.++.|+|+|+||||++++..+||++++|.+ |+|+..|++.+++.
T Consensus 159 ~P~lLLLDEP~s~LD~~~------r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~-G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 159 EPDVLLMDEPLSNLDAKL------RVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNR-GQLLQIGSPTEVYL 231 (372)
T ss_dssp CCSEEEEESTTTTSCHHH------HHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEET-TEEEEEECHHHHHH
T ss_pred CCCEEEEcCCCccCCHHH------HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEeCCHHHHHh
Confidence 9999999999999998 99999999998765689999999999999888999999998 99999999888764
Q ss_pred C
Q 005138 204 E 204 (712)
Q Consensus 204 ~ 204 (712)
.
T Consensus 232 ~ 232 (372)
T 1v43_A 232 R 232 (372)
T ss_dssp C
T ss_pred C
Confidence 4
No 16
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.94 E-value=3e-28 Score=248.33 Aligned_cols=171 Identities=17% Similarity=0.168 Sum_probs=131.2
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee---
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW--- 82 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~--- 82 (712)
++|++.|+++.|+ ..++++++++++.|+ +++|+||||||||||||+|+|+. +|++|++...+. +.
T Consensus 3 ~~l~~~~l~~~y~~~~~l~~vsl~i~~Ge------~~~iiG~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~ 72 (224)
T 2pcj_A 3 EILRAENIKKVIRGYEILKGISLSVKKGE------FVSIIGASGSGKSTLLYILGLLD----APTEGKVFLEGKEVDYTN 72 (224)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTC------EEEEEECTTSCHHHHHHHHTTSS----CCSEEEEEETTEECCSSC
T ss_pred cEEEEEeEEEEECCEeeEeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHhcCC----CCCceEEEECCEECCCCC
Confidence 4699999999995 457999999999999 99999999999999999999999 899998543221 10
Q ss_pred ------ec-cccCC-------Cccchhccc-------c------------------CCCc--ccccchhhHHHHHHHHHH
Q 005138 83 ------MA-RCAGI-------EPCTLIMDL-------E------------------GTDG--RERGEDDTAFEKQSALFA 121 (712)
Q Consensus 83 ------~~-~~~~~-------~~~~~v~d~-------~------------------g~~~--~~r~~~~~~ferQrv~~A 121 (712)
+. ..+++ .+...+.+. . |+.. .......+..||||++||
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~la 152 (224)
T 2pcj_A 73 EKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIA 152 (224)
T ss_dssp HHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence 00 11111 111111111 1 1111 011123345599999999
Q ss_pred HHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecC
Q 005138 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVP 197 (712)
Q Consensus 122 ~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~ 197 (712)
+|++ ++||+||||++||+.. ...+++.+.++.++ |+|||+||||++.+ ..|++++++.+ |+++..|+
T Consensus 153 ral~~~p~lllLDEPt~~LD~~~------~~~~~~~l~~l~~~-g~tvi~vtHd~~~~-~~~d~v~~l~~-G~i~~~g~ 222 (224)
T 2pcj_A 153 RALANEPILLFADEPTGNLDSAN------TKRVMDIFLKINEG-GTSIVMVTHERELA-ELTHRTLEMKD-GKVVGEIT 222 (224)
T ss_dssp HHTTTCCSEEEEESTTTTCCHHH------HHHHHHHHHHHHHT-TCEEEEECSCHHHH-TTSSEEEEEET-TEEEEEEE
T ss_pred HHHHcCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHHC-CCEEEEEcCCHHHH-HhCCEEEEEEC-CEEEEEee
Confidence 9999 9999999999999998 99999999999766 99999999999877 67999999988 99998875
No 17
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.94 E-value=2.8e-28 Score=264.30 Aligned_cols=180 Identities=12% Similarity=0.134 Sum_probs=139.6
Q ss_pred ccEEEEeeeeee-cc-ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCe----
Q 005138 8 CSTQLIDGDGTF-NV-SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGI---- 81 (712)
Q Consensus 8 ~~I~l~~l~k~y-~~-~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi---- 81 (712)
++|++.|+++.| +. .+|++++++++.|+ +++|+||||||||||||+|+|+. +|++|++...+..
T Consensus 13 ~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge------~~~llGpnGsGKSTLLr~iaGl~----~p~~G~I~i~g~~i~~~ 82 (355)
T 1z47_A 13 MTIEFVGVEKIYPGGARSVRGVSFQIREGE------MVGLLGPSGSGKTTILRLIAGLE----RPTKGDVWIGGKRVTDL 82 (355)
T ss_dssp EEEEEEEEEECCTTSTTCEEEEEEEEETTC------EEEEECSTTSSHHHHHHHHHTSS----CCSEEEEEETTEECTTC
T ss_pred ceEEEEEEEEEEcCCCEEEeeeEEEECCCC------EEEEECCCCCcHHHHHHHHhCCC----CCCccEEEECCEECCcC
Confidence 479999999999 64 47999999999999 99999999999999999999999 8999985432211
Q ss_pred --------eeccccCCCccchhccc-------cCCCcc--------------------cccchhhHHHHHHHHHHHHHH-
Q 005138 82 --------WMARCAGIEPCTLIMDL-------EGTDGR--------------------ERGEDDTAFEKQSALFALAVS- 125 (712)
Q Consensus 82 --------~~~~~~~~~~~~~v~d~-------~g~~~~--------------------~r~~~~~~ferQrv~~A~Ala- 125 (712)
++.......+.+.+.+. .+.+.. ......+..||||++||+|++
T Consensus 83 ~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~ 162 (355)
T 1z47_A 83 PPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAP 162 (355)
T ss_dssp CGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred ChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 11111111121122111 111110 111233455999999999999
Q ss_pred --HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccccC
Q 005138 126 --DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (712)
Q Consensus 126 --~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~~ 203 (712)
++|||||||++||+.. +..+.+.++++.++.|+|+|+||||++++..+|+++++|.+ |+|+..|++.+++.
T Consensus 163 ~P~lLLLDEP~s~LD~~~------r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~-G~i~~~g~~~~l~~ 235 (355)
T 1z47_A 163 RPQVLLFDEPFAAIDTQI------RRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHE-GNVEQFGTPEEVYE 235 (355)
T ss_dssp CCSEEEEESTTCCSSHHH------HHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEET-TEEEEEECHHHHHH
T ss_pred CCCEEEEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEEC-CEEEEEcCHHHHHh
Confidence 9999999999999998 99999999998765689999999999999889999999998 99999999887764
Q ss_pred C
Q 005138 204 E 204 (712)
Q Consensus 204 ~ 204 (712)
.
T Consensus 236 ~ 236 (355)
T 1z47_A 236 K 236 (355)
T ss_dssp S
T ss_pred C
Confidence 3
No 18
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.94 E-value=3.3e-28 Score=250.62 Aligned_cols=178 Identities=15% Similarity=0.116 Sum_probs=135.6
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee----
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW---- 82 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~---- 82 (712)
++|++.|+++.|+ ..+|++++++++.|+ +++|+||||||||||||+|+|+. +|++|++...+...
T Consensus 5 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge------~~~l~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~ 74 (240)
T 1ji0_A 5 IVLEVQSLHVYYGAIHAIKGIDLKVPRGQ------IVTLIGANGAGKTTTLSAIAGLV----RAQKGKIIFNGQDITNKP 74 (240)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTC------EEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEETTEECTTCC
T ss_pred ceEEEEeEEEEECCeeEEeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCceEEECCEECCCCC
Confidence 3699999999995 357999999999999 99999999999999999999999 89999854322100
Q ss_pred ----eccccC-------CCccchhcccc------CCCcc---------------------cccchhhHHHHHHHHHHHHH
Q 005138 83 ----MARCAG-------IEPCTLIMDLE------GTDGR---------------------ERGEDDTAFEKQSALFALAV 124 (712)
Q Consensus 83 ----~~~~~~-------~~~~~~v~d~~------g~~~~---------------------~r~~~~~~ferQrv~~A~Al 124 (712)
....++ ..+...+.+.. +.... ......+..||||++||+|+
T Consensus 75 ~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL 154 (240)
T 1ji0_A 75 AHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRAL 154 (240)
T ss_dssp HHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHH
T ss_pred HHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHH
Confidence 000111 11111111110 00000 01112234499999999999
Q ss_pred H---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccc
Q 005138 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (712)
Q Consensus 125 a---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~ 201 (712)
+ ++|||||||++||+.. ...+++.+.++.+ .|+|+|+||||++.+...|++++++.+ |+++..|++.++
T Consensus 155 ~~~p~lllLDEPts~LD~~~------~~~l~~~l~~~~~-~g~tvi~vtHd~~~~~~~~d~v~~l~~-G~i~~~g~~~~~ 226 (240)
T 1ji0_A 155 MSRPKLLMMDEPSLGLAPIL------VSEVFEVIQKINQ-EGTTILLVEQNALGALKVAHYGYVLET-GQIVLEGKASEL 226 (240)
T ss_dssp TTCCSEEEEECTTTTCCHHH------HHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHCSEEEEEET-TEEEEEEEHHHH
T ss_pred HcCCCEEEEcCCcccCCHHH------HHHHHHHHHHHHH-CCCEEEEEecCHHHHHHhCCEEEEEEC-CEEEEEcCHHHH
Confidence 9 9999999999999998 9999999999876 499999999999888888999999988 999998887665
Q ss_pred cC
Q 005138 202 HM 203 (712)
Q Consensus 202 ~~ 203 (712)
+.
T Consensus 227 ~~ 228 (240)
T 1ji0_A 227 LD 228 (240)
T ss_dssp HT
T ss_pred hc
Confidence 43
No 19
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.94 E-value=4e-28 Score=250.10 Aligned_cols=176 Identities=13% Similarity=0.096 Sum_probs=134.7
Q ss_pred cEEEEeeeeeeccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee-----e
Q 005138 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW-----M 83 (712)
Q Consensus 9 ~I~l~~l~k~y~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~-----~ 83 (712)
||++.|+++.|+. .+++++++++. + +++|+||||||||||||+|+|+. +|++|++...+.-. .
T Consensus 1 ml~~~~l~~~y~~-~l~~isl~i~~-e------~~~liG~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~~~ 68 (240)
T 2onk_A 1 MFLKVRAEKRLGN-FRLNVDFEMGR-D------YCVLLGPTGAGKSVFLELIAGIV----KPDRGEVRLNGADITPLPPE 68 (240)
T ss_dssp CCEEEEEEEEETT-EEEEEEEEECS-S------EEEEECCTTSSHHHHHHHHHTSS----CCSEEEEEETTEECTTSCTT
T ss_pred CEEEEEEEEEeCC-EEeeeEEEECC-E------EEEEECCCCCCHHHHHHHHhCCC----CCCceEEEECCEECCcCchh
Confidence 4889999999965 59999999999 9 99999999999999999999999 89999864322100 0
Q ss_pred ccccCC-------Cccchhccc-----------------------cCCCc--ccccchhhHHHHHHHHHHHHHH---HHh
Q 005138 84 ARCAGI-------EPCTLIMDL-----------------------EGTDG--RERGEDDTAFEKQSALFALAVS---DIV 128 (712)
Q Consensus 84 ~~~~~~-------~~~~~v~d~-----------------------~g~~~--~~r~~~~~~ferQrv~~A~Ala---~iL 128 (712)
...+++ .+...+.+. .|+.. .......+..||||+++|+|++ ++|
T Consensus 69 ~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ll 148 (240)
T 2onk_A 69 RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLL 148 (240)
T ss_dssp TSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSB
T ss_pred hCcEEEEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 111121 111111111 11111 0111233455999999999999 999
Q ss_pred hhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccccC
Q 005138 129 LINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (712)
Q Consensus 129 lLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~~ 203 (712)
|+||||++||+.. ...+++.+.++.++.|+|||+||||++.+...|++++++.+ |+++..|++.+++.
T Consensus 149 lLDEPts~LD~~~------~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~-G~i~~~g~~~~~~~ 216 (240)
T 2onk_A 149 LLDEPLSAVDLKT------KGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLN-GRIVEKGKLKELFS 216 (240)
T ss_dssp EEESTTSSCCHHH------HHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEET-TEEEEEECHHHHHH
T ss_pred EEeCCcccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEECCHHHHHh
Confidence 9999999999998 99999999998654589999999999988888999999988 99999998766543
No 20
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.94 E-value=3.2e-28 Score=263.37 Aligned_cols=179 Identities=13% Similarity=0.126 Sum_probs=139.6
Q ss_pred cEEEEeeeeeeccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCe-------
Q 005138 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGI------- 81 (712)
Q Consensus 9 ~I~l~~l~k~y~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi------- 81 (712)
||++.|+++.|+..++++++++++.|+ +++|+||||||||||||+|+|+. +|++|++...+..
T Consensus 1 ml~~~~l~~~y~~~~l~~vsl~i~~Ge------~~~llGpnGsGKSTLLr~iaGl~----~p~~G~I~~~g~~i~~~~~~ 70 (348)
T 3d31_A 1 MIEIESLSRKWKNFSLDNLSLKVESGE------YFVILGPTGAGKTLFLELIAGFH----VPDSGRILLDGKDVTDLSPE 70 (348)
T ss_dssp CEEEEEEEEECSSCEEEEEEEEECTTC------EEEEECCCTHHHHHHHHHHHTSS----CCSEEEEEETTEECTTSCHH
T ss_pred CEEEEEEEEEECCEEEeeeEEEEcCCC------EEEEECCCCccHHHHHHHHHcCC----CCCCcEEEECCEECCCCchh
Confidence 489999999995338999999999999 99999999999999999999999 8999986432211
Q ss_pred -----eeccccCCCccchhcc----------------------ccCCCcc--cccchhhHHHHHHHHHHHHHH---HHhh
Q 005138 82 -----WMARCAGIEPCTLIMD----------------------LEGTDGR--ERGEDDTAFEKQSALFALAVS---DIVL 129 (712)
Q Consensus 82 -----~~~~~~~~~~~~~v~d----------------------~~g~~~~--~r~~~~~~ferQrv~~A~Ala---~iLl 129 (712)
++.+.....+.+.+.+ ..|+... ......+..||||++||+|++ ++||
T Consensus 71 ~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLL 150 (348)
T 3d31_A 71 KHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILL 150 (348)
T ss_dssp HHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEE
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 1111111111111111 1122111 112234556999999999999 9999
Q ss_pred hccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccccCC
Q 005138 130 INMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHME 204 (712)
Q Consensus 130 LDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~~~ 204 (712)
|||||++||+.. +..+.+.++++.++.|+|+|+||||++++..+|+++++|.+ |+++..|++.+++..
T Consensus 151 LDEP~s~LD~~~------~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~-G~i~~~g~~~~~~~~ 218 (348)
T 3d31_A 151 LDEPLSALDPRT------QENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMD-GKLIQVGKPEEIFEK 218 (348)
T ss_dssp EESSSTTSCHHH------HHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESS-SCEEEEECHHHHHSS
T ss_pred EECccccCCHHH------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEECCHHHHHhC
Confidence 999999999998 99999999999765699999999999999888999999988 999999998887754
No 21
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.94 E-value=4.7e-28 Score=252.67 Aligned_cols=177 Identities=18% Similarity=0.189 Sum_probs=137.1
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee----
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW---- 82 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~---- 82 (712)
+|++.|+++.|+ ..+|+++++++..|+ +++|+||||||||||||+|+|+. +|++|++...+. +.
T Consensus 6 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge------~~~liG~nGsGKSTLlk~l~Gl~----~p~~G~i~~~g~~~~~~~~ 75 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHEVLKGVSLQARAGD------VISIIGSSGSGKSTFLRCINFLE----KPSEGAIIVNGQNINLVRD 75 (262)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTC------EEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEETTEECCEEEC
T ss_pred eEEEeeEEEEECCEEEEEeeEEEEcCCC------EEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEECCEEcccccc
Confidence 699999999995 357999999999999 99999999999999999999999 899998643221 10
Q ss_pred ---------------eccccCC-------Cccchhcc--------c------------------cCCCcc---cccchhh
Q 005138 83 ---------------MARCAGI-------EPCTLIMD--------L------------------EGTDGR---ERGEDDT 111 (712)
Q Consensus 83 ---------------~~~~~~~-------~~~~~v~d--------~------------------~g~~~~---~r~~~~~ 111 (712)
+...+++ .+...+.+ . .|+... ......+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LS 155 (262)
T 1b0u_A 76 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLS 155 (262)
T ss_dssp TTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSC
T ss_pred ccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCC
Confidence 0011111 11111111 1 122111 1122344
Q ss_pred HHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceec
Q 005138 112 AFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (712)
Q Consensus 112 ~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~ 188 (712)
..||||++||+|++ ++|||||||++||+.. ...+.+.+.++.++ |+|||+||||++.+...|++++++.+
T Consensus 156 gGq~qRv~lAraL~~~p~lllLDEPts~LD~~~------~~~~~~~l~~l~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~ 228 (262)
T 1b0u_A 156 GGQQQRVSIARALAMEPDVLLFDEPTSALDPEL------VGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQ 228 (262)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHH------HHHHHHHHHHHHHT-TCCEEEECSCHHHHHHHCSEEEEEET
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 56999999999999 9999999999999998 99999999999766 99999999999998888999999988
Q ss_pred CCeEEEecCcccccC
Q 005138 189 IQKIWDSVPKPQAHM 203 (712)
Q Consensus 189 ~G~I~~~g~~~e~~~ 203 (712)
|+++..|++.+++.
T Consensus 229 -G~i~~~g~~~~~~~ 242 (262)
T 1b0u_A 229 -GKIEEEGDPEQVFG 242 (262)
T ss_dssp -TEEEEEECHHHHHH
T ss_pred -CEEEEeCCHHHHHh
Confidence 99999998766543
No 22
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.94 E-value=1.1e-27 Score=252.17 Aligned_cols=188 Identities=16% Similarity=0.128 Sum_probs=141.9
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-ee---
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IW--- 82 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~--- 82 (712)
++|++.|+++.|+ ..+|+++++++..|+ +++|+||||||||||||+|+|+. +|++|++...+. +.
T Consensus 20 ~~l~~~~l~~~y~~~~vL~~isl~i~~Ge------~~~liG~NGsGKSTLlk~l~Gl~----~p~~G~I~~~g~~~~~~~ 89 (279)
T 2ihy_A 20 MLIQLDQIGRMKQGKTILKKISWQIAKGD------KWILYGLNGAGKTTLLNILNAYE----PATSGTVNLFGKMPGKVG 89 (279)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTC------EEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEETTBCCC---
T ss_pred ceEEEEeEEEEECCEEEEEeeeEEEcCCC------EEEEECCCCCcHHHHHHHHhCCC----CCCCeEEEECCEEccccc
Confidence 4799999999995 457999999999999 99999999999999999999999 899998643321 10
Q ss_pred -----eccccCC---------Cccchhcccc-----------------------------CCCc--ccccchhhHHHHHH
Q 005138 83 -----MARCAGI---------EPCTLIMDLE-----------------------------GTDG--RERGEDDTAFEKQS 117 (712)
Q Consensus 83 -----~~~~~~~---------~~~~~v~d~~-----------------------------g~~~--~~r~~~~~~ferQr 117 (712)
+...+++ .....+.+.. |+.. .......+..||||
T Consensus 90 ~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqR 169 (279)
T 2ihy_A 90 YSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQR 169 (279)
T ss_dssp CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHH
T ss_pred CCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHH
Confidence 0011111 0001221211 1100 00111223449999
Q ss_pred HHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceE--EEEecCCCCcccccccccceecCCeE
Q 005138 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTL--MFVIRDKTRTPLENLEPVLREDIQKI 192 (712)
Q Consensus 118 v~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~ti--L~VtHDl~~~~~~~~~~~ll~~~G~I 192 (712)
++||+|++ ++|||||||++||+.. ...+++.+.++.++ |+|| |+||||++.+...|++++++.+ |++
T Consensus 170 v~lAraL~~~p~lLlLDEPts~LD~~~------~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~~l~~-G~i 241 (279)
T 2ihy_A 170 VMIARALMGQPQVLILDEPAAGLDFIA------RESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKILLLKD-GQS 241 (279)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTCCHHH------HHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEEEEEET-TEE
T ss_pred HHHHHHHhCCCCEEEEeCCccccCHHH------HHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEEEEEEC-CEE
Confidence 99999999 9999999999999998 99999999998765 8999 9999999998888999999988 999
Q ss_pred EEecCcccccCCccchhhhcc
Q 005138 193 WDSVPKPQAHMETPLSEFFNV 213 (712)
Q Consensus 193 ~~~g~~~e~~~~~~l~d~f~~ 213 (712)
+..|++.+++....+.++|..
T Consensus 242 ~~~g~~~~~~~~~~~~~~~~~ 262 (279)
T 2ihy_A 242 IQQGAVEDILTSENMSRFFQK 262 (279)
T ss_dssp EEEEEHHHHCSHHHHHHHHTS
T ss_pred EEECCHHHHhccHHHHHHhCC
Confidence 999988776654445555543
No 23
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.94 E-value=5.2e-27 Score=245.27 Aligned_cols=177 Identities=17% Similarity=0.153 Sum_probs=137.0
Q ss_pred cEEEEeeeeeec--c----ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-e
Q 005138 9 STQLIDGDGTFN--V----SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-I 81 (712)
Q Consensus 9 ~I~l~~l~k~y~--~----~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i 81 (712)
||++.|+++.|+ . .+|+++++++..|+ +++|+||||||||||||+|+|+. +|++|++...+. +
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge------~~~liG~nGsGKSTLl~~i~Gl~----~p~~G~I~~~g~~~ 71 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGE------CLLVAGNTGSGKSTLLQIVAGLI----EPTSGDVLYDGERK 71 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTC------EEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEETTEEC
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCC------EEEEECCCCCcHHHHHHHHhCCC----CCCCcEEEECCEEC
Confidence 599999999996 2 47999999999999 99999999999999999999999 899998643321 0
Q ss_pred ---eeccccCC--C------ccchh------------------------ccccCCC--cc--cccchhhHHHHHHHHHHH
Q 005138 82 ---WMARCAGI--E------PCTLI------------------------MDLEGTD--GR--ERGEDDTAFEKQSALFAL 122 (712)
Q Consensus 82 ---~~~~~~~~--~------~~~~v------------------------~d~~g~~--~~--~r~~~~~~ferQrv~~A~ 122 (712)
.+.+.+++ . ....+ ++..|+. .. ......+..||||++||+
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAr 151 (266)
T 2yz2_A 72 KGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIAS 151 (266)
T ss_dssp CHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHH
T ss_pred chHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHH
Confidence 00011110 0 00011 1111222 11 112234566999999999
Q ss_pred HHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcc
Q 005138 123 AVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (712)
Q Consensus 123 Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~ 199 (712)
|++ ++|||||||++||+.. ...+++.+.++.++ |+|||+||||++.+...|++++++.+ |+++..|++.
T Consensus 152 aL~~~p~lllLDEPts~LD~~~------~~~l~~~l~~l~~~-g~tii~vtHd~~~~~~~~d~v~~l~~-G~i~~~g~~~ 223 (266)
T 2yz2_A 152 VIVHEPDILILDEPLVGLDREG------KTDLLRIVEKWKTL-GKTVILISHDIETVINHVDRVVVLEK-GKKVFDGTRM 223 (266)
T ss_dssp HHTTCCSEEEEESTTTTCCHHH------HHHHHHHHHHHHHT-TCEEEEECSCCTTTGGGCSEEEEEET-TEEEEEEEHH
T ss_pred HHHcCCCEEEEcCccccCCHHH------HHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 999 9999999999999998 99999999999766 99999999999999888999999988 9999998877
Q ss_pred cccC
Q 005138 200 QAHM 203 (712)
Q Consensus 200 e~~~ 203 (712)
+++.
T Consensus 224 ~~~~ 227 (266)
T 2yz2_A 224 EFLE 227 (266)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6653
No 24
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.93 E-value=6.4e-27 Score=240.56 Aligned_cols=173 Identities=18% Similarity=0.189 Sum_probs=132.1
Q ss_pred cEEEEeeeeeec---cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCe-eec
Q 005138 9 STQLIDGDGTFN---VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGI-WMA 84 (712)
Q Consensus 9 ~I~l~~l~k~y~---~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi-~~~ 84 (712)
+|++.|+++.|+ ..+|+++++++..|+ +++|+||||||||||||+|+|+. +|++|++...+.+ ++.
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~I~~~g~i~~v~ 72 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGA------LVAVVGQVGCGKSSLLSALLAEM----DKVEGHVAIKGSVAYVP 72 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTC------EEEEECSTTSSHHHHHHHHTTCS----EEEEEEEEECSCEEEEC
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCC------EEEEECCCCCCHHHHHHHHhcCC----CCCCceEEECCEEEEEc
Confidence 699999999995 357999999999999 99999999999999999999999 8999986554332 111
Q ss_pred cccCCCccchhccc------------------c------CC-C------cccccchhhHHHHHHHHHHHHHH---HHhhh
Q 005138 85 RCAGIEPCTLIMDL------------------E------GT-D------GRERGEDDTAFEKQSALFALAVS---DIVLI 130 (712)
Q Consensus 85 ~~~~~~~~~~v~d~------------------~------g~-~------~~~r~~~~~~ferQrv~~A~Ala---~iLlL 130 (712)
...... ...+.+. . +. + ...+....+..||||+++|+|++ ++|||
T Consensus 73 Q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllL 151 (237)
T 2cbz_A 73 QQAWIQ-NDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLF 151 (237)
T ss_dssp SSCCCC-SEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred CCCcCC-CcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 111111 0011000 0 00 0 01122345677999999999999 99999
Q ss_pred ccccCCCchhhhhChhhHHHHHHHHH---HhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCccccc
Q 005138 131 NMWCHDIGREQAANKPLLKTVFQVMM---RLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (712)
Q Consensus 131 DEP~~~LD~~~~a~~~l~~~v~e~l~---~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~ 202 (712)
||||++||+.. ...+++.+. ++ . .|+|+|+||||++.+. .|++++++.+ |+++..|++++++
T Consensus 152 DEPts~LD~~~------~~~i~~~l~~~~~~-~-~~~tviivtH~~~~~~-~~d~v~~l~~-G~i~~~g~~~~~~ 216 (237)
T 2cbz_A 152 DDPLSAVDAHV------GKHIFENVIGPKGM-L-KNKTRILVTHSMSYLP-QVDVIIVMSG-GKISEMGSYQELL 216 (237)
T ss_dssp ESTTTTSCHHH------HHHHHHHTTSTTST-T-TTSEEEEECSCSTTGG-GSSEEEEEET-TEEEEEECHHHHH
T ss_pred eCcccccCHHH------HHHHHHHHHHHHhh-c-CCCEEEEEecChHHHH-hCCEEEEEeC-CEEEEeCCHHHHh
Confidence 99999999998 888988885 33 2 3899999999998875 5999999988 9999999876654
No 25
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.93 E-value=1.4e-26 Score=239.86 Aligned_cols=173 Identities=14% Similarity=0.062 Sum_probs=129.4
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhcc--ccCccCCCCCeeeccCCee---
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGT--NFREMDAFKGRSQTTKGIW--- 82 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl--~f~~m~p~sG~~~~t~gi~--- 82 (712)
+|++.|+++.|+ ..+|+++++++..|+ +++|+||||||||||||+|+|+ . +|++|++...+.-.
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge------~~~l~G~nGsGKSTLlk~l~Gl~~~----~p~~G~I~~~g~~~~~~ 72 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGE------VHALMGPNGAGKSTLGKILAGDPEY----TVERGEILLDGENILEL 72 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTC------EEEEECSTTSSHHHHHHHHHTCTTC----EEEEEEEEETTEECTTS
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCC------EEEEECCCCCCHHHHHHHHhCCCCC----CCCceEEEECCEECCCC
Confidence 699999999995 457999999999999 9999999999999999999998 5 68889854322100
Q ss_pred -----eccccCC-------Cccchh----------------------------ccccCCC-c--ccccch-hhHHHHHHH
Q 005138 83 -----MARCAGI-------EPCTLI----------------------------MDLEGTD-G--RERGED-DTAFEKQSA 118 (712)
Q Consensus 83 -----~~~~~~~-------~~~~~v----------------------------~d~~g~~-~--~~r~~~-~~~ferQrv 118 (712)
....+++ .+...+ ++..|+. . ...... .+..||||+
T Consensus 73 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv 152 (250)
T 2d2e_A 73 SPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRN 152 (250)
T ss_dssp CHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHH
T ss_pred CHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHH
Confidence 0000111 010000 0011331 1 111123 567799999
Q ss_pred HHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccc-cccccceecCCeEEE
Q 005138 119 LFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE-NLEPVLREDIQKIWD 194 (712)
Q Consensus 119 ~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~-~~~~~ll~~~G~I~~ 194 (712)
+||+|++ ++|||||||++||+.. ...+++.+.++.+ .|+|||+||||++.+... |++++++.+ |+++.
T Consensus 153 ~iAraL~~~p~lllLDEPts~LD~~~------~~~l~~~l~~l~~-~g~tvi~vtHd~~~~~~~~~d~v~~l~~-G~i~~ 224 (250)
T 2d2e_A 153 EILQLLVLEPTYAVLDETDSGLDIDA------LKVVARGVNAMRG-PNFGALVITHYQRILNYIQPDKVHVMMD-GRVVA 224 (250)
T ss_dssp HHHHHHHHCCSEEEEECGGGTTCHHH------HHHHHHHHHHHCS-TTCEEEEECSSSGGGGTSCCSEEEEEET-TEEEE
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHH------HHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhcCCEEEEEEC-CEEEE
Confidence 9999999 9999999999999998 9999999999865 499999999999988877 589998988 99998
Q ss_pred ecCcc
Q 005138 195 SVPKP 199 (712)
Q Consensus 195 ~g~~~ 199 (712)
.|++.
T Consensus 225 ~g~~~ 229 (250)
T 2d2e_A 225 TGGPE 229 (250)
T ss_dssp EESHH
T ss_pred EeCHH
Confidence 88754
No 26
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.93 E-value=9.2e-27 Score=241.19 Aligned_cols=173 Identities=17% Similarity=0.179 Sum_probs=133.4
Q ss_pred cEEEEeeeeeeccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCe-------
Q 005138 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGI------- 81 (712)
Q Consensus 9 ~I~l~~l~k~y~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi------- 81 (712)
+|++.|+++. .+|+++++++..|+ +++|+||||||||||||+|+|+. +|+ |++...+.-
T Consensus 4 ~l~~~~l~~~---~vl~~vsl~i~~Ge------~~~liG~NGsGKSTLlk~l~Gl~----~p~-G~i~~~g~~~~~~~~~ 69 (249)
T 2qi9_C 4 VMQLQDVAES---TRLGPLSGEVRAGE------ILHLVGPNGAGKSTLLARMAGMT----SGK-GSIQFAGQPLEAWSAT 69 (249)
T ss_dssp EEEEEEEEET---TTEEEEEEEEETTC------EEEEECCTTSSHHHHHHHHTTSS----CCE-EEEEETTEEGGGSCHH
T ss_pred EEEEEceEEE---EEEeeeEEEEcCCC------EEEEECCCCCcHHHHHHHHhCCC----CCC-eEEEECCEECCcCCHH
Confidence 6999999987 47999999999999 99999999999999999999999 899 985432210
Q ss_pred -------eeccccCCCccchhccc--------------------cCCCc--ccccchhhHHHHHHHHHHHHHH---H---
Q 005138 82 -------WMARCAGIEPCTLIMDL--------------------EGTDG--RERGEDDTAFEKQSALFALAVS---D--- 126 (712)
Q Consensus 82 -------~~~~~~~~~~~~~v~d~--------------------~g~~~--~~r~~~~~~ferQrv~~A~Ala---~--- 126 (712)
++.......+...+.+. .|+.. .......+..||||++||+|++ +
T Consensus 70 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~ 149 (249)
T 2qi9_C 70 KLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQAN 149 (249)
T ss_dssp HHHHHEEEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTC
T ss_pred HHhceEEEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCC
Confidence 11111111111111111 11111 0111233455999999999999 8
Q ss_pred ----HhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCccccc
Q 005138 127 ----IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (712)
Q Consensus 127 ----iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~ 202 (712)
+|||||||++||+.. ...+.+.+.++.++ |+|+|+||||++.+...|++++++.+ |+++..|++.+++
T Consensus 150 ~~~~lllLDEPts~LD~~~------~~~l~~~l~~l~~~-g~tviivtHd~~~~~~~~d~v~~l~~-G~i~~~g~~~~~~ 221 (249)
T 2qi9_C 150 PAGQLLLLDEPMNSLDVAQ------QSALDKILSALSQQ-GLAIVMSSHDLNHTLRHAHRAWLLKG-GKMLASGRREEVL 221 (249)
T ss_dssp TTCCEEEESSTTTTCCHHH------HHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEET-TEEEEEEEHHHHS
T ss_pred CCCeEEEEECCcccCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEEC-CEEEEeCCHHHHh
Confidence 999999999999999 99999999999765 99999999999988888999999988 9999999877765
Q ss_pred C
Q 005138 203 M 203 (712)
Q Consensus 203 ~ 203 (712)
.
T Consensus 222 ~ 222 (249)
T 2qi9_C 222 T 222 (249)
T ss_dssp C
T ss_pred c
Confidence 4
No 27
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.93 E-value=2.2e-26 Score=241.21 Aligned_cols=176 Identities=13% Similarity=0.129 Sum_probs=134.3
Q ss_pred ccEEEEeeeeeec----cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-e-
Q 005138 8 CSTQLIDGDGTFN----VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-I- 81 (712)
Q Consensus 8 ~~I~l~~l~k~y~----~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i- 81 (712)
.+|++.|+++.|+ ..+|+++++++..|+ +++|+||||||||||||+|+|+. +|++|++...+. +
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge------~~~i~G~nGsGKSTLlk~l~Gl~----~p~~G~I~~~g~~i~ 84 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGK------VTALVGPNGSGKSTVAALLQNLY----QPTGGKVLLDGEPLV 84 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTC------EEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEETTEEGG
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCC------EEEEECCCCCCHHHHHHHHhcCC----CCCCCEEEECCEEcc
Confidence 3699999999995 357999999999999 99999999999999999999999 899998543221 0
Q ss_pred -----eeccccC-------CCccchhcccc--C-----------------------------CCc--ccccchhhHHHHH
Q 005138 82 -----WMARCAG-------IEPCTLIMDLE--G-----------------------------TDG--RERGEDDTAFEKQ 116 (712)
Q Consensus 82 -----~~~~~~~-------~~~~~~v~d~~--g-----------------------------~~~--~~r~~~~~~ferQ 116 (712)
.+...++ ..+. .+.+.. + +.. .......+..|||
T Consensus 85 ~~~~~~~~~~i~~v~Q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~Q 163 (271)
T 2ixe_A 85 QYDHHYLHTQVAAVGQEPLLFGR-SFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQ 163 (271)
T ss_dssp GBCHHHHHHHEEEECSSCCCCSS-BHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHH
T ss_pred cCCHHHHhccEEEEecCCccccc-cHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHH
Confidence 0001111 1111 111110 0 000 0112234556999
Q ss_pred HHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEE
Q 005138 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (712)
Q Consensus 117 rv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~ 193 (712)
|++||+|++ ++|||||||++||+.. ...+++.+.++.++.|+|||+||||++.+.. |++++++.+ |+++
T Consensus 164 Rv~lAraL~~~p~lllLDEPts~LD~~~------~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l~~-G~i~ 235 (271)
T 2ixe_A 164 AVALARALIRKPRLLILDNATSALDAGN------QLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFLKE-GSVC 235 (271)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTCCHHH------HHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEEET-TEEE
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCHHH------HHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEEEC-CEEE
Confidence 999999999 9999999999999998 9999999999875558999999999987765 999999988 9999
Q ss_pred EecCccccc
Q 005138 194 DSVPKPQAH 202 (712)
Q Consensus 194 ~~g~~~e~~ 202 (712)
..|++.+++
T Consensus 236 ~~g~~~~l~ 244 (271)
T 2ixe_A 236 EQGTHLQLM 244 (271)
T ss_dssp EEECHHHHH
T ss_pred EECCHHHHH
Confidence 998876654
No 28
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.93 E-value=1.3e-26 Score=236.96 Aligned_cols=175 Identities=13% Similarity=0.160 Sum_probs=132.1
Q ss_pred ccEEEEeeeeeec---cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCe-ee
Q 005138 8 CSTQLIDGDGTFN---VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGI-WM 83 (712)
Q Consensus 8 ~~I~l~~l~k~y~---~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi-~~ 83 (712)
.+|++.|+++.|+ ..+|+++++++..|+ +++|+||||||||||||+|+|+. +|++|++...+.+ ++
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~i~~v 74 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQ------LLAVAGSTGAGKTSLLMMIMGEL----EPSEGKIKHSGRISFC 74 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTC------EEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEECSCEEEE
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----cCCccEEEECCEEEEE
Confidence 4699999999994 357999999999999 99999999999999999999999 8999996554332 11
Q ss_pred ccccCCCccchhccc------------------cCCCc-------------ccccchhhHHHHHHHHHHHHHH---HHhh
Q 005138 84 ARCAGIEPCTLIMDL------------------EGTDG-------------RERGEDDTAFEKQSALFALAVS---DIVL 129 (712)
Q Consensus 84 ~~~~~~~~~~~v~d~------------------~g~~~-------------~~r~~~~~~ferQrv~~A~Ala---~iLl 129 (712)
.......+. .+.+. .++.. .......+..||||+++|+|++ ++||
T Consensus 75 ~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lll 153 (229)
T 2pze_A 75 SQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYL 153 (229)
T ss_dssp CSSCCCCSB-CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEE
T ss_pred ecCCcccCC-CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 111111111 11110 01100 0112345677999999999999 9999
Q ss_pred hccccCCCchhhhhChhhHHHHHHHH-HHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccccC
Q 005138 130 INMWCHDIGREQAANKPLLKTVFQVM-MRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHM 203 (712)
Q Consensus 130 LDEP~~~LD~~~~a~~~l~~~v~e~l-~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~~ 203 (712)
|||||++||+.. ...+++.+ .++. + |+|+|+||||++.+. .|++++++.+ |+++..|+++++..
T Consensus 154 LDEPts~LD~~~------~~~i~~~l~~~~~-~-~~tvi~vtH~~~~~~-~~d~v~~l~~-G~i~~~g~~~~~~~ 218 (229)
T 2pze_A 154 LDSPFGYLDVLT------EKEIFESCVCKLM-A-NKTRILVTSKMEHLK-KADKILILHE-GSSYFYGTFSELQN 218 (229)
T ss_dssp EESTTTTSCHHH------HHHHHHHCCCCCT-T-TSEEEEECCCHHHHH-HCSEEEEEET-TEEEEEECHHHHHT
T ss_pred EECcccCCCHHH------HHHHHHHHHHHhh-C-CCEEEEEcCChHHHH-hCCEEEEEEC-CEEEEECCHHHHHh
Confidence 999999999998 88888864 4443 3 899999999998775 4999999988 99999998776543
No 29
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.93 E-value=3.5e-26 Score=236.49 Aligned_cols=174 Identities=16% Similarity=0.188 Sum_probs=133.0
Q ss_pred cEEEEeeeeee--c-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-e---
Q 005138 9 STQLIDGDGTF--N-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-I--- 81 (712)
Q Consensus 9 ~I~l~~l~k~y--~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i--- 81 (712)
.|++.|+++.| + ..+|+++++++..|+ +++|+||||||||||||+|+|+. +|++|++...+. +
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~I~i~g~~~~~~ 76 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGE------VIGIVGRSGSGKSTLTKLIQRFY----IPENGQVLIDGHDLALA 76 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTC------EEEEECSTTSSHHHHHHHHTTSS----CCSEEEEEETTEETTTS
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEECCEEhhhC
Confidence 58999999999 3 347999999999999 99999999999999999999999 899998543221 0
Q ss_pred ---eeccccC-------CCccchhccccCCC----cc----------------------------cccchhhHHHHHHHH
Q 005138 82 ---WMARCAG-------IEPCTLIMDLEGTD----GR----------------------------ERGEDDTAFEKQSAL 119 (712)
Q Consensus 82 ---~~~~~~~-------~~~~~~v~d~~g~~----~~----------------------------~r~~~~~~ferQrv~ 119 (712)
.+...++ ..+ ..+.+..... .. ......+..||||++
T Consensus 77 ~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~ 155 (247)
T 2ff7_A 77 DPNWLRRQVGVVLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIA 155 (247)
T ss_dssp CHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHH
T ss_pred CHHHHHhcEEEEeCCCcccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHH
Confidence 0001111 111 1121211110 00 011234566999999
Q ss_pred HHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEec
Q 005138 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 120 ~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g 196 (712)
||+|++ ++|||||||++||+.. ...+++.+.++. + |+|+|+||||++.+.. |++++++.+ |+++..|
T Consensus 156 iAraL~~~p~lllLDEPts~LD~~~------~~~i~~~l~~~~-~-g~tviivtH~~~~~~~-~d~v~~l~~-G~i~~~g 225 (247)
T 2ff7_A 156 IARALVNNPKILIFDEATSALDYES------EHVIMRNMHKIC-K-GRTVIIIAHRLSTVKN-ADRIIVMEK-GKIVEQG 225 (247)
T ss_dssp HHHHHTTCCSEEEECCCCSCCCHHH------HHHHHHHHHHHH-T-TSEEEEECSSGGGGTT-SSEEEEEET-TEEEEEE
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHH------HHHHHHHHHHHc-C-CCEEEEEeCCHHHHHh-CCEEEEEEC-CEEEEEC
Confidence 999999 9999999999999998 999999999984 4 8999999999988764 999999988 9999999
Q ss_pred CcccccC
Q 005138 197 PKPQAHM 203 (712)
Q Consensus 197 ~~~e~~~ 203 (712)
++.+++.
T Consensus 226 ~~~~l~~ 232 (247)
T 2ff7_A 226 KHKELLS 232 (247)
T ss_dssp CHHHHHT
T ss_pred CHHHHHh
Confidence 8766543
No 30
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.93 E-value=5.6e-26 Score=237.57 Aligned_cols=178 Identities=16% Similarity=0.070 Sum_probs=133.4
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC------
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------ 80 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g------ 80 (712)
++|++.|+++.|+ ..+|+++++++..|+ +++|+||||||||||||+|+|+.. .+|++|++...+.
T Consensus 19 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge------~~~l~G~NGsGKSTLlk~l~Gl~~--~~p~~G~I~~~g~~i~~~~ 90 (267)
T 2zu0_C 19 HMLSIKDLHVSVEDKAILRGLSLDVHPGE------VHAIMGPNGSGKSTLSATLAGRED--YEVTGGTVEFKGKDLLALS 90 (267)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEEECTTC------EEEEECCTTSSHHHHHHHHHTCTT--CEEEEEEEEETTEEGGGSC
T ss_pred ceEEEEeEEEEECCEEEEEeeEEEEcCCC------EEEEECCCCCCHHHHHHHHhCCCC--CCCCCeEEEECCEECCcCC
Confidence 4799999999995 457999999999999 999999999999999999999830 0578898533211
Q ss_pred --------e-eeccccCCCccc-------h-------------------------hccccCCCc---ccccc-hhhHHHH
Q 005138 81 --------I-WMARCAGIEPCT-------L-------------------------IMDLEGTDG---RERGE-DDTAFEK 115 (712)
Q Consensus 81 --------i-~~~~~~~~~~~~-------~-------------------------v~d~~g~~~---~~r~~-~~~~fer 115 (712)
+ ++.......+.. + +++..|+.. ..... ..+..||
T Consensus 91 ~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~ 170 (267)
T 2zu0_C 91 PEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEK 170 (267)
T ss_dssp HHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHH
T ss_pred HHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHH
Confidence 1 111110000000 0 011123321 11112 3567799
Q ss_pred HHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccc-cccccceecCCe
Q 005138 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE-NLEPVLREDIQK 191 (712)
Q Consensus 116 Qrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~-~~~~~ll~~~G~ 191 (712)
||++||+|++ ++|||||||++||+.. ...+++.+.++.++ |+|||+||||++.+... |++++++.+ |+
T Consensus 171 QRv~iAraL~~~p~lLlLDEPts~LD~~~------~~~l~~~l~~l~~~-g~tviivtHd~~~~~~~~~d~v~~l~~-G~ 242 (267)
T 2zu0_C 171 KRNDILQMAVLEPELCILDESDSGLDIDA------LKVVADGVNSLRDG-KRSFIIVTHYQRILDYIKPDYVHVLYQ-GR 242 (267)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHH------HHHHHHHHHTTCCS-SCEEEEECSSGGGGGTSCCSEEEEEET-TE
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHhc-CCEEEEEeeCHHHHHhhcCCEEEEEEC-CE
Confidence 9999999999 9999999999999998 99999999998654 99999999999988775 899999988 99
Q ss_pred EEEecCcccc
Q 005138 192 IWDSVPKPQA 201 (712)
Q Consensus 192 I~~~g~~~e~ 201 (712)
++..|+++++
T Consensus 243 i~~~g~~~~~ 252 (267)
T 2zu0_C 243 IVKSGDFTLV 252 (267)
T ss_dssp EEEEECTTHH
T ss_pred EEEEcCHHHH
Confidence 9999887553
No 31
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.92 E-value=5.1e-26 Score=234.59 Aligned_cols=173 Identities=16% Similarity=0.106 Sum_probs=131.9
Q ss_pred cEEEEeeeeee-c-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-e----
Q 005138 9 STQLIDGDGTF-N-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-I---- 81 (712)
Q Consensus 9 ~I~l~~l~k~y-~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i---- 81 (712)
||++.|+++.| + ..+|+++++++..|+ +++|+||||||||||||+|+|+. +|++|++...+. +
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~ 70 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNS------IIAFAGPSGGGKSTIFSLLERFY----QPTAGEITIDGQPIDNIS 70 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTE------EEEEECCTTSSHHHHHHHHTTSS----CCSBSCEEETTEESTTTS
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCC------EEEEECCCCCCHHHHHHHHhcCC----CCCCcEEEECCEEhhhCC
Confidence 48999999999 4 357999999999999 99999999999999999999999 899998543221 0
Q ss_pred --eeccccCC-------Cccchhcccc--------------------CCCcc-------------cccchhhHHHHHHHH
Q 005138 82 --WMARCAGI-------EPCTLIMDLE--------------------GTDGR-------------ERGEDDTAFEKQSAL 119 (712)
Q Consensus 82 --~~~~~~~~-------~~~~~v~d~~--------------------g~~~~-------------~r~~~~~~ferQrv~ 119 (712)
.+...+++ .+ ..+.+.. |+... ......+..||||++
T Consensus 71 ~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~ 149 (243)
T 1mv5_A 71 LENWRSQIGFVSQDSAIMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLA 149 (243)
T ss_dssp CSCCTTTCCEECCSSCCCC-EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHH
T ss_pred HHHHHhhEEEEcCCCcccc-ccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHH
Confidence 01111111 11 0111111 11100 012245667999999
Q ss_pred HHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEec
Q 005138 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 120 ~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g 196 (712)
+|+|++ ++|||||||++||+.. ...+++.+.++. + |+|+|+||||++.+. .|++++++.+ |+++..|
T Consensus 150 lAral~~~p~lllLDEPts~LD~~~------~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~-~~d~v~~l~~-G~i~~~g 219 (243)
T 1mv5_A 150 IARAFLRNPKILMLDEATASLDSES------ESMVQKALDSLM-K-GRTTLVIAHRLSTIV-DADKIYFIEK-GQITGSG 219 (243)
T ss_dssp HHHHHHHCCSEEEEECCSCSSCSSS------CCHHHHHHHHHH-T-TSEEEEECCSHHHHH-HCSEEEEEET-TEECCCS
T ss_pred HHHHHhcCCCEEEEECCcccCCHHH------HHHHHHHHHHhc-C-CCEEEEEeCChHHHH-hCCEEEEEEC-CEEEEeC
Confidence 999999 9999999999999998 899999999986 4 899999999998775 4999999988 9999888
Q ss_pred Cccccc
Q 005138 197 PKPQAH 202 (712)
Q Consensus 197 ~~~e~~ 202 (712)
++.+++
T Consensus 220 ~~~~~~ 225 (243)
T 1mv5_A 220 KHNELV 225 (243)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 766544
No 32
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.92 E-value=1.4e-25 Score=238.69 Aligned_cols=175 Identities=17% Similarity=0.184 Sum_probs=134.4
Q ss_pred cEEEEeeeeeec--cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-e----
Q 005138 9 STQLIDGDGTFN--VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-I---- 81 (712)
Q Consensus 9 ~I~l~~l~k~y~--~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i---- 81 (712)
.|++.|+++.|. ..+|++++|++..|+ +++|+||||||||||+++|+|+. +|++|++...+. +
T Consensus 53 ~i~~~~vs~~y~~~~~vL~~isl~i~~Ge------~vaivG~sGsGKSTLl~ll~gl~----~p~~G~I~i~G~~i~~~~ 122 (306)
T 3nh6_A 53 RIEFENVHFSYADGRETLQDVSFTVMPGQ------TLALVGPSGAGKSTILRLLFRFY----DISSGCIRIDGQDISQVT 122 (306)
T ss_dssp CEEEEEEEEESSTTCEEEEEEEEEECTTC------EEEEESSSCHHHHHHHHHHTTSS----CCSEEEEEETTEETTSBC
T ss_pred eEEEEEEEEEcCCCCceeeeeeEEEcCCC------EEEEECCCCchHHHHHHHHHcCC----CCCCcEEEECCEEcccCC
Confidence 599999999994 457999999999999 99999999999999999999999 899998543221 0
Q ss_pred --eeccccCC---Ccc---chhcccc--C----------------------------CC--cccccchhhHHHHHHHHHH
Q 005138 82 --WMARCAGI---EPC---TLIMDLE--G----------------------------TD--GRERGEDDTAFEKQSALFA 121 (712)
Q Consensus 82 --~~~~~~~~---~~~---~~v~d~~--g----------------------------~~--~~~r~~~~~~ferQrv~~A 121 (712)
.++..+++ .+. ..+.++. | ++ -.+++...+..||||++||
T Consensus 123 ~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiA 202 (306)
T 3nh6_A 123 QASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIA 202 (306)
T ss_dssp HHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHH
T ss_pred HHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHH
Confidence 00111111 000 0111110 0 00 0112233466799999999
Q ss_pred HHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCc
Q 005138 122 LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPK 198 (712)
Q Consensus 122 ~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~ 198 (712)
+|++ ++|||||||++||+.. ...+++.+.++.+ +.|+|+||||++.+.. ||++++|.+ |+|+..|++
T Consensus 203 RAL~~~p~iLlLDEPts~LD~~~------~~~i~~~l~~l~~--~~Tvi~itH~l~~~~~-aD~i~vl~~-G~iv~~G~~ 272 (306)
T 3nh6_A 203 RTILKAPGIILLDEATSALDTSN------ERAIQASLAKVCA--NRTTIVVAHRLSTVVN-ADQILVIKD-GCIVERGRH 272 (306)
T ss_dssp HHHHHCCSEEEEECCSSCCCHHH------HHHHHHHHHHHHT--TSEEEEECCSHHHHHT-CSEEEEEET-TEEEEEECH
T ss_pred HHHHhCCCEEEEECCcccCCHHH------HHHHHHHHHHHcC--CCEEEEEEcChHHHHc-CCEEEEEEC-CEEEEECCH
Confidence 9999 9999999999999998 9999999999864 6899999999998876 999999998 999999998
Q ss_pred ccccC
Q 005138 199 PQAHM 203 (712)
Q Consensus 199 ~e~~~ 203 (712)
.+++.
T Consensus 273 ~el~~ 277 (306)
T 3nh6_A 273 EALLS 277 (306)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77654
No 33
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.92 E-value=3.8e-25 Score=230.84 Aligned_cols=172 Identities=16% Similarity=0.145 Sum_probs=132.0
Q ss_pred cEEEEeeeeeec-----cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC----
Q 005138 9 STQLIDGDGTFN-----VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK---- 79 (712)
Q Consensus 9 ~I~l~~l~k~y~-----~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~---- 79 (712)
||++.|+++.|+ ..++++++++++ |+ +++|+||||||||||||+|+|+. |++|++...+
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge------~~~i~G~NGsGKSTLlk~l~Gl~-----p~~G~I~~~g~~~~ 68 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GE------KVIILGPNGSGKTTLLRAISGLL-----PYSGNIFINGMEVR 68 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SS------EEEEECCTTSSHHHHHHHHTTSS-----CCEEEEEETTEEGG
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CE------EEEEECCCCCCHHHHHHHHhCCC-----CCCcEEEECCEECc
Confidence 489999999995 347999999999 99 99999999999999999999987 7788854322
Q ss_pred ------Ce--eeccccCC-----Cccch--------------hccccCCC-c--ccccchhhHHHHHHHHHHHHHH---H
Q 005138 80 ------GI--WMARCAGI-----EPCTL--------------IMDLEGTD-G--RERGEDDTAFEKQSALFALAVS---D 126 (712)
Q Consensus 80 ------gi--~~~~~~~~-----~~~~~--------------v~d~~g~~-~--~~r~~~~~~ferQrv~~A~Ala---~ 126 (712)
.+ ++...... ++..+ +++..|+. . .......+..||||+++|+|++ +
T Consensus 69 ~~~~~~~i~~~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 148 (263)
T 2pjz_A 69 KIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPE 148 (263)
T ss_dssp GCSCCTTEEECCGGGSCTTSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCS
T ss_pred chHHhhheEEEeCCCCccCCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 11 11111111 00000 01112333 1 1223345667999999999999 9
Q ss_pred HhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccc-cccceecCCeEEEecCcccccC
Q 005138 127 IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENL-EPVLREDIQKIWDSVPKPQAHM 203 (712)
Q Consensus 127 iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~-~~~ll~~~G~I~~~g~~~e~~~ 203 (712)
+|||||||++||+.. ...+++.+.++.+ |+|+||||++.+...|+ +++++.+ |+++..|++++++.
T Consensus 149 lllLDEPts~LD~~~------~~~l~~~L~~~~~----tviivtHd~~~~~~~~d~~i~~l~~-G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 149 IVGLDEPFENVDAAR------RHVISRYIKEYGK----EGILVTHELDMLNLYKEYKAYFLVG-NRLQGPISVSELLE 215 (263)
T ss_dssp EEEEECTTTTCCHHH------HHHHHHHHHHSCS----EEEEEESCGGGGGGCTTSEEEEEET-TEEEEEEEHHHHHT
T ss_pred EEEEECCccccCHHH------HHHHHHHHHHhcC----cEEEEEcCHHHHHHhcCceEEEEEC-CEEEEecCHHHHHh
Confidence 999999999999998 9999999998742 99999999999888899 9999988 99999998877654
No 34
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.91 E-value=2.8e-25 Score=231.43 Aligned_cols=173 Identities=15% Similarity=0.108 Sum_probs=130.8
Q ss_pred ccEEEEeeeeeecc----ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee-
Q 005138 8 CSTQLIDGDGTFNV----SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW- 82 (712)
Q Consensus 8 ~~I~l~~l~k~y~~----~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~- 82 (712)
++|++.|+++.|+. .+|++++++++.|+ +++|+||||||||||||+|+|+. +| +|++...+.-.
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge------~~~i~G~nGsGKSTLl~~l~Gl~----~~-~G~I~i~g~~i~ 84 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGT------TCALVGHTGSGKSTIAKLLYRFY----DA-EGDIKIGGKNVN 84 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTC------EEEEECSTTSSHHHHHHHHTTSS----CC-EEEEEETTEEGG
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCC------EEEEECCCCCCHHHHHHHHhccC----CC-CeEEEECCEEhh
Confidence 46999999999953 47999999999999 99999999999999999999998 66 78854322100
Q ss_pred ------eccccCC-------Cccchhccc-------------------cCCCc-------------ccccchhhHHHHHH
Q 005138 83 ------MARCAGI-------EPCTLIMDL-------------------EGTDG-------------RERGEDDTAFEKQS 117 (712)
Q Consensus 83 ------~~~~~~~-------~~~~~v~d~-------------------~g~~~-------------~~r~~~~~~ferQr 117 (712)
+...+++ .+. .+.+. .++.. ..+....+..||||
T Consensus 85 ~~~~~~~~~~i~~v~Q~~~l~~~-tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqR 163 (260)
T 2ghi_A 85 KYNRNSIRSIIGIVPQDTILFNE-TIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQR 163 (260)
T ss_dssp GBCHHHHHTTEEEECSSCCCCSE-EHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHH
T ss_pred hcCHHHHhccEEEEcCCCccccc-CHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHH
Confidence 0011111 110 11111 01100 01123456679999
Q ss_pred HHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEE
Q 005138 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (712)
Q Consensus 118 v~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~ 194 (712)
+++|+|++ ++|||||||++||+.. ...+++.+.++. + |+|+|+||||++.+.. |++++++.+ |+++.
T Consensus 164 v~lAraL~~~p~lllLDEPts~LD~~~------~~~i~~~l~~l~-~-~~tviivtH~~~~~~~-~d~i~~l~~-G~i~~ 233 (260)
T 2ghi_A 164 IAIARCLLKDPKIVIFDEATSSLDSKT------EYLFQKAVEDLR-K-NRTLIIIAHRLSTISS-AESIILLNK-GKIVE 233 (260)
T ss_dssp HHHHHHHHHCCSEEEEECCCCTTCHHH------HHHHHHHHHHHT-T-TSEEEEECSSGGGSTT-CSEEEEEET-TEEEE
T ss_pred HHHHHHHHcCCCEEEEECccccCCHHH------HHHHHHHHHHhc-C-CCEEEEEcCCHHHHHh-CCEEEEEEC-CEEEE
Confidence 99999999 9999999999999998 999999999985 3 7999999999988764 999999988 99999
Q ss_pred ecCccccc
Q 005138 195 SVPKPQAH 202 (712)
Q Consensus 195 ~g~~~e~~ 202 (712)
.|++++++
T Consensus 234 ~g~~~~l~ 241 (260)
T 2ghi_A 234 KGTHKDLL 241 (260)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 98876654
No 35
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.91 E-value=3.1e-25 Score=224.65 Aligned_cols=166 Identities=14% Similarity=0.148 Sum_probs=124.3
Q ss_pred ccEEEEeeeeeeccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-------
Q 005138 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG------- 80 (712)
Q Consensus 8 ~~I~l~~l~k~y~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g------- 80 (712)
.+|++.|+++.|+..+|+++++++..|+ +++|+||||||||||||+|+|+. +|++|++...+.
T Consensus 9 ~~l~~~~ls~~y~~~il~~vsl~i~~Ge------~~~iiG~NGsGKSTLlk~l~Gl~----~p~~G~I~~~g~~~~~~~~ 78 (214)
T 1sgw_A 9 SKLEIRDLSVGYDKPVLERITMTIEKGN------VVNFHGPNGIGKTTLLKTISTYL----KPLKGEIIYNGVPITKVKG 78 (214)
T ss_dssp CEEEEEEEEEESSSEEEEEEEEEEETTC------CEEEECCTTSSHHHHHHHHTTSS----CCSEEEEEETTEEGGGGGG
T ss_pred ceEEEEEEEEEeCCeEEeeeEEEEcCCC------EEEEECCCCCCHHHHHHHHhcCC----CCCCeEEEECCEEhhhhcC
Confidence 4799999999995467999999999999 99999999999999999999999 899998643221
Q ss_pred -e-eeccccCCCccchh-----------------------ccccCCCc-ccccchhhHHHHHHHHHHHHHH---HHhhhc
Q 005138 81 -I-WMARCAGIEPCTLI-----------------------MDLEGTDG-RERGEDDTAFEKQSALFALAVS---DIVLIN 131 (712)
Q Consensus 81 -i-~~~~~~~~~~~~~v-----------------------~d~~g~~~-~~r~~~~~~ferQrv~~A~Ala---~iLlLD 131 (712)
+ ++.......+...+ ++..|+.. .......+..||||+++|+|++ ++||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLD 158 (214)
T 1sgw_A 79 KIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLD 158 (214)
T ss_dssp GEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 1 11111111111111 11112221 2222345667999999999999 999999
Q ss_pred cccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeE
Q 005138 132 MWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (712)
Q Consensus 132 EP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I 192 (712)
|||++||+.. ...+++.+.++.++ |+|||+||||++.+...|++++++ . |+|
T Consensus 159 EPts~LD~~~------~~~l~~~l~~~~~~-g~tiiivtHd~~~~~~~~d~v~~~-~-~~~ 210 (214)
T 1sgw_A 159 DPVVAIDEDS------KHKVLKSILEILKE-KGIVIISSREELSYCDVNENLHKY-S-TKI 210 (214)
T ss_dssp STTTTSCTTT------HHHHHHHHHHHHHH-HSEEEEEESSCCTTSSEEEEGGGG-B-C--
T ss_pred CCCcCCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEe-C-Ccc
Confidence 9999999998 99999999998754 899999999999988877776644 4 555
No 36
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.90 E-value=2.2e-24 Score=236.66 Aligned_cols=175 Identities=15% Similarity=0.095 Sum_probs=131.7
Q ss_pred ccEEEEeeeeee--c-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-e--
Q 005138 8 CSTQLIDGDGTF--N-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-I-- 81 (712)
Q Consensus 8 ~~I~l~~l~k~y--~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i-- 81 (712)
..|++.|+++.| + ..+|++++++|..|+ +++|+||||||||||||+|+|+. + ++|++...+. +
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge------~~~llGpsGsGKSTLLr~iaGl~----~-~~G~I~i~G~~i~~ 86 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQ------RVGLLGRTGSGKSTLLSAFLRLL----N-TEGEIQIDGVSWDS 86 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTC------EEEEEESTTSSHHHHHHHHHTCS----E-EEEEEEESSCBTTS
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCC------EEEEECCCCChHHHHHHHHhCCC----C-CCeEEEECCEECCc
Confidence 469999999999 3 357999999999999 99999999999999999999998 5 7788543221 0
Q ss_pred -e---eccccC-------CCccchhcccc------------------CCCcc--cccch-----------hhHHHHHHHH
Q 005138 82 -W---MARCAG-------IEPCTLIMDLE------------------GTDGR--ERGED-----------DTAFEKQSAL 119 (712)
Q Consensus 82 -~---~~~~~~-------~~~~~~v~d~~------------------g~~~~--~r~~~-----------~~~ferQrv~ 119 (712)
. +.+.++ ..+ ..+.+.. |+... ..... .+..||||++
T Consensus 87 ~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRva 165 (390)
T 3gd7_A 87 ITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMC 165 (390)
T ss_dssp SCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHH
T ss_pred CChHHHhCCEEEEcCCcccCc-cCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHH
Confidence 0 001111 111 1121111 11100 00111 5677999999
Q ss_pred HHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEec
Q 005138 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 120 ~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g 196 (712)
||+|++ ++|||||||++||+.. +..+.+.++++. .++|+|+||||++.+. .||++++|.+ |+|+..|
T Consensus 166 lARAL~~~P~lLLLDEPts~LD~~~------~~~l~~~l~~~~--~~~tvi~vtHd~e~~~-~aDri~vl~~-G~i~~~g 235 (390)
T 3gd7_A 166 LARSVLSKAKILLLDEPSAHLDPVT------YQIIRRTLKQAF--ADCTVILCEARIEAML-ECDQFLVIEE-NKVRQYD 235 (390)
T ss_dssp HHHHHHTTCCEEEEESHHHHSCHHH------HHHHHHHHHTTT--TTSCEEEECSSSGGGT-TCSEEEEEET-TEEEEES
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHH------HHHHHHHHHHHh--CCCEEEEEEcCHHHHH-hCCEEEEEEC-CEEEEEC
Confidence 999999 9999999999999988 889999988764 3799999999986554 5999999998 9999999
Q ss_pred CcccccCC
Q 005138 197 PKPQAHME 204 (712)
Q Consensus 197 ~~~e~~~~ 204 (712)
++.+++..
T Consensus 236 ~~~el~~~ 243 (390)
T 3gd7_A 236 SILELYHY 243 (390)
T ss_dssp SHHHHHHC
T ss_pred CHHHHHhC
Confidence 99887754
No 37
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.90 E-value=1.1e-24 Score=230.45 Aligned_cols=173 Identities=14% Similarity=0.129 Sum_probs=120.3
Q ss_pred ccEEEEeeeeeeccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCe-eeccc
Q 005138 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGI-WMARC 86 (712)
Q Consensus 8 ~~I~l~~l~k~y~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi-~~~~~ 86 (712)
.+|++.|+++.+ ..+++++++++..|+ +++|+||||||||||||+|+|+. +|++|++...+.+ ++...
T Consensus 39 ~~l~~~~l~~~~-~~vl~~isl~i~~Ge------~~~i~G~NGsGKSTLlk~l~Gl~----~p~~G~I~~~g~i~~v~Q~ 107 (290)
T 2bbs_A 39 DSLSFSNFSLLG-TPVLKDINFKIERGQ------LLAVAGSTGAGKTSLLMMIMGEL----EPSEGKIKHSGRISFCSQN 107 (290)
T ss_dssp -----------C-CCSEEEEEEEECTTC------EEEEEESTTSSHHHHHHHHTTSS----CEEEEEEECCSCEEEECSS
T ss_pred ceEEEEEEEEcC-ceEEEeeEEEEcCCC------EEEEECCCCCcHHHHHHHHhcCC----CCCCcEEEECCEEEEEeCC
Confidence 368999999875 457999999999999 99999999999999999999999 8999986554432 12111
Q ss_pred cCCCccchhccc-----------------cCCCcc-------------cccchhhHHHHHHHHHHHHHH---HHhhhccc
Q 005138 87 AGIEPCTLIMDL-----------------EGTDGR-------------ERGEDDTAFEKQSALFALAVS---DIVLINMW 133 (712)
Q Consensus 87 ~~~~~~~~v~d~-----------------~g~~~~-------------~r~~~~~~ferQrv~~A~Ala---~iLlLDEP 133 (712)
....+. .+.+. .++... ......+.+||||+++|+|++ ++||||||
T Consensus 108 ~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEP 186 (290)
T 2bbs_A 108 SWIMPG-TIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP 186 (290)
T ss_dssp CCCCSS-BHHHHHHTTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred CccCcc-cHHHHhhCcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECC
Confidence 111111 11111 111000 011245667999999999999 99999999
Q ss_pred cCCCchhhhhChhhHHHHHHHH-HHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCccccc
Q 005138 134 CHDIGREQAANKPLLKTVFQVM-MRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAH 202 (712)
Q Consensus 134 ~~~LD~~~~a~~~l~~~v~e~l-~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~~ 202 (712)
|++||+.. ...+++.+ .++ . .|+|||+||||++.+. .|++++++.+ |+++..|++.+++
T Consensus 187 ts~LD~~~------~~~i~~~ll~~~-~-~~~tviivtHd~~~~~-~~d~i~~l~~-G~i~~~g~~~~l~ 246 (290)
T 2bbs_A 187 FGYLDVLT------EKEIFESCVCKL-M-ANKTRILVTSKMEHLK-KADKILILHE-GSSYFYGTFSELQ 246 (290)
T ss_dssp TTTCCHHH------HHHHHHHCCCCC-T-TTSEEEEECCCHHHHH-HSSEEEEEET-TEEEEEECHHHHH
T ss_pred cccCCHHH------HHHHHHHHHHHh-h-CCCEEEEEecCHHHHH-cCCEEEEEEC-CeEEEeCCHHHHh
Confidence 99999998 88888864 344 3 3899999999998775 4999999988 9999999876654
No 38
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.88 E-value=4e-23 Score=238.08 Aligned_cols=175 Identities=15% Similarity=0.089 Sum_probs=134.2
Q ss_pred cEEEEeeeeeecc---ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-----
Q 005138 9 STQLIDGDGTFNV---SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG----- 80 (712)
Q Consensus 9 ~I~l~~l~k~y~~---~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g----- 80 (712)
.|++.|+++.|+. .+|++++++++.|+ +++|+||||||||||+++|.|+. +|++|++...+-
T Consensus 339 ~i~~~~v~~~y~~~~~~~l~~isl~i~~G~------~~~ivG~sGsGKSTll~~l~g~~----~p~~G~i~~~g~~~~~~ 408 (578)
T 4a82_A 339 RIDIDHVSFQYNDNEAPILKDINLSIEKGE------TVAFVGMSGGGKSTLINLIPRFY----DVTSGQILIDGHNIKDF 408 (578)
T ss_dssp CEEEEEEEECSCSSSCCSEEEEEEEECTTC------EEEEECSTTSSHHHHHTTTTTSS----CCSEEEEEETTEEGGGS
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEECCCC------EEEEECCCCChHHHHHHHHhcCC----CCCCcEEEECCEEhhhC
Confidence 5999999999942 47999999999999 99999999999999999999999 899998543221
Q ss_pred --------e-eeccccCCCccchhcccc-------------------C-------CC------cccccchhhHHHHHHHH
Q 005138 81 --------I-WMARCAGIEPCTLIMDLE-------------------G-------TD------GRERGEDDTAFEKQSAL 119 (712)
Q Consensus 81 --------i-~~~~~~~~~~~~~v~d~~-------------------g-------~~------~~~r~~~~~~ferQrv~ 119 (712)
+ ++.+.....+. .+.|+. + ++ -.+++...+.+||||++
T Consensus 409 ~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~ 487 (578)
T 4a82_A 409 LTGSLRNQIGLVQQDNILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLS 487 (578)
T ss_dssp CHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHH
T ss_pred CHHHHhhheEEEeCCCccCcc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHH
Confidence 0 01111001110 111100 0 00 01223345677999999
Q ss_pred HHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEec
Q 005138 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 120 ~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g 196 (712)
+|+|++ ++||+||||++||+.. ...+.+.+.++.+ ++|+|+||||++.+.. ||+++++++ |+++..|
T Consensus 488 lAral~~~p~illlDEpts~LD~~~------~~~i~~~l~~~~~--~~t~i~itH~l~~~~~-~d~i~~l~~-G~i~~~g 557 (578)
T 4a82_A 488 IARIFLNNPPILILDEATSALDLES------ESIIQEALDVLSK--DRTTLIVAHRLSTITH-ADKIVVIEN-GHIVETG 557 (578)
T ss_dssp HHHHHHHCCSEEEEESTTTTCCHHH------HHHHHHHHHHHTT--TSEEEEECSSGGGTTT-CSEEEEEET-TEEEEEE
T ss_pred HHHHHHcCCCEEEEECccccCCHHH------HHHHHHHHHHHcC--CCEEEEEecCHHHHHc-CCEEEEEEC-CEEEEEC
Confidence 999999 9999999999999998 8899999988853 7899999999998764 999999998 9999999
Q ss_pred CcccccCC
Q 005138 197 PKPQAHME 204 (712)
Q Consensus 197 ~~~e~~~~ 204 (712)
++++++..
T Consensus 558 ~~~el~~~ 565 (578)
T 4a82_A 558 THRELIAK 565 (578)
T ss_dssp CHHHHHHT
T ss_pred CHHHHHhC
Confidence 98877643
No 39
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.88 E-value=7e-23 Score=236.24 Aligned_cols=175 Identities=14% Similarity=0.140 Sum_probs=133.9
Q ss_pred cEEEEeeeeeec---cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-e---
Q 005138 9 STQLIDGDGTFN---VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-I--- 81 (712)
Q Consensus 9 ~I~l~~l~k~y~---~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i--- 81 (712)
+|++.|+++.|+ ..++++++++++.|+ +++|+||||||||||+|+|+|+. +|++|++...+. +
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~------~~~ivG~sGsGKSTll~~l~g~~----~p~~G~i~~~g~~~~~~ 410 (582)
T 3b5x_A 341 EVDVKDVTFTYQGKEKPALSHVSFSIPQGK------TVALVGRSGSGKSTIANLFTRFY----DVDSGSICLDGHDVRDY 410 (582)
T ss_pred eEEEEEEEEEcCCCCccccccceEEECCCC------EEEEECCCCCCHHHHHHHHhcCC----CCCCCEEEECCEEhhhC
Confidence 699999999995 347999999999999 99999999999999999999999 899998543221 0
Q ss_pred ---eeccccCC---Ccc---chhcccc--------------------CCC-------------cccccchhhHHHHHHHH
Q 005138 82 ---WMARCAGI---EPC---TLIMDLE--------------------GTD-------------GRERGEDDTAFEKQSAL 119 (712)
Q Consensus 82 ---~~~~~~~~---~~~---~~v~d~~--------------------g~~-------------~~~r~~~~~~ferQrv~ 119 (712)
.++..+++ ++. ..+.|+. |+. -.+++...+.+||||++
T Consensus 411 ~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~ 490 (582)
T 3b5x_A 411 KLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVA 490 (582)
T ss_pred CHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHH
Confidence 00111111 000 0111110 100 00122344566999999
Q ss_pred HHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEec
Q 005138 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 120 ~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g 196 (712)
+|+|++ ++|||||||++||+.. .+.+.+.+.++. + |+|+|+||||++.+. .||+++++++ |+++..|
T Consensus 491 iAral~~~p~illlDEpts~LD~~~------~~~i~~~l~~~~-~-~~tvi~itH~~~~~~-~~d~i~~l~~-G~i~~~g 560 (582)
T 3b5x_A 491 IARALLRDAPVLILDEATSALDTES------ERAIQAALDELQ-K-NKTVLVIAHRLSTIE-QADEILVVDE-GEIIERG 560 (582)
T ss_pred HHHHHHcCCCEEEEECccccCCHHH------HHHHHHHHHHHc-C-CCEEEEEecCHHHHH-hCCEEEEEEC-CEEEEEC
Confidence 999999 9999999999999998 999999999985 3 899999999998776 5999999988 9999999
Q ss_pred CcccccC
Q 005138 197 PKPQAHM 203 (712)
Q Consensus 197 ~~~e~~~ 203 (712)
++++++.
T Consensus 561 ~~~~l~~ 567 (582)
T 3b5x_A 561 RHADLLA 567 (582)
T ss_pred CHHHHHh
Confidence 9877654
No 40
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.88 E-value=4.8e-23 Score=238.31 Aligned_cols=173 Identities=15% Similarity=0.164 Sum_probs=133.7
Q ss_pred cEEEEeeeeeec--cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeee---
Q 005138 9 STQLIDGDGTFN--VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM--- 83 (712)
Q Consensus 9 ~I~l~~l~k~y~--~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~--- 83 (712)
.|+++|+++.|+ ..+|++++++++.|+ +++|+||||||||||+|+|+|+. +|++|++...+ ..+
T Consensus 354 ~i~~~~v~~~y~~~~~~l~~isl~i~~G~------~~~ivG~sGsGKSTll~~l~g~~----~p~~G~i~~~g-~~i~~~ 422 (598)
T 3qf4_B 354 EIEFKNVWFSYDKKKPVLKDITFHIKPGQ------KVALVGPTGSGKTTIVNLLMRFY----DVDRGQILVDG-IDIRKI 422 (598)
T ss_dssp CEEEEEEECCSSSSSCSCCSEEEECCTTC------EEEEECCTTSSTTHHHHHHTTSS----CCSEEEEEETT-EEGGGS
T ss_pred eEEEEEEEEECCCCCccccceEEEEcCCC------EEEEECCCCCcHHHHHHHHhcCc----CCCCeEEEECC-EEhhhC
Confidence 599999999995 347999999999999 99999999999999999999999 89999854322 111
Q ss_pred -----ccccC-------CCccchhcccc-------------------CC-------C------cccccchhhHHHHHHHH
Q 005138 84 -----ARCAG-------IEPCTLIMDLE-------------------GT-------D------GRERGEDDTAFEKQSAL 119 (712)
Q Consensus 84 -----~~~~~-------~~~~~~v~d~~-------------------g~-------~------~~~r~~~~~~ferQrv~ 119 (712)
+..++ ..+. .+.++. +. + -.+++...+.+||||++
T Consensus 423 ~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~ 501 (598)
T 3qf4_B 423 KRSSLRSSIGIVLQDTILFST-TVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLA 501 (598)
T ss_dssp CHHHHHHHEEEECTTCCCCSS-BHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHH
T ss_pred CHHHHHhceEEEeCCCccccc-cHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHH
Confidence 00111 0000 111100 00 0 00111234567999999
Q ss_pred HHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEec
Q 005138 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 120 ~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g 196 (712)
+|+|++ ++|||||||++||+.. ...+.+.+.++. + |+|+|+|||+++.+.. ||+++++++ |+++..|
T Consensus 502 iAral~~~p~illlDEpts~LD~~~------~~~i~~~l~~~~-~-~~t~i~itH~l~~~~~-~d~i~~l~~-G~i~~~g 571 (598)
T 3qf4_B 502 ITRAFLANPKILILDEATSNVDTKT------EKSIQAAMWKLM-E-GKTSIIIAHRLNTIKN-ADLIIVLRD-GEIVEMG 571 (598)
T ss_dssp HHHHHHTCCSEEEECCCCTTCCHHH------HHHHHHHHHHHH-T-TSEEEEESCCTTHHHH-CSEEEEECS-SSEEECS
T ss_pred HHHHHhcCCCEEEEECCccCCCHHH------HHHHHHHHHHHc-C-CCEEEEEecCHHHHHc-CCEEEEEEC-CEEEEEC
Confidence 999999 9999999999999998 999999999985 3 8999999999998765 999999988 9999999
Q ss_pred CcccccC
Q 005138 197 PKPQAHM 203 (712)
Q Consensus 197 ~~~e~~~ 203 (712)
++++++.
T Consensus 572 ~~~~l~~ 578 (598)
T 3qf4_B 572 KHDELIQ 578 (598)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9887654
No 41
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.88 E-value=7.1e-23 Score=236.18 Aligned_cols=173 Identities=14% Similarity=0.091 Sum_probs=133.8
Q ss_pred cEEEEeeeeeec---cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeee--
Q 005138 9 STQLIDGDGTFN---VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM-- 83 (712)
Q Consensus 9 ~I~l~~l~k~y~---~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~-- 83 (712)
+|++.|+++.|+ ..+|++++++++.|+ +++|+||||||||||+++|+|+. +|++|++...+ ..+
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~------~~~ivG~sGsGKSTLl~~l~g~~----~p~~G~i~~~g-~~~~~ 409 (582)
T 3b60_A 341 DLEFRNVTFTYPGREVPALRNINLKIPAGK------TVALVGRSGSGKSTIASLITRFY----DIDEGHILMDG-HDLRE 409 (582)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTC------EEEEEECTTSSHHHHHHHHTTTT----CCSEEEEEETT-EETTT
T ss_pred cEEEEEEEEEcCCCCCccccceeEEEcCCC------EEEEECCCCCCHHHHHHHHhhcc----CCCCCeEEECC-EEccc
Confidence 699999999995 357999999999999 99999999999999999999999 89999854322 110
Q ss_pred ------ccccC-------CCccchhcccc--------------------CCC-------------cccccchhhHHHHHH
Q 005138 84 ------ARCAG-------IEPCTLIMDLE--------------------GTD-------------GRERGEDDTAFEKQS 117 (712)
Q Consensus 84 ------~~~~~-------~~~~~~v~d~~--------------------g~~-------------~~~r~~~~~~ferQr 117 (712)
++.++ ..+. .+.|+. |.. -.+++...+.+||||
T Consensus 410 ~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qr 488 (582)
T 3b60_A 410 YTLASLRNQVALVSQNVHLFND-TVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQR 488 (582)
T ss_dssp BCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHH
T ss_pred cCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 01111 1110 111110 110 001223446679999
Q ss_pred HHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEE
Q 005138 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (712)
Q Consensus 118 v~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~ 194 (712)
+++|+|++ ++|||||||++||+.. .+.+.+.+.++.+ |+|+|+||||++.+. .||+++++++ |+++.
T Consensus 489 l~iAral~~~p~illlDEpts~LD~~~------~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~d~i~~l~~-G~i~~ 558 (582)
T 3b60_A 489 IAIARALLRDSPILILDEATSALDTES------ERAIQAALDELQK--NRTSLVIAHRLSTIE-QADEIVVVED-GIIVE 558 (582)
T ss_dssp HHHHHHHHHCCSEEEEETTTSSCCHHH------HHHHHHHHHHHHT--TSEEEEECSCGGGTT-TCSEEEEEET-TEEEE
T ss_pred HHHHHHHHhCCCEEEEECccccCCHHH------HHHHHHHHHHHhC--CCEEEEEeccHHHHH-hCCEEEEEEC-CEEEE
Confidence 99999999 9999999999999998 9999999999863 899999999998776 5999999988 99999
Q ss_pred ecCcccccC
Q 005138 195 SVPKPQAHM 203 (712)
Q Consensus 195 ~g~~~e~~~ 203 (712)
.|++++++.
T Consensus 559 ~g~~~~l~~ 567 (582)
T 3b60_A 559 RGTHSELLA 567 (582)
T ss_dssp EECHHHHHH
T ss_pred ecCHHHHHH
Confidence 998877653
No 42
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.87 E-value=1.1e-22 Score=235.17 Aligned_cols=172 Identities=18% Similarity=0.175 Sum_probs=131.5
Q ss_pred EEEEeeeeeecc----ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeee--
Q 005138 10 TQLIDGDGTFNV----SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM-- 83 (712)
Q Consensus 10 I~l~~l~k~y~~----~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~-- 83 (712)
|++.|+++.|+. .+|++++++++.|+ +++|+||||||||||+|+|+|+. +|++|++...+ ..+
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~------~~~ivG~sGsGKSTLl~~l~g~~----~p~~G~i~~~g-~~i~~ 410 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGS------VTALVGPSGSGKSTVLSLLLRLY----DPASGTISLDG-HDIRQ 410 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTC------EEEEECCTTSSSTHHHHHHTTSS----CCSEEEEEETT-EETTT
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCC------EEEEECCCCCCHHHHHHHHhcCc----CCCCcEEEECC-EEhhh
Confidence 999999999952 37999999999999 99999999999999999999999 89999854322 110
Q ss_pred ------ccccC-------CCccchhcccc----------------------CC-------C------cccccchhhHHHH
Q 005138 84 ------ARCAG-------IEPCTLIMDLE----------------------GT-------D------GRERGEDDTAFEK 115 (712)
Q Consensus 84 ------~~~~~-------~~~~~~v~d~~----------------------g~-------~------~~~r~~~~~~fer 115 (712)
++.++ ..+. .+.++. |. + -.+++...+.+||
T Consensus 411 ~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~ 489 (595)
T 2yl4_A 411 LNPVWLRSKIGTVSQEPILFSC-SIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQK 489 (595)
T ss_dssp BCHHHHHHSEEEECSSCCCCSS-BHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHH
T ss_pred CCHHHHHhceEEEccCCcccCC-CHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHH
Confidence 01111 0010 111100 10 0 0112234566799
Q ss_pred HHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeE
Q 005138 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKI 192 (712)
Q Consensus 116 Qrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I 192 (712)
||+++|+|++ ++|||||||++||+.. .+.+.+.+.++.+ |+|+|+||||++.+. .||+++++++ |++
T Consensus 490 qrv~iAral~~~p~illlDEpts~LD~~~------~~~i~~~l~~~~~--~~tvi~itH~~~~~~-~~d~i~~l~~-G~i 559 (595)
T 2yl4_A 490 QRIAIARALLKNPKILLLDEATSALDAEN------EYLVQEALDRLMD--GRTVLVIAHRLSTIK-NANMVAVLDQ-GKI 559 (595)
T ss_dssp HHHHHHHHHHHCCSEEEEECCCSSCCHHH------HHHHHHHHHHHHT--TSEEEEECCCHHHHH-HSSEEEEEET-TEE
T ss_pred HHHHHHHHHHcCCCEEEEECcccCCCHHH------HHHHHHHHHHHhc--CCEEEEEecCHHHHH-cCCEEEEEEC-CEE
Confidence 9999999999 9999999999999998 9999999999864 789999999998775 4999999988 999
Q ss_pred EEecCcccccC
Q 005138 193 WDSVPKPQAHM 203 (712)
Q Consensus 193 ~~~g~~~e~~~ 203 (712)
+..|++++++.
T Consensus 560 ~~~g~~~~l~~ 570 (595)
T 2yl4_A 560 TEYGKHEELLS 570 (595)
T ss_dssp EEEECSCC---
T ss_pred EEECCHHHHHh
Confidence 99999887764
No 43
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.87 E-value=1e-22 Score=235.00 Aligned_cols=174 Identities=16% Similarity=0.124 Sum_probs=134.3
Q ss_pred cEEEEeeeeeec---cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-e---
Q 005138 9 STQLIDGDGTFN---VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-I--- 81 (712)
Q Consensus 9 ~I~l~~l~k~y~---~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i--- 81 (712)
.|+++|+++.|+ ..+|++++++++.|+ +++|+||||||||||+|+|+|+. +|++|++...+- +
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge------~~~ivG~sGsGKSTll~~l~g~~----~~~~G~i~i~g~~i~~~ 410 (587)
T 3qf4_A 341 SVSFENVEFRYFENTDPVLSGVNFSVKPGS------LVAVLGETGSGKSTLMNLIPRLI----DPERGRVEVDELDVRTV 410 (587)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTC------EEEEECSSSSSHHHHHHTTTTSS----CCSEEEEEESSSBGGGB
T ss_pred cEEEEEEEEEcCCCCCcceeceEEEEcCCC------EEEEECCCCCCHHHHHHHHhCCc----cCCCcEEEECCEEcccC
Confidence 599999999993 347999999999999 99999999999999999999999 899998543221 0
Q ss_pred ---eeccccC-------CCccchhcccc------------------------------CCC--cccccchhhHHHHHHHH
Q 005138 82 ---WMARCAG-------IEPCTLIMDLE------------------------------GTD--GRERGEDDTAFEKQSAL 119 (712)
Q Consensus 82 ---~~~~~~~-------~~~~~~v~d~~------------------------------g~~--~~~r~~~~~~ferQrv~ 119 (712)
.+++.++ ..+. .+.|+. |.+ -.+++...+..||||++
T Consensus 411 ~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~ 489 (587)
T 3qf4_A 411 KLKDLRGHISAVPQETVLFSG-TIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLS 489 (587)
T ss_dssp CHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHH
T ss_pred CHHHHHhheEEECCCCcCcCc-cHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHH
Confidence 0011111 0000 111110 111 01223345667999999
Q ss_pred HHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEec
Q 005138 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 120 ~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g 196 (712)
+|||++ ++|||||||++||+.. .+.+.+.+.++. .|+|+|+|||+++.+. .||+++++++ |+|+..|
T Consensus 490 lARal~~~p~illlDEpts~LD~~~------~~~i~~~l~~~~--~~~tvi~itH~l~~~~-~~d~i~vl~~-G~i~~~g 559 (587)
T 3qf4_A 490 IARALVKKPKVLILDDCTSSVDPIT------EKRILDGLKRYT--KGCTTFIITQKIPTAL-LADKILVLHE-GKVAGFG 559 (587)
T ss_dssp HHHHHHTCCSEEEEESCCTTSCHHH------HHHHHHHHHHHS--TTCEEEEEESCHHHHT-TSSEEEEEET-TEEEEEE
T ss_pred HHHHHHcCCCEEEEECCcccCCHHH------HHHHHHHHHHhC--CCCEEEEEecChHHHH-hCCEEEEEEC-CEEEEEC
Confidence 999999 9999999999999998 999999999874 3899999999998775 6999999988 9999999
Q ss_pred CcccccC
Q 005138 197 PKPQAHM 203 (712)
Q Consensus 197 ~~~e~~~ 203 (712)
+++++++
T Consensus 560 ~~~el~~ 566 (587)
T 3qf4_A 560 THKELLE 566 (587)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9877653
No 44
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.87 E-value=9.2e-23 Score=235.72 Aligned_cols=180 Identities=17% Similarity=0.149 Sum_probs=136.9
Q ss_pred ccEEEEeeeeeeccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCe-eeccc
Q 005138 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGI-WMARC 86 (712)
Q Consensus 8 ~~I~l~~l~k~y~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi-~~~~~ 86 (712)
.++++.|+++.|+...++.+++++..|+ +++|+||||||||||||+|+|+. +|++|++.....+ ++...
T Consensus 356 ~~l~~~~l~~~~~~~~l~~~~~~v~~Ge------i~~i~G~NGsGKSTLlk~l~Gl~----~p~~G~I~~~~~i~~v~Q~ 425 (607)
T 3bk7_A 356 TLVEYPRLVKDYGSFKLEVEPGEIRKGE------VIGIVGPNGIGKTTFVKMLAGVE----EPTEGKVEWDLTVAYKPQY 425 (607)
T ss_dssp EEEEECCEEEECSSCEEEECCEEEETTC------EEEEECCTTSSHHHHHHHHHTSS----CCSBSCCCCCCCEEEECSS
T ss_pred eEEEEeceEEEecceEEEecccccCCCC------EEEEECCCCCCHHHHHHHHhcCC----CCCceEEEEeeEEEEEecC
Confidence 3699999999996546788888899999 99999999999999999999999 8999986443222 11111
Q ss_pred cCCCccchh---------------------ccccCCCc--ccccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchh
Q 005138 87 AGIEPCTLI---------------------MDLEGTDG--RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGRE 140 (712)
Q Consensus 87 ~~~~~~~~v---------------------~d~~g~~~--~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~ 140 (712)
........+ ++..|+.. .......+..||||++||+|++ ++|||||||++||+.
T Consensus 426 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~ 505 (607)
T 3bk7_A 426 IKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVE 505 (607)
T ss_dssp CCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHH
T ss_pred ccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHH
Confidence 111111111 11112211 1112344566999999999999 999999999999999
Q ss_pred hhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceec-CCeEEEecCcccccC
Q 005138 141 QAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED-IQKIWDSVPKPQAHM 203 (712)
Q Consensus 141 ~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~-~G~I~~~g~~~e~~~ 203 (712)
. +..++++++++.++.|.|+|+||||++++..+|++++++.+ .|++...|++.+++.
T Consensus 506 ~------~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 506 Q------RLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp H------HHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred H------HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 9 99999999998754589999999999999889999988874 478888888877654
No 45
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.87 E-value=7.2e-23 Score=233.85 Aligned_cols=180 Identities=17% Similarity=0.137 Sum_probs=136.5
Q ss_pred ccEEEEeeeeeeccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCe-eeccc
Q 005138 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGI-WMARC 86 (712)
Q Consensus 8 ~~I~l~~l~k~y~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi-~~~~~ 86 (712)
.++++.|+++.|+...++.+++++..|+ +++|+|||||||||||++|+|+. +|++|++.....+ ++...
T Consensus 286 ~~l~~~~l~~~~~~~~l~~~~~~i~~Ge------~~~i~G~NGsGKSTLlk~l~Gl~----~p~~G~i~~~~~i~~v~Q~ 355 (538)
T 1yqt_A 286 TLVTYPRLVKDYGSFRLEVEPGEIKKGE------VIGIVGPNGIGKTTFVKMLAGVE----EPTEGKIEWDLTVAYKPQY 355 (538)
T ss_dssp EEEEECCEEEEETTEEEEECCEEEETTC------EEEEECCTTSSHHHHHHHHHTSS----CCSBCCCCCCCCEEEECSS
T ss_pred eEEEEeeEEEEECCEEEEeCccccCCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECceEEEEecC
Confidence 3699999999996545788888899999 99999999999999999999999 8999986542222 11111
Q ss_pred cCCCccchh---------------------ccccCCCc--ccccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchh
Q 005138 87 AGIEPCTLI---------------------MDLEGTDG--RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGRE 140 (712)
Q Consensus 87 ~~~~~~~~v---------------------~d~~g~~~--~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~ 140 (712)
........+ ++..|+.. .......+..||||++||++++ ++|||||||++||+.
T Consensus 356 ~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~ 435 (538)
T 1yqt_A 356 IKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVE 435 (538)
T ss_dssp CCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHH
T ss_pred CcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHH
Confidence 111010011 11112211 1112344567999999999999 999999999999999
Q ss_pred hhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceec-CCeEEEecCcccccC
Q 005138 141 QAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED-IQKIWDSVPKPQAHM 203 (712)
Q Consensus 141 ~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~-~G~I~~~g~~~e~~~ 203 (712)
. +..+++++.++.++.|.|||+||||++++...|++++++.+ .|++...|++.+++.
T Consensus 436 ~------~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 436 Q------RLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp H------HHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred H------HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 8 99999999998654589999999999999989999998875 478888888877653
No 46
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.86 E-value=1.5e-22 Score=230.91 Aligned_cols=177 Identities=14% Similarity=0.055 Sum_probs=130.7
Q ss_pred ccEEEEeeeeeeccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC-Ceee-cc
Q 005138 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-GIWM-AR 85 (712)
Q Consensus 8 ~~I~l~~l~k~y~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~-gi~~-~~ 85 (712)
..+++.++++.|+...+...++++..|+ +++|+||||||||||||+|+|+. +|++|++...+ ++.+ ..
T Consensus 268 ~~l~~~~l~~~~~~~~l~~~~~~i~~Ge------i~~i~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~~~~i~~~~q 337 (538)
T 3ozx_A 268 TKMKWTKIIKKLGDFQLVVDNGEAKEGE------IIGILGPNGIGKTTFARILVGEI----TADEGSVTPEKQILSYKPQ 337 (538)
T ss_dssp EEEEECCEEEEETTEEEEECCEEEETTC------EEEEECCTTSSHHHHHHHHTTSS----CCSBCCEESSCCCEEEECS
T ss_pred ceEEEcceEEEECCEEEEeccceECCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCcEEEECCeeeEeech
Confidence 3688999999996555777788889999 99999999999999999999999 89999864322 1211 11
Q ss_pred ccCCCccchh----------------------ccccCCCc--ccccchhhHHHHHHHHHHHHHH---HHhhhccccCCCc
Q 005138 86 CAGIEPCTLI----------------------MDLEGTDG--RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIG 138 (712)
Q Consensus 86 ~~~~~~~~~v----------------------~d~~g~~~--~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD 138 (712)
.........+ ++..|+.. .......+..|||||+||+|++ ++|||||||++||
T Consensus 338 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD 417 (538)
T 3ozx_A 338 RIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLD 417 (538)
T ss_dssp SCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCC
T ss_pred hcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCC
Confidence 1100000011 11111111 1122344667999999999999 9999999999999
Q ss_pred hhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceec-CCeEEEecCccc
Q 005138 139 REQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED-IQKIWDSVPKPQ 200 (712)
Q Consensus 139 ~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~-~G~I~~~g~~~e 200 (712)
+.. +..+++++.++.++.|+|||+||||++++..+||+++++.+ .|.+...+++..
T Consensus 418 ~~~------~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~ 474 (538)
T 3ozx_A 418 VEE------RYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVT 474 (538)
T ss_dssp HHH------HHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHH------HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHH
Confidence 998 99999999999765699999999999999999999999875 244444554433
No 47
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.85 E-value=3.2e-22 Score=231.04 Aligned_cols=181 Identities=17% Similarity=0.125 Sum_probs=133.0
Q ss_pred Eeeeeeecc--ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeee-ccccCC
Q 005138 13 IDGDGTFNV--SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWM-ARCAGI 89 (712)
Q Consensus 13 ~~l~k~y~~--~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~-~~~~~~ 89 (712)
.++...|.. ..++++++++..|+. .+|++++|+|||||||||||++|+|+. +|++|+.....++.+ ......
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~-~~GEiv~iiG~NGsGKSTLlk~l~Gl~----~p~~G~~~~~~~i~~~~q~~~~ 424 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEF-SDSEILVMMGENGTGKTTLIKLLAGAL----KPDEGQDIPKLNVSMKPQKIAP 424 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEEC-CTTCEEEEESCTTSSHHHHHHHHHTSS----CCSBCCCCCSCCEEEECSSCCC
T ss_pred cceeEEecCcccccCceEEEEecCcc-ccceEEEEECCCCCcHHHHHHHHhcCC----CCCCCcCccCCcEEEecccccc
Confidence 345566632 358899999998852 356799999999999999999999999 899997433223221 111110
Q ss_pred Cccchh---------------------ccccCCCc--ccccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhh
Q 005138 90 EPCTLI---------------------MDLEGTDG--RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAA 143 (712)
Q Consensus 90 ~~~~~v---------------------~d~~g~~~--~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a 143 (712)
.....+ ++..|+.. .......+..||||++||+||+ ++|||||||++||+..
T Consensus 425 ~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~-- 502 (608)
T 3j16_B 425 KFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQ-- 502 (608)
T ss_dssp CCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHH--
T ss_pred cCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHH--
Confidence 000001 01111111 1122345677999999999999 9999999999999998
Q ss_pred ChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceec-CCeEEEecCcccccCC
Q 005138 144 NKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED-IQKIWDSVPKPQAHME 204 (712)
Q Consensus 144 ~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~-~G~I~~~g~~~e~~~~ 204 (712)
...++++++++.++.|.|+|+||||++++..+||+++++.+ .|+++..|+|.+++..
T Consensus 503 ----~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 503 ----RIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp ----HHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred ----HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 99999999998655599999999999999989999999875 4899999998887653
No 48
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.83 E-value=3.3e-21 Score=225.77 Aligned_cols=88 Identities=8% Similarity=0.012 Sum_probs=76.7
Q ss_pred chhhHHHHHHHHHHHHHH---H--HhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccccc
Q 005138 108 EDDTAFEKQSALFALAVS---D--IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE 182 (712)
Q Consensus 108 ~~~~~ferQrv~~A~Ala---~--iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~ 182 (712)
...+..||||++||+||+ + +|||||||++||+.. ...++++++++.+. |.|||+||||++.+. .|++
T Consensus 201 ~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~------~~~l~~~l~~l~~~-g~tvi~vtHd~~~~~-~~d~ 272 (670)
T 3ux8_A 201 GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRD------NDRLIATLKSMRDL-GNTLIVVEHDEDTML-AADY 272 (670)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGG------HHHHHHHHHHHHHT-TCEEEEECCCHHHHH-HCSE
T ss_pred ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHH------HHHHHHHHHHHHHc-CCEEEEEeCCHHHHh-hCCE
Confidence 345667999999999999 5 999999999999998 99999999999765 999999999998765 4999
Q ss_pred ccce------ecCCeEEEecCcccccCC
Q 005138 183 PVLR------EDIQKIWDSVPKPQAHME 204 (712)
Q Consensus 183 ~~ll------~~~G~I~~~g~~~e~~~~ 204 (712)
++++ .+ |+++..|++.++..+
T Consensus 273 ii~l~~g~~~~~-G~i~~~g~~~~~~~~ 299 (670)
T 3ux8_A 273 LIDIGPGAGIHG-GEVVAAGTPEEVMND 299 (670)
T ss_dssp EEEECSSSGGGC-CSEEEEECHHHHHTC
T ss_pred EEEecccccccC-CEEEEecCHHHHhcC
Confidence 9888 55 999999998776543
No 49
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=99.83 E-value=5e-20 Score=204.87 Aligned_cols=335 Identities=16% Similarity=0.168 Sum_probs=222.3
Q ss_pred cEEEEee--eeee--ccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhcc------------------ccC
Q 005138 9 STQLIDG--DGTF--NVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGT------------------NFR 66 (712)
Q Consensus 9 ~I~l~~l--~k~y--~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl------------------~f~ 66 (712)
.|+++.. ++.+ +..+++.+......+ +.++.+|+|+|+.++|||||||.|+|. .|.
T Consensus 34 piqlv~~~~~~~l~v~~eal~~iL~~~~~~--~~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~ 111 (447)
T 3q5d_A 34 PVQVLIVKDDHSFELDETALNRILLSEAVR--DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFS 111 (447)
T ss_dssp EEEEEEECTTSCEEECHHHHHHHHCCTTTT--TSBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSC
T ss_pred ceeEEEECCCCCEEECHHHHHHHHhccccC--CCceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceec
Confidence 4666664 3433 344454444432222 357789999999999999999999985 343
Q ss_pred ccCCCCCeeeccCCeeecccc-------CCCccchhccccCCCcccccchhhHHHHHHHHHHHHH--HHHhhhccccCCC
Q 005138 67 EMDAFKGRSQTTKGIWMARCA-------GIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAV--SDIVLINMWCHDI 137 (712)
Q Consensus 67 ~m~p~sG~~~~t~gi~~~~~~-------~~~~~~~v~d~~g~~~~~r~~~~~~ferQrv~~A~Al--a~iLlLDEP~~~L 137 (712)
+ ..|+..+|.|||+...+ +....++++|++|+...++ .++.....||+++ ++++|.|.+- .+
T Consensus 112 ~---~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllDTeG~~~~~~-----~~~~d~~ifal~~lLSs~~IyN~~~-~i 182 (447)
T 3q5d_A 112 W---RGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTFDSQS-----TLRDSATVFALSTMISSIQVYNLSQ-NV 182 (447)
T ss_dssp S---CCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEEEECCCSSHH-----HHHHHHHHHHHHHHHCSEEEEEESS-SC
T ss_pred C---CCCCCCceeEEEEecCccccccCCCCcceEEEEcCCccccccc-----chhhhHHHHHHHHHHhhHHHHhhcc-cc
Confidence 2 22445688999987532 2234578899999976653 3455555566665 4999998642 23
Q ss_pred chhhhhChhhHHHHHHHHHHhhCCC----CceEEEEecCCCCcc---------cccccccceecCCeEEEecCccccc-C
Q 005138 138 GREQAANKPLLKTVFQVMMRLFSPR----KTTLMFVIRDKTRTP---------LENLEPVLREDIQKIWDSVPKPQAH-M 203 (712)
Q Consensus 138 D~~~~a~~~l~~~v~e~l~~L~~~~----g~tiL~VtHDl~~~~---------~~~~~~~ll~~~G~I~~~g~~~e~~-~ 203 (712)
+. .+...++.+.++.+...... -..+++|.||...-. .......+... . +..++.- -
T Consensus 183 ~~---~~l~~L~~~~e~~~~~~~~~~~~~fp~l~wvvRD~~~~l~~~~g~~t~~eyLe~~L~~~-~-----~~~~~~~~~ 253 (447)
T 3q5d_A 183 QE---DDLQHLQLFTEYGRLAMEETFLKPFQSLIFLVRDWSFPYEFSYGADGGAKFLEKRLKVS-G-----NQHEELQNV 253 (447)
T ss_dssp CH---HHHHHHHHHHHHHHHTSCCCSSCSEEEEEEEEEEECCTTTSCSBHHHHHHHHHHHHHSS-T-----TCSSSSCCH
T ss_pred cH---HHHHHHHHHHHHHHHHHHhhcccCCCceEEEEeeccccccccCCCCCHHHHHHHHHhhc-c-----CccHHHHHH
Confidence 32 23444677777655432221 238899999986421 11111121111 1 1111211 1
Q ss_pred Cccchhhh-cccccccccchh--------------hHHHHHHHHHHhhhhhccccCCCCCCCCCCCccccCCcccchHHH
Q 005138 204 ETPLSEFF-NVEVVALSSFEE--------------KEELFKEQVASLRQRFYHSVAPGGLAGDRRGVVPASGFSFSAHEI 268 (712)
Q Consensus 204 ~~~l~d~f-~~~~~~l~~~~~--------------~~~~f~~~v~~L~~~f~~~~~~~~~~~~~~~~ip~~g~~~~~~~~ 268 (712)
...+.++| +...+.+||... -.+.|.+++..|+..+..+..... +...+..++..+|..|++.+
T Consensus 254 r~~i~~~F~~~~cf~lp~P~~~v~~~~~~~~~l~~L~~~F~~~l~~l~~~i~~~~~~~~-K~~~G~~vtg~~L~~~~~~y 332 (447)
T 3q5d_A 254 RKHIHSCFTNISCFLLPHPGLKVATNPNFDGKLKEIDDEFIKNLKILIPWLLSPESLDI-KEINGNKITCRGLVEYFKAY 332 (447)
T ss_dssp HHHHHHHEEEEEEEEEECCCHHHHHCTTCCSBGGGSCHHHHHHHHHHHHHHHSTTTCCC-CEETTEECBHHHHHHHHHHH
T ss_pred HHHHHHhCCCceEEeccCcccchhhhhhhhcchhhccHHHHHHHHHHHHHhcCcccccc-cccCCEeecHHHHHHHHHHH
Confidence 24577888 577778887642 136799999999998884321110 11222345556699999999
Q ss_pred HHHHHhcCCCCCchhhHHHHhhchHHHHHHHHHhhhhhhhHHHHHHHHh-cCC---cchHHHHHHHHHHHHhhchhhhhc
Q 005138 269 WKVIKENKDLDLPAHKVMVATVRCEEIANEKYSSFAANEEWCELEAAVQ-SGP---ISSFGKKLSSILETCLSGYDGEVL 344 (712)
Q Consensus 269 w~~I~~n~dldlp~q~~~~a~~rc~ei~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~l~~yd~~a~ 344 (712)
|++|.++...++|++-+++|+++|+++..++++.|... +.+.+. ..+ .++|.......+++|++.|+..+.
T Consensus 333 v~ain~~~~P~~~s~~~~~a~~~~~~a~~~A~~~Y~~~-----m~~~~~~~~p~~~~~~L~~~h~~~~~~al~~F~~~~~ 407 (447)
T 3q5d_A 333 IKIYQGEELPHPKSMLQATAEANNLAAVATAKDTYNKK-----MEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKK 407 (447)
T ss_dssp HHHHHHSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHCSSSSCCCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999998653 333332 122 346999999999999999999996
Q ss_pred cccHHHHHHHHHHHHHHHHHhhHHH
Q 005138 345 YFDEGVRSAKRKQLEDKLLQLVQPA 369 (712)
Q Consensus 345 ~y~~~V~~~kr~~L~~~~~~~l~~~ 369 (712)
.+.+.++++.+++|+++|...+..+
T Consensus 408 ~g~~~~~~~~~~~L~~~l~~~~~~~ 432 (447)
T 3q5d_A 408 MGGEEFSRRYLQQLESEIDELYIQY 432 (447)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 6689999999999999988775544
No 50
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.83 E-value=3.2e-21 Score=222.84 Aligned_cols=162 Identities=17% Similarity=0.087 Sum_probs=119.4
Q ss_pred cEEE--------Eeeeeeeccc--cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeee--
Q 005138 9 STQL--------IDGDGTFNVS--GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ-- 76 (712)
Q Consensus 9 ~I~l--------~~l~k~y~~~--~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~-- 76 (712)
+|++ .|+++.|+.. ++.+++ .+..|+ +++|+||||||||||||+|+|+. +|++|+..
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge------~~~LiG~NGsGKSTLlkiL~Gll----~p~~G~~~~~ 151 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGM------VVGIVGPNGTGKTTAVKILAGQL----IPNLCEDNDS 151 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTS------EEEEECCTTSSHHHHHHHHTTSS----CCCTTTTCCC
T ss_pred eEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCC------EEEEECCCCChHHHHHHHHhCCC----CCCCCccccc
Confidence 5888 6778888532 688888 888888 99999999999999999999999 89999831
Q ss_pred ------ccCCeeec--------c--ccCC--C-----ccc---hh----------------ccccCCCcc--cccchhhH
Q 005138 77 ------TTKGIWMA--------R--CAGI--E-----PCT---LI----------------MDLEGTDGR--ERGEDDTA 112 (712)
Q Consensus 77 ------~t~gi~~~--------~--~~~~--~-----~~~---~v----------------~d~~g~~~~--~r~~~~~~ 112 (712)
.-.|..+. . ..++ . +.. .+ ++..|+... ......+.
T Consensus 152 ~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSG 231 (607)
T 3bk7_A 152 WDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSG 231 (607)
T ss_dssp HHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCH
T ss_pred cchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCH
Confidence 01111000 0 0000 0 000 00 111122211 11233466
Q ss_pred HHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceec
Q 005138 113 FEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (712)
Q Consensus 113 ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~ 188 (712)
.|+||++||+|++ ++|||||||++||+.. +..++++++++.+. |+|||+||||++.+...|++++++.+
T Consensus 232 GekQRvaIAraL~~~P~lLlLDEPTs~LD~~~------~~~l~~~L~~l~~~-g~tvIivsHdl~~~~~~adri~vl~~ 303 (607)
T 3bk7_A 232 GELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ------RLKVARVIRRLANE-GKAVLVVEHDLAVLDYLSDVIHVVYG 303 (607)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEECTTTTCCHHH------HHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEES
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHH------HHHHHHHHHHHHhc-CCEEEEEecChHHHHhhCCEEEEECC
Confidence 7999999999999 9999999999999998 99999999999764 99999999999988888999988865
No 51
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.83 E-value=3.3e-21 Score=240.58 Aligned_cols=176 Identities=18% Similarity=0.147 Sum_probs=135.6
Q ss_pred cEEEEeeeeeecc----ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC----
Q 005138 9 STQLIDGDGTFNV----SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG---- 80 (712)
Q Consensus 9 ~I~l~~l~k~y~~----~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g---- 80 (712)
.|+++|++.+|+. .+|++++++|++|+ .|||+||+|||||||+++|+|+. +|++|++...+-
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge------~vaIVG~SGsGKSTL~~lL~rl~----~p~~G~I~iDG~di~~ 1145 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQ------TLALVGPSGCGKSTVVALLERFY----DTLGGEIFIDGSEIKT 1145 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEECTTC------EEEEECSTTSSTTSHHHHHTTSS----CCSSSEEEETTEETTT
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEECCCC------EEEEECCCCChHHHHHHHHhcCc----cCCCCEEEECCEEhhh
Confidence 5999999999942 47999999999999 99999999999999999999999 999999543220
Q ss_pred e---eeccccCC-------------Cccchhccc-------------------------cCCCc--ccccchhhHHHHHH
Q 005138 81 I---WMARCAGI-------------EPCTLIMDL-------------------------EGTDG--RERGEDDTAFEKQS 117 (712)
Q Consensus 81 i---~~~~~~~~-------------~~~~~v~d~-------------------------~g~~~--~~r~~~~~~ferQr 117 (712)
+ +++..+++ +|..+..|. .|++. .+++...+.+||||
T Consensus 1146 i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQr 1225 (1321)
T 4f4c_A 1146 LNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQR 1225 (1321)
T ss_dssp BCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHH
T ss_pred CCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHH
Confidence 0 01111110 111110110 12211 13334456779999
Q ss_pred HHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEE
Q 005138 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (712)
Q Consensus 118 v~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~ 194 (712)
++||||+. +||||||||++||+++ -+.|.+.++++++ |+|+|+|+|.++.+.. ||++++|++ |+|++
T Consensus 1226 iaiARAllr~~~ILiLDEaTSaLD~~t------E~~Iq~~l~~~~~--~~TvI~IAHRLsTi~~-aD~I~Vld~-G~IvE 1295 (1321)
T 4f4c_A 1226 IAIARALVRNPKILLLDEATSALDTES------EKVVQEALDRARE--GRTCIVIAHRLNTVMN-ADCIAVVSN-GTIIE 1295 (1321)
T ss_dssp HHHHHHHHSCCSEEEEESCCCSTTSHH------HHHHHHHHTTTSS--SSEEEEECSSSSTTTT-CSEEEEESS-SSEEE
T ss_pred HHHHHHHHhCCCEEEEeCccccCCHHH------HHHHHHHHHHHcC--CCEEEEeccCHHHHHh-CCEEEEEEC-CEEEE
Confidence 99999999 9999999999999998 8888888888764 7999999999987764 899999988 99999
Q ss_pred ecCcccccCC
Q 005138 195 SVPKPQAHME 204 (712)
Q Consensus 195 ~g~~~e~~~~ 204 (712)
.|++.++++.
T Consensus 1296 ~Gth~eLl~~ 1305 (1321)
T 4f4c_A 1296 KGTHTQLMSE 1305 (1321)
T ss_dssp EECHHHHHHC
T ss_pred ECCHHHHHhC
Confidence 9999888754
No 52
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.83 E-value=1.2e-20 Score=234.88 Aligned_cols=176 Identities=19% Similarity=0.187 Sum_probs=133.9
Q ss_pred cEEEEeeeeeecc----ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-e--
Q 005138 9 STQLIDGDGTFNV----SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-I-- 81 (712)
Q Consensus 9 ~I~l~~l~k~y~~----~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i-- 81 (712)
.|++.|+++.|+. .+|+++++++..|+ ++||+||||||||||+++|+|+. +|++|++...+. +
T Consensus 1030 ~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge------~v~ivG~sGsGKSTl~~~l~g~~----~p~~G~I~i~g~~i~~ 1099 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQ------TLALVGSSGCGKSTVVQLLERFY----DPMAGSVFLDGKEIKQ 1099 (1284)
T ss_dssp CEEEEEEEBCCSCGGGCCSBSSCCEEECSSS------EEEEECSSSTTHHHHHHHHTTSS----CCSEEEEESSSSCTTS
T ss_pred cEEEEEEEEECCCCCCCeeecceeEEEcCCC------EEEEECCCCCCHHHHHHHHhcCc----CCCCCEEEECCEEccc
Confidence 5999999999942 37999999999999 99999999999999999999999 899998543321 0
Q ss_pred ----eeccccCC---Ccc---chhcccc----------------------------CCC------cccccchhhHHHHHH
Q 005138 82 ----WMARCAGI---EPC---TLIMDLE----------------------------GTD------GRERGEDDTAFEKQS 117 (712)
Q Consensus 82 ----~~~~~~~~---~~~---~~v~d~~----------------------------g~~------~~~r~~~~~~ferQr 117 (712)
.++..+++ ++. ..+.++. .++ -.+++...+.+||||
T Consensus 1100 ~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qr 1179 (1284)
T 3g5u_A 1100 LNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQR 1179 (1284)
T ss_dssp SCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHH
T ss_pred CCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHH
Confidence 00111110 000 0000000 000 012233456779999
Q ss_pred HHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEE
Q 005138 118 ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWD 194 (712)
Q Consensus 118 v~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~ 194 (712)
+++|+|++ ++|||||||++||+.. .+.+.+.+.++. .|+|+|+|+||++.+.. ||+++++.+ |+|+.
T Consensus 1180 v~iARal~~~p~iLiLDEpTs~lD~~~------~~~i~~~l~~~~--~~~tvi~isH~l~~i~~-~dri~vl~~-G~i~~ 1249 (1284)
T 3g5u_A 1180 IAIARALVRQPHILLLDEATSALDTES------EKVVQEALDKAR--EGRTCIVIAHRLSTIQN-ADLIVVIQN-GKVKE 1249 (1284)
T ss_dssp HHHHHHHHHCCSSEEEESCSSSCCHHH------HHHHHHHHHHHS--SSSCEEEECSCTTGGGS-CSEEEEEET-BEEEE
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHH------HHHHHHHHHHhC--CCCEEEEEecCHHHHHc-CCEEEEEEC-CEEEE
Confidence 99999999 9999999999999998 888999998764 38999999999998764 999999998 99999
Q ss_pred ecCcccccCC
Q 005138 195 SVPKPQAHME 204 (712)
Q Consensus 195 ~g~~~e~~~~ 204 (712)
.|++++.++.
T Consensus 1250 ~g~~~~l~~~ 1259 (1284)
T 3g5u_A 1250 HGTHQQLLAQ 1259 (1284)
T ss_dssp EECHHHHHHS
T ss_pred ECCHHHHHhC
Confidence 9998876643
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.82 E-value=5.7e-21 Score=218.21 Aligned_cols=161 Identities=17% Similarity=0.082 Sum_probs=117.2
Q ss_pred EEE-Eeeeeeeccc--cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeee--------cc
Q 005138 10 TQL-IDGDGTFNVS--GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ--------TT 78 (712)
Q Consensus 10 I~l-~~l~k~y~~~--~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~--------~t 78 (712)
.++ .|+++.|+.. ++.+++ ++..|+ +++|+||||||||||||+|+|+. +|++|+.. .-
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge------~~~LvG~NGaGKSTLlk~l~Gl~----~p~~G~~~~~~~~~~~~~ 89 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGM------VVGIVGPNGTGKSTAVKILAGQL----IPNLCGDNDSWDGVIRAF 89 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTS------EEEEECCTTSSHHHHHHHHHTSS----CCCTTTTCCSHHHHHHHT
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCCccCcchhhhHHhh
Confidence 455 5899999642 688898 889999 99999999999999999999998 89999831 01
Q ss_pred CCeeec--------c--ccCC-------Cccc---h----------------hccccCCCc--ccccchhhHHHHHHHHH
Q 005138 79 KGIWMA--------R--CAGI-------EPCT---L----------------IMDLEGTDG--RERGEDDTAFEKQSALF 120 (712)
Q Consensus 79 ~gi~~~--------~--~~~~-------~~~~---~----------------v~d~~g~~~--~~r~~~~~~ferQrv~~ 120 (712)
.|..+. . ..++ .+.. . +++..|+.. .......+..||||++|
T Consensus 90 ~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~i 169 (538)
T 1yqt_A 90 RGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAI 169 (538)
T ss_dssp TTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHH
Confidence 110000 0 0000 0000 0 011112211 11223446679999999
Q ss_pred HHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceec
Q 005138 121 ALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (712)
Q Consensus 121 A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~ 188 (712)
|+|++ ++|||||||++||+.. ...+++.+.++.+. |+|||+||||++++...|++++++.+
T Consensus 170 AraL~~~P~lLlLDEPTs~LD~~~------~~~l~~~L~~l~~~-g~tvi~vsHd~~~~~~~~dri~vl~~ 233 (538)
T 1yqt_A 170 AAALLRNATFYFFDEPSSYLDIRQ------RLNAARAIRRLSEE-GKSVLVVEHDLAVLDYLSDIIHVVYG 233 (538)
T ss_dssp HHHHHSCCSEEEEESTTTTCCHHH------HHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHhcCCCEEEEECCcccCCHHH------HHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence 99999 9999999999999998 99999999999764 99999999999999888999988865
No 54
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.82 E-value=4.3e-21 Score=229.87 Aligned_cols=78 Identities=10% Similarity=0.077 Sum_probs=66.2
Q ss_pred hhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccc
Q 005138 109 DDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVL 185 (712)
Q Consensus 109 ~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~l 185 (712)
..+.+||||++||++++ ++|||||||++||+.. ...+.+.+.++ +.|||+||||++++...|+++++
T Consensus 901 ~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s------~~~L~~~L~~~----g~tVIiISHD~e~v~~l~DrViv 970 (986)
T 2iw3_A 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS------LGALSKALKEF----EGGVIIITHSAEFTKNLTEEVWA 970 (986)
T ss_dssp GCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHH------HHHHHHHHHSC----SSEEEEECSCHHHHTTTCCEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHH------HHHHHHHHHHh----CCEEEEEECCHHHHHHhCCEEEE
Confidence 34566999999999999 9999999999999988 78888777654 56999999999999888999999
Q ss_pred eecCCeEEEecC
Q 005138 186 REDIQKIWDSVP 197 (712)
Q Consensus 186 l~~~G~I~~~g~ 197 (712)
+.+ |+++..|+
T Consensus 971 L~~-G~Iv~~G~ 981 (986)
T 2iw3_A 971 VKD-GRMTPSGH 981 (986)
T ss_dssp CBT-TBCCC---
T ss_pred EEC-CEEEEeCC
Confidence 988 99987664
No 55
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.81 E-value=1.2e-20 Score=234.89 Aligned_cols=176 Identities=15% Similarity=0.067 Sum_probs=133.5
Q ss_pred cEEEEeeeeeecc----ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC----
Q 005138 9 STQLIDGDGTFNV----SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG---- 80 (712)
Q Consensus 9 ~I~l~~l~k~y~~----~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g---- 80 (712)
.|++.|+++.|+. .+|++++++++.|+ +++|+||||||||||+++|+|+. +|++|++...+.
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~------~~~ivG~sGsGKSTl~~ll~g~~----~~~~G~i~i~g~~i~~ 456 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQ------TVALVGNSGCGKSTTVQLMQRLY----DPLDGMVSIDGQDIRT 456 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEEEEEEECTTC------EEEEECCSSSSHHHHHHHTTTSS----CCSEEEEEETTEEGGG
T ss_pred eEEEEEEEEEcCCCCCCcceecceEEEcCCC------EEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEEHHh
Confidence 5999999999952 47999999999999 99999999999999999999999 899998543321
Q ss_pred ---------e-eeccccCCC------ccchhc----------------------cc-cCC--CcccccchhhHHHHHHHH
Q 005138 81 ---------I-WMARCAGIE------PCTLIM----------------------DL-EGT--DGRERGEDDTAFEKQSAL 119 (712)
Q Consensus 81 ---------i-~~~~~~~~~------~~~~v~----------------------d~-~g~--~~~~r~~~~~~ferQrv~ 119 (712)
+ ++.+..... |..+.. .. .|. ...+++...+..||||++
T Consensus 457 ~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~Qria 536 (1284)
T 3g5u_A 457 INVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIA 536 (1284)
T ss_dssp SCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHH
T ss_pred CCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHH
Confidence 0 011110000 000000 00 010 011233345677999999
Q ss_pred HHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEec
Q 005138 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 120 ~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g 196 (712)
||||+. ++|||||||++||+.. .+.+.+.+..+.+ |+|+|+|+|+++.+.. ||+++++++ |+|+..|
T Consensus 537 iARal~~~p~iliLDEpts~LD~~~------~~~i~~~l~~~~~--~~t~i~itH~l~~i~~-~d~i~vl~~-G~i~~~g 606 (1284)
T 3g5u_A 537 IARALVRNPKILLLDEATSALDTES------EAVVQAALDKARE--GRTTIVIAHRLSTVRN-ADVIAGFDG-GVIVEQG 606 (1284)
T ss_dssp HHHHHHHCCSEEEEESTTCSSCHHH------HHHHHHHHHHHHT--TSEEEEECSCHHHHTT-CSEEEECSS-SCCCCEE
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHH------HHHHHHHHHHHcC--CCEEEEEecCHHHHHc-CCEEEEEEC-CEEEEEC
Confidence 999999 9999999999999998 7888888877653 8999999999988765 999999988 9999999
Q ss_pred CcccccCC
Q 005138 197 PKPQAHME 204 (712)
Q Consensus 197 ~~~e~~~~ 204 (712)
++.+.+..
T Consensus 607 ~~~~l~~~ 614 (1284)
T 3g5u_A 607 NHDELMRE 614 (1284)
T ss_dssp CHHHHHHT
T ss_pred CHHHHHhC
Confidence 98877643
No 56
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.80 E-value=5.2e-20 Score=229.77 Aligned_cols=176 Identities=17% Similarity=0.194 Sum_probs=136.1
Q ss_pred cEEEEeeeeeec----cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC----
Q 005138 9 STQLIDGDGTFN----VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG---- 80 (712)
Q Consensus 9 ~I~l~~l~k~y~----~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g---- 80 (712)
.|+++|+++.|+ ..+|++++++++.|+ .++|+||+|||||||+++|.|.. +|++|++...+-
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~------~vaivG~sGsGKSTll~ll~~~~----~~~~G~I~idG~~i~~ 484 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQ------TVALVGSSGCGKSTIISLLLRYY----DVLKGKITIDGVDVRD 484 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECTTC------EEEEEECSSSCHHHHHHHHTTSS----CCSEEEEEETTEETTT
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecCCc------EEEEEecCCCcHHHHHHHhcccc----ccccCcccCCCccchh
Confidence 599999999994 246999999999999 99999999999999999999999 999998643320
Q ss_pred ---eeeccccCC-------------Cccch----------------------hccc-cCCC--cccccchhhHHHHHHHH
Q 005138 81 ---IWMARCAGI-------------EPCTL----------------------IMDL-EGTD--GRERGEDDTAFEKQSAL 119 (712)
Q Consensus 81 ---i~~~~~~~~-------------~~~~~----------------------v~d~-~g~~--~~~r~~~~~~ferQrv~ 119 (712)
.+++..+++ +|..+ +... .|.+ -.+++...+++||||++
T Consensus 485 ~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRia 564 (1321)
T 4f4c_A 485 INLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIA 564 (1321)
T ss_dssp SCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHH
T ss_pred ccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHH
Confidence 011111110 01100 0000 1111 12344455677999999
Q ss_pred HHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEec
Q 005138 120 FALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 120 ~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g 196 (712)
||||+. ++|||||||++||+.. .+.+.+.+.++.+ |+|+|+|+|++..+. .||+++++++ |+|+..|
T Consensus 565 iARAl~~~~~IliLDE~tSaLD~~t------e~~i~~~l~~~~~--~~T~iiiaHrls~i~-~aD~Iivl~~-G~ive~G 634 (1321)
T 4f4c_A 565 IARALVRNPKILLLDEATSALDAES------EGIVQQALDKAAK--GRTTIIIAHRLSTIR-NADLIISCKN-GQVVEVG 634 (1321)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCTTT------HHHHHHHHHHHHT--TSEEEEECSCTTTTT-TCSEEEEEET-TEEEEEE
T ss_pred HHHHHccCCCEEEEecccccCCHHH------HHHHHHHHHHHhC--CCEEEEEcccHHHHH-hCCEEEEeeC-CeeeccC
Confidence 999999 9999999999999998 8889999988864 899999999999776 4899999988 9999999
Q ss_pred CcccccCC
Q 005138 197 PKPQAHME 204 (712)
Q Consensus 197 ~~~e~~~~ 204 (712)
+.+++.+.
T Consensus 635 th~eL~~~ 642 (1321)
T 4f4c_A 635 DHRALMAQ 642 (1321)
T ss_dssp CHHHHHTT
T ss_pred CHHHHHHh
Confidence 99887654
No 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.2e-20 Score=215.62 Aligned_cols=164 Identities=15% Similarity=0.144 Sum_probs=113.6
Q ss_pred cEEEEeeeeeeccc----------cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeecc
Q 005138 9 STQLIDGDGTFNVS----------GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT 78 (712)
Q Consensus 9 ~I~l~~l~k~y~~~----------~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t 78 (712)
+|+++|+.+.|... .++.+. .+..|+ ++||+||||||||||||+|+|+. +|++|++...
T Consensus 69 ~i~i~nl~~~~~~~~~~~Y~~~~~~l~~l~-~~~~Ge------i~~LvGpNGaGKSTLLkiL~Gll----~P~~G~i~~~ 137 (608)
T 3j16_B 69 AIQIINLPTNLEAHVTHRYSANSFKLHRLP-TPRPGQ------VLGLVGTNGIGKSTALKILAGKQ----KPNLGRFDDP 137 (608)
T ss_dssp CEEEEEESSSSSTTEEEECSTTSCEEECCC-CCCTTS------EEEEECCTTSSHHHHHHHHHTSS----CCCTTTTCCS
T ss_pred ceEEecCChhhcCCeEEEECCCceeecCCC-CCCCCC------EEEEECCCCChHHHHHHHHhcCC----CCCCceEecc
Confidence 68898886555211 122222 345566 99999999999999999999999 8999985210
Q ss_pred ----------CCeeec--------ccc------CC-Cc--------cch------------------hccccCCCc--cc
Q 005138 79 ----------KGIWMA--------RCA------GI-EP--------CTL------------------IMDLEGTDG--RE 105 (712)
Q Consensus 79 ----------~gi~~~--------~~~------~~-~~--------~~~------------------v~d~~g~~~--~~ 105 (712)
.|..+. ... .+ .+ ... +++..|+.. ..
T Consensus 138 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~ 217 (608)
T 3j16_B 138 PEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKR 217 (608)
T ss_dssp SCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGS
T ss_pred cchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCC
Confidence 010000 000 00 00 000 001112211 11
Q ss_pred ccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccccc
Q 005138 106 RGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE 182 (712)
Q Consensus 106 r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~ 182 (712)
.....+..|+||++||+|++ ++|||||||++||+.. ...++++++++.++ |.|||+||||++++..+|++
T Consensus 218 ~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~------~~~l~~~l~~l~~~-g~tvi~vtHdl~~~~~~~dr 290 (608)
T 3j16_B 218 DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQ------RLNAAQIIRSLLAP-TKYVICVEHDLSVLDYLSDF 290 (608)
T ss_dssp CTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHH------HHHHHHHHHGGGTT-TCEEEEECSCHHHHHHHCSE
T ss_pred ChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHH------HHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCE
Confidence 12334556999999999999 9999999999999998 99999999999765 99999999999999889999
Q ss_pred ccceecCCe
Q 005138 183 PVLREDIQK 191 (712)
Q Consensus 183 ~~ll~~~G~ 191 (712)
++++.+ |.
T Consensus 291 v~vl~~-~~ 298 (608)
T 3j16_B 291 VCIIYG-VP 298 (608)
T ss_dssp EEEEES-CT
T ss_pred EEEEeC-Cc
Confidence 998876 54
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.78 E-value=1.1e-19 Score=207.39 Aligned_cols=157 Identities=13% Similarity=0.104 Sum_probs=108.3
Q ss_pred eeeeeecccccccccccc-ccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeecc----------CCee
Q 005138 14 DGDGTFNVSGIEHFIKEV-KLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT----------KGIW 82 (712)
Q Consensus 14 ~l~k~y~~~~L~~v~~~i-~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t----------~gi~ 82 (712)
+...+|+...++-+.+.+ ..|+ ++||+||||||||||||+|+|+. .|++|++... .|..
T Consensus 4 ~~~~~~~~~~f~l~~l~~~~~Ge------i~gLiGpNGaGKSTLlkiL~Gl~----~p~~G~i~~~~~~~~~~~~~~g~~ 73 (538)
T 3ozx_A 4 EVIHRYKVNGFKLFGLPTPKNNT------ILGVLGKNGVGKTTVLKILAGEI----IPNFGDPNSKVGKDEVLKRFRGKE 73 (538)
T ss_dssp CEEEESSTTSCEEECCCCCCTTE------EEEEECCTTSSHHHHHHHHTTSS----CCCTTCTTSCCCHHHHHHHHTTST
T ss_pred CCceecCCCceeecCCCCCCCCC------EEEEECCCCCcHHHHHHHHhcCC----CCCCCccccccchhhHHhhcCCee
Confidence 345677544444444443 2455 99999999999999999999999 8999975210 1100
Q ss_pred e--------------ccccCCCccc------h----------------hccccCCCc--ccccchhhHHHHHHHHHHHHH
Q 005138 83 M--------------ARCAGIEPCT------L----------------IMDLEGTDG--RERGEDDTAFEKQSALFALAV 124 (712)
Q Consensus 83 ~--------------~~~~~~~~~~------~----------------v~d~~g~~~--~~r~~~~~~ferQrv~~A~Al 124 (712)
+ .....+.... . +++..|+.. .......+..|+||++||+|+
T Consensus 74 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL 153 (538)
T 3ozx_A 74 IYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASL 153 (538)
T ss_dssp THHHHHHHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccchhhccchhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 0 0000000000 0 001111111 111233456699999999999
Q ss_pred H---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceec
Q 005138 125 S---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (712)
Q Consensus 125 a---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~ 188 (712)
+ ++|||||||++||+.. ...++++++++. + |+|||+||||++++...|++++++.+
T Consensus 154 ~~~p~illlDEPts~LD~~~------~~~l~~~l~~l~-~-g~tii~vsHdl~~~~~~~d~i~vl~~ 212 (538)
T 3ozx_A 154 LREADVYIFDQPSSYLDVRE------RMNMAKAIRELL-K-NKYVIVVDHDLIVLDYLTDLIHIIYG 212 (538)
T ss_dssp HSCCSEEEEESTTTTCCHHH------HHHHHHHHHHHC-T-TSEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HcCCCEEEEECCcccCCHHH------HHHHHHHHHHHh-C-CCEEEEEEeChHHHHhhCCEEEEecC
Confidence 9 9999999999999998 999999999985 3 89999999999999888999888865
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.78 E-value=9.9e-20 Score=213.26 Aligned_cols=87 Identities=9% Similarity=0.053 Sum_probs=76.4
Q ss_pred chhhHHHHHHHHHHHHHH------HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccc
Q 005138 108 EDDTAFEKQSALFALAVS------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENL 181 (712)
Q Consensus 108 ~~~~~ferQrv~~A~Ala------~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~ 181 (712)
...+..||||++||+||+ ++||+||||++||+.. ...+++++.++.++ |.|||+||||++.+. .||
T Consensus 542 ~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~------~~~i~~~l~~l~~~-g~tvi~vtHd~~~~~-~~d 613 (670)
T 3ux8_A 542 TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDD------IARLLDVLHRLVDN-GDTVLVIEHNLDVIK-TAD 613 (670)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHH------HHHHHHHHHHHHHT-TCEEEEECCCHHHHT-TCS
T ss_pred hhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHH------HHHHHHHHHHHHHC-CCEEEEEeCCHHHHH-hCC
Confidence 445677999999999998 2999999999999998 99999999999765 999999999998775 599
Q ss_pred cccce------ecCCeEEEecCcccccC
Q 005138 182 EPVLR------EDIQKIWDSVPKPQAHM 203 (712)
Q Consensus 182 ~~~ll------~~~G~I~~~g~~~e~~~ 203 (712)
++++| .+ |+|+..|++.++..
T Consensus 614 ~i~~l~~~~g~~~-G~i~~~g~~~~~~~ 640 (670)
T 3ux8_A 614 YIIDLGPEGGDRG-GQIVAVGTPEEVAE 640 (670)
T ss_dssp EEEEEESSSGGGC-CEEEEEECHHHHHT
T ss_pred EEEEecCCcCCCC-CEEEEecCHHHHHh
Confidence 99988 56 99999999877643
No 60
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.77 E-value=3.8e-19 Score=213.11 Aligned_cols=172 Identities=13% Similarity=0.007 Sum_probs=123.8
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-eeeccc
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IWMARC 86 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~~~~~ 86 (712)
.|...|+++.|+ ..+|++++|++..|+ +++|+||||||||||||+|+|-.....++ .++ .+ .++...
T Consensus 435 ~L~~~~ls~~yg~~~iL~~vsl~I~~Ge------~v~LiGpNGsGKSTLLk~LagG~i~g~~~-~~~----~~~~~v~q~ 503 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKTQLRLKRAR------RYGICGPNGCGKSTLMRAIANGQVDGFPT-QEE----CRTVYVEHD 503 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTC------EEEEECSTTSSHHHHHHHHHHTCSTTCCC-TTT----SCEEETTCC
T ss_pred eeEEeeEEEEECCEEeEecceEEEcCCC------EEEEECCCCCCHHHHHHHHhCCCcCCCcc-ccc----eeEEEEccc
Confidence 477779999995 457999999999999 99999999999999999999522100000 010 01 111111
Q ss_pred c-CCCccch------------------hccccCCCc---ccccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhh
Q 005138 87 A-GIEPCTL------------------IMDLEGTDG---RERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQ 141 (712)
Q Consensus 87 ~-~~~~~~~------------------v~d~~g~~~---~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~ 141 (712)
. ...+... +++..|+.. .......+.+||||++||+|++ ++|||||||++||+..
T Consensus 504 ~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~ 583 (986)
T 2iw3_A 504 IDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVN 583 (986)
T ss_dssp CCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHH
T ss_pred ccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHH
Confidence 0 0000000 122234421 1122345677999999999999 9999999999999998
Q ss_pred hhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEE-EecCccccc
Q 005138 142 AANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW-DSVPKPQAH 202 (712)
Q Consensus 142 ~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~-~~g~~~e~~ 202 (712)
+..+.+.+.+ .|.|+|+||||++++...|++++++.+ |+++ ..|++.+..
T Consensus 584 ------~~~l~~~L~~----~g~tvIivSHdl~~l~~~adrii~L~~-G~iv~~~G~~~e~~ 634 (986)
T 2iw3_A 584 ------VAWLVNYLNT----CGITSITISHDSVFLDNVCEYIINYEG-LKLRKYKGNFTEFV 634 (986)
T ss_dssp ------HHHHHHHHHH----SCSEEEEECSCHHHHHHHCSEEEEEET-TEEEEEESCHHHHH
T ss_pred ------HHHHHHHHHh----CCCEEEEEECCHHHHHHhCCEEEEEEC-CeeecCCCCHHHHH
Confidence 9999999887 389999999999999889999999988 9996 578766544
No 61
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.71 E-value=4.8e-19 Score=198.39 Aligned_cols=165 Identities=12% Similarity=0.073 Sum_probs=114.5
Q ss_pred ccEEEEeeeeeeccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCC-e-eeccC----Ce
Q 005138 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKG-R-SQTTK----GI 81 (712)
Q Consensus 8 ~~I~l~~l~k~y~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG-~-~~~t~----gi 81 (712)
+|+++.|+++.|+ ++++++..|+ +++|+||||||||||+|+|+|+. .|++| + +...+ ++
T Consensus 117 ~mi~~~nl~~~y~-----~vsl~i~~Ge------~v~IvGpnGsGKSTLlr~L~Gl~----~p~~G~~pI~vdg~~~~~i 181 (460)
T 2npi_A 117 TMKYIYNLHFMLE-----KIRMSNFEGP------RVVIVGGSQTGKTSLSRTLCSYA----LKFNAYQPLYINLDPQQPI 181 (460)
T ss_dssp THHHHHHHHHHHH-----HHHHHSSSCC------CEEEEESTTSSHHHHHHHHHHTT----HHHHCCCCEEEECCTTSCS
T ss_pred chhhhhhhhehhh-----cCceEeCCCC------EEEEECCCCCCHHHHHHHHhCcc----cccCCceeEEEcCCccCCe
Confidence 4577778877773 6888988888 99999999999999999999998 78888 6 43211 11
Q ss_pred -eecccc----------CCCccchh----------------ccccCCCcccccchhhHHHHHHHHHHHH--HH---HH--
Q 005138 82 -WMARCA----------GIEPCTLI----------------MDLEGTDGRERGEDDTAFEKQSALFALA--VS---DI-- 127 (712)
Q Consensus 82 -~~~~~~----------~~~~~~~v----------------~d~~g~~~~~r~~~~~~ferQrv~~A~A--la---~i-- 127 (712)
.+.+.. ..++. +. ++..|+.........+..|+||+++|+| ++ ++
T Consensus 182 ~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~ 260 (460)
T 2npi_A 182 FTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRR 260 (460)
T ss_dssp SSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred eeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCc
Confidence 010100 00010 10 1111222211123445679999999999 98 99
Q ss_pred --hhhcc-ccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCC------Cccccccc-----cccee-cCCeE
Q 005138 128 --VLINM-WCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKT------RTPLENLE-----PVLRE-DIQKI 192 (712)
Q Consensus 128 --LlLDE-P~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~------~~~~~~~~-----~~ll~-~~G~I 192 (712)
||||| ||++||+. ...+.+++.+ .+.|+|+|+||+. ++..+|++ ++++. + |++
T Consensus 261 sGLlLDEpPts~LD~~-------~~~l~~l~~~----~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~-G~i 328 (460)
T 2npi_A 261 SGCIVDTPSISQLDEN-------LAELHHIIEK----LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKL-DGV 328 (460)
T ss_dssp SCEEEECCCGGGSCSS-------CHHHHHHHHH----TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCC-TTC
T ss_pred ceEEEeCCcccccChh-------HHHHHHHHHH----hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCC-CcE
Confidence 99999 99999986 3444444444 3778999999998 66678888 88887 6 999
Q ss_pred EEecCcccc
Q 005138 193 WDSVPKPQA 201 (712)
Q Consensus 193 ~~~g~~~e~ 201 (712)
+ .+++.+.
T Consensus 329 v-~g~~~~~ 336 (460)
T 2npi_A 329 S-AVDDVYK 336 (460)
T ss_dssp C-CCCHHHH
T ss_pred E-ECCHHHH
Confidence 8 8876543
No 62
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.71 E-value=2.5e-19 Score=174.28 Aligned_cols=134 Identities=11% Similarity=0.040 Sum_probs=88.1
Q ss_pred ccccccccccccccccEEEEEcCCCCChhHHHH------------HHhccccCccCCCCCeeeccCCeee-----ccccC
Q 005138 26 HFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLN------------HLFGTNFREMDAFKGRSQTTKGIWM-----ARCAG 88 (712)
Q Consensus 26 ~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn------------~L~Gl~f~~m~p~sG~~~~t~gi~~-----~~~~~ 88 (712)
++++++..|+ +++|+||||||||||+| .+.|.. .++.|.....+..+- .....
T Consensus 1 ~vsl~i~~ge------i~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (171)
T 4gp7_A 1 SMKLTIPELS------LVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLM----SDDENDQTVTGAAFDVLHYIVSKRL 70 (171)
T ss_dssp CEEEEEESSE------EEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHH----CSSTTCGGGHHHHHHHHHHHHHHHH
T ss_pred CccccCCCCE------EEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHh----cCcccchhhHHHHHHHHHHHHHHHH
Confidence 4788888888 99999999999999999 666666 344444211110000 00000
Q ss_pred CCccchhccccCCCcccccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhC----------hhhHHHHHHHH
Q 005138 89 IEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAAN----------KPLLKTVFQVM 155 (712)
Q Consensus 89 ~~~~~~v~d~~g~~~~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~----------~~l~~~v~e~l 155 (712)
......+.|. .......++||+++|++++ ++|++||||++||+....- ......+.+.+
T Consensus 71 ~~g~~~~~~~--------~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l 142 (171)
T 4gp7_A 71 QLGKLTVVDA--------TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSI 142 (171)
T ss_dssp HTTCCEEEES--------CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHS
T ss_pred hCCCeEEEEC--------CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhh
Confidence 0000011111 1122567999999999999 9999999999999983100 00157777777
Q ss_pred HHhhCCCCceEEEEecCCCCccc
Q 005138 156 MRLFSPRKTTLMFVIRDKTRTPL 178 (712)
Q Consensus 156 ~~L~~~~g~tiL~VtHDl~~~~~ 178 (712)
.++.++ |.|+|+||||++++..
T Consensus 143 ~~l~~~-g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 143 KGLQRE-GFRYVYILNSPEEVEE 164 (171)
T ss_dssp TTHHHH-TCSEEEEECSHHHHHH
T ss_pred hhHHhc-CCcEEEEeCCHHHhhh
Confidence 777665 9999999999987653
No 63
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.70 E-value=6.8e-18 Score=201.98 Aligned_cols=87 Identities=11% Similarity=0.056 Sum_probs=76.9
Q ss_pred hhhHHHHHHHHHHHHHH------HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccccc
Q 005138 109 DDTAFEKQSALFALAVS------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE 182 (712)
Q Consensus 109 ~~~~ferQrv~~A~Ala------~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~ 182 (712)
..+..|+||+.||++|+ ++|||||||+|||+.. ...+++++.++.+. |.|||+|+||++.+.. ||+
T Consensus 805 ~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~------~~~L~~lL~~L~~~-G~TVIvI~HdL~~i~~-ADr 876 (916)
T 3pih_A 805 TLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFED------VRKLVEVLHRLVDR-GNTVIVIEHNLDVIKN-ADH 876 (916)
T ss_dssp TCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHH------HHHHHHHHHHHHHT-TCEEEEECCCHHHHTT-CSE
T ss_pred CCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHhc-CCEEEEEeCCHHHHHh-CCE
Confidence 34566999999999997 4999999999999998 99999999999765 9999999999988764 999
Q ss_pred ccce------ecCCeEEEecCcccccCC
Q 005138 183 PVLR------EDIQKIWDSVPKPQAHME 204 (712)
Q Consensus 183 ~~ll------~~~G~I~~~g~~~e~~~~ 204 (712)
+++| .+ |+|++.|++++++.+
T Consensus 877 IivLgp~gg~~~-G~Iv~~Gtpeel~~~ 903 (916)
T 3pih_A 877 IIDLGPEGGKEG-GYIVATGTPEEIAKN 903 (916)
T ss_dssp EEEEESSSGGGC-CEEEEEESHHHHHSC
T ss_pred EEEecCCCCCCC-CEEEEEcCHHHHHhC
Confidence 9988 55 999999999887654
No 64
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.69 E-value=5.8e-18 Score=201.02 Aligned_cols=88 Identities=8% Similarity=0.020 Sum_probs=76.2
Q ss_pred hhhHHHHHHHHHHHHHH------HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccccc
Q 005138 109 DDTAFEKQSALFALAVS------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE 182 (712)
Q Consensus 109 ~~~~ferQrv~~A~Ala------~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~ 182 (712)
..+..|+||+.||++|+ ++|||||||+|||+.. ...+++++.++.+. |.|||+||||++++ ..||+
T Consensus 730 ~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~------~~~l~~lL~~L~~~-G~tVIvisHdl~~i-~~aDr 801 (842)
T 2vf7_A 730 ELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPAD------VERLQRQLVKLVDA-GNTVIAVEHKMQVV-AASDW 801 (842)
T ss_dssp GCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHH------HHHHHHHHHHHHHT-TCEEEEECCCHHHH-TTCSE
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEcCCHHHH-HhCCE
Confidence 34556999999999998 3999999999999998 99999999999765 99999999999988 56999
Q ss_pred cccee-----cCCeEEEecCcccccCC
Q 005138 183 PVLRE-----DIQKIWDSVPKPQAHME 204 (712)
Q Consensus 183 ~~ll~-----~~G~I~~~g~~~e~~~~ 204 (712)
+++|. +.|+|+..|++++++..
T Consensus 802 ii~L~p~~g~~~G~Iv~~g~~~el~~~ 828 (842)
T 2vf7_A 802 VLDIGPGAGEDGGRLVAQGTPAEVAQA 828 (842)
T ss_dssp EEEECSSSGGGCCSEEEEECHHHHTTC
T ss_pred EEEECCCCCCCCCEEEEEcCHHHHHhC
Confidence 99883 33999999998776643
No 65
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.67 E-value=3.7e-17 Score=195.40 Aligned_cols=87 Identities=7% Similarity=0.010 Sum_probs=75.3
Q ss_pred hhhHHHHHHHHHHHHHH------HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccccc
Q 005138 109 DDTAFEKQSALFALAVS------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE 182 (712)
Q Consensus 109 ~~~~ferQrv~~A~Ala------~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~ 182 (712)
..+..|+||+.||++|+ ++|||||||+|||+.. ...+++++.++.+. |.|||+||||++++. .||+
T Consensus 863 ~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~------~~~l~~lL~~L~~~-G~TVIvisHdl~~i~-~aDr 934 (993)
T 2ygr_A 863 TLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDD------IRKLLNVINGLVDK-GNTVIVIEHNLDVIK-TSDW 934 (993)
T ss_dssp GSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHH------HHHHHHHHHHHHHT-TCEEEEECCCHHHHT-TCSE
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEcCCHHHHH-hCCE
Confidence 34556999999999998 5999999999999998 99999999999764 999999999998774 6999
Q ss_pred cccee-----cCCeEEEecCcccccC
Q 005138 183 PVLRE-----DIQKIWDSVPKPQAHM 203 (712)
Q Consensus 183 ~~ll~-----~~G~I~~~g~~~e~~~ 203 (712)
+++|. +.|+|+..|++.++..
T Consensus 935 IivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 935 IIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp EEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred EEEECCCcCCCCCEEEEecCHHHHHh
Confidence 99983 3499999999877653
No 66
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.67 E-value=4e-17 Score=194.46 Aligned_cols=87 Identities=9% Similarity=0.030 Sum_probs=75.6
Q ss_pred hhhHHHHHHHHHHHHHH------HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccccc
Q 005138 109 DDTAFEKQSALFALAVS------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE 182 (712)
Q Consensus 109 ~~~~ferQrv~~A~Ala------~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~ 182 (712)
..+..|+||+.||++|+ ++|||||||+|||+.. ...+++++.++.+. |.|||+||||++++. .||+
T Consensus 845 ~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~------~~~l~~lL~~L~~~-G~TVIvisHdl~~i~-~aDr 916 (972)
T 2r6f_A 845 TLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDD------IARLLDVLHRLVDN-GDTVLVIEHNLDVIK-TADY 916 (972)
T ss_dssp GCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHH------HHHHHHHHHHHHHT-TCEEEEECCCHHHHT-TCSE
T ss_pred hCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHhC-CCEEEEEcCCHHHHH-hCCE
Confidence 34566999999999998 5999999999999998 99999999999764 999999999998764 6999
Q ss_pred cccee-----cCCeEEEecCcccccC
Q 005138 183 PVLRE-----DIQKIWDSVPKPQAHM 203 (712)
Q Consensus 183 ~~ll~-----~~G~I~~~g~~~e~~~ 203 (712)
+++|. +.|+|+..|++.++..
T Consensus 917 IivL~p~gG~~~G~Iv~~g~~~el~~ 942 (972)
T 2r6f_A 917 IIDLGPEGGDRGGQIVAVGTPEEVAE 942 (972)
T ss_dssp EEEECSSSTTSCCSEEEEESHHHHHT
T ss_pred EEEEcCCCCCCCCEEEEecCHHHHHh
Confidence 99883 3499999999877654
No 67
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.59 E-value=6.7e-16 Score=169.88 Aligned_cols=78 Identities=15% Similarity=0.104 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHHHHHH-----HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccccccc
Q 005138 110 DTAFEKQSALFALAVS-----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPV 184 (712)
Q Consensus 110 ~~~ferQrv~~A~Ala-----~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ 184 (712)
.+.+|+||+++|++++ ++|||||||++||+.. ...+.+.+.++. + |.|||+||||++.+. .|++++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~------~~~l~~~L~~l~-~-~~~vi~itH~~~~~~-~~d~i~ 366 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAA------AIAVAEQLSRLA-D-TRQVLVVTHLAQIAA-RAHHHY 366 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHH------HHHHHHHHHHHT-T-TSEEEEECSCHHHHT-TCSEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHH------HHHHHHHHHHHh-C-CCEEEEEeCcHHHHh-hcCeEE
Confidence 4778999999999997 6899999999999998 999999999986 3 899999999997654 699999
Q ss_pred ce----ecCCeEEEecC
Q 005138 185 LR----EDIQKIWDSVP 197 (712)
Q Consensus 185 ll----~~~G~I~~~g~ 197 (712)
++ .+ |+++....
T Consensus 367 ~l~k~~~~-G~~~~~~~ 382 (415)
T 4aby_A 367 KVEKQVED-GRTVSHVR 382 (415)
T ss_dssp EEEEEEET-TEEEEEEE
T ss_pred EEEEeccC-CceEEEEE
Confidence 88 77 98876543
No 68
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.58 E-value=1.4e-15 Score=165.77 Aligned_cols=77 Identities=14% Similarity=0.128 Sum_probs=67.4
Q ss_pred hhhHHHHHHHHHHHHHH---------HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccc
Q 005138 109 DDTAFEKQSALFALAVS---------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE 179 (712)
Q Consensus 109 ~~~~ferQrv~~A~Ala---------~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~ 179 (712)
..+..|+||+++|+|++ ++|||||||++||+.. ...+++.+.++.+. |.|||+||||++. ...
T Consensus 279 ~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~------~~~~~~~l~~l~~~-g~tvi~itH~~~~-~~~ 350 (365)
T 3qf7_A 279 GLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTEN------KEKIASVLKELERL-NKVIVFITHDREF-SEA 350 (365)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHH------HHHHHHHHHGGGGS-SSEEEEEESCHHH-HTT
T ss_pred hCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHH------HHHHHHHHHHHHhC-CCEEEEEecchHH-HHh
Confidence 34567999999999998 7899999999999998 99999999999765 9999999999987 456
Q ss_pred cccccceecCCeEEE
Q 005138 180 NLEPVLREDIQKIWD 194 (712)
Q Consensus 180 ~~~~~ll~~~G~I~~ 194 (712)
|++++++.+ |+++.
T Consensus 351 ~d~~~~l~~-G~i~~ 364 (365)
T 3qf7_A 351 FDRKLRITG-GVVVN 364 (365)
T ss_dssp CSCEEEEET-TEEC-
T ss_pred CCEEEEEEC-CEEEe
Confidence 899998888 99864
No 69
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.57 E-value=7.4e-17 Score=162.46 Aligned_cols=122 Identities=16% Similarity=0.111 Sum_probs=77.1
Q ss_pred cccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee-----eccccCCCc------c-chh---
Q 005138 31 VKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW-----MARCAGIEP------C-TLI--- 95 (712)
Q Consensus 31 i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~-----~~~~~~~~~------~-~~v--- 95 (712)
+..|+ +++|+|||||||||||++|+|+. |++|++... .+. ....+++-+ . .+.
T Consensus 19 i~~Ge------~~~liG~nGsGKSTLl~~l~Gl~-----p~~G~I~~~-~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~ 86 (208)
T 3b85_A 19 IDTNT------IVFGLGPAGSGKTYLAMAKAVQA-----LQSKQVSRI-ILTRPAVEAGEKLGFLPGTLNEKIDPYLRPL 86 (208)
T ss_dssp HHHCS------EEEEECCTTSSTTHHHHHHHHHH-----HHTTSCSEE-EEEECSCCTTCCCCSSCC------CTTTHHH
T ss_pred ccCCC------EEEEECCCCCCHHHHHHHHhcCC-----CcCCeeeeE-EecCCchhhhcceEEecCCHHHHHHHHHHHH
Confidence 46777 99999999999999999999984 788885210 010 111122211 1 010
Q ss_pred cc-ccCCCcccccchh---hHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEE
Q 005138 96 MD-LEGTDGRERGEDD---TAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMF 168 (712)
Q Consensus 96 ~d-~~g~~~~~r~~~~---~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~ 168 (712)
.+ ..+.....+.... ...|+||+++|+|++ ++|||||||++ . ...+.+.+.++ + .|+|||
T Consensus 87 ~~~~~~~~~~~~~~~~l~~glGq~qrv~lAraL~~~p~lllLDEPts~----~------~~~l~~~l~~l-~-~g~tii- 153 (208)
T 3b85_A 87 HDALRDMVEPEVIPKLMEAGIVEVAPLAYMRGRTLNDAFVILDEAQNT----T------PAQMKMFLTRL-G-FGSKMV- 153 (208)
T ss_dssp HHHHTTTSCTTHHHHHHHTTSEEEEEGGGGTTCCBCSEEEEECSGGGC----C------HHHHHHHHTTB-C-TTCEEE-
T ss_pred HHHHHHhccHHHHHHHHHhCCchHHHHHHHHHHhcCCCEEEEeCCccc----c------HHHHHHHHHHh-c-CCCEEE-
Confidence 00 0010000000000 015999999999999 99999999998 4 78899999888 5 489999
Q ss_pred EecCCCCcc
Q 005138 169 VIRDKTRTP 177 (712)
Q Consensus 169 VtHDl~~~~ 177 (712)
||||++.+.
T Consensus 154 vtHd~~~~~ 162 (208)
T 3b85_A 154 VTGDITQVD 162 (208)
T ss_dssp EEEC-----
T ss_pred EECCHHHHh
Confidence 999998765
No 70
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.57 E-value=1.2e-15 Score=168.34 Aligned_cols=156 Identities=17% Similarity=0.137 Sum_probs=106.6
Q ss_pred eeeeccccccccccccccccc--------------cccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC--
Q 005138 16 DGTFNVSGIEHFIKEVKLSDC--------------GLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-- 79 (712)
Q Consensus 16 ~k~y~~~~L~~v~~~i~~ge~--------------g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~-- 79 (712)
.+.|...+++++++++..|+. -..+.+++|+||||||||||+|+|+|+. +|++|++...+
T Consensus 31 ~k~~~~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~----~p~~GsI~~~g~~ 106 (413)
T 1tq4_A 31 RKIISQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIG----NEEEGAAKTGVVE 106 (413)
T ss_dssp GCSSCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCC----TTSTTSCCCCC--
T ss_pred cccCCHHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCC----CccCceEEECCee
Confidence 344444568899999988760 0133489999999999999999999999 89999854322
Q ss_pred ----CeeeccccCCCccchhccccCCCccc-ccch---------------hhH--HHHHHHHHHHHHH------------
Q 005138 80 ----GIWMARCAGIEPCTLIMDLEGTDGRE-RGED---------------DTA--FEKQSALFALAVS------------ 125 (712)
Q Consensus 80 ----gi~~~~~~~~~~~~~v~d~~g~~~~~-r~~~---------------~~~--ferQrv~~A~Ala------------ 125 (712)
+..+.. ...+...+.|..|..... +... ... +|+||+.+|++++
T Consensus 107 ~t~~~~v~q~--~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tk 184 (413)
T 1tq4_A 107 VTMERHPYKH--PNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTK 184 (413)
T ss_dssp --CCCEEEEC--SSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECC
T ss_pred cceeEEeccc--cccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEec
Confidence 222221 112334455655542110 0000 011 2999999999997
Q ss_pred -HHhhhccccCCCchhhhhChhhHHHHHHHHHHhh-----CC---CCceEEEEecCCCC--cccccccc
Q 005138 126 -DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLF-----SP---RKTTLMFVIRDKTR--TPLENLEP 183 (712)
Q Consensus 126 -~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~-----~~---~g~tiL~VtHDl~~--~~~~~~~~ 183 (712)
+++++||||++||+.. ...+.+.++++. +. ...++++++|++.. +..+|+++
T Consensus 185 pdlllLDEPtsgLD~~~------~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 185 VDSDITNEADGEPQTFD------KEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHHHHTTCCTTCC------HHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred CcccccCcccccCCHHH------HHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 4999999999999998 888888888874 11 24678899999876 66666665
No 71
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=99.56 E-value=2.9e-12 Score=146.97 Aligned_cols=333 Identities=16% Similarity=0.186 Sum_probs=199.1
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccccCccCCCCCe-eeccCCeeeccc---cCCCccchhccccCCCcccccchhhHHH
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGR-SQTTKGIWMARC---AGIEPCTLIMDLEGTDGRERGEDDTAFE 114 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~-~~~t~gi~~~~~---~~~~~~~~v~d~~g~~~~~r~~~~~~fe 114 (712)
+..+|+|+|+.|+|||||+|.|+|..... +..|+ ..+|.|+|+... ......++++|+.|+....++......
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~- 113 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDS- 113 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHH-
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHH-
Confidence 44589999999999999999999986221 22222 246778875421 112345678899999876553221111
Q ss_pred HHHHHHHHHHHHHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCC------------------CceEEEEecCCCCc
Q 005138 115 KQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPR------------------KTTLMFVIRDKTRT 176 (712)
Q Consensus 115 rQrv~~A~Ala~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~------------------g~tiL~VtHDl~~~ 176 (712)
...+++..++.++|+|- +.+++... ......+.+..+.+..+. -..++++.+|...-
T Consensus 114 -~~fala~llss~lv~n~-~~~i~~~d---l~~l~~v~e~~~~l~~k~~~~~~~~~~~~~~~~~~~fP~~~wvvRD~~l~ 188 (592)
T 1f5n_A 114 -WIFALAVLLSSTFVYNS-IGTINQQA---MDQLYYVTELTHRIRSKSSPDENENEVEDSADFVSFFPDFVWTLRDFSLD 188 (592)
T ss_dssp -HHHHHHHHHCSEEEEEE-ESCSSHHH---HHTTHHHHTHHHHCBSCCC-------CCGGGGHHHHCCEEEEEEETCCCC
T ss_pred -HHHHHHHHhcCeEEEEC-CCCccHHH---HHHHHHHHHHhhhhhcccCcccccccccchhhhhccCCceEEEEecccch
Confidence 22234555558888883 34454432 222344444444443221 14788999999643
Q ss_pred ccccc-----cccceecCCeEEEecCcccccC----Cccchhhhc-ccccccccch--------------hhHHHHHHHH
Q 005138 177 PLENL-----EPVLREDIQKIWDSVPKPQAHM----ETPLSEFFN-VEVVALSSFE--------------EKEELFKEQV 232 (712)
Q Consensus 177 ~~~~~-----~~~ll~~~G~I~~~g~~~e~~~----~~~l~d~f~-~~~~~l~~~~--------------~~~~~f~~~v 232 (712)
..... +.++-..+. .. .|..+++.. ...+..+|. ...+.+||.. ...+.|.+++
T Consensus 189 ~~~~g~~~t~~eyLe~~L~-~~-~~~~~~~~~~n~~R~~I~~~F~~~~cf~lp~P~~~~~l~~L~~~~~~~L~peF~~~l 266 (592)
T 1f5n_A 189 LEADGQPLTPDEYLTYSLK-LK-KGTSQKDETFNLPRLCIRKFFPKKKCFVFDRPVHRRKLAQLEKLQDEELDPEFVQQV 266 (592)
T ss_dssp CCCSSSCCCHHHHHHHHTC-CC-CCCSHHHHHHHHHHHHHHHHCSCEEEEECCCCSCGGGGGGGGGSCGGGSCHHHHHHH
T ss_pred hccCCCCCCHHHHHHHHHh-hc-cCCChhhHhhhhHHHHHHHhCCCCcEEEeCCCCcHHHHhhhccCChhhCCHHHHHHH
Confidence 22110 111111100 00 122222211 123555663 3444555432 1246799999
Q ss_pred HHhhhhhccccCCCCCCCCCCCccccCC--cccchHHHHHHHHhcCCCCCchhhHHHHhhchHHHHHHHHHhhhhhhhHH
Q 005138 233 ASLRQRFYHSVAPGGLAGDRRGVVPASG--FSFSAHEIWKVIKENKDLDLPAHKVMVATVRCEEIANEKYSSFAANEEWC 310 (712)
Q Consensus 233 ~~L~~~f~~~~~~~~~~~~~~~~ip~~g--~~~~~~~~w~~I~~n~dldlp~q~~~~a~~rc~ei~~~~~~~~~~~~~~~ 310 (712)
..|+..+.....+..+. +.+|+.| |..++...|++|.++.-..+++.-.++|...|..+..+++..|...
T Consensus 267 ~~l~~~i~~~~~~K~~~----gg~~vtG~~L~~l~~~yv~ain~g~vP~~~s~~~a~a~~e~~~av~~A~~~Y~~~---- 338 (592)
T 1f5n_A 267 ADFCSYIFSNSKTKTLS----GGIQVNGPRLESLVLTYVNAISSGDLPCMENAVLALAQIENSAAVQKAIAHYEQQ---- 338 (592)
T ss_dssp HHHHHHHHHHCCCCEET----TTEECBHHHHHHHHHHHHHHHHHTSCCBHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHccccceeec----CCccccHHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 99999988654433221 2345555 9999999999999887777788888999999999999999988653
Q ss_pred HHHHHHhcCCc---chHHHHHHHHHHHHhhchhhhhccccHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHH
Q 005138 311 ELEAAVQSGPI---SSFGKKLSSILETCLSGYDGEVLYFDEGVRSAKRKQLEDKLLQLVQPAFQ---SMLGHIRSGTLDK 384 (712)
Q Consensus 311 ~~~~~~~~~~~---~~~~~~~~~~~~~~l~~yd~~a~~y~~~V~~~kr~~L~~~~~~~l~~~~~---~~l~~l~~~~~~~ 384 (712)
+.+.+ .-|. ..|-..-.....+|++.|...+.. .+.++-+.+|...|...+..+.. ..-...|..+++.
T Consensus 339 -M~~~~-~~P~~~~~eL~~~H~~~~~~Al~~F~~~~~~---d~~~~~~~~L~~~i~~~~~~~~~~N~~~s~~~C~~ll~~ 413 (592)
T 1f5n_A 339 -MGQKV-QLPTESLQELLDLHRDSEREAIEVFIRSSFK---DVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQV 413 (592)
T ss_dssp -HHHHC-CSSCSSHHHHHHHHHHHHHHHHHHHHHHCCC---CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHhhc-CCCCCCHHHHHHHHHHHHHHHHHHHHHhcch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223 2232 357777788899999999987643 23345556666666666544433 3333456666777
Q ss_pred HHHHHHHhhc
Q 005138 385 FKDAFDKALS 394 (712)
Q Consensus 385 f~~~l~~~~~ 394 (712)
+...+...++
T Consensus 414 l~~~l~~~i~ 423 (592)
T 1f5n_A 414 IFSPLEEEVK 423 (592)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666665554
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.49 E-value=1.3e-14 Score=142.35 Aligned_cols=134 Identities=13% Similarity=0.061 Sum_probs=80.3
Q ss_pred EEEEEcCCCCChhHHHHHHhccccCccCC-CCCeeec-cCCeeeccccCCCcc-----chhccccCCC----cccccchh
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNFREMDA-FKGRSQT-TKGIWMARCAGIEPC-----TLIMDLEGTD----GRERGEDD 110 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p-~sG~~~~-t~gi~~~~~~~~~~~-----~~v~d~~g~~----~~~r~~~~ 110 (712)
.++|+||||||||||+++|+|+. .. ..|.... .........+++... ..++...+.. ........
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l----~i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 77 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL----GKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNV 77 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----GGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----CCcCCCEEhhhhccccccceeEEEeecCcHHHHHHHhhcCCccccccccccCc
Confidence 68999999999999999999987 21 1121100 000000001111000 0000000111 11122345
Q ss_pred hHHHHHHHHHHHH-----HH---HHhhhcc--ccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEec---CCCCcc
Q 005138 111 TAFEKQSALFALA-----VS---DIVLINM--WCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIR---DKTRTP 177 (712)
Q Consensus 111 ~~ferQrv~~A~A-----la---~iLlLDE--P~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtH---Dl~~~~ 177 (712)
+.+|+||+.+|+| ++ +++|+|| |++++|+.. .+.+.+.+.+ .+.|+|+++| |+..+.
T Consensus 78 SgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~------~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~ 147 (178)
T 1ye8_A 78 QYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKF------RDLVRQIMHD----PNVNVVATIPIRDVHPLVK 147 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHH------HHHHHHHHTC----TTSEEEEECCSSCCSHHHH
T ss_pred CHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHH------HHHHHHHHhc----CCCeEEEEEccCCCchHHH
Confidence 7789999999996 77 8999999 999999987 6666666543 4778889986 555666
Q ss_pred cccccccceecCCeEEE
Q 005138 178 LENLEPVLREDIQKIWD 194 (712)
Q Consensus 178 ~~~~~~~ll~~~G~I~~ 194 (712)
.++++ .+ |+++.
T Consensus 148 ~i~~r----~~-~~i~~ 159 (178)
T 1ye8_A 148 EIRRL----PG-AVLIE 159 (178)
T ss_dssp HHHTC----TT-CEEEE
T ss_pred HHHhc----CC-cEEEE
Confidence 55554 33 77765
No 73
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.48 E-value=4.1e-14 Score=170.03 Aligned_cols=169 Identities=12% Similarity=0.001 Sum_probs=105.0
Q ss_pred cEEEEeeeeeec------cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee
Q 005138 9 STQLIDGDGTFN------VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW 82 (712)
Q Consensus 9 ~I~l~~l~k~y~------~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~ 82 (712)
.|.+.++..-+- ..++++++++++.|+ +++|+||||||||||||++.++.. -+..|...+..+..
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~------i~~ItGpNGsGKSTlLr~ial~~~---~aq~G~~vpa~~~~ 701 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQM------FHIITGPNMGGKSTYIRQTGVIVL---MAQIGCFVPCESAE 701 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBC------EEEEECCTTSSHHHHHHHHHHHHH---HHHHTCCBSEEEEE
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCe------EEEEECCCCCCHHHHHHHHHHHHH---HHhcCCcccccccc
Confidence 366666544331 125678888888888 999999999999999999943321 11122211111111
Q ss_pred eccccCCCccchhccccCCCcccccchhhHHHHHHHHHHHHH--H---HHhhhccccCCCchhhhhChhhHHHH-HHHHH
Q 005138 83 MARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAV--S---DIVLINMWCHDIGREQAANKPLLKTV-FQVMM 156 (712)
Q Consensus 83 ~~~~~~~~~~~~v~d~~g~~~~~r~~~~~~ferQrv~~A~Al--a---~iLlLDEP~~~LD~~~~a~~~l~~~v-~e~l~ 156 (712)
+. ... -++...|...... .....|+.++..+|.++ + +++|||||++|+|+.. ...+ ..++.
T Consensus 702 ~~----~~d--~i~~~ig~~d~l~-~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~------~~~i~~~il~ 768 (934)
T 3thx_A 702 VS----IVD--CILARVGAGDSQL-KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYD------GFGLAWAISE 768 (934)
T ss_dssp EE----CCS--EEEEECC----------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHH------HHHHHHHHHH
T ss_pred ch----HHH--HHHHhcCchhhHH-HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHH------HHHHHHHHHH
Confidence 10 000 0111222221111 12356677777777776 3 8999999999999986 5555 45555
Q ss_pred HhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccc
Q 005138 157 RLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (712)
Q Consensus 157 ~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~ 201 (712)
.+.++.|+++||+||+++.+. +++++..+.+ |++...+++.++
T Consensus 769 ~l~~~~g~~vl~aTH~~el~~-lad~~~~v~n-g~v~~~~~~~~l 811 (934)
T 3thx_A 769 YIATKIGAFCMFATHFHELTA-LANQIPTVNN-LHVTALTTEETL 811 (934)
T ss_dssp HHHHTTCCEEEEEESCGGGGG-GGGTCTTEEE-EEEEEEEETTEE
T ss_pred HHHhcCCCEEEEEcCcHHHHH-HhcccceeEe-eEEEEEecCCcE
Confidence 665445899999999987664 6888888888 999888776543
No 74
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.46 E-value=2.5e-14 Score=173.78 Aligned_cols=170 Identities=16% Similarity=0.050 Sum_probs=101.5
Q ss_pred ccEEEEe-----eeeee-c-cccccccccccccc-cccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC
Q 005138 8 CSTQLID-----GDGTF-N-VSGIEHFIKEVKLS-DCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK 79 (712)
Q Consensus 8 ~~I~l~~-----l~k~y-~-~~~L~~v~~~i~~g-e~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~ 79 (712)
.+|++.+ +++.| + ..+++++++++..+ ..+.+|++++|+||||||||||||+| |+.. .| ...|...+..
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~-~~-aqiG~~Vpq~ 825 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA-VM-AQMGCYVPAE 825 (1022)
T ss_dssp CCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH-HH-HTTTCCEESS
T ss_pred ceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH-HH-hheeEEeccC
Confidence 4699999 99888 3 34789999988751 00122349999999999999999999 9871 11 1223111111
Q ss_pred CeeeccccCCCccchhccccCCCccc-ccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHH
Q 005138 80 GIWMARCAGIEPCTLIMDLEGTDGRE-RGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVM 155 (712)
Q Consensus 80 gi~~~~~~~~~~~~~v~d~~g~~~~~-r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l 155 (712)
... .+....+ +...|..... .+......+.+++++|++++ +++|||||++|+|+..+ ...+..++
T Consensus 826 ~~~----l~v~d~I--~~rig~~d~~~~~~stf~~em~~~a~al~la~~~sLlLLDEp~~Gtd~~dg-----~~~~~~il 894 (1022)
T 2o8b_B 826 VCR----LTPIDRV--FTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDELGRGTATFDG-----TAIANAVV 894 (1022)
T ss_dssp EEE----ECCCSBE--EEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEECTTTTSCHHHH-----HHHHHHHH
T ss_pred cCC----CCHHHHH--HHHcCCHHHHhhchhhhHHHHHHHHHHHHhCCCCcEEEEECCCCCCChHHH-----HHHHHHHH
Confidence 100 0000111 1112222111 11111222555688888887 99999999999998751 23456777
Q ss_pred HHhhCCCCceEEEEecCCCCcccccccccceecCCeEE
Q 005138 156 MRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIW 193 (712)
Q Consensus 156 ~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~ 193 (712)
..+.+..|+++||+||+++.+...+++..++ + |++.
T Consensus 895 ~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~-g~~~ 930 (1022)
T 2o8b_B 895 KELAETIKCRTLFSTHYHSLVEDYSQNVAVR-L-GHMA 930 (1022)
T ss_dssp HHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-E-EEEE
T ss_pred HHHHhcCCCEEEEEeCCHHHHHHhCCcceee-c-CeEE
Confidence 7776545899999999999888778877665 4 7877
No 75
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.45 E-value=3.6e-15 Score=149.00 Aligned_cols=57 Identities=9% Similarity=-0.048 Sum_probs=47.1
Q ss_pred HHhhhccccCCCc----hhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceec
Q 005138 126 DIVLINMWCHDIG----REQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (712)
Q Consensus 126 ~iLlLDEP~~~LD----~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~ 188 (712)
+++++|||++++| +.. ++.+.+++.++.++.|.|+|+||||++++...|++++++..
T Consensus 143 ~~~~LDep~~~l~~~~d~~~------~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~~ 203 (207)
T 1znw_A 143 SWQDLQARLIGRGTETADVI------QRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGTA 203 (207)
T ss_dssp CHHHHHHHHHTTSCSCHHHH------HHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHhcCCCCHHHH------HHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhcc
Confidence 6899999999984 444 88899999998765689999999999999999999988754
No 76
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.44 E-value=2.5e-14 Score=145.30 Aligned_cols=60 Identities=7% Similarity=-0.026 Sum_probs=42.2
Q ss_pred HHhhhccccCCCchhhhhCh-hhHHHHHHHHHHhhCCCCceEEEEecCCCCc---------cccc-ccccceec
Q 005138 126 DIVLINMWCHDIGREQAANK-PLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT---------PLEN-LEPVLRED 188 (712)
Q Consensus 126 ~iLlLDEP~~~LD~~~~a~~-~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~---------~~~~-~~~~ll~~ 188 (712)
+++++|||++++|... ++ ...+.+.+++..+.+ .|+|+|+|||++..+ ...| |+++++..
T Consensus 137 ~~lilDep~~~ld~~~--d~~~~~~~l~~l~~~l~~-~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 137 KRLVIDSIPSIALRLE--EERKIREVLLKLNTILLE-MGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp SEEEEECHHHHHHHSS--SGGGHHHHHHHHHHHHHH-HCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred CEEEEccHHHHHhhcC--CHHHHHHHHHHHHHHHHH-CCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 8999999999987211 11 125557778877765 499999999999876 4667 88887753
No 77
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.44 E-value=1.5e-14 Score=155.45 Aligned_cols=128 Identities=10% Similarity=0.079 Sum_probs=90.8
Q ss_pred cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccccCCCcc-chhccccCC
Q 005138 23 GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPC-TLIMDLEGT 101 (712)
Q Consensus 23 ~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~~~~~~~-~~v~d~~g~ 101 (712)
+++++++.+..|+ +++|+||||||||||||+|.|+. +|++|.+...+...+... ...+. .++.
T Consensus 160 ~l~~l~~~i~~g~------~v~i~G~~GsGKTTll~~l~g~~----~~~~g~i~i~~~~e~~~~-~~~~~i~~~~----- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGK------NVIVCGGTGSGKTTYIKSIMEFI----PKEERIISIEDTEEIVFK-HHKNYTQLFF----- 223 (330)
T ss_dssp HHHHHHHHHHHTC------CEEEEESTTSCHHHHHHHGGGGS----CTTSCEEEEESSCCCCCS-SCSSEEEEEC-----
T ss_pred HHhhhhhhccCCC------EEEEECCCCCCHHHHHHHHhCCC----cCCCcEEEECCeeccccc-cchhEEEEEe-----
Confidence 4677888888888 99999999999999999999999 788787433221110000 00000 0000
Q ss_pred CcccccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccc
Q 005138 102 DGRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPL 178 (712)
Q Consensus 102 ~~~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~ 178 (712)
+ ..|+|++++|+|+. ++||+|||++ .+ +.+.+..+... +.|+|+++|+.+ +..
T Consensus 224 -----g----gg~~~r~~la~aL~~~p~ilildE~~~---~e----------~~~~l~~~~~g-~~tvi~t~H~~~-~~~ 279 (330)
T 2pt7_A 224 -----G----GNITSADCLKSCLRMRPDRIILGELRS---SE----------AYDFYNVLCSG-HKGTLTTLHAGS-SEE 279 (330)
T ss_dssp -----B----TTBCHHHHHHHHTTSCCSEEEECCCCS---TH----------HHHHHHHHHTT-CCCEEEEEECSS-HHH
T ss_pred -----C----CChhHHHHHHHHhhhCCCEEEEcCCCh---HH----------HHHHHHHHhcC-CCEEEEEEcccH-HHH
Confidence 0 45789999999998 9999999997 11 34555665432 568999999998 666
Q ss_pred ccccccceecCCe
Q 005138 179 ENLEPVLREDIQK 191 (712)
Q Consensus 179 ~~~~~~ll~~~G~ 191 (712)
.+++++++.+ |.
T Consensus 280 ~~dri~~l~~-g~ 291 (330)
T 2pt7_A 280 AFIRLANMSS-SN 291 (330)
T ss_dssp HHHHHHHHHH-TS
T ss_pred Hhhhheehhc-CC
Confidence 7889888877 64
No 78
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.41 E-value=2.7e-14 Score=154.47 Aligned_cols=166 Identities=14% Similarity=0.031 Sum_probs=110.9
Q ss_pred ccEEEEeeeeeec--cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC--eee
Q 005138 8 CSTQLIDGDGTFN--VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG--IWM 83 (712)
Q Consensus 8 ~~I~l~~l~k~y~--~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g--i~~ 83 (712)
+++++.++++.|. ..+++++ +.+..|+ +++|+|||||||||||++|+|+. .|+.|.+...+. ..+
T Consensus 44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq------~~gIiG~nGaGKTTLl~~I~g~~----~~~~g~i~~~G~~~~ev 112 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQ------RIGIFAGSGVGKSTLLGMICNGA----SADIIVLALIGERGREV 112 (347)
T ss_dssp CSTTCCCCCSEECCSCHHHHHH-SCEETTC------EEEEEECTTSSHHHHHHHHHHHS----CCSEEEEEEESCCHHHH
T ss_pred CCeeecccceecCCCCEEEEee-eeecCCC------EEEEECCCCCCHHHHHHHHhcCC----CCCEEEEEEecccHHHH
Confidence 4688999999995 3578999 9999999 99999999999999999999998 788776322110 000
Q ss_pred ccccCC------CccchhccccCCCcccc---------------------------cchhhHHHHHHHHHHHHHHHHhhh
Q 005138 84 ARCAGI------EPCTLIMDLEGTDGRER---------------------------GEDDTAFEKQSALFALAVSDIVLI 130 (712)
Q Consensus 84 ~~~~~~------~~~~~v~d~~g~~~~~r---------------------------~~~~~~ferQrv~~A~Ala~iLlL 130 (712)
....+. ....++.-..+.+...+ .......| |++++| +-
T Consensus 113 ~~~i~~~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la-------l~ 184 (347)
T 2obl_A 113 NEFLALLPQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA-------SG 184 (347)
T ss_dssp HHHHTTSCHHHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH-------TT
T ss_pred HHHHHhhhhhhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH-------cC
Confidence 000000 00000000000110000 00111224 556555 34
Q ss_pred ccc-cCCCchhhhhChhhHHHHHHHHHHhhC-CCCc-----eEEEEecCCCCcccccccccceecCCeEEEecCcccc
Q 005138 131 NMW-CHDIGREQAANKPLLKTVFQVMMRLFS-PRKT-----TLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (712)
Q Consensus 131 DEP-~~~LD~~~~a~~~l~~~v~e~l~~L~~-~~g~-----tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~ 201 (712)
+.| ++|+|+.. ...+.+++.++.+ +.|. ||++++||++ ..+|+++.++.+ |+|+.+++..+.
T Consensus 185 ~p~~t~Gldp~~------~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~d-G~Ivl~~~l~~~ 253 (347)
T 2obl_A 185 EPDVRGGFPPSV------FSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILD-GHIVLTRELAEE 253 (347)
T ss_dssp CCCCBTTBCHHH------HHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCS-EEEEBCHHHHTT
T ss_pred CCCcccCCCHHH------HHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeC-cEEEEeCCHHHc
Confidence 445 58999988 8899999998864 4487 9999999998 456899999988 999999887664
No 79
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.41 E-value=1.1e-12 Score=140.05 Aligned_cols=82 Identities=10% Similarity=-0.070 Sum_probs=63.4
Q ss_pred hhhHHHHHHHHHHHHHH-------HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccc
Q 005138 109 DDTAFEKQSALFALAVS-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENL 181 (712)
Q Consensus 109 ~~~~ferQrv~~A~Ala-------~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~ 181 (712)
..+..|+|++++|++++ ++|||||||++||+.. ...+++.+.++. + |+++|+|||+.+ +...|+
T Consensus 219 ~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~------~~~l~~~l~~~~-~-~~~vi~~tH~~~-~~~~~d 289 (322)
T 1e69_A 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYN------AERFKRLLKENS-K-HTQFIVITHNKI-VMEAAD 289 (322)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHH------HHHHHHHHHHHT-T-TSEEEEECCCTT-GGGGCS
T ss_pred hCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHH------HHHHHHHHHHhc-C-CCeEEEEECCHH-HHhhCc
Confidence 34567999999999985 6999999999999998 999999999984 3 899999999975 445688
Q ss_pred cc--cceecCCeEEEecCcc
Q 005138 182 EP--VLREDIQKIWDSVPKP 199 (712)
Q Consensus 182 ~~--~ll~~~G~I~~~g~~~ 199 (712)
++ +++.+....+.....+
T Consensus 290 ~~~~v~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 290 LLHGVTMVNGVSAIVPVEVE 309 (322)
T ss_dssp EEEEEEESSSCEEEEECCC-
T ss_pred eEEEEEEeCCEEEEEEEEcc
Confidence 65 6666623344444443
No 80
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.40 E-value=5e-12 Score=146.38 Aligned_cols=184 Identities=13% Similarity=0.115 Sum_probs=84.4
Q ss_pred ccEEEEeeeeeeccc---cccccc--cccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCC-CCCeeeccCCe
Q 005138 8 CSTQLIDGDGTFNVS---GIEHFI--KEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA-FKGRSQTTKGI 81 (712)
Q Consensus 8 ~~I~l~~l~k~y~~~---~L~~v~--~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p-~sG~~~~t~gi 81 (712)
.++.+.+++..|... .++.++ ..++.+. ...-..++|+|||||||||||++|+|+. .| ++|.+. -.|.
T Consensus 9 ~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~-~l~lp~iaIvG~nGsGKSTLL~~I~Gl~----~P~~sG~vt-~~g~ 82 (608)
T 3szr_A 9 GSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQ-DLALPAIAVIGDQSSGKSSVLEALSGVA----LPRGSGIVT-RCPL 82 (608)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHSCCS-SCCCCCEECCCCTTSCHHHHHHHHHSCC-----------CC-CSCE
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCC-cccCCeEEEECCCCChHHHHHHHHhCCC----CCCCCCeEE-EcCE
Confidence 468899999999531 232222 1111110 1233369999999999999999999998 67 688742 2232
Q ss_pred e--eccccC----CCccchhccccCCCcccccchhhHHH------------HHHHHHHHHH---HHHhhhccc------c
Q 005138 82 W--MARCAG----IEPCTLIMDLEGTDGRERGEDDTAFE------------KQSALFALAV---SDIVLINMW------C 134 (712)
Q Consensus 82 ~--~~~~~~----~~~~~~v~d~~g~~~~~r~~~~~~fe------------rQrv~~A~Al---a~iLlLDEP------~ 134 (712)
. ...... .....++.....+.......+...+. ++.+.++.+. -+++|+||| |
T Consensus 83 ~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t 162 (608)
T 3szr_A 83 VLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAV 162 (608)
T ss_dssp EEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------
T ss_pred EEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCcccccc
Confidence 1 111000 00000111111111111111111000 0001111111 168999999 9
Q ss_pred CCCchhhhhChhhHHHHHHHHHHhh-CCCCceEEEEecCCCCcccccccccce--ecCCeEEEecCcccccC
Q 005138 135 HDIGREQAANKPLLKTVFQVMMRLF-SPRKTTLMFVIRDKTRTPLENLEPVLR--EDIQKIWDSVPKPQAHM 203 (712)
Q Consensus 135 ~~LD~~~~a~~~l~~~v~e~l~~L~-~~~g~tiL~VtHDl~~~~~~~~~~~ll--~~~G~I~~~g~~~e~~~ 203 (712)
++||+.. ...+.+++.++. ++.+.++++++||++.+...+.+.+-. ...++.+.-.++++...
T Consensus 163 ~~LD~~~------~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~ 228 (608)
T 3szr_A 163 GNQPADI------GYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVD 228 (608)
T ss_dssp CCSSCSH------HHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSS
T ss_pred CCCCHHH------HHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcC
Confidence 9999987 889999999954 445889999999998765444333211 12134555556655553
No 81
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.39 E-value=1.1e-13 Score=138.70 Aligned_cols=146 Identities=13% Similarity=0.105 Sum_probs=78.9
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-eeeccccCCC--ccchhccccCCCccc---c----cc
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IWMARCAGIE--PCTLIMDLEGTDGRE---R----GE 108 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~~~~~~~~~--~~~~v~d~~g~~~~~---r----~~ 108 (712)
+|++++|+||||||||||+++|+|.. .+..|.....++ +++....... ....+....+..... . ..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~----~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 99 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV----QLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARA 99 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT----TSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH----hcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEec
Confidence 34499999999999999999999965 333232212222 3333221110 011111222222110 0 00
Q ss_pred hhhHHHHHHHHHHHHHHH----------HhhhccccCCCchhhhhC------hhhHHHHHHHHHHhhCCCCceEEEEecC
Q 005138 109 DDTAFEKQSALFALAVSD----------IVLINMWCHDIGREQAAN------KPLLKTVFQVMMRLFSPRKTTLMFVIRD 172 (712)
Q Consensus 109 ~~~~ferQrv~~A~Ala~----------iLlLDEP~~~LD~~~~a~------~~l~~~v~e~l~~L~~~~g~tiL~VtHD 172 (712)
.....+.+.+..+..++. ++++|||++.+|+....+ ......++..+.++.++.|+|||+|+|+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~ 179 (231)
T 4a74_A 100 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 179 (231)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 001112222333444444 889999999998853211 1113467777777766669999999996
Q ss_pred CCC----cccccccccceec
Q 005138 173 KTR----TPLENLEPVLRED 188 (712)
Q Consensus 173 l~~----~~~~~~~~~ll~~ 188 (712)
... +...++.++++.+
T Consensus 180 ~~~~g~~~~~~~d~~l~l~~ 199 (231)
T 4a74_A 180 QANGGHILAHSATLRVYLRK 199 (231)
T ss_dssp C---------CCSEEEEEEE
T ss_pred ccCcchhhHhhceEEEEEEe
Confidence 644 6667777777766
No 82
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.38 E-value=1.4e-13 Score=156.64 Aligned_cols=163 Identities=12% Similarity=0.054 Sum_probs=103.7
Q ss_pred cEEEEeeeeee-cccccccccc-ccccccccccccEEEEEcCCCCChhHHHHH--HhccccCccCCCCCeeeccCCe---
Q 005138 9 STQLIDGDGTF-NVSGIEHFIK-EVKLSDCGLSYAVVSIMGPQSSGKSTLLNH--LFGTNFREMDAFKGRSQTTKGI--- 81 (712)
Q Consensus 9 ~I~l~~l~k~y-~~~~L~~v~~-~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~--L~Gl~f~~m~p~sG~~~~t~gi--- 81 (712)
+++..++.+.. +..+|+++++ .+..|+ +++|+||||||||||+++ +.|+. +|.+|.+..++.-
T Consensus 12 ~~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge------~~~l~G~nGsGKSTL~~~~ll~Gl~----~~~~g~i~v~g~~~~~ 81 (525)
T 1tf7_A 12 NSEHQAIAKMRTMIEGFDDISHGGLPIGR------STLVSGTSGTGKTLFSIQFLYNGII----EFDEPGVFVTFEETPQ 81 (525)
T ss_dssp --CCSSCCEECCCCTTHHHHTTSSEETTS------EEEEEESTTSSHHHHHHHHHHHHHH----HHCCCEEEEESSSCHH
T ss_pred CccccccccccCCchhHHHhcCCCCCCCe------EEEEEcCCCCCHHHHHHHHHHHHHH----hCCCCEEEEEEeCCHH
Confidence 35555555544 3457999999 999999 999999999999999999 78998 6777764332210
Q ss_pred ---eeccccCCCc-------cchhccccCCCcccccchhhHHHHHHHHHHHHHH----HHhhhccccCC-----Cchhhh
Q 005138 82 ---WMARCAGIEP-------CTLIMDLEGTDGRERGEDDTAFEKQSALFALAVS----DIVLINMWCHD-----IGREQA 142 (712)
Q Consensus 82 ---~~~~~~~~~~-------~~~v~d~~g~~~~~r~~~~~~ferQrv~~A~Ala----~iLlLDEP~~~-----LD~~~~ 142 (712)
......++.. .++..+..........-.......+.-.+..+++ ++++||||++. +|+..
T Consensus 82 ~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~- 160 (525)
T 1tf7_A 82 DIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVV- 160 (525)
T ss_dssp HHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHH-
T ss_pred HHHHHHHHcCCChHHhhccCcEEEEecCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHH-
Confidence 0011122210 0111111110000000011233334444555555 89999999974 46665
Q ss_pred hChhhHHHHHHHHHHhhCCCCceEEEEecCCCCc---------ccccccccceec
Q 005138 143 ANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT---------PLENLEPVLRED 188 (712)
Q Consensus 143 a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~---------~~~~~~~~ll~~ 188 (712)
++.+++++.++.+ .|+|+|+++|+++.+ ..+||+++++.+
T Consensus 161 -----~~~l~~ll~~l~~-~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 161 -----RRELFRLVARLKQ-IGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp -----HHHHHHHHHHHHH-HTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred -----HHHHHHHHHHHHH-CCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 8899999999876 499999999999875 344888888877
No 83
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.36 E-value=4.2e-14 Score=157.47 Aligned_cols=166 Identities=14% Similarity=-0.042 Sum_probs=113.5
Q ss_pred ccEEEEeeeeeec--cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC----e
Q 005138 8 CSTQLIDGDGTFN--VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG----I 81 (712)
Q Consensus 8 ~~I~l~~l~k~y~--~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g----i 81 (712)
.++++.++++.|. ..+++++ +++..|+ +++|+|||||||||||++|+|+. +|++|.+...+. +
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq------~~~IvG~sGsGKSTLl~~Iag~~----~~~~G~i~~~G~r~~ev 198 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQ------RMGLFAGSGVGKSVLLGMMARYT----RADVIVVGLIGERGREV 198 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTC------EEEEEECTTSSHHHHHHHHHHHS----CCSEEEEEEESCCHHHH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCC------EEEEECCCCCCHHHHHHHHhccc----CCCeEEEEEeceecHHH
Confidence 4688999999995 3479999 9999999 99999999999999999999998 888887432111 0
Q ss_pred e-----------eccccCC-----Cc---cchh-------ccc---cCCCccc---ccchhhHHHHHHHHHHHHHHHHhh
Q 005138 82 W-----------MARCAGI-----EP---CTLI-------MDL---EGTDGRE---RGEDDTAFEKQSALFALAVSDIVL 129 (712)
Q Consensus 82 ~-----------~~~~~~~-----~~---~~~v-------~d~---~g~~~~~---r~~~~~~ferQrv~~A~Ala~iLl 129 (712)
. +.+.+++ .+ ...+ ... .+..... ........| ||+++|
T Consensus 199 ~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~-qrvslA-------- 269 (438)
T 2dpy_A 199 KDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQ-REIALA-------- 269 (438)
T ss_dssp HHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHH-HHHHHH--------
T ss_pred HHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHH-HHHHHH--------
Confidence 0 0000010 00 0000 000 0100000 001112235 888877
Q ss_pred hccc--cCCCchhhhhChhhHHHHHHHHHHhhC---CCCc-----eEEEEecCCCCcccccccccceecCCeEEEecCcc
Q 005138 130 INMW--CHDIGREQAANKPLLKTVFQVMMRLFS---PRKT-----TLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKP 199 (712)
Q Consensus 130 LDEP--~~~LD~~~~a~~~l~~~v~e~l~~L~~---~~g~-----tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~ 199 (712)
+.+| ++++|+.. ...+.+++.++.+ +.|. |+++++||++ ...|++++++.+ |+|+.++++.
T Consensus 270 l~~p~~t~glD~~~------~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~d-G~Ivl~~~~~ 340 (438)
T 2dpy_A 270 IGEPPATKGYPPSV------FAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILD-GHIVLSRRLA 340 (438)
T ss_dssp TTCCCCSSSCCTTH------HHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSS-EEEEECHHHH
T ss_pred hCCCcccccCCHHH------HHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeC-cEEEEeCCHH
Confidence 5666 89999998 8899999988865 2364 9999999999 456899999988 9999998876
Q ss_pred ccc
Q 005138 200 QAH 202 (712)
Q Consensus 200 e~~ 202 (712)
+..
T Consensus 341 ~~~ 343 (438)
T 2dpy_A 341 EAG 343 (438)
T ss_dssp HTT
T ss_pred Hcc
Confidence 654
No 84
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.34 E-value=1.9e-13 Score=163.84 Aligned_cols=139 Identities=12% Similarity=0.055 Sum_probs=86.7
Q ss_pred cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccccCCCccchhccccCCC
Q 005138 23 GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTD 102 (712)
Q Consensus 23 ~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~~~~~~~~~v~d~~g~~ 102 (712)
+++++++++..|+ +++|+||||||||||||+|.++.+ .+..|...+.....+. .... ++...|..
T Consensus 662 V~ndvsl~~~~g~------i~~ItGPNGaGKSTlLr~i~~i~~---~aq~g~~vpa~~~~i~----~~d~--i~~~ig~~ 726 (918)
T 3thx_B 662 VPNNTDLSEDSER------VMIITGPNMGGKSSYIKQVALITI---MAQIGSYVPAEEATIG----IVDG--IFTRMGAA 726 (918)
T ss_dssp CCEEEEECTTSCC------EEEEESCCCHHHHHHHHHHHHHHH---HHHHTCCBSSSEEEEE----CCSE--EEEEC---
T ss_pred ecccccccCCCCe------EEEEECCCCCchHHHHHHHHHHHH---HhhcCccccchhhhhh----HHHH--HHHhCChH
Confidence 5778888888888 999999999999999999987641 1122221111111000 0000 01111211
Q ss_pred cc-cc-cchhhHHHHHHHHHHHHHH--HHhhhccccCCCchhhhhChhhHHHHH-HHHHHhhCCCCceEEEEecCCCCcc
Q 005138 103 GR-ER-GEDDTAFEKQSALFALAVS--DIVLINMWCHDIGREQAANKPLLKTVF-QVMMRLFSPRKTTLMFVIRDKTRTP 177 (712)
Q Consensus 103 ~~-~r-~~~~~~ferQrv~~A~Ala--~iLlLDEP~~~LD~~~~a~~~l~~~v~-e~l~~L~~~~g~tiL~VtHDl~~~~ 177 (712)
.. .. .......|+|++.++.++. +++|||||++|+|+.. ...+. .++..+.++.|+|+||||||++.+.
T Consensus 727 d~l~~~~stfs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~------~~~i~~~il~~L~~~~g~tvl~vTH~~el~~ 800 (918)
T 3thx_B 727 DNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHD------GIAIAYATLEYFIRDVKSLTLFVTHYPPVCE 800 (918)
T ss_dssp -------CCHHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHH------HHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred HHHHHhHHHhhHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHH------HHHHHHHHHHHHHHhcCCeEEEEeCcHHHHH
Confidence 11 11 1122345778888877744 8999999999999987 66666 5566665445999999999987664
Q ss_pred cccccc
Q 005138 178 LENLEP 183 (712)
Q Consensus 178 ~~~~~~ 183 (712)
++++.
T Consensus 801 -l~~~~ 805 (918)
T 3thx_B 801 -LEKNY 805 (918)
T ss_dssp -HHHHT
T ss_pred -HHhhc
Confidence 35443
No 85
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.31 E-value=5.4e-13 Score=138.72 Aligned_cols=126 Identities=13% Similarity=0.091 Sum_probs=82.1
Q ss_pred cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCC-CCeeeccCC-eeeccccCCCccchh-cccc
Q 005138 23 GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAF-KGRSQTTKG-IWMARCAGIEPCTLI-MDLE 99 (712)
Q Consensus 23 ~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~-sG~~~~t~g-i~~~~~~~~~~~~~v-~d~~ 99 (712)
+|++++ +..|+ +++|+|||||||||||++|.|+. +|+ +|++.+.+. +.+... ....++ ....
T Consensus 16 vl~~i~--i~~g~------~v~i~Gp~GsGKSTll~~l~g~~----~~~~~G~I~~~g~~i~~~~~---~~~~~v~q~~~ 80 (261)
T 2eyu_A 16 KVLELC--HRKMG------LILVTGPTGSGKSTTIASMIDYI----NQTKSYHIITIEDPIEYVFK---HKKSIVNQREV 80 (261)
T ss_dssp HHHHGG--GCSSE------EEEEECSTTCSHHHHHHHHHHHH----HHHCCCEEEEEESSCCSCCC---CSSSEEEEEEB
T ss_pred HHHHHh--hCCCC------EEEEECCCCccHHHHHHHHHHhC----CCCCCCEEEEcCCcceeecC---CcceeeeHHHh
Confidence 577777 66777 99999999999999999999998 676 787543221 100000 000011 1111
Q ss_pred CCCcccccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCc
Q 005138 100 GTDGRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT 176 (712)
Q Consensus 100 g~~~~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~ 176 (712)
|... .. -++++|+++. ++|++|||+ |+.. ...++ ... . .|.++++++|+.+ +
T Consensus 81 gl~~-------~~---l~~~la~aL~~~p~illlDEp~---D~~~------~~~~l---~~~-~-~g~~vl~t~H~~~-~ 135 (261)
T 2eyu_A 81 GEDT-------KS---FADALRAALREDPDVIFVGEMR---DLET------VETAL---RAA-E-TGHLVFGTLHTNT-A 135 (261)
T ss_dssp TTTB-------SC---HHHHHHHHHHHCCSEEEESCCC---SHHH------HHHHH---HHH-H-TTCEEEEEECCSS-H
T ss_pred CCCH-------HH---HHHHHHHHHhhCCCEEEeCCCC---CHHH------HHHHH---HHH-c-cCCEEEEEeCcch-H
Confidence 1111 11 2789999998 999999999 7765 43333 332 3 4899999999987 5
Q ss_pred ccccccccceec
Q 005138 177 PLENLEPVLRED 188 (712)
Q Consensus 177 ~~~~~~~~ll~~ 188 (712)
...+++++.+..
T Consensus 136 ~~~~dri~~l~~ 147 (261)
T 2eyu_A 136 IDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHHHHHTSC
T ss_pred HHHHHHHhhhcC
Confidence 556777766643
No 86
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.30 E-value=1.2e-12 Score=155.53 Aligned_cols=150 Identities=13% Similarity=0.050 Sum_probs=88.4
Q ss_pred cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccccCCCccchhccccCCC
Q 005138 23 GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTD 102 (712)
Q Consensus 23 ~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~~~~~~~~~v~d~~g~~ 102 (712)
++++++++ ..|+ +++|+||||||||||||+|+|+.. ....|...+.... .++..... +...|..
T Consensus 597 vlndisl~-~~g~------i~~ItGpNGsGKSTlLr~iagl~~---~~q~G~~vpa~~~----~i~~~~~i--~~~~~~~ 660 (800)
T 1wb9_A 597 IANPLNLS-PQRR------MLIITGPNMGGKSTYMRQTALIAL---MAYIGSYVPAQKV----EIGPIDRI--FTRVGAA 660 (800)
T ss_dssp CCEEEEEC-SSSC------EEEEECCTTSSHHHHHHHHHHHHH---HHTTTCCBSSSEE----EECCCCEE--EEEEC--
T ss_pred eeeccccc-CCCc------EEEEECCCCCChHHHHHHHHHHHH---HHhcCcccchhcc----cceeHHHH--HhhCCHH
Confidence 56778877 6666 999999999999999999999852 1233432211110 01111110 0111111
Q ss_pred cc-cccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHH-HHHHHHhhCCCCceEEEEecCCCCcc
Q 005138 103 GR-ERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTV-FQVMMRLFSPRKTTLMFVIRDKTRTP 177 (712)
Q Consensus 103 ~~-~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v-~e~l~~L~~~~g~tiL~VtHDl~~~~ 177 (712)
.. ..+......+.+++..++..+ +++|||||++|+|+.. ...+ ..++..+.+..|.++||+||+++.+.
T Consensus 661 d~l~~~~stf~~e~~~~~~il~~a~~psLlLLDEp~~Gtd~~d------~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~ 734 (800)
T 1wb9_A 661 DDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYD------GLSLAWACAENLANKIKALTLFATHYFELTQ 734 (800)
T ss_dssp ---------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSH------HHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred HHHHhhhhhhhHHHHHHHHHHHhccCCCEEEEECCCCCCChhH------HHHHHHHHHHHHHhccCCeEEEEeCCHHHHH
Confidence 00 000000112333444334334 8999999999999875 3333 56666666535899999999997664
Q ss_pred cccccccceecCCeEEEec
Q 005138 178 LENLEPVLREDIQKIWDSV 196 (712)
Q Consensus 178 ~~~~~~~ll~~~G~I~~~g 196 (712)
.+++...+.+ |++....
T Consensus 735 -l~d~~~~v~n-~~~~~~~ 751 (800)
T 1wb9_A 735 -LPEKMEGVAN-VHLDALE 751 (800)
T ss_dssp -HHHHSTTEEE-EEEEEEE
T ss_pred -HhhhhhceEE-EEEEEEE
Confidence 6777777777 7776544
No 87
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.30 E-value=6.1e-13 Score=141.26 Aligned_cols=129 Identities=11% Similarity=0.065 Sum_probs=80.8
Q ss_pred cccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-------------------e-eec
Q 005138 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-------------------I-WMA 84 (712)
Q Consensus 25 ~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-------------------i-~~~ 84 (712)
.++++++..|+ +++|+||||||||||+++|+|+. .|++|++...+. + ++.
T Consensus 91 ~~l~~~~~~g~------vi~lvG~nGsGKTTll~~Lag~l----~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~ 160 (302)
T 3b9q_A 91 TELQLGFRKPA------VIMIVGVNGGGKTTSLGKLAHRL----KNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVV 160 (302)
T ss_dssp CSCCCCSSSCE------EEEEECCTTSCHHHHHHHHHHHH----HHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEEC
T ss_pred cccccccCCCc------EEEEEcCCCCCHHHHHHHHHHHH----HHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEE
Confidence 45667677777 99999999999999999999998 788887432111 0 000
Q ss_pred cccC-CCcc----------------chhccccCCCcccccchhhHHHHHHHHHHHHHH---H--HhhhccccCCCchhhh
Q 005138 85 RCAG-IEPC----------------TLIMDLEGTDGRERGEDDTAFEKQSALFALAVS---D--IVLINMWCHDIGREQA 142 (712)
Q Consensus 85 ~~~~-~~~~----------------~~v~d~~g~~~~~r~~~~~~ferQrv~~A~Ala---~--iLlLDEP~~~LD~~~~ 142 (712)
...+ ..+. ..++|..|...... .....+-+||+++|++++ + +|++| ||+|+|+..
T Consensus 161 q~~~~~~~~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~-~~~~eLSkqr~~iaral~~~P~e~lLvLD-ptsglD~~~- 237 (302)
T 3b9q_A 161 AEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNY-SLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLP- 237 (302)
T ss_dssp CC--CCCHHHHHHHHHHHHHHTTCSEEEECCCCCSSCCH-HHHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHH-
T ss_pred ecCCccCHHHHHHHHHHHHHHcCCcchHHhcCCCCcchh-HHHHHHHHHHHHHHHhhccCCCeeEEEEe-CCCCcCHHH-
Confidence 0001 1100 11233333322111 111223489999999998 7 99999 999999864
Q ss_pred hChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccc
Q 005138 143 ANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPL 178 (712)
Q Consensus 143 a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~ 178 (712)
. + .++.+..|.|+|++|| ++.+..
T Consensus 238 -----~--~----~~~~~~~g~t~iiiTh-lD~~~~ 261 (302)
T 3b9q_A 238 -----Q--A----REFNEVVGITGLILTK-LDGSAR 261 (302)
T ss_dssp -----H--H----HHHHHHTCCCEEEEEC-CSSCSC
T ss_pred -----H--H----HHHHHhcCCCEEEEeC-CCCCCc
Confidence 2 1 2333334899999999 455443
No 88
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.29 E-value=4.5e-13 Score=140.84 Aligned_cols=159 Identities=8% Similarity=0.031 Sum_probs=91.7
Q ss_pred ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCC-eeeccCC-ee---ecccc-----CCCc
Q 005138 22 SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKG-RSQTTKG-IW---MARCA-----GIEP 91 (712)
Q Consensus 22 ~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG-~~~~t~g-i~---~~~~~-----~~~~ 91 (712)
.+|+++++.+..|+ +++|+||||||||||+++|+|.. .|.+| ++..-.+ .. +.... +...
T Consensus 23 ~~Ld~i~~~l~~G~------~~~i~G~~G~GKTTl~~~ia~~~----~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~ 92 (296)
T 1cr0_A 23 TGINDKTLGARGGE------VIMVTSGSGMGKSTFVRQQALQW----GTAMGKKVGLAMLEESVEETAEDLIGLHNRVRL 92 (296)
T ss_dssp TTHHHHHCSBCTTC------EEEEEESTTSSHHHHHHHHHHHH----HHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHhcCCCCCe------EEEEEeCCCCCHHHHHHHHHHHH----HHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCCh
Confidence 36889999899888 99999999999999999999998 56666 3211000 00 00000 0000
Q ss_pred c----ch---------------hccccCCCcccccchhhHHH-HHHHHHHHHHH---HHhhhccccCCCchhhhhCh-hh
Q 005138 92 C----TL---------------IMDLEGTDGRERGEDDTAFE-KQSALFALAVS---DIVLINMWCHDIGREQAANK-PL 147 (712)
Q Consensus 92 ~----~~---------------v~d~~g~~~~~r~~~~~~fe-rQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~-~l 147 (712)
. .. +++..++.-..........+ +|++. |+++. ++||+|||++.++.....+. ..
T Consensus 93 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~ 171 (296)
T 1cr0_A 93 RQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKM 171 (296)
T ss_dssp GGCHHHHHHHHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHH
T ss_pred hhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHH
Confidence 0 00 00000100000000011112 56666 77776 99999999994422100011 23
Q ss_pred HHHHHHHHHHhhCCCCceEEEEecCC--C--------------------CcccccccccceecCCeE
Q 005138 148 LKTVFQVMMRLFSPRKTTLMFVIRDK--T--------------------RTPLENLEPVLREDIQKI 192 (712)
Q Consensus 148 ~~~v~e~l~~L~~~~g~tiL~VtHDl--~--------------------~~~~~~~~~~ll~~~G~I 192 (712)
...+++.++++.++.|+|||+++|+. + .+...|++++++.+ |+.
T Consensus 172 ~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~-~~~ 237 (296)
T 1cr0_A 172 IDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER-NQQ 237 (296)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEE-C--
T ss_pred HHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEec-Ccc
Confidence 67888888888766699999999995 4 55667888888877 654
No 89
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.28 E-value=1.6e-11 Score=133.38 Aligned_cols=73 Identities=5% Similarity=0.091 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHH------------HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccc
Q 005138 114 EKQSALFALAVS------------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENL 181 (712)
Q Consensus 114 erQrv~~A~Ala------------~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~ 181 (712)
|+|++++|++++ ++||||||+++||+.. +..+++.+.++. .|+|++|| ++. .++
T Consensus 270 qqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~------~~~l~~~l~~~~----qt~i~~th-~~~---~~~ 335 (359)
T 2o5v_A 270 EGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHR------RQYLLDLAASVP----QAIVTGTE-LAP---GAA 335 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHH------HHHHHHHHHHSS----EEEEEESS-CCT---TCS
T ss_pred HHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHH------HHHHHHHHHhcC----cEEEEEEe-ccc---cCC
Confidence 999999999998 6999999999999998 999999998863 69999999 443 688
Q ss_pred cccceecCCeEEEecCcccc
Q 005138 182 EPVLREDIQKIWDSVPKPQA 201 (712)
Q Consensus 182 ~~~ll~~~G~I~~~g~~~e~ 201 (712)
+++++.+ |++...|++.++
T Consensus 336 ~i~~l~~-G~i~~~g~~~~~ 354 (359)
T 2o5v_A 336 LTLRAQA-GRFTPVADEEMQ 354 (359)
T ss_dssp EEEEEET-TEEEECCCTTTS
T ss_pred EEEEEEC-CEEEecCCHHHH
Confidence 8888888 999999987665
No 90
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.27 E-value=2.5e-12 Score=128.62 Aligned_cols=150 Identities=8% Similarity=-0.010 Sum_probs=87.2
Q ss_pred ccccccc-ccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC-Cee---e-c--cccCCCc---
Q 005138 23 GIEHFIK-EVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-GIW---M-A--RCAGIEP--- 91 (712)
Q Consensus 23 ~L~~v~~-~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~-gi~---~-~--~~~~~~~--- 91 (712)
.|++++. .+..|+ +++|+||||||||||+++|+|.. .+..|++..-. ... + . ...+...
T Consensus 11 ~Ld~~~~ggi~~G~------~~~i~G~~GsGKTtl~~~l~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (235)
T 2w0m_A 11 DFDKLIQGGIPQGF------FIALTGEPGTGKTIFSLHFIAKG----LRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEY 80 (235)
T ss_dssp HHHGGGTTSEETTC------EEEEECSTTSSHHHHHHHHHHHH----HHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGG
T ss_pred HHHHHhcCCCcCCC------EEEEEcCCCCCHHHHHHHHHHHH----HHCCCeEEEEEcccCHHHHHHHHHHhcchHHHH
Confidence 4677766 667777 99999999999999999999876 34444421100 000 0 0 0011100
Q ss_pred ---cchhccccCCC--cccccchhhHHHHHHHHHHHHHH---H--HhhhccccCCC--chhhhhChhhHHHHHHHHHHhh
Q 005138 92 ---CTLIMDLEGTD--GRERGEDDTAFEKQSALFALAVS---D--IVLINMWCHDI--GREQAANKPLLKTVFQVMMRLF 159 (712)
Q Consensus 92 ---~~~v~d~~g~~--~~~r~~~~~~ferQrv~~A~Ala---~--iLlLDEP~~~L--D~~~~a~~~l~~~v~e~l~~L~ 159 (712)
...+.+..... ...........+.++.+.+.+.. + ++++|||++.+ |+.. ...+++.+.++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~------~~~~~~~l~~~~ 154 (235)
T 2w0m_A 81 IEKKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAM------ARKISYYLKRVL 154 (235)
T ss_dssp BTTTEEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGG------HHHHHHHHHHHH
T ss_pred hhCCEEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHH------HHHHHHHHHHHH
Confidence 00111111000 00000011222334444444333 7 99999999877 7765 788899998887
Q ss_pred CCCCceEEEEecCC--------CCcccccccccceec
Q 005138 160 SPRKTTLMFVIRDK--------TRTPLENLEPVLRED 188 (712)
Q Consensus 160 ~~~g~tiL~VtHDl--------~~~~~~~~~~~ll~~ 188 (712)
++.|+|+|+++|+. ..+...||+++++..
T Consensus 155 ~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 155 NKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRR 191 (235)
T ss_dssp HHTTEEEEEEEC-----------CHHHHCSEEEEEEE
T ss_pred HhCCCeEEEEeccCcccccccccchheeeeEEEEEEE
Confidence 66699999999999 446667888887765
No 91
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.26 E-value=3.1e-13 Score=141.25 Aligned_cols=119 Identities=19% Similarity=0.200 Sum_probs=72.1
Q ss_pred EEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC----------ee-eccccCCCccchhccccCCCcccccc--
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG----------IW-MARCAGIEPCTLIMDLEGTDGRERGE-- 108 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g----------i~-~~~~~~~~~~~~v~d~~g~~~~~r~~-- 108 (712)
.++|+||||||||||+|+|+|+. .|++|++...+. +- +....+......+.|..|........
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~----~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ----VSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH----C------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC----CCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHH
Confidence 68999999999999999999999 788887432110 00 00111122334556666553221110
Q ss_pred ------------------hhhHHHHHHHHHHHHHHHHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEe
Q 005138 109 ------------------DDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVI 170 (712)
Q Consensus 109 ------------------~~~~ferQrv~~A~Ala~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~Vt 170 (712)
..+..|+||+.+|+|++-++++|||+++||+.. .++++.+.+. +++|+|+
T Consensus 80 ~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD----------~~~l~~L~~~--~~vI~Vi 147 (270)
T 3sop_A 80 WEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD----------LEFMKHLSKV--VNIIPVI 147 (270)
T ss_dssp SHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH----------HHHHHHHHTT--SEEEEEE
T ss_pred HHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH----------HHHHHHHHhc--CcEEEEE
Confidence 001118899999999999999999999999853 3455566543 8999999
Q ss_pred cCCCCc
Q 005138 171 RDKTRT 176 (712)
Q Consensus 171 HDl~~~ 176 (712)
|..+..
T Consensus 148 ~K~D~l 153 (270)
T 3sop_A 148 AKADTM 153 (270)
T ss_dssp TTGGGS
T ss_pred eccccC
Confidence 987644
No 92
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.26 E-value=1e-14 Score=154.88 Aligned_cols=149 Identities=12% Similarity=0.063 Sum_probs=94.7
Q ss_pred cEEEEeeeeeeccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeecc---CCeeecc
Q 005138 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTT---KGIWMAR 85 (712)
Q Consensus 9 ~I~l~~l~k~y~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t---~gi~~~~ 85 (712)
+|++.|+++.|...+|++++++++.|+ +++|+||||||||||+++|+|+. +|++... ....+.+
T Consensus 101 ~i~~~~vs~~y~~~vL~~vsl~i~~Ge------~vaIvGpsGsGKSTLl~lL~gl~-------~G~I~~~v~q~~~lf~~ 167 (305)
T 2v9p_A 101 FFNYQNIELITFINALKLWLKGIPKKN------CLAFIGPPNTGKSMLCNSLIHFL-------GGSVLSFANHKSHFWLA 167 (305)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTCTTCS------EEEEECSSSSSHHHHHHHHHHHH-------TCEEECGGGTTSGGGGG
T ss_pred eEEEEEEEEEcChhhhccceEEecCCC------EEEEECCCCCcHHHHHHHHhhhc-------CceEEEEecCccccccc
Confidence 477889999886457999999999999 99999999999999999999986 4664211 1111111
Q ss_pred ccCCCccchhcccc--------C-CCcccccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHH
Q 005138 86 CAGIEPCTLIMDLE--------G-TDGRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQ 153 (712)
Q Consensus 86 ~~~~~~~~~v~d~~--------g-~~~~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e 153 (712)
.+...+..+..+.. . ++....+...+..|||| |+|++ ++|| |++||+.. ...+..
T Consensus 168 ti~~~ni~~~~~~~~~~~~~i~~~L~~gldg~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~------~~~i~~ 234 (305)
T 2v9p_A 168 SLADTRAALVDDATHACWRYFDTYLRNALDGYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQA------EDRYLY 234 (305)
T ss_dssp GGTTCSCEEEEEECHHHHHHHHHTTTGGGGTCCEECCCSSC---CCCEECCCCEEE----EESSCSTT------CGGGGG
T ss_pred cHHHHhhccCccccHHHHHHHHHHhHccCCccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHH------HHHHHH
Confidence 11001111110000 0 11111122334559999 88888 7777 99999986 333321
Q ss_pred HHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCcccc
Q 005138 154 VMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQA 201 (712)
Q Consensus 154 ~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e~ 201 (712)
++|++..+ ..|+++ ++.+ |+|+..|++.++
T Consensus 235 ---------------ltH~~~~~-~~aD~i-vl~~-G~iv~~g~~~el 264 (305)
T 2v9p_A 235 ---------------LHSRVQTF-RFEQPC-TDES-GEQPFNITDADW 264 (305)
T ss_dssp ---------------GTTTEEEE-ECCCCC-CCC----CCCCCCHHHH
T ss_pred ---------------HhCCHHHH-HhCCEE-EEeC-CEEEEeCCHHHH
Confidence 17888755 468999 8888 999998887654
No 93
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.25 E-value=2e-12 Score=152.77 Aligned_cols=139 Identities=17% Similarity=0.159 Sum_probs=87.8
Q ss_pred EEEEeeeeeec----cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeecc
Q 005138 10 TQLIDGDGTFN----VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMAR 85 (712)
Q Consensus 10 I~l~~l~k~y~----~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~ 85 (712)
|.+.++..-.- ..++++++++ |+ +++|+||||||||||||+|+|+.. .+..|...+....
T Consensus 551 i~i~~~rHP~le~~~~~vl~disl~---g~------i~~I~GpNGsGKSTlLr~iagl~~---~~~~G~~vpa~~~---- 614 (765)
T 1ewq_A 551 LQIRAGRHPVVERRTEFVPNDLEMA---HE------LVLITGPNMAGKSTFLRQTALIAL---LAQVGSFVPAEEA---- 614 (765)
T ss_dssp EEEEEECCTTGGGTSCCCCEEEEES---SC------EEEEESCSSSSHHHHHHHHHHHHH---HHTTTCCBSSSEE----
T ss_pred EEEEEeECceEccCCceEeeeccCC---Cc------EEEEECCCCCChHHHHHHHHhhhh---hcccCceeehhcc----
Confidence 56666533221 1246677776 66 999999999999999999999862 2456654322111
Q ss_pred ccCCCccchhccccCCCcccccchhhHHHHHHHHHHHHH--H---HHhhhccc---cCCCchhhhhChhhH-HHHHHHHH
Q 005138 86 CAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAV--S---DIVLINMW---CHDIGREQAANKPLL-KTVFQVMM 156 (712)
Q Consensus 86 ~~~~~~~~~v~d~~g~~~~~r~~~~~~ferQrv~~A~Al--a---~iLlLDEP---~~~LD~~~~a~~~l~-~~v~e~l~ 156 (712)
.+++.... +...+....... ....|+++++.++.++ + +++||||| |+++|+.. . ..+.+.+.
T Consensus 615 ~i~~v~~i--~~~~~~~d~l~~-g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~------~~~~i~~~L~ 685 (765)
T 1ewq_A 615 HLPLFDGI--YTRIGASDDLAG-GKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVA------IATAVAEALH 685 (765)
T ss_dssp EECCCSEE--EEECCC-------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHH------HHHHHHHHHH
T ss_pred ceeeHHHh--hccCCHHHHHHh-cccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHH------HHHHHHHHHH
Confidence 11211111 111111111111 1246788999999888 4 89999999 88899865 3 45666666
Q ss_pred HhhCCCCceEEEEecCCCCcc
Q 005138 157 RLFSPRKTTLMFVIRDKTRTP 177 (712)
Q Consensus 157 ~L~~~~g~tiL~VtHDl~~~~ 177 (712)
+ .|.++||+||+++.+.
T Consensus 686 ~----~g~~vl~~TH~~~l~~ 702 (765)
T 1ewq_A 686 E----RRAYTLFATHYFELTA 702 (765)
T ss_dssp H----HTCEEEEECCCHHHHT
T ss_pred h----CCCEEEEEeCCHHHHH
Confidence 5 3889999999987654
No 94
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.23 E-value=5.3e-12 Score=135.86 Aligned_cols=70 Identities=11% Similarity=0.126 Sum_probs=55.8
Q ss_pred hhHHHHHHHHHH------HHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccc
Q 005138 110 DTAFEKQSALFA------LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN 180 (712)
Q Consensus 110 ~~~ferQrv~~A------~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~ 180 (712)
.+..|+|++++| ++++ ++|||||||++||+.. ...+++.+.++.+. |.|+|+||||.+ +...|
T Consensus 249 lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~------~~~l~~~l~~~~~~-~~~vi~~sH~~~-~~~~~ 320 (339)
T 3qkt_A 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEER------RRKLITIMERYLKK-IPQVILVSHDEE-LKDAA 320 (339)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHH------HHHHHHHHHHTGGG-SSEEEEEESCGG-GGGGC
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHH------HHHHHHHHHHHHhc-CCEEEEEEChHH-HHHhC
Confidence 345699965444 4444 7999999999999998 99999999998765 889999999965 55678
Q ss_pred cccccee
Q 005138 181 LEPVLRE 187 (712)
Q Consensus 181 ~~~~ll~ 187 (712)
++++++.
T Consensus 321 d~~~~l~ 327 (339)
T 3qkt_A 321 DHVIRIS 327 (339)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 8877664
No 95
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.23 E-value=4.2e-12 Score=144.56 Aligned_cols=139 Identities=12% Similarity=0.054 Sum_probs=92.6
Q ss_pred ccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccc------------cCCCccchhccccCCCcc-
Q 005138 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARC------------AGIEPCTLIMDLEGTDGR- 104 (712)
Q Consensus 38 ~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~------------~~~~~~~~v~d~~g~~~~- 104 (712)
.+|++++|+||||||||||+++++|.. .|. |.. .+++... .+.....+. ..|....
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~----~~~-G~~----vi~~~~ee~~~~l~~~~~~~g~~~~~~~--~~g~~~~~ 347 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENA----CAN-KER----AILFAYEESRAQLLRNAYSWGMDFEEME--RQNLLKIV 347 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHH----HTT-TCC----EEEEESSSCHHHHHHHHHTTSCCHHHHH--HTTSEEEC
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH----HhC-CCC----EEEEEEeCCHHHHHHHHHHcCCCHHHHH--hCCCEEEE
Confidence 345599999999999999999999998 453 541 0111110 000000000 0011000
Q ss_pred -cccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCC-------
Q 005138 105 -ERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDK------- 173 (712)
Q Consensus 105 -~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl------- 173 (712)
.........|+|++++|+++. ++||+| |+++||+.. .+...+..+.+++..+.+ .|+|+|+|+|+.
T Consensus 348 ~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~-~~~~~~~~i~~ll~~l~~-~g~tvilvsh~~~~~~~~~ 424 (525)
T 1tf7_A 348 CAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGV-SNNAFRQFVIGVTGYAKQ-EEITGLFTNTSDQFMGAHS 424 (525)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSS-CHHHHHHHHHHHHHHHHH-TTCEEEEEEECSSSSCCCS
T ss_pred EeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhC-ChHHHHHHHHHHHHHHHh-CCCEEEEEECcccccCccc
Confidence 011223566999999999998 999999 999999871 001137888888888765 499999999999
Q ss_pred ---CCcccccccccceecCCe
Q 005138 174 ---TRTPLENLEPVLREDIQK 191 (712)
Q Consensus 174 ---~~~~~~~~~~~ll~~~G~ 191 (712)
..+...||+++++.+ |+
T Consensus 425 ~~~~~l~~~~D~vi~L~~-ge 444 (525)
T 1tf7_A 425 ITDSHISTITDTIILLQY-VE 444 (525)
T ss_dssp SCSSCCTTTCSEEEEEEE-EE
T ss_pred ccCcccceeeeEEEEEEE-EE
Confidence 666778899888877 54
No 96
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.22 E-value=1.7e-13 Score=138.38 Aligned_cols=143 Identities=13% Similarity=-0.022 Sum_probs=79.9
Q ss_pred cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCee-------eccccCCC---cc
Q 005138 23 GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIW-------MARCAGIE---PC 92 (712)
Q Consensus 23 ~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~-------~~~~~~~~---~~ 92 (712)
.|++++|++..|+ +++|+||||||||||+++|+|+. | |++....... .....++. +.
T Consensus 12 ~l~~isl~i~~G~------~~~lvGpsGsGKSTLl~~L~g~~-----p--G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~ 78 (218)
T 1z6g_A 12 SGLVPRGSMNNIY------PLVICGPSGVGKGTLIKKLLNEF-----P--NYFYFSVSCTTRKKREKEKEGVDYYFIDKT 78 (218)
T ss_dssp ----------CCC------CEEEECSTTSSHHHHHHHHHHHS-----T--TTEEECCCEECSCCCSSCCBTTTBEECCHH
T ss_pred cccCCceecCCCC------EEEEECCCCCCHHHHHHHHHhhC-----C--CcEEEeecccCCCCCcccccCCeEEECCHH
Confidence 5899999999999 99999999999999999999987 3 5432200000 00011110 00
Q ss_pred c---------hh------ccccCCCccc------------ccchhhHHHHHHHHH-----HHHHH---HHhhhccccCCC
Q 005138 93 T---------LI------MDLEGTDGRE------------RGEDDTAFEKQSALF-----ALAVS---DIVLINMWCHDI 137 (712)
Q Consensus 93 ~---------~v------~d~~g~~~~~------------r~~~~~~ferQrv~~-----A~Ala---~iLlLDEP~~~L 137 (712)
. ++ ....|.+... ...+....|+||+++ ++++. ++++||||++++
T Consensus 79 ~~~~~~~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~ 158 (218)
T 1z6g_A 79 IFEDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTR 158 (218)
T ss_dssp HHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHT
T ss_pred HHHHhhhccchhhhhhcccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhc
Confidence 0 00 0000111000 001225669999999 66666 799999999999
Q ss_pred chhhhhChhhHHHHHHHHHHhhCC------CCceEEEEecCCCCccccccccc
Q 005138 138 GREQAANKPLLKTVFQVMMRLFSP------RKTTLMFVIRDKTRTPLENLEPV 184 (712)
Q Consensus 138 D~~~~a~~~l~~~v~e~l~~L~~~------~g~tiL~VtHDl~~~~~~~~~~~ 184 (712)
|... ...+.+.+.++... .+...|+|+||++++...+++++
T Consensus 159 d~~~------~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii 205 (218)
T 1z6g_A 159 NTEN------QEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYL 205 (218)
T ss_dssp CCCC------HHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHH
T ss_pred CCCC------HHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHH
Confidence 9876 55555555444221 36788899999877766555544
No 97
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.19 E-value=4.1e-12 Score=137.84 Aligned_cols=137 Identities=10% Similarity=0.046 Sum_probs=83.8
Q ss_pred cccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-e-------------------eec
Q 005138 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-I-------------------WMA 84 (712)
Q Consensus 25 ~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i-------------------~~~ 84 (712)
.++++++..|+ +++|+||||||||||+++|+|+. .|++|++...+. . .+.
T Consensus 148 ~~l~l~~~~g~------vi~lvG~nGsGKTTll~~Lag~l----~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~ 217 (359)
T 2og2_A 148 TELQLGFRKPA------VIMIVGVNGGGKTTSLGKLAHRL----KNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVV 217 (359)
T ss_dssp CSCCCCSSSSE------EEEEECCTTSCHHHHHHHHHHHH----HHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEEC
T ss_pred CCcceecCCCe------EEEEEcCCCChHHHHHHHHHhhc----cccCCEEEEecccccccchhHHHHHHHHhcCeEEEE
Confidence 35666666666 99999999999999999999998 788887432111 0 001
Q ss_pred cccC-CCcc----------------chhccccCCCcccccchhhHHHHHHHHHHHHHH---H--HhhhccccCCCchhhh
Q 005138 85 RCAG-IEPC----------------TLIMDLEGTDGRERGEDDTAFEKQSALFALAVS---D--IVLINMWCHDIGREQA 142 (712)
Q Consensus 85 ~~~~-~~~~----------------~~v~d~~g~~~~~r~~~~~~ferQrv~~A~Ala---~--iLlLDEP~~~LD~~~~ 142 (712)
...+ ..+. ..++|..|...... .....+-+||+++|++++ + +|++| ||+|+|+..
T Consensus 218 q~~~~~~p~~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~-~~~~eLSkqr~~iaral~~~P~e~lLvLD-pttglD~~~- 294 (359)
T 2og2_A 218 AEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNY-SLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLP- 294 (359)
T ss_dssp CSSSSCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCH-HHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHH-
T ss_pred ecccccChhhhHHHHHHHHHhCCCHHHHHHhcCCChhhh-hHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCCCHHH-
Confidence 1111 0000 11233334322111 111223589999999998 7 99999 999999864
Q ss_pred hChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccce
Q 005138 143 ANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLR 186 (712)
Q Consensus 143 a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll 186 (712)
. + .++.+..|.|+|++|| ++.+........+.
T Consensus 295 -----~--~----~~~~~~~g~t~iiiTh-lD~~~~gG~~lsi~ 326 (359)
T 2og2_A 295 -----Q--A----REFNEVVGITGLILTK-LDGSARGGCVVSVV 326 (359)
T ss_dssp -----H--H----HHHHHHTCCCEEEEES-CTTCSCTHHHHHHH
T ss_pred -----H--H----HHHHHhcCCeEEEEec-CcccccccHHHHHH
Confidence 2 1 2233334899999999 55544433333333
No 98
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.10 E-value=4.1e-12 Score=134.71 Aligned_cols=133 Identities=14% Similarity=0.085 Sum_probs=65.0
Q ss_pred Eeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhcc-ccCccCCCCCeee-------ccCC---
Q 005138 13 IDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGT-NFREMDAFKGRSQ-------TTKG--- 80 (712)
Q Consensus 13 ~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl-~f~~m~p~sG~~~-------~t~g--- 80 (712)
.|+++.|+ ..++++++++ ++|+||||+|||||+|+|+|. . .|.+| +. .+.+
T Consensus 2 ~~l~~~~~~~~~l~~~~~~------------I~lvG~nG~GKSTLl~~L~g~~~----~~~~g-i~~~g~~~~~t~~~~~ 64 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFT------------LMVVGESGLGKSTLINSLFLTDL----YPERV-ISGAAEKIERTVQIEA 64 (301)
T ss_dssp ----------------CEE------------EEEEEETTSSHHHHHHHHHC-----------------------------
T ss_pred CCCcceECCEEEEcCCCEE------------EEEECCCCCCHHHHHHHHhCCCc----cCCCC-cccCCcccCCcceEee
Confidence 36778885 3457777764 499999999999999999998 6 46666 11 1111
Q ss_pred --eeeccccCCCccchhccccCCCcc----cccch---------------hhHHHHHHHHHHHHHHHHhhhccccC-CCc
Q 005138 81 --IWMARCAGIEPCTLIMDLEGTDGR----ERGED---------------DTAFEKQSALFALAVSDIVLINMWCH-DIG 138 (712)
Q Consensus 81 --i~~~~~~~~~~~~~v~d~~g~~~~----~r~~~---------------~~~ferQrv~~A~Ala~iLlLDEP~~-~LD 138 (712)
..+. ..+....+.+.|..|.... ++... ...++||++.+|++++ ++++|||++ +||
T Consensus 65 ~~~~~q-~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~-ll~ldePt~~~Ld 142 (301)
T 2qnr_A 65 STVEIE-ERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHC-CFYFISPFGHGLK 142 (301)
T ss_dssp CEEEEC----CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCE-EEEEECSSSSSCC
T ss_pred EEEEec-CCCcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhh-eeeeecCcccCCC
Confidence 1111 1112234456677766211 11000 0112666666666664 899999987 599
Q ss_pred hhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCC
Q 005138 139 REQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKT 174 (712)
Q Consensus 139 ~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~ 174 (712)
+.. . ++++++....++++|++.||+.
T Consensus 143 ~~~------~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 143 PLD------V----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHH------H----HHHHHHTTTSCEEEEECCGGGS
T ss_pred HHH------H----HHHHHHHhcCCEEEEEEeCCCC
Confidence 864 2 5566665545789999999985
No 99
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=99.08 E-value=1.5e-09 Score=120.41 Aligned_cols=335 Identities=15% Similarity=0.173 Sum_probs=193.2
Q ss_pred cEEEEeee--eee--ccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhcc------------------ccC
Q 005138 9 STQLIDGD--GTF--NVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGT------------------NFR 66 (712)
Q Consensus 9 ~I~l~~l~--k~y--~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl------------------~f~ 66 (712)
.++++..+ ..+ +..+|+.+...-... ..+..||+|+|+.++|||||||.|++. .|.
T Consensus 34 pvqlV~~~~~~~l~ln~eAl~~iL~~~~i~--~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~ 111 (457)
T 4ido_A 34 PVQVLIVKDDHSFELDETALNRILLSEAVR--DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFS 111 (457)
T ss_dssp EEEEEEECTTSCEEECHHHHHHHHSSTTTT--TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSC
T ss_pred ceeEEEECCCCCEEECHHHHHHHHhccccC--CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCce
Confidence 46666442 333 344555444331111 134559999999999999999987632 343
Q ss_pred ccCCCCCeeeccCCeeecccc-------CCCccchhccccCCCcccccchhhHHHHHHHHHHHH--HHHHhhhccccCCC
Q 005138 67 EMDAFKGRSQTTKGIWMARCA-------GIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFALA--VSDIVLINMWCHDI 137 (712)
Q Consensus 67 ~m~p~sG~~~~t~gi~~~~~~-------~~~~~~~v~d~~g~~~~~r~~~~~~ferQrv~~A~A--la~iLlLDEP~~~L 137 (712)
+ ..|...+|+|||+...+ +....++++|.+|+.+.++. .+.....||++ |++++|+|-. ..+
T Consensus 112 ~---~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDTEG~~d~~~~-----~~~d~~ifaLa~LLSS~~IyN~~-~~i 182 (457)
T 4ido_A 112 W---RGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTFDSQST-----LRDSATVFALSTMISSIQVYNLS-QNV 182 (457)
T ss_dssp C---CCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEECCBTCTTCC-----HHHHHHHHHHHHHHCSEEEEEEE-SSC
T ss_pred e---CCCCCCcCceEEEecCcccccCCCCCeeEEEEEeccCCCCcccC-----ccccHHHHHHHHHHhhheeeccc-ccC
Confidence 2 12334589999997643 22345788999998877653 12333445555 4599999853 345
Q ss_pred chhhhhChhhHHHHHHHHHHhhCCCC----ceEEEEecCCCCccccccc-c---cceecCCeEEEecCccccc-CCccch
Q 005138 138 GREQAANKPLLKTVFQVMMRLFSPRK----TTLMFVIRDKTRTPLENLE-P---VLREDIQKIWDSVPKPQAH-METPLS 208 (712)
Q Consensus 138 D~~~~a~~~l~~~v~e~l~~L~~~~g----~tiL~VtHDl~~~~~~~~~-~---~ll~~~G~I~~~g~~~e~~-~~~~l~ 208 (712)
|... ...+.-+.++-..+....+ ..++++.||...-...... . -++++.-++ ..|..++.- -...+.
T Consensus 183 ~~~~---L~~L~~~tel~~~i~~~~~~~~Fp~f~wlvRDf~l~l~~~~g~~t~~eyLe~~L~~-~~g~~~~~~~iR~~I~ 258 (457)
T 4ido_A 183 QEDD---LQHLQLFTEYGRLAMEETFLKPFQSLIFLVRDWSFPYEFSYGADGGAKFLEKRLKV-SGNQHEELQNVRKHIH 258 (457)
T ss_dssp CHHH---HHHHHHHHHHHHHHSCCCSSCSEEEEEEEEETCCCTTTSCSBHHHHHHHHHHHHCC-CTTSCHHHHHHHHHHH
T ss_pred CHHH---HHHHHHHHHHHHHHhhhcccccCCceEEEEecCCccccccCCCCCHHHHHHHHhcc-CCCCCHHHHHHHHHHH
Confidence 5433 1113333333222222212 3688999998642211000 0 001100000 011111110 012333
Q ss_pred hhhc-ccccccccch--------------hhHHHHHHHHHHhhhhhccccC--CCCCCCCCCCccccCCcccchHHHHHH
Q 005138 209 EFFN-VEVVALSSFE--------------EKEELFKEQVASLRQRFYHSVA--PGGLAGDRRGVVPASGFSFSAHEIWKV 271 (712)
Q Consensus 209 d~f~-~~~~~l~~~~--------------~~~~~f~~~v~~L~~~f~~~~~--~~~~~~~~~~~ip~~g~~~~~~~~w~~ 271 (712)
.+|. ...+.+||.. --.++|.+++..+...+..+.. +.. -.+..+....|..++....++
T Consensus 259 ~~F~~~~Cf~lp~P~~~~~~~~~~~~~l~dL~peF~~ql~~l~~~I~~~~~l~~K~---i~G~~vtg~~L~~lv~~Yv~a 335 (457)
T 4ido_A 259 SCFTNISCFLLPHPGLKVATNPNFDGKLKEIDDEFIKNLKILIPWLLSPESLDIKE---INGNKITCRGLVEYFKAYIKI 335 (457)
T ss_dssp HHEEEEEEEECCCCCHHHHHCTTCCCCGGGSCHHHHHHHHHHHHHHHSTTTCCCCE---ETTEECBHHHHHHHHHHHHHH
T ss_pred HhCCCCcEEEcCCCchhhhhchhhhcChhhCCHHHHHHHHHHHHHHhccccccccc---cCCEeecHHHHHHHHHHHHHH
Confidence 3332 1223333321 1245699999999998885322 111 122334555678899999999
Q ss_pred HHhcCCCCCchhhHHHHhhchHHHHHHHHHhhhhhhhHHHHHHHHhc-CC---cchHHHHHHHHHHHHhhchhhhhcccc
Q 005138 272 IKENKDLDLPAHKVMVATVRCEEIANEKYSSFAANEEWCELEAAVQS-GP---ISSFGKKLSSILETCLSGYDGEVLYFD 347 (712)
Q Consensus 272 I~~n~dldlp~q~~~~a~~rc~ei~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~l~~yd~~a~~y~ 347 (712)
|..+.--.+++-=..+|+..|..+..++++.|... +.+.+.. -+ ..+|-..-+.+..+|++.|+..+...-
T Consensus 336 in~g~vP~~esa~~a~ae~en~~Av~~A~~~Y~~~-----M~~~~~~~~P~~~~~eL~~~H~~~~~~Al~~F~~~~~~g~ 410 (457)
T 4ido_A 336 YQGEELPHPKSMLQATAEANNLAAVATAKDTYNKK-----MEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKMGG 410 (457)
T ss_dssp HHSSSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHSTTSCCCCHHHHHHHHHHHHHHHHHHHHHSCCTTH
T ss_pred hcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 98766556666667888999999999999887542 3333321 12 335889999999999999997776677
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 005138 348 EGVRSAKRKQLEDKLLQLV 366 (712)
Q Consensus 348 ~~V~~~kr~~L~~~~~~~l 366 (712)
+.++++-+++|+..|....
T Consensus 411 ~d~~~~~~~~L~~~l~~~~ 429 (457)
T 4ido_A 411 EEFSRRYLQQLESEIDELY 429 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888888888776653
No 100
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.07 E-value=1.1e-11 Score=122.89 Aligned_cols=136 Identities=18% Similarity=0.178 Sum_probs=74.1
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccccC-CCc-cchhccccC---------CCc-----
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAG-IEP-CTLIMDLEG---------TDG----- 103 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~~~-~~~-~~~v~d~~g---------~~~----- 103 (712)
|++++|+||||||||||+++|+|+. + ++| +.. .|........ ... ...+.+..| ...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~----~-~~G-i~~-~g~~~~~~~~~~~~ig~~~~~~~g~~~~l~~~~~~~~~~~~ 73 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL----K-SSG-VPV-DGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKR 73 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH----H-HTT-CCC-EEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc----c-cCC-EEE-cCEecchhHhhhceEEEEEEecccceehhhcccccCCcccc
Confidence 3489999999999999999999998 5 666 322 1211100000 000 001111111 000
Q ss_pred ----ccccchhhHHHHHHH-HHHH---HHH---HHhhhcc--ccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEE---
Q 005138 104 ----RERGEDDTAFEKQSA-LFAL---AVS---DIVLINM--WCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLM--- 167 (712)
Q Consensus 104 ----~~r~~~~~~ferQrv-~~A~---Ala---~iLlLDE--P~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL--- 167 (712)
...+.....+|++++ ++++ |+. ++||+|| |++.+|+.. ...+.+++. ..+.+||
T Consensus 74 ~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~------~~~l~~~l~----~~~~~ilgti 143 (189)
T 2i3b_A 74 ECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLF------IQAVRQTLS----TPGTIILGTI 143 (189)
T ss_dssp CEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHH------HHHHHHHHH----CSSCCEEEEC
T ss_pred ccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHH------HHHHHHHHh----CCCcEEEEEe
Confidence 011223456777766 3333 344 8999999 787777654 444444433 3233442
Q ss_pred EEecCCCCcccccccccceecCCeEEEe
Q 005138 168 FVIRDKTRTPLENLEPVLREDIQKIWDS 195 (712)
Q Consensus 168 ~VtHDl~~~~~~~~~~~ll~~~G~I~~~ 195 (712)
.|+|+.+ ..+.+++..+.+ |+|+.-
T Consensus 144 ~vsh~~~--~~~vd~i~~~~~-~~i~~~ 168 (189)
T 2i3b_A 144 PVPKGKP--LALVEEIRNRKD-VKVFNV 168 (189)
T ss_dssp CCCCSSC--CTTHHHHHTTCC-SEEEEC
T ss_pred ecCCCCc--hHHHHHHeecCC-cEEEEe
Confidence 3448875 234566666666 888763
No 101
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.06 E-value=1.1e-10 Score=115.29 Aligned_cols=139 Identities=14% Similarity=0.137 Sum_probs=74.2
Q ss_pred cEEEEeeeeeeccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhcccc-CccCCCCCeeecc------CCe
Q 005138 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNF-REMDAFKGRSQTT------KGI 81 (712)
Q Consensus 9 ~I~l~~l~k~y~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f-~~m~p~sG~~~~t------~gi 81 (712)
+|++.|+++.|+..++++ +.+..|. .++|+|+||||||||+|.|.|..| ..-.|+.|+.... .+.
T Consensus 3 ~l~~~~~~~~~~~~~l~~--~~~~~~~------~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~ 74 (210)
T 1pui_A 3 NLNYQQTHFVMSAPDIRH--LPSDTGI------EVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGK 74 (210)
T ss_dssp --------CEEEESSGGG--SSCSCSE------EEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTE
T ss_pred chhhhhhhheeecCCHhH--CCCCCCc------EEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCE
Confidence 589999999996555666 7777777 999999999999999999999863 1123555652210 111
Q ss_pred eeccccCC---------------------------CccchhccccCCCccc--------------------ccchhhHHH
Q 005138 82 WMARCAGI---------------------------EPCTLIMDLEGTDGRE--------------------RGEDDTAFE 114 (712)
Q Consensus 82 ~~~~~~~~---------------------------~~~~~v~d~~g~~~~~--------------------r~~~~~~fe 114 (712)
.+....|. ....++.|........ ........|
T Consensus 75 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~ 154 (210)
T 1pui_A 75 RLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGA 154 (210)
T ss_dssp EEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHH
T ss_pred EEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchh
Confidence 11111110 0011222221100000 001112237
Q ss_pred HHH-HHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCC
Q 005138 115 KQS-ALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP 161 (712)
Q Consensus 115 rQr-v~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~ 161 (712)
+|+ +..+++++ ..+++|||++++|+.+ ...+++.+.++..+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~------~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 155 RKAQLNMVREAVLAFNGDVQVETFSSLKKQG------VDKLRQKLDTWFSE 199 (210)
T ss_dssp HHHHHHHHHHHHGGGCSCEEEEECBTTTTBS------HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEeecCCCC------HHHHHHHHHHHHhh
Confidence 777 67888777 3468999999999998 99999999988764
No 102
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.04 E-value=4.3e-11 Score=129.81 Aligned_cols=119 Identities=18% Similarity=0.156 Sum_probs=70.8
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccccCccCCC-CCeeeccCC-eeeccccCCCccchhccccCCCcccccchhhHHHHH
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAF-KGRSQTTKG-IWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQ 116 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~-sG~~~~t~g-i~~~~~~~~~~~~~v~d~~g~~~~~r~~~~~~ferQ 116 (712)
++.+++|+|||||||||||++|.|.. +|. .|.+.+-.. +.+... ....++.. .........+.
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~----~~~~~~~i~t~ed~~e~~~~---~~~~~v~q------~~~~~~~~~~~-- 186 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYL----NNTKYHHILTIEDPIEFVHE---SKKCLVNQ------REVHRDTLGFS-- 186 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH----HHHCCCEEEEEESSCCSCCC---CSSSEEEE------EEBTTTBSCHH--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc----cCCCCcEEEEccCcHHhhhh---ccccceee------eeeccccCCHH--
Confidence 34499999999999999999999998 565 344321111 100000 00000000 00000111111
Q ss_pred HHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceec
Q 005138 117 SALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (712)
Q Consensus 117 rv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~ 188 (712)
-++|+||. ++|++|||+ |++. ++.+.++.. .|.++|+++|+.+.+ ..+++++.+..
T Consensus 187 -~~La~aL~~~PdvillDEp~---d~e~----------~~~~~~~~~-~G~~vl~t~H~~~~~-~~~dRli~l~~ 245 (356)
T 3jvv_A 187 -EALRSALREDPDIILVGEMR---DLET----------IRLALTAAE-TGHLVFGTLHTTSAA-KTIDRVVDVFP 245 (356)
T ss_dssp -HHHHHHTTSCCSEEEESCCC---SHHH----------HHHHHHHHH-TTCEEEEEESCSSHH-HHHHHHHHTSC
T ss_pred -HHHHHHhhhCcCEEecCCCC---CHHH----------HHHHHHHHh-cCCEEEEEEccChHH-HHHHHHhhhcC
Confidence 17888887 999999998 4443 333334444 399999999999876 56778776643
No 103
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.99 E-value=8.6e-11 Score=129.96 Aligned_cols=141 Identities=16% Similarity=0.136 Sum_probs=79.5
Q ss_pred ccEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCe--e----eccCC
Q 005138 8 CSTQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGR--S----QTTKG 80 (712)
Q Consensus 8 ~~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~--~----~~t~g 80 (712)
.+|.+.++++.|+ ..++++++|+ ++|+|+||||||||+|+|+|..+ +..|. . ..+.+
T Consensus 10 ~~l~~~~l~~~y~~~~vl~~vsf~------------I~lvG~sGaGKSTLln~L~g~~~----~~~~~~~~~~~~~~t~~ 73 (418)
T 2qag_C 10 GYVGFANLPNQVYRKSVKRGFEFT------------LMVVGESGLGKSTLINSLFLTDL----YSPEYPGPSHRIKKTVQ 73 (418)
T ss_dssp -----CCCCCCTTTTTCC-CCCEE------------EEEECCTTSSHHHHHHHHTTCCC----CCCCCCSCC-----CCE
T ss_pred CcEEEEecceeECCEEEecCCCEE------------EEEECCCCCcHHHHHHHHhCCCC----CCCCCCCcccCCcccee
Confidence 4689999999995 3467777775 39999999999999999999984 32221 1 01111
Q ss_pred eee-c---cccCCCccchhccccCCCcccccc------------hhhHHHHHHHHHHHHHH---H---Hhhhcccc-CCC
Q 005138 81 IWM-A---RCAGIEPCTLIMDLEGTDGRERGE------------DDTAFEKQSALFALAVS---D---IVLINMWC-HDI 137 (712)
Q Consensus 81 i~~-~---~~~~~~~~~~v~d~~g~~~~~r~~------------~~~~ferQrv~~A~Ala---~---iLlLDEP~-~~L 137 (712)
... . ...+......+.|..|........ ....+++|++.+|++++ + +|++|||| +++
T Consensus 74 ~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L 153 (418)
T 2qag_C 74 VEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGL 153 (418)
T ss_dssp EEEEECC------CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSC
T ss_pred eeeEEEEEecCCcccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCC
Confidence 100 0 001112234567777764321100 01234667888888876 6 89999999 799
Q ss_pred chhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCc
Q 005138 138 GREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT 176 (712)
Q Consensus 138 D~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~ 176 (712)
|+.. . +.+.++. . ++++|+|+|..+..
T Consensus 154 ~~~d------~----~~lk~L~-~-~v~iIlVinK~Dll 180 (418)
T 2qag_C 154 KPLD------I----EFMKRLH-E-KVNIIPLIAKADTL 180 (418)
T ss_dssp CHHH------H----HHHHHHT-T-TSEEEEEEESTTSS
T ss_pred CHHH------H----HHHHHHh-c-cCcEEEEEEcccCc
Confidence 9854 2 3444553 3 78999999988754
No 104
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.94 E-value=1.3e-10 Score=123.48 Aligned_cols=121 Identities=15% Similarity=0.091 Sum_probs=72.4
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-e-------------------eeccccCCCc-------
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-I-------------------WMARCAGIEP------- 91 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i-------------------~~~~~~~~~~------- 91 (712)
++++++|+||||||||||+++|+|+. .|++|++...+. . ++....+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll----~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~ 176 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY----QNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDA 176 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH----HTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH----HhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHH
Confidence 46699999999999999999999999 788887432111 0 0000000000
Q ss_pred ---------cchhccccCCCcccccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhh
Q 005138 92 ---------CTLIMDLEGTDGRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLF 159 (712)
Q Consensus 92 ---------~~~v~d~~g~~~~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~ 159 (712)
...++|..|...... .......+||+++|++++ +.+++ .||+.. ...+++.+.++.
T Consensus 177 v~~~~~~~~d~~llDt~G~~~~~~-~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t------~~~~~~~~~~~~ 244 (304)
T 1rj9_A 177 VQAMKARGYDLLFVDTAGRLHTKH-NLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVT------GQNGLEQAKKFH 244 (304)
T ss_dssp HHHHHHHTCSEEEECCCCCCTTCH-HHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTB------CTHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEecCCCCCCchH-HHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHH------HHHHHHHHHHHH
Confidence 112234444322111 122345789999999988 42333 455544 344555555555
Q ss_pred CCCCceEEEEecCCCC
Q 005138 160 SPRKTTLMFVIRDKTR 175 (712)
Q Consensus 160 ~~~g~tiL~VtHDl~~ 175 (712)
+..|.|+|++||+.+.
T Consensus 245 ~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 245 EAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHCCSEEEEECTTSS
T ss_pred HHcCCcEEEEECCccc
Confidence 4458999999999654
No 105
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.94 E-value=9.5e-12 Score=132.66 Aligned_cols=121 Identities=12% Similarity=-0.007 Sum_probs=72.5
Q ss_pred cEEEEeeeeeeccccccccccccc------------------cccccccccEEEEEcCCCCChhHHHHHHhccccCccCC
Q 005138 9 STQLIDGDGTFNVSGIEHFIKEVK------------------LSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDA 70 (712)
Q Consensus 9 ~I~l~~l~k~y~~~~L~~v~~~i~------------------~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p 70 (712)
+|++.++++.|.. .++.+++.+. .. .-.+|+++||+||||||||||+++|.|+. +|
T Consensus 43 ~i~~~~v~~~y~p-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~g~ivgI~G~sGsGKSTL~~~L~gll----~~ 116 (312)
T 3aez_A 43 QIDLLEVEEVYLP-LARLIHLQVAARQRLFAATAEFLGEPQQNP-DRPVPFIIGVAGSVAVGKSTTARVLQALL----AR 116 (312)
T ss_dssp CCCHHHHHHTHHH-HHHHHHHHHHHHHHHHHHHHHHTTCCCCCS-SSCCCEEEEEECCTTSCHHHHHHHHHHHH----HT
T ss_pred eEEeeehhhhhhh-HHHHHHHHHhhhhHHHHHHHHhhccccccc-CCCCCEEEEEECCCCchHHHHHHHHHhhc----cc
Confidence 5888999999953 4455555410 00 01345599999999999999999999998 77
Q ss_pred CCCeeeccCCeeeccccCCCccchhcccc------CCCccc-------------------ccchhhHHHHHHHHHHHHHH
Q 005138 71 FKGRSQTTKGIWMARCAGIEPCTLIMDLE------GTDGRE-------------------RGEDDTAFEKQSALFALAVS 125 (712)
Q Consensus 71 ~sG~~~~t~gi~~~~~~~~~~~~~v~d~~------g~~~~~-------------------r~~~~~~ferQrv~~A~Ala 125 (712)
..|... -+.. .....+.+. .+.+.. |.+... ........|+||+.+|++++
T Consensus 117 ~~G~~~--v~~v-~qd~~~~~~-t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~ 192 (312)
T 3aez_A 117 WDHHPR--VDLV-TTDGFLYPN-AELQRRNLMHRKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVV 192 (312)
T ss_dssp STTCCC--EEEE-EGGGGBCCH-HHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEEEEEEEE
T ss_pred cCCCCe--EEEE-ecCccCCcc-cHHHHHHHHHhcCCChHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhhhhHHHhc
Confidence 766310 0111 111011111 111111 111100 01112233899999999887
Q ss_pred ---HHhhhccccCCCch
Q 005138 126 ---DIVLINMWCHDIGR 139 (712)
Q Consensus 126 ---~iLlLDEP~~~LD~ 139 (712)
++||+|||+..+|+
T Consensus 193 ~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 193 RHPDILILEGLNVLQTG 209 (312)
T ss_dssp CSCSEEEEECTTTTCCC
T ss_pred cCCCEEEECCccccCCc
Confidence 99999999999875
No 106
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.89 E-value=4.4e-10 Score=111.63 Aligned_cols=147 Identities=12% Similarity=0.120 Sum_probs=81.6
Q ss_pred cccccc-ccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccccCCCccc--hhccccC
Q 005138 24 IEHFIK-EVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCT--LIMDLEG 100 (712)
Q Consensus 24 L~~v~~-~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~~~~~~~~--~v~d~~g 100 (712)
|+.+.. .+..|+ +++|+||||||||||++.|++ . +. +. .+++.......... -.....|
T Consensus 9 LD~~l~Ggi~~G~------~~~i~G~~GsGKTtl~~~l~~-~-----~~-~~-----v~~i~~~~~~~~~~~~~~~~~~~ 70 (220)
T 2cvh_A 9 LDSLLGGGFAPGV------LTQVYGPYASGKTTLALQTGL-L-----SG-KK-----VAYVDTEGGFSPERLVQMAETRG 70 (220)
T ss_dssp HHHHTTSSBCTTS------EEEEECSTTSSHHHHHHHHHH-H-----HC-SE-----EEEEESSCCCCHHHHHHHHHTTT
T ss_pred HHHhhcCCCcCCE------EEEEECCCCCCHHHHHHHHHH-H-----cC-Cc-----EEEEECCCCCCHHHHHHHHHhcC
Confidence 455543 455555 999999999999999999998 3 11 11 12222111000000 0001111
Q ss_pred CCccc-----ccchhhHH--HHHHHHHHHHHH----HHhhhccccCCCchhhhhC--hhhHHHHHHHHHHhhCCCCceEE
Q 005138 101 TDGRE-----RGEDDTAF--EKQSALFALAVS----DIVLINMWCHDIGREQAAN--KPLLKTVFQVMMRLFSPRKTTLM 167 (712)
Q Consensus 101 ~~~~~-----r~~~~~~f--erQrv~~A~Ala----~iLlLDEP~~~LD~~~~a~--~~l~~~v~e~l~~L~~~~g~tiL 167 (712)
.+... ........ +++++..+++++ +++++|||++.+|+..... ......+++.++++.++.|+|+|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi 150 (220)
T 2cvh_A 71 LNPEEALSRFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVI 150 (220)
T ss_dssp CCHHHHHHHEEEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred CChHHHhhcEEEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 11000 00000111 345666666665 6999999999998753111 12234566667777665689999
Q ss_pred EEecCCCC-------------cccccccccceec
Q 005138 168 FVIRDKTR-------------TPLENLEPVLRED 188 (712)
Q Consensus 168 ~VtHDl~~-------------~~~~~~~~~ll~~ 188 (712)
+++|.... +...|+.++++..
T Consensus 151 ~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~ 184 (220)
T 2cvh_A 151 VINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDK 184 (220)
T ss_dssp EEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEE
T ss_pred EEeeEEEcCCCCccccCCCcceeecCcEEEEEEE
Confidence 99998753 2345666666655
No 107
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.89 E-value=1.1e-09 Score=118.37 Aligned_cols=154 Identities=15% Similarity=0.115 Sum_probs=79.8
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-eeeccccCC--CccchhccccCCCccc------c-cc
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IWMARCAGI--EPCTLIMDLEGTDGRE------R-GE 108 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~~~~~~~~--~~~~~v~d~~g~~~~~------r-~~ 108 (712)
+|++++|+||||||||||+++|+|..- .+|++|. ..+. +++...... .....+....+.+... - ..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~--~~~~~Gg--~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~ 205 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQ--LPPEEGG--LNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARA 205 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTT--SCGGGTS--CSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc--cchhcCC--CCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEec
Confidence 344999999999999999999999751 1344431 0011 233221110 0000111111221100 0 00
Q ss_pred hhhHHHHHHHHHHHHHH----------HHhhhccccCCCchhhh-h-Ch----hhHHHHHHHHHHhhCCCCceEEEEecC
Q 005138 109 DDTAFEKQSALFALAVS----------DIVLINMWCHDIGREQA-A-NK----PLLKTVFQVMMRLFSPRKTTLMFVIRD 172 (712)
Q Consensus 109 ~~~~ferQrv~~A~Ala----------~iLlLDEP~~~LD~~~~-a-~~----~l~~~v~e~l~~L~~~~g~tiL~VtHD 172 (712)
.....+.|++.++.+++ ++||+|||++.+|+... . .. .....++..+.++.++.|+|+|+++|.
T Consensus 206 ~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~ 285 (349)
T 1pzn_A 206 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 285 (349)
T ss_dssp CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccc
Confidence 01233567777776665 47899999999988521 1 11 124566667777766669999999998
Q ss_pred CCCcccccccccceecCCeEEEecC
Q 005138 173 KTRTPLENLEPVLREDIQKIWDSVP 197 (712)
Q Consensus 173 l~~~~~~~~~~~ll~~~G~I~~~g~ 197 (712)
................ |++|..++
T Consensus 286 ~~~~~~~~~~~~~~~~-G~~l~~~~ 309 (349)
T 1pzn_A 286 QARPDAFFGDPTRPIG-GHILAHSA 309 (349)
T ss_dssp C----------------CCCCCTTC
T ss_pred ccccccccCCccccCC-cceEeecC
Confidence 7644322223333344 77776554
No 108
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.86 E-value=8.6e-10 Score=132.27 Aligned_cols=87 Identities=9% Similarity=-0.002 Sum_probs=76.8
Q ss_pred chhhHHHHHHHHHHHHHH---H--HhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccccc
Q 005138 108 EDDTAFEKQSALFALAVS---D--IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE 182 (712)
Q Consensus 108 ~~~~~ferQrv~~A~Ala---~--iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~ 182 (712)
...+..|+||+.||++|+ + +|||||||++||+.. ...++++++++.+. |.|||+||||++.+.. ||+
T Consensus 463 ~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~------~~~l~~~L~~L~~~-G~TvivVtHd~~~~~~-aD~ 534 (916)
T 3pih_A 463 TTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRD------TERLIKTLKKLRDL-GNTVIVVEHDEEVIRN-ADH 534 (916)
T ss_dssp GGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGG------HHHHHHHHHHTTTT-TCEEEEECCCHHHHHT-CSE
T ss_pred ccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHH------HHHHHHHHHHHHhc-CCEEEEEeCCHHHHHh-CCE
Confidence 445677999999999999 4 999999999999998 99999999999765 9999999999987754 999
Q ss_pred ccce------ecCCeEEEecCcccccC
Q 005138 183 PVLR------EDIQKIWDSVPKPQAHM 203 (712)
Q Consensus 183 ~~ll------~~~G~I~~~g~~~e~~~ 203 (712)
++++ .+ |+++..|++.+++.
T Consensus 535 ii~lgpgag~~~-G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 535 IIDIGPGGGTNG-GRVVFQGTVDELLK 560 (916)
T ss_dssp EEEEESSSGGGC-SEEEEEECHHHHHH
T ss_pred EEEEcCCcccCC-CEEEEeechhhhhc
Confidence 9988 55 99999999877654
No 109
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.85 E-value=5e-10 Score=108.64 Aligned_cols=104 Identities=12% Similarity=0.138 Sum_probs=64.5
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccccCCCccchhccccCCCcccccchhhHHHHHH-H
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQS-A 118 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~~~~~~~~~v~d~~g~~~~~r~~~~~~ferQr-v 118 (712)
|+.++|+||||+|||||+++|+|.. .|..|... +++... .++-.. ...+.... -
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~----~~~~g~~~----~~~~~~------~~~~~~-----------~~~~~~~~~~ 92 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI----YEKKGIRG----YFFDTK------DLIFRL-----------KHLMDEGKDT 92 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH----HHHSCCCC----CEEEHH------HHHHHH-----------HHHHHHTCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH----HHHcCCeE----EEEEHH------HHHHHH-----------HHHhcCchHH
Confidence 3499999999999999999999988 44444310 111100 000000 00000000 0
Q ss_pred HHHHHHH--HHhhhccccC-CCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCC
Q 005138 119 LFALAVS--DIVLINMWCH-DIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTR 175 (712)
Q Consensus 119 ~~A~Ala--~iLlLDEP~~-~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~ 175 (712)
.+...+. ++|+||||++ ++|+.. ...+++++.....+ |+++|++||....
T Consensus 93 ~~~~~~~~~~llilDE~~~~~~~~~~------~~~l~~ll~~~~~~-~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 93 KFLKTVLNSPVLVLDDLGSERLSDWQ------RELISYIITYRYNN-LKSTIITTNYSLQ 145 (180)
T ss_dssp HHHHHHHTCSEEEEETCSSSCCCHHH------HHHHHHHHHHHHHT-TCEEEEECCCCSC
T ss_pred HHHHHhcCCCEEEEeCCCCCcCCHHH------HHHHHHHHHHHHHc-CCCEEEEcCCChh
Confidence 1111222 8999999985 889887 77888888777654 8899999998744
No 110
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.83 E-value=5.7e-10 Score=123.28 Aligned_cols=50 Identities=28% Similarity=0.337 Sum_probs=40.0
Q ss_pred cEEEEeeeeeeccccccccccccccccccccccE--EEEEcCCCCChhHHHHHHhcccc
Q 005138 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAV--VSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 9 ~I~l~~l~k~y~~~~L~~v~~~i~~ge~g~~g~i--vaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
.+++.+ ++.|+...++++++++..|+ + ++|+||||||||||||+|+|+.+
T Consensus 16 ~l~~~~-~~~y~~~~L~~vsl~i~~Ge------i~~vaLvG~nGaGKSTLln~L~G~~l 67 (427)
T 2qag_B 16 TVPLAG-HVGFDSLPDQLVNKSVSQGF------CFNILCVGETGLGKSTLMDTLFNTKF 67 (427)
T ss_dssp -CCCCC-CC-CC--CHHHHHHSCC-CC------EEEEEEECSTTSSSHHHHHHHHTSCC
T ss_pred eEEEee-EEEECCeecCCCceEecCCC------eeEEEEECCCCCCHHHHHHHHhCccc
Confidence 466666 88885323899999999999 9 99999999999999999999863
No 111
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.82 E-value=3e-09 Score=101.19 Aligned_cols=73 Identities=11% Similarity=0.083 Sum_probs=62.1
Q ss_pred cchhhHHHHHHHHHH------HHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcc
Q 005138 107 GEDDTAFEKQSALFA------LAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (712)
Q Consensus 107 ~~~~~~ferQrv~~A------~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~ 177 (712)
....+.+|+||+++| +|++ +++|+||||++||+.. ...+.+.+.++.+. |.|+|+||||. ...
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~------~~~l~~~l~~~~~~-~~tiiivsH~~-~~~ 126 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEER------RRKLITIMERYLKK-IPQVILVSHDE-ELK 126 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHH------HHHHHHHHHHTGGG-SSEEEEEESCG-GGG
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHH------HHHHHHHHHHHHcc-CCEEEEEEChH-HHH
Confidence 345678899999886 5666 9999999999999998 99999999998764 89999999999 456
Q ss_pred ccccccccee
Q 005138 178 LENLEPVLRE 187 (712)
Q Consensus 178 ~~~~~~~ll~ 187 (712)
..|++++++.
T Consensus 127 ~~~d~ii~l~ 136 (148)
T 1f2t_B 127 DAADHVIRIS 136 (148)
T ss_dssp GGCSEEEEEE
T ss_pred HhCCEEEEEE
Confidence 6788888874
No 112
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.80 E-value=2e-09 Score=112.06 Aligned_cols=52 Identities=6% Similarity=0.090 Sum_probs=37.2
Q ss_pred HHHH---HHhhhccccC--CCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCc
Q 005138 122 LAVS---DIVLINMWCH--DIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT 176 (712)
Q Consensus 122 ~Ala---~iLlLDEP~~--~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~ 176 (712)
++++ +++|+|||++ ++|+.. ......++..+.++.++.|+|+|+++|+....
T Consensus 128 ~~l~~~~~livlDe~~~~~~~d~~~---~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 128 KRAAEGRRLMVLDTLRRFHIEEENA---SGPMAQVIGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHTTCSEEEEECGGGGCCSCTTC---HHHHHHHHHHHHHHHHHHCCEEEEEEEC----
T ss_pred HHhcCCCCEEEECCHHHhcCCCcCc---hHHHHHHHHHHHHHHHHcCCEEEEEecCCCcc
Confidence 4555 9999999999 887643 11247788888888655699999999998654
No 113
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.78 E-value=3.7e-10 Score=122.54 Aligned_cols=156 Identities=18% Similarity=0.099 Sum_probs=86.0
Q ss_pred ccccccccc--ccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCC----Ceeecc---CCeeecccc-CCCccch
Q 005138 25 EHFIKEVKL--SDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFK----GRSQTT---KGIWMARCA-GIEPCTL 94 (712)
Q Consensus 25 ~~v~~~i~~--ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~s----G~~~~t---~gi~~~~~~-~~~~~~~ 94 (712)
..+++.|.. |+ .++|+||||||||||+++|+|+. +|++ |++... .|....... ......+
T Consensus 159 ~~v~~~v~~~lg~------k~~IvG~nGsGKSTLlk~L~gl~----~~~~~~e~G~i~i~~~~~~~~~~~~~~~~~~I~~ 228 (365)
T 1lw7_A 159 KFIPKEARPFFAK------TVAILGGESSGKSVLVNKLAAVF----NTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMAL 228 (365)
T ss_dssp GGSCTTTGGGTCE------EEEEECCTTSHHHHHHHHHHHHT----TCEEECCTTHHHHHHSSSSCTTSSCTTTHHHHHH
T ss_pred hhCCHHHHHhhhC------eEEEECCCCCCHHHHHHHHHHHh----CCCcchhhHHHHHHhhcCCCcccCChhHHHHHHH
Confidence 346666666 66 99999999999999999999998 7887 663221 111000000 0000000
Q ss_pred h-----------cccc---CCCccc-ccchhhHHHHHHHHHHHHHH----HHhhhcc---cc------CCCchhhhhChh
Q 005138 95 I-----------MDLE---GTDGRE-RGEDDTAFEKQSALFALAVS----DIVLINM---WC------HDIGREQAANKP 146 (712)
Q Consensus 95 v-----------~d~~---g~~~~~-r~~~~~~ferQrv~~A~Ala----~iLlLDE---P~------~~LD~~~~a~~~ 146 (712)
+ .+.. +.+... ........++++..++.++. +++++|| |+ .++|+.+
T Consensus 229 ~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~----- 303 (365)
T 1lw7_A 229 GHQRYIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQ----- 303 (365)
T ss_dssp HHHHHHHHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCS-----
T ss_pred HHHHHHHHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHH-----
Confidence 0 0000 000000 00011122455666666553 7889999 65 3677776
Q ss_pred hHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceecCCeEEEecCccc
Q 005138 147 LLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (712)
Q Consensus 147 l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~~G~I~~~g~~~e 200 (712)
+..+.+.+.++.++.+.++|+++|. +....+++.+.++.+ +...+++.+
T Consensus 304 -r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~~---~l~~~~~~~ 352 (365)
T 1lw7_A 304 -RQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIEK---VLNEEEISE 352 (365)
T ss_dssp -HHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHHH---HTSCCCCSS
T ss_pred -HHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHH---HhcccchhH
Confidence 8889999888765558899999975 444555665555543 344444443
No 114
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.78 E-value=1.7e-09 Score=117.88 Aligned_cols=116 Identities=15% Similarity=0.124 Sum_probs=70.0
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccccCccCCC-CCeeeccCC-eeeccccCCCccchh-ccccCCCcccccchhhHHHH
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAF-KGRSQTTKG-IWMARCAGIEPCTLI-MDLEGTDGRERGEDDTAFEK 115 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~-sG~~~~t~g-i~~~~~~~~~~~~~v-~d~~g~~~~~r~~~~~~fer 115 (712)
+|++++|+|||||||||||++|.|.. +|. +|++.+.+. +.+... ....++ ....|... ..|
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~----~~~~~g~I~~~e~~~e~~~~---~~~~~v~Q~~~g~~~-------~~~-- 198 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYI----NQTKSYHIITIEDPIEYVFK---HKKSIVNQREVGEDT-------KSF-- 198 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHH----HHHSCCEEEEEESSCCSCCC---CSSSEEEEEEBTTTB-------SCS--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc----CcCCCcEEEEecccHhhhhc---cCceEEEeeecCCCH-------HHH--
Confidence 45599999999999999999999998 666 677533221 110000 000111 11111111 111
Q ss_pred HHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccce
Q 005138 116 QSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLR 186 (712)
Q Consensus 116 Qrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll 186 (712)
+.+++.++. +++++|||+ |++. . ..++.. .. .|.+++.++|+.+ +...+++.+.+
T Consensus 199 -~~~l~~~L~~~pd~illdE~~---d~e~------~---~~~l~~-~~-~g~~vi~t~H~~~-~~~~~~rl~~l 256 (372)
T 2ewv_A 199 -ADALRAALREDPDVIFVGEMR---DLET------V---ETALRA-AE-TGHLVFGTLHTNT-AIDTIHRIVDI 256 (372)
T ss_dssp -HHHHHHHTTSCCSEEEESCCC---SHHH------H---HHHHHH-HT-TTCEEEECCCCCS-HHHHHHHHHHT
T ss_pred -HHHHHHHhhhCcCEEEECCCC---CHHH------H---HHHHHH-Hh-cCCEEEEEECcch-HHHHHHHHHHh
Confidence 456777776 899999998 5543 2 233333 33 4889999999966 55566666544
No 115
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.78 E-value=2.7e-11 Score=120.39 Aligned_cols=54 Identities=17% Similarity=0.070 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHH---HHhhhccccCC-------CchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCC
Q 005138 114 EKQSALFALAVS---DIVLINMWCHD-------IGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDK 173 (712)
Q Consensus 114 erQrv~~A~Ala---~iLlLDEP~~~-------LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl 173 (712)
++|++.+|++++ .++++|||+++ ||+.. ...+.+.+.+.....|.|+++++|++
T Consensus 98 ~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~------~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 98 RRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADA------DERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp SCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCH------HHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred CeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCH------HHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 356777777776 88888999999 88776 67778877776434588999999985
No 116
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.76 E-value=3.6e-09 Score=126.54 Aligned_cols=88 Identities=8% Similarity=-0.030 Sum_probs=76.6
Q ss_pred chhhHHHHHHHHHHHHHH-----HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccccc
Q 005138 108 EDDTAFEKQSALFALAVS-----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE 182 (712)
Q Consensus 108 ~~~~~ferQrv~~A~Ala-----~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~ 182 (712)
...+..|+||+.||.+|+ +++||||||++||+.. ...+++++++|.+ .|.|||+|+||++++. .||+
T Consensus 503 ~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~------~~~L~~~L~~Lr~-~G~TVIvVeHdl~~i~-~ADr 574 (972)
T 2r6f_A 503 GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRD------NDRLIATLKSMRD-LGNTLIVVEHDEDTML-AADY 574 (972)
T ss_dssp GGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGG------HHHHHHHHHHHHT-TTCEEEEECCCHHHHH-SCSE
T ss_pred ccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHH------HHHHHHHHHHHHh-CCCEEEEEecCHHHHH-hCCE
Confidence 344667999999999998 4999999999999998 9999999999976 5999999999998765 5999
Q ss_pred cccee-----cCCeEEEecCcccccC
Q 005138 183 PVLRE-----DIQKIWDSVPKPQAHM 203 (712)
Q Consensus 183 ~~ll~-----~~G~I~~~g~~~e~~~ 203 (712)
+++|. +.|+++..|++.++..
T Consensus 575 Ii~LgpgaG~~gG~iv~~G~~~e~~~ 600 (972)
T 2r6f_A 575 LIDIGPGAGIHGGEVVAAGTPEEVMN 600 (972)
T ss_dssp EEEECSSSGGGCCSEEEEECTTTTTT
T ss_pred EEEeCCCccCCCCEEEEecCHHHHHh
Confidence 99983 3499999999887765
No 117
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.74 E-value=1e-09 Score=111.13 Aligned_cols=111 Identities=14% Similarity=0.126 Sum_probs=62.1
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccccCccCC--CCCeeeccCC-eee--ccccCCCc-------cchh----ccccCCCc
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTNFREMDA--FKGRSQTTKG-IWM--ARCAGIEP-------CTLI----MDLEGTDG 103 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p--~sG~~~~t~g-i~~--~~~~~~~~-------~~~v----~d~~g~~~ 103 (712)
|++++|+||||||||||+++|+|+. +| ..|.+..+.. ... ....++.. ...+ .+.....+
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~----~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~ 91 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ----PLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFG 91 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS----CTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC----CCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHh
Confidence 4499999999999999999999998 54 4554322211 100 00111100 0001 11100001
Q ss_pred ccccchhhHHHHHHHHHHHHHH--HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcc
Q 005138 104 RERGEDDTAFEKQSALFALAVS--DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTP 177 (712)
Q Consensus 104 ~~r~~~~~~ferQrv~~A~Ala--~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~ 177 (712)
...+. .++. +..++. +++||| ||+.. ...+.+.+. .++||++++|+++.+.
T Consensus 92 ~~yg~-----~~~~--v~~~l~~G~illLD-----LD~~~------~~~i~~~l~-----~~~tI~i~th~~~~l~ 144 (219)
T 1s96_A 92 NYYGT-----SREA--IEQVLATGVDVFLD-----IDWQG------AQQIRQKMP-----HARSIFILPPSKIELD 144 (219)
T ss_dssp EEEEE-----EHHH--HHHHHTTTCEEEEE-----CCHHH------HHHHHHHCT-----TCEEEEEECSSHHHHH
T ss_pred ccCCC-----CHHH--HHHHHhcCCeEEEE-----ECHHH------HHHHHHHcc-----CCEEEEEECCCHHHHH
Confidence 11110 1111 122222 889999 99988 777776543 3899999999998765
No 118
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.74 E-value=6.8e-10 Score=106.77 Aligned_cols=54 Identities=15% Similarity=0.042 Sum_probs=45.1
Q ss_pred EEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeee
Q 005138 12 LIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ 76 (712)
Q Consensus 12 l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~ 76 (712)
..++++.|+ ..+++++++++..|+ +++|+||||||||||+|+|+|+. |++|++.
T Consensus 10 ~~~~~~~~g~~~~l~~vsl~i~~Ge------~v~L~G~nGaGKTTLlr~l~g~l-----~~~G~V~ 64 (158)
T 1htw_A 10 DEFSMLRFGKKFAEILLKLHTEKAI------MVYLNGDLGAGKTTLTRGMLQGI-----GHQGNVK 64 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCSSCE------EEEEECSTTSSHHHHHHHHHHHT-----TCCSCCC
T ss_pred CHHHHHHHHHHHHHhccccccCCCC------EEEEECCCCCCHHHHHHHHHHhC-----CCCCeEE
Confidence 344566774 346889999999999 99999999999999999999998 6778743
No 119
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.73 E-value=7.3e-09 Score=104.35 Aligned_cols=50 Identities=6% Similarity=0.113 Sum_probs=29.6
Q ss_pred HHhhhccccCCCchhh-hh-C----hhhHHHHHHHHHHhhCCCCceEEEEecCCCC
Q 005138 126 DIVLINMWCHDIGREQ-AA-N----KPLLKTVFQVMMRLFSPRKTTLMFVIRDKTR 175 (712)
Q Consensus 126 ~iLlLDEP~~~LD~~~-~a-~----~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~ 175 (712)
+++++|+|++.+|+.- +. + ......++..+.++.++.|+|||+++|....
T Consensus 121 ~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~ 176 (243)
T 1n0w_A 121 ALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQ 176 (243)
T ss_dssp EEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-----
T ss_pred eEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeec
Confidence 7899999999988741 00 0 1124456666666665569999999997644
No 120
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.67 E-value=7e-09 Score=98.51 Aligned_cols=90 Identities=16% Similarity=0.232 Sum_probs=58.8
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccccCCCccchhccccCCCcccccchhhHHHHHHH
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSA 118 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~~~~~~~~~v~d~~g~~~~~r~~~~~~ferQrv 118 (712)
+++.++|+||||||||||+++|+|.. .+ +|. ..+++... +....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~----~~-~g~----~~~~~~~~----------~~~~~----------------- 78 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA----LE-AGK----NAAYIDAA----------SMPLT----------------- 78 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH----HT-TTC----CEEEEETT----------TSCCC-----------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH----Hh-cCC----cEEEEcHH----------HhhHH-----------------
Confidence 34499999999999999999999988 33 342 01222211 00000
Q ss_pred HHHHHHHHHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCce-EEEEecCC
Q 005138 119 LFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTT-LMFVIRDK 173 (712)
Q Consensus 119 ~~A~Ala~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~t-iL~VtHDl 173 (712)
.+. .=.++|++|||+. +++.. ...+++++.++... |.+ +|+++|..
T Consensus 79 ~~~-~~~~lLilDE~~~-~~~~~------~~~l~~li~~~~~~-g~~~iiits~~~ 125 (149)
T 2kjq_A 79 DAA-FEAEYLAVDQVEK-LGNEE------QALLFSIFNRFRNS-GKGFLLLGSEYT 125 (149)
T ss_dssp GGG-GGCSEEEEESTTC-CCSHH------HHHHHHHHHHHHHH-TCCEEEEEESSC
T ss_pred HHH-hCCCEEEEeCccc-cChHH------HHHHHHHHHHHHHc-CCcEEEEECCCC
Confidence 000 0028999999987 66554 77788888877654 677 88888853
No 121
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.67 E-value=9.6e-09 Score=122.29 Aligned_cols=88 Identities=13% Similarity=-0.033 Sum_probs=76.0
Q ss_pred chhhHHHHHHHHHHHHHH---H--HhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccccc
Q 005138 108 EDDTAFEKQSALFALAVS---D--IVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE 182 (712)
Q Consensus 108 ~~~~~ferQrv~~A~Ala---~--iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~ 182 (712)
...+..|+||+.||++|+ + ++||||||++||+.. ...+++++.+|.+. |.|||+|+||++.+. .||+
T Consensus 378 ~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~------~~~L~~~l~~L~~~-G~TVIvVeHdl~~l~-~aD~ 449 (842)
T 2vf7_A 378 PTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPAD------TEALLSALENLKRG-GNSLFVVEHDLDVIR-RADW 449 (842)
T ss_dssp GGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGG------HHHHHHHHHHHHTT-TCEEEEECCCHHHHT-TCSE
T ss_pred CcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHH------HHHHHHHHHHHHHc-CCEEEEEcCCHHHHH-hCCE
Confidence 345667999999999999 2 899999999999999 99999999999764 999999999998654 5899
Q ss_pred cccee-----cCCeEEEecCcccccC
Q 005138 183 PVLRE-----DIQKIWDSVPKPQAHM 203 (712)
Q Consensus 183 ~~ll~-----~~G~I~~~g~~~e~~~ 203 (712)
++++. +.|+++..|++.+...
T Consensus 450 ii~lgpgaG~~~G~iv~~g~~~~~~~ 475 (842)
T 2vf7_A 450 LVDVGPEAGEKGGEILYSGPPEGLKH 475 (842)
T ss_dssp EEEECSSSGGGCCSEEEEECGGGGGG
T ss_pred EEEeCCCcccCCCEEEEecCHHHHHh
Confidence 99983 3499999999877654
No 122
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.65 E-value=5.3e-09 Score=125.47 Aligned_cols=87 Identities=15% Similarity=0.050 Sum_probs=75.0
Q ss_pred hhhHHHHHHHHHHHHHH-----HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccc
Q 005138 109 DDTAFEKQSALFALAVS-----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEP 183 (712)
Q Consensus 109 ~~~~ferQrv~~A~Ala-----~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~ 183 (712)
..+..|+||+.||.+|+ +++||||||++||+.. ...+++++++|.+ .|.|||+|+||++++. .||++
T Consensus 521 tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~------~~~L~~~L~~Lr~-~G~TVIvVeHdl~~i~-~ADrI 592 (993)
T 2ygr_A 521 TLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRD------NRRLIETLTRLRD-LGNTLIVVEHDEDTIE-HADWI 592 (993)
T ss_dssp GCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHH------HHHHHHHHHHHHH-TTCEEEEECCCHHHHH-TCSEE
T ss_pred cCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHH------HHHHHHHHHHHHH-cCCEEEEECCCHHHHH-hCCEE
Confidence 34556999999999998 4999999999999998 9999999999976 4999999999998765 69999
Q ss_pred ccee-----cCCeEEEecCcccccC
Q 005138 184 VLRE-----DIQKIWDSVPKPQAHM 203 (712)
Q Consensus 184 ~ll~-----~~G~I~~~g~~~e~~~ 203 (712)
++|. +.|+++..|++.+...
T Consensus 593 i~Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 593 VDIGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp EEECSSSGGGCCSCCEEECHHHHHH
T ss_pred EEecCccccCCCEEEEeeCHHHhhh
Confidence 9983 3499999999877654
No 123
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.64 E-value=6.2e-09 Score=111.60 Aligned_cols=117 Identities=12% Similarity=0.122 Sum_probs=68.4
Q ss_pred ccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccC-------------------Ce-eeccccCCCccch---
Q 005138 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTK-------------------GI-WMARCAGIEPCTL--- 94 (712)
Q Consensus 38 ~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~-------------------gi-~~~~~~~~~~~~~--- 94 (712)
.++++++|+||||||||||+++|+|+. .|..|++...+ |+ .+....+..+...
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l----~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e 202 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL----KNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYD 202 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH----HHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH----HhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHH
Confidence 356699999999999999999999998 78888743211 10 1110001111111
Q ss_pred -------------hccccCCCcccccchhhHHHHHHHHHHHHHHHHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCC
Q 005138 95 -------------IMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP 161 (712)
Q Consensus 95 -------------v~d~~g~~~~~r~~~~~~ferQrv~~A~Ala~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~ 161 (712)
+.|..|.... ......+... ++.++..|||+..||+.. ...+++.++.+.+.
T Consensus 203 ~l~~~~~~~~d~vliDtaG~~~~-----~~~l~~eL~~----i~ral~~de~llvLDa~t------~~~~~~~~~~~~~~ 267 (328)
T 3e70_C 203 AIQHAKARGIDVVLIDTAGRSET-----NRNLMDEMKK----IARVTKPNLVIFVGDALA------GNAIVEQARQFNEA 267 (328)
T ss_dssp HHHHHHHHTCSEEEEEECCSCCT-----TTCHHHHHHH----HHHHHCCSEEEEEEEGGG------TTHHHHHHHHHHHH
T ss_pred HHHHHHhccchhhHHhhccchhH-----HHHHHHHHHH----HHHHhcCCCCEEEEecHH------HHHHHHHHHHHHHh
Confidence 1222222110 0111222222 335666888888888766 45666666666545
Q ss_pred CCceEEEEecCC
Q 005138 162 RKTTLMFVIRDK 173 (712)
Q Consensus 162 ~g~tiL~VtHDl 173 (712)
.+.|+|++||.-
T Consensus 268 ~~it~iilTKlD 279 (328)
T 3e70_C 268 VKIDGIILTKLD 279 (328)
T ss_dssp SCCCEEEEECGG
T ss_pred cCCCEEEEeCcC
Confidence 689999999954
No 124
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.55 E-value=1.5e-09 Score=105.98 Aligned_cols=54 Identities=6% Similarity=-0.120 Sum_probs=37.1
Q ss_pred CCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecC-CCCcccccccccceecCCeEEEecCccc
Q 005138 136 DIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRD-KTRTPLENLEPVLREDIQKIWDSVPKPQ 200 (712)
Q Consensus 136 ~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHD-l~~~~~~~~~~~ll~~~G~I~~~g~~~e 200 (712)
++|+.. +.. ++.+..+.. .+.++|.++|. ++.+...|++++ .+ |+++..|+++.
T Consensus 127 ~ld~~~------~~~-~~~~~~~~~-~~~~ii~tsh~~~~~~e~~~~~i~--~~-g~~~~~~~~~~ 181 (189)
T 2bdt_A 127 QMGERC------LEL-VEEFESKGI-DERYFYNTSHLQPTNLNDIVKNLK--TN-PRFIFCMAGDP 181 (189)
T ss_dssp --CGGG------GHH-HHHHHHTTC-CTTSEEECSSSCGGGHHHHHHHHH--HC-GGGSCC-----
T ss_pred cCCHHH------HHH-HHHHhhcCC-CccEEEeCCCCChhhHHHHHHHHh--hC-CcEEEeecCCc
Confidence 677665 666 777777754 47899999998 888888888876 55 99999988654
No 125
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.53 E-value=1.9e-08 Score=109.14 Aligned_cols=132 Identities=13% Similarity=0.061 Sum_probs=78.2
Q ss_pred cccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccccCCCccchhccccCCCcc
Q 005138 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGR 104 (712)
Q Consensus 25 ~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~~~~~~~~~v~d~~g~~~~ 104 (712)
+++++.+..|+ +++|+||||||||||+|+|.|+. +|++|.+...+...+..........++..
T Consensus 166 ~~l~~~i~~G~------~i~ivG~sGsGKSTll~~l~~~~----~~~~g~I~ie~~~e~~~~~~~~~v~~v~~------- 228 (361)
T 2gza_A 166 SFLRRAVQLER------VIVVAGETGSGKTTLMKALMQEI----PFDQRLITIEDVPELFLPDHPNHVHLFYP------- 228 (361)
T ss_dssp HHHHHHHHTTC------CEEEEESSSSCHHHHHHHHHTTS----CTTSCEEEEESSSCCCCTTCSSEEEEECC-------
T ss_pred HHHHHHHhcCC------EEEEECCCCCCHHHHHHHHHhcC----CCCceEEEECCccccCccccCCEEEEeec-------
Confidence 78888999998 99999999999999999999999 78888753322111100000000011110
Q ss_pred cccchh-hHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccc
Q 005138 105 ERGEDD-TAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN 180 (712)
Q Consensus 105 ~r~~~~-~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~ 180 (712)
...... .....++..++.++. +.++++|+.. ..+.+.+..+... ..|++.++|..+ +...+
T Consensus 229 q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------------~~~~~~l~~l~~g-~~~~l~t~H~~~-~~~~~ 293 (361)
T 2gza_A 229 SEAKEEENAPVTAATLLRSCLRMKPTRILLAELRG-------------GEAYDFINVAASG-HGGSITSCHAGS-CELTF 293 (361)
T ss_dssp ----------CCHHHHHHHHTTSCCSEEEESCCCS-------------THHHHHHHHHHTT-CCSCEEEEECSS-HHHHH
T ss_pred CccccccccccCHHHHHHHHHhcCCCEEEEcCchH-------------HHHHHHHHHHhcC-CCeEEEEECCCC-HHHHH
Confidence 000000 012235556666665 7788888754 1234455555432 457889999965 55567
Q ss_pred ccccceec
Q 005138 181 LEPVLRED 188 (712)
Q Consensus 181 ~~~~ll~~ 188 (712)
+|+..+..
T Consensus 294 ~Rl~~l~~ 301 (361)
T 2gza_A 294 ERLALMVL 301 (361)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 77776665
No 126
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.50 E-value=1e-08 Score=112.38 Aligned_cols=64 Identities=9% Similarity=-0.013 Sum_probs=51.0
Q ss_pred HHHHhhhccccCCCchhhhhChhhHHHHHHHHHHh-hCCCCceEEEEecCCCCccccccccc-ceecCC-eEEEecC
Q 005138 124 VSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRL-FSPRKTTLMFVIRDKTRTPLENLEPV-LREDIQ-KIWDSVP 197 (712)
Q Consensus 124 la~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L-~~~~g~tiL~VtHDl~~~~~~~~~~~-ll~~~G-~I~~~g~ 197 (712)
+-+++++|||+.++|+.. +...++.+..+ .+ .|.|++ +|++..+...|+++. ++.+ | +++..++
T Consensus 141 ~~di~ildeel~~~D~~~------~~k~~~~l~~~~~~-~g~ti~--sh~~~~~~~l~~~i~~~L~~-G~~~~~~~~ 207 (392)
T 1ni3_A 141 IRDLSIIVDELLIKDAEF------VEKHLEGLRKITSR-GANTLE--MKAKKEEQAIIEKVYQYLTE-TKQPIRKGD 207 (392)
T ss_dssp HHHHHHHHHHHHHHHHHH------HHHHHHHHHHTTCC-SSCSSS--HHHHHHHHHHHHHHHHHHHT-TCSCGGGSC
T ss_pred chhhhhchhhhHHHHHHH------HHHHHHHHHHHHHh-cCCccc--cccHHHHHHHHHHHHHHhcc-CCceeecCC
Confidence 349999999999999988 88888888887 44 477764 999988888888887 7777 8 7766554
No 127
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.49 E-value=6.1e-08 Score=107.11 Aligned_cols=127 Identities=16% Similarity=0.204 Sum_probs=74.1
Q ss_pred cccccccccccccccccEEEEEcCCCCChhHHHHHHhccc-------cCccCCCCCeeeccC--CeeeccccCCC-----
Q 005138 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN-------FREMDAFKGRSQTTK--GIWMARCAGIE----- 90 (712)
Q Consensus 25 ~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~-------f~~m~p~sG~~~~t~--gi~~~~~~~~~----- 90 (712)
+++++++..+. +|+|+|+||||||||||+|+|.. |.+..|..|.+.... .+.+....+..
T Consensus 148 ~~i~lelk~g~------~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~ 221 (416)
T 1udx_A 148 RRLRLELMLIA------DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASE 221 (416)
T ss_dssp EEEEEEECCSC------SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGG
T ss_pred eeeeeEEcCCC------EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhh
Confidence 57788888887 99999999999999999999984 223344444322211 01111111110
Q ss_pred ----------------ccchhccccCCCcccccchhhHHHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHH
Q 005138 91 ----------------PCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTV 151 (712)
Q Consensus 91 ----------------~~~~v~d~~g~~~~~r~~~~~~ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v 151 (712)
..+.++|.. ..........++|++.+|++++ .+|++ +.+|+.. . ..
T Consensus 222 ~~~L~~~fl~~~era~~lL~vvDls----~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~------~-~~ 286 (416)
T 1udx_A 222 GKGLGLEFLRHIARTRVLLYVLDAA----DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLE------E-EA 286 (416)
T ss_dssp SCCSCHHHHHHHTSSSEEEEEEETT----SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSC------H-HH
T ss_pred hhhhhHHHHHHHHHHHhhhEEeCCc----cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhh------H-HH
Confidence 001111211 1112233456899999999887 56666 6888875 3 34
Q ss_pred HHHHHHhhCCCCceEEEEecC
Q 005138 152 FQVMMRLFSPRKTTLMFVIRD 172 (712)
Q Consensus 152 ~e~l~~L~~~~g~tiL~VtHD 172 (712)
++.+.+..++.+.+++++|--
T Consensus 287 ~~~l~~~l~~~g~~vi~iSA~ 307 (416)
T 1udx_A 287 VKALADALAREGLAVLPVSAL 307 (416)
T ss_dssp HHHHHHHHHTTTSCEEECCTT
T ss_pred HHHHHHHHHhcCCeEEEEECC
Confidence 444444444447777776643
No 128
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.44 E-value=2.5e-08 Score=111.77 Aligned_cols=42 Identities=21% Similarity=0.169 Sum_probs=36.0
Q ss_pred cccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeee
Q 005138 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ 76 (712)
Q Consensus 25 ~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~ 76 (712)
+++++++..|+ +++|+|+||||||||+++|+|+. .+..|++.
T Consensus 284 ~~Isl~i~~Ge------VI~LVGpNGSGKTTLl~~LAgll----~~~~G~V~ 325 (503)
T 2yhs_A 284 EPLNVEGKAPF------VILMVGVNGVGKTTTIGKLARQF----EQQGKSVM 325 (503)
T ss_dssp CCCCCCSCTTE------EEEEECCTTSSHHHHHHHHHHHH----HHTTCCEE
T ss_pred CCceeeccCCe------EEEEECCCcccHHHHHHHHHHHh----hhcCCeEE
Confidence 46777777777 99999999999999999999998 77778754
No 129
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.42 E-value=1.2e-07 Score=106.26 Aligned_cols=43 Identities=16% Similarity=0.034 Sum_probs=39.7
Q ss_pred ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCee
Q 005138 22 SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS 75 (712)
Q Consensus 22 ~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~ 75 (712)
.+++++++++.. + +++|+|||||||||||++|+|+. +|++|++
T Consensus 18 ~~l~~vsl~i~~-e------~~~liG~nGsGKSTLl~~l~Gl~----~p~~G~I 60 (483)
T 3euj_A 18 NGFFARTFDFDE-L------VTTLSGGNGAGKSTTMAGFVTAL----IPDLTLL 60 (483)
T ss_dssp TTEEEEEEECCS-S------EEEEECCTTSSHHHHHHHHHHHH----CCCTTTC
T ss_pred ccccceEEEEcc-c------eEEEECCCCCcHHHHHHHHhcCC----CCCCCEE
Confidence 468999999999 8 99999999999999999999999 8888874
No 130
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.39 E-value=2e-07 Score=102.45 Aligned_cols=130 Identities=12% Similarity=0.097 Sum_probs=66.8
Q ss_pred ccccEEEEEcCCCCChhHHHHHH--hccccCccCCCCCeeeccCC-eeeccccCCCcc--chhccccCCCccc------c
Q 005138 38 LSYAVVSIMGPQSSGKSTLLNHL--FGTNFREMDAFKGRSQTTKG-IWMARCAGIEPC--TLIMDLEGTDGRE------R 106 (712)
Q Consensus 38 ~~g~ivaIiGpNGSGKSTLLn~L--~Gl~f~~m~p~sG~~~~t~g-i~~~~~~~~~~~--~~v~d~~g~~~~~------r 106 (712)
.+|++++|+||+|||||||++.| .+.. +++.|. ..++ +++......... .......|..... .
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~----p~~~Gg--~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~ 249 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQI----PLDIGG--GEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAY 249 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTS----CGGGTC--CSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEE
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhcc----CcccCC--CCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEE
Confidence 45669999999999999999955 4555 454442 0111 333322111000 0001111221100 0
Q ss_pred c-chhhHHHHHHHHHHHHHH-----HHhhhccccCCCchhhhh-C-----hhhHHHHHHHHHHhhCCCCceEEEEecCC
Q 005138 107 G-EDDTAFEKQSALFALAVS-----DIVLINMWCHDIGREQAA-N-----KPLLKTVFQVMMRLFSPRKTTLMFVIRDK 173 (712)
Q Consensus 107 ~-~~~~~ferQrv~~A~Ala-----~iLlLDEP~~~LD~~~~a-~-----~~l~~~v~e~l~~L~~~~g~tiL~VtHDl 173 (712)
. ......+.+.+.-+..+. +++++|+|++.+++.... + ......++..++++.++.|+|||+|+|..
T Consensus 250 ~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~ 328 (400)
T 3lda_A 250 ARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVV 328 (400)
T ss_dssp EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred eccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeec
Confidence 0 000111122222222222 789999999988864310 1 11226677888888777799999999984
No 131
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.35 E-value=3.3e-08 Score=104.84 Aligned_cols=55 Identities=18% Similarity=0.104 Sum_probs=45.9
Q ss_pred cEEEEeeeeeecccccccccccc-------------------ccccccccccEEEEEcCCCCChhHHHHHHhccccCccC
Q 005138 9 STQLIDGDGTFNVSGIEHFIKEV-------------------KLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMD 69 (712)
Q Consensus 9 ~I~l~~l~k~y~~~~L~~v~~~i-------------------~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~ 69 (712)
+|++.++++.|.. +++++++.+ ..|+ ++||+||||||||||+++|.|+. .
T Consensus 37 ~i~~~~v~~~y~~-~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~------iigI~G~~GsGKSTl~~~L~~~l----~ 105 (308)
T 1sq5_A 37 DLSLEEVAEIYLP-LSRLLNFYISSNLRRQAVLEQFLGTNGQRIPY------IISIAGSVAVGKSTTARVLQALL----S 105 (308)
T ss_dssp TCCHHHHHHTHHH-HHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCE------EEEEEECTTSSHHHHHHHHHHHH----T
T ss_pred ccchHhHHHHHHH-HHHHHHHHHhhhhhHHHHHHHHhccCCCCCCE------EEEEECCCCCCHHHHHHHHHHHH----h
Confidence 5888999999953 678888887 4444 99999999999999999999998 5
Q ss_pred --CCCCe
Q 005138 70 --AFKGR 74 (712)
Q Consensus 70 --p~sG~ 74 (712)
|++|+
T Consensus 106 ~~~~~G~ 112 (308)
T 1sq5_A 106 RWPEHRR 112 (308)
T ss_dssp TSTTCCC
T ss_pred hCCCCCe
Confidence 66665
No 132
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.33 E-value=2.9e-08 Score=106.77 Aligned_cols=57 Identities=19% Similarity=0.091 Sum_probs=49.7
Q ss_pred cEEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCee
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS 75 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~ 75 (712)
+|++.++++.|+ ..+++++++++..|+ +++|+||||||||||+|+|+|+. .|+.|++
T Consensus 29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~------~v~i~G~~GaGKSTLl~~l~g~~----~~~~g~v 86 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLIDAVLPQTGRAI------RVGITGVPGVGKSTTIDALGSLL----TAAGHKV 86 (337)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCCCSE------EEEEECCTTSCHHHHHHHHHHHH----HHTTCCE
T ss_pred HHeeCCcccccChHHHHHhCCcccCCCe------EEEEECCCCCCHHHHHHHHHHhh----hhCCCEE
Confidence 578888998884 446899999999888 99999999999999999999998 6777763
No 133
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.28 E-value=7e-07 Score=95.25 Aligned_cols=42 Identities=14% Similarity=0.204 Sum_probs=34.9
Q ss_pred HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCc
Q 005138 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRT 176 (712)
Q Consensus 126 ~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~ 176 (712)
+++|+|||++ ||+.. ...+++.+.+.. .++++|+++|+...+
T Consensus 136 ~vlilDE~~~-L~~~~------~~~L~~~le~~~--~~~~~Il~t~~~~~l 177 (354)
T 1sxj_E 136 KCVIINEANS-LTKDA------QAALRRTMEKYS--KNIRLIMVCDSMSPI 177 (354)
T ss_dssp EEEEEECTTS-SCHHH------HHHHHHHHHHST--TTEEEEEEESCSCSS
T ss_pred eEEEEeCccc-cCHHH------HHHHHHHHHhhc--CCCEEEEEeCCHHHH
Confidence 5999999999 99887 788888888753 378999999998654
No 134
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.25 E-value=2.8e-07 Score=93.99 Aligned_cols=37 Identities=22% Similarity=0.277 Sum_probs=25.9
Q ss_pred ccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccc
Q 005138 22 SGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 22 ~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.+|++++|++..|. ++||+||||||||||+++|.|+.
T Consensus 13 ~~l~~isl~i~~g~------iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 13 LGTENLYFQSMRPF------LIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp ----------CCSE------EEEEECSTTSSHHHHHHHHHHHH
T ss_pred eeecceeccCCCCE------EEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999998 99999999999999999999976
No 135
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.19 E-value=7.8e-07 Score=86.66 Aligned_cols=70 Identities=10% Similarity=0.053 Sum_probs=58.2
Q ss_pred chhhHHHHHHHHHHHHHH-------HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccc
Q 005138 108 EDDTAFEKQSALFALAVS-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLEN 180 (712)
Q Consensus 108 ~~~~~ferQrv~~A~Ala-------~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~ 180 (712)
...+.+|||++++|++++ +++|||||+++||+.. ...+.+.+.++.+ +.++|+|||+... ...|
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~------~~~~~~~l~~~~~--~~~~ivith~~~~-~~~a 133 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDAN------VKRVADLIKESSK--ESQFIVITLRDVM-MANA 133 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHH------HHHHHHHHHHHTT--TSEEEEECSCHHH-HTTC
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHH------HHHHHHHHHHhcc--CCEEEEEEecHHH-HHhC
Confidence 455788999999999997 6999999999999998 9999999998854 5689999998754 3457
Q ss_pred ccccce
Q 005138 181 LEPVLR 186 (712)
Q Consensus 181 ~~~~ll 186 (712)
++++.+
T Consensus 134 d~i~~v 139 (173)
T 3kta_B 134 DKIIGV 139 (173)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 776544
No 136
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.18 E-value=1.5e-06 Score=87.41 Aligned_cols=46 Identities=11% Similarity=0.143 Sum_probs=30.7
Q ss_pred HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCC
Q 005138 126 DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTR 175 (712)
Q Consensus 126 ~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~ 175 (712)
+++++|+++.-++.. +.....++..+.++.++.|+|+|+++|....
T Consensus 130 ~~vviD~~~~l~~~~----~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~ 175 (247)
T 2dr3_A 130 KRVVVDSVTTLYINK----PAMARSIILQLKRVLAGTGCTSIFVSQVSVG 175 (247)
T ss_dssp CEEEEETSGGGTTTC----GGGHHHHHHHHHHHHHHTTCEEEEEEECC--
T ss_pred CEEEECCchHhhcCC----HHHHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 789999999766221 1124555555666655569999999998754
No 137
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.15 E-value=5.1e-07 Score=102.38 Aligned_cols=66 Identities=15% Similarity=0.118 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHH-----HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccccccccceec
Q 005138 114 EKQSALFALAVS-----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLRED 188 (712)
Q Consensus 114 erQrv~~A~Ala-----~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~~~ll~~ 188 (712)
|+||+++|++++ ++||+||||+|||+.. ...+.+.+.++.+ |.|||+||||++.+. .|++++++.+
T Consensus 402 ~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~------~~~i~~~l~~~~~--~~~vi~itH~~~~~~-~~d~~~~~~~ 472 (517)
T 4ad8_A 402 ELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAA------AIAVAEQLSRLAD--TRQVLVVTHLAQIAA-RAHHHYKVEK 472 (517)
T ss_dssp HHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHH------HHHHHHHHHHHHH--HSEEEEECCCHHHHH-HSSEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHH------HHHHHHHHHHHhC--CCEEEEEecCHHHHH-hCCEEEEEec
Confidence 999999999998 4999999999999998 9999999999864 899999999998765 5999988865
No 138
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.15 E-value=4.9e-07 Score=95.47 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=27.7
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccccCccCCCCCe
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGR 74 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~ 74 (712)
++.+++|+|||||||||+++.|+|.. .+.+|.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l----~~~~G~ 135 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS----MLEKHK 135 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH----HHTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH----HHhcCC
Confidence 45699999999999999999999988 555673
No 139
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.11 E-value=8.5e-07 Score=93.52 Aligned_cols=108 Identities=18% Similarity=0.082 Sum_probs=58.8
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccccCCCccchhccccCCCcccccchhhHHHHHHHH
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSAL 119 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~~~~~~~~~v~d~~g~~~~~r~~~~~~ferQrv~ 119 (712)
+++++|+|+||+||||++..|+|.. .+..|++.....- ..+.........+.+..|++....+......+.++.+
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~----~~~~~~v~l~~~d-~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~ 172 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYY----KGKGRRPLLVAAD-TQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRV 172 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH----HHTTCCEEEEECC-SSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH----HHcCCeEEEecCC-cccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHH
Confidence 3499999999999999999999998 4554542211000 0000000000001111222211111011112335667
Q ss_pred HHHHHH---HHhhhccc-cCCCchhhhhChhhHHHHHHHHHHh
Q 005138 120 FALAVS---DIVLINMW-CHDIGREQAANKPLLKTVFQVMMRL 158 (712)
Q Consensus 120 ~A~Ala---~iLlLDEP-~~~LD~~~~a~~~l~~~v~e~l~~L 158 (712)
++.+.. |++|+|+| +.++|... ...+..+...+
T Consensus 173 l~~~~~~~~D~viiDtpp~~~~d~~~------~~~l~~~~~~~ 209 (295)
T 1ls1_A 173 EEKARLEARDLILVDTAGRLQIDEPL------MGELARLKEVL 209 (295)
T ss_dssp HHHHHHHTCCEEEEECCCCSSCCHHH------HHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEeCCCCccccHHH------HHHHHHHhhhc
Confidence 777753 99999999 88898765 56666555544
No 140
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.11 E-value=2.4e-06 Score=92.18 Aligned_cols=122 Identities=25% Similarity=0.229 Sum_probs=72.2
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccccCCCccchhccccCCCcccccchhhHHHHHHHH
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSAL 119 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~~~~~~~~~v~d~~g~~~~~r~~~~~~ferQrv~ 119 (712)
...++|+|++|+|||||+|.|.|..+. ..+...++.+..............++|..|..... ......+++|++.
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~~~----~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~~~~ 241 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAKPE----IASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRP-ISERNEIEKQAIL 241 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSCCE----EECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSC-STTSCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCc----cCCCCCeeeceeEEEEEecCceEEEEeCCCccccc-hhhhhHHHHHHHH
Confidence 348999999999999999999997621 11111123332221110011234566887764422 1222445566554
Q ss_pred HHHHH-H--HHhhhc-cccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEe--cCCCC
Q 005138 120 FALAV-S--DIVLIN-MWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVI--RDKTR 175 (712)
Q Consensus 120 ~A~Al-a--~iLlLD-EP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~Vt--HDl~~ 175 (712)
+.+. + -++++| ++..+++... ...+++.+.++.. +..+|+|. ||+..
T Consensus 242 -~~~~~ad~illV~D~s~~~~~~~~~------~~~~~~~i~~~~~--~~piilV~NK~Dl~~ 294 (357)
T 2e87_A 242 -ALRYLGNLIIYIFDPSEHCGFPLEE------QIHLFEEVHGEFK--DLPFLVVINKIDVAD 294 (357)
T ss_dssp -GGGGTCSEEEEEECTTCTTSSCHHH------HHHHHHHHHHHTT--TSCEEEEECCTTTCC
T ss_pred -HHHhcCCEEEEEEeCCccccCCHHH------HHHHHHHHHHhcC--CCCEEEEEECcccCC
Confidence 3332 2 466789 7777777766 6677777776653 67888888 77743
No 141
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.09 E-value=9e-07 Score=89.20 Aligned_cols=36 Identities=17% Similarity=0.188 Sum_probs=22.6
Q ss_pred cccccccccccccccccccEEEEEcCCCCChhHHHHHHh-ccc
Q 005138 23 GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLF-GTN 64 (712)
Q Consensus 23 ~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~-Gl~ 64 (712)
...++++++..|+ +++|+||||||||||+++|. |+.
T Consensus 16 ~~~~~sl~v~~G~------ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 16 TQGPGSMLKSVGV------ILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ------CCEECCC------EEEEECSCC----CHHHHHHC---
T ss_pred ccCCCCcccCCCC------EEEEECCCCCCHHHHHHHHHhcCC
Confidence 4679999999999 99999999999999999999 986
No 142
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.08 E-value=1.3e-06 Score=85.62 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
++++|+||||||||||+++|.|+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 399999999999999999999986
No 143
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.06 E-value=2.6e-07 Score=93.98 Aligned_cols=50 Identities=22% Similarity=0.165 Sum_probs=39.5
Q ss_pred ccEEEEeeeeeeccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCe
Q 005138 8 CSTQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGR 74 (712)
Q Consensus 8 ~~I~l~~l~k~y~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~ 74 (712)
..|++.|+...|+. + +++.. + +++|+|||||||||||++|+|+. .|++|+
T Consensus 8 ~~l~l~~~~~~~~~----~--~~~~~-~------~~~i~GpnGsGKSTll~~i~g~~----~~~~G~ 57 (227)
T 1qhl_A 8 RSLTLINWNGFFAR----T--FDLDE-L------VTTLSGGNGAGKSTTMAAFVTAL----IPDLTL 57 (227)
T ss_dssp EEEEEEEETTEEEE----E--ECHHH-H------HHHHHSCCSHHHHHHHHHHHHHH----SCCTTT
T ss_pred eEEEEEeeecccCC----E--EEEcC-c------EEEEECCCCCCHHHHHHHHhccc----ccCCCe
Confidence 36888888776642 3 34443 4 89999999999999999999999 787775
No 144
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.02 E-value=4.2e-06 Score=81.56 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=22.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
.++|+|+||||||||+|.+.|..|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 789999999999999999999885
No 145
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.01 E-value=1.2e-06 Score=90.41 Aligned_cols=51 Identities=18% Similarity=0.123 Sum_probs=34.7
Q ss_pred ccEEEEee-eeee-c-ccccccccccccc---ccccccccEEEEEcCCCCChhHHHHHHhccc
Q 005138 8 CSTQLIDG-DGTF-N-VSGIEHFIKEVKL---SDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 8 ~~I~l~~l-~k~y-~-~~~L~~v~~~i~~---ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+++++.|+ ++.| + ..+|+++++++.. |. +++|+|++||||||+.++|++..
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~------~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGR------SMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTC------CEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCC------EEEEECCCCCCHHHHHHHHHHhc
Confidence 37999999 9999 4 3479999999998 88 99999999999999999999865
No 146
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.01 E-value=2e-06 Score=83.88 Aligned_cols=24 Identities=46% Similarity=0.729 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.+++|+||||||||||+++|.|+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 489999999999999999999988
No 147
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.98 E-value=2.3e-06 Score=84.59 Aligned_cols=25 Identities=44% Similarity=0.656 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccc
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
|.+++|+||||||||||+|+|.|+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4599999999999999999999987
No 148
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.98 E-value=2e-06 Score=85.40 Aligned_cols=26 Identities=38% Similarity=0.441 Sum_probs=24.4
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccc
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+|++++|+||||||||||+++|.|+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45599999999999999999999998
No 149
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.96 E-value=5.9e-06 Score=79.61 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=28.3
Q ss_pred cccccccccccccccccEEEEEcCCCCChhHHHHHHhccc
Q 005138 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 25 ~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+++++++..| +++|+||||||||||+++|.++.
T Consensus 18 ~~~~~~~~~g-------~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 18 KKVVIPFSKG-------FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SCEEEECCSS-------EEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccEEEecCCC-------cEEEECCCCCCHHHHHHHHHHHH
Confidence 5666666654 79999999999999999999988
No 150
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.87 E-value=1.8e-06 Score=95.50 Aligned_cols=34 Identities=24% Similarity=0.278 Sum_probs=29.4
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeee
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ 76 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~ 76 (712)
++.+++|+|||||||||||++|.|.. +|.+|++.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l----~~~~g~I~ 199 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQEL----NSSERNIL 199 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH----CCTTSCEE
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhc----CCCCCEEE
Confidence 44599999999999999999999998 67777743
No 151
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.87 E-value=4.9e-06 Score=87.79 Aligned_cols=33 Identities=21% Similarity=0.182 Sum_probs=26.2
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeee
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ 76 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~ 76 (712)
+++++|+||||||||||||+|.|+. .|++|++.
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~----~~~~G~i~ 201 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGL----KLRVSEVS 201 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTC----CCC-----
T ss_pred CCeEEEECCCCCcHHHHHHHhcccc----ccccccee
Confidence 3499999999999999999999999 88888754
No 152
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.87 E-value=2.2e-05 Score=84.69 Aligned_cols=34 Identities=29% Similarity=0.633 Sum_probs=25.0
Q ss_pred cccccccccccccccccccEEEEEcCCCCChhHHHHHHhcccc
Q 005138 23 GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 23 ~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
+|+++++++. .|+|+|++|||||||||.|.|..|
T Consensus 26 ~l~~i~~~lp---------~I~vvG~~~sGKSSLln~l~g~~~ 59 (360)
T 3t34_A 26 ALPTLWDSLP---------AIAVVGGQSSGKSSVLESIVGKDF 59 (360)
T ss_dssp CC----CCCC---------EEEEECBTTSSHHHHHHHHHTSCC
T ss_pred ccccccccCC---------EEEEECCCCCcHHHHHHHHhCCCc
Confidence 4555555554 699999999999999999999653
No 153
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.84 E-value=3.4e-06 Score=95.52 Aligned_cols=43 Identities=16% Similarity=0.086 Sum_probs=36.9
Q ss_pred cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCee
Q 005138 23 GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS 75 (712)
Q Consensus 23 ~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~ 75 (712)
+++++++.+..|. +++|+||||||||||||+|.|+. +|++|.+
T Consensus 249 ~l~~l~~~v~~g~------~i~I~GptGSGKTTlL~aL~~~i----~~~~gii 291 (511)
T 2oap_1 249 VLAYLWLAIEHKF------SAIVVGETASGKTTTLNAIMMFI----PPDAKVV 291 (511)
T ss_dssp HHHHHHHHHHTTC------CEEEEESTTSSHHHHHHHHGGGS----CTTCCEE
T ss_pred HHHHHHHHHhCCC------EEEEECCCCCCHHHHHHHHHhhC----CCCCCEE
Confidence 4567777788887 89999999999999999999999 7777753
No 154
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.83 E-value=1.1e-05 Score=78.77 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=22.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
.++|+|+||||||||+|.|.|..|
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~ 30 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEF 30 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 689999999999999999999875
No 155
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.79 E-value=1e-05 Score=87.45 Aligned_cols=33 Identities=27% Similarity=0.418 Sum_probs=27.6
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccccCccC-CCCCeee
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTNFREMD-AFKGRSQ 76 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~-p~sG~~~ 76 (712)
|++++|+||||||||||+|+|.|.. . |.+|.+.
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~----~~~~~G~I~ 248 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQ----NEILTNDVS 248 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCS----SCCCCC---
T ss_pred CCEEEEECCCCccHHHHHHHHhccc----cccccCCcc
Confidence 4499999999999999999999998 7 8888743
No 156
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.78 E-value=9.2e-06 Score=78.70 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccc
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
|++++|+||||||||||+++|+|..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcc
Confidence 3399999999999999999999964
No 157
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.77 E-value=1.6e-05 Score=85.74 Aligned_cols=27 Identities=37% Similarity=0.503 Sum_probs=22.9
Q ss_pred ccccEEEEEcCCCCChhHHHHHHhccc
Q 005138 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 38 ~~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.+|.++.|.||+|||||||+..++...
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456699999999999999988887654
No 158
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.76 E-value=1e-05 Score=78.35 Aligned_cols=27 Identities=15% Similarity=0.330 Sum_probs=24.6
Q ss_pred ccccEEEEEcCCCCChhHHHHHHhccc
Q 005138 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 38 ~~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.+|++++|+||||||||||+++|.|..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 356699999999999999999999986
No 159
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.76 E-value=1.1e-05 Score=78.99 Aligned_cols=24 Identities=25% Similarity=0.552 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.+++|+||||||||||+++|.|..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 399999999999999999999987
No 160
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.75 E-value=1.3e-05 Score=88.51 Aligned_cols=71 Identities=13% Similarity=0.037 Sum_probs=59.4
Q ss_pred hhHHHHHHHHHHHHHH-------HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCccccccc
Q 005138 110 DTAFEKQSALFALAVS-------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLE 182 (712)
Q Consensus 110 ~~~ferQrv~~A~Ala-------~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~~~~ 182 (712)
.+.+|+|++++|++++ +++|||||+++||+.. ...+.+.+.++... +.++|+|||+... ...|++
T Consensus 334 lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~------~~~l~~~l~~~~~~-~~~~ii~th~~~~-~~~~d~ 405 (430)
T 1w1w_A 334 LSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITN------VQRIAAYIRRHRNP-DLQFIVISLKNTM-FEKSDA 405 (430)
T ss_dssp SCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHH------HHHHHHHHHHHCBT-TBEEEEECSCHHH-HTTCSE
T ss_pred CCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHH------HHHHHHHHHHHhcC-CCEEEEEECCHHH-HHhCCE
Confidence 3566999999999998 5999999999999998 99999999988654 8899999999654 345888
Q ss_pred ccceec
Q 005138 183 PVLRED 188 (712)
Q Consensus 183 ~~ll~~ 188 (712)
++.+..
T Consensus 406 ~~~~~~ 411 (430)
T 1w1w_A 406 LVGVYR 411 (430)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 776653
No 161
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.72 E-value=2e-05 Score=85.51 Aligned_cols=73 Identities=4% Similarity=-0.001 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHH------HHHH----HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCCcccc
Q 005138 110 DTAFEKQSALFA------LAVS----DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLE 179 (712)
Q Consensus 110 ~~~ferQrv~~A------~Ala----~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~~~~~ 179 (712)
.+.+|+||+++| ++++ ++||||||+++||+.. ...+.+.+.++.. +.+||+|||+.. +...
T Consensus 281 lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~------~~~l~~~l~~~~~--~~~vi~~th~~~-~~~~ 351 (371)
T 3auy_A 281 LSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENR------RAKLAEIFRKVKS--IPQMIIITHHRE-LEDV 351 (371)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHH------HHHHHHHHHHCCS--CSEEEEEESCGG-GGGG
T ss_pred cCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHH------HHHHHHHHHHhcc--CCeEEEEEChHH-HHhh
Confidence 356699998654 4444 4899999999999998 9999999988743 468999999986 4667
Q ss_pred cccccceecCCe
Q 005138 180 NLEPVLREDIQK 191 (712)
Q Consensus 180 ~~~~~ll~~~G~ 191 (712)
|++++++...|.
T Consensus 352 ~d~~~~l~k~~~ 363 (371)
T 3auy_A 352 ADVIINVKKDGN 363 (371)
T ss_dssp CSEEEEEEESSS
T ss_pred CCEEEEEEecCC
Confidence 888888875454
No 162
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.71 E-value=5.8e-06 Score=87.70 Aligned_cols=33 Identities=21% Similarity=0.173 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeee
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ 76 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~ 76 (712)
|++++|+||||+|||||+|+|.|.. .|.+|.+.
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~----~~~~G~I~ 205 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPEL----GLRTNEIS 205 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--------------
T ss_pred CCEEEEECCCCCCHHHHHHHhcccc----ccccccee
Confidence 3499999999999999999999998 78888743
No 163
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.70 E-value=9.6e-06 Score=82.46 Aligned_cols=31 Identities=29% Similarity=0.472 Sum_probs=27.1
Q ss_pred ccEEEEEcCCCCChhHHHHHHh---ccccCccCCCCCe
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLF---GTNFREMDAFKGR 74 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~---Gl~f~~m~p~sG~ 74 (712)
+.+++|+||||||||||+++|+ |+. .|++|+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~----~~~~G~ 60 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQ----HLSSGH 60 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCC----CEEHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe----EecHHH
Confidence 4599999999999999999999 988 566665
No 164
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.67 E-value=3.2e-05 Score=78.02 Aligned_cols=114 Identities=17% Similarity=0.207 Sum_probs=56.2
Q ss_pred EEEEEcCCCCChhHHHHHHhccccCccCCCCCee--eccCCeeeccccCCCccchhccccCCCcccccchhhHHHHHHHH
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRS--QTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSAL 119 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~--~~t~gi~~~~~~~~~~~~~v~d~~g~~~~~r~~~~~~ferQrv~ 119 (712)
.|+|+|++|+|||||+|.|.|..+ +.+|.. .++..............+.+.|..|+........ ..++ .
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~----~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~--~~~~---~ 101 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV----FHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNA--ETSK---E 101 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC----SCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CH--HHHH---H
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc----CccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHH--HHHH---H
Confidence 689999999999999999999873 333332 1222111100000122456779888765432211 1111 1
Q ss_pred HHHHHH------HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCC--CCceEEEEec
Q 005138 120 FALAVS------DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP--RKTTLMFVIR 171 (712)
Q Consensus 120 ~A~Ala------~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~--~g~tiL~VtH 171 (712)
+...+. +++|+..+.+.++... . ..++.+.+.+.. ...++|+++|
T Consensus 102 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~------~-~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 102 IIRCILLTSPGPHALLLVVPLGRYTEEE------H-KATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp HHHHHHHTTTCCSEEEEEEETTCCSSHH------H-HHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred HHHHHHhcCCCCcEEEEEeeCCCCCHHH------H-HHHHHHHHHhhhhccceEEEEEeC
Confidence 111211 6777777766655532 2 233333332211 1357777787
No 165
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.66 E-value=2e-05 Score=83.13 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=28.0
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeee
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQ 76 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~ 76 (712)
+++++|+||||||||||+|+|. +. .|.+|++.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~----~~~~G~i~ 196 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE----ELRTQEVS 196 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC----CCCCSCC-
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh----hCcccccc
Confidence 4499999999999999999999 87 78888854
No 166
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.62 E-value=2.4e-05 Score=82.91 Aligned_cols=32 Identities=19% Similarity=0.115 Sum_probs=27.0
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccccCccCCCCCe
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGR 74 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~ 74 (712)
++++++|+|||||||||+++.|+|.. .+..|+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l----~~~g~k 134 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF----VDEGKS 134 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH----HHTTCC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH----HhcCCE
Confidence 34599999999999999999999998 555444
No 167
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.58 E-value=2.6e-05 Score=76.75 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=23.4
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccc
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+|.+++|+||||||||||+++|.|..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 34499999999999999999999976
No 168
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.55 E-value=2.1e-05 Score=77.29 Aligned_cols=35 Identities=26% Similarity=0.135 Sum_probs=29.0
Q ss_pred ccccccccccccccccccEEEEEcCCCCChhHHHHHHhccc
Q 005138 24 IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 24 L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.+...+....|. +++|+||||||||||+++|.|..
T Consensus 15 ~~~~~~~~~~g~------~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 15 VDRQRLLDQKGC------VIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp HHHHHHHTSCCE------EEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCe------EEEEECCCCCCHHHHHHHHHHHH
Confidence 345555555555 99999999999999999999988
No 169
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.52 E-value=2.3e-05 Score=80.39 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=27.8
Q ss_pred ccEEEEEcCCCCChhHHHHHHh---ccccCccCCCCCee
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLF---GTNFREMDAFKGRS 75 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~---Gl~f~~m~p~sG~~ 75 (712)
+.+++|+||||||||||+++|+ |+. .+++|..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~----~~d~g~i 61 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWR----LLDSGAI 61 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCE----EEEHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCC----cCCCCce
Confidence 4499999999999999999999 988 5777764
No 170
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.49 E-value=5.1e-05 Score=75.29 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=23.9
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccc
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+|.+++|+||||||||||++.|.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45599999999999999999999987
No 171
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.48 E-value=4.2e-05 Score=77.07 Aligned_cols=25 Identities=40% Similarity=0.364 Sum_probs=22.8
Q ss_pred cccEEEEEcCCCCChhHHHHHHhcc
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGT 63 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl 63 (712)
+|.+++|.|+||||||||+++|.|.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4459999999999999999999987
No 172
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.47 E-value=4.9e-05 Score=74.64 Aligned_cols=36 Identities=19% Similarity=0.173 Sum_probs=24.4
Q ss_pred cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccc
Q 005138 23 GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 23 ~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+++++++++..+. +++|+|++||||||+.+.|++..
T Consensus 14 ~~~~~~~~~~~~~------~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 14 GTENLYFQSNAMV------RIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ----------CCC------EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceeEecCCCC------EEEEEcCCCCCHHHHHHHHHHHc
Confidence 5899999999888 99999999999999999999765
No 173
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.40 E-value=7.6e-05 Score=82.42 Aligned_cols=45 Identities=22% Similarity=0.311 Sum_probs=34.4
Q ss_pred cEEEEeeeeeeccccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccc
Q 005138 9 STQLIDGDGTFNVSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 9 ~I~l~~l~k~y~~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.|.+.|. +.|.. ... +++..+. +++|+|||||||||||++|.|+.
T Consensus 6 ~l~~~~~-~~~~~--~~~--~~~~~~~------~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 6 GLELSNF-KSYRG--VTK--VGFGESN------FTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp EEEEESC-SSCCS--EEE--EECTTCS------EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEeCE-EEECC--cee--EEecCCC------EEEEECCCCCCHHHHHHHHHhhh
Confidence 4778888 67743 112 3344455 99999999999999999999998
No 174
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.38 E-value=8.8e-05 Score=73.65 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=24.2
Q ss_pred ccccEEEEEcCCCCChhHHHHHHhccc
Q 005138 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 38 ~~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.+|.+++|+||||||||||++.|.+..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 355699999999999999999999876
No 175
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.36 E-value=5.9e-05 Score=74.31 Aligned_cols=26 Identities=42% Similarity=0.409 Sum_probs=23.9
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccc
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
++.+++|+|+||||||||+++|.|..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34599999999999999999999987
No 176
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.35 E-value=6.7e-05 Score=80.02 Aligned_cols=42 Identities=17% Similarity=0.027 Sum_probs=31.0
Q ss_pred cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccc
Q 005138 23 GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 23 ~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.+.++...+..+..+..-.++||+||||||||||+++|.|+.
T Consensus 75 ~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 75 TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 355555555444322333499999999999999999999998
No 177
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.34 E-value=0.00016 Score=78.07 Aligned_cols=27 Identities=37% Similarity=0.460 Sum_probs=24.5
Q ss_pred ccccEEEEEcCCCCChhHHHHHHhccc
Q 005138 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 38 ~~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.+|.++.|.||+|||||||+..+++..
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999999876
No 178
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.34 E-value=7.3e-05 Score=71.05 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.+++|+||+|||||||+++|.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999999986
No 179
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.33 E-value=9.3e-05 Score=70.65 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=23.5
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccc
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
++.+++|+|+||||||||+++|.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 45699999999999999999999865
No 180
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.32 E-value=0.00016 Score=73.85 Aligned_cols=121 Identities=10% Similarity=0.017 Sum_probs=61.2
Q ss_pred EEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccccCCCccchhccccCCCcccccchhhHHHHHHHHHH
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFA 121 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~~~~~~~~~v~d~~g~~~~~r~~~~~~ferQrv~~A 121 (712)
.|+|+|+.|+|||||+|.|.|..+...... ...+|..............+.+.|..|+...... ..++..-.+.
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~~~~~~~--~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~----~~~~~~~~i~ 96 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRRFFSRLG--ATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVS----KTDPGCEERG 96 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCCC-----------CCSCEEEEEEETTEEEEEEECCSCSSTTHH----HHSTTSHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccccCC--CCCccccEEEEEEEECCcEEEEEECCCCCCCCCC----cHHHHHHHHH
Confidence 689999999999999999999873221111 0012222111000011234567798887533211 1122222223
Q ss_pred HHH----H--HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCC--CCceEEEEecCCCC
Q 005138 122 LAV----S--DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSP--RKTTLMFVIRDKTR 175 (712)
Q Consensus 122 ~Al----a--~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~--~g~tiL~VtHDl~~ 175 (712)
+++ - +++|+-...+.+... ...+++.+.+++.. .+.++|+++|-.+.
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~-------~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGRFTAQ-------DQQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTBCCHH-------HHHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred HHHHhcCCCCCEEEEEEeCCCCCHH-------HHHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 333 1 444443333333222 45566777776643 26788899986653
No 181
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.30 E-value=1.6e-05 Score=84.92 Aligned_cols=56 Identities=16% Similarity=0.100 Sum_probs=42.0
Q ss_pred cEEEEeeeeeec-ccccccccccccccc-ccccccEEEEEcCCCCChhHHHHHHhccc
Q 005138 9 STQLIDGDGTFN-VSGIEHFIKEVKLSD-CGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 9 ~I~l~~l~k~y~-~~~L~~v~~~i~~ge-~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
++...+++..|+ ..+++++++.+..|. .|...+.++|+||||+|||||+++|+|..
T Consensus 18 ~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 18 FLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp TTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 456667777774 345778888887651 11233589999999999999999999987
No 182
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.30 E-value=3.4e-05 Score=74.79 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=24.6
Q ss_pred cEEEEEcCCCCChhHHHHHHhccccCccCCC
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTNFREMDAF 71 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~ 71 (712)
++++|+|+||||||||+++|.|+. +|.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~----~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL----RER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH----HHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh----hhc
Confidence 389999999999999999999998 565
No 183
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.28 E-value=7.7e-05 Score=81.27 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=32.2
Q ss_pred cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccc
Q 005138 23 GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 23 ~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+++++++.+..|. +++|+||||||||||+++|+|..
T Consensus 158 ~l~~~~~~i~~~~------~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 158 FLKCMVYNIPKKR------YWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHCCTTCC------EEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHhcccccCCCC------EEEEECCCCCCHHHHHHHHHhhc
Confidence 5677888888888 99999999999999999999965
No 184
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.27 E-value=0.00026 Score=79.39 Aligned_cols=106 Identities=17% Similarity=0.146 Sum_probs=58.4
Q ss_pred EEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccccCCCccchhccccCCCcccccchhhHHHHHHHHHHH
Q 005138 43 VSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALFAL 122 (712)
Q Consensus 43 vaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~~~~~~~~~v~d~~g~~~~~r~~~~~~ferQrv~~A~ 122 (712)
+.|.||+|+|||||+++|+|.. |. + -+.+... +..... .....++.+..|+.
T Consensus 52 vLL~GppGtGKT~Laraia~~~--------~~--~--f~~is~~----------~~~~~~------~g~~~~~~r~lf~~ 103 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEA--------NV--P--FFHISGS----------DFVELF------VGVGAARVRDLFAQ 103 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH--------TC--C--EEEEEGG----------GTTTCC------TTHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHc--------CC--C--eeeCCHH----------HHHHHH------hcccHHHHHHHHHH
Confidence 7899999999999999999865 11 0 0111111 111000 11234567778888
Q ss_pred HHH---HHhhhccccCCCchhh----hhChhhHHHHHHHHHHh---hCCCCceEEEEecCCCCc
Q 005138 123 AVS---DIVLINMWCHDIGREQ----AANKPLLKTVFQVMMRL---FSPRKTTLMFVIRDKTRT 176 (712)
Q Consensus 123 Ala---~iLlLDEP~~~LD~~~----~a~~~l~~~v~e~l~~L---~~~~g~tiL~VtHDl~~~ 176 (712)
|.. .+|++||+.+-....+ +.++.....+.+++..+ ....+..||.+||..+.+
T Consensus 104 A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 104 AKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp HHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred HHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 876 5999999854111000 00111133344444433 223478888999987543
No 185
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.25 E-value=0.00014 Score=76.56 Aligned_cols=27 Identities=41% Similarity=0.676 Sum_probs=24.0
Q ss_pred cccEEEEEcCCCCChhHHHHHHhcccc
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
+..+|+|+|++|+|||||+|.|.|..+
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~ 33 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKI 33 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCc
Confidence 344899999999999999999999874
No 186
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.23 E-value=0.0001 Score=78.19 Aligned_cols=35 Identities=29% Similarity=0.427 Sum_probs=27.9
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc----cCccCCCCCee
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTN----FREMDAFKGRS 75 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~----f~~m~p~sG~~ 75 (712)
.+++|+|+||||||||||+|.|.. ..+..|+.|++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i 43 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEV 43 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCccc
Confidence 489999999999999999999874 22234677773
No 187
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.18 E-value=0.00015 Score=80.67 Aligned_cols=46 Identities=7% Similarity=0.111 Sum_probs=32.8
Q ss_pred HHhhhccccCCCchhh-h-hChhhHHHHHHHHHHhhCCCCceEEEEec
Q 005138 126 DIVLINMWCHDIGREQ-A-ANKPLLKTVFQVMMRLFSPRKTTLMFVIR 171 (712)
Q Consensus 126 ~iLlLDEP~~~LD~~~-~-a~~~l~~~v~e~l~~L~~~~g~tiL~VtH 171 (712)
+++++|+++.-.+... . ........+...++.+.++.|++||+++|
T Consensus 315 ~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sq 362 (454)
T 2r6a_A 315 GMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQ 362 (454)
T ss_dssp CEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 8999999987654321 0 11234567777788887777999999999
No 188
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.11 E-value=0.00035 Score=81.56 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
..++|+|++|+|||||++.|.|..
T Consensus 10 ~~i~IiG~~gaGKTTLl~~L~~~~ 33 (665)
T 2dy1_A 10 RTVALVGHAGSGKTTLTEALLYKT 33 (665)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCChHHHHHHHHHHhc
Confidence 399999999999999999999776
No 189
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.09 E-value=4.1e-05 Score=82.12 Aligned_cols=49 Identities=12% Similarity=0.026 Sum_probs=38.3
Q ss_pred EEEEeeeeeec-cccccccccccccccccccccEEEEEcCCCCChhHHHHHHhccc
Q 005138 10 TQLIDGDGTFN-VSGIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 10 I~l~~l~k~y~-~~~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
++..+..+.|. ..+++++++.+..+. +++|+|++|+|||||+|.|+|..
T Consensus 31 ie~~~~~~~~~~~~~~~~l~~~~~~~~------~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 31 VESRHPRHQALSTQLLDAIMPYCGNTL------RLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp HHCCCHHHHHHHHHHHHHHGGGCSCSE------EEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhcCCchhhhHHHHHHHhCCcccCCCE------EEEEEcCCCCCHHHHHHHHHHHH
Confidence 45556666663 235677777777666 99999999999999999999987
No 190
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.08 E-value=0.00026 Score=75.80 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.+.|.||+|+|||||++.+.+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999887
No 191
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.05 E-value=0.00037 Score=66.40 Aligned_cols=28 Identities=39% Similarity=0.426 Sum_probs=23.7
Q ss_pred ccccEEEEEcCCCCChhHHHHHHhcccc
Q 005138 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 38 ~~g~ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
.++..++|+|++|+|||||+|.|.|..+
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~ 29 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREA 29 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4556899999999999999999999763
No 192
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.03 E-value=0.00014 Score=82.18 Aligned_cols=31 Identities=16% Similarity=0.208 Sum_probs=24.8
Q ss_pred ccccccccccccccccEEEEEcCCCCChhHHHHHHhc
Q 005138 26 HFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFG 62 (712)
Q Consensus 26 ~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~G 62 (712)
.+.+++..+. .+.|.|++||||||+||+|.+
T Consensus 159 pv~ldL~~~p------HlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 159 PVVADLAKMP------HLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEEEGGGSC------SEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcccCc------eEEEECCCCCCHHHHHHHHHH
Confidence 3455555444 899999999999999999875
No 193
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.99 E-value=0.00016 Score=76.92 Aligned_cols=27 Identities=15% Similarity=0.242 Sum_probs=23.9
Q ss_pred ccccEEEEEcCCCCChhHHHHHHhccc
Q 005138 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 38 ~~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
..+..+.|.||+|+|||||++.+++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999999876
No 194
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.99 E-value=0.00022 Score=74.16 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=21.2
Q ss_pred EEEEcCCCCChhHHHHHHhccc
Q 005138 43 VSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 43 vaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
++|+||||||||||+++|+|..
T Consensus 47 vlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHc
Confidence 7999999999999999999987
No 195
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.98 E-value=0.00025 Score=75.46 Aligned_cols=40 Identities=13% Similarity=0.138 Sum_probs=32.2
Q ss_pred cccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCe
Q 005138 25 EHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGR 74 (712)
Q Consensus 25 ~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~ 74 (712)
.++++.+..+. +++|+|+||+||||++..|+|.. .+..|+
T Consensus 96 ~~l~~~~~~~~------vI~ivG~~G~GKTT~~~~LA~~l----~~~g~k 135 (320)
T 1zu4_A 96 YRIDFKENRLN------IFMLVGVNGTGKTTSLAKMANYY----AELGYK 135 (320)
T ss_dssp CCCCCCTTSCE------EEEEESSTTSSHHHHHHHHHHHH----HHTTCC
T ss_pred cCccccCCCCe------EEEEECCCCCCHHHHHHHHHHHH----HHCCCe
Confidence 45666655555 99999999999999999999988 555455
No 196
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.97 E-value=0.00042 Score=65.34 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+.+|+|||||||||||.+|.-..
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999997544
No 197
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=96.96 E-value=0.086 Score=61.73 Aligned_cols=25 Identities=40% Similarity=0.626 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCChhHHHHHHhcccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-.|+|+|+.|+|||||+|.|.|-.+
T Consensus 70 ~~V~VvG~~naGKSSLlNaLlg~~~ 94 (695)
T 2j69_A 70 FRLLVLGDMKRGKSTFLNALIGENL 94 (695)
T ss_dssp EEEEEECCTTSCHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3799999999999999999999763
No 198
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.94 E-value=0.00029 Score=75.81 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=23.9
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccc
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
++.+|+|+|++|||||||+|.|.|..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 36699999999999999999999976
No 199
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.93 E-value=0.00085 Score=74.64 Aligned_cols=119 Identities=18% Similarity=0.247 Sum_probs=54.4
Q ss_pred cEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccccCCCccchhccccCCCcccccchhhHHHHHHHHH
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFEKQSALF 120 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~~~~~~~~~v~d~~g~~~~~r~~~~~~ferQrv~~ 120 (712)
..|+|+|++|+|||||+|.|.|-.+....+..|. +................+.|..|...... ....-.+..+..
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~---t~~~~~~~~~~~~~~~~liDT~G~~~~~~--~~~~~~~~~~~~ 98 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGV---TRDRIYSSAEWLNYDFNLIDTGGIDIGDE--PFLAQIRQQAEI 98 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEEEC--------------CEEEECTTCSSCCEEECCCC--------CCHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCc---ceeEEEEEEEECCceEEEEECCCCCCcch--HHHHHHHHHHHh
Confidence 3799999999999999999999775322222232 11111111111122445678888652111 111112222333
Q ss_pred HHHHHHHhhhccccC-CCchhhhhChhhHHHHHHHHHHhhCCCCceEEEEecCCCC
Q 005138 121 ALAVSDIVLINMWCH-DIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTR 175 (712)
Q Consensus 121 A~Ala~iLlLDEP~~-~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl~~ 175 (712)
+..-++++|+..... ++... -..+.+.+. +.++.+|+|.+-.+.
T Consensus 99 ~~~~ad~il~VvD~~~~~~~~-------d~~l~~~l~----~~~~pvilV~NK~D~ 143 (456)
T 4dcu_A 99 AMDEADVIIFMVNGREGVTAA-------DEEVAKILY----RTKKPVVLAVNKLDN 143 (456)
T ss_dssp HHHHCSEEEEEEESSSCSCHH-------HHHHHHHHT----TCCSCEEEEEECC--
T ss_pred hHhhCCEEEEEEeCCCCCChH-------HHHHHHHHH----HcCCCEEEEEECccc
Confidence 333346666554322 23222 233333332 347788888876664
No 200
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.93 E-value=0.00021 Score=81.50 Aligned_cols=31 Identities=29% Similarity=0.225 Sum_probs=27.2
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccccCccCCCCC
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKG 73 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG 73 (712)
+|++++|+|+||||||||+++|+|.. .|.+|
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L----~~~~G 398 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL----MEMGG 398 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH----HTTCS
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh----cccCC
Confidence 45599999999999999999999998 56655
No 201
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.92 E-value=0.0004 Score=66.61 Aligned_cols=28 Identities=21% Similarity=0.132 Sum_probs=24.3
Q ss_pred cccccEEEEEcCCCCChhHHHHHHhccc
Q 005138 37 GLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 37 g~~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
|.+|.+++|+|++||||||+++.|.+..
T Consensus 2 ~~~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 2 HMRGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3567799999999999999999999976
No 202
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.92 E-value=0.00011 Score=87.10 Aligned_cols=63 Identities=3% Similarity=-0.061 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHH---HHhhhccccC-CCchhhhhChhhHHHHHHHHHHhhCCCCceEEE-EecCCCCcccccc
Q 005138 112 AFEKQSALFALAVS---DIVLINMWCH-DIGREQAANKPLLKTVFQVMMRLFSPRKTTLMF-VIRDKTRTPLENL 181 (712)
Q Consensus 112 ~ferQrv~~A~Ala---~iLlLDEP~~-~LD~~~~a~~~l~~~v~e~l~~L~~~~g~tiL~-VtHDl~~~~~~~~ 181 (712)
..+.++.+++..+. ++||+||+.. ++|... ...++..+..... ...+|++ +||+.+.......
T Consensus 193 ~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~------~~~~l~~l~~~~~-~~~iIl~SAT~~~~~l~~~~~ 260 (773)
T 2xau_A 193 DGMLLREAMEDHDLSRYSCIILDEAHERTLATDI------LMGLLKQVVKRRP-DLKIIIMSATLDAEKFQRYFN 260 (773)
T ss_dssp HHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHH------HHHHHHHHHHHCT-TCEEEEEESCSCCHHHHHHTT
T ss_pred HHHHHHHHhhCccccCCCEEEecCccccccchHH------HHHHHHHHHHhCC-CceEEEEeccccHHHHHHHhc
Confidence 44667777776554 8999999985 787654 4444555555443 2456666 4898754443333
No 203
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.91 E-value=0.00039 Score=68.18 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGT 63 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (712)
+++|+|++||||||+.++|.++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 7999999999999999999984
No 204
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.88 E-value=0.00044 Score=67.95 Aligned_cols=32 Identities=25% Similarity=0.307 Sum_probs=26.4
Q ss_pred cccccccccccccccEEEEEcCCCCChhHHHHHHhccc
Q 005138 27 FIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 27 v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+.-.+..+. +++|+|++|||||||++.|.+..
T Consensus 14 ~~~~~~~~~------~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 14 LVPRGSKTF------IIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCCSCCCE------EEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccccCCCCe------EEEEECCCCCCHHHHHHHHHHhc
Confidence 334445555 99999999999999999999975
No 205
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.85 E-value=0.00056 Score=65.60 Aligned_cols=23 Identities=43% Similarity=0.640 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.++|+|++|+|||||++.+.|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999964
No 206
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.85 E-value=0.00046 Score=68.44 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.+++|+||+||||||++++|.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 389999999999999999999864
No 207
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.85 E-value=0.00079 Score=70.99 Aligned_cols=62 Identities=31% Similarity=0.370 Sum_probs=38.6
Q ss_pred cEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeecc-ccCCCccchhccccCCCccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMAR-CAGIEPCTLIMDLEGTDGRE 105 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~-~~~~~~~~~v~d~~g~~~~~ 105 (712)
.+|+|+|+.|+|||||+|.|.|..+....+..| +|....... .......+.+.|..|.....
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~---tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~ 73 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAG---TTRMRVLGVKNIPNEAQIIFLDTPGIYEPK 73 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSC---CCCSCEEEEEEETTTEEEEEEECCCCCCCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccccCCCCC---ceeeEEEEEEecCCCCeEEEEECcCCCccc
Confidence 379999999999999999999987653333333 333211110 00112345667988876533
No 208
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.81 E-value=0.00049 Score=76.37 Aligned_cols=102 Identities=18% Similarity=0.222 Sum_probs=58.5
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCC-eeeccccCCCccchhccccCCCcccccchhhHHH-HHH
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKG-IWMARCAGIEPCTLIMDLEGTDGRERGEDDTAFE-KQS 117 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~g-i~~~~~~~~~~~~~v~d~~g~~~~~r~~~~~~fe-rQr 117 (712)
+..+.|.||+|+|||||+++|.+.. .... +... +++... .+.-+. ..... ...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l----~~~~----~~~~v~~v~~~------~~~~~~-----------~~~~~~~~~ 184 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV----VQNE----PDLRVMYITSE------KFLNDL-----------VDSMKEGKL 184 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH----HHHC----CSSCEEEEEHH------HHHHHH-----------HHHHHTTCH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH----HHhC----CCCeEEEeeHH------HHHHHH-----------HHHHHcccH
Confidence 5689999999999999999999876 1110 0011 111110 000000 00000 001
Q ss_pred HHHHHHHH---HHhhhccccCCCch-hhhhChhhHHHHHHHHHHhhCCCCceEEEEecCC
Q 005138 118 ALFALAVS---DIVLINMWCHDIGR-EQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDK 173 (712)
Q Consensus 118 v~~A~Ala---~iLlLDEP~~~LD~-~~~a~~~l~~~v~e~l~~L~~~~g~tiL~VtHDl 173 (712)
-.+...+. ++|++||+..-.+. .. ...++..+..+... |..+|+++|+.
T Consensus 185 ~~~~~~~~~~~~vL~IDEi~~l~~~~~~------q~~l~~~l~~l~~~-~~~iIitt~~~ 237 (440)
T 2z4s_A 185 NEFREKYRKKVDILLIDDVQFLIGKTGV------QTELFHTFNELHDS-GKQIVICSDRE 237 (440)
T ss_dssp HHHHHHHTTTCSEEEEECGGGGSSCHHH------HHHHHHHHHHHHTT-TCEEEEEESSC
T ss_pred HHHHHHhcCCCCEEEEeCcccccCChHH------HHHHHHHHHHHHHC-CCeEEEEECCC
Confidence 11222222 79999998665443 23 67788888877654 88999999985
No 209
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.79 E-value=0.0005 Score=67.19 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFG 62 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~G 62 (712)
+++|+|+|||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 799999999999999999998
No 210
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.77 E-value=0.00044 Score=76.61 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=23.9
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccc
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
++.+++++|||||||||++..|++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999999887
No 211
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.76 E-value=0.00046 Score=70.06 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=21.1
Q ss_pred EEEEcCCCCChhHHHHHHhccc
Q 005138 43 VSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 43 vaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+.|+||||||||||+++|+|..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999999999987
No 212
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.75 E-value=0.0021 Score=66.52 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=23.0
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccc
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
....+.|.||+|+|||||+++|++..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 34589999999999999999999865
No 213
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.69 E-value=0.00098 Score=64.67 Aligned_cols=23 Identities=43% Similarity=0.585 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.|+|+|++|+|||||+|.+.|..
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~~ 30 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGVH 30 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 58999999999999999999854
No 214
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.67 E-value=0.0008 Score=63.31 Aligned_cols=24 Identities=38% Similarity=0.660 Sum_probs=22.3
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
.++|+|++|+|||||+|.|.|..+
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999999764
No 215
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.66 E-value=0.00059 Score=70.43 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=21.1
Q ss_pred EEEEcCCCCChhHHHHHHhccc
Q 005138 43 VSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 43 vaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
++|+||||||||||+++|+|..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 7999999999999999999987
No 216
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.60 E-value=0.0027 Score=75.69 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=23.6
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccc
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.++.+.|+||+|||||||+++|+|..
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 34589999999999999999999987
No 217
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.56 E-value=0.00097 Score=65.53 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=22.9
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccc
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+|.+++|+||+|||||||.+.|....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34599999999999999999998765
No 218
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.55 E-value=0.0012 Score=63.72 Aligned_cols=42 Identities=19% Similarity=0.201 Sum_probs=24.7
Q ss_pred cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccCccCCC
Q 005138 23 GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAF 71 (712)
Q Consensus 23 ~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~ 71 (712)
+++++++..... .++|+|++|+|||||++.+.+-.|....|+
T Consensus 13 ~l~~~~~~~~~~-------ki~~vG~~~vGKSsli~~l~~~~~~~~~~t 54 (190)
T 1m2o_B 13 VLASLGLWNKHG-------KLLFLGLDNAGKTTLLHMLKNDRLATLQPT 54 (190)
T ss_dssp -----------C-------EEEEEESTTSSHHHHHHHHHHSCCCCCCCC
T ss_pred HHHHhhccCCcc-------EEEEECCCCCCHHHHHHHHhcCCCCccccC
Confidence 456666665544 589999999999999999998765433333
No 219
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.54 E-value=0.0011 Score=65.48 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+.+|+|||||||||+|.+|.-..
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 89999999999999999997665
No 220
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.52 E-value=0.001 Score=69.73 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=24.2
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccc
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
++.+|+|.||+|||||||.+.|.+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45699999999999999999999988
No 221
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.50 E-value=0.0019 Score=68.05 Aligned_cols=59 Identities=29% Similarity=0.347 Sum_probs=35.6
Q ss_pred EEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccccCCCccchhccccCCCc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIMDLEGTDG 103 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~~~~~~~~~v~d~~g~~~ 103 (712)
.|+|+|++|+|||||+|.|.|..+....+. .++|......-.......+.+.|+.|...
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~~~ivs~~---~~tTr~~i~~i~~~~~~~l~l~DTpG~~~ 67 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVKVAPISPR---PQTTRKRLRGILTEGRRQIVFVDTPGLHK 67 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCCSCCCSS---SCCCCSCEEEEEEETTEEEEEEECCCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeeecCC---CCceeEEEEEEEEeCCcEEEEecCccccc
Confidence 799999999999999999999875422222 22332211000001123455678888754
No 222
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.44 E-value=0.0014 Score=62.52 Aligned_cols=24 Identities=38% Similarity=0.628 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
-.++|+|++|+|||||+|.|.|..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~ 31 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGEN 31 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999965
No 223
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.41 E-value=0.0009 Score=65.20 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=27.4
Q ss_pred cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccccC
Q 005138 23 GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTNFR 66 (712)
Q Consensus 23 ~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~ 66 (712)
+++++++..... .++|+|++|+|||||++.+.|-.|.
T Consensus 15 ~l~~~~~~~~~~-------ki~lvG~~~vGKSsLi~~l~~~~~~ 51 (198)
T 1f6b_A 15 VLQFLGLYKKTG-------KLVFLGLDNAGKTTLLHMLKDDRLG 51 (198)
T ss_dssp HHHHHTCTTCCE-------EEEEEEETTSSHHHHHHHHSCC---
T ss_pred HHHHhhccCCCc-------EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 456666665544 4899999999999999999986654
No 224
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.39 E-value=0.0017 Score=65.53 Aligned_cols=38 Identities=21% Similarity=0.314 Sum_probs=25.1
Q ss_pred ccccccccccccccccccEEEEEcCCCCChhHHHHHHhccc
Q 005138 24 IEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 24 L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
|.++++.+..- .+|.+++|.|++||||||+++.|....
T Consensus 13 ~~~~~~~~~~~---~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 13 LGTENLYFQSN---AMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp -------CCCC---CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCeeEeec---CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 55666655411 234499999999999999999999987
No 225
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.35 E-value=0.0019 Score=60.37 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHhccccC
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNFR 66 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f~ 66 (712)
-|+|+|+.|+|||||+|.+.|-.|.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~~~ 30 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQER 30 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC---
T ss_pred EEEEECCCCccHHHHHHHHhcCCCc
Confidence 5899999999999999999998754
No 226
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.34 E-value=0.0014 Score=64.07 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+++|+|++|||||||.+.|.+..
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999998765
No 227
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.33 E-value=0.0015 Score=70.75 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCChhHHHHHHhcccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
.+|+|+|++|||||||+|.|.|..+
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC--
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCc
Confidence 4599999999999999999999873
No 228
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.29 E-value=0.00095 Score=75.48 Aligned_cols=35 Identities=20% Similarity=0.175 Sum_probs=29.4
Q ss_pred cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccc
Q 005138 23 GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 23 ~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.++++.+++..| +.+|+|+|||||||||.+|.++.
T Consensus 50 ~~~~~~l~f~~g-------~n~i~G~NGaGKS~lleAl~~ll 84 (517)
T 4ad8_A 50 TITQLELELGGG-------FCAFTGETGAGKSIIVDALGLLL 84 (517)
T ss_dssp TBSCEEEECCCS-------EEEEEESHHHHHHHHTHHHHHHT
T ss_pred ceeeEEEecCCC-------eEEEEcCCCCCHHHHHHHHHHHh
Confidence 356676666655 79999999999999999999887
No 229
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.29 E-value=0.0015 Score=67.25 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=22.3
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
.++|+|++|||||||+|.|.|..+
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999999873
No 230
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.24 E-value=0.0034 Score=67.84 Aligned_cols=21 Identities=38% Similarity=0.722 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFG 62 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~G 62 (712)
+.+|.|||||||||||-+|.=
T Consensus 27 l~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 27 IVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999974
No 231
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.20 E-value=0.0022 Score=62.22 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.+++|+|++|||||||++.|.+..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 489999999999999999999876
No 232
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.20 E-value=0.0056 Score=62.17 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.|+|+|+.|+|||||+|.|.|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999865
No 233
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.18 E-value=0.0026 Score=61.25 Aligned_cols=26 Identities=31% Similarity=0.280 Sum_probs=23.8
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccc
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
++.++.|+|++||||||+.+.|.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45599999999999999999999987
No 234
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.16 E-value=0.0026 Score=61.43 Aligned_cols=32 Identities=16% Similarity=0.127 Sum_probs=24.1
Q ss_pred ccccccccccccccccEEEEEcCCCCChhHHHHHHhcc
Q 005138 26 HFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGT 63 (712)
Q Consensus 26 ~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl 63 (712)
++++....+. +++|+|+.||||||+.+.|...
T Consensus 2 ~~~~~~~~~~------~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGI------NILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSC------EEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCC------EEEEECCCCCCHHHHHHHHHHh
Confidence 3455555555 9999999999999999999865
No 235
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.13 E-value=0.0014 Score=64.76 Aligned_cols=25 Identities=32% Similarity=0.212 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccc
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+.++.|+|++||||||+.+.|.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4499999999999999999999987
No 236
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.09 E-value=0.0058 Score=63.34 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
..+.|.||+|+|||||.++|.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 489999999999999999999987
No 237
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.07 E-value=0.0028 Score=60.62 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCChhHHHHHHhcc
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGT 63 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl 63 (712)
|.+++|+|++||||||+.+.|...
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999853
No 238
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.07 E-value=0.0024 Score=70.55 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCChhHHHHHHhcccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-.++|+|++|+|||||+|.|.|..+
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~ 205 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKER 205 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTT
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcc
Confidence 4799999999999999999999864
No 239
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.04 E-value=0.0021 Score=74.11 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=32.4
Q ss_pred cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccc
Q 005138 23 GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 23 ~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+++.+++.+..|. .++|+||||+|||||+++|+|+.
T Consensus 49 ~l~~l~~~i~~g~------~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 49 AVEVIKTAANQKR------HVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHHHHHHHHHTTC------CEEEECCTTSSHHHHHHHHHHTS
T ss_pred hHhhccccccCCC------EEEEEeCCCCCHHHHHHHHhccC
Confidence 4677788888777 99999999999999999999998
No 240
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.01 E-value=0.003 Score=59.29 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+++|.|+.||||||+.+.|....
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999998664
No 241
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.00 E-value=0.002 Score=61.62 Aligned_cols=32 Identities=25% Similarity=0.518 Sum_probs=25.1
Q ss_pred EEEEEcCCCCChhHHHHHHhccccCccCCCCC
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNFREMDAFKG 73 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG 73 (712)
.++|+|++|+|||||++.+.|-.+....|+.|
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g 49 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASEDISHITPTQG 49 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSCCEEEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcccCcCC
Confidence 68999999999999999999876433334333
No 242
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.98 E-value=0.0027 Score=58.93 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-++|+|+.|+|||||+|.+.|..+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 589999999999999999998764
No 243
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.98 E-value=0.0022 Score=73.05 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=26.8
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccccCccCCCCCe
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGR 74 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~ 74 (712)
++.+++|+||+|+|||||+++|++.. .+..|+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l----~~~~~~ 138 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL----GRKFVR 138 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH----TCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc----CCCeEE
Confidence 34599999999999999999999988 454454
No 244
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.97 E-value=0.0035 Score=68.55 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.++|+|++|+|||||+|+|.|..
T Consensus 24 kvgIVG~pnvGKSTL~n~Ltg~~ 46 (396)
T 2ohf_A 24 KIGIVGLPNVGKSTFFNVLTNSQ 46 (396)
T ss_dssp CEEEECCSSSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 79999999999999999999985
No 245
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.96 E-value=0.0051 Score=58.88 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||+|.|.|-.|
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~~ 50 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNEF 50 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998764
No 246
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.94 E-value=0.0045 Score=57.51 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.4
Q ss_pred EEEEEcCCCCChhHHHHHHhccccC
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNFR 66 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f~ 66 (712)
.++|+|+.|+|||||+|.+.+-.|.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~~~~ 33 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVGEVV 33 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 6899999999999999999887654
No 247
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.91 E-value=0.0036 Score=62.88 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccc
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+.+++|+|++||||||+.+.|.+..
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3499999999999999999998743
No 248
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.87 E-value=0.0022 Score=69.74 Aligned_cols=49 Identities=14% Similarity=0.145 Sum_probs=38.9
Q ss_pred EEEEeeeeeec--ccccc--------------ccccccccccccccccEEEEEcCCCCChhHHHHHHhccc
Q 005138 10 TQLIDGDGTFN--VSGIE--------------HFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 10 I~l~~l~k~y~--~~~L~--------------~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+.+.|++..|. ...++ |+++.+..|+ .++|+||+|+|||||++.|.+..
T Consensus 134 i~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQ------r~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 134 ILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQ------RGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTC------EEEEECCSSSSHHHHHHHHHHHH
T ss_pred ceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCc------EEEEecCCCCChhHHHHHHHHHH
Confidence 45566666673 22466 7888888888 99999999999999999998865
No 249
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.85 E-value=0.0049 Score=56.97 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.1
Q ss_pred EEEEEcCCCCChhHHHHHHhccccC
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNFR 66 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f~ 66 (712)
-++|+|+.|+|||||++.+.+-.|.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~ 26 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIV 26 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcC
Confidence 3799999999999999999987654
No 250
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.85 E-value=0.004 Score=58.17 Aligned_cols=19 Identities=42% Similarity=0.527 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChhHHHHHH
Q 005138 42 VVSIMGPQSSGKSTLLNHL 60 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L 60 (712)
+++|.||.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 251
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.84 E-value=0.0048 Score=58.65 Aligned_cols=25 Identities=40% Similarity=0.639 Sum_probs=22.5
Q ss_pred EEEEEcCCCCChhHHHHHHhccccC
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNFR 66 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f~ 66 (712)
.++|+|+.|+|||||+|.|.|-.+.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~~~ 49 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRKIA 49 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCccc
Confidence 6899999999999999999997643
No 252
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.78 E-value=0.0054 Score=63.16 Aligned_cols=23 Identities=43% Similarity=0.665 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
-|+|+|+.|+|||||+|.|+|..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999876
No 253
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.77 E-value=0.0089 Score=61.89 Aligned_cols=23 Identities=35% Similarity=0.690 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.|+|+|++|+|||||+|.|.|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999976
No 254
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.68 E-value=0.0036 Score=65.84 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccc
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+.+++++|+||+||||++..|++..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4499999999999999999999987
No 255
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.66 E-value=0.0034 Score=59.30 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
.|+|+|++|+|||||++.+.+-.|
T Consensus 20 ~i~v~G~~~~GKssli~~l~~~~~ 43 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQIGEV 43 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCc
Confidence 789999999999999999997554
No 256
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.65 E-value=0.0056 Score=58.44 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccc
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+.++.|.|+.||||||+.+.|.-..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3489999999999999999998754
No 257
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.64 E-value=0.0049 Score=58.95 Aligned_cols=25 Identities=40% Similarity=0.600 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCChhHHHHHHhcccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-.++|+|+.|+|||||++.|.|..|
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4789999999999999999999774
No 258
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.63 E-value=0.0033 Score=67.71 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=30.7
Q ss_pred cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccc
Q 005138 23 GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 23 ~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+++.+++.+..|+ ...++|+|++||||||+.++|++..
T Consensus 11 il~~l~~~i~~g~----~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 11 VLQLLDNRIEDNY----RVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHTTTTCS----CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCC----eeEEEEECCCCCcHHHHHHHHHHHh
Confidence 4667777777776 1139999999999999999999876
No 259
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.63 E-value=0.0056 Score=60.44 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCChhHHHHHHhcc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGT 63 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl 63 (712)
-+++|.|++||||||+.+.|.++
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~l 27 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFADL 27 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHc
Confidence 48999999999999999999873
No 260
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.62 E-value=0.0058 Score=57.95 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.++.|.|++||||||+.+.|....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 489999999999999999998765
No 261
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.61 E-value=0.0044 Score=66.88 Aligned_cols=22 Identities=45% Similarity=0.696 Sum_probs=20.6
Q ss_pred EEEEcCCCCChhHHHHHHhccc
Q 005138 43 VSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 43 vaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
++|+|++|+|||||+|.|+|..
T Consensus 40 I~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp EEECCCTTSCHHHHHHHHTTCC
T ss_pred EEEEcCCCCCHHHHHHHHhCCC
Confidence 6999999999999999999875
No 262
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.60 E-value=0.007 Score=58.12 Aligned_cols=24 Identities=25% Similarity=0.541 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||+|.+.|-.|
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~~ 48 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDHF 48 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998764
No 263
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.58 E-value=0.0057 Score=59.07 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+++|.|+.||||||+.+.|....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999865
No 264
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.57 E-value=0.0086 Score=57.22 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.|+|+|+.|+|||||+|.+.|-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999876
No 265
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.57 E-value=0.0054 Score=56.72 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-++|+|+.|+|||||+|.+.|-.|
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~~ 30 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGIF 30 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 579999999999999999998764
No 266
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.57 E-value=0.0055 Score=62.62 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+++|+||+|||||||.+.|++..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 78999999999999999998754
No 267
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.54 E-value=0.0053 Score=60.94 Aligned_cols=25 Identities=24% Similarity=0.419 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCChhHHHHHHhcccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-.|+|+|+.|+|||||+|.+.|-.|
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~~~ 54 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRANV 54 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTTCE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3799999999999999999999775
No 268
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.52 E-value=0.0054 Score=56.25 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
.++|+|+.|+|||||+|.+.|-.|
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~~ 28 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNHF 28 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC
Confidence 489999999999999999998764
No 269
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.52 E-value=0.0061 Score=56.46 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||+|.+.|-.|
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~~ 28 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKGTF 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 589999999999999999998664
No 270
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.52 E-value=0.0059 Score=67.40 Aligned_cols=25 Identities=28% Similarity=0.187 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccc
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+.+++++|+|||||||++..|++..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3499999999999999999999998
No 271
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.52 E-value=0.0059 Score=56.18 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||++.+.+-.|
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~~ 28 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGTF 28 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 589999999999999999987653
No 272
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=95.51 E-value=0.019 Score=63.21 Aligned_cols=25 Identities=40% Similarity=0.676 Sum_probs=22.9
Q ss_pred EEEEEcCCCCChhHHHHHHhccccC
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNFR 66 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f~ 66 (712)
.|+|+|+.|+|||||+|.|.|..++
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~~~ 29 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGERIS 29 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce
Confidence 6999999999999999999998753
No 273
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.51 E-value=0.0059 Score=59.82 Aligned_cols=23 Identities=48% Similarity=0.770 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.+.|+||+|||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999997543
No 274
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.49 E-value=0.011 Score=60.62 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCChhHHHHHHhcccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-.++|+|+.|+|||||+|.|+|..+
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~~ 64 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGERV 64 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4789999999999999999999774
No 275
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.48 E-value=0.0054 Score=62.85 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.|+|+|..|+|||||+|.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999976
No 276
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.48 E-value=0.014 Score=59.81 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.-+.|.||.|+|||||++.|++..
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 468999999999999999998865
No 277
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.48 E-value=0.006 Score=56.14 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-++|+|+.|+|||||+|.+.|-.|
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~~ 29 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDEF 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCcc
Confidence 589999999999999999998764
No 278
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.47 E-value=0.0062 Score=55.97 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
.++|+|+.|+|||||++.+.|-.+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~ 26 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKRS 26 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999998763
No 279
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.45 E-value=0.0063 Score=56.35 Aligned_cols=24 Identities=25% Similarity=0.529 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-++|+|+.|+|||||+|.+.|-.|
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~ 31 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDSF 31 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 589999999999999999998764
No 280
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.45 E-value=0.012 Score=63.49 Aligned_cols=27 Identities=37% Similarity=0.505 Sum_probs=22.7
Q ss_pred ccccEEEEEcCCCCChhHHHHHHhccc
Q 005138 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 38 ~~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.+|.++.|.|++|+|||||...++...
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456699999999999999998887543
No 281
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.44 E-value=0.01 Score=56.02 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||+|.|.|-.|
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~~ 29 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNHF 29 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 589999999999999999998663
No 282
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.44 E-value=0.0071 Score=56.87 Aligned_cols=30 Identities=20% Similarity=0.514 Sum_probs=24.7
Q ss_pred EEEEEcCCCCChhHHHHHHhccccCccCCC
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNFREMDAF 71 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~ 71 (712)
-++|+|+.|+|||||++.+.+-.|....|+
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~~~~~~~t 38 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGSYQVLEKT 38 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSCCCCCSSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCcCCC
Confidence 589999999999999999998776543333
No 283
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.42 E-value=0.0065 Score=56.16 Aligned_cols=24 Identities=21% Similarity=0.537 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-++|+|+.|+|||||++.+.|-.|
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~~ 28 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSNDF 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 489999999999999999998764
No 284
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.41 E-value=0.0074 Score=57.03 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFG 62 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~G 62 (712)
++.|.|++||||||+.+.|..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 789999999999999999986
No 285
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.40 E-value=0.0063 Score=56.38 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||+|.+.|-.|
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~~ 28 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDKF 28 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC
Confidence 489999999999999999998764
No 286
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.39 E-value=0.0065 Score=56.91 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||+|.|.|-.|
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~~ 34 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNTF 34 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998764
No 287
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.39 E-value=0.0074 Score=62.34 Aligned_cols=24 Identities=38% Similarity=0.692 Sum_probs=22.1
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
.|+|+|..|+|||||+|.|.|..+
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~~ 28 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSRQ 28 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999999763
No 288
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.38 E-value=0.008 Score=58.90 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.|+|+|+.|+|||||+|.|.|-.
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999975
No 289
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.38 E-value=0.0058 Score=62.23 Aligned_cols=27 Identities=15% Similarity=0.083 Sum_probs=23.8
Q ss_pred ccccEEEEEcCCCCChhHHHHHHhccc
Q 005138 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 38 ~~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
..+.++.|+|++||||||+.+.|.+..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 345699999999999999999998866
No 290
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.38 E-value=0.0072 Score=56.12 Aligned_cols=24 Identities=33% Similarity=0.354 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-++|+|+.|+|||||++.+.|..+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~~ 27 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQG 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHhccC
Confidence 489999999999999999998663
No 291
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=95.38 E-value=0.023 Score=60.70 Aligned_cols=25 Identities=36% Similarity=0.771 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCChhHHHHHHhcccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-.|+|+|.+|+|||||+|.|.|..|
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~~~ 56 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGRDF 56 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTSCC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCc
Confidence 3799999999999999999999875
No 292
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.37 E-value=0.0065 Score=57.76 Aligned_cols=23 Identities=35% Similarity=0.323 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
++.|+|++||||||+.+.|+...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998765
No 293
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.37 E-value=0.0062 Score=58.18 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.++|+|+.|+|||||+|.|.|-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999875
No 294
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.37 E-value=0.0072 Score=56.09 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-++|+|+.|+|||||+|.+.+-.|
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~~ 31 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENKF 31 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 589999999999999999998764
No 295
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.36 E-value=0.007 Score=55.87 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-++|+|+.|+|||||+|.+.+-.|
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~~ 28 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGIF 28 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 489999999999999999998653
No 296
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.36 E-value=0.0075 Score=58.21 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.+++|.|++|||||||++.|.+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 489999999999999999999876
No 297
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.36 E-value=0.0091 Score=55.93 Aligned_cols=25 Identities=40% Similarity=0.600 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCChhHHHHHHhcccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
..|+|+|+.|+|||||++.+.|-.|
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~~~ 33 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHSKV 33 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcc
Confidence 4799999999999999999998764
No 298
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.35 E-value=0.0071 Score=56.69 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
.|+|+|+.|+|||||++.+.|-.|
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~~ 33 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDKY 33 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC
Confidence 589999999999999999998764
No 299
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.31 E-value=0.0034 Score=61.39 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+++|.|++|||||||++.|....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 78999999999999999998765
No 300
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.31 E-value=0.0075 Score=56.47 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-++|+|+.|+|||||+|.+.+-.|
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~~ 32 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNKF 32 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 589999999999999999998764
No 301
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.31 E-value=0.0082 Score=57.54 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccc
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+.++.|.|+.||||||+.+.|....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4589999999999999999997643
No 302
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.29 E-value=0.01 Score=56.81 Aligned_cols=29 Identities=24% Similarity=0.332 Sum_probs=23.2
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccccCc
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTNFRE 67 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~ 67 (712)
....|+|+|+.|+|||||++.+.|-.|..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~ 44 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSS 44 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC---
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 33479999999999999999999987643
No 303
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.29 E-value=0.0072 Score=56.58 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-++|+|+.|+|||||+|.+.|-.|
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~~ 34 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSYF 34 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC
Confidence 689999999999999999998753
No 304
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.28 E-value=0.0078 Score=62.75 Aligned_cols=26 Identities=38% Similarity=0.764 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCChhHHHHHHhcccc
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
...|+|+|+.|+|||||+|.|.|..+
T Consensus 24 ~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 34799999999999999999999874
No 305
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.26 E-value=0.0049 Score=65.36 Aligned_cols=38 Identities=24% Similarity=0.251 Sum_probs=30.3
Q ss_pred cccccccccccccccccccEEEEEcCCCCChhHHHHHHhccc
Q 005138 23 GIEHFIKEVKLSDCGLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 23 ~L~~v~~~i~~ge~g~~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+++.+...+..|. .+ + +.+.||+|+|||||++++++..
T Consensus 33 ~~~~L~~~i~~g~--~~-~-~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 33 VITTVRKFVDEGK--LP-H-LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HHHHHHHHHHTTC--CC-C-EEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC--Cc-e-EEEECCCCCCHHHHHHHHHHHH
Confidence 4566667777766 11 1 8999999999999999999987
No 306
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.24 E-value=0.008 Score=55.51 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-++|+|+.|+|||||++.+.+-.|
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~~ 31 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKGQF 31 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 589999999999999999997653
No 307
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.22 E-value=0.012 Score=55.85 Aligned_cols=23 Identities=26% Similarity=0.577 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.++|+|+.|+|||||+|.+.|-.
T Consensus 20 ~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 20 RLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999765
No 308
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.20 E-value=0.0099 Score=57.57 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccc
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+.+++|.|+.||||||+.+.|....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4489999999999999999998643
No 309
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.20 E-value=0.0076 Score=57.11 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||+|.+.|-.|
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~ 26 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKKV 26 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcCC
Confidence 479999999999999999999775
No 310
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.20 E-value=0.0084 Score=57.03 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=22.1
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||+|.|.|-.|
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~~ 32 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDTF 32 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC
Confidence 589999999999999999999764
No 311
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.18 E-value=0.0088 Score=57.05 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCChhHHHHHHhcc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGT 63 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl 63 (712)
.++.|.|++||||||+.+.|.-.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 37899999999999999999843
No 312
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.18 E-value=0.0088 Score=60.69 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGT 63 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (712)
+++|.||+||||||+.+.|...
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999999843
No 313
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.16 E-value=0.0076 Score=57.22 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=25.2
Q ss_pred EEEEEcCCCCChhHHHHHHhccccCccCCCCC
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNFREMDAFKG 73 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG 73 (712)
.|+|+|+.|+|||||+|.+.|-.|....|+.|
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~ 54 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG 54 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTTSCEEEECCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCCcCc
Confidence 68999999999999999999877533333333
No 314
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.15 E-value=0.0094 Score=57.60 Aligned_cols=24 Identities=33% Similarity=0.322 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCChhHHHHHHhcc
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGT 63 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl 63 (712)
..+++|.|+.||||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 348999999999999999999864
No 315
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.15 E-value=0.01 Score=57.57 Aligned_cols=25 Identities=24% Similarity=0.167 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccc
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+.+++|.|+.||||||+.+.|....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4489999999999999999998755
No 316
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.15 E-value=0.013 Score=55.71 Aligned_cols=24 Identities=33% Similarity=0.528 Sum_probs=22.1
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
.|+|+|+.|+|||||++.|.+-.|
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~ 40 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDTF 40 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 689999999999999999998764
No 317
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.15 E-value=0.017 Score=59.00 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCChhHHHHHHhcccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-.|+|+|+.|+|||||+|.|.|-.+
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~~ 61 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQV 61 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4789999999999999999999774
No 318
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.11 E-value=0.01 Score=55.62 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-++|+|+.|+|||||++.+.+-.|
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~~ 31 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQETF 31 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGGT
T ss_pred EEEEECcCCCCHHHHHHHHHhCcC
Confidence 589999999999999999998764
No 319
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.10 E-value=0.0092 Score=56.47 Aligned_cols=24 Identities=21% Similarity=0.373 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||+|.+.+-.|
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~~ 36 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGKF 36 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998664
No 320
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.09 E-value=0.0088 Score=55.85 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||+|.+.+-.|
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~~ 39 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDSF 39 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 589999999999999999997664
No 321
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.08 E-value=0.019 Score=55.31 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
--++|+|+.|+|||||++.+.|-.
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 368999999999999999999854
No 322
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.08 E-value=0.01 Score=56.60 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
++.|.|+.||||||+.+.|.-..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999998755
No 323
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.02 E-value=0.011 Score=56.65 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccc
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+.+++|.|+.||||||+.+.|....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999997644
No 324
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.01 E-value=0.011 Score=63.35 Aligned_cols=112 Identities=12% Similarity=0.043 Sum_probs=58.8
Q ss_pred ccccEEEEEcCCCCChhHHHHHHhccccCccCCCCCeeeccCCeeeccccCCCccchhc----cccCCCcc-cccchhhH
Q 005138 38 LSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGRSQTTKGIWMARCAGIEPCTLIM----DLEGTDGR-ERGEDDTA 112 (712)
Q Consensus 38 ~~g~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~~~~t~gi~~~~~~~~~~~~~v~----d~~g~~~~-~r~~~~~~ 112 (712)
.+|+++.|.|++|+|||||+..++... ...|.. ..++..... ...++. ...+.+.. .+.+....
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~-----a~~g~~----Vl~fSlEms--~~ql~~Rlls~~~~v~~~~l~~g~Ls~ 112 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSA-----LNDDRG----VAVFSLEMS--AEQLALRALSDLTSINMHDLESGRLDD 112 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHH-----HHTTCE----EEEEESSSC--HHHHHHHHHHHHHCCCHHHHHHTCCCH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH-----HHcCCe----EEEEeCCCC--HHHHHHHHHHHhhCCCHHHHhcCCCCH
Confidence 344599999999999999998887654 111210 022222111 000000 01111111 11112234
Q ss_pred HHHHHHHHHHHHH---HHhhhccccCCCchhhhhChhhHHHHHHHHHHhhCCC-CceEEEEec
Q 005138 113 FEKQSALFALAVS---DIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPR-KTTLMFVIR 171 (712)
Q Consensus 113 ferQrv~~A~Ala---~iLlLDEP~~~LD~~~~a~~~l~~~v~e~l~~L~~~~-g~tiL~VtH 171 (712)
.+.+++..|.... ++.|.|+|... ...+...++++.++. |..+|+|-|
T Consensus 113 ~e~~~l~~a~~~l~~~~l~I~d~~~~s-----------i~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 113 DQWENLAKCFDHLSQKKLFFYDKSYVR-----------IEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHHHHHHHHHSCEEEECCTTCC-----------HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCeEEeCCCCCc-----------HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 4677777776655 57777876432 334555555555445 678887754
No 325
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.01 E-value=0.015 Score=62.81 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.++|+|.+|+|||||+|.|.|..
T Consensus 4 kI~IVG~pnvGKSTL~n~Lt~~~ 26 (363)
T 1jal_A 4 KCGIVGLPNVGKSTLFNALTKAG 26 (363)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999965
No 326
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.01 E-value=0.01 Score=55.40 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-++|+|+.|+|||||+|.+.+-.|
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~~ 40 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKKF 40 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 689999999999999999998764
No 327
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.00 E-value=0.012 Score=61.36 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=22.9
Q ss_pred ccccEEEEEcCCCCChhHHHHHHhccc
Q 005138 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 38 ~~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
..+.++.|.||+|||||||.+.|..-.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345699999999999999999997643
No 328
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.00 E-value=0.015 Score=55.65 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=22.1
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||+|.+.+-.|
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~~ 47 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQF 47 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 689999999999999999998764
No 329
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.00 E-value=0.012 Score=56.23 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccc
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
..++.|+|+.||||||+.+.|....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999997644
No 330
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.00 E-value=0.01 Score=55.65 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||+|.+.+-.|
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~~ 35 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGAF 35 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC
Confidence 589999999999999999998774
No 331
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.99 E-value=0.011 Score=57.37 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+++|.|++||||||+.+.|.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998854
No 332
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.99 E-value=0.012 Score=56.18 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCChhHHHHHHhcc
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGT 63 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl 63 (712)
+.+++|.|+.||||||+.+.|.-.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999998754
No 333
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.97 E-value=0.01 Score=56.42 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
.|+|+|+.|+|||||++.|.|-.|
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~~ 46 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNHF 46 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 689999999999999999998664
No 334
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.96 E-value=0.011 Score=56.38 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
.|+|+|+.|+|||||++.+.+-.|
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~~~ 41 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMNEV 41 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999997654
No 335
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.95 E-value=0.011 Score=55.69 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||+|.|.+-.|
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~~ 43 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDEF 43 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhhCCC
Confidence 689999999999999999998764
No 336
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.95 E-value=0.016 Score=54.53 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.|+|+|+.|+|||||++.+.+-.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999999544
No 337
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.92 E-value=0.012 Score=55.36 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-++|+|+.|+|||||+|.+.+-.|
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~~ 37 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQF 37 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 589999999999999999998764
No 338
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.92 E-value=0.012 Score=57.25 Aligned_cols=24 Identities=29% Similarity=0.212 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCChhHHHHHHhcc
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGT 63 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl 63 (712)
+.+++|.|+.||||||+.+.|.-.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 449999999999999999999764
No 339
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.89 E-value=0.011 Score=55.95 Aligned_cols=24 Identities=29% Similarity=0.574 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-++|+|+.|+|||||+|.+.+-.|
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~~ 35 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKKF 35 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 589999999999999999998764
No 340
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.87 E-value=0.011 Score=59.73 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
-+.|.||+|+|||||+++|++..
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHc
Confidence 47899999999999999999876
No 341
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.87 E-value=0.011 Score=56.74 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||++.+.|-.|
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~~ 39 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDEF 39 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 689999999999999999998664
No 342
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.85 E-value=0.012 Score=66.24 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=21.0
Q ss_pred EEEEcCCCCChhHHHHHHhccc
Q 005138 43 VSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 43 vaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+.|+||+|+|||||+++|+|..
T Consensus 67 vLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999999999976
No 343
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.82 E-value=0.012 Score=56.36 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||+|.|.|-.|
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~~~ 33 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKGTF 33 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Confidence 689999999999999999998664
No 344
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.82 E-value=0.011 Score=56.89 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+++|.|+.||||||+.+.|....
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999997654
No 345
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.82 E-value=0.012 Score=56.66 Aligned_cols=24 Identities=33% Similarity=0.628 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
.|+|+|+.|+|||||++.+.|-.|
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~~ 33 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKKF 33 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 689999999999999999998764
No 346
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.81 E-value=0.014 Score=56.14 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+++|.|+.||||||+.+.|.-..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
No 347
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.77 E-value=0.013 Score=55.98 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=22.1
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||+|.+.|-.|
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~ 47 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDSF 47 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 689999999999999999998775
No 348
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.77 E-value=0.013 Score=56.09 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-++|+|+.|+|||||++.+.+-.|
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~ 45 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTY 45 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999998887654
No 349
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.76 E-value=0.013 Score=55.69 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
-|+|+|+.|+|||||+|.+.|..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999999999865
No 350
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.76 E-value=0.015 Score=56.72 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=21.9
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccc
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+.+++|.|+.||||||+.+.|.-..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4499999999999999999998643
No 351
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.75 E-value=0.013 Score=55.29 Aligned_cols=24 Identities=29% Similarity=0.474 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
.|+|+|+.|+|||||+|.+.+-.|
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~~ 43 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKIF 43 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 689999999999999999997653
No 352
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.74 E-value=0.011 Score=57.27 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.|+|+|+.|+|||||++.+.|..
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 68999999999999999998865
No 353
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.69 E-value=0.013 Score=55.73 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-++|+|+.|+|||||++.+.+-.|
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~~ 32 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDCF 32 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998765
No 354
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.68 E-value=0.011 Score=56.35 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChhHHHHHHhccccC
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNFR 66 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f~ 66 (712)
-|+|+|+.|+|||||+|.+.+-.|.
T Consensus 24 ~i~v~G~~~~GKssli~~l~~~~~~ 48 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHLGDVV 48 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCCSCCE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC
Confidence 6999999999999999999876543
No 355
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.68 E-value=0.014 Score=55.68 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||+|.|.+-.|
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~~ 41 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDTY 41 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 589999999999999999998664
No 356
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.66 E-value=0.012 Score=60.53 Aligned_cols=25 Identities=36% Similarity=0.771 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCChhHHHHHHhcccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-.|+|+|..|+|||||+|.|.|..|
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCCc
Confidence 3799999999999999999999875
No 357
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.66 E-value=0.014 Score=57.07 Aligned_cols=24 Identities=42% Similarity=0.621 Sum_probs=22.3
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
.++|+|+.|+|||||++.|.+-.|
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~~ 37 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDSV 37 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999998775
No 358
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.66 E-value=0.014 Score=54.88 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-++|+|+.|+|||||++.+.+-.|
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~~ 30 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNAF 30 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 589999999999999999997653
No 359
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.60 E-value=0.014 Score=56.09 Aligned_cols=24 Identities=29% Similarity=0.598 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||+|.|.|-.|
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~~ 51 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDTF 51 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998764
No 360
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.59 E-value=0.016 Score=55.93 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||++.+.|-.|
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~~ 33 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDSF 33 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998764
No 361
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.59 E-value=0.015 Score=56.94 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.+++|+|+.|+|||||++.|.+-.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 389999999999999999998865
No 362
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.58 E-value=0.015 Score=55.39 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||+|.+.+-.|
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~~ 45 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGRF 45 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 689999999999999999997664
No 363
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.56 E-value=0.014 Score=56.36 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=22.2
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||+|.+.|-.|
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~~ 49 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGEF 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCCC
Confidence 689999999999999999998774
No 364
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.56 E-value=0.014 Score=55.75 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||+|.+.|-.|
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~~ 48 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDTF 48 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCcCHHHHHHHHhcCCC
Confidence 589999999999999999998764
No 365
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.53 E-value=0.015 Score=55.27 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=17.6
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccc
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+.++.|.|+.||||||+.+.|....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3489999999999999999997543
No 366
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.51 E-value=0.016 Score=55.45 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-++|+|+.|+|||||++.+.+-.|
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~~ 46 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKRF 46 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998764
No 367
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.51 E-value=0.015 Score=56.28 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||++.|.|-.|
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~~ 33 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDTY 33 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998764
No 368
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.50 E-value=0.018 Score=54.94 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+++|.|+.||||||+.+.|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999997644
No 369
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.48 E-value=0.016 Score=56.11 Aligned_cols=24 Identities=29% Similarity=0.598 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||+|.+.+-.|
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~~ 50 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENKF 50 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC---
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC
Confidence 589999999999999999998764
No 370
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.44 E-value=0.017 Score=59.13 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=22.1
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
.|+|+|+.|+|||||+|.|.|..+
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~~ 30 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTKQ 30 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Confidence 689999999999999999999764
No 371
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.43 E-value=0.017 Score=54.18 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-++|+|+.|+|||||++.+.+-.|
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~~ 33 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNTF 33 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999997654
No 372
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.42 E-value=0.017 Score=55.92 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||++.+.|-.|
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~~ 45 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDKF 45 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 689999999999999999998764
No 373
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.42 E-value=0.019 Score=56.34 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGT 63 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (712)
.++|.|+.||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999653
No 374
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.42 E-value=0.012 Score=56.65 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
.|+|+|+.|+|||||++.+.+-.|
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~~~ 54 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLGEI 54 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCc
Confidence 699999999999999999987664
No 375
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.40 E-value=0.016 Score=62.75 Aligned_cols=23 Identities=48% Similarity=0.612 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.++|+|++|+|||||+|.|.|..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999975
No 376
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.40 E-value=0.018 Score=55.37 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||++.+.+-.|
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~~ 53 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKRF 53 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 589999999999999999998764
No 377
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.40 E-value=0.017 Score=55.65 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||+|.+.|-.|
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~~ 53 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNEF 53 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC
Confidence 689999999999999999998764
No 378
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.36 E-value=0.018 Score=55.12 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=22.1
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||++.+.+-.|
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~~ 48 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGEI 48 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 689999999999999999998764
No 379
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.34 E-value=0.018 Score=54.06 Aligned_cols=23 Identities=17% Similarity=0.249 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+++|.|+.||||||+.+.|....
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999997654
No 380
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.34 E-value=0.017 Score=56.40 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||++.+.+-.|
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~~ 51 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGLF 51 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC
Confidence 589999999999999999988764
No 381
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.31 E-value=0.026 Score=54.86 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=22.1
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
.|+|+|+.|+|||||++.+.+-.|
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~~ 32 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQY 32 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999998764
No 382
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.30 E-value=0.033 Score=61.72 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccc
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
..++.++|++|+||||++..|+...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHH
Confidence 5699999999999999999999766
No 383
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.25 E-value=0.021 Score=54.42 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.+++|.|+.||||||+.+.|....
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 389999999999999999997643
No 384
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.24 E-value=0.023 Score=55.09 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.+++|.|+.||||||+.+.|.-..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 489999999999999999997543
No 385
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.22 E-value=0.023 Score=61.51 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.++|+||+|||||||++.|.+..
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHHH
Confidence 57999999999999999999865
No 386
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.22 E-value=0.021 Score=55.66 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||+|.|.+-.|
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNKF 50 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998764
No 387
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.22 E-value=0.019 Score=55.81 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||++.+.|-.|
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~~ 50 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDEF 50 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 689999999999999999998764
No 388
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.20 E-value=0.022 Score=56.57 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.++.|.|+.||||||+.+.|....
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 489999999999999999998543
No 389
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.20 E-value=0.024 Score=53.04 Aligned_cols=23 Identities=30% Similarity=0.265 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+++|.|+.||||||+.+.|....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997644
No 390
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.20 E-value=0.026 Score=54.74 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=22.1
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccc
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.+-+++|.|+.||||||+.+.|....
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34489999999999999999997643
No 391
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.19 E-value=0.021 Score=54.65 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||++.+.+-.|
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~~ 46 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKRF 46 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC
Confidence 689999999999999999988664
No 392
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.18 E-value=0.014 Score=54.98 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=9.3
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||++.+.+-.|
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~~ 33 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDAF 33 (183)
T ss_dssp EEEEECCCCC--------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 589999999999999999987663
No 393
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.16 E-value=0.022 Score=54.74 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||++.+.+-.|
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~~ 45 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNGY 45 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 689999999999999999998664
No 394
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.16 E-value=0.023 Score=55.76 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGT 63 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (712)
.++|+|+.||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999653
No 395
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.10 E-value=0.022 Score=55.86 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||++.+.+-.|
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~~~ 59 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADGAF 59 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC---
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 689999999999999999998653
No 396
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.08 E-value=0.014 Score=57.13 Aligned_cols=24 Identities=25% Similarity=0.587 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||+|.|.|-.|
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~~ 36 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGRF 36 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCST
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999997653
No 397
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.08 E-value=0.027 Score=55.63 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccc
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+.++.|+|+.||||||+.+.|....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4489999999999999999997654
No 398
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.06 E-value=0.024 Score=57.43 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.+|+|.|+.||||||+.+.|....
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999997743
No 399
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.05 E-value=0.021 Score=55.83 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=22.2
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||++.+.+-.|
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~~ 53 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDCF 53 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999999775
No 400
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.02 E-value=0.023 Score=54.25 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+++|+|+.||||||+.+.|....
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999997643
No 401
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.00 E-value=0.023 Score=56.20 Aligned_cols=24 Identities=29% Similarity=0.243 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.++.|+|+.||||||+.+.|.-..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999997544
No 402
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.00 E-value=0.077 Score=57.31 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=21.7
Q ss_pred ccccEEEEEcCCCCChhHHHHHHhcc
Q 005138 38 LSYAVVSIMGPQSSGKSTLLNHLFGT 63 (712)
Q Consensus 38 ~~g~ivaIiGpNGSGKSTLLn~L~Gl 63 (712)
.+|.++.|.||.|+|||||...++.-
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 45669999999999999999777643
No 403
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.95 E-value=0.023 Score=54.96 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||++.+.+-.|
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~~ 50 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQF 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC
Confidence 589999999999999999998764
No 404
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.93 E-value=0.028 Score=55.24 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=23.2
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccc
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.+..+.|.||.|+|||||++.+....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998876
No 405
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=93.89 E-value=0.027 Score=58.74 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccc
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+..+.|.||+|+|||||+++|++..
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CceEEEECCCCcCHHHHHHHHHHHh
Confidence 4489999999999999999999876
No 406
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.86 E-value=0.025 Score=54.03 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-++|+|+.|+|||||++.+.+-.|
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~~ 43 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDAF 43 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999998764
No 407
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.85 E-value=0.021 Score=59.69 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=18.6
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.+|+|.||+||||||+.+.|....
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999998754
No 408
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.81 E-value=0.03 Score=54.90 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCChhHHHHHHhcc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGT 63 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl 63 (712)
-+++|.|+.||||||+.+.|...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999999765
No 409
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.78 E-value=0.031 Score=57.01 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccc
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+.++.|.|+.||||||+.+.|....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3489999999999999999998753
No 410
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.77 E-value=0.032 Score=52.39 Aligned_cols=26 Identities=27% Similarity=0.223 Sum_probs=21.5
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccc
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.-.+++|.|+.||||||+.+.|....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999997644
No 411
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.77 E-value=0.01 Score=70.64 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=23.3
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccc
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.+..+.|.||+|+|||||.++|++..
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999999987
No 412
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=93.77 E-value=0.03 Score=57.60 Aligned_cols=23 Identities=43% Similarity=0.640 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.++|+|.+|+|||||+|.|.|..
T Consensus 101 ~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 101 RVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTC
T ss_pred heEEeCCCCCCHHHHHHHHhccc
Confidence 79999999999999999999977
No 413
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.71 E-value=0.032 Score=55.45 Aligned_cols=22 Identities=36% Similarity=0.443 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGT 63 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (712)
++.|.|+.||||||+.+.|.-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 414
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.68 E-value=0.031 Score=55.92 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=19.6
Q ss_pred ccEEEEEcCCCCChhHHHHHHhc
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFG 62 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~G 62 (712)
|+.+.|.||+||||||++..+..
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHHh
Confidence 34999999999999998887754
No 415
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=93.66 E-value=0.014 Score=56.05 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=4.4
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGT 63 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (712)
-|+|+|+.|+|||||++.+.|-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999987
No 416
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.66 E-value=0.03 Score=55.07 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCChhHHHHHHhcccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
..++|+|+.|+|||||++.+.+-.|
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4799999999999999999987763
No 417
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.66 E-value=0.031 Score=55.39 Aligned_cols=23 Identities=43% Similarity=0.585 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.|+|+|+.|+|||||+|.+.|..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999999854
No 418
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=93.64 E-value=0.023 Score=55.69 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChhHHHHH-Hhcc
Q 005138 42 VVSIMGPQSSGKSTLLNH-LFGT 63 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~-L~Gl 63 (712)
.|+|+|+.|+|||||+|. +.|.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 589999999999999999 5554
No 419
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.60 E-value=0.029 Score=54.36 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||++.+.+-.|
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~~ 54 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGAF 54 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhhCCC
Confidence 589999999999999999998764
No 420
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=93.56 E-value=0.024 Score=61.53 Aligned_cols=23 Identities=52% Similarity=0.653 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
-|||+|...+|||||+|.|.|..
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~ 96 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTE 96 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999999976
No 421
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.53 E-value=0.033 Score=57.71 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCChhHHHHHHhc
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFG 62 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~G 62 (712)
..+|+|.|+.||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34899999999999999999984
No 422
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.48 E-value=0.036 Score=53.69 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
..+.|.||+|+|||||+++|.+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999876
No 423
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=93.47 E-value=0.033 Score=54.81 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||++.+.+-.|
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~~ 38 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNEF 38 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998765
No 424
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.36 E-value=0.043 Score=53.25 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
..+.|.||.|+|||||++.+....
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999998765
No 425
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.32 E-value=0.042 Score=55.52 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCChhHHHHHHhcc
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGT 63 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl 63 (712)
.-+++|+||.||||||+.+.|.-.
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999999743
No 426
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.30 E-value=0.034 Score=58.22 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=23.3
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccc
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.+..+.|.||+|+|||||++.|.+..
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 45679999999999999999999876
No 427
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.27 E-value=0.035 Score=53.91 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.|+|+|+.|+|||||++.+.+-.
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 68999999999999999998755
No 428
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.22 E-value=0.04 Score=54.15 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGT 63 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (712)
.++|.|+.||||||+.+.|.-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999999753
No 429
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.21 E-value=0.049 Score=50.98 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
..+.|.||.|+|||||++.+....
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 367899999999999999998765
No 430
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.19 E-value=0.038 Score=54.20 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||++.+.+-.|
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~~ 52 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDCY 52 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 689999999999999999988664
No 431
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.12 E-value=0.038 Score=53.60 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-++|+|+.|+|||||++.+.+-.|
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~~ 34 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNKF 34 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999997664
No 432
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.08 E-value=0.19 Score=55.48 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
=+.+.||.|+|||+|.++|++-.
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eeEEECcCCCCHHHHHHHHHHHh
Confidence 57899999999999999999976
No 433
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.94 E-value=0.051 Score=53.62 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccc
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+-++.|+|+.||||||+.+.|....
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4489999999999999999997543
No 434
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.93 E-value=0.048 Score=56.34 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChhHHHHHHhc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFG 62 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~G 62 (712)
++.|.|++||||||+.+.|.-
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999975
No 435
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=92.86 E-value=0.017 Score=55.63 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||+|.|.+-.|
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~~ 58 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDTY 58 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999998653
No 436
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.80 E-value=0.056 Score=53.82 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=23.2
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccc
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+|.++.|.|+.||||||+++.|....
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45699999999999999999998765
No 437
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.77 E-value=0.16 Score=56.11 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
=+.+.||.|+|||+|.++|++-.
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 57899999999999999999876
No 438
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.74 E-value=0.051 Score=58.11 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+++|.||+|||||||.+.|+...
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 89999999999999999998765
No 439
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.65 E-value=0.062 Score=54.04 Aligned_cols=28 Identities=25% Similarity=0.224 Sum_probs=24.0
Q ss_pred cccccEEEEEcCCCCChhHHHHHHhccc
Q 005138 37 GLSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 37 g~~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+.+|.++.|.|+.||||||+.+.|....
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3566799999999999999999998765
No 440
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=92.57 E-value=0.054 Score=56.27 Aligned_cols=56 Identities=29% Similarity=0.316 Sum_probs=32.9
Q ss_pred cEEEEEcCCCCChhHHHHHHhccccCccCCCCCe-eeccCCe-eeccccCCCccchhccccCCCcc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTNFREMDAFKGR-SQTTKGI-WMARCAGIEPCTLIMDLEGTDGR 104 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~f~~m~p~sG~-~~~t~gi-~~~~~~~~~~~~~v~d~~g~~~~ 104 (712)
-.++|+|.+|+|||||+|.|.|.. ....|. .-+|... ++. ......+.|..|....
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~----~~~~~~~~g~T~~~~~~~----~~~~~~l~DtpG~~~~ 178 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKN----IAKTGDRPGITTSQQWVK----VGKELELLDTPGILWP 178 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC----CC------------CCEE----ETTTEEEEECCCCCCS
T ss_pred ceEEEEecCCCchHHHHHHHhcCc----eeecCCCCCeeeeeEEEE----eCCCEEEEECcCcCCC
Confidence 368999999999999999999976 222222 1123221 111 1234567798887544
No 441
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.57 E-value=0.053 Score=53.18 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.+++|.|+.||||||+.+.|....
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 379999999999999999998753
No 442
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.52 E-value=0.067 Score=53.36 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccc
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+..+.|+|+.||||||+.+.|.-..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999997644
No 443
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.52 E-value=0.055 Score=54.55 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=19.7
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccc
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+|.++.|.|+.||||||+++.|....
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34599999999999999999998655
No 444
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.45 E-value=0.063 Score=54.41 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=23.1
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccc
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+|.++.|.|+.||||||+++.|....
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45599999999999999999998765
No 445
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.45 E-value=0.13 Score=56.67 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
=+.+.||.|+|||+|.++|++-.
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999876
No 446
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.39 E-value=0.066 Score=57.08 Aligned_cols=26 Identities=31% Similarity=0.348 Sum_probs=23.4
Q ss_pred ccccEEEEEcCCCCChhHHHHHHhcc
Q 005138 38 LSYAVVSIMGPQSSGKSTLLNHLFGT 63 (712)
Q Consensus 38 ~~g~ivaIiGpNGSGKSTLLn~L~Gl 63 (712)
.+|.++.|.||+|||||||+..++..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 56779999999999999999998875
No 447
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.38 E-value=0.067 Score=53.28 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccc
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
|.++.+.|+.||||||+++.|....
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5599999999999999999998765
No 448
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.37 E-value=0.065 Score=53.68 Aligned_cols=25 Identities=36% Similarity=0.311 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccc
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+.+++|.|+.||||||+.+.|....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4589999999999999999998654
No 449
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=92.33 E-value=0.056 Score=59.04 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.++|+|..|+|||||+|.|.|..
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999976
No 450
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.33 E-value=0.14 Score=56.00 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
=+.+.||.|+|||+|.+++++-.
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHHH
T ss_pred ceEEeCCCCCCHHHHHHHHHHhh
Confidence 37899999999999999999876
No 451
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.31 E-value=0.07 Score=56.50 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.+++|.||+|||||||...|+--.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 489999999999999999997544
No 452
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.27 E-value=0.076 Score=53.15 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccc
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
..|+.|+||.||||+|..+.|+-..
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3499999999999999999887543
No 453
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.26 E-value=0.074 Score=52.70 Aligned_cols=23 Identities=30% Similarity=0.248 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.+.|+||+|||||||...|..-.
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 79999999999999999887654
No 454
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=91.42 E-value=0.026 Score=54.51 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-|+|+|+.|+|||||++.+.+-.|
T Consensus 32 ki~v~G~~~~GKSsli~~l~~~~~ 55 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTTNAF 55 (204)
Confidence 689999999999999999987553
No 455
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.12 E-value=0.063 Score=50.28 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
..+.|.||.|+|||||++.+....
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 367899999999999999998765
No 456
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.11 E-value=0.071 Score=57.07 Aligned_cols=26 Identities=31% Similarity=0.198 Sum_probs=22.7
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccc
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+..+++|+|+.|+|||||++.|.+..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998765
No 457
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=92.08 E-value=0.06 Score=61.28 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCChhHHHHHHhcccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-.|+|+|..|+|||||+|.|.|..+
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~~ 90 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQEV 90 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcc
Confidence 4899999999999999999999874
No 458
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=92.08 E-value=0.067 Score=56.01 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
-++|+|+.|+|||||+|.++|-.
T Consensus 5 KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 5 KLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp EEEEECCTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 68999999999999999988763
No 459
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.04 E-value=0.057 Score=54.91 Aligned_cols=26 Identities=35% Similarity=0.345 Sum_probs=22.7
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccc
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
++.+|+|.|+.||||||+.+.|....
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 44599999999999999999998654
No 460
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=91.96 E-value=0.078 Score=59.05 Aligned_cols=25 Identities=36% Similarity=0.442 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCChhHHHHHHhcccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-.|+|+|+.|+|||||+|.|.|-.+
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~ 249 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDR 249 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHB
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCc
Confidence 3699999999999999999999764
No 461
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.94 E-value=0.079 Score=58.05 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.3
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccc
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
...++.|+|++||||||+.+.|+...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 34699999999999999999987543
No 462
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=91.93 E-value=0.07 Score=59.46 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccc
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
|..++|+|++|+|||||++.|.+-.
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhh
Confidence 3389999999999999999998765
No 463
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.92 E-value=0.077 Score=56.34 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
++.|+||+|||||||.+.|+...
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 79999999999999999998765
No 464
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.91 E-value=0.061 Score=59.39 Aligned_cols=24 Identities=33% Similarity=0.354 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.+++|+|++|+|||||.+.|++..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999999865
No 465
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=91.87 E-value=0.15 Score=55.10 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=22.4
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccc
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
...-+.|.||.|+|||||.++|+...
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhh
Confidence 34579999999999999999997654
No 466
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=91.70 E-value=0.087 Score=52.65 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=23.2
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccc
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+|.++.+.|+.||||||+++.|....
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35599999999999999999998876
No 467
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=91.66 E-value=0.1 Score=58.62 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
-+.|.||+|+|||||.++|....
T Consensus 240 ~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 240 GILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred cEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
No 468
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.63 E-value=0.092 Score=56.08 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=22.5
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccc
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
++.++.|+||.|||||||...|+-..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34489999999999999999998755
No 469
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.62 E-value=0.2 Score=55.19 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
=|.+.||.|+|||+|.++|++-.
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCceECCCCchHHHHHHHHHHHh
Confidence 48999999999999999999876
No 470
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=91.61 E-value=0.087 Score=56.33 Aligned_cols=23 Identities=39% Similarity=0.455 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
-|+|+|..|+|||||+|.|.+-.
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~ 182 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAK 182 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEEC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCC
Confidence 48999999999999999999865
No 471
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.60 E-value=0.2 Score=59.91 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
..+.|.||+|+|||||.+.|....
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999877
No 472
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=91.46 E-value=0.081 Score=57.08 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGT 63 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (712)
.++++|..|+|||||+|.|+|.
T Consensus 164 ~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 164 DVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEcCCCCchHHHHHHHHhh
Confidence 6999999999999999999997
No 473
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=91.39 E-value=0.087 Score=55.73 Aligned_cols=22 Identities=32% Similarity=0.253 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHhcc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGT 63 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl 63 (712)
-+.|.|++|+|||||...|.+.
T Consensus 146 ~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 146 GVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHhc
Confidence 7999999999999999999873
No 474
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=91.38 E-value=0.25 Score=54.65 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccc
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
...++|+|..|+|||||+|.+.|..
T Consensus 195 ~~ki~ivG~~~vGKSslin~l~~~~ 219 (456)
T 4dcu_A 195 VIQFCLIGRPNVGKSSLVNAMLGEE 219 (456)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred cceeEEecCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999999865
No 475
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.38 E-value=0.094 Score=54.98 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=20.8
Q ss_pred EEEEcCCCCChhHHHHHHhccc
Q 005138 43 VSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 43 vaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+.|.||+|+|||||++++.+..
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999876
No 476
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.35 E-value=0.099 Score=51.75 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
++.|+||.||||+|..+.|+-..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999997543
No 477
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.33 E-value=0.099 Score=55.24 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.++.|+||+|||||||...|+...
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCccCHHHHHHHHHHhC
Confidence 388999999999999999998654
No 478
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=91.20 E-value=0.085 Score=55.74 Aligned_cols=26 Identities=12% Similarity=0.171 Sum_probs=22.8
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccc
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.+..+.|.||.|+|||||++.+....
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 44589999999999999999998765
No 479
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.86 E-value=0.19 Score=55.86 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
=+.+.||.|+|||+|.++|++-.
T Consensus 245 GILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHHHH
T ss_pred ceEeeCCCCCcHHHHHHHHHhcc
Confidence 57899999999999999999876
No 480
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=90.81 E-value=0.09 Score=56.73 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.++++|..|+|||||+|.|+|..
T Consensus 162 ~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 162 DVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp CEEEEEBTTSSHHHHHHHHHHHH
T ss_pred eEEEecCCCCChhHHHHHHHhhh
Confidence 69999999999999999999974
No 481
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.67 E-value=0.14 Score=51.46 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=23.0
Q ss_pred ccccEEEEEcCCCCChhHHHHHHhccc
Q 005138 38 LSYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 38 ~~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.+..++.+.|..|+|||||++.|+...
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 345589999999999999999998554
No 482
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=90.64 E-value=0.12 Score=56.92 Aligned_cols=24 Identities=42% Similarity=0.526 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
.|+|+|..++|||||+|.|.|-.+
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~ 26 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKK 26 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999999999999999999763
No 483
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=90.45 E-value=0.12 Score=51.75 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
-+.|.||.|+|||||.+.|+...
T Consensus 41 ~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998865
No 484
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=90.43 E-value=0.13 Score=49.30 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.+.|.||.|+|||||++.+....
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999998754
No 485
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=90.43 E-value=0.13 Score=54.18 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=22.9
Q ss_pred ccccEEEEEcCCCCChhHHHHHHhcc
Q 005138 38 LSYAVVSIMGPQSSGKSTLLNHLFGT 63 (712)
Q Consensus 38 ~~g~ivaIiGpNGSGKSTLLn~L~Gl 63 (712)
.+|.++.|.||+|||||||+..++..
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 45669999999999999999988864
No 486
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=90.37 E-value=0.068 Score=58.89 Aligned_cols=24 Identities=33% Similarity=0.645 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
.++|+|+.|+|||||+|.|.|..+
T Consensus 36 kI~IvG~~~vGKSTLin~L~~~~~ 59 (423)
T 3qq5_A 36 YIVVAGRRNVGKSSFMNALVGQNV 59 (423)
T ss_dssp EEEEECSCSTTTTTTTTSSCC---
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 689999999999999999999774
No 487
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.36 E-value=0.14 Score=57.76 Aligned_cols=24 Identities=33% Similarity=0.329 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCChhHHHHHHhcc
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGT 63 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl 63 (712)
..+|+|+|++|+|||||++.|+..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999943
No 488
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=90.24 E-value=0.12 Score=56.72 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCChhHHHHHHhcccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
-.++|+|..|+|||||+|.|.|-.+
T Consensus 176 ~ki~lvG~~nvGKSSLin~l~~~~~ 200 (436)
T 2hjg_A 176 IQFCLIGRPNVGKSSLVNAMLGEER 200 (436)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTT
T ss_pred cEEEEEcCCCCCHHHHHHHHhCCCc
Confidence 4789999999999999999999764
No 489
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=90.23 E-value=0.15 Score=50.23 Aligned_cols=24 Identities=33% Similarity=0.688 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.+++|=|+-||||||+++.|...+
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 489999999999999999998766
No 490
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=90.14 E-value=0.14 Score=55.74 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.++++|+.|+|||||+|.|.|..
T Consensus 10 ~I~vvG~~~~GKSTLi~~L~~~~ 32 (403)
T 3sjy_A 10 NIGVVGHVDHGKTTLVQAITGIW 32 (403)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 78999999999999999999954
No 491
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=90.04 E-value=0.16 Score=49.17 Aligned_cols=23 Identities=35% Similarity=0.327 Sum_probs=18.8
Q ss_pred ccEEEEEcCCCCChhHHH-HHHhc
Q 005138 40 YAVVSIMGPQSSGKSTLL-NHLFG 62 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLL-n~L~G 62 (712)
|.++.+.||.||||||++ +.+..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 459999999999999997 55443
No 492
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=90.00 E-value=0.11 Score=58.15 Aligned_cols=24 Identities=46% Similarity=0.677 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCChhHHHHHHhccc
Q 005138 41 AVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 41 ~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
-.|+|+|+.|+|||||+|.|.|-.
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~ 257 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQE 257 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC---
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 359999999999999999999975
No 493
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=89.96 E-value=0.14 Score=56.02 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+++|.||+|||||||.+.|+-..
T Consensus 4 ~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHHHC
Confidence 78999999999999999987544
No 494
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=89.86 E-value=0.16 Score=46.76 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChhHHHHHHhccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
-|.|.||.|+|||+|.+.|....
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSS
T ss_pred CEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999998765
No 495
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=89.79 E-value=0.11 Score=55.00 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChhHHHHHHhcccc
Q 005138 42 VVSIMGPQSSGKSTLLNHLFGTNF 65 (712)
Q Consensus 42 ivaIiGpNGSGKSTLLn~L~Gl~f 65 (712)
.|+|+|+.|+|||||++.+.+-.|
T Consensus 167 kI~ivG~~~vGKSsLl~~l~~~~~ 190 (329)
T 3o47_A 167 RILMVGLDAAGKTTILYKLKLGEI 190 (329)
T ss_dssp EEEEEESTTSSHHHHHHHTCSSCC
T ss_pred eEEEECCCCccHHHHHHHHhCCCC
Confidence 689999999999999999988764
No 496
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=89.70 E-value=0.079 Score=53.65 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=20.1
Q ss_pred EEEEcCCCCChhHHHHHHhccc
Q 005138 43 VSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 43 vaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
+.|.||.|+|||||+++|++..
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 6799999999999999999865
No 497
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=89.67 E-value=0.17 Score=52.08 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=22.5
Q ss_pred cccEEEEEcCCCCChhHHHHHHhccc
Q 005138 39 SYAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 39 ~g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
.+..+.|.||.|+|||||.+.++...
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34478999999999999999988766
No 498
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=89.45 E-value=0.16 Score=51.42 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.4
Q ss_pred EEEEEcCC---------CCChhHHHHHHhcc
Q 005138 42 VVSIMGPQ---------SSGKSTLLNHLFGT 63 (712)
Q Consensus 42 ivaIiGpN---------GSGKSTLLn~L~Gl 63 (712)
-|+|+|.. |+|||||+|.+.+-
T Consensus 21 ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 21 NISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp EEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred EEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 58999999 99999999999983
No 499
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.38 E-value=0.25 Score=48.74 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=19.5
Q ss_pred ccccEEEEEcCCCCChhHHHHHH
Q 005138 38 LSYAVVSIMGPQSSGKSTLLNHL 60 (712)
Q Consensus 38 ~~g~ivaIiGpNGSGKSTLLn~L 60 (712)
.+|.++.|.|+.|+|||||+-.+
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~ 50 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHH
Confidence 45569999999999999997654
No 500
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=89.34 E-value=0.19 Score=53.27 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCChhHHHHHHhccc
Q 005138 40 YAVVSIMGPQSSGKSTLLNHLFGTN 64 (712)
Q Consensus 40 g~ivaIiGpNGSGKSTLLn~L~Gl~ 64 (712)
...+.|.||.|+|||||++.+....
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4489999999999999999998764
Done!