Query 005139
Match_columns 712
No_of_seqs 1499 out of 3713
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 16:34:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005139.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005139hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 3E-35 1E-39 311.9 37.7 378 226-684 4-388 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 5E-36 1.7E-40 317.8 30.0 383 194-657 6-388 (388)
3 2xpi_A Anaphase-promoting comp 100.0 1E-32 3.5E-37 309.9 32.0 443 189-702 86-582 (597)
4 2gw1_A Mitochondrial precursor 100.0 2.5E-30 8.7E-35 284.4 38.3 378 219-657 4-464 (514)
5 3fp2_A TPR repeat-containing p 100.0 5E-30 1.7E-34 283.9 37.3 377 219-657 23-477 (537)
6 2xpi_A Anaphase-promoting comp 100.0 1.4E-30 4.8E-35 292.4 32.3 392 190-653 153-595 (597)
7 2gw1_A Mitochondrial precursor 100.0 1.9E-30 6.6E-35 285.4 28.6 403 190-652 9-493 (514)
8 4g1t_A Interferon-induced prot 100.0 5.2E-30 1.8E-34 279.0 31.6 407 238-702 27-462 (472)
9 3sf4_A G-protein-signaling mod 100.0 2E-28 6.9E-33 260.4 40.2 345 265-626 9-373 (406)
10 2y4t_A DNAJ homolog subfamily 100.0 1E-28 3.5E-33 266.9 37.1 353 209-657 14-378 (450)
11 3sf4_A G-protein-signaling mod 100.0 5.8E-28 2E-32 256.9 41.4 333 308-657 9-362 (406)
12 3fp2_A TPR repeat-containing p 100.0 3.1E-29 1.1E-33 277.5 32.4 385 188-629 26-491 (537)
13 4g1t_A Interferon-induced prot 100.0 8.7E-30 3E-34 277.2 21.8 381 215-649 45-471 (472)
14 3ieg_A DNAJ homolog subfamily 100.0 8.5E-28 2.9E-32 250.8 34.7 337 265-657 3-355 (359)
15 2y4t_A DNAJ homolog subfamily 100.0 4.8E-27 1.7E-31 253.8 37.4 342 307-704 25-416 (450)
16 4a1s_A PINS, partner of inscut 100.0 8.9E-27 3E-31 248.5 38.1 315 262-591 45-376 (411)
17 3ro2_A PINS homolog, G-protein 100.0 2.6E-26 8.8E-31 236.9 39.0 313 265-592 5-337 (338)
18 3ieg_A DNAJ homolog subfamily 100.0 2.7E-26 9.3E-31 239.3 39.1 326 308-684 3-355 (359)
19 4a1s_A PINS, partner of inscut 100.0 3.8E-26 1.3E-30 243.6 38.8 311 307-632 47-375 (411)
20 3ro2_A PINS homolog, G-protein 100.0 1.6E-25 5.6E-30 230.8 39.4 309 309-632 6-335 (338)
21 1fch_A Peroxisomal targeting s 100.0 5.6E-27 1.9E-31 245.9 23.8 318 273-636 33-366 (368)
22 2xm6_A Protein corresponding t 99.9 1E-24 3.6E-29 238.1 38.8 381 218-702 36-470 (490)
23 3hym_B Cell division cycle pro 99.9 5.3E-26 1.8E-30 234.3 25.9 306 213-575 14-322 (330)
24 3hym_B Cell division cycle pro 99.9 1.3E-25 4.4E-30 231.4 28.1 293 310-657 24-320 (330)
25 3ulq_A Response regulator aspa 99.9 4.6E-24 1.6E-28 225.2 38.9 353 219-593 10-374 (383)
26 1fch_A Peroxisomal targeting s 99.9 5.6E-26 1.9E-30 238.3 22.8 316 230-592 34-364 (368)
27 3ulq_A Response regulator aspa 99.9 1.5E-23 5.1E-28 221.3 41.5 351 264-636 11-375 (383)
28 4eqf_A PEX5-related protein; a 99.9 2.6E-25 8.8E-30 233.2 22.7 288 308-635 65-362 (365)
29 2xm6_A Protein corresponding t 99.9 8.6E-24 2.9E-28 230.9 35.0 356 200-653 56-451 (490)
30 4eqf_A PEX5-related protein; a 99.9 9.4E-25 3.2E-29 228.9 23.9 285 265-589 65-358 (365)
31 3q15_A PSP28, response regulat 99.9 1.7E-22 5.7E-27 212.8 39.5 340 228-591 19-369 (378)
32 3cv0_A Peroxisome targeting si 99.9 1.7E-23 5.7E-28 215.3 25.3 289 302-636 15-322 (327)
33 3q15_A PSP28, response regulat 99.9 1.2E-21 4E-26 206.3 39.7 338 275-635 22-371 (378)
34 3cv0_A Peroxisome targeting si 99.9 4.1E-23 1.4E-27 212.3 26.4 290 264-593 20-321 (327)
35 3nf1_A KLC 1, kinesin light ch 99.9 3.5E-22 1.2E-26 203.7 32.0 280 342-630 19-308 (311)
36 3nf1_A KLC 1, kinesin light ch 99.9 5E-22 1.7E-26 202.5 32.0 286 209-505 15-309 (311)
37 3u4t_A TPR repeat-containing p 99.9 1.5E-22 5.1E-27 202.4 22.4 261 351-654 4-267 (272)
38 1hz4_A MALT regulatory protein 99.9 2.5E-20 8.7E-25 195.7 40.2 310 307-632 13-325 (373)
39 1hz4_A MALT regulatory protein 99.9 1.3E-20 4.3E-25 198.0 37.8 313 264-592 13-327 (373)
40 3uq3_A Heat shock protein STI1 99.9 2.4E-21 8.1E-26 191.7 28.4 253 263-566 3-255 (258)
41 3uq3_A Heat shock protein STI1 99.9 4E-21 1.4E-25 190.0 29.9 254 347-651 2-256 (258)
42 3edt_B KLC 2, kinesin light ch 99.9 1.7E-21 5.7E-26 195.5 26.3 269 318-587 11-281 (283)
43 2h6f_A Protein farnesyltransfe 99.9 6.3E-22 2.2E-26 206.3 21.9 255 346-655 93-366 (382)
44 3edt_B KLC 2, kinesin light ch 99.9 8.1E-21 2.8E-25 190.5 29.4 257 442-700 11-282 (283)
45 3u4t_A TPR repeat-containing p 99.9 3.4E-21 1.2E-25 192.5 22.7 248 266-550 4-254 (272)
46 2ooe_A Cleavage stimulation fa 99.9 1.2E-19 4E-24 200.1 36.1 415 215-702 7-495 (530)
47 2h6f_A Protein farnesyltransfe 99.9 5.1E-21 1.8E-25 199.4 23.8 234 427-702 92-351 (382)
48 3e4b_A ALGK; tetratricopeptide 99.9 4.5E-21 1.5E-25 206.2 19.2 377 225-702 7-424 (452)
49 2pl2_A Hypothetical conserved 99.9 1.1E-20 3.6E-25 182.1 18.6 197 265-501 5-212 (217)
50 2pl2_A Hypothetical conserved 99.9 1.8E-20 6.1E-25 180.4 19.6 197 393-628 6-213 (217)
51 1qqe_A Vesicular transport pro 99.8 1.4E-19 4.9E-24 182.8 24.6 250 365-652 32-284 (292)
52 3mkr_A Coatomer subunit epsilo 99.8 1.8E-18 6.2E-23 174.2 29.1 255 273-587 7-264 (291)
53 3mkr_A Coatomer subunit epsilo 99.8 2.2E-18 7.6E-23 173.5 28.5 261 228-550 6-268 (291)
54 1ouv_A Conserved hypothetical 99.8 1.6E-18 5.6E-23 173.3 27.1 226 217-503 2-251 (273)
55 1ouv_A Conserved hypothetical 99.8 2.9E-18 1E-22 171.4 27.9 225 347-629 3-251 (273)
56 3e4b_A ALGK; tetratricopeptide 99.8 1.9E-20 6.6E-25 201.3 11.9 346 195-629 11-387 (452)
57 2q7f_A YRRB protein; TPR, prot 99.8 3.6E-19 1.2E-23 174.3 19.7 219 391-655 22-240 (243)
58 1xi4_A Clathrin heavy chain; a 99.8 5.1E-17 1.7E-21 185.0 38.2 349 225-689 989-1375(1630)
59 2ooe_A Cleavage stimulation fa 99.8 2.2E-17 7.7E-22 181.9 34.0 380 262-702 10-457 (530)
60 1qqe_A Vesicular transport pro 99.8 5.5E-18 1.9E-22 171.1 26.5 234 323-586 32-268 (292)
61 1xnf_A Lipoprotein NLPI; TPR, 99.8 5.7E-19 2E-23 176.4 18.3 252 234-540 18-269 (275)
62 1xnf_A Lipoprotein NLPI; TPR, 99.8 5E-19 1.7E-23 176.9 17.5 259 271-581 11-269 (275)
63 3vtx_A MAMA; tetratricopeptide 99.8 5E-18 1.7E-22 158.6 22.0 171 432-642 5-175 (184)
64 2q7f_A YRRB protein; TPR, prot 99.8 7.3E-19 2.5E-23 172.1 16.9 220 264-531 22-241 (243)
65 2ifu_A Gamma-SNAP; membrane fu 99.8 7.9E-18 2.7E-22 171.3 24.9 248 362-621 3-253 (307)
66 2ifu_A Gamma-SNAP; membrane fu 99.8 2E-17 6.9E-22 168.3 26.7 215 405-629 4-223 (307)
67 2ho1_A Type 4 fimbrial biogene 99.8 1.1E-17 3.9E-22 164.7 23.8 207 307-550 36-242 (252)
68 2ho1_A Type 4 fimbrial biogene 99.8 1.3E-17 4.3E-22 164.4 22.8 211 392-646 37-247 (252)
69 4abn_A Tetratricopeptide repea 99.8 5.9E-18 2E-22 183.1 21.7 220 328-584 81-318 (474)
70 4abn_A Tetratricopeptide repea 99.8 2.9E-18 9.9E-23 185.5 19.1 235 222-499 55-317 (474)
71 3vtx_A MAMA; tetratricopeptide 99.8 1.3E-17 4.4E-22 155.8 19.8 171 349-550 4-174 (184)
72 1xi4_A Clathrin heavy chain; a 99.8 6.4E-16 2.2E-20 176.1 36.9 334 228-683 1056-1415(1630)
73 2vq2_A PILW, putative fimbrial 99.8 7.4E-17 2.5E-21 155.5 25.4 207 307-549 7-214 (225)
74 2vq2_A PILW, putative fimbrial 99.8 6.7E-17 2.3E-21 155.8 24.7 215 390-647 6-221 (225)
75 4i17_A Hypothetical protein; T 99.8 1.3E-17 4.3E-22 161.9 17.8 188 433-653 8-225 (228)
76 4gyw_A UDP-N-acetylglucosamine 99.8 1.3E-17 4.5E-22 187.2 20.2 176 426-633 3-178 (723)
77 4gyw_A UDP-N-acetylglucosamine 99.7 2.1E-17 7.2E-22 185.6 19.5 174 346-550 5-178 (723)
78 3qky_A Outer membrane assembly 99.7 4.7E-16 1.6E-20 154.2 23.9 223 262-537 12-252 (261)
79 4i17_A Hypothetical protein; T 99.7 2.5E-16 8.6E-21 152.6 20.0 189 265-484 7-224 (228)
80 3qky_A Outer membrane assembly 99.7 1E-15 3.6E-20 151.7 23.8 205 428-657 11-247 (261)
81 2ond_A Cleavage stimulation fa 99.7 9.8E-16 3.4E-20 155.9 23.0 257 367-677 33-305 (308)
82 4b4t_Q 26S proteasome regulato 99.7 1.4E-14 4.7E-19 155.1 31.2 240 353-597 7-255 (434)
83 3gw4_A Uncharacterized protein 99.7 3.7E-15 1.3E-19 141.2 23.2 194 403-609 3-196 (203)
84 2ond_A Cleavage stimulation fa 99.7 2.8E-15 9.5E-20 152.5 21.9 225 282-550 33-274 (308)
85 3gw4_A Uncharacterized protein 99.7 5.6E-15 1.9E-19 139.9 22.3 195 442-651 2-196 (203)
86 4b4t_Q 26S proteasome regulato 99.7 3.9E-14 1.3E-18 151.6 30.9 241 395-642 7-258 (434)
87 2qfc_A PLCR protein; TPR, HTH, 99.7 5.1E-15 1.7E-19 149.4 21.9 195 394-593 77-272 (293)
88 3u3w_A Transcriptional activat 99.7 5.6E-15 1.9E-19 149.1 21.9 194 393-594 76-273 (293)
89 2qfc_A PLCR protein; TPR, HTH, 99.7 2.4E-14 8.2E-19 144.5 25.7 198 263-466 73-271 (293)
90 3u3w_A Transcriptional activat 99.6 1.5E-14 5.1E-19 146.0 23.4 197 262-466 72-271 (293)
91 3urz_A Uncharacterized protein 99.6 1.2E-14 3.9E-19 138.6 20.2 165 432-629 4-186 (208)
92 3as5_A MAMA; tetratricopeptide 99.6 8E-15 2.7E-19 136.2 17.9 170 428-629 4-173 (186)
93 3as5_A MAMA; tetratricopeptide 99.6 2.6E-14 9.1E-19 132.7 20.4 169 391-589 7-175 (186)
94 1b89_A Protein (clathrin heavy 99.6 6.2E-16 2.1E-20 159.1 8.7 321 233-657 15-343 (449)
95 4ga2_A E3 SUMO-protein ligase 99.6 2.2E-15 7.5E-20 135.2 10.5 147 397-573 2-149 (150)
96 3urz_A Uncharacterized protein 99.6 3.5E-14 1.2E-18 135.2 19.5 161 517-702 4-189 (208)
97 1b89_A Protein (clathrin heavy 99.6 6.7E-16 2.3E-20 158.8 7.8 278 316-689 11-302 (449)
98 2pzi_A Probable serine/threoni 99.6 6.8E-15 2.3E-19 166.2 16.8 202 319-552 402-604 (681)
99 2pzi_A Probable serine/threoni 99.6 5.5E-15 1.9E-19 167.0 15.4 192 276-507 402-602 (681)
100 4ga2_A E3 SUMO-protein ligase 99.6 2.4E-15 8.3E-20 134.9 9.6 147 479-657 2-149 (150)
101 3n71_A Histone lysine methyltr 99.6 7.4E-14 2.5E-18 149.1 21.9 152 270-422 314-465 (490)
102 3ro3_A PINS homolog, G-protein 99.6 9.3E-14 3.2E-18 125.8 19.6 158 427-590 4-161 (164)
103 3n71_A Histone lysine methyltr 99.6 5.9E-14 2E-18 149.9 20.9 157 224-383 312-468 (490)
104 2yhc_A BAMD, UPF0169 lipoprote 99.6 2.3E-13 8E-18 131.3 22.4 181 433-629 5-213 (225)
105 4e6h_A MRNA 3'-END-processing 99.6 3.7E-11 1.3E-15 133.3 42.7 434 209-702 54-573 (679)
106 3ro3_A PINS homolog, G-protein 99.6 3.2E-13 1.1E-17 122.2 21.7 157 346-506 5-161 (164)
107 2yhc_A BAMD, UPF0169 lipoprote 99.6 1.4E-13 4.8E-18 132.9 19.3 182 350-550 4-217 (225)
108 3dra_A Protein farnesyltransfe 99.5 2.1E-12 7E-17 129.0 24.0 217 444-701 45-290 (306)
109 4gco_A Protein STI-1; structur 99.5 4E-13 1.4E-17 116.2 15.2 117 513-652 9-125 (126)
110 4gco_A Protein STI-1; structur 99.5 5.1E-13 1.7E-17 115.6 14.8 117 427-567 8-124 (126)
111 2r5s_A Uncharacterized protein 99.5 2.7E-13 9.1E-18 125.3 13.4 170 217-420 2-172 (176)
112 3dra_A Protein farnesyltransfe 99.5 5.9E-12 2E-16 125.7 23.1 238 362-650 45-301 (306)
113 3rjv_A Putative SEL1 repeat pr 99.5 2.5E-12 8.5E-17 122.7 18.1 175 282-503 3-197 (212)
114 3qou_A Protein YBBN; thioredox 99.4 1.5E-12 5.2E-17 130.6 17.0 170 218-420 114-283 (287)
115 3qou_A Protein YBBN; thioredox 99.4 1.5E-12 5.2E-17 130.6 16.4 169 347-546 114-284 (287)
116 2vsy_A XCC0866; transferase, g 99.4 6.8E-13 2.3E-17 147.2 14.8 153 445-629 2-157 (568)
117 3rjv_A Putative SEL1 repeat pr 99.4 1.5E-12 5E-17 124.3 15.0 174 326-546 4-197 (212)
118 2r5s_A Uncharacterized protein 99.4 5.8E-13 2E-17 123.0 11.4 167 350-546 6-173 (176)
119 4f3v_A ESX-1 secretion system 99.4 3.1E-13 1.1E-17 131.5 9.8 219 395-649 10-248 (282)
120 4f3v_A ESX-1 secretion system 99.4 1.2E-11 4E-16 120.4 19.9 220 222-480 8-247 (282)
121 3qww_A SET and MYND domain-con 99.4 5.9E-12 2E-16 132.2 19.1 121 529-649 310-431 (433)
122 3qwp_A SET and MYND domain-con 99.4 4.9E-12 1.7E-16 133.2 18.1 131 525-655 295-426 (429)
123 4gcn_A Protein STI-1; structur 99.4 5E-12 1.7E-16 109.5 14.9 108 471-587 5-112 (127)
124 4gcn_A Protein STI-1; structur 99.4 6E-12 2.1E-16 109.0 15.2 109 429-547 5-113 (127)
125 3gyz_A Chaperone protein IPGC; 99.4 5.7E-13 2E-17 118.8 8.8 107 426-549 30-136 (151)
126 3gyz_A Chaperone protein IPGC; 99.4 2.1E-12 7.3E-17 115.1 11.5 102 470-587 32-133 (151)
127 2vsy_A XCC0866; transferase, g 99.4 5.2E-12 1.8E-16 140.1 17.2 157 363-550 2-161 (568)
128 3qww_A SET and MYND domain-con 99.4 1.9E-11 6.6E-16 128.3 18.6 123 276-399 309-431 (433)
129 1p5q_A FKBP52, FK506-binding p 99.3 3E-12 1E-16 131.5 11.8 161 363-548 126-296 (336)
130 3qwp_A SET and MYND domain-con 99.3 3.8E-11 1.3E-15 126.5 20.0 132 272-404 294-425 (429)
131 1p5q_A FKBP52, FK506-binding p 99.3 6E-12 2.1E-16 129.2 13.4 164 199-380 125-295 (336)
132 2fo7_A Synthetic consensus TPR 99.3 4E-11 1.4E-15 104.2 16.9 131 433-587 2-132 (136)
133 1a17_A Serine/threonine protei 99.3 6.6E-11 2.3E-15 107.4 18.9 141 430-592 11-151 (166)
134 2fo7_A Synthetic consensus TPR 99.3 2E-11 6.9E-16 106.2 14.6 132 394-548 3-134 (136)
135 2vgx_A Chaperone SYCD; alterna 99.3 8E-12 2.7E-16 111.4 11.7 108 426-550 15-122 (148)
136 3upv_A Heat shock protein STI1 99.3 5E-11 1.7E-15 103.0 16.3 122 430-569 2-123 (126)
137 1hh8_A P67PHOX, NCF-2, neutrop 99.3 1.8E-11 6.3E-16 116.6 14.4 141 392-549 6-153 (213)
138 1a17_A Serine/threonine protei 99.3 6.9E-11 2.4E-15 107.3 17.4 140 390-550 11-150 (166)
139 2hr2_A Hypothetical protein; a 99.3 8E-11 2.7E-15 103.5 16.6 128 431-560 10-145 (159)
140 3q7a_A Farnesyltransferase alp 99.3 1.9E-10 6.4E-15 115.8 21.6 232 429-701 51-334 (349)
141 2c2l_A CHIP, carboxy terminus 99.3 7.3E-12 2.5E-16 125.1 10.4 195 265-503 4-199 (281)
142 3dss_A Geranylgeranyl transfer 99.3 9.6E-10 3.3E-14 110.2 25.6 224 318-587 39-304 (331)
143 3dss_A Geranylgeranyl transfer 99.3 2E-09 6.7E-14 108.0 27.0 239 361-653 40-320 (331)
144 3upv_A Heat shock protein STI1 99.3 1E-10 3.4E-15 101.0 15.5 122 516-654 3-124 (126)
145 2fbn_A 70 kDa peptidylprolyl i 99.3 1.9E-11 6.5E-16 115.1 11.7 158 355-537 9-176 (198)
146 4e6h_A MRNA 3'-END-processing 99.3 4.6E-09 1.6E-13 116.6 32.4 408 239-701 49-535 (679)
147 1hh8_A P67PHOX, NCF-2, neutrop 99.3 1.4E-10 4.8E-15 110.4 17.7 136 265-420 6-149 (213)
148 2vgx_A Chaperone SYCD; alterna 99.3 4.1E-11 1.4E-15 106.8 12.9 113 452-588 7-119 (148)
149 2fbn_A 70 kDa peptidylprolyl i 99.3 2.9E-11 9.8E-16 113.9 12.1 155 478-657 8-171 (198)
150 2xcb_A PCRH, regulatory protei 99.3 6.7E-11 2.3E-15 104.6 13.7 108 426-550 12-119 (142)
151 2c2l_A CHIP, carboxy terminus 99.2 3.3E-11 1.1E-15 120.3 12.8 170 432-628 4-198 (281)
152 2hr2_A Hypothetical protein; a 99.2 7.9E-11 2.7E-15 103.5 13.1 113 516-629 10-131 (159)
153 3sz7_A HSC70 cochaperone (SGT) 99.2 2.2E-10 7.5E-15 104.1 16.3 108 426-550 5-112 (164)
154 2lni_A Stress-induced-phosphop 99.2 1.2E-10 4E-15 101.2 13.5 124 511-657 10-133 (133)
155 3q7a_A Farnesyltransferase alp 99.2 1.2E-09 4.3E-14 109.8 21.8 238 310-586 56-330 (349)
156 2vyi_A SGTA protein; chaperone 99.2 2.4E-10 8.3E-15 98.7 14.6 124 427-574 7-130 (131)
157 3rkv_A Putative peptidylprolyl 99.2 2E-10 6.9E-15 104.1 14.6 126 390-532 9-147 (162)
158 2lni_A Stress-induced-phosphop 99.2 1.7E-10 5.7E-15 100.3 13.2 123 427-573 11-133 (133)
159 3sz7_A HSC70 cochaperone (SGT) 99.2 4.2E-10 1.4E-14 102.2 16.1 108 261-385 7-114 (164)
160 2vyi_A SGTA protein; chaperone 99.2 6.3E-10 2.2E-14 96.0 15.9 122 513-657 8-129 (131)
161 1kt0_A FKBP51, 51 kDa FK506-bi 99.2 6.5E-11 2.2E-15 126.9 11.0 152 238-414 250-407 (457)
162 1kt0_A FKBP51, 51 kDa FK506-bi 99.2 8.6E-11 2.9E-15 126.0 11.9 156 199-372 246-407 (457)
163 2xcb_A PCRH, regulatory protei 99.2 1.5E-10 5.2E-15 102.3 11.5 112 209-339 6-117 (142)
164 3rkv_A Putative peptidylprolyl 99.2 7.8E-10 2.7E-14 100.2 16.3 127 515-657 9-147 (162)
165 1na0_A Designed protein CTPR3; 99.1 1.6E-09 5.4E-14 92.6 15.7 118 516-656 8-125 (125)
166 3q49_B STIP1 homology and U bo 99.1 8.7E-10 3E-14 96.4 14.2 105 429-550 6-110 (137)
167 3mv2_B Coatomer subunit epsilo 99.1 9.1E-09 3.1E-13 101.5 22.4 249 273-587 21-282 (310)
168 2e2e_A Formate-dependent nitri 99.1 3.8E-10 1.3E-14 103.9 12.0 122 484-629 20-144 (177)
169 1hxi_A PEX5, peroxisome target 99.1 5E-10 1.7E-14 95.8 11.6 100 434-550 19-118 (121)
170 2e2e_A Formate-dependent nitri 99.1 2.9E-10 9.9E-15 104.7 10.7 122 442-587 20-144 (177)
171 1na0_A Designed protein CTPR3; 99.1 2.1E-09 7.1E-14 91.8 15.4 118 431-572 8-125 (125)
172 1wao_1 Serine/threonine protei 99.1 1.8E-11 6E-16 131.9 2.6 179 431-633 5-201 (477)
173 1wao_1 Serine/threonine protei 99.1 3.2E-11 1.1E-15 129.9 4.1 177 391-590 5-200 (477)
174 1ihg_A Cyclophilin 40; ppiase 99.1 1.1E-09 3.8E-14 113.6 15.4 129 394-539 225-363 (370)
175 1elr_A TPR2A-domain of HOP; HO 99.1 1.7E-09 5.7E-14 93.4 13.9 123 430-570 2-124 (131)
176 1elr_A TPR2A-domain of HOP; HO 99.1 4.7E-09 1.6E-13 90.5 16.6 124 516-656 3-126 (131)
177 3mv2_B Coatomer subunit epsilo 99.1 1.4E-08 4.7E-13 100.2 20.7 252 200-504 26-283 (310)
178 3q49_B STIP1 homology and U bo 99.1 2.2E-09 7.5E-14 93.8 13.6 101 392-506 9-109 (137)
179 1hxi_A PEX5, peroxisome target 99.0 1.1E-09 3.8E-14 93.6 10.9 100 267-383 19-118 (121)
180 1elw_A TPR1-domain of HOP; HOP 99.0 4E-09 1.4E-13 89.0 14.0 114 516-652 3-116 (118)
181 1ihg_A Cyclophilin 40; ppiase 99.0 2E-09 6.9E-14 111.6 14.6 132 432-579 223-362 (370)
182 1elw_A TPR1-domain of HOP; HOP 99.0 4E-09 1.4E-13 89.0 13.7 112 432-567 4-115 (118)
183 2xev_A YBGF; tetratricopeptide 99.0 1.4E-08 4.7E-13 87.6 15.9 102 519-629 4-105 (129)
184 1dce_A Protein (RAB geranylger 99.0 7.2E-09 2.5E-13 113.4 16.9 174 444-657 40-241 (567)
185 2dba_A Smooth muscle cell asso 99.0 8.8E-09 3E-13 91.1 14.2 123 214-360 21-143 (148)
186 2xev_A YBGF; tetratricopeptide 99.0 2.3E-08 7.8E-13 86.2 16.4 103 394-504 4-106 (129)
187 2if4_A ATFKBP42; FKBP-like, al 99.0 1.2E-09 4E-14 112.1 9.4 132 433-588 180-329 (338)
188 2if4_A ATFKBP42; FKBP-like, al 98.9 9.6E-10 3.3E-14 112.8 7.8 142 392-550 179-332 (338)
189 2dba_A Smooth muscle cell asso 98.9 1.1E-08 3.7E-13 90.5 13.7 116 392-527 28-143 (148)
190 1dce_A Protein (RAB geranylger 98.9 8.8E-09 3E-13 112.7 13.6 177 277-492 40-244 (567)
191 2kck_A TPR repeat; tetratricop 98.9 1.9E-09 6.4E-14 90.2 5.5 103 431-548 5-108 (112)
192 3k9i_A BH0479 protein; putativ 98.9 8E-09 2.7E-13 87.6 9.5 93 444-550 2-94 (117)
193 3k9i_A BH0479 protein; putativ 98.9 5.1E-09 1.7E-13 88.8 8.2 92 404-506 2-93 (117)
194 1zu2_A Mitochondrial import re 98.8 6.6E-09 2.3E-13 91.1 7.9 90 444-550 14-124 (158)
195 2kck_A TPR repeat; tetratricop 98.8 4E-09 1.4E-13 88.1 5.0 100 265-381 6-108 (112)
196 2uy1_A Cleavage stimulation fa 98.8 4.2E-06 1.4E-10 90.0 29.3 362 237-698 10-412 (493)
197 1zu2_A Mitochondrial import re 98.7 3.6E-08 1.2E-12 86.4 9.2 99 528-649 13-132 (158)
198 1na3_A Designed protein CTPR2; 98.7 1.7E-07 5.8E-12 74.8 11.4 87 428-531 5-91 (91)
199 2kat_A Uncharacterized protein 98.7 2.5E-07 8.4E-12 77.9 12.1 87 282-385 2-88 (115)
200 1na3_A Designed protein CTPR2; 98.6 2.6E-07 8.9E-12 73.7 11.7 85 556-656 7-91 (91)
201 2l6j_A TPR repeat-containing p 98.6 1.4E-08 4.9E-13 84.7 4.0 99 432-541 4-102 (111)
202 2kat_A Uncharacterized protein 98.6 2.6E-07 9E-12 77.7 10.4 84 450-550 3-86 (115)
203 2uy1_A Cleavage stimulation fa 98.5 2.3E-05 7.8E-10 84.2 26.7 324 201-589 28-415 (493)
204 2l6j_A TPR repeat-containing p 98.5 4.3E-07 1.5E-11 75.6 9.8 84 558-657 4-93 (111)
205 1klx_A Cysteine rich protein B 98.5 7E-07 2.4E-11 77.9 11.0 110 488-629 9-126 (138)
206 3ma5_A Tetratricopeptide repea 98.4 1.4E-06 4.6E-11 71.2 10.8 69 309-385 8-76 (100)
207 3ma5_A Tetratricopeptide repea 98.4 7.8E-07 2.7E-11 72.7 9.3 72 470-550 3-74 (100)
208 1klx_A Cysteine rich protein B 98.4 1.8E-06 6.1E-11 75.3 11.7 109 237-379 10-126 (138)
209 3txn_A 26S proteasome regulato 98.4 0.0003 1E-08 71.8 28.3 212 433-657 20-235 (394)
210 2kc7_A BFR218_protein; tetratr 98.4 1.2E-06 4.1E-11 71.2 8.8 90 436-550 4-94 (99)
211 3txn_A 26S proteasome regulato 98.3 0.00022 7.5E-09 72.8 25.0 211 394-615 21-235 (394)
212 2kc7_A BFR218_protein; tetratr 98.2 2.7E-06 9.3E-11 69.0 7.9 92 269-384 4-95 (99)
213 2v5f_A Prolyl 4-hydroxylase su 98.2 2.1E-05 7.2E-10 64.5 12.3 83 559-650 6-88 (104)
214 2v5f_A Prolyl 4-hydroxylase su 98.1 3.9E-05 1.3E-09 62.9 11.8 81 393-481 6-87 (104)
215 3ly7_A Transcriptional activat 98.1 9.9E-05 3.4E-09 74.0 16.8 127 489-642 214-344 (372)
216 4g26_A Pentatricopeptide repea 98.1 0.00025 8.7E-09 76.1 21.0 168 434-629 28-204 (501)
217 4g26_A Pentatricopeptide repea 98.0 0.00022 7.4E-09 76.6 18.6 168 352-546 28-204 (501)
218 3u64_A Protein TP_0956; tetrat 98.0 0.0012 4E-08 63.5 21.3 106 428-550 148-273 (301)
219 3ly7_A Transcriptional activat 98.0 0.0001 3.5E-09 74.0 14.7 134 435-587 199-339 (372)
220 4b4t_P 26S proteasome regulato 97.8 0.0077 2.6E-07 63.3 25.9 218 406-632 30-250 (445)
221 3u64_A Protein TP_0956; tetrat 97.7 0.0012 4.2E-08 63.3 17.2 83 324-421 179-269 (301)
222 3ffl_A Anaphase-promoting comp 97.7 0.0004 1.4E-08 60.3 12.0 111 265-375 20-147 (167)
223 3bee_A Putative YFRE protein; 97.7 0.00024 8.1E-09 56.5 9.5 67 429-503 3-72 (93)
224 3ffl_A Anaphase-promoting comp 97.7 0.00071 2.4E-08 58.8 12.9 113 220-333 19-147 (167)
225 3bee_A Putative YFRE protein; 97.7 0.00028 9.6E-09 56.1 9.8 70 217-295 2-73 (93)
226 1pc2_A Mitochondria fission pr 97.5 0.00095 3.3E-08 57.6 11.7 83 558-654 32-117 (152)
227 4b4t_P 26S proteasome regulato 97.5 0.021 7.3E-07 59.9 24.0 221 363-593 29-253 (445)
228 1pc2_A Mitochondria fission pr 97.4 0.0016 5.6E-08 56.2 11.9 67 430-503 30-100 (152)
229 4h7y_A Dual specificity protei 96.9 0.013 4.3E-07 49.8 11.3 107 433-549 14-126 (161)
230 1nzn_A CGI-135 protein, fissio 96.7 0.01 3.5E-07 49.2 9.6 78 616-702 17-106 (126)
231 4h7y_A Dual specificity protei 96.7 0.02 7E-07 48.5 11.4 108 471-587 10-123 (161)
232 1nzn_A CGI-135 protein, fissio 96.4 0.11 3.8E-06 43.0 14.0 98 533-649 17-115 (126)
233 3mkq_A Coatomer beta'-subunit; 96.0 0.15 5.2E-06 58.3 18.1 98 274-418 608-707 (814)
234 4b4t_R RPN7, 26S proteasome re 95.7 0.021 7.3E-07 59.7 8.4 109 472-587 129-237 (429)
235 4b4t_S RPN3, 26S proteasome re 95.7 0.087 3E-06 55.1 12.7 144 359-505 145-301 (523)
236 4b4t_R RPN7, 26S proteasome re 95.7 0.045 1.5E-06 57.2 10.8 111 428-546 127-237 (429)
237 3lpz_A GET4 (YOR164C homolog); 95.6 1.9 6.4E-05 42.4 28.8 229 394-655 37-295 (336)
238 3o48_A Mitochondria fission 1 95.3 0.25 8.4E-06 41.1 11.3 79 558-651 40-121 (134)
239 3mkq_A Coatomer beta'-subunit; 95.1 0.21 7.3E-06 57.0 14.9 50 273-336 660-709 (814)
240 4b4t_S RPN3, 26S proteasome re 94.7 0.29 9.9E-06 51.2 12.7 145 401-549 145-302 (523)
241 1y8m_A FIS1; mitochondria, unk 94.5 0.5 1.7E-05 39.8 11.4 80 558-652 39-121 (144)
242 2wpv_A GET4, UPF0363 protein Y 94.3 4.2 0.00014 39.7 25.0 171 394-589 35-219 (312)
243 1y8m_A FIS1; mitochondria, unk 94.2 0.16 5.5E-06 42.8 7.7 63 639-702 36-109 (144)
244 3o48_A Mitochondria fission 1 93.9 0.2 6.8E-06 41.6 7.6 61 641-702 39-110 (134)
245 4gns_B Protein CSD3, chitin bi 93.6 0.52 1.8E-05 52.2 12.8 121 363-500 261-397 (754)
246 4ady_A RPN2, 26S proteasome re 93.6 6.6 0.00023 44.5 21.5 302 265-615 376-680 (963)
247 2ff4_A Probable regulatory pro 93.6 2 6.8E-05 43.9 16.5 103 272-382 122-237 (388)
248 4gns_B Protein CSD3, chitin bi 93.5 0.35 1.2E-05 53.6 11.1 59 310-376 339-397 (754)
249 3spa_A Mtrpol, DNA-directed RN 93.1 0.94 3.2E-05 51.5 13.8 106 347-461 124-230 (1134)
250 2ff4_A Probable regulatory pro 92.9 1.2 4.1E-05 45.6 13.6 105 404-516 127-247 (388)
251 3mkq_B Coatomer subunit alpha; 92.9 1.5 5E-05 38.7 12.1 103 273-418 13-115 (177)
252 3mkq_B Coatomer subunit alpha; 92.8 0.94 3.2E-05 40.0 10.8 101 360-500 15-115 (177)
253 3kae_A CDC27, possible protein 92.8 4.4 0.00015 35.0 16.0 170 520-702 36-240 (242)
254 3spa_A Mtrpol, DNA-directed RN 92.8 0.9 3.1E-05 51.6 13.0 100 392-503 127-230 (1134)
255 4fhn_B Nucleoporin NUP120; pro 91.9 2.6 8.8E-05 50.0 16.6 166 519-699 844-1050(1139)
256 2wpv_A GET4, UPF0363 protein Y 91.7 10 0.00036 36.9 21.3 170 435-630 36-218 (312)
257 4ady_A RPN2, 26S proteasome re 91.4 23 0.00077 40.2 38.9 167 513-697 409-587 (963)
258 3kae_A CDC27, possible protein 91.4 3.5 0.00012 35.6 12.0 98 395-503 36-143 (242)
259 3lpz_A GET4 (YOR164C homolog); 90.9 13 0.00044 36.5 28.1 229 351-613 36-295 (336)
260 4fhn_B Nucleoporin NUP120; pro 89.7 8.5 0.00029 45.6 18.2 102 394-499 844-963 (1139)
261 1ya0_A SMG-7 transcript varian 89.4 3.3 0.00011 43.6 12.8 81 559-655 153-233 (497)
262 1ya0_A SMG-7 transcript varian 89.2 0.97 3.3E-05 47.6 8.6 63 433-503 153-215 (497)
263 4b4t_O 26S proteasome regulato 87.6 20 0.00068 36.4 17.1 131 370-505 59-200 (393)
264 3re2_A Predicted protein; meni 87.2 7.8 0.00027 37.7 12.3 78 427-507 250-329 (472)
265 4b4t_O 26S proteasome regulato 86.9 28 0.00097 35.3 18.0 110 272-381 83-200 (393)
266 1zbp_A Hypothetical protein VP 86.8 16 0.00056 34.4 14.3 119 567-702 6-132 (273)
267 3uzd_A 14-3-3 protein gamma; s 85.1 24 0.00083 32.8 15.5 183 352-548 6-205 (248)
268 3u84_A Menin; MLL, JUND, ledgf 84.9 11 0.00037 37.5 12.3 75 430-508 275-352 (550)
269 4gq4_A Menin; tumor suppressor 82.6 18 0.00061 36.1 12.8 83 428-513 258-342 (489)
270 1o9d_A 14-3-3-like protein C; 81.5 35 0.0012 32.0 17.5 182 351-546 9-207 (260)
271 2br9_A 14-3-3E, 14-3-3 protein 81.3 34 0.0012 31.6 16.9 58 490-548 146-204 (234)
272 2qx5_A Nucleoporin NIC96; mRNA 80.7 40 0.0014 36.7 16.4 84 611-695 467-563 (661)
273 1zbp_A Hypothetical protein VP 78.0 15 0.0005 34.7 10.3 101 441-550 6-133 (273)
274 3ubw_A 14-3-3E, 14-3-3 protein 76.2 51 0.0017 30.8 17.0 57 490-547 172-229 (261)
275 4a5x_A MITD1, MIT domain-conta 74.0 17 0.00059 27.5 8.0 47 221-268 16-62 (86)
276 2npm_A 14-3-3 domain containin 71.5 67 0.0023 30.1 18.4 183 351-548 29-229 (260)
277 3efz_A 14-3-3 protein; 14-3-3, 70.2 39 0.0013 31.7 11.0 74 306-379 140-226 (268)
278 2wvi_A Mitotic checkpoint seri 69.9 17 0.00058 31.5 8.0 83 494-587 43-125 (164)
279 2crb_A Nuclear receptor bindin 69.3 35 0.0012 25.9 8.6 41 220-261 14-54 (97)
280 2crb_A Nuclear receptor bindin 69.1 22 0.00076 27.0 7.2 40 597-636 12-51 (97)
281 3t5v_B Nuclear mRNA export pro 69.0 46 0.0016 34.4 12.4 153 532-686 141-312 (455)
282 3re2_A Predicted protein; meni 68.7 92 0.0031 30.5 13.9 70 560-632 257-328 (472)
283 2br9_A 14-3-3E, 14-3-3 protein 68.2 75 0.0026 29.3 18.6 56 449-504 147-203 (234)
284 3ubw_A 14-3-3E, 14-3-3 protein 67.6 81 0.0028 29.5 20.1 56 449-504 173-229 (261)
285 1o9d_A 14-3-3-like protein C; 66.2 87 0.003 29.3 19.2 55 449-503 152-207 (260)
286 3uzd_A 14-3-3 protein gamma; s 65.3 88 0.003 29.0 21.0 56 449-504 148-204 (248)
287 3u84_A Menin; MLL, JUND, ledgf 64.4 1.2E+02 0.0041 30.3 13.9 54 576-632 297-350 (550)
288 4aez_C MAD3, mitotic spindle c 64.3 65 0.0022 29.4 10.9 84 493-587 96-179 (223)
289 4a1g_A Mitotic checkpoint seri 64.2 17 0.00057 31.0 6.7 84 493-587 47-130 (152)
290 1wfd_A Hypothetical protein 15 63.9 35 0.0012 26.2 8.0 48 220-268 14-61 (93)
291 1qsa_A Protein (soluble lytic 63.8 1.6E+02 0.0056 31.7 21.1 121 564-698 220-347 (618)
292 4gq4_A Menin; tumor suppressor 63.3 1.3E+02 0.0043 30.2 15.4 54 576-632 282-335 (489)
293 2o8p_A 14-3-3 domain containin 62.4 94 0.0032 28.4 19.8 182 355-547 11-198 (227)
294 3esl_A Checkpoint serine/threo 62.3 88 0.003 28.0 16.5 87 495-587 58-144 (202)
295 2v6x_A Vacuolar protein sortin 61.4 32 0.0011 25.9 7.3 48 220-268 12-59 (85)
296 4a5x_A MITD1, MIT domain-conta 59.7 54 0.0018 24.7 8.5 32 603-634 19-50 (86)
297 2w2u_A Hypothetical P60 katani 59.3 24 0.00081 26.5 6.0 35 220-255 18-52 (83)
298 2v6y_A AAA family ATPase, P60 59.0 25 0.00087 26.3 6.2 36 220-256 10-45 (83)
299 2qx5_A Nucleoporin NIC96; mRNA 58.5 2.1E+02 0.0071 31.1 17.2 27 516-542 535-563 (661)
300 2rpa_A Katanin P60 ATPase-cont 58.4 24 0.00083 26.1 5.7 39 222-261 13-51 (78)
301 3t5v_B Nuclear mRNA export pro 58.3 36 0.0012 35.1 9.3 100 475-575 177-282 (455)
302 2cpt_A SKD1 protein, vacuolar 57.9 53 0.0018 26.5 8.3 27 608-634 26-52 (117)
303 2cpt_A SKD1 protein, vacuolar 57.8 41 0.0014 27.1 7.7 49 220-269 17-66 (117)
304 3iqu_A 14-3-3 protein sigma; s 54.3 1.3E+02 0.0046 27.6 20.5 56 448-503 149-205 (236)
305 4gq2_M Nucleoporin NUP120; bet 54.2 1E+02 0.0036 35.4 13.3 68 519-587 842-926 (950)
306 2w2u_A Hypothetical P60 katani 53.4 61 0.0021 24.2 7.5 29 606-634 25-53 (83)
307 4aez_C MAD3, mitotic spindle c 52.4 1.4E+02 0.0047 27.2 11.1 85 284-380 96-180 (223)
308 3r9m_A BRO1 domain-containing 52.2 1.2E+02 0.004 30.4 11.8 32 600-631 253-284 (376)
309 2v6y_A AAA family ATPase, P60 51.8 69 0.0024 23.9 7.6 28 607-634 18-45 (83)
310 3efz_A 14-3-3 protein; 14-3-3, 51.1 1.3E+02 0.0044 28.3 10.7 95 242-337 118-226 (268)
311 1wfd_A Hypothetical protein 15 50.4 76 0.0026 24.3 7.8 29 606-634 21-49 (93)
312 2wvi_A Mitotic checkpoint seri 50.0 69 0.0024 27.6 8.2 83 242-337 43-125 (164)
313 4a1g_A Mitotic checkpoint seri 49.8 64 0.0022 27.4 7.9 85 240-337 46-130 (152)
314 2v6x_A Vacuolar protein sortin 49.1 81 0.0028 23.6 7.8 28 607-634 20-47 (85)
315 1qsa_A Protein (soluble lytic 47.1 3E+02 0.01 29.6 27.8 288 217-540 98-436 (618)
316 3esl_A Checkpoint serine/threo 46.3 1.6E+02 0.0055 26.3 16.4 86 453-546 58-144 (202)
317 4gq2_M Nucleoporin NUP120; bet 45.8 83 0.0028 36.2 10.7 97 219-320 838-948 (950)
318 2ijq_A Hypothetical protein; s 45.6 37 0.0013 29.2 5.8 73 354-426 36-109 (161)
319 2r17_C Vacuolar protein sortin 45.2 2.1E+02 0.0073 27.3 24.0 159 304-465 95-271 (298)
320 3rau_A Tyrosine-protein phosph 44.6 2.5E+02 0.0084 27.9 12.8 34 307-340 116-158 (363)
321 2rpa_A Katanin P60 ATPase-cont 42.1 34 0.0012 25.3 4.3 33 475-507 13-45 (78)
322 2wb7_A PT26-6P; extra chromoso 41.7 1.2E+02 0.004 31.2 9.5 41 617-657 449-489 (526)
323 2ijq_A Hypothetical protein; s 41.4 52 0.0018 28.3 6.1 72 562-633 36-108 (161)
324 1zb1_A BRO1 protein; AIP1, BRO 38.6 2.7E+02 0.0092 27.9 12.1 36 599-634 256-291 (392)
325 2vkj_A TM1634; membrane protei 38.2 1.3E+02 0.0043 22.7 7.7 47 601-653 54-101 (106)
326 2kzq_A Envelope glycoprotein E 36.6 22 0.00074 21.4 2.0 17 52-68 5-21 (36)
327 2cwy_A Hypothetical protein TT 36.2 89 0.0031 24.0 6.2 66 564-633 7-72 (94)
328 3t5x_A PCI domain-containing p 35.8 70 0.0024 28.8 6.4 59 430-491 12-70 (203)
329 2o8p_A 14-3-3 domain containin 35.7 2.6E+02 0.0087 25.5 22.2 180 437-630 11-198 (227)
330 3ax2_A Mitochondrial import re 34.2 74 0.0025 23.1 5.0 31 476-506 19-49 (73)
331 3r9m_A BRO1 domain-containing 31.5 4E+02 0.014 26.5 14.0 33 307-339 113-157 (376)
332 3t5x_A PCI domain-containing p 31.3 1.4E+02 0.005 26.6 7.8 59 471-533 11-69 (203)
333 2npm_A 14-3-3 domain containin 31.3 3.3E+02 0.011 25.4 21.6 57 449-506 173-230 (260)
334 2a9u_A Ubiquitin carboxyl-term 31.0 1E+02 0.0036 25.8 6.2 42 601-644 43-84 (144)
335 2cwy_A Hypothetical protein TT 30.6 1.3E+02 0.0044 23.1 6.2 67 397-465 6-72 (94)
336 1om2_A Protein (mitochondrial 29.9 1E+02 0.0035 23.7 5.4 30 477-506 23-52 (95)
337 2r17_C Vacuolar protein sortin 29.9 3.7E+02 0.013 25.6 22.3 154 432-590 99-270 (298)
338 2vkj_A TM1634; membrane protei 29.1 1.8E+02 0.0062 21.8 8.2 48 307-360 52-100 (106)
339 1om2_A Protein (mitochondrial 27.3 62 0.0021 24.9 3.8 30 520-549 23-52 (95)
340 3ax2_A Mitochondrial import re 27.1 1.1E+02 0.0038 22.2 4.9 27 603-629 20-46 (73)
341 2wb7_A PT26-6P; extra chromoso 26.8 2.8E+02 0.0096 28.5 9.4 40 449-488 449-488 (526)
342 1wy6_A Hypothetical protein ST 26.1 1.7E+02 0.0058 24.5 6.3 55 441-503 100-154 (172)
343 2wm9_A Dedicator of cytokinesi 25.6 5E+02 0.017 26.3 11.6 35 303-337 6-40 (428)
344 2xze_A STAM-binding protein; h 24.6 1E+02 0.0035 26.0 5.1 41 601-642 41-81 (146)
345 3myv_A SUSD superfamily protei 24.6 83 0.0028 32.5 5.6 32 389-420 187-218 (454)
346 2wm9_A Dedicator of cytokinesi 23.9 3.7E+02 0.013 27.3 10.2 95 559-655 12-141 (428)
347 3kez_A Putative sugar binding 22.7 94 0.0032 32.2 5.5 32 389-420 193-224 (461)
348 1wy6_A Hypothetical protein ST 22.6 2.5E+02 0.0085 23.5 6.6 53 403-461 102-154 (172)
349 3myv_A SUSD superfamily protei 21.6 1E+02 0.0036 31.7 5.6 33 597-629 187-219 (454)
350 4fm3_A Uncharacterized hypothe 21.6 2.8E+02 0.0097 21.4 8.0 60 561-636 37-96 (98)
351 2yin_A DOCK2, dedicator of cyt 21.3 6.5E+02 0.022 25.5 12.0 118 409-529 12-145 (436)
352 3kez_A Putative sugar binding 20.4 1.2E+02 0.004 31.4 5.7 33 597-629 193-225 (461)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=3e-35 Score=311.87 Aligned_cols=378 Identities=19% Similarity=0.203 Sum_probs=332.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchH
Q 005139 226 KQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHAL 305 (712)
Q Consensus 226 ~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 305 (712)
.+|..++..|+ +++|+..+.++++.. |....++..+|.++...|++++|+.++++++... +..+
T Consensus 4 ~~a~~~~~~g~-~~~A~~~~~~~~~~~---------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-----p~~~- 67 (388)
T 1w3b_A 4 ELAHREYQAGD-FEAAERHCMQLWRQE---------PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-----PLLA- 67 (388)
T ss_dssp THHHHHHHHTC-HHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH-
T ss_pred hHHHHHHHCCC-HHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCch-
Confidence 46888999997 999999999988763 4446678889999999999999999999999875 4333
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Q 005139 306 AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385 (712)
Q Consensus 306 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 385 (712)
.++..+|.++...|++++|+..|++++.+ +|....++..+|.++...|++++|+..|++++.+.+..
T Consensus 68 ---~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-- 134 (388)
T 1w3b_A 68 ---EAYSNLGNVYKERGQLQEAIEHYRHALRL--------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL-- 134 (388)
T ss_dssp ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTC--
T ss_pred ---HHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--
Confidence 35999999999999999999999999998 67888899999999999999999999999999886543
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 005139 386 PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465 (712)
Q Consensus 386 ~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 465 (712)
..++..+|.++...|++++|+.+|.+++.. .|....++..+|.++...|++++|+.+|++++.+
T Consensus 135 ------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---- 198 (388)
T 1w3b_A 135 ------YCVRSDLGNLLKALGRLEEAKACYLKAIET------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL---- 198 (388)
T ss_dssp ------THHHHHHHHHHHTTSCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----
T ss_pred ------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----
Confidence 236889999999999999999999999853 4566788999999999999999999999999998
Q ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 005139 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALK 545 (712)
Q Consensus 466 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 545 (712)
.|....++..+|.++...|++++|+..|++++.+ .|....++..+|.++...|++++|+..|++++.
T Consensus 199 ----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 265 (388)
T 1w3b_A 199 ----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL---------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265 (388)
T ss_dssp ----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7888899999999999999999999999999998 344577899999999999999999999999998
Q ss_pred HHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 005139 546 IYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEE 625 (712)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 625 (712)
+.+.. ..++..+|.++...|++++|+.+|++++.+. +....++..+|.++...|++++|+.+|++
T Consensus 266 ~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 330 (388)
T 1w3b_A 266 LQPHF-------PDAYCNLANALKEKGSVAEAEDCYNTALRLC--------PTHADSLNNLANIKREQGNIEEAVRLYRK 330 (388)
T ss_dssp TCSSC-------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------cccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 64433 4578899999999999999999999999862 22347889999999999999999999999
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCCCChhHHHHHHHHHHHHHHhcc
Q 005139 626 ARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGTANPDVDDEKRRLAELLKEAGR 684 (712)
Q Consensus 626 al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~~~p~~~~~~~~la~~~~~~g~ 684 (712)
++++ +|+...++.++|.+|...|+ .+.....+|+...++..+|.++..+|+
T Consensus 331 al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 331 ALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTS--------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9987 88888999999999999998 444456789999999999999988774
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=5e-36 Score=317.81 Aligned_cols=383 Identities=17% Similarity=0.213 Sum_probs=340.4
Q ss_pred CCcccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 005139 194 ATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAA 273 (712)
Q Consensus 194 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~ 273 (712)
+......|++.+|++.+..+...+|+...++..++..++..|+ +++|+.++++++... |..+.++..+|.
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~~a~~~~~~a~~~~---------p~~~~~~~~lg~ 75 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRR-LDRSAHFSTLAIKQN---------PLLAEAYSNLGN 75 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC---------TTCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcC---------CCchHHHHHHHH
Confidence 3345678889989877888888899999999999999999997 999999999998753 445778999999
Q ss_pred HHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHH
Q 005139 274 IYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETC 353 (712)
Q Consensus 274 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 353 (712)
+|...|++++|+..|++++.+. |+.. .++..+|.++...|++++|+..|++++.+ +|....++
T Consensus 76 ~~~~~g~~~~A~~~~~~al~~~-----p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~ 138 (388)
T 1w3b_A 76 VYKERGQLQEAIEHYRHALRLK-----PDFI----DGYINLAAALVAAGDMEGAVQAYVSALQY--------NPDLYCVR 138 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHHHHHSCSSHHHHHHHHHHHH--------CTTCTHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcC-----cchH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHH
Confidence 9999999999999999999875 4443 35899999999999999999999999988 67788899
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHH
Q 005139 354 RYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVAS 433 (712)
Q Consensus 354 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 433 (712)
..+|.++...|++++|+.+|++++...+.. ..++..+|.++...|++++|+.+|++++.. .|....
T Consensus 139 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 204 (388)
T 1w3b_A 139 SDLGNLLKALGRLEEAKACYLKAIETQPNF--------AVAWSNLGCVFNAQGEIWLAIHHFEKAVTL------DPNFLD 204 (388)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------CTTCHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCcHH
Confidence 999999999999999999999999875432 457899999999999999999999999853 455678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCC
Q 005139 434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP 513 (712)
Q Consensus 434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 513 (712)
++..+|.++...|++++|+..|++++.+ .|....++..+|.++...|++++|+.+|++++++ .
T Consensus 205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---------~ 267 (388)
T 1w3b_A 205 AYINLGNVLKEARIFDRAVAAYLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL---------Q 267 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---------C
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------C
Confidence 8999999999999999999999999998 7878889999999999999999999999999987 3
Q ss_pred hhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 005139 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE 593 (712)
Q Consensus 514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 593 (712)
|....++..+|.++...|++++|+.+|++++.+.+.. ..++..+|.++...|++++|+.+|++++++
T Consensus 268 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------ 334 (388)
T 1w3b_A 268 PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH-------ADSLNNLANIKREQGNIEEAVRLYRKALEV------ 334 (388)
T ss_dssp SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHTTTCHHHHHHHHHHHTTS------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------
Confidence 3446779999999999999999999999999985543 467889999999999999999999999874
Q ss_pred CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005139 594 RKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657 (712)
Q Consensus 594 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~ 657 (712)
.+....++..+|.++...|++++|+.+|++++++ +|+...++.++|.++..+|+
T Consensus 335 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 335 --FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp --CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHTCC
T ss_pred --CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHhHHHHHHHccC
Confidence 2334578999999999999999999999999998 89999999999999998874
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-32 Score=309.87 Aligned_cols=443 Identities=12% Similarity=0.075 Sum_probs=355.2
Q ss_pred ccccCCCcccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 005139 189 KSNAGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCL 268 (712)
Q Consensus 189 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 268 (712)
.+...+..+...|++.+|+..+.......|+. ..++.++..+...|+ +++|+..|++++.. +....++
T Consensus 86 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~----------~~~~~~~ 153 (597)
T 2xpi_A 86 YLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGD-YARAKCLLTKEDLY----------NRSSACR 153 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTC-HHHHHHHHHHTCGG----------GTCHHHH
T ss_pred HHHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCc-HHHHHHHHHHHhcc----------ccchhHH
Confidence 34455566777888888886666655555654 566889999999997 99999999987642 2225578
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHhhchhhhh--------hcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 005139 269 HVIAAIYCSLGQYNEAIPVLEQSIEIPVIE--------EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ 340 (712)
Q Consensus 269 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 340 (712)
..++.+|...|++++|+.+|++........ ..... .....+++.+|.+|...|++++|+.+|+++++.
T Consensus 154 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 229 (597)
T 2xpi_A 154 YLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGI-KLEASMCYLRGQVYTNLSNFDRAKECYKEALMV--- 229 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhhHHHHHHHHhccCCcccccccccccccccccc-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 889999999999999999998643221000 00000 113557999999999999999999999999987
Q ss_pred HhCCCChhHHHHHHHH--------------------------------------HHHHHHhCCHHHHHHHHHHHHHHHHh
Q 005139 341 VLGETDPRVGETCRYL--------------------------------------AEAHVQALQFSEAQKFCQMALDIHKD 382 (712)
Q Consensus 341 ~~~~~~~~~~~~~~~l--------------------------------------a~~~~~~g~~~~A~~~~~~al~~~~~ 382 (712)
+|....++..+ +..|...|++++|+.+|++++.. +.
T Consensus 230 -----~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~ 303 (597)
T 2xpi_A 230 -----DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EK 303 (597)
T ss_dssp -----CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GG
T ss_pred -----CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-Cc
Confidence 34333333333 44555778899999999888765 11
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139 383 NGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAF 462 (712)
Q Consensus 383 ~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 462 (712)
...++..++.+|...|++++|+.+|++++.. .+....++..++.++...|++++|+..+++++..
T Consensus 304 --------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 368 (597)
T 2xpi_A 304 --------SSDLLLCKADTLFVRSRFIDVLAITTKILEI------DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR- 368 (597)
T ss_dssp --------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred --------hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-
Confidence 1457899999999999999999999998743 2333456788999999999999999999999977
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 005139 463 KTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQK 542 (712)
Q Consensus 463 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 542 (712)
.|....++..+|.+|...|++++|+.+|++++++ .+....++..++.+|...|++++|+.+|++
T Consensus 369 -------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 369 -------HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM---------DPQFGPAWIGFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp -------CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred -------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6777889999999999999999999999999997 334567899999999999999999999999
Q ss_pred HHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHH
Q 005139 543 ALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVEL 622 (712)
Q Consensus 543 al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 622 (712)
++...+.. ..++..+|.+|...|++++|+.+|++++.+. +. ...++..+|.+|...|++++|+.+
T Consensus 433 ~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~---~~~~~~~l~~~~~~~g~~~~A~~~ 497 (597)
T 2xpi_A 433 AARLFQGT-------HLPYLFLGMQHMQLGNILLANEYLQSSYALF-----QY---DPLLLNELGVVAFNKSDMQTAINH 497 (597)
T ss_dssp HHHTTTTC-------SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----CC---CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhCccc-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC---ChHHHHHHHHHHHHhCCHHHHHHH
Confidence 99875433 2578899999999999999999999998751 11 236899999999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhh-HHHHHHHHHHHHHccc-------hhhhCCCChhHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 005139 623 FEEARSILEQECGPYHPDT-LGVYSNLAGTYDAIGR-------EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLE 694 (712)
Q Consensus 623 ~~~al~~~~~~~~~~~p~~-~~~~~~La~~~~~~g~-------~~~l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~ 694 (712)
|++++++.... +.+|+. ..++..++.+|...|+ .+.+....|++..++..++.+|...|++++|. +.|+
T Consensus 498 ~~~~~~~~~~~--~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~ 574 (597)
T 2xpi_A 498 FQNALLLVKKT--QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAI-THLH 574 (597)
T ss_dssp HHHHHHHHHHS--CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHH-HHHH
T ss_pred HHHHHHhhhcc--ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHH-HHHH
Confidence 99999986543 225554 7899999999999999 33333456888899999999999999999999 9999
Q ss_pred HHHHhccc
Q 005139 695 TLLDANSR 702 (712)
Q Consensus 695 ~~l~~~p~ 702 (712)
++++.+|+
T Consensus 575 ~~l~~~p~ 582 (597)
T 2xpi_A 575 ESLAISPN 582 (597)
T ss_dssp HHHHHCTT
T ss_pred HHHhcCCC
Confidence 99999997
No 4
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-30 Score=284.42 Aligned_cols=378 Identities=11% Similarity=0.062 Sum_probs=311.7
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhh
Q 005139 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298 (712)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 298 (712)
..+..++.+|..++..|+ |++|+.+|++++... ++ ..++..+|.++...|++++|+..|++++++.
T Consensus 4 ~~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~-------p~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 69 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKK-YDDAIKYYNWALELK-------ED---PVFYSNLSACYVSVGDLKKVVEMSTKALELK--- 69 (514)
T ss_dssp HHHHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---
T ss_pred hhHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhcC-------cc---HHHHHhHHHHHHHHhhHHHHHHHHHHHhccC---
Confidence 356789999999999997 999999999999863 22 6688999999999999999999999999875
Q ss_pred hcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-----------------------h-------------
Q 005139 299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV-----------------------L------------- 342 (712)
Q Consensus 299 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----------------------~------------- 342 (712)
|..+ .++..+|.+|...|++++|+..|++++...... +
T Consensus 70 --p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 143 (514)
T 2gw1_A 70 --PDYS----KVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTEL 143 (514)
T ss_dssp --SCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC--------------
T ss_pred --hHHH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 4443 358999999999999999999999987652100 0
Q ss_pred -----------C------------------------CCChhHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHhcC
Q 005139 343 -----------G------------------------ETDPRVGETCRYLAEAHVQ---ALQFSEAQKFCQMALDIHKDNG 384 (712)
Q Consensus 343 -----------~------------------------~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~ 384 (712)
. -..|....++..+|.+++. .|++++|+.+|++++...+...
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 223 (514)
T 2gw1_A 144 STQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQL 223 (514)
T ss_dssp -------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHT
T ss_pred cCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhh
Confidence 0 0002336777888888886 8999999999999999543322
Q ss_pred --CCCC----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005139 385 --SPAS----LEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA 458 (712)
Q Consensus 385 --~~~~----~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 458 (712)
.+.. +....++..+|.++...|++++|+.+|++++.. .+. ..++..+|.++...|++++|+.+++++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~ 296 (514)
T 2gw1_A 224 DKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL------FPR-VNSYIYMALIMADRNDSTEYYNYFDKA 296 (514)
T ss_dssp TTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH------CCC-HHHHHHHHHHHHTSSCCTTGGGHHHHH
T ss_pred ccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh------Ccc-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2222 556778999999999999999999999999853 233 788999999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHH
Q 005139 459 LTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIK 538 (712)
Q Consensus 459 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 538 (712)
+.. .|....++..+|.++...|++++|+.+|++++.+.. ....++..+|.++...|++++|+.
T Consensus 297 ~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~A~~ 359 (514)
T 2gw1_A 297 LKL--------DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP---------ENIFPYIQLACLAYRENKFDDCET 359 (514)
T ss_dssp HTT--------CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS---------SCSHHHHHHHHHTTTTTCHHHHHH
T ss_pred hhc--------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh---------hhHHHHHHHHHHHHHcCCHHHHHH
Confidence 987 666678999999999999999999999999998732 235678999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH---hCC
Q 005139 539 LLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ---RYS 615 (712)
Q Consensus 539 ~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~---~g~ 615 (712)
++++++...+.. ..++..+|.++...|++++|+.+|++++.+........ ....++..+|.++.. .|+
T Consensus 360 ~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~ 430 (514)
T 2gw1_A 360 LFSEAKRKFPEA-------PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY--VGIAPLVGKATLLTRNPTVEN 430 (514)
T ss_dssp HHHHHHHHSTTC-------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS--SCSHHHHHHHHHHHTSCCTTH
T ss_pred HHHHHHHHcccC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH--HHHHHHHHHHHHHhhhhhcCC
Confidence 999999876543 25788999999999999999999999998765432211 112488999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005139 616 INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657 (712)
Q Consensus 616 ~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~ 657 (712)
+++|+.+|++++.+ +|+...++..+|.+|...|+
T Consensus 431 ~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~ 464 (514)
T 2gw1_A 431 FIEATNLLEKASKL--------DPRSEQAKIGLAQMKLQQED 464 (514)
T ss_dssp HHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcC
Confidence 99999999999998 77766777777777776666
No 5
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.98 E-value=5e-30 Score=283.87 Aligned_cols=377 Identities=12% Similarity=0.103 Sum_probs=297.8
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhh
Q 005139 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298 (712)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 298 (712)
..+..++.+|..++..|+ +++|+.+|++++... |..+.++..+|.+|..+|++++|+..|++++.+.
T Consensus 23 ~~a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 89 (537)
T 3fp2_A 23 AYAVQLKNRGNHFFTAKN-FNEAIKYYQYAIELD---------PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--- 89 (537)
T ss_dssp HHHHHHHHHHHHHHHTTC-CC-CHHHHHHHHHHC---------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhhC---------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---
Confidence 457889999999999997 999999999999864 4447889999999999999999999999999885
Q ss_pred hcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH------------------------HHHhCC----------
Q 005139 299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQ------------------------KQVLGE---------- 344 (712)
Q Consensus 299 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------------------~~~~~~---------- 344 (712)
+.++ .++..+|.++...|++++|+..|+ ++.+. ...+..
T Consensus 90 --p~~~----~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~ 162 (537)
T 3fp2_A 90 --PDHS----KALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLP 162 (537)
T ss_dssp --TTCH----HHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCC
T ss_pred --CchH----HHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccc
Confidence 4443 358999999999999999999995 44321 111110
Q ss_pred --------------------------CChhHHHHHHHHH--------HHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHH
Q 005139 345 --------------------------TDPRVGETCRYLA--------EAHVQALQFSEAQKFCQMALDIHKDNGSPASLE 390 (712)
Q Consensus 345 --------------------------~~~~~~~~~~~la--------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 390 (712)
..+........++ ......|++++|+.++++++...+.... ....
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~-~~~~ 241 (537)
T 3fp2_A 163 SNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDP-LREN 241 (537)
T ss_dssp CHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHH-HHHH
T ss_pred hHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcch-hhHH
Confidence 0000011222222 2233345778888888888766543211 1123
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 005139 391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH 470 (712)
Q Consensus 391 ~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 470 (712)
.+.++..+|.++...|++++|+.+|++++.. .|. ..++..+|.++...|++++|+.+|++++.. .
T Consensus 242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~ 306 (537)
T 3fp2_A 242 AALALCYTGIFHFLKNNLLDAQVLLQESINL------HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDL--------N 306 (537)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc------CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhcc--------C
Confidence 3667899999999999999999999999853 333 678999999999999999999999999998 7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139 471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (712)
Q Consensus 471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (712)
|....++..+|.++...|++++|+.+|++++.+. |....++..+|.++...|++++|+.++++++...+..
T Consensus 307 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 377 (537)
T 3fp2_A 307 PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN---------PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL 377 (537)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 7778899999999999999999999999999983 3335679999999999999999999999999986544
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHh----------CCHHHHH
Q 005139 551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR----------YSINEAV 620 (712)
Q Consensus 551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~----------g~~~~A~ 620 (712)
..++..+|.++...|++++|+.+|++++.+.......... ...+..+|.++... |++++|+
T Consensus 378 -------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~ 448 (537)
T 3fp2_A 378 -------PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG--IGPLIGKATILARQSSQDPTQLDEEKFNAAI 448 (537)
T ss_dssp -------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST--THHHHHHHHHHHHHHTC----CCHHHHHHHH
T ss_pred -------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH--HHHHHHHHHHHHHHhhccchhhhHhHHHHHH
Confidence 2578899999999999999999999999987665433222 24567788999999 9999999
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005139 621 ELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657 (712)
Q Consensus 621 ~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~ 657 (712)
.+|++++.+ +|+...++..+|.+|..+|+
T Consensus 449 ~~~~~a~~~--------~p~~~~~~~~l~~~~~~~g~ 477 (537)
T 3fp2_A 449 KLLTKACEL--------DPRSEQAKIGLAQLKLQMEK 477 (537)
T ss_dssp HHHHHHHHH--------CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHh--------CCCCHHHHHHHHHHHHHhcc
Confidence 999999998 77777777777777777776
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.98 E-value=1.4e-30 Score=292.40 Aligned_cols=392 Identities=13% Similarity=0.064 Sum_probs=324.7
Q ss_pred cccCCCcccccccccccCccccccCCCC----------------CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 005139 190 SNAGATPMKKRKGKLHKGQDVSEAGLDK----------------PGLGPLLLKQARELISSGDNPQKALELALRAAKSFE 253 (712)
Q Consensus 190 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~----------------p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~ 253 (712)
....+..+...|++.+|+..+.+..+.. +.....+..+|..+...|+ +++|+.+|+++++..
T Consensus 153 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~- 230 (597)
T 2xpi_A 153 RYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN-FDRAKECYKEALMVD- 230 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC-
Confidence 3455666778888888886666544444 4568899999999999997 999999999998753
Q ss_pred HhcCCCCCHHHHH-----------------------------------HHHHHHHHHHHcCCHhHHHHHHHHhhchhhhh
Q 005139 254 IGANGKPSLELVM-----------------------------------CLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIE 298 (712)
Q Consensus 254 ~~~~~~~~~~~~~-----------------------------------~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 298 (712)
+..+.... .+..++..|...|++++|+.+|++++..
T Consensus 231 -----p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---- 301 (597)
T 2xpi_A 231 -----AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL---- 301 (597)
T ss_dssp -----TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG----
T ss_pred -----chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC----
Confidence 11111111 1122255566789999999999998876
Q ss_pred hcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005139 299 EGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALD 378 (712)
Q Consensus 299 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 378 (712)
+. ...++..+|.+|...|++++|+.+|++++.. .|....++..++.++...|++++|+.++++++.
T Consensus 302 --~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 367 (597)
T 2xpi_A 302 --EK----SSDLLLCKADTLFVRSRFIDVLAITTKILEI--------DPYNLDVYPLHLASLHESGEKNKLYLISNDLVD 367 (597)
T ss_dssp --GG----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --Cc----hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 12 2345899999999999999999999999987 455667889999999999999999999999986
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005139 379 IHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKA 458 (712)
Q Consensus 379 ~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 458 (712)
..+.. ..++..+|.+|...|++++|+.+|++++.. .+....++..+|.+|...|++++|+.+|+++
T Consensus 368 ~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 433 (597)
T 2xpi_A 368 RHPEK--------AVTWLAVGIYYLCVNKISEARRYFSKSSTM------DPQFGPAWIGFAHSFAIEGEHDQAISAYTTA 433 (597)
T ss_dssp HCTTS--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hCccc--------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 54322 447888999999999999999999999853 3445678899999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHH
Q 005139 459 LTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIK 538 (712)
Q Consensus 459 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 538 (712)
+.. .|....++..+|.+|...|++++|+.+|++++.+. +....++..+|.+|...|++++|+.
T Consensus 434 ~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~ 496 (597)
T 2xpi_A 434 ARL--------FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF---------QYDPLLLNELGVVAFNKSDMQTAIN 496 (597)
T ss_dssp HHT--------TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHh--------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCChHHHHHHHHHHHHhCCHHHHHH
Confidence 987 56667889999999999999999999999999883 2235679999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHH
Q 005139 539 LLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINE 618 (712)
Q Consensus 539 ~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 618 (712)
+|++++.+.+.....+.....++..+|.+|...|++++|+.+|++++++. +....++..+|.+|...|++++
T Consensus 497 ~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~g~~~~ 568 (597)
T 2xpi_A 497 HFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS--------TNDANVHTAIALVYLHKKIPGL 568 (597)
T ss_dssp HHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHhCCHHH
Confidence 99999999887633333346789999999999999999999999999862 1234789999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Q 005139 619 AVELFEEARSILEQECGPYHPDTLGVYSNLAGTYD 653 (712)
Q Consensus 619 A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~ 653 (712)
|+.+|++++++ +|+...++..|+.+|.
T Consensus 569 A~~~~~~~l~~--------~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 569 AITHLHESLAI--------SPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHH--------CTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhc--------CCCChHHHHHHHHHHh
Confidence 99999999999 9999999999998874
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.9e-30 Score=285.37 Aligned_cols=403 Identities=15% Similarity=0.102 Sum_probs=332.7
Q ss_pred cccCCCcccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 005139 190 SNAGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLH 269 (712)
Q Consensus 190 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~ 269 (712)
+...+..+...|+|.+|+..+..+...+| ...++..+|.+++..|+ +++|+..+++++++. |....++.
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~---------p~~~~~~~ 77 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGD-LKKVVEMSTKALELK---------PDYSKVLL 77 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHC---------SCCHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhh-HHHHHHHHHHHhccC---------hHHHHHHH
Confidence 34455667788899999977777777777 48899999999999997 999999999999863 34467899
Q ss_pred HHHHHHHHcCCHhHHHHHHHHhhchhhhhhcc-----------------------------------------------c
Q 005139 270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQ-----------------------------------------------E 302 (712)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------------------------------------------~ 302 (712)
.+|.+|..+|++++|+..|++++...+..... .
T Consensus 78 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (514)
T 2gw1_A 78 RRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQEN 157 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------C
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccC
Confidence 99999999999999999999998765310000 0
Q ss_pred ch-----------------------HHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHh--CCCC----hhHH
Q 005139 303 HA-----------------------LAKFAGHMQLGDTYAM---LGQLENSLMCYTTGLEVQKQVL--GETD----PRVG 350 (712)
Q Consensus 303 ~~-----------------------~~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~~~~~--~~~~----~~~~ 350 (712)
.+ ......+..+|.++.. .|++++|+.+|++++...+... .+++ |...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (514)
T 2gw1_A 158 LPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLA 237 (514)
T ss_dssp CCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHH
T ss_pred CchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHH
Confidence 00 0014457778888776 8999999999999999654443 2222 6778
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChh
Q 005139 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE 430 (712)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 430 (712)
.++..+|.++...|++++|+.++++++...+. ..++..+|.++...|++++|+.+|++++. ..+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~ 302 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR---------VNSYIYMALIMADRNDSTEYYNYFDKALK------LDSN 302 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHTSSCCTTGGGHHHHHHT------TCTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc---------HHHHHHHHHHHHHCCCHHHHHHHHHHHhh------cCcC
Confidence 89999999999999999999999999987532 45789999999999999999999999983 4455
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 005139 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG 510 (712)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 510 (712)
...++..+|.++...|++++|+.+|++++.+ .|....++..+|.++...|++++|+.+|++++...
T Consensus 303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------ 368 (514)
T 2gw1_A 303 NSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--------DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF------ 368 (514)
T ss_dssp CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT--------CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS------
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc------
Confidence 5678999999999999999999999999987 56667799999999999999999999999999983
Q ss_pred CCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHH
Q 005139 511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM---LGNYSDSYDSFKNAISK 587 (712)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~ 587 (712)
+....++..+|.++...|++++|+.+|++++...+... .......++..+|.++.. .|++++|+.+|++++.+
T Consensus 369 ---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~ 444 (514)
T 2gw1_A 369 ---PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD-GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444 (514)
T ss_dssp ---TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS-SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred ---ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh
Confidence 23356789999999999999999999999999988763 222223478899999999 99999999999999986
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 005139 588 LRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTY 652 (712)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~ 652 (712)
. +....++..+|.++...|++++|+.+|++++++ +|+...++..+....
T Consensus 445 ~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~~~~~~ 493 (514)
T 2gw1_A 445 D--------PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--------ARTMEEKLQAITFAE 493 (514)
T ss_dssp C--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSHHHHHHHHHHHH
T ss_pred C--------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------ccccHHHHHHHHHHH
Confidence 2 223478899999999999999999999999999 888777776665443
No 8
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=5.2e-30 Score=279.01 Aligned_cols=407 Identities=14% Similarity=0.057 Sum_probs=291.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHH
Q 005139 238 PQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDT 317 (712)
Q Consensus 238 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~ 317 (712)
.+.++..+++.+..... ..++...+.+|..||.++..+|++++|+++|++|+++.+...+.......+.++.++|.+
T Consensus 27 ~~~~l~~~e~~~~~~~~---~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~ 103 (472)
T 4g1t_A 27 GENSLDDFEDKVFYRTE---FQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWV 103 (472)
T ss_dssp TCCCHHHHHHHHHHHTT---SCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---hCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHH
Confidence 45566666665544322 223344577889999999999999999999999999876544333222245578999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 005139 318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL--QFSEAQKFCQMALDIHKDNGSPASLEEAADR 395 (712)
Q Consensus 318 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~ 395 (712)
|..+|++++|+.+|++++.+.+...+..++..+.++..+|.++...| +|++|+.+|++++.+.|.. + .++
T Consensus 104 y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~-----~---~~~ 175 (472)
T 4g1t_A 104 YYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN-----P---EFT 175 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC-----H---HHH
T ss_pred HHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC-----H---HHH
Confidence 99999999999999999999988776666777888888888777654 7999999999999987543 2 245
Q ss_pred HHHHHHH---HHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHhcCC
Q 005139 396 RLMGLIC---ETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYL----SLSRYDEAGFAYQKALTAFKTNKGE 468 (712)
Q Consensus 396 ~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~ 468 (712)
..++.++ ...+++++|++.|++++.+ .|....++..+|..+. ..|++++|+.++++++.+
T Consensus 176 ~~~~~~~~~l~~~~~~~~al~~~~~al~l------~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~------- 242 (472)
T 4g1t_A 176 SGLAIASYRLDNWPPSQNAIDPLRQAIRL------NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK------- 242 (472)
T ss_dssp HHHHHHHHHHHHSCCCCCTHHHHHHHHHH------CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhhc------CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-------
Confidence 5666554 4568889999999999854 3444455666665554 457788999999999998
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHc------------------
Q 005139 469 NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM------------------ 530 (712)
Q Consensus 469 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~------------------ 530 (712)
.|....++..+|.+|...|++++|+.+|++++++ .|..+.++..+|.+|...
T Consensus 243 -~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~ 312 (472)
T 4g1t_A 243 -APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY---------IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKL 312 (472)
T ss_dssp -CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------STTCHHHHHHHHHHHHHHHHHHHHC------CHHHH
T ss_pred -CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh---------CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 7888889999999999999999999999999998 455677889999888654
Q ss_pred -ccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 005139 531 -NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLA 609 (712)
Q Consensus 531 -g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~ 609 (712)
+.+++|+..+++++.+.+... .++..+|.+|...|++++|+.+|++++.+ ...+.....++..+|.+
T Consensus 313 ~~~~~~A~~~~~~a~~~~~~~~-------~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-----~~~~~~~~~~~~~~~~~ 380 (472)
T 4g1t_A 313 LELIGHAVAHLKKADEANDNLF-------RVCSILASLHALADQYEEAEYYFQKEFSK-----ELTPVAKQLLHLRYGNF 380 (472)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTC-------CCHHHHHHHHHHTTCHHHHHHHHHHHHHS-----CCCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHhhcCCchh-------hhhhhHHHHHHHhccHHHHHHHHHHHHhc-----CCCChHHHHHHHHHHHH
Confidence 346677888888877755442 36778999999999999999999999875 22222333456677754
Q ss_pred -HHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccchhhhCCCChhHHHHHHHHHHHHHHhccHHHH
Q 005139 610 -CVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGREEKLGTANPDVDDEKRRLAELLKEAGRVRSR 688 (712)
Q Consensus 610 -~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~l~~~~p~~~~~~~~la~~~~~~g~~~~A 688 (712)
+...|++++|+.+|++++.+ .|+.......+..+... .+.....+|.++.++..||.+|..+|++++|
T Consensus 381 ~~~~~~~~~~Ai~~y~kal~i--------~~~~~~~~~~~~~l~~~---~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A 449 (472)
T 4g1t_A 381 QLYQMKCEDKAIHHFIEGVKI--------NQKSREKEKMKDKLQKI---AKMRLSKNGADSEALHVLAFLQELNEKMQQA 449 (472)
T ss_dssp HHHTSSCHHHHHHHHHHHHHS--------CCCCHHHHHHHHHHHHH---HHHHHHHCC-CTTHHHHHHHHHHHHHHCC--
T ss_pred HHHHCCCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHH---HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 45789999999999999998 55544332222211111 1222345788888999999999999999999
Q ss_pred HHHHHHHHHHhccc
Q 005139 689 KAQSLETLLDANSR 702 (712)
Q Consensus 689 ~~~~l~~~l~~~p~ 702 (712)
+ +.|+++|+..|.
T Consensus 450 ~-~~y~kALe~~~~ 462 (472)
T 4g1t_A 450 D-EDSERGLESGSL 462 (472)
T ss_dssp --------------
T ss_pred H-HHHHHHHhcCCC
Confidence 9 999999998876
No 9
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.97 E-value=2e-28 Score=260.41 Aligned_cols=345 Identities=17% Similarity=0.184 Sum_probs=300.1
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 005139 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344 (712)
Q Consensus 265 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 344 (712)
+..+..+|.++...|++++|+.+|++++.+. +.++.....++..+|.++...|++++|+.+|++++.+.... .
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~ 81 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--G 81 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--T
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-----cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--c
Confidence 5567889999999999999999999999885 55555456679999999999999999999999999998764 3
Q ss_pred CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCC-----------------
Q 005139 345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGD----------------- 407 (712)
Q Consensus 345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~----------------- 407 (712)
+.+..+.++..+|.++...|++++|+.++++++.+.+.... ....+.++..+|.++...|+
T Consensus 82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a 159 (406)
T 3sf4_A 82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND--KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEV 159 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc--ccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhH
Confidence 45678899999999999999999999999999999988763 35667789999999999999
Q ss_pred ---HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 005139 408 ---HEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY 484 (712)
Q Consensus 408 ---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 484 (712)
+++|+.++.+++.+....++.+..+.++..+|.+|...|++++|+.++++++.+..... +.+..+.++..+|.+|
T Consensus 160 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~ 237 (406)
T 3sf4_A 160 RDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERRAYSNLGNAY 237 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHH
Confidence 99999999999999888888888999999999999999999999999999999988753 3566778999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 005139 485 NRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQM 564 (712)
Q Consensus 485 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 564 (712)
...|++++|+.++++++.+.... .+......++..+|.+|...|++++|+.++++++.+.+.. +.......++..+
T Consensus 238 ~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l 313 (406)
T 3sf4_A 238 IFLGEFETASEYYKKTLLLARQL---KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-NDRIGEGRACWSL 313 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHHHhC---cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHH
Confidence 99999999999999999998773 3455668899999999999999999999999999998886 5555667789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 005139 565 GVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEA 626 (712)
Q Consensus 565 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 626 (712)
|.+|...|++++|+.+|++++.+....+.. .....++..+|.++...|+...+...+.+.
T Consensus 314 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 373 (406)
T 3sf4_A 314 GNAYTALGNHDQAMHFAEKHLEISREVGDK--SGELTARLNLSDLQMVLGLSYSTNNSIMSE 373 (406)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHTTSCC-------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--cchhHHHHHHHHHHHHhhHhHHHHHHHHHH
Confidence 999999999999999999999999887643 456789999999999999875444433333
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.97 E-value=1e-28 Score=266.89 Aligned_cols=353 Identities=14% Similarity=0.107 Sum_probs=272.6
Q ss_pred cccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHH
Q 005139 209 DVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVL 288 (712)
Q Consensus 209 ~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~ 288 (712)
.+......+|..+..++.+|..++..|+ +++|+.+|++++... |..+.++..+|.+|...|++++|+.+|
T Consensus 14 ~~~~~~~~~p~~~~~~~~~~~~~~~~g~-~~~A~~~~~~~l~~~---------p~~~~~~~~l~~~~~~~g~~~~A~~~~ 83 (450)
T 2y4t_A 14 GTENLYFQSMADVEKHLELGKKLLAAGQ-LADALSQFHAAVDGD---------PDNYIAYYRRATVFLAMGKSKAALPDL 83 (450)
T ss_dssp ---------CHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhC---------CccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5566677888999999999999999997 999999999998753 334778888999999999999999999
Q ss_pred HHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHH---HHHHHHHHHHHHhCC
Q 005139 289 EQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVG---ETCRYLAEAHVQALQ 365 (712)
Q Consensus 289 ~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~ 365 (712)
++++++. +..+ .++..+|.+|...|++++|+.+|++++.+ .|... .++..++.++.
T Consensus 84 ~~al~~~-----p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~---- 142 (450)
T 2y4t_A 84 TKVIQLK-----MDFT----AARLQRGHLLLKQGKLDEAEDDFKKVLKS--------NPSENEEKEAQSQLIKSDE---- 142 (450)
T ss_dssp HHHHHHC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------CCCHHHHHHHHHHHHHHHH----
T ss_pred HHHHhcC-----CCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhhHHHHHHHHHHHH----
Confidence 9998875 3333 35888999999999999999999998876 45544 55555554421
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHc
Q 005139 366 FSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL 445 (712)
Q Consensus 366 ~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 445 (712)
...+..+|.++...|++++|+.+|++++.. .|....++..+|.+|...
T Consensus 143 --------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~ 190 (450)
T 2y4t_A 143 --------------------------MQRLRSQALNAFGSGDYTAAIAFLDKILEV------CVWDAELRELRAECFIKE 190 (450)
T ss_dssp --------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHT
T ss_pred --------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHC
Confidence 113456677788888888888888888743 344457788888888889
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHH------
Q 005139 446 SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASG------ 519 (712)
Q Consensus 446 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~------ 519 (712)
|++++|+.+|++++.. .|....++..+|.+|...|++++|+.+|++++.+... .......
T Consensus 191 g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 191 GEPRKAISDLKAASKL--------KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD------HKRCFAHYKQVKK 256 (450)
T ss_dssp TCGGGGHHHHHHHHHH--------HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------hHHHHHHHHHHHH
Confidence 9999999988888887 4555678888888999999999999999888877322 2222211
Q ss_pred ---HHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC
Q 005139 520 ---LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS 596 (712)
Q Consensus 520 ---~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 596 (712)
+..+|.++...|++++|+.+|++++.+.+. .......++..+|.++...|++++|+.++++++.+ .
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~ 325 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPS---IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--------E 325 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS---SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc---chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------C
Confidence 234499999999999999999999986433 12223467889999999999999999999999986 1
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005139 597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657 (712)
Q Consensus 597 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~ 657 (712)
+....++..+|.+|...|++++|+.+|++++++ +|+...++..++.+....++
T Consensus 326 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~ 378 (450)
T 2y4t_A 326 PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--------NENDQQIREGLEKAQRLLKQ 378 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcchHHHHHHHHHHHHHhhc
Confidence 223478999999999999999999999999998 88888899999977665543
No 11
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.97 E-value=5.8e-28 Score=256.87 Aligned_cols=333 Identities=16% Similarity=0.172 Sum_probs=295.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCh-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCC
Q 005139 308 FAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDP-RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386 (712)
Q Consensus 308 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 386 (712)
+..+..+|.++...|++++|+.+|++++.+ .+.++ ..+.++..+|.++...|++++|+.++++++.+.....
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-- 81 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQV-----GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG-- 81 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc-----CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc--
Confidence 445889999999999999999999999998 22233 3468899999999999999999999999999988765
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC-------------------
Q 005139 387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR------------------- 447 (712)
Q Consensus 387 ~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~------------------- 447 (712)
..+..+.++..+|.++...|++++|+.++.+++.+....++....+.++..+|.+|...|+
T Consensus 82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~ 161 (406)
T 3sf4_A 82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD 161 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHH
Confidence 3466688999999999999999999999999999988887778889999999999999999
Q ss_pred -HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHH
Q 005139 448 -YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSI 526 (712)
Q Consensus 448 -~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~ 526 (712)
+++|+.++++++.+..... +.+....++..+|.+|...|++++|+.++++++.+.... .+....+.++..+|.+
T Consensus 162 ~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~ 236 (406)
T 3sf4_A 162 ALQAAVDFYEENLSLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF---GDKAAERRAYSNLGNA 236 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHH
Confidence 9999999999999988764 467788899999999999999999999999999998773 3455677899999999
Q ss_pred HHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q 005139 527 YESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQM 606 (712)
Q Consensus 527 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 606 (712)
|...|++++|+.++++++.+.+.. +.......++..+|.+|...|++++|+.+|++++.+....+. ......++..+
T Consensus 237 ~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~l 313 (406)
T 3sf4_A 237 YIFLGEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND--RIGEGRACWSL 313 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHHHHhC-cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHH
Confidence 999999999999999999999886 555566788999999999999999999999999999887654 34567899999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005139 607 GLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657 (712)
Q Consensus 607 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~ 657 (712)
|.+|...|++++|+.+|++++++...... .+....++..+|.+|..+|+
T Consensus 314 a~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 362 (406)
T 3sf4_A 314 GNAYTALGNHDQAMHFAEKHLEISREVGD--KSGELTARLNLSDLQMVLGL 362 (406)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcC--CcchhHHHHHHHHHHHHhhH
Confidence 99999999999999999999999877633 56778899999999999987
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.97 E-value=3.1e-29 Score=277.54 Aligned_cols=385 Identities=17% Similarity=0.137 Sum_probs=305.5
Q ss_pred cccccCCCcccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 005139 188 KKSNAGATPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMC 267 (712)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~ 267 (712)
..+...+..+...|++.+|+..+..+...+|....++..+|.+++..|+ +++|+..|++++.+. |....+
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~---------p~~~~~ 95 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGD-LEKVIEFTTKALEIK---------PDHSKA 95 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHC---------TTCHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcC---------CchHHH
Confidence 3455677788999999999988999988999999999999999999997 999999999999864 445778
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhccc-------------------------------ch-HHH--------
Q 005139 268 LHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQE-------------------------------HA-LAK-------- 307 (712)
Q Consensus 268 l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~-~~~-------- 307 (712)
+..+|.++...|++++|+..|+ ++.+.+...... .+ ...
T Consensus 96 ~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (537)
T 3fp2_A 96 LLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF 174 (537)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc
Confidence 9999999999999999999995 654432111000 00 000
Q ss_pred -------------------HHHHHHHH--------HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChh----HHHHHHHH
Q 005139 308 -------------------FAGHMQLG--------DTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR----VGETCRYL 356 (712)
Q Consensus 308 -------------------~~~~~~lg--------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~~l 356 (712)
......++ ......|++++|+..|+++++.. ++++. .+.++..+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-----p~~~~~~~~~~~~~~~~ 249 (537)
T 3fp2_A 175 DSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-----TVDDPLRENAALALCYT 249 (537)
T ss_dssp CHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-----CCcchhhHHHHHHHHHH
Confidence 00111222 22222345666666666665542 22222 36688999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Q 005139 357 AEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDC 436 (712)
Q Consensus 357 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 436 (712)
|.++...|++++|+.++++++.+.+. ..++..+|.++...|++++|+.+|++++.. .+....++.
T Consensus 250 g~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~ 314 (537)
T 3fp2_A 250 GIFHFLKNNLLDAQVLLQESINLHPT---------PNSYIFLALTLADKENSQEFFKFFQKAVDL------NPEYPPTYY 314 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCC---------HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH------CTTCHHHHH
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCC---------chHHHHHHHHHHHhcCHHHHHHHHHHHhcc------CCCCHHHHH
Confidence 99999999999999999999987532 347889999999999999999999999853 345567899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhH
Q 005139 437 SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI 516 (712)
Q Consensus 437 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 516 (712)
.+|.++...|++++|+.+|++++.+ .|....++..+|.++...|++++|+.+|++++... |..
T Consensus 315 ~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---------~~~ 377 (537)
T 3fp2_A 315 HRGQMYFILQDYKNAKEDFQKAQSL--------NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF---------PTL 377 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------TTC
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCC
Confidence 9999999999999999999999998 66667899999999999999999999999999983 334
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHH
Q 005139 517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML----------GNYSDSYDSFKNAIS 586 (712)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~ 586 (712)
..++..+|.++...|++++|+.+|++++.+.+........ ...+..+|.++... |++++|+.+|++++.
T Consensus 378 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 456 (537)
T 3fp2_A 378 PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG-IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE 456 (537)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST-THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH-HHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999877433333 33567789999999 999999999999998
Q ss_pred HHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139 587 KLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (712)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 629 (712)
+. +....++..+|.+|...|++++|+.+|++++++
T Consensus 457 ~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 457 LD--------PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hC--------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 61 223478999999999999999999999999998
No 13
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=8.7e-30 Score=277.24 Aligned_cols=381 Identities=14% Similarity=0.050 Sum_probs=272.9
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhch
Q 005139 215 LDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI 294 (712)
Q Consensus 215 ~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~ 294 (712)
.+++..+..+..+|.++...|+ +++|+++|++|+++.+.......++..+.++.++|.+|..+|++++|+.+|++++.+
T Consensus 45 ~~~~~~a~~yn~Lg~~~~~~G~-~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i 123 (472)
T 4g1t_A 45 QNREFKATMCNLLAYLKHLKGQ-NEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHV 123 (472)
T ss_dssp CC---CCHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 3455667888999999999997 999999999999999877655556777889999999999999999999999999999
Q ss_pred hhhhhcccchHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH---HhCCHHHH
Q 005139 295 PVIEEGQEHALAKFAGHMQLGDTYAML--GQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV---QALQFSEA 369 (712)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A 369 (712)
.+...++.++. ...++..+|.++... ++|++|+.+|++++++ +|....++..++.++. ..+++++|
T Consensus 124 ~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--------~p~~~~~~~~~~~~~~~l~~~~~~~~a 194 (472)
T 4g1t_A 124 CEKFSSPYRIE-SPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--------KPKNPEFTSGLAIASYRLDNWPPSQNA 194 (472)
T ss_dssp HHHSCCSSCCC-CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHSCCCCCT
T ss_pred hHhcccccchh-hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCchHHHHH
Confidence 77655544332 234577788777665 4799999999999998 5666777777777755 45677899
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHc
Q 005139 370 QKFCQMALDIHKDNGSPASLEEAADRRLMGLICE----TKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL 445 (712)
Q Consensus 370 ~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 445 (712)
+..+++++.+.+.. ..++..+|..+. ..|++++|+.++++++. ..|....++..+|.+|...
T Consensus 195 l~~~~~al~l~p~~--------~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~------~~~~~~~~~~~lg~~~~~~ 260 (472)
T 4g1t_A 195 IDPLRQAIRLNPDN--------QYLKVLLALKLHKMREEGEEEGEGEKLVEEALE------KAPGVTDVLRSAAKFYRRK 260 (472)
T ss_dssp HHHHHHHHHHCSSC--------HHHHHHHHHHHHHCC------CHHHHHHHHHHH------HCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhcCCcc--------hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH------hCccHHHHHHHHHHHHHHc
Confidence 99999999886433 224555665544 45788899999999874 3455677889999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHHHHhc
Q 005139 446 SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT-------------------GKLRESKSYCENALRIYEK 506 (712)
Q Consensus 446 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-------------------g~~~~A~~~~~~al~~~~~ 506 (712)
|++++|+..|++++++ +|....++..+|.+|... +.+++|+.+|++++.+
T Consensus 261 ~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--- 329 (472)
T 4g1t_A 261 DEPDKAIELLKKALEY--------IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--- 329 (472)
T ss_dssp TCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH---
T ss_pred CchHHHHHHHHHHHHh--------CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc---
Confidence 9999999999999998 888889999999988643 3356777788888777
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH-HHHcCCHHHHHHHHHHHH
Q 005139 507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM-YYMLGNYSDSYDSFKNAI 585 (712)
Q Consensus 507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al 585 (712)
.+....++..+|.+|...|++++|+.+|++++.+.+. ......++..+|.+ +...|++++|+.+|++++
T Consensus 330 ------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal 399 (472)
T 4g1t_A 330 ------NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT----PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV 399 (472)
T ss_dssp ------CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC----HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred ------CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC----ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3334566889999999999999999999999975321 11222345566654 457899999999999998
Q ss_pred HHHH-----------------HhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 005139 586 SKLR-----------------AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNL 648 (712)
Q Consensus 586 ~~~~-----------------~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~L 648 (712)
.+.. ..... .+..+.++..||.+|..+|++++|+++|++|+++ .|....+...+
T Consensus 400 ~i~~~~~~~~~~~~~l~~~~~~~l~~-~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~--------~~~~p~a~~~~ 470 (472)
T 4g1t_A 400 KINQKSREKEKMKDKLQKIAKMRLSK-NGADSEALHVLAFLQELNEKMQQADEDSERGLES--------GSLIPSASSWN 470 (472)
T ss_dssp HSCCCCHHHHHHHHHHHHHHHHHHHH-CC-CTTHHHHHHHHHHHHHHCC-------------------------------
T ss_pred hcCcccHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCCcHhhcC
Confidence 7521 00000 1122468999999999999999999999999998 44444454444
Q ss_pred H
Q 005139 649 A 649 (712)
Q Consensus 649 a 649 (712)
|
T Consensus 471 G 471 (472)
T 4g1t_A 471 G 471 (472)
T ss_dssp -
T ss_pred C
Confidence 3
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.97 E-value=8.5e-28 Score=250.76 Aligned_cols=337 Identities=11% Similarity=0.064 Sum_probs=277.7
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 005139 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344 (712)
Q Consensus 265 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 344 (712)
+..+..+|.+++..|++++|+.+|++++... +.++ .++..+|.++...|++++|+.+|++++.+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-----p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------- 66 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-----PDNY----IAYYRRATVFLAMGKSKAALPDLTKVIAL------- 66 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----cccH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Confidence 5678889999999999999999999999875 4443 35999999999999999999999999998
Q ss_pred CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH---hcCCCC----CHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005139 345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHK---DNGSPA----SLEEAADRRLMGLICETKGDHEAALEHLVL 417 (712)
Q Consensus 345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~----~~~~a~~~~~la~~~~~~g~~~~A~~~~~~ 417 (712)
.|....++..+|.++...|++++|+.+|++++.+.+ ...... .......+..+|.++...|++++|+.++++
T Consensus 67 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 145 (359)
T 3ieg_A 67 -KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDK 145 (359)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 577778999999999999999999999999987654 221100 000011123348999999999999999999
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 005139 418 ASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYC 497 (712)
Q Consensus 418 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 497 (712)
++.. .|....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+.+|
T Consensus 146 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~ 211 (359)
T 3ieg_A 146 ILEV------CVWDAELRELRAECFIKEGEPRKAISDLKAASKL--------KSDNTEAFYKISTLYYQLGDHELSLSEV 211 (359)
T ss_dssp HHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CSCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHh------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9853 3445678999999999999999999999999987 6777789999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCChhHHHH---------HHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHH
Q 005139 498 ENALRIYEKPVPGVPPEEIASG---------LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMY 568 (712)
Q Consensus 498 ~~al~~~~~~~~~~~~~~~~~~---------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~ 568 (712)
++++.+... .+..... ...+|.++...|++++|+..+++++...+.. ......++..+|.++
T Consensus 212 ~~a~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~la~~~ 282 (359)
T 3ieg_A 212 RECLKLDQD------HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSV---AEYTVRSKERICHCF 282 (359)
T ss_dssp HHHHHHCTT------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSS---HHHHHHHHHHHHHHH
T ss_pred HHHHhhCcc------chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHHHH
Confidence 999998433 3322222 2355899999999999999999999875432 223345677899999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 005139 569 YMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNL 648 (712)
Q Consensus 569 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~L 648 (712)
...|++++|+.+|++++.+ . +....++..+|.++...|++++|+.+|++++++ +|+...++..|
T Consensus 283 ~~~~~~~~A~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~l 346 (359)
T 3ieg_A 283 SKDEKPVEAIRICSEVLQM-----E---PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--------NENDQQIREGL 346 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHH-----C---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh-----C---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChHHHHHH
Confidence 9999999999999999986 1 223478999999999999999999999999998 88888888888
Q ss_pred HHHHHHccc
Q 005139 649 AGTYDAIGR 657 (712)
Q Consensus 649 a~~~~~~g~ 657 (712)
+.++..+++
T Consensus 347 ~~~~~~~~~ 355 (359)
T 3ieg_A 347 EKAQRLLKQ 355 (359)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888776553
No 15
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=4.8e-27 Score=253.75 Aligned_cols=342 Identities=15% Similarity=0.140 Sum_probs=285.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCC
Q 005139 307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386 (712)
Q Consensus 307 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 386 (712)
....+..+|..+...|++++|+.+|++++.. +|....++..+|.++...|++++|+.+|++++...+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--- 93 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF--- 93 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc---
Confidence 3456999999999999999999999999987 57778999999999999999999999999999886433
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHH---HH------------HHHHHHHHHHcCCHHHH
Q 005139 387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVA---SV------------DCSIGDTYLSLSRYDEA 451 (712)
Q Consensus 387 ~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~---~~------------~~~la~~~~~~g~~~~A 451 (712)
..++..+|.+|...|++++|+.+|++++. ..|... .+ +..+|.++...|++++|
T Consensus 94 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 94 -----TAARLQRGHLLLKQGKLDEAEDDFKKVLK------SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA 162 (450)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHT------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh------cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 45789999999999999999999999873 233322 33 34557889999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcc
Q 005139 452 GFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN 531 (712)
Q Consensus 452 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 531 (712)
+.+|++++.. .|....++..+|.+|...|++++|+.+|++++..... ...++..+|.+|...|
T Consensus 163 ~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g 225 (450)
T 2y4t_A 163 IAFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKND---------NTEAFYKISTLYYQLG 225 (450)
T ss_dssp HHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS---------CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHh--------CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcC
Confidence 9999999988 7777889999999999999999999999999998433 4678999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCCCcHHHH---------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHH
Q 005139 532 ELEQAIKLLQKALKIYNDAPGQQSTVAGI---------EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVA 602 (712)
Q Consensus 532 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~---------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 602 (712)
++++|+.+|++++.+.+.. ...... +..+|.++...|++++|+.+|++++.+ .+..+.....+
T Consensus 226 ~~~~A~~~~~~~~~~~p~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~~ 297 (450)
T 2y4t_A 226 DHELSLSEVRECLKLDQDH----KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT----EPSIAEYTVRS 297 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CCSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCh----HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCcchHHHHHH
Confidence 9999999999999775433 111111 234499999999999999999999985 23333334568
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCCCChhHHHHHHHH
Q 005139 603 LNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGTANPDVDDEKRRL 675 (712)
Q Consensus 603 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~~~p~~~~~~~~l 675 (712)
+..+|.++...|++++|+.+|++++.+ +|+...++..+|.+|...|+ .+.+....|+...++..+
T Consensus 298 ~~~l~~~~~~~g~~~~A~~~~~~a~~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 369 (450)
T 2y4t_A 298 KERICHCFSKDEKPVEAIRVCSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGL 369 (450)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 999999999999999999999999998 88889999999999999999 455556788888999999
Q ss_pred HHH------------HHHhc-----cHHHHHHHHHHH-HHHhccc-CC
Q 005139 676 AEL------------LKEAG-----RVRSRKAQSLET-LLDANSR-VN 704 (712)
Q Consensus 676 a~~------------~~~~g-----~~~~A~~~~l~~-~l~~~p~-i~ 704 (712)
+.+ |...| +.++++ +.|.+ +++.+|+ ..
T Consensus 370 ~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~-~~y~~~~l~~~pd~~~ 416 (450)
T 2y4t_A 370 EKAQRLLKQSQKRDYYKILGVKRNAKKQEII-KAYRKLALQWHPDNFQ 416 (450)
T ss_dssp HHHHHHHHHHHSCCSGGGSCSSTTCCTTHHH-HHHHHHHHHSCGGGCC
T ss_pred HHHHHHhhcccchhHHHHhCCCccCCHHHHH-HHHHHHHHHhCCCCCC
Confidence 955 44445 455667 78886 8889998 43
No 16
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.96 E-value=8.9e-27 Score=248.51 Aligned_cols=315 Identities=17% Similarity=0.183 Sum_probs=279.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 005139 262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV 341 (712)
Q Consensus 262 ~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 341 (712)
+..+..+..+|..++..|++++|+.+|++++++. +.++.....++..+|.+|...|++++|+.+|++++.+.+..
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 119 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAG-----TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM 119 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-----ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 4567778889999999999999999999999985 55555556679999999999999999999999999998764
Q ss_pred hCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCC--------------
Q 005139 342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGD-------------- 407 (712)
Q Consensus 342 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~-------------- 407 (712)
.+.+....++..+|.+|...|++++|+.++++++.+.+... +....+.++..+|.+|...|+
T Consensus 120 --~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a 195 (411)
T 4a1s_A 120 --NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG--DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDV 195 (411)
T ss_dssp --TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHH
T ss_pred --cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHcCcccccccchhhhhhh
Confidence 34578889999999999999999999999999999988765 346668899999999999999
Q ss_pred ---HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 005139 408 ---HEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY 484 (712)
Q Consensus 408 ---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 484 (712)
+++|+.++.+++.+....++.+..+.++..+|.+|...|++++|+.++++++.+..... +......++..+|.+|
T Consensus 196 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~ 273 (411)
T 4a1s_A 196 KEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG--DRAAERRANSNLGNSH 273 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHH
Confidence 99999999999998888788888899999999999999999999999999999987753 3456677999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 005139 485 NRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQM 564 (712)
Q Consensus 485 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 564 (712)
...|++++|+.+|++++.+.... ........++..+|.+|...|++++|+.++++++.+.+.. +.......++..+
T Consensus 274 ~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l 349 (411)
T 4a1s_A 274 IFLGQFEDAAEHYKRTLALAVEL---GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL-GDRIGEARACWSL 349 (411)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC-CChHHHHHHHHHH
Confidence 99999999999999999998763 3345568899999999999999999999999999998876 5555667789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 005139 565 GVMYYMLGNYSDSYDSFKNAISKLRAI 591 (712)
Q Consensus 565 a~~~~~~g~~~~A~~~~~~al~~~~~~ 591 (712)
|.+|...|++++|+.+|++++.+.+.+
T Consensus 350 a~~~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 350 GNAHSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999986544
No 17
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.96 E-value=2.6e-26 Score=236.90 Aligned_cols=313 Identities=19% Similarity=0.229 Sum_probs=273.9
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 005139 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344 (712)
Q Consensus 265 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 344 (712)
...+...|..+...|++++|+.+|++++.+. +.++.....++..+|.++...|++++|+.++++++.+.... .
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~ 77 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--G 77 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--c
Confidence 4456778999999999999999999999975 55555456679999999999999999999999999998765 3
Q ss_pred CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCC-----------------
Q 005139 345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGD----------------- 407 (712)
Q Consensus 345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~----------------- 407 (712)
+.+....++..+|.++...|++++|+.++++++.+.+.... ....+.++..+|.++...|+
T Consensus 78 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a 155 (338)
T 3ro2_A 78 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND--KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDV 155 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHH
T ss_pred ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhH
Confidence 35677889999999999999999999999999999988753 35567789999999999999
Q ss_pred ---HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 005139 408 ---HEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMY 484 (712)
Q Consensus 408 ---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 484 (712)
+++|+.++.+++.+....++.+....++..+|.++...|++++|+.++++++.+..... +.+....++..+|.++
T Consensus 156 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~~ 233 (338)
T 3ro2_A 156 RNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERRAYSNLGNAY 233 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHH
Confidence 99999999999988888788888899999999999999999999999999999987754 3566677999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 005139 485 NRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQM 564 (712)
Q Consensus 485 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 564 (712)
...|++++|+.++++++.+.... .+.+....++..+|.++...|++++|+.++++++.+.+.. +.......++..+
T Consensus 234 ~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l 309 (338)
T 3ro2_A 234 IFLGEFETASEYYKKTLLLARQL---KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-KDRIGEGRACWSL 309 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhh---cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHH
Confidence 99999999999999999998773 3455668899999999999999999999999999998876 5555667789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 005139 565 GVMYYMLGNYSDSYDSFKNAISKLRAIG 592 (712)
Q Consensus 565 a~~~~~~g~~~~A~~~~~~al~~~~~~~ 592 (712)
|.+|...|++++|..+|++++.+.+..+
T Consensus 310 a~~~~~~g~~~~A~~~~~~a~~~~~~~~ 337 (338)
T 3ro2_A 310 GNAYTALGNHDQAMHFAEKHLEISREVG 337 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHC-----
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999866543
No 18
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.96 E-value=2.7e-26 Score=239.31 Aligned_cols=326 Identities=14% Similarity=0.142 Sum_probs=267.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCC
Q 005139 308 FAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA 387 (712)
Q Consensus 308 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 387 (712)
+..++.+|.++...|++++|+.+|++++.. +|....++..+|.++...|++++|+.++++++.+.+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---- 70 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF---- 70 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc----
Confidence 346899999999999999999999999997 67778899999999999999999999999999885432
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh---hHHHHHHHH------------HHHHHHcCCHHHHH
Q 005139 388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA---EVASVDCSI------------GDTYLSLSRYDEAG 452 (712)
Q Consensus 388 ~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~l------------a~~~~~~g~~~~A~ 452 (712)
..++..+|.++...|++++|+.+|++++. ..| ....++..+ |.++...|++++|+
T Consensus 71 ----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~ 140 (359)
T 3ieg_A 71 ----TAARLQRGHLLLKQGKLDEAEDDFKKVLK------SNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAI 140 (359)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHT------SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ----chHHHHHHHHHHHcCChHHHHHHHHHHHh------cCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 34789999999999999999999999983 445 555555555 79999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHccc
Q 005139 453 FAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNE 532 (712)
Q Consensus 453 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 532 (712)
.++++++.. .|....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|+
T Consensus 141 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~~~~la~~~~~~~~ 203 (359)
T 3ieg_A 141 TFLDKILEV--------CVWDAELRELRAECFIKEGEPRKAISDLKAASKL---------KSDNTEAFYKISTLYYQLGD 203 (359)
T ss_dssp HHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---------CSCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHh--------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCC
Confidence 999999998 6777889999999999999999999999999987 23346789999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCc-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 005139 533 LEQAIKLLQKALKIYNDAPGQQST-----VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMG 607 (712)
Q Consensus 533 ~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg 607 (712)
+++|+.++++++...+........ .......+|.++...|++++|+.+|++++... +..+.....++..+|
T Consensus 204 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~la 279 (359)
T 3ieg_A 204 HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE----PSVAEYTVRSKERIC 279 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCchHHHHHHHHHHH
Confidence 999999999999875443110000 00113356899999999999999999998853 333334446788899
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCCCChhHHHHHHHHHHHHH
Q 005139 608 LACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGTANPDVDDEKRRLAELLK 680 (712)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~~~p~~~~~~~~la~~~~ 680 (712)
.++...|++++|+.+|++++.+ +|+...++..+|.+|...|+ .+.....+|+...++..|+.++.
T Consensus 280 ~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 280 HCFSKDEKPVEAIRICSEVLQM--------EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 9999999999999999999998 77777788888888887777 34444566777777777777766
Q ss_pred Hhcc
Q 005139 681 EAGR 684 (712)
Q Consensus 681 ~~g~ 684 (712)
..++
T Consensus 352 ~~~~ 355 (359)
T 3ieg_A 352 LLKQ 355 (359)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 19
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.96 E-value=3.8e-26 Score=243.62 Aligned_cols=311 Identities=14% Similarity=0.140 Sum_probs=275.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCh-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Q 005139 307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDP-RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385 (712)
Q Consensus 307 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 385 (712)
....+..+|..+...|++++|+.+|++++++ .++++ ..+.++..+|.+|...|++++|+.++++++.+.....
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~- 120 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQA-----GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN- 120 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-----cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc-
Confidence 4456889999999999999999999999997 22233 3457899999999999999999999999999987765
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC-----------------H
Q 005139 386 PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR-----------------Y 448 (712)
Q Consensus 386 ~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-----------------~ 448 (712)
+.+..+.++..+|.+|...|++++|+.+|++++......++.+....++..+|.+|...|+ +
T Consensus 121 -~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~ 199 (411)
T 4a1s_A 121 -DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEAL 199 (411)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHH
T ss_pred -CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHH
Confidence 3466788999999999999999999999999999988888888899999999999999999 9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHH
Q 005139 449 DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYE 528 (712)
Q Consensus 449 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~ 528 (712)
++|+.++++++.+..... +.+....++..+|.+|...|++++|+.+|++++.+.... ........++..+|.+|.
T Consensus 200 ~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~ 274 (411)
T 4a1s_A 200 TRAVEFYQENLKLMRDLG--DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF---GDRAAERRANSNLGNSHI 274 (411)
T ss_dssp HHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHH
Confidence 999999999999988774 357788899999999999999999999999999998763 234556778999999999
Q ss_pred HcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 005139 529 SMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGL 608 (712)
Q Consensus 529 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~ 608 (712)
..|++++|+.+|++++.+.+.. +.......++..+|.+|...|++++|+.+|++++.+....+. ......++..+|.
T Consensus 275 ~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la~ 351 (411)
T 4a1s_A 275 FLGQFEDAAEHYKRTLALAVEL-GEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD--RIGEARACWSLGN 351 (411)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC--hHHHHHHHHHHHH
Confidence 9999999999999999999876 555566788999999999999999999999999999888754 3456789999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHH
Q 005139 609 ACVQRYSINEAVELFEEARSILEQ 632 (712)
Q Consensus 609 ~~~~~g~~~~A~~~~~~al~~~~~ 632 (712)
+|...|++++|+.+|++++.+.++
T Consensus 352 ~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 352 AHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHhccHHHHHHHHHHHHHHHhh
Confidence 999999999999999999998433
No 20
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.96 E-value=1.6e-25 Score=230.82 Aligned_cols=309 Identities=16% Similarity=0.170 Sum_probs=272.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCh-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCC
Q 005139 309 AGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDP-RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA 387 (712)
Q Consensus 309 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 387 (712)
..+...|..+...|++++|+.+|+++++.. +.++ ....++..+|.++...|++++|+.++++++.+..... .
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~ 78 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-----TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG--D 78 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--C
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-----cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc--c
Confidence 357889999999999999999999999972 2232 3467899999999999999999999999999987765 3
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC--------------------
Q 005139 388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR-------------------- 447 (712)
Q Consensus 388 ~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-------------------- 447 (712)
.+..+.++..+|.++...|++++|+.++.+++.+....++....+.++..+|.++...|+
T Consensus 79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (338)
T 3ro2_A 79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA 158 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH
Confidence 456678899999999999999999999999999998888888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHH
Q 005139 448 YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIY 527 (712)
Q Consensus 448 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~ 527 (712)
+++|+.++++++.+..... +.+....++..+|.++...|++++|+.++++++.+.... ........++..+|.++
T Consensus 159 ~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~l~~~~ 233 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF---GDKAAERRAYSNLGNAY 233 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHH
Confidence 9999999999999988764 356778899999999999999999999999999998763 33556677999999999
Q ss_pred HHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 005139 528 ESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMG 607 (712)
Q Consensus 528 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg 607 (712)
...|++++|+.++++++.+.+.. +.......++..+|.++...|++++|+.++++++.+....+. ......++..+|
T Consensus 234 ~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~~~~~~~~~~la 310 (338)
T 3ro2_A 234 IFLGEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD--RIGEGRACWSLG 310 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC--cHHHHHHHHHHH
Confidence 99999999999999999999886 555566778999999999999999999999999999887765 345567899999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHH
Q 005139 608 LACVQRYSINEAVELFEEARSILEQ 632 (712)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~al~~~~~ 632 (712)
.+|...|++++|..+|++++.+..+
T Consensus 311 ~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 311 NAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998544
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.95 E-value=5.6e-27 Score=245.92 Aligned_cols=318 Identities=16% Similarity=0.138 Sum_probs=250.7
Q ss_pred HHHHHcCCHhHHHH-HHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHH
Q 005139 273 AIYCSLGQYNEAIP-VLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGE 351 (712)
Q Consensus 273 ~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 351 (712)
.++...|+|++|+. .|++++.+. +..+......++.+|.++...|++++|+.+|+++++. +|....
T Consensus 33 ~~~~~~~~~~~a~~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~ 99 (368)
T 1fch_A 33 EAHPWLSDYDDLTSATYDKGYQFE-----EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--------DPKHME 99 (368)
T ss_dssp -------------CHHHHCCCCCC-----SSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHH
T ss_pred hhhHHHHHHHHHHhhhhhHHHhcC-----CCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH
Confidence 36777899999999 999999875 3333222345889999999999999999999999987 677788
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChh-
Q 005139 352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE- 430 (712)
Q Consensus 352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~- 430 (712)
++..+|.++...|++++|+.+|++++.+.+.. ..++..+|.++...|++++|+.+|++++...........
T Consensus 100 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 171 (368)
T 1fch_A 100 AWQYLGTTQAENEQELLAISALRRCLELKPDN--------QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTP 171 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence 99999999999999999999999999886442 447899999999999999999999999854221110000
Q ss_pred ---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005139 431 ---------VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA--VASVFVRLADMYNRTGKLRESKSYCEN 499 (712)
Q Consensus 431 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~ 499 (712)
....+..++.++ ..|++++|+.+|++++.+ .|. ...++..+|.++...|++++|+.+|++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 242 (368)
T 1fch_A 172 AEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRL--------DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 242 (368)
T ss_dssp --------------CTTHHHH-HHHHHHHHHHHHHHHHHH--------STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHh--------CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 011122466666 899999999999999998 666 678999999999999999999999999
Q ss_pred HHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Q 005139 500 ALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD 579 (712)
Q Consensus 500 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 579 (712)
++.+ .|....++..+|.++...|++++|+.+|++++.+.+.. ..++..+|.+|...|++++|+.
T Consensus 243 al~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~ 306 (368)
T 1fch_A 243 ALSV---------RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY-------IRSRYNLGISCINLGAHREAVE 306 (368)
T ss_dssp HHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHh---------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHCCCHHHHHH
Confidence 9998 33346789999999999999999999999999985433 4688999999999999999999
Q ss_pred HHHHHHHHHHHhCCC---CChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Q 005139 580 SFKNAISKLRAIGER---KSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP 636 (712)
Q Consensus 580 ~~~~al~~~~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 636 (712)
+|++++.+.....+. ..+....++..+|.++..+|++++|..+++++++.+.+.++.
T Consensus 307 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 366 (368)
T 1fch_A 307 HFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFGL 366 (368)
T ss_dssp HHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHhcCC
Confidence 999999986543211 112235789999999999999999999999999998887664
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.95 E-value=1e-24 Score=238.12 Aligned_cols=381 Identities=14% Similarity=0.157 Sum_probs=308.6
Q ss_pred CChHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH----cCCHhHHHHHHH
Q 005139 218 PGLGPLLLKQARELIS----SGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCS----LGQYNEAIPVLE 289 (712)
Q Consensus 218 p~~~~~l~~~a~~~~~----~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~----~g~~~~A~~~~~ 289 (712)
+..+.+++.+|..|+. .++ +++|+.+|+++++. . .+.+++.||.+|.. .+++++|+.+|+
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~-~~~A~~~~~~a~~~--------~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKD-LTQAMDWFRRAAEQ--------G---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHT--------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcC-HHHHHHHHHHHHHC--------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 4567899999999998 776 99999999999863 1 25688899999999 999999999999
Q ss_pred HhhchhhhhhcccchHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH---
Q 005139 290 QSIEIPVIEEGQEHALAKFAGHMQLGDTYAM----LGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ--- 362 (712)
Q Consensus 290 ~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--- 362 (712)
++.+.. + ..+++.||.+|.. .+++++|+.+|+++.+. ....++..||.+|..
T Consensus 104 ~a~~~~-------~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~Lg~~y~~g~g 162 (490)
T 2xm6_A 104 KAALKG-------L----PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ----------GRDSGQQSMGDAYFEGDG 162 (490)
T ss_dssp HHHHTT-------C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSS
T ss_pred HHHHCC-------C----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcCCC
Confidence 998642 2 2358899999999 89999999999998765 245789999999998
Q ss_pred -hCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 005139 363 -ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET----KGDHEAALEHLVLASMTMIANDQDAEVASVDCS 437 (712)
Q Consensus 363 -~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 437 (712)
.+++++|+.+|+++++.. . ..++..+|.+|.. .+++++|+.+|+++... ....+++.
T Consensus 163 ~~~d~~~A~~~~~~a~~~~----~------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--------~~~~a~~~ 224 (490)
T 2xm6_A 163 VTRDYVMAREWYSKAAEQG----N------VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--------GDELGQLH 224 (490)
T ss_dssp SCCCHHHHHHHHHHHHHTT----C------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------TCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCC----C------HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--------CCHHHHHH
Confidence 889999999999998641 1 4578999999998 99999999999998741 22467889
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhcCCC
Q 005139 438 IGDTYLS----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR----TGKLRESKSYCENALRIYEKPVP 509 (712)
Q Consensus 438 la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~ 509 (712)
+|.+|.. .+++++|+.+|+++++. ....++..+|.+|.. .+++++|+.+|+++.+.
T Consensus 225 lg~~y~~g~g~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~------ 288 (490)
T 2xm6_A 225 LADMYYFGIGVTQDYTQSRVLFSQSAEQ----------GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ------ 288 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHTT----------TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT------
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc------
Confidence 9999997 89999999999999864 124688899999999 99999999999999754
Q ss_pred CCCChhHHHHHHHHHHHHHHc-----ccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcC---CHHHHHHHH
Q 005139 510 GVPPEEIASGLTDVSSIYESM-----NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG---NYSDSYDSF 581 (712)
Q Consensus 510 ~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~ 581 (712)
....++..||.+|... +++++|+.+|+++.+. +. ..+++.+|.+|...| ++++|+.+|
T Consensus 289 -----~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-----~~----~~a~~~lg~~y~~~g~~~~~~~A~~~~ 354 (490)
T 2xm6_A 289 -----GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-----GD----ATAQANLGAIYFRLGSEEEHKKAVEWF 354 (490)
T ss_dssp -----TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-----TC----HHHHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-----CC----HHHHHHHHHHHHhCCCcccHHHHHHHH
Confidence 1256788999999998 9999999999999874 21 357889999999866 899999999
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH---
Q 005139 582 KNAISKLRAIGERKSAFFGVALNQMGLACVQ----RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA--- 654 (712)
Q Consensus 582 ~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~--- 654 (712)
+++++. . ...+++.||.+|.. .+++++|+.+|+++++. ....++++||.+|..
T Consensus 355 ~~a~~~-------~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----------~~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 355 RKAAAK-------G---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ----------GLSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHC-------C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHcCCC
Confidence 999873 1 23789999999999 89999999999999874 236789999999998
Q ss_pred -ccc-------hhhhCCCC---hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005139 655 -IGR-------EEKLGTAN---PDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 702 (712)
Q Consensus 655 -~g~-------~~~l~~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~ 702 (712)
.++ ++...... |..+.+...|+.++... ...|. +....+++..|.
T Consensus 415 ~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~--~~~a~-~~a~~~~~~~~~ 470 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQ--LQQAE-LLSQQYIEKYAP 470 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHH--HHHHH-HHHHHHHHHHCH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhH--HHHHH-HHHHHHHHHHHH
Confidence 666 22222222 66888888998887754 34444 444455554443
No 23
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.95 E-value=5.3e-26 Score=234.32 Aligned_cols=306 Identities=15% Similarity=0.131 Sum_probs=253.6
Q ss_pred cCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhh
Q 005139 213 AGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSI 292 (712)
Q Consensus 213 ~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al 292 (712)
.....+.....++.+|..++..|+ +++|+.+|++++... |....++..++.++...|++++|+.++++++
T Consensus 14 ~~~~~~~~~~~~~~~a~~~~~~g~-~~~A~~~~~~~l~~~---------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 83 (330)
T 3hym_B 14 SVDGLQENLDVVVSLAERHYYNCD-FKMCYKLTSVVMEKD---------PFHASCLPVHIGTLVELNKANELFYLSHKLV 83 (330)
T ss_dssp ------CCCTTHHHHHHHHHHTTC-HHHHHHHHHHHHHHC---------TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhhchhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcC---------CCChhhHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334455666788999999999997 999999999998753 2234566778999999999999999999999
Q ss_pred chhhhhhcccchHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHH
Q 005139 293 EIPVIEEGQEHALAKFAGHMQLGDTYAMLG-QLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQK 371 (712)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 371 (712)
... +.++. ++..+|.++...| ++++|+.+|++++.+ .|....++..+|.++...|++++|+.
T Consensus 84 ~~~-----~~~~~----~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~ 146 (330)
T 3hym_B 84 DLY-----PSNPV----SWFAVGCYYLMVGHKNEHARRYLSKATTL--------EKTYGPAWIAYGHSFAVESEHDQAMA 146 (330)
T ss_dssp HHC-----TTSTH----HHHHHHHHHHHSCSCHHHHHHHHHHHHTT--------CTTCTHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhC-----cCCHH----HHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHccCHHHHHH
Confidence 875 44443 4899999999999 999999999999987 56777889999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHH
Q 005139 372 FCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEA 451 (712)
Q Consensus 372 ~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 451 (712)
++++++.+.+... ..+..+|.++...|++++|+.+|++++ ...|....++..+|.++...|++++|
T Consensus 147 ~~~~a~~~~~~~~--------~~~~~l~~~~~~~~~~~~A~~~~~~al------~~~~~~~~~~~~l~~~~~~~~~~~~A 212 (330)
T 3hym_B 147 AYFTAAQLMKGCH--------LPMLYIGLEYGLTNNSKLAERFFSQAL------SIAPEDPFVMHEVGVVAFQNGEWKTA 212 (330)
T ss_dssp HHHHHHHHTTTCS--------HHHHHHHHHHHHTTCHHHHHHHHHHHH------TTCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhccccH--------HHHHHHHHHHHHHhhHHHHHHHHHHHH------HhCCCChHHHHHHHHHHHHcccHHHH
Confidence 9999999876543 267789999999999999999999998 34566678899999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHc
Q 005139 452 GFAYQKALTAFKTNKGENH-PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM 530 (712)
Q Consensus 452 ~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 530 (712)
+.++++++.+......... +....++..+|.++...|++++|+.+|++++.+. +....++..+|.++...
T Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---------~~~~~~~~~la~~~~~~ 283 (330)
T 3hym_B 213 EKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI---------PQNASTYSAIGYIHSLM 283 (330)
T ss_dssp HHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------TTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC---------ccchHHHHHHHHHHHHh
Confidence 9999999998665443221 4556799999999999999999999999999983 33467899999999999
Q ss_pred ccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHH-HHcCCHH
Q 005139 531 NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMY-YMLGNYS 575 (712)
Q Consensus 531 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~ 575 (712)
|++++|+.+|++++++.+.. ..++..++.++ ...|+.+
T Consensus 284 g~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 284 GNFENAVDYFHTALGLRRDD-------TFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TCHHHHHHHHHTTTTTCSCC-------HHHHHHHHHHHHTTTTC--
T ss_pred ccHHHHHHHHHHHHccCCCc-------hHHHHHHHHHHHHHhCchh
Confidence 99999999999998765433 45778889888 4555543
No 24
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.94 E-value=1.3e-25 Score=231.43 Aligned_cols=293 Identities=16% Similarity=0.114 Sum_probs=255.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCH
Q 005139 310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL 389 (712)
Q Consensus 310 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 389 (712)
.+..+|..+...|++++|+.+|++++.. +|....++..++.++...|++++|+.++++++...+..
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------ 89 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEK--------DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSN------ 89 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC------
Confidence 3788999999999999999999999987 56667788889999999999999999999999876543
Q ss_pred HHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 005139 390 EEAADRRLMGLICETKG-DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE 468 (712)
Q Consensus 390 ~~a~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 468 (712)
..++..+|.++...| ++++|+.+|++++. ..+....++..+|.++...|++++|+.+|++++.+
T Consensus 90 --~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------- 154 (330)
T 3hym_B 90 --PVSWFAVGCYYLMVGHKNEHARRYLSKATT------LEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL------- 154 (330)
T ss_dssp --THHHHHHHHHHHHSCSCHHHHHHHHHHHHT------TCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------
T ss_pred --HHHHHHHHHHHHHhhhhHHHHHHHHHHHHH------hCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Confidence 237899999999999 99999999999983 45566678999999999999999999999999998
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Q 005139 469 NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN 548 (712)
Q Consensus 469 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 548 (712)
.|....++..+|.++...|++++|+.+|++++.+. |....++..+|.++...|++++|+.++++++.+.+
T Consensus 155 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 224 (330)
T 3hym_B 155 -MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA---------PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224 (330)
T ss_dssp -TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred -ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---------CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhh
Confidence 66666788889999999999999999999999873 33467899999999999999999999999999987
Q ss_pred hCCCCC--CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 005139 549 DAPGQQ--STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEA 626 (712)
Q Consensus 549 ~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 626 (712)
...... +....++..+|.++...|++++|+.+|++++.+. +....++..+|.++...|++++|+.+|+++
T Consensus 225 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI--------PQNASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp TTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred hccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC--------ccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 653221 2334688899999999999999999999999862 122478999999999999999999999999
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHH-HHccc
Q 005139 627 RSILEQECGPYHPDTLGVYSNLAGTY-DAIGR 657 (712)
Q Consensus 627 l~~~~~~~~~~~p~~~~~~~~La~~~-~~~g~ 657 (712)
+++ .|+...++..++.++ ...|+
T Consensus 297 l~~--------~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 297 LGL--------RRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp TTT--------CSCCHHHHHHHHHHHHTTTTC
T ss_pred Hcc--------CCCchHHHHHHHHHHHHHhCc
Confidence 998 888899999999988 45554
No 25
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.94 E-value=4.6e-24 Score=225.23 Aligned_cols=353 Identities=12% Similarity=0.061 Sum_probs=276.1
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHHHHHcCCHhHHH-----------H
Q 005139 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI-AAIYCSLGQYNEAI-----------P 286 (712)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~l-a~~~~~~g~~~~A~-----------~ 286 (712)
+.....++-....+..++ +++|..+++++....... ..+.+....+..+ .......+.+..+. .
T Consensus 10 ~~v~~~l~~w~~~i~~~~-~~~A~~l~~~i~~~~~~~---~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~ 85 (383)
T 3ulq_A 10 SSIGEKINEWYMYIRRFS-IPDAEYLRREIKQELDQM---EEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSD 85 (383)
T ss_dssp HHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHH
T ss_pred HHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHhh---ccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhh
Confidence 455666777777888886 999999999987766443 2334433222222 22233344555554 5
Q ss_pred HHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCH
Q 005139 287 VLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQF 366 (712)
Q Consensus 287 ~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 366 (712)
.+++.-.... +.........++.+|.++...|++++|+.+|++++.+.... ++.+..+.++..+|.+|...|++
T Consensus 86 ~~~~i~~~~~----~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~~~ 159 (383)
T 3ulq_A 86 LLLEIDKKQA----RLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQT 159 (383)
T ss_dssp HHHHHHHHTH----HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCC----CchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCCH
Confidence 5554322210 11112233356779999999999999999999999986553 33456889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC
Q 005139 367 SEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS 446 (712)
Q Consensus 367 ~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 446 (712)
++|+.++++++.+.+...+ .....+.++..+|.+|...|++++|+.+|.+++.+....++.+..+.++.++|.+|..+|
T Consensus 160 ~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 238 (383)
T 3ulq_A 160 YFSMDYARQAYEIYKEHEA-YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS 238 (383)
T ss_dssp HHHHHHHHHHHHHHHTCST-THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC
Confidence 9999999999999988753 356678899999999999999999999999999999988888899999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHH
Q 005139 447 RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSI 526 (712)
Q Consensus 447 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~ 526 (712)
++++|+.+|++++.+.+.... .+..+.++..+|.+|..+|++++|+.++++++.+..... .+.....+..+|.+
T Consensus 239 ~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~l~~~ 312 (383)
T 3ulq_A 239 QYEDAIPYFKRAIAVFEESNI--LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAG----DVIYLSEFEFLKSL 312 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC--GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT----CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhcc--chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHH
Confidence 999999999999999887641 277899999999999999999999999999999987642 33344447789999
Q ss_pred HHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 005139 527 YESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE 593 (712)
Q Consensus 527 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 593 (712)
+...|++ ..+++++...... +..+....++..+|.+|...|++++|..+|++++.+.+.+..
T Consensus 313 ~~~~~~~----~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~ 374 (383)
T 3ulq_A 313 YLSGPDE----EAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQG 374 (383)
T ss_dssp HTSSCCH----HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred HhCCCcH----HHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence 9999995 4455555555554 444566678889999999999999999999999998776654
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.94 E-value=5.6e-26 Score=238.34 Aligned_cols=316 Identities=15% Similarity=0.100 Sum_probs=248.4
Q ss_pred HHHHcCCCHHHHHH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHH
Q 005139 230 ELISSGDNPQKALE-LALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKF 308 (712)
Q Consensus 230 ~~~~~g~~~~~A~~-~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 308 (712)
++...|+ |++|+. .|.+++.+. ..........++.+|.++...|++++|+.+|+++++.. +.++
T Consensus 34 ~~~~~~~-~~~a~~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-----p~~~---- 98 (368)
T 1fch_A 34 AHPWLSD-YDDLTSATYDKGYQFE-----EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-----PKHM---- 98 (368)
T ss_dssp -------------CHHHHCCCCCC-----SSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-----TTCH----
T ss_pred hhHHHHH-HHHHHhhhhhHHHhcC-----CCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCH----
Confidence 4455565 899998 888887542 11111124567789999999999999999999999875 4443
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCC
Q 005139 309 AGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPAS 388 (712)
Q Consensus 309 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 388 (712)
.++..+|.++...|++++|+.+|++++.+ .|....++..+|.++...|++++|+.++++++.+.+.......
T Consensus 99 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 170 (368)
T 1fch_A 99 EAWQYLGTTQAENEQELLAISALRRCLEL--------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVT 170 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence 35899999999999999999999999998 5777889999999999999999999999999987655432111
Q ss_pred H--------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChh--HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005139 389 L--------EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE--VASVDCSIGDTYLSLSRYDEAGFAYQKA 458 (712)
Q Consensus 389 ~--------~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a 458 (712)
. .....+..++.++ ..|++++|+.+|++++.. .|. ...++..+|.++...|++++|+.+|+++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 243 (368)
T 1fch_A 171 PAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRL------DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAA 243 (368)
T ss_dssp ---------------CTTHHHH-HHHHHHHHHHHHHHHHHH------STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHh------CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 0 0011222566666 999999999999999854 233 5678899999999999999999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHH
Q 005139 459 LTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIK 538 (712)
Q Consensus 459 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 538 (712)
+.+ .|....++..+|.++...|++++|+.+|++++.+ .|....++..+|.+|...|++++|+.
T Consensus 244 l~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~ 306 (368)
T 1fch_A 244 LSV--------RPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL---------QPGYIRSRYNLGISCINLGAHREAVE 306 (368)
T ss_dssp HHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHh--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 998 6777889999999999999999999999999998 34457789999999999999999999
Q ss_pred HHHHHHHHHHhCCCC----CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 005139 539 LLQKALKIYNDAPGQ----QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG 592 (712)
Q Consensus 539 ~~~~al~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 592 (712)
+|++++.+.+...+. ......++..+|.+|...|++++|..++.++++.++...
T Consensus 307 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 364 (368)
T 1fch_A 307 HFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMF 364 (368)
T ss_dssp HHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHHHHT
T ss_pred HHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHHHhc
Confidence 999999998876221 123357899999999999999999999999998876543
No 27
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.94 E-value=1.5e-23 Score=221.31 Aligned_cols=351 Identities=12% Similarity=0.016 Sum_probs=270.1
Q ss_pred HHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHH--HHHHHHcCCHHHHH-----------HH
Q 005139 264 LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQL--GDTYAMLGQLENSL-----------MC 330 (712)
Q Consensus 264 ~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l--g~~~~~~g~~~~A~-----------~~ 330 (712)
.+....+-...+...+++++|..+++++........ .+.. +..++.+ .......+.+..+. ..
T Consensus 11 ~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~--~~~~--~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~ 86 (383)
T 3ulq_A 11 SIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQME--EDQD--LHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDL 86 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSC--CCHH--HHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhc--cchH--HHHHHHHHHHHHHHHHhhcCcccccccccccchhhH
Confidence 344444456667889999999999999866543221 1221 1122222 22233344444444 44
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHH
Q 005139 331 YTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEA 410 (712)
Q Consensus 331 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~ 410 (712)
+++.-...... +.......++.+|.++...|++++|+.++++++.+..... +....+.++..+|.+|...|++++
T Consensus 87 ~~~i~~~~~~~---~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~~~~~~~~~~ 161 (383)
T 3ulq_A 87 LLEIDKKQARL---TGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVK--DRIEKAEFFFKMSESYYYMKQTYF 161 (383)
T ss_dssp HHHHHHHTHHH---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCC--CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhcCCCc---hhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCC--CHHHHHHHHHHHHHHHHHcCCHHH
Confidence 44432221110 0011223556699999999999999999999999877664 446678899999999999999999
Q ss_pred HHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Q 005139 411 ALEHLVLASMTMIANDQ-DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK 489 (712)
Q Consensus 411 A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 489 (712)
|+.++.+++.+....++ .+..+.++.++|.+|..+|++++|+.+|++++++..... +.+..+.++.++|.+|..+|+
T Consensus 162 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~~~g~ 239 (383)
T 3ulq_A 162 SMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK--QPQLMGRTLYNIGLCKNSQSQ 239 (383)
T ss_dssp HHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHCCC
Confidence 99999999999988776 678889999999999999999999999999999988763 467778899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Q 005139 490 LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYY 569 (712)
Q Consensus 490 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~ 569 (712)
+++|+.+|++++.+.... .+.+..+.++..+|.+|..+|++++|+.++++++.+.+.. +...... .+..+|.+|.
T Consensus 240 ~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~-~~~~l~~~~~ 314 (383)
T 3ulq_A 240 YEDAIPYFKRAIAVFEES---NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKA-GDVIYLS-EFEFLKSLYL 314 (383)
T ss_dssp HHHHHHHHHHHHHHHHHT---TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHH-HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhh---ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-CCHHHHH-HHHHHHHHHh
Confidence 999999999999998774 2236678999999999999999999999999999998876 3333333 3677999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Q 005139 570 MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP 636 (712)
Q Consensus 570 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 636 (712)
..|++ ..+++++..+++.. ..+....++..+|.+|...|++++|..+|++++.+.+++...
T Consensus 315 ~~~~~----~~~~~al~~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~~ 375 (383)
T 3ulq_A 315 SGPDE----EAIQGFFDFLESKM--LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGG 375 (383)
T ss_dssp SSCCH----HHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSSC
T ss_pred CCCcH----HHHHHHHHHHHHCc--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 99995 45556666665553 335567889999999999999999999999999997766543
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.93 E-value=2.6e-25 Score=233.19 Aligned_cols=288 Identities=14% Similarity=0.123 Sum_probs=233.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCC
Q 005139 308 FAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA 387 (712)
Q Consensus 308 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 387 (712)
...++.+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++.+.+..
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---- 132 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQ--------DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNN---- 132 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC----
Confidence 345899999999999999999999999998 67778999999999999999999999999999986433
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139 388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA----EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK 463 (712)
Q Consensus 388 ~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 463 (712)
..++..+|.+|...|++++|+.+|++++.......... .....+..+|.++...|++++|+.+|++++.+
T Consensus 133 ----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-- 206 (365)
T 4eqf_A 133 ----LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ-- 206 (365)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH--
T ss_pred ----HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--
Confidence 45799999999999999999999999986533221111 12345566799999999999999999999998
Q ss_pred HhcCCCCHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHH
Q 005139 464 TNKGENHPA--VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQ 541 (712)
Q Consensus 464 ~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 541 (712)
.|. ...++..+|.+|...|++++|+.+|++++.+ .|....++..+|.+|...|++++|+.+|+
T Consensus 207 ------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 271 (365)
T 4eqf_A 207 ------NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV---------RPEDYSLWNRLGATLANGDRSEEAVEAYT 271 (365)
T ss_dssp ------SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ------CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555 6789999999999999999999999999998 33457789999999999999999999999
Q ss_pred HHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC----hHHHHHHHHHHHHHHHhCCHH
Q 005139 542 KALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS----AFFGVALNQMGLACVQRYSIN 617 (712)
Q Consensus 542 ~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~~lg~~~~~~g~~~ 617 (712)
+++.+.+.. ..++..+|.+|...|++++|+.+|++++.+........+ .....++..++.++..+|+.+
T Consensus 272 ~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 344 (365)
T 4eqf_A 272 RALEIQPGF-------IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPE 344 (365)
T ss_dssp HHHHHCTTC-------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCCCc-------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHH
Confidence 999985543 568899999999999999999999999998765433211 113578999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 005139 618 EAVELFEEARSILEQECG 635 (712)
Q Consensus 618 ~A~~~~~~al~~~~~~~~ 635 (712)
.|..+.++.+..+++.++
T Consensus 345 ~a~~~~~~~l~~~~~~~~ 362 (365)
T 4eqf_A 345 LFQAANLGDLDVLLRAFN 362 (365)
T ss_dssp HHHHHHTTCCGGGTTTTT
T ss_pred HHHHHHHhhHHHHHHhcC
Confidence 999998887777665544
No 29
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.93 E-value=8.6e-24 Score=230.88 Aligned_cols=356 Identities=13% Similarity=0.055 Sum_probs=292.5
Q ss_pred cccccccCccccccCCCCCChHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 005139 200 RKGKLHKGQDVSEAGLDKPGLGPLLLKQARELIS----SGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIY 275 (712)
Q Consensus 200 ~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~----~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~ 275 (712)
.+++.+|+..+..+... ..+.+++.+|..|.. .++ +++|+.+|++|... ..+.+++.||.+|
T Consensus 56 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~-~~~A~~~~~~a~~~-----------~~~~a~~~Lg~~y 121 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQD-YAQAVIWYKKAALK-----------GLPQAQQNLGVMY 121 (490)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHT-----------TCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHC-----------CCHHHHHHHHHHH
Confidence 45666666444444332 567899999999998 876 99999999999863 1256788899999
Q ss_pred HH----cCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHhCCCCh
Q 005139 276 CS----LGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAM----LGQLENSLMCYTTGLEVQKQVLGETDP 347 (712)
Q Consensus 276 ~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~ 347 (712)
.. .+++++|+.+|+++.+.. + ..+++.||.+|.. .+++++|+.+|+++++.
T Consensus 122 ~~g~g~~~~~~~A~~~~~~a~~~~-------~----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~---------- 180 (490)
T 2xm6_A 122 HEGNGVKVDKAESVKWFRLAAEQG-------R----DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ---------- 180 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT-------C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCC-------C----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----------
Confidence 99 899999999999997642 2 2358999999998 89999999999999875
Q ss_pred hHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 005139 348 RVGETCRYLAEAHVQ----ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET----KGDHEAALEHLVLAS 419 (712)
Q Consensus 348 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~----~g~~~~A~~~~~~al 419 (712)
....++..||.+|.. .+++++|+.+|+++++.. . ..++..+|.+|.. .+++++|+.+|++++
T Consensus 181 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~------~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~ 250 (490)
T 2xm6_A 181 GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG----D------ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSA 250 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----C------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC----C------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 235789999999998 899999999999998642 1 3478899999997 899999999999987
Q ss_pred HHHHhCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-----CCH
Q 005139 420 MTMIANDQDAEVASVDCSIGDTYLS----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT-----GKL 490 (712)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~ 490 (712)
.. ....+++.+|.+|.. .+++++|+.+|+++.+. ....++..||.+|... +++
T Consensus 251 ~~--------~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~----------~~~~a~~~Lg~~y~~~~~g~~~~~ 312 (490)
T 2xm6_A 251 EQ--------GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ----------GNSDGQYYLAHLYDKGAEGVAKNR 312 (490)
T ss_dssp TT--------TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT----------TCHHHHHHHHHHHHHCBTTBCCCH
T ss_pred HC--------CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHcCCCCCcCCH
Confidence 31 235678899999999 99999999999999764 2246889999999998 999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcc---cHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Q 005139 491 RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN---ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM 567 (712)
Q Consensus 491 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~ 567 (712)
++|+.+|+++++.. ...++..+|.+|...| ++++|+.+|+++++. +. ..+++.+|.+
T Consensus 313 ~~A~~~~~~a~~~~-----------~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-----~~----~~a~~~Lg~~ 372 (490)
T 2xm6_A 313 EQAISWYTKSAEQG-----------DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-----GE----KAAQFNLGNA 372 (490)
T ss_dssp HHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-----TC----HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-----CC----HHHHHHHHHH
Confidence 99999999998751 2467899999999866 899999999999875 11 4688999999
Q ss_pred HHH----cCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 005139 568 YYM----LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ----RYSINEAVELFEEARSILEQECGPYHP 639 (712)
Q Consensus 568 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~p 639 (712)
|.. .+++++|+.+|+++++. .. ..++..||.+|.. .+++++|+.+|++|++.- ++.|
T Consensus 373 y~~g~g~~~~~~~A~~~~~~A~~~-------~~---~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~-----~~~~ 437 (490)
T 2xm6_A 373 LLQGKGVKKDEQQAAIWMRKAAEQ-------GL---SAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND-----MNLF 437 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH-----CCHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHhC-------CC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CCCc
Confidence 999 89999999999999873 12 4789999999999 899999999999999981 1115
Q ss_pred hhHHHHHHHHHHHH
Q 005139 640 DTLGVYSNLAGTYD 653 (712)
Q Consensus 640 ~~~~~~~~La~~~~ 653 (712)
....+..+|+.++.
T Consensus 438 ~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 438 GTENRNITEKKLTA 451 (490)
T ss_dssp HHHHHHHHHTTSCH
T ss_pred CCHHHHHHHHhcCH
Confidence 57778888876644
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.93 E-value=9.4e-25 Score=228.86 Aligned_cols=285 Identities=15% Similarity=0.074 Sum_probs=232.9
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 005139 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344 (712)
Q Consensus 265 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 344 (712)
+..++.+|.++...|++++|+.+|++++... +.++ .++..+|.+|...|++++|+.+|++++.+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-----p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~------- 128 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-----PGDA----EAWQFLGITQAENENEQAAIVALQRCLEL------- 128 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----cCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------
Confidence 4567889999999999999999999999875 4443 35999999999999999999999999998
Q ss_pred CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139 345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASL--EEAADRRLMGLICETKGDHEAALEHLVLASMTM 422 (712)
Q Consensus 345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~--~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 422 (712)
+|....++..+|.+|...|++++|+.++++++.+.+........ ..+..+..+|.++...|++++|+.+|++++..
T Consensus 129 -~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~- 206 (365)
T 4eqf_A 129 -QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ- 206 (365)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH-
T ss_pred -CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh-
Confidence 67778899999999999999999999999999987765432111 12345566799999999999999999999864
Q ss_pred HhCCCChh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005139 423 IANDQDAE--VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENA 500 (712)
Q Consensus 423 ~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 500 (712)
.|. ...++..+|.+|...|++++|+.+|++++++ .|....++..+|.+|...|++++|+.+|+++
T Consensus 207 -----~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 207 -----NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--------RPEDYSLWNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp -----SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 222 4678899999999999999999999999998 7777889999999999999999999999999
Q ss_pred HHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCC-----CcHHHHHHHHHHHHHHcCCHH
Q 005139 501 LRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ-----STVAGIEAQMGVMYYMLGNYS 575 (712)
Q Consensus 501 l~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~~la~~~~~~g~~~ 575 (712)
+.+ .|....++..+|.+|...|++++|+.+|++++.+.+...+.. .....++..++.++...|+.+
T Consensus 274 l~~---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 344 (365)
T 4eqf_A 274 LEI---------QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPE 344 (365)
T ss_dssp HHH---------CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHH
T ss_pred Hhc---------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHH
Confidence 998 344578899999999999999999999999999998764421 123468899999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 005139 576 DSYDSFKNAISKLR 589 (712)
Q Consensus 576 ~A~~~~~~al~~~~ 589 (712)
.|..+..+.+..++
T Consensus 345 ~a~~~~~~~l~~~~ 358 (365)
T 4eqf_A 345 LFQAANLGDLDVLL 358 (365)
T ss_dssp HHHHHHTTCCGGGT
T ss_pred HHHHHHHhhHHHHH
Confidence 99988887666543
No 31
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.93 E-value=1.7e-22 Score=212.81 Aligned_cols=340 Identities=13% Similarity=0.067 Sum_probs=260.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--HHHcCCHhHHH---------HHHHHhhchhh
Q 005139 228 ARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAI--YCSLGQYNEAI---------PVLEQSIEIPV 296 (712)
Q Consensus 228 a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~--~~~~g~~~~A~---------~~~~~al~~~~ 296 (712)
-..++..++ +++|..+++++...+.... .+.... .++.+-.. ....+.+..+. ..++..-....
T Consensus 19 wy~~i~~~~-~~~A~~l~~~i~~~~~~~~---~~~~~~-~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~ 93 (378)
T 3q15_A 19 WYKMIRQFS-VPDAEILKAEVEQDIQQME---EDQDLL-IYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQK 93 (378)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHHHGGGBC---CCHHHH-HHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGH
T ss_pred HHHHHHHcC-HHHHHHHHHHHHHHHHHhc---ccHHHH-HHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCC
Confidence 334466765 9999999999877654432 233333 33332221 22233433333 44444322211
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 005139 297 IEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMA 376 (712)
Q Consensus 297 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 376 (712)
+.........++.+|..+...|++++|+.+|++++.+.... .+.+..+.++..+|.+|...|+++.|+.+++++
T Consensus 94 ----~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a 167 (378)
T 3q15_A 94 ----KLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167 (378)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----CCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 11222234467889999999999999999999999986553 334678899999999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005139 377 LDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ 456 (712)
Q Consensus 377 l~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 456 (712)
+.+.+.... .....+.++..+|.+|...|++++|+.+|.+++.+....++....+.++.++|.+|..+|++++|+.+|+
T Consensus 168 l~~~~~~~~-~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 168 LDIYQNHPL-YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHTSTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHhCCC-chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999987653 2346688999999999999999999999999999998888888889999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHH
Q 005139 457 KALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQA 536 (712)
Q Consensus 457 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 536 (712)
+++.+.+... +|....++..+|.++...|++++|+.++++++.+..... .+.....+..++.++...++.
T Consensus 247 ~al~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~l~~ly~~~~~~--- 316 (378)
T 3q15_A 247 KAAKVSREKV---PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARS----HKFYKELFLFLQAVYKETVDE--- 316 (378)
T ss_dssp HHHHHHHHHC---GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTC----CSCHHHHHHHHHHHHSSSCCH---
T ss_pred HHHHHHHhhC---ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHhCCCcH---
Confidence 9999988764 666689999999999999999999999999999976632 233444578889999988883
Q ss_pred HHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 005139 537 IKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI 591 (712)
Q Consensus 537 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 591 (712)
..+.+++...... +..+....++..+|.+|...|++++|..+|++++.+.+++
T Consensus 317 -~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~ 369 (378)
T 3q15_A 317 -RKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDI 369 (378)
T ss_dssp -HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3333444443333 3344556778899999999999999999999999987654
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.92 E-value=1.7e-23 Score=215.25 Aligned_cols=289 Identities=14% Similarity=0.114 Sum_probs=238.3
Q ss_pred cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 005139 302 EHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHK 381 (712)
Q Consensus 302 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 381 (712)
..+......++.+|..+...|++++|+.+|++++.. .|....++..+|.++...|++++|+.++++++.+.+
T Consensus 15 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 86 (327)
T 3cv0_A 15 NNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQA--------APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 86 (327)
T ss_dssp SCGGGGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ccchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 333333445889999999999999999999999987 577788999999999999999999999999998854
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH--------------HH-HHHHcC
Q 005139 382 DNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI--------------GD-TYLSLS 446 (712)
Q Consensus 382 ~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l--------------a~-~~~~~g 446 (712)
.. ..++..+|.++...|++++|+.++++++.... .....+..+ +. ++...|
T Consensus 87 ~~--------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (327)
T 3cv0_A 87 KD--------IAVHAALAVSHTNEHNANAALASLRAWLLSQP------QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPN 152 (327)
T ss_dssp TC--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST------TTTTC--------------------CCTTSHH
T ss_pred CC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcc
Confidence 32 34788999999999999999999999985322 212222222 44 588899
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHH
Q 005139 447 RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSI 526 (712)
Q Consensus 447 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~ 526 (712)
++++|+.++++++.. .|....++..+|.++...|++++|+.++++++.+. +....++..+|.+
T Consensus 153 ~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~ 215 (327)
T 3cv0_A 153 EYRECRTLLHAALEM--------NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR---------PDDAQLWNKLGAT 215 (327)
T ss_dssp HHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---------CCcHHHHHHHHHH
Confidence 999999999999988 66678899999999999999999999999999983 3346789999999
Q ss_pred HHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCC----hHHHHH
Q 005139 527 YESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKS----AFFGVA 602 (712)
Q Consensus 527 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~ 602 (712)
+...|++++|+.+|++++...+.. ..++..+|.++...|++++|+.+|++++.+......... .....+
T Consensus 216 ~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 288 (327)
T 3cv0_A 216 LANGNRPQEALDAYNRALDINPGY-------VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSM 288 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHH
Confidence 999999999999999999875543 457889999999999999999999999987543221111 114678
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Q 005139 603 LNQMGLACVQRYSINEAVELFEEARSILEQECGP 636 (712)
Q Consensus 603 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 636 (712)
+..+|.++...|++++|..++++++..+...++.
T Consensus 289 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 322 (327)
T 3cv0_A 289 WDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFGL 322 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHTTS
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcchhhhH
Confidence 9999999999999999999999999987776553
No 33
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.92 E-value=1.2e-21 Score=206.34 Aligned_cols=338 Identities=13% Similarity=0.051 Sum_probs=255.0
Q ss_pred HHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHH--HHHcCCHHHHH---------HHHHHHHHHHHHHhC
Q 005139 275 YCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDT--YAMLGQLENSL---------MCYTTGLEVQKQVLG 343 (712)
Q Consensus 275 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~--~~~~g~~~~A~---------~~~~~al~~~~~~~~ 343 (712)
+...+++++|..+++++......... +. .+..++.+-.. ....+.+..+. ..+++.-......
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~--~~--~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~-- 95 (378)
T 3q15_A 22 MIRQFSVPDAEILKAEVEQDIQQMEE--DQ--DLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKL-- 95 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHGGGBCC--CH--HHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHH--
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHhcc--cH--HHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCC--
Confidence 47889999999999987665433221 21 12223333221 11122222222 3333321111110
Q ss_pred CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139 344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMI 423 (712)
Q Consensus 344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 423 (712)
++......++.+|..+...|++++|+.+|++++.+..... +.+..+.++..+|.+|...|++++|+.++.+++.+..
T Consensus 96 -~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~ 172 (378)
T 3q15_A 96 -TGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVS--DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQ 172 (378)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -ccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCC--ChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 0112334677899999999999999999999999987765 3467788999999999999999999999999999988
Q ss_pred hCCC-ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005139 424 ANDQ-DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR 502 (712)
Q Consensus 424 ~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 502 (712)
...+ .+..+.++.++|.+|..+|++++|+.+|++++++.+... +.+..+.++.++|.+|..+|++++|+.+|++++.
T Consensus 173 ~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 173 NHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ--NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp TSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7765 457889999999999999999999999999999988764 3456788999999999999999999999999999
Q ss_pred HHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005139 503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK 582 (712)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 582 (712)
+..... .+..+.++..+|.++...|++++|+.++++++.+.... +..... ..+..++.++...++. ..+.
T Consensus 251 ~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~-~~~~~l~~ly~~~~~~----~~~~ 320 (378)
T 3q15_A 251 VSREKV----PDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR-SHKFYK-ELFLFLQAVYKETVDE----RKIH 320 (378)
T ss_dssp HHHHHC----GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT-CCSCHH-HHHHHHHHHHSSSCCH----HHHH
T ss_pred HHHhhC----ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-CCHHHH-HHHHHHHHHHhCCCcH----HHHH
Confidence 877532 45558899999999999999999999999999997765 333333 3567888888888883 3344
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 005139 583 NAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG 635 (712)
Q Consensus 583 ~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 635 (712)
+++..++... ..+....++..+|.+|...|++++|..+|++++++.+++..
T Consensus 321 ~al~~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~ 371 (378)
T 3q15_A 321 DLLSYFEKKN--LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILK 371 (378)
T ss_dssp HHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC--ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence 4444444422 23455678889999999999999999999999999776643
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.92 E-value=4.1e-23 Score=212.32 Aligned_cols=290 Identities=14% Similarity=0.097 Sum_probs=237.6
Q ss_pred HHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 005139 264 LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLG 343 (712)
Q Consensus 264 ~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 343 (712)
....++.+|..+...|++++|+.+|++++... +..+ .++..+|.++...|++++|+.+|++++.+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------ 84 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-----PERE----EAWRSLGLTQAENEKDGLAIIALNHARML------ 84 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc------
Confidence 34567789999999999999999999999875 3333 35889999999999999999999999998
Q ss_pred CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHH-----HHHHHHHH-HH-HHHHcCCHHHHHHHHH
Q 005139 344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLE-----EAADRRLM-GL-ICETKGDHEAALEHLV 416 (712)
Q Consensus 344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-----~a~~~~~l-a~-~~~~~g~~~~A~~~~~ 416 (712)
.|....++..+|.++...|++++|+.++++++...+......... .......+ +. ++...|++++|+.+++
T Consensus 85 --~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 162 (327)
T 3cv0_A 85 --DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLH 162 (327)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHH
T ss_pred --CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHH
Confidence 577788999999999999999999999999998766554321000 00001122 44 5888999999999999
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 005139 417 LASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSY 496 (712)
Q Consensus 417 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 496 (712)
+++.. .+....++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+.+
T Consensus 163 ~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~ 228 (327)
T 3cv0_A 163 AALEM------NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--------RPDDAQLWNKLGATLANGNRPQEALDA 228 (327)
T ss_dssp HHHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhh------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99853 3345678999999999999999999999999998 677788999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCc-----HHHHHHHHHHHHHHc
Q 005139 497 CENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQST-----VAGIEAQMGVMYYML 571 (712)
Q Consensus 497 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~~~~~~~la~~~~~~ 571 (712)
|++++.+. +....++..+|.++...|++++|+.+|++++.+.+...+.... ...++..+|.++...
T Consensus 229 ~~~a~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (327)
T 3cv0_A 229 YNRALDIN---------PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVM 299 (327)
T ss_dssp HHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcC---------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhc
Confidence 99999983 3346789999999999999999999999999998764222211 567899999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhCC
Q 005139 572 GNYSDSYDSFKNAISKLRAIGE 593 (712)
Q Consensus 572 g~~~~A~~~~~~al~~~~~~~~ 593 (712)
|++++|..++++++..+....+
T Consensus 300 g~~~~A~~~~~~~l~~~~~~~~ 321 (327)
T 3cv0_A 300 NRPDLVELTYAQNVEPFAKEFG 321 (327)
T ss_dssp TCHHHHHHHTTCCSHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhcchhhh
Confidence 9999999999999988765543
No 35
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.91 E-value=3.5e-22 Score=203.72 Aligned_cols=280 Identities=19% Similarity=0.175 Sum_probs=229.7
Q ss_pred hCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139 342 LGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMT 421 (712)
Q Consensus 342 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 421 (712)
.+.++|....++..+|.++...|++++|+.++++++.+.....++..+..+.++..+|.++...|++++|+.+|++++..
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 98 (311)
T 3nf1_A 19 GGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI 98 (311)
T ss_dssp SCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 35667899999999999999999999999999999999888766667888889999999999999999999999999988
Q ss_pred HHhC--CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005139 422 MIAN--DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCEN 499 (712)
Q Consensus 422 ~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 499 (712)
.... .+.+....++..+|.+|...|++++|+.++++++.+.....+.+++....++..+|.++...|++++|+.+|++
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 178 (311)
T 3nf1_A 99 REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQR 178 (311)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7665 67788899999999999999999999999999999998887777899999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCC----CC-CC---cHHHHHHHHHHHHHHc
Q 005139 500 ALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP----GQ-QS---TVAGIEAQMGVMYYML 571 (712)
Q Consensus 500 al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~-~~---~~~~~~~~la~~~~~~ 571 (712)
++.+..... +...+....++..+|.+|...|++++|+.++++++.+.+... .. .. .....+..++..+...
T Consensus 179 a~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (311)
T 3nf1_A 179 ALEIYQTKL-GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDG 257 (311)
T ss_dssp HHHHHHHTS-CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhH
Confidence 999987753 345677889999999999999999999999999999865420 11 01 1223344455556666
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 005139 572 GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSIL 630 (712)
Q Consensus 572 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 630 (712)
+.+.+|...+.++.. ..+....++..+|.+|...|++++|+.+|++++++.
T Consensus 258 ~~~~~a~~~~~~~~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 258 TSFGEYGGWYKACKV--------DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp CCSCCCC-----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCC--------CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 777777777777765 245677899999999999999999999999999983
No 36
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.91 E-value=5e-22 Score=202.55 Aligned_cols=286 Identities=20% Similarity=0.244 Sum_probs=233.2
Q ss_pred cccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHH
Q 005139 209 DVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVL 288 (712)
Q Consensus 209 ~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~ 288 (712)
.....+.++|..+.++..+|..++..|+ +++|+.++++++.+.+... +...+..+.++..+|.+|...|++++|+.+|
T Consensus 15 ~~q~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 92 (311)
T 3nf1_A 15 YFQGGGYEIPARLRTLHNLVIQYASQGR-YEVAVPLCKQALEDLEKTS-GHDHPDVATMLNILALVYRDQNKYKDAANLL 92 (311)
T ss_dssp SCSSSCTTSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHH-CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccCCCCcchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3445677889999999999999999997 9999999999999987764 3345788999999999999999999999999
Q ss_pred HHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHH
Q 005139 289 EQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSE 368 (712)
Q Consensus 289 ~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 368 (712)
++++.+.....+.+.+. ...++..+|.+|...|++++|+.+|++++.+.....+.+++....++..+|.++...|++++
T Consensus 93 ~~al~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 171 (311)
T 3nf1_A 93 NDALAIREKTLGKDHPA-VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEE 171 (311)
T ss_dssp HHHHHHHHHHHCTTCHH-HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHhCCCChH-HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHH
Confidence 99999876655444443 45679999999999999999999999999999888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC---CC------hhHHHHHHHHH
Q 005139 369 AQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND---QD------AEVASVDCSIG 439 (712)
Q Consensus 369 A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~------~~~~~~~~~la 439 (712)
|+.++++++.+.........+....++..+|.++...|++++|+.+|++++....... .. ......+..++
T Consensus 172 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (311)
T 3nf1_A 172 VEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECK 251 (311)
T ss_dssp HHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhc
Confidence 9999999999988876666788888999999999999999999999999997654311 11 12334445555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 005139 440 DTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (712)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (712)
..+...+.+.+|...+.+++.. ++....++..+|.+|...|++++|+.+|++++++.+
T Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 252 GKQKDGTSFGEYGGWYKACKVD--------SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp ------CCSCCCC-----------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred CchhhHHHHHHHHHHHhhcCCC--------CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 6666677777888888888775 899999999999999999999999999999999854
No 37
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.90 E-value=1.5e-22 Score=202.43 Aligned_cols=261 Identities=9% Similarity=-0.012 Sum_probs=219.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChh
Q 005139 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE 430 (712)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 430 (712)
..++.+|.+++..|++++|+.+|+++++..+.... ++..+|.++...|++++|+.+|++++. ...+...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~--------~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~ 72 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPY--------IYNRRAVCYYELAKYDLAQKDIETYFS---KVNATKA 72 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCST--------THHHHHHHHHHTTCHHHHHHHHHHHHT---TSCTTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH--------HHHHHHHHHHHHhhHHHHHHHHHHHHh---ccCchhH
Confidence 46788999999999999999999999988765432 688999999999999999999999985 2233344
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 005139 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG 510 (712)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 510 (712)
...++..+|.++...|++++|+.+|++++++ .|....++..+|.+|...|++++|+.+|++++.+
T Consensus 73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------- 137 (272)
T 3u4t_A 73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDR--------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP------- 137 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-------
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-------
Confidence 4778999999999999999999999999998 7777789999999999999999999999999887
Q ss_pred CCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHH
Q 005139 511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN---YSDSYDSFKNAISK 587 (712)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~ 587 (712)
.|....++..+|......+++++|+.+|++++++.+.. ..++..+|.++...|+ +++|+..|++++++
T Consensus 138 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 138 --TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI-------YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp --SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-------hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 33457789999955555669999999999999986654 4678899999999999 99999999999998
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 005139 588 LRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA 654 (712)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~ 654 (712)
.....+........++..+|.+|...|++++|+.+|++++++ +|+...++..++.+...
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--------DPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHC-----
T ss_pred HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CccHHHHHHHhhhhhcc
Confidence 765443322335678999999999999999999999999999 88888888888776544
No 38
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.90 E-value=2.5e-20 Score=195.72 Aligned_cols=310 Identities=10% Similarity=-0.017 Sum_probs=250.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCh-hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Q 005139 307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDP-RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385 (712)
Q Consensus 307 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 385 (712)
...++..+|.++...|++++|+.++++++... ...++ ....++..+|.++...|++++|+.++++++.+.+....
T Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 88 (373)
T 1hz4_A 13 HAEFNALRAQVAINDGNPDEAERLAKLALEEL----PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV 88 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC----CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC----CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc
Confidence 45567889999999999999999999999863 22222 35567889999999999999999999999999988753
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139 386 PASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD--AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK 463 (712)
Q Consensus 386 ~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 463 (712)
....+.++..+|.++...|++++|+.++++++......+.. +....++.++|.++...|++++|+.++++++.+..
T Consensus 89 --~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 166 (373)
T 1hz4_A 89 --WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 166 (373)
T ss_dssp --HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 34456678899999999999999999999999888766554 67788899999999999999999999999999865
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 005139 464 TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA 543 (712)
Q Consensus 464 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 543 (712)
... .+....++..+|.++...|++++|..++++++.+..... ............++.++...|++++|..+++++
T Consensus 167 ~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 241 (373)
T 1hz4_A 167 SYQ---PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK--YHSDWISNANKVRVIYWQMTGDKAAAANWLRHT 241 (373)
T ss_dssp TSC---GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccC---cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC--cchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 542 233567889999999999999999999999999876531 111112222234566788999999999999998
Q ss_pred HHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 005139 544 LKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELF 623 (712)
Q Consensus 544 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 623 (712)
+...+ +........+..+|.++...|++++|...+++++......+. ......++..+|.++...|++++|..+|
T Consensus 242 ~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~l 316 (373)
T 1hz4_A 242 AKPEF---ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRL--MSDLNRNLLLLNQLYWQAGRKSDAQRVL 316 (373)
T ss_dssp CCCCC---TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCCCC---CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc--hhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 75321 111222335678999999999999999999999998877553 2344568889999999999999999999
Q ss_pred HHHHHHHHH
Q 005139 624 EEARSILEQ 632 (712)
Q Consensus 624 ~~al~~~~~ 632 (712)
++++.+...
T Consensus 317 ~~al~~~~~ 325 (373)
T 1hz4_A 317 LDALKLANR 325 (373)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcc
Confidence 999998654
No 39
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.90 E-value=1.3e-20 Score=198.02 Aligned_cols=313 Identities=11% Similarity=0.004 Sum_probs=251.7
Q ss_pred HHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 005139 264 LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLG 343 (712)
Q Consensus 264 ~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 343 (712)
...++..+|.++...|++++|+.++++++...+ ...+.....++..+|.++...|++++|+.++++++.+.+..
T Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-- 86 (373)
T 1hz4_A 13 HAEFNALRAQVAINDGNPDEAERLAKLALEELP----PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH-- 86 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC----TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC----CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc--
Confidence 356677889999999999999999999998752 22233345578999999999999999999999999998763
Q ss_pred CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139 344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMI 423 (712)
Q Consensus 344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 423 (712)
.+......++..+|.++...|++++|+.++++++.+.+....+..+....++..+|.++...|++++|+.++.+++....
T Consensus 87 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 166 (373)
T 1hz4_A 87 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 166 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 12234566789999999999999999999999999998877654556677889999999999999999999999998766
Q ss_pred hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH--HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005139 424 ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVAS--VFVRLADMYNRTGKLRESKSYCENAL 501 (712)
Q Consensus 424 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al 501 (712)
..+.. ....++..+|.++...|++++|..++++++.+..... .+.... ....++.++...|++++|..++.+++
T Consensus 167 ~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 242 (373)
T 1hz4_A 167 SYQPQ-QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK---YHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 242 (373)
T ss_dssp TSCGG-GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccC---cchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 54433 3567889999999999999999999999998865432 221122 22345566889999999999999987
Q ss_pred HHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHH
Q 005139 502 RIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSF 581 (712)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 581 (712)
.... + ........+..++.++...|++++|...+++++...+.. +.......++..+|.++...|++++|...+
T Consensus 243 ~~~~----~-~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~l 316 (373)
T 1hz4_A 243 KPEF----A-NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL-RLMSDLNRNLLLLNQLYWQAGRKSDAQRVL 316 (373)
T ss_dssp CCCC----T-TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCCC----C-cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5421 1 112223457889999999999999999999999998875 444445568889999999999999999999
Q ss_pred HHHHHHHHHhC
Q 005139 582 KNAISKLRAIG 592 (712)
Q Consensus 582 ~~al~~~~~~~ 592 (712)
++++.+....+
T Consensus 317 ~~al~~~~~~g 327 (373)
T 1hz4_A 317 LDALKLANRTG 327 (373)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHhcccc
Confidence 99999877654
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.4e-21 Score=191.68 Aligned_cols=253 Identities=14% Similarity=0.145 Sum_probs=214.1
Q ss_pred HHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 005139 263 ELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVL 342 (712)
Q Consensus 263 ~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 342 (712)
..+..+..+|.+++..|++++|+.+|++++... .. ..++..+|.++...|++++|+.+|++++.+....
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~------~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~- 71 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH------KD----ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM- 71 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------CC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh------cc----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc-
Confidence 457789999999999999999999999999874 12 2358999999999999999999999999986552
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139 343 GETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTM 422 (712)
Q Consensus 343 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 422 (712)
..+.+....++..+|.++...|++++|+.++++++.+.+. +.++...|++++|+..+.+++.
T Consensus 72 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----------------~~~~~~~~~~~~a~~~~~~~~~-- 133 (258)
T 3uq3_A 72 RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT----------------ADILTKLRNAEKELKKAEAEAY-- 133 (258)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----------------HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch----------------hHHHHHHhHHHHHHHHHHHHHH--
Confidence 1122344789999999999999999999999999987532 3567778889999999999873
Q ss_pred HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005139 423 IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR 502 (712)
Q Consensus 423 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 502 (712)
..+....++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++.
T Consensus 134 ----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 134 ----VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp ----CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 57888899999999999999999999999999998 677788999999999999999999999999999
Q ss_pred HHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHH
Q 005139 503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGV 566 (712)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~ 566 (712)
+ .|....++..+|.++...|++++|+.+|++++++.+.. +..+....++..++.
T Consensus 202 ~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 202 K---------DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEV-NNGSSAREIDQLYYK 255 (258)
T ss_dssp H---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-HTTTTHHHHHHHHHH
T ss_pred h---------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhh-cCCCchHHHHHHHHH
Confidence 8 33457789999999999999999999999999998654 232333344444443
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=4e-21 Score=190.03 Aligned_cols=254 Identities=17% Similarity=0.117 Sum_probs=217.1
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 005139 347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND 426 (712)
Q Consensus 347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 426 (712)
+..+.++..+|.+++..|++++|+.+|++++... .. ..++..+|.++...|++++|+.++.+++.......
T Consensus 2 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~--------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 72 (258)
T 3uq3_A 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KD--------ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR 72 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CC--------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-cc--------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc
Confidence 3467889999999999999999999999999886 22 24789999999999999999999999998776543
Q ss_pred -CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 005139 427 -QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (712)
Q Consensus 427 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (712)
..+....++..+|.++...|++++|+.+|++++.+ .+. +.++...|++++|+..+++++..
T Consensus 73 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~--------~~~~~~~~~~~~a~~~~~~~~~~-- 134 (258)
T 3uq3_A 73 ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--------HRT--------ADILTKLRNAEKELKKAEAEAYV-- 134 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCC--------HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------Cch--------hHHHHHHhHHHHHHHHHHHHHHc--
Confidence 33445789999999999999999999999999997 433 45677888999999999999886
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005139 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585 (712)
Q Consensus 506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 585 (712)
.+....++..+|.++...|++++|+.+|++++...+.. ..++..+|.++...|++++|+.+|++++
T Consensus 135 -------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 135 -------NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED-------ARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp -------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc-------HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 56678899999999999999999999999999986543 4688999999999999999999999999
Q ss_pred HHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 005139 586 SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT 651 (712)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~ 651 (712)
.+. +....++..+|.++...|++++|+.+|++++++...... .|....++..|+.+
T Consensus 201 ~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 201 EKD--------PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNN--GSSAREIDQLYYKA 256 (258)
T ss_dssp HHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT--TTTHHHHHHHHHHT
T ss_pred HhC--------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcC--CCchHHHHHHHHHh
Confidence 862 223578999999999999999999999999999544432 37777777777654
No 42
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.89 E-value=1.7e-21 Score=195.50 Aligned_cols=269 Identities=17% Similarity=0.133 Sum_probs=222.3
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 005139 318 YAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRL 397 (712)
Q Consensus 318 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~ 397 (712)
....|++++|+.+|++++++..+..+.++|....++..+|.++...|++++|+.++++++.+.....+...+..+.++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 34578999999999999999999988888999999999999999999999999999999999988766677888899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 005139 398 MGLICETKGDHEAALEHLVLASMTMIAN--DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVAS 475 (712)
Q Consensus 398 la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 475 (712)
+|.++...|++++|+.+|.+++...... .+.+....++..+|.+|...|++++|+.++++++.+.....+++.+....
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 9999999999999999999999877653 44688899999999999999999999999999999999988888999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCC
Q 005139 476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS 555 (712)
Q Consensus 476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 555 (712)
++..+|.+|...|++++|+.+|++++.+......+...+.....+..++..+...+....+. .+..+...........+
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 249 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSA-PYGEYGSWYKACKVDSP 249 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHH-HHHHHHHHHHhcCCCCH
Confidence 99999999999999999999999999986543222223344456667777776655554443 35555555555544556
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139 556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587 (712)
Q Consensus 556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 587 (712)
....++..+|.+|...|++++|+.+|++++++
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77788999999999999999999999999864
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.89 E-value=6.3e-22 Score=206.28 Aligned_cols=255 Identities=8% Similarity=-0.000 Sum_probs=222.2
Q ss_pred ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHh
Q 005139 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGD-HEAALEHLVLASMTMIA 424 (712)
Q Consensus 346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~ 424 (712)
+|....++..+|.++...|++++|+..|++++.+.+.. ..+|+.+|.++..+|+ +++|+.+|++++.
T Consensus 93 ~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~--------~~a~~~~g~~l~~~g~d~~eAl~~~~~al~---- 160 (382)
T 2h6f_A 93 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAAN--------YTVWHFRRVLLKSLQKDLHEEMNYITAIIE---- 160 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH----
T ss_pred ChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccC--------HHHHHHHHHHHHHcccCHHHHHHHHHHHHH----
Confidence 68888999999999999999999999999999987654 4589999999999997 9999999999985
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139 425 NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY 504 (712)
Q Consensus 425 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 504 (712)
..|....+|+++|.++..+|++++|+..|++++.+ .|....+|.++|.++..+|++++|+.+|++++++
T Consensus 161 --l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~l--------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l- 229 (382)
T 2h6f_A 161 --EQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE- 229 (382)
T ss_dssp --HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-
T ss_pred --HCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-
Confidence 45667889999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred hcCCCCCCChhHHHHHHHHHHHHHH-cccHHHH-----HHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcC--CHHH
Q 005139 505 EKPVPGVPPEEIASGLTDVSSIYES-MNELEQA-----IKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG--NYSD 576 (712)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~ 576 (712)
.|....+|+++|.++.. .|.+++| +.+|++++.+.+.. ..+|..+|.++...| ++++
T Consensus 230 --------~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~-------~~a~~~l~~ll~~~g~~~~~~ 294 (382)
T 2h6f_A 230 --------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN-------ESAWNYLKGILQDRGLSKYPN 294 (382)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHTTTCGGGCHH
T ss_pred --------CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHccCccchHH
Confidence 55568899999999999 5555777 59999999987665 468899999999988 6889
Q ss_pred HHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhC---------CHHHHHHHHHHH-HHHHHHhcCCCChhhHHHHH
Q 005139 577 SYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY---------SINEAVELFEEA-RSILEQECGPYHPDTLGVYS 646 (712)
Q Consensus 577 A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g---------~~~~A~~~~~~a-l~~~~~~~~~~~p~~~~~~~ 646 (712)
|+..+.++ + . . +....++..+|.+|..+| .+++|+.+|+++ +++ +|.....|.
T Consensus 295 a~~~~~~~-~----~-~---p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~--------DP~r~~~w~ 357 (382)
T 2h6f_A 295 LLNQLLDL-Q----P-S---HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK--------DTIRKEYWR 357 (382)
T ss_dssp HHHHHHHH-T----T-T---CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT--------CGGGHHHHH
T ss_pred HHHHHHHh-c----c-C---CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh--------CchhHHHHH
Confidence 88877665 2 1 1 223478899999999985 258999999998 777 999999999
Q ss_pred HHHHHHHHc
Q 005139 647 NLAGTYDAI 655 (712)
Q Consensus 647 ~La~~~~~~ 655 (712)
.++..+..+
T Consensus 358 ~~~~~l~~~ 366 (382)
T 2h6f_A 358 YIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888754
No 44
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.89 E-value=8.1e-21 Score=190.45 Aligned_cols=257 Identities=18% Similarity=0.245 Sum_probs=221.9
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHH
Q 005139 442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT 521 (712)
Q Consensus 442 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 521 (712)
....|++++|+.+|+++++++.+..+.+++..+.++..+|.+|...|++++|+.+|++++.+..... +.+++....++.
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~ 89 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTL-GKDHPAVAATLN 89 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CTTCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHc-CCcchHHHHHHH
Confidence 3457999999999999999999998888899999999999999999999999999999999987653 355678899999
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHH
Q 005139 522 DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQ-STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFG 600 (712)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 600 (712)
.+|.+|...|++++|+.+|++++.+.....+.. +....++..+|.+|...|++++|+.+|++++.+.........+...
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 999999999999999999999999987664443 4667889999999999999999999999999999888777677788
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh-cCCCChhhHHHHHHHHHHHHHccc-------------hhhhCCCCh
Q 005139 601 VALNQMGLACVQRYSINEAVELFEEARSILEQE-CGPYHPDTLGVYSNLAGTYDAIGR-------------EEKLGTANP 666 (712)
Q Consensus 601 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~p~~~~~~~~La~~~~~~g~-------------~~~l~~~~p 666 (712)
.++..+|.+|..+|++++|+.+|++++.+.... .+..++.....+..++..+...+. .+.+...+|
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSP 249 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCH
Confidence 999999999999999999999999999986554 344566666677777777665554 444556789
Q ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Q 005139 667 DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN 700 (712)
Q Consensus 667 ~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~ 700 (712)
....++..+|.+|..+|++++|. ..|+++++..
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~ 282 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAH-TLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhh
Confidence 99999999999999999999999 9999998753
No 45
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.88 E-value=3.4e-21 Score=192.50 Aligned_cols=248 Identities=15% Similarity=0.078 Sum_probs=210.2
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Q 005139 266 MCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET 345 (712)
Q Consensus 266 ~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 345 (712)
..++.+|.+++..|++++|+.+|+++++.. +..+. ++..+|.+|...|++++|+.+|++++.. +.+
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~----~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~ 69 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-----YNSPY----IYNRRAVCYYELAKYDLAQKDIETYFSK-----VNA 69 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-----CCCST----THHHHHHHHHHTTCHHHHHHHHHHHHTT-----SCT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CCcHH----HHHHHHHHHHHHhhHHHHHHHHHHHHhc-----cCc
Confidence 356778999999999999999999999876 44443 4889999999999999999999999873 122
Q ss_pred ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 005139 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN 425 (712)
Q Consensus 346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 425 (712)
......++..+|.++...|++++|+.++++++.+.+... .++..+|.++...|++++|+.+|++++
T Consensus 70 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~--------~~~~~l~~~~~~~~~~~~A~~~~~~al------ 135 (272)
T 3u4t_A 70 TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL--------DMYGQIGSYFYNKGNFPLAIQYMEKQI------ 135 (272)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT--------HHHHHHHHHHHHTTCHHHHHHHHGGGC------
T ss_pred hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccH--------HHHHHHHHHHHHccCHHHHHHHHHHHh------
Confidence 233477899999999999999999999999999876543 379999999999999999999999987
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH
Q 005139 426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK---LRESKSYCENALR 502 (712)
Q Consensus 426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~ 502 (712)
...|....++..+|...+..+++++|+.+|++++++ .|....++..+|.++...|+ +++|+.+|+++++
T Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 136 RPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--------KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp CSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 346667788999995555567999999999999998 77778899999999999999 9999999999999
Q ss_pred HHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139 503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (712)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (712)
+........ ......++..+|.+|...|++++|+.+|++++++.+..
T Consensus 208 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 254 (272)
T 3u4t_A 208 VCAPGGAKY-KDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTN 254 (272)
T ss_dssp HHGGGGGGG-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHhcccccc-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccH
Confidence 986531010 23356889999999999999999999999999987654
No 46
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=1.2e-19 Score=200.15 Aligned_cols=415 Identities=13% Similarity=0.012 Sum_probs=295.6
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhch
Q 005139 215 LDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI 294 (712)
Q Consensus 215 ~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~ 294 (712)
..+|.....+..++.. ...|+ +++|...|++++..+ |.....+..++..+...|++++|+.+|++++..
T Consensus 7 ~~~P~~~~~w~~l~~~-~~~~~-~~~a~~~~e~al~~~---------P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~ 75 (530)
T 2ooe_A 7 EENPYDLDAWSILIRE-AQNQP-IDKARKTYERLVAQF---------PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK 75 (530)
T ss_dssp HHCTTCHHHHHHHHHH-HHSSC-HHHHHHHHHHHHTTC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred hhCCCCHHHHHHHHHH-HHhCC-HHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 4578889999999984 77776 999999999999764 455778888999999999999999999999987
Q ss_pred hhhhhcccchHHHHHHHHHHHH-HHHHcCCHHHHHH----HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH-------
Q 005139 295 PVIEEGQEHALAKFAGHMQLGD-TYAMLGQLENSLM----CYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ------- 362 (712)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~lg~-~~~~~g~~~~A~~----~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~------- 362 (712)
. | +. .+|..++. +....|+++.|.. .|++++.. .|. ++....+|...+.+...
T Consensus 76 ~-----p-~~----~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~----~g~-~~~~~~~w~~~~~~~~~~~~~~~~ 140 (530)
T 2ooe_A 76 V-----L-HI----DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDK----IGM-EIMSYQIWVDYINFLKGVEAVGSY 140 (530)
T ss_dssp C-----C-CH----HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHH----TTT-STTCHHHHHHHHHHHHHSCCCSST
T ss_pred C-----C-Ch----HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHH----CCC-CcccHHHHHHHHHHHhcCCCcccH
Confidence 5 3 22 23666664 4456788887776 55555543 232 34445666666666554
Q ss_pred --hCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-------------HHHcCCHHHHHHHHHHHHHHHHhCCC
Q 005139 363 --ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLI-------------CETKGDHEAALEHLVLASMTMIANDQ 427 (712)
Q Consensus 363 --~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~-------------~~~~g~~~~A~~~~~~al~~~~~~~~ 427 (712)
.|+++.|..+|++++.. +.. .. ...+...... ....+++..|...+............
T Consensus 141 ~~~~~~~~a~~~y~~al~~-P~~----~~--~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~ 213 (530)
T 2ooe_A 141 AENQRITAVRRVYQRGCVN-PMI----NI--EQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDR 213 (530)
T ss_dssp THHHHHHHHHHHHHHHTTS-CCT----TH--HHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHhHHHHHHHHHHHHHhc-hhh----hH--HHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 78999999999999972 211 11 1122211111 11345677777766653322222211
Q ss_pred -----Chh-------HHHHHHHHHHHHHH----cCCH----HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-
Q 005139 428 -----DAE-------VASVDCSIGDTYLS----LSRY----DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR- 486 (712)
Q Consensus 428 -----~~~-------~~~~~~~la~~~~~----~g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~- 486 (712)
+|. ....+......... .++. ..++..|++++.. .|....+|..+|.++..
T Consensus 214 ~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--------~p~~~~~w~~~~~~~~~~ 285 (530)
T 2ooe_A 214 NAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQS 285 (530)
T ss_dssp SSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHh
Confidence 211 12333332222211 1233 4788899999998 67778899999999986
Q ss_pred ------cCCHH-------HHHHHHHHHHH-HHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCC
Q 005139 487 ------TGKLR-------ESKSYCENALR-IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG 552 (712)
Q Consensus 487 ------~g~~~-------~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 552 (712)
.|+++ +|+..|++++. + .|....++..+|.++...|++++|...|++++.+.+.
T Consensus 286 ~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~---------~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--- 353 (530)
T 2ooe_A 286 SKLLAEKGDMNNAKLFSDEAANIYERAISTL---------LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI--- 353 (530)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT---------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS---
T ss_pred chhhhhccchhhhhhhhHHHHHHHHHHHHHh---------CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc---
Confidence 79987 88888888886 4 3345778999999999999999999999999986322
Q ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHH
Q 005139 553 QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLA-CVQRYSINEAVELFEEARSILE 631 (712)
Q Consensus 553 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~~ 631 (712)
....+|..++.++.+.|++++|+.+|++|++.. + . ....+...+.+ +...|++++|..+|+++++.
T Consensus 354 ---~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~----~-~---~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~-- 420 (530)
T 2ooe_A 354 ---DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA----R-T---RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-- 420 (530)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT----T-C---CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--
T ss_pred ---CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc----C-C---chHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--
Confidence 122478899999999999999999999998741 1 1 12334444444 34689999999999999998
Q ss_pred HhcCCCChhhHHHHHHHHHHHHHccc--------hhhh--CCCChh-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Q 005139 632 QECGPYHPDTLGVYSNLAGTYDAIGR--------EEKL--GTANPD-VDDEKRRLAELLKEAGRVRSRKAQSLETLLDAN 700 (712)
Q Consensus 632 ~~~~~~~p~~~~~~~~La~~~~~~g~--------~~~l--~~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~ 700 (712)
.|+...++..++.++...|+ .+.+ .+.+|+ ....|.....+....|+.+.+. ..+.++++..
T Consensus 421 ------~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~-~~~~r~~~~~ 493 (530)
T 2ooe_A 421 ------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL-KVEKRRFTAF 493 (530)
T ss_dssp ------HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHH-HHHHHHHHHT
T ss_pred ------CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHC
Confidence 78888899999999999998 2222 233553 3457778888888999999999 9999999999
Q ss_pred cc
Q 005139 701 SR 702 (712)
Q Consensus 701 p~ 702 (712)
|+
T Consensus 494 p~ 495 (530)
T 2ooe_A 494 RE 495 (530)
T ss_dssp HH
T ss_pred ch
Confidence 96
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.87 E-value=5.1e-21 Score=199.40 Aligned_cols=234 Identities=11% Similarity=0.030 Sum_probs=209.2
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHh
Q 005139 427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK-LRESKSYCENALRIYE 505 (712)
Q Consensus 427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~ 505 (712)
..|....++..+|.++...|++++|+..|++++.+ +|....+|+.+|.++..+|+ +++|+.+|++++.+
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l-- 161 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE-- 161 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--
Confidence 46778899999999999999999999999999999 89999999999999999997 99999999999999
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005139 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585 (712)
Q Consensus 506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 585 (712)
.|....+|+++|.++..+|++++|+.+|++++.+.+.. ..+|.++|.++..+|++++|+.+|++++
T Consensus 162 -------~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~-------~~a~~~lg~~~~~~g~~~eAl~~~~~al 227 (382)
T 2h6f_A 162 -------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN-------YHAWQHRQWVIQEFKLWDNELQYVDQLL 227 (382)
T ss_dssp -------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred -------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC-------HHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 45568899999999999999999999999999987665 4789999999999999999999999999
Q ss_pred HHHHHhCCCCChHHHHHHHHHHHHHHH-hCCHHHH-----HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc--
Q 005139 586 SKLRAIGERKSAFFGVALNQMGLACVQ-RYSINEA-----VELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-- 657 (712)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-- 657 (712)
++ .+....+|+.+|.++.. .|.+++| +.+|++++.+ +|+...++++++.++...|.
T Consensus 228 ~l--------~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--------~P~~~~a~~~l~~ll~~~g~~~ 291 (382)
T 2h6f_A 228 KE--------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--------VPHNESAWNYLKGILQDRGLSK 291 (382)
T ss_dssp HH--------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTTTCGGG
T ss_pred Hh--------CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHccCccc
Confidence 97 23345899999999999 5655777 5999999999 99999999999999999883
Q ss_pred -------hhhhCCCChhHHHHHHHHHHHHHHhc--------c-HHHHHHHHHHHH-HHhccc
Q 005139 658 -------EEKLGTANPDVDDEKRRLAELLKEAG--------R-VRSRKAQSLETL-LDANSR 702 (712)
Q Consensus 658 -------~~~l~~~~p~~~~~~~~la~~~~~~g--------~-~~~A~~~~l~~~-l~~~p~ 702 (712)
...+ ..+|+...++..||.+|..+| + +++|+ +.|+++ ++.+|.
T Consensus 292 ~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~-~~~~~l~~~~DP~ 351 (382)
T 2h6f_A 292 YPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKAL-ELCEILAKEKDTI 351 (382)
T ss_dssp CHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHH-HHHHHHHHTTCGG
T ss_pred hHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHH-HHHHHHHHHhCch
Confidence 3444 778999999999999999985 3 58999 999999 898885
No 48
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.86 E-value=4.5e-21 Score=206.21 Aligned_cols=377 Identities=13% Similarity=0.110 Sum_probs=258.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCH---hHHHHHHHHhhchhhhhhcc
Q 005139 225 LKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQY---NEAIPVLEQSIEIPVIEEGQ 301 (712)
Q Consensus 225 ~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~ 301 (712)
..+|..++..|+ +++|+.+|+++.+. +. +.+++.||.+|...|++ ++|+.+|+++++.
T Consensus 7 ~~la~~~~~~g~-~~~A~~~~~~aa~~------g~-----~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~------- 67 (452)
T 3e4b_A 7 QRLANEALKRGD-TVTAQQNYQQLAEL------GY-----SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT------- 67 (452)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHH------TC-----CTGGGTCC--------------------------------
T ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHHC------CC-----HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-------
Confidence 557888999997 99999999999764 22 34677899999999999 9999999999854
Q ss_pred cchHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 005139 302 EHALAKFAGHMQLGDTYAMLG-----QLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMA 376 (712)
Q Consensus 302 ~~~~~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 376 (712)
++ .+++.||.++...+ ++++|+.+|+++++. .+ ..+++.||.+|...+...++...++..
T Consensus 68 -~~----~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~-------g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~ 132 (452)
T 3e4b_A 68 -SP----RAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN-------GE---GNTLIPLAMLYLQYPHSFPNVNAQQQI 132 (452)
T ss_dssp --------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT-------TC---SSCHHHHHHHHHHCGGGCTTCCHHHHH
T ss_pred -CH----HHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 12 24888999777766 889999999999874 12 238889999999888766665555554
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcC---CHHHHHH
Q 005139 377 LDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLS---RYDEAGF 453 (712)
Q Consensus 377 l~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~ 453 (712)
....+... ..+++.+|.+|...+.++++............. ..+. +++.+|.+|...| ++++|+.
T Consensus 133 ~~a~~~g~-------~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~--~~~~---a~~~Lg~~~~~~g~~~~~~~A~~ 200 (452)
T 3e4b_A 133 SQWQAAGY-------PEAGLAQVLLYRTQGTYDQHLDDVERICKAALN--TTDI---CYVELATVYQKKQQPEQQAELLK 200 (452)
T ss_dssp HHHHHHTC-------TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT--TCTT---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHCCC-------HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc--CCHH---HHHHHHHHHHHcCCcccHHHHHH
Confidence 44443332 237889999999999777666654433322222 2222 7899999999999 9999999
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHH-H-
Q 005139 454 AYQKALTAFKTNKGENHPAVASVFVRLADMYNRT----GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSI-Y- 527 (712)
Q Consensus 454 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~-~- 527 (712)
+|+++.+. .+..+..+++||.+|... +++++|+.+|+++. .. .+.++++||.+ +
T Consensus 201 ~~~~aa~~--------g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g---------~~~a~~~Lg~~~~~ 260 (452)
T 3e4b_A 201 QMEAGVSR--------GTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PG---------YPASWVSLAQLLYD 260 (452)
T ss_dssp HHHHHHHT--------TCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GG---------STHHHHHHHHHHHH
T ss_pred HHHHHHHC--------CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CC---------CHHHHHHHHHHHHh
Confidence 99999987 555567778999999765 79999999999987 22 35678999998 4
Q ss_pred -HHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHhCCCCChHHHH
Q 005139 528 -ESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG-----NYSDSYDSFKNAISKLRAIGERKSAFFGV 601 (712)
Q Consensus 528 -~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 601 (712)
...+++++|+.+|+++.+. + ...+++.||.+|. .| ++++|+.+|+++. . . ...
T Consensus 261 ~~~~~d~~~A~~~~~~Aa~~-----g----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~-------g---~~~ 319 (452)
T 3e4b_A 261 FPELGDVEQMMKYLDNGRAA-----D----QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G-------R---EVA 319 (452)
T ss_dssp SGGGCCHHHHHHHHHHHHHT-----T----CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T-------T---CHH
T ss_pred CCCCCCHHHHHHHHHHHHHC-----C----CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C-------C---CHH
Confidence 5689999999999999854 2 1468889999998 56 9999999999987 1 1 237
Q ss_pred HHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc-c---c--------hhhhCCCC
Q 005139 602 ALNQMGLACVQ----RYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI-G---R--------EEKLGTAN 665 (712)
Q Consensus 602 ~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~-g---~--------~~~l~~~~ 665 (712)
+++.||.+|.. ..++++|+.+|+++.+. ....++++||.+|..- | + .......+
T Consensus 320 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 320 ADYYLGQIYRRGYLGKVYPQKALDHLLTAARN----------GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT----------TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh----------ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 89999998887 34999999999999763 2346788999998741 1 1 22222223
Q ss_pred hhHHHHHHHHHHHHHH--hccHHHHHHHHHHHHHHhccc
Q 005139 666 PDVDDEKRRLAELLKE--AGRVRSRKAQSLETLLDANSR 702 (712)
Q Consensus 666 p~~~~~~~~la~~~~~--~g~~~~A~~~~l~~~l~~~p~ 702 (712)
+ .+...++.+... .++..+|. ...++....++.
T Consensus 390 ~---~a~~~l~~l~~~~~~~~~~~a~-~~~~~~~~~~~~ 424 (452)
T 3e4b_A 390 P---EANDLATQLEAPLTPAQRAEGQ-RLVQQELAARGT 424 (452)
T ss_dssp H---HHHHHHHHHHTTCCHHHHHHHH-HHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHhccc
Confidence 2 233444444432 45666777 777777776654
No 49
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.86 E-value=1.1e-20 Score=182.06 Aligned_cols=197 Identities=22% Similarity=0.208 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 005139 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344 (712)
Q Consensus 265 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 344 (712)
+.+++.+|.++...|++++|+..|++++++. |+++. ++..+|.++...|++++|+..|++++++
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~~------- 68 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-----PQDPE----ALYWLARTQLKLGLVNPALENGKTLVAR------- 68 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-----SSCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence 5678889999999999999999999999886 55544 4999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Q 005139 345 TDPRVGETCRYLAEAHVQA-----------LQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALE 413 (712)
Q Consensus 345 ~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~ 413 (712)
+|....++..+|.++... |++++|+..|++++++.+.. ..++..+|.++...|++++|+.
T Consensus 69 -~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~--------~~~~~~lg~~~~~~g~~~~A~~ 139 (217)
T 2pl2_A 69 -TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY--------APLHLQRGLVYALLGERDKAEA 139 (217)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc--------HHHHHHHHHHHHHcCChHHHHH
Confidence 788889999999999999 99999999999999987543 3478999999999999999999
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Q 005139 414 HLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRES 493 (712)
Q Consensus 414 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 493 (712)
.|++++.+. ....++.++|.+|...|++++|+..|++++++ .|....++..+|.++...|++++|
T Consensus 140 ~~~~al~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A 204 (217)
T 2pl2_A 140 SLKQALALE-------DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGKAEEA 204 (217)
T ss_dssp HHHHHHHHC-------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC-------
T ss_pred HHHHHHhcc-------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCHHHH
Confidence 999998653 34677899999999999999999999999998 888889999999999999999999
Q ss_pred HHHHHHHH
Q 005139 494 KSYCENAL 501 (712)
Q Consensus 494 ~~~~~~al 501 (712)
+..|+++-
T Consensus 205 ~~~~~~~~ 212 (217)
T 2pl2_A 205 ARAAALEH 212 (217)
T ss_dssp --------
T ss_pred HHHHHHHh
Confidence 99998764
No 50
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.85 E-value=1.8e-20 Score=180.42 Aligned_cols=197 Identities=17% Similarity=0.162 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH
Q 005139 393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA 472 (712)
Q Consensus 393 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 472 (712)
.++..+|.++...|++++|+..|++++ ...|....++..+|.++...|++++|+..|++++++ .|.
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al------~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~ 71 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERAL------KENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--------TPR 71 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH------TTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC
Confidence 478899999999999999999999998 567778899999999999999999999999999999 888
Q ss_pred HHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHH
Q 005139 473 VASVFVRLADMYNRT-----------GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQ 541 (712)
Q Consensus 473 ~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 541 (712)
...++..+|.++... |++++|+..|++++++ .|....++..+|.++...|++++|+..|+
T Consensus 72 ~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---------~P~~~~~~~~lg~~~~~~g~~~~A~~~~~ 142 (217)
T 2pl2_A 72 YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---------NPRYAPLHLQRGLVYALLGERDKAEASLK 142 (217)
T ss_dssp CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---------CcccHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 899999999999999 9999999999999999 45567889999999999999999999999
Q ss_pred HHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHH
Q 005139 542 KALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVE 621 (712)
Q Consensus 542 ~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 621 (712)
+++++. .. ..++..+|.+|...|++++|+..|++++++ .+....++..+|.++...|++++|+.
T Consensus 143 ~al~~~-~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~ 206 (217)
T 2pl2_A 143 QALALE-DT-------PEIRSALAELYLSMGRLDEALAQYAKALEQ--------APKDLDLRVRYASALLLKGKAEEAAR 206 (217)
T ss_dssp HHHHHC-CC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHTC---------
T ss_pred HHHhcc-cc-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCHHHHHH
Confidence 999985 32 468899999999999999999999999986 22335789999999999999999999
Q ss_pred HHHHHHH
Q 005139 622 LFEEARS 628 (712)
Q Consensus 622 ~~~~al~ 628 (712)
.|+++..
T Consensus 207 ~~~~~~~ 213 (217)
T 2pl2_A 207 AAALEHH 213 (217)
T ss_dssp -------
T ss_pred HHHHHhh
Confidence 9998754
No 51
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.85 E-value=1.4e-19 Score=182.80 Aligned_cols=250 Identities=11% Similarity=0.073 Sum_probs=199.3
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 005139 365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS 444 (712)
Q Consensus 365 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 444 (712)
++++|+.+|.++ |.+|...|++++|+.+|.+++.+....++.+..+.++.++|.+|..
T Consensus 32 ~~~~A~~~~~~a----------------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~ 89 (292)
T 1qqe_A 32 KFEEAADLCVQA----------------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKS 89 (292)
T ss_dssp HHHHHHHHHHHH----------------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH----------------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 488888887776 4567788999999999999999988888777889999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHH
Q 005139 445 LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT-GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV 523 (712)
Q Consensus 445 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l 523 (712)
+|++++|+.+|++++.+....+ +....+.++.++|.+|... |++++|+.+|++++.+.... ........++.++
T Consensus 90 ~g~~~~A~~~~~~Al~l~~~~g--~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~---~~~~~~~~~~~~l 164 (292)
T 1qqe_A 90 GGNSVNAVDSLENAIQIFTHRG--QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD---QSVALSNKCFIKC 164 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC---CChHHHHHHHHHH
Confidence 9999999999999999987764 2345578999999999996 99999999999999998752 2233446789999
Q ss_pred HHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHH
Q 005139 524 SSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVAL 603 (712)
Q Consensus 524 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 603 (712)
|.++..+|++++|+.+|++++.+.+...........++..+|.++..+|++++|+.+|++++.+........ ....+
T Consensus 165 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~---~~~~l 241 (292)
T 1qqe_A 165 ADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR---ESNFL 241 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------------HHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH---HHHHH
Confidence 999999999999999999999987655222234556788999999999999999999999998754433221 12455
Q ss_pred HHHHHHHH--HhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 005139 604 NQMGLACV--QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTY 652 (712)
Q Consensus 604 ~~lg~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~ 652 (712)
..++..+. ..+++++|+..|++++.+ +|....++..+-...
T Consensus 242 ~~l~~~~~~~~~~~~~~A~~~~~~~~~l--------~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 242 KSLIDAVNEGDSEQLSEHCKEFDNFMRL--------DKWKITILNKIKESI 284 (292)
T ss_dssp HHHHHHHHTTCTTTHHHHHHHHTTSSCC--------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCcc--------HHHHHHHHHHHHHHh
Confidence 66676665 456799999998888776 888777776666554
No 52
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.83 E-value=1.8e-18 Score=174.16 Aligned_cols=255 Identities=13% Similarity=0.027 Sum_probs=204.1
Q ss_pred HHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 005139 273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET 352 (712)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 352 (712)
.-.+..|+|..|+..+++..... |.........++.+|...|+++.|+..++.. .+....+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~--------p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----------~~~~~~a 67 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSS--------PERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----------SAPELQA 67 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCS--------HHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----------SCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCC--------chhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----------CChhHHH
Confidence 44667899999999999876543 2223445778899999999999999866541 3456788
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHH
Q 005139 353 CRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVA 432 (712)
Q Consensus 353 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 432 (712)
+..++..+...+++++|++.+++++... ..|.. ..++..+|.++...|++++|+.+|++ +...
T Consensus 68 ~~~la~~~~~~~~~~~A~~~l~~ll~~~---~~P~~---~~~~~~la~~~~~~g~~~~Al~~l~~-----------~~~~ 130 (291)
T 3mkr_A 68 VRMFAEYLASHSRRDAIVAELDREMSRS---VDVTN---TTFLLMAASIYFYDQNPDAALRTLHQ-----------GDSL 130 (291)
T ss_dssp HHHHHHHHHCSTTHHHHHHHHHHHHHSC---CCCSC---HHHHHHHHHHHHHTTCHHHHHHHHTT-----------CCSH
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHhcc---cCCCC---HHHHHHHHHHHHHCCCHHHHHHHHhC-----------CCCH
Confidence 9999999999999999999999887531 11222 34688999999999999999999975 3445
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 005139 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLA--DMYNRTGKLRESKSYCENALRIYEKPVPG 510 (712)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 510 (712)
.++..+|.++..+|++++|+..|++++.. .|.........+ .++...|++++|+.+|++++...
T Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--------~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~------ 196 (291)
T 3mkr_A 131 ECMAMTVQILLKLDRLDLARKELKKMQDQ--------DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC------ 196 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC------
Confidence 68889999999999999999999999988 444332222222 33445589999999999999983
Q ss_pred CCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHH
Q 005139 511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSD-SYDSFKNAISK 587 (712)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~ 587 (712)
|..+.+++.+|.++..+|++++|+..|++++.+.+.. ..++.++|.++...|++.+ +..++++++++
T Consensus 197 ---p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~-------~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 197 ---SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH-------PETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 3357789999999999999999999999999987655 4689999999999999976 56899999886
No 53
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.83 E-value=2.2e-18 Score=173.51 Aligned_cols=261 Identities=10% Similarity=0.030 Sum_probs=204.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHH-HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHH
Q 005139 228 ARELISSGDNPQKALELALRAAKSFEIGANGKPSLEL-VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALA 306 (712)
Q Consensus 228 a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~-~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 306 (712)
.+..+..|. |++|+..+++... .+|+. ......++.+|..+|++++|+..++.. ..+
T Consensus 6 ~~~~~~~g~-y~~ai~~~~~~~~---------~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----------~~~-- 63 (291)
T 3mkr_A 6 VKNAFYIGS-YQQCINEAQRVKP---------SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----------SAP-- 63 (291)
T ss_dssp HHHHHHTTC-HHHHHHHHHHSCC---------CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----------SCH--
T ss_pred HHHHHHHHH-HHHHHHHHHhccc---------CCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----------CCh--
Confidence 345677875 8888888776432 22443 456677899999999999999866541 111
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCC
Q 005139 307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386 (712)
Q Consensus 307 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 386 (712)
.+.++..++..+...+++++|+..+++++.. ..+|....++..+|.++...|++++|+.++++ +
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~------~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----------~ 127 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSR------SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----------G 127 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHS------CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----------C
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc------ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----------C
Confidence 3456888999999999999999999998764 11466778899999999999999999999987 1
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 005139 387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNK 466 (712)
Q Consensus 387 ~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 466 (712)
.. ..++..+|.++..+|++++|+..|++++... ++.. .......+..++...|++++|+.+|+++++.
T Consensus 128 ~~---~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~---p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~----- 195 (291)
T 3mkr_A 128 DS---LECMAMTVQILLKLDRLDLARKELKKMQDQD---EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK----- 195 (291)
T ss_dssp CS---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----
T ss_pred CC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-----
Confidence 12 3478899999999999999999999988641 2221 1111111223344569999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHH-HHHHHHHHHH
Q 005139 467 GENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQ-AIKLLQKALK 545 (712)
Q Consensus 467 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~ 545 (712)
.|....+++.+|.++..+|++++|+.+|++++.+ .|..+.++.++|.++...|++.+ +..+++++++
T Consensus 196 ---~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~---------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 196 ---CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK---------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp ---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6777889999999999999999999999999999 45567789999999999999976 5789999999
Q ss_pred HHHhC
Q 005139 546 IYNDA 550 (712)
Q Consensus 546 ~~~~~ 550 (712)
+.|+.
T Consensus 264 ~~P~~ 268 (291)
T 3mkr_A 264 AHRSH 268 (291)
T ss_dssp HCTTC
T ss_pred hCCCC
Confidence 87665
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.83 E-value=1.6e-18 Score=173.26 Aligned_cols=226 Identities=15% Similarity=0.178 Sum_probs=196.2
Q ss_pred CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH----cCCHhHHHHHHHHhh
Q 005139 217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCS----LGQYNEAIPVLEQSI 292 (712)
Q Consensus 217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~----~g~~~~A~~~~~~al 292 (712)
+|..+.+++.+|..++..|+ +++|+.+|+++++ +....+++.+|.+|.. .+++++|+.+|++++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~-~~~A~~~~~~a~~-----------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~ 69 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKD-FTQAKKYFEKACD-----------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC 69 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH-----------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhCCC-HHHHHHHHHHHHH-----------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHH
Confidence 46778899999999999997 9999999999987 1124678899999999 999999999999998
Q ss_pred chhhhhhcccchHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----hC
Q 005139 293 EIPVIEEGQEHALAKFAGHMQLGDTYAM----LGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ----AL 364 (712)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g 364 (712)
+.. + ..+++.+|.+|.. .+++++|+.+|+++++. ....++..+|.+|.. .+
T Consensus 70 ~~~-------~----~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----------~~~~a~~~lg~~~~~~~~~~~ 128 (273)
T 1ouv_A 70 DLN-------Y----SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----------KYAEGCASLGGIYHDGKVVTR 128 (273)
T ss_dssp HTT-------C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHCSSSCC
T ss_pred HCC-------C----HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----------CCccHHHHHHHHHHcCCCccc
Confidence 763 2 3358999999999 99999999999999876 245789999999999 99
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 005139 365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET----KGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGD 440 (712)
Q Consensus 365 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 440 (712)
++++|+.+|+++++.. ...++..+|.+|.. .+++++|+.+|++++.. ....++..+|.
T Consensus 129 ~~~~A~~~~~~a~~~~----------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~lg~ 190 (273)
T 1ouv_A 129 DFKKAVEYFTKACDLN----------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--------KDSPGCFNAGN 190 (273)
T ss_dssp CHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------TCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC----------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHH
Confidence 9999999999999753 13478899999999 99999999999999853 12577899999
Q ss_pred HHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 005139 441 TYLS----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR----TGKLRESKSYCENALRI 503 (712)
Q Consensus 441 ~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 503 (712)
+|.. .+++++|+.+|+++++. .+ ..++..+|.+|.. .+++++|+.+|++++++
T Consensus 191 ~~~~g~~~~~~~~~A~~~~~~a~~~--------~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 191 MYHHGEGATKNFKEALARYSKACEL--------EN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHTCSSCCCHHHHHHHHHHHHHT--------TC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHcCCCCCccHHHHHHHHHHHHhC--------CC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 9999 99999999999999986 33 5788999999999 99999999999999998
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.82 E-value=2.9e-18 Score=171.42 Aligned_cols=225 Identities=18% Similarity=0.223 Sum_probs=196.3
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHH
Q 005139 347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET----KGDHEAALEHLVLASMTM 422 (712)
Q Consensus 347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 422 (712)
|..+.+++.+|.++...|++++|+.+|+++++. . . ..++..+|.++.. .+++++|+.+|++++..
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~---~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~- 71 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL----K---E---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL- 71 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----T---C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----C---C---HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-
Confidence 455678999999999999999999999999871 1 1 3478999999999 99999999999999853
Q ss_pred HhCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHH
Q 005139 423 IANDQDAEVASVDCSIGDTYLS----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR----TGKLRESK 494 (712)
Q Consensus 423 ~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~ 494 (712)
....+++.+|.+|.. .+++++|+.+|+++++. . ...++..+|.+|.. .+++++|+
T Consensus 72 -------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--------~--~~~a~~~lg~~~~~~~~~~~~~~~A~ 134 (273)
T 1ouv_A 72 -------NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--------K--YAEGCASLGGIYHDGKVVTRDFKKAV 134 (273)
T ss_dssp -------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------T--CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred -------CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--------C--CccHHHHHHHHHHcCCCcccCHHHHH
Confidence 146788999999999 99999999999999885 2 35789999999999 99999999
Q ss_pred HHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Q 005139 495 SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES----MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM 570 (712)
Q Consensus 495 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~ 570 (712)
.+|+++++.. ...++..+|.+|.. .+++++|+.+|+++++.. . ..++..+|.+|..
T Consensus 135 ~~~~~a~~~~-----------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~----~~a~~~lg~~~~~ 194 (273)
T 1ouv_A 135 EYFTKACDLN-----------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK-----D----SPGCFNAGNMYHH 194 (273)
T ss_dssp HHHHHHHHTT-----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----C----HHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-----------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----C----HHHHHHHHHHHHc
Confidence 9999999861 25678899999999 999999999999998751 1 3578899999999
Q ss_pred ----cCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Q 005139 571 ----LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ----RYSINEAVELFEEARSI 629 (712)
Q Consensus 571 ----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~ 629 (712)
.+++++|+.+|+++++. .+ ..++..+|.+|.. .+++++|+.+|++++++
T Consensus 195 g~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 195 GEGATKNFKEALARYSKACEL-------EN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp TCSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHhC-------CC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 99999999999999874 12 3789999999999 99999999999999998
No 56
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.82 E-value=1.9e-20 Score=201.26 Aligned_cols=346 Identities=13% Similarity=0.062 Sum_probs=241.7
Q ss_pred CcccccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCH---HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 005139 195 TPMKKRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNP---QKALELALRAAKSFEIGANGKPSLELVMCLHVI 271 (712)
Q Consensus 195 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~---~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~l 271 (712)
......|++.+|+..+..+... ....+++.+|.+++..|+ + ++|+.+|++|++. .+.+++.|
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~-~~d~~~A~~~~~~A~~~------------~~~A~~~L 75 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRD-PAQIKQAEATYRAAADT------------SPRAQARL 75 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-----------------------------------------CHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCC-CCCHHHHHHHHHHHHhC------------CHHHHHHH
Confidence 3445667777777555544322 345567788888888875 7 8999999999854 25578889
Q ss_pred HHHHHHcC-----CHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Q 005139 272 AAIYCSLG-----QYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETD 346 (712)
Q Consensus 272 a~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 346 (712)
|.++...+ ++++|+.+|++++... ++. +++.||.+|...+...++...++.......
T Consensus 76 g~~~~~~~~~~~~~~~~A~~~~~~Aa~~g-------~~~----A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~------- 137 (452)
T 3e4b_A 76 GRLLAAKPGATEAEHHEAESLLKKAFANG-------EGN----TLIPLAMLYLQYPHSFPNVNAQQQISQWQA------- 137 (452)
T ss_dssp HHHHHTC--CCHHHHHHHHHHHHHHHHTT-------CSS----CHHHHHHHHHHCGGGCTTCCHHHHHHHHHH-------
T ss_pred HHHHHhCCCCCCcCHHHHHHHHHHHHHCC-------CHH----HHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-------
Confidence 99777766 8899999999998742 222 488999999998876665544444433322
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHH
Q 005139 347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG---DHEAALEHLVLASMTMI 423 (712)
Q Consensus 347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~ 423 (712)
+....+++.||.+|...+.++++................ .+++.||.+|...| ++++|+.+|+++..
T Consensus 138 ~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~-------~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~--- 207 (452)
T 3e4b_A 138 AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTD-------ICYVELATVYQKKQQPEQQAELLKQMEAGVS--- 207 (452)
T ss_dssp HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT-------THHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---
T ss_pred CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHcCCcccHHHHHHHHHHHHH---
Confidence 123568889999999999777777665554444333221 17899999999999 99999999999973
Q ss_pred hCCCChhHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-H--HHcCCHHHHHHH
Q 005139 424 ANDQDAEVASVDCSIGDTYLSL----SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADM-Y--NRTGKLRESKSY 496 (712)
Q Consensus 424 ~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~-~--~~~g~~~~A~~~ 496 (712)
..+..+..++++|.+|... +++++|+.+|+++. +....++++||.+ + ...+++++|+.+
T Consensus 208 ---~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~ 273 (452)
T 3e4b_A 208 ---RGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----------PGYPASWVSLAQLLYDFPELGDVEQMMKY 273 (452)
T ss_dssp ---TTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----------GGSTHHHHHHHHHHHHSGGGCCHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 3444556678899999765 79999999999986 2235688999998 4 468999999999
Q ss_pred HHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcc-----cHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH-
Q 005139 497 CENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN-----ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM- 570 (712)
Q Consensus 497 ~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~- 570 (712)
|+++.+. + ...++++||.+|. .| ++++|+.+|+++. +.. ..+++.||.+|..
T Consensus 274 ~~~Aa~~------g-----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~-------~~A~~~Lg~~y~~G 331 (452)
T 3e4b_A 274 LDNGRAA------D-----QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GRE-------VAADYYLGQIYRRG 331 (452)
T ss_dssp HHHHHHT------T-----CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTC-------HHHHHHHHHHHHTT
T ss_pred HHHHHHC------C-----CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCC-------HHHHHHHHHHHHCC
Confidence 9999865 1 3678999999998 66 9999999999998 222 3688899999887
Q ss_pred ---cCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Q 005139 571 ---LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ----RYSINEAVELFEEARSI 629 (712)
Q Consensus 571 ---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~ 629 (712)
..++++|+.+|+++.+. + . ..+++.||.+|.. ..++.+|..+|++|.+.
T Consensus 332 ~g~~~d~~~A~~~~~~Aa~~----g---~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 332 YLGKVYPQKALDHLLTAARN----G---Q---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp TTSSCCHHHHHHHHHHHHTT----T---C---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred CCCCcCHHHHHHHHHHHHhh----C---h---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 34999999999999762 1 1 2678899999985 45899999999999874
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.82 E-value=3.6e-19 Score=174.33 Aligned_cols=219 Identities=17% Similarity=0.162 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 005139 391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH 470 (712)
Q Consensus 391 ~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 470 (712)
.+..+..+|.++...|++++|+.+|++++. ..+....++..+|.++...|++++|+.++++++.. .
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~ 87 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIE------ENKEDAIPYINFANLLSSVNELERALAFYDKALEL--------D 87 (243)
T ss_dssp --------------------CCTTHHHHHT------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHH------hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------C
Confidence 355788999999999999999999999983 45566788999999999999999999999999998 6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139 471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (712)
Q Consensus 471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (712)
|....++..+|.++...|++++|+.+|++++.+... ...++..+|.++...|++++|+.++++++...+..
T Consensus 88 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 158 (243)
T 2q7f_A 88 SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME---------NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND 158 (243)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC---------SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 777889999999999999999999999999998432 35679999999999999999999999999885543
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 005139 551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSIL 630 (712)
Q Consensus 551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 630 (712)
..++..+|.++...|++++|+.+|++++... +....++..+|.++...|++++|+.+|++++++
T Consensus 159 -------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~- 222 (243)
T 2q7f_A 159 -------TEARFQFGMCLANEGMLDEALSQFAAVTEQD--------PGHADAFYNAGVTYAYKENREKALEMLDKAIDI- 222 (243)
T ss_dssp -------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH-
T ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc-
Confidence 3578899999999999999999999998862 122468999999999999999999999999998
Q ss_pred HHhcCCCChhhHHHHHHHHHHHHHc
Q 005139 631 EQECGPYHPDTLGVYSNLAGTYDAI 655 (712)
Q Consensus 631 ~~~~~~~~p~~~~~~~~La~~~~~~ 655 (712)
+|+...++..++.+....
T Consensus 223 -------~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 223 -------QPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp -------CTTCHHHHHHHTC-----
T ss_pred -------CcchHHHHHHHHHHHhhc
Confidence 888888888887765543
No 58
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=5.1e-17 Score=185.00 Aligned_cols=349 Identities=14% Similarity=0.063 Sum_probs=213.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH---------------H---------HHHHHHHHcCC
Q 005139 225 LKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCL---------------H---------VIAAIYCSLGQ 280 (712)
Q Consensus 225 ~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l---------------~---------~la~~~~~~g~ 280 (712)
-..++.|...|. +.+|++++++++-- .... ..+...-..+ . .+|.++...|.
T Consensus 989 s~~vKaf~~agl-p~EaieLLEKivl~-~s~f--s~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lgl 1064 (1630)
T 1xi4_A 989 SVTVKAFMTADL-PNELIELLEKIVLD-NSVF--SEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNEL 1064 (1630)
T ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHcC-CCcc--cccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCC
Confidence 345677788886 99999999999822 1100 0111111111 0 12555666666
Q ss_pred HhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 005139 281 YNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAH 360 (712)
Q Consensus 281 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 360 (712)
|++|..+|+++... ...+...+...+++++|+++++++ ....+|..+|.++
T Consensus 1065 yEEAf~IYkKa~~~----------------~~A~~VLie~i~nldrAiE~Aerv-------------n~p~vWsqLAKAq 1115 (1630)
T 1xi4_A 1065 FEEAFAIFRKFDVN----------------TSAVQVLIEHIGNLDRAYEFAERC-------------NEPAVWSQLAKAQ 1115 (1630)
T ss_pred HHHHHHHHHHcCCH----------------HHHHHHHHHHHhhHHHHHHHHHhc-------------CCHHHHHHHHHHH
Confidence 66666666654211 011122233445555555554432 2245666777777
Q ss_pred HHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 005139 361 VQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGD 440 (712)
Q Consensus 361 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 440 (712)
...|++++|+..|.++ .+ ...|..+|.++...|+|++|+++|..|...... ..+...+|.
T Consensus 1116 l~~G~~kEAIdsYiKA-------dD------~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-------~~Idt~Laf 1175 (1630)
T 1xi4_A 1116 LQKGMVKEAIDSYIKA-------DD------PSSYMEVVQAANTSGNWEELVKYLQMARKKARE-------SYVETELIF 1175 (1630)
T ss_pred HhCCCHHHHHHHHHhc-------CC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-------ccccHHHHH
Confidence 7777777777777654 10 124566677777777777777777666542211 011123666
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHH
Q 005139 441 TYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGL 520 (712)
Q Consensus 441 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 520 (712)
+|.+++++++ ++.|. . .+.. ..+..+|..+...|+|++|..+|.++ ..|
T Consensus 1176 aYAKl~rlee-le~fI---~---------~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA-----------------~ny 1224 (1630)
T 1xi4_A 1176 ALAKTNRLAE-LEEFI---N---------GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV-----------------SNF 1224 (1630)
T ss_pred HHHhhcCHHH-HHHHH---h---------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh-----------------hHH
Confidence 6666666663 33221 1 1222 24446777777777777777777664 135
Q ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHH
Q 005139 521 TDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFG 600 (712)
Q Consensus 521 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 600 (712)
..+|.+|..+|++++|++.+++|... .+|...+.++...|+|..|..+... +.. .+
T Consensus 1225 ~rLA~tLvkLge~q~AIEaarKA~n~------------~aWkev~~acve~~Ef~LA~~cgl~-Iiv-----------~~ 1280 (1630)
T 1xi4_A 1225 GRLASTLVHLGEYQAAVDGARKANST------------RTWKEVCFACVDGKEFRLAQMCGLH-IVV-----------HA 1280 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHhCCH------------HHHHHHHHHHhhhhHHHHHHHHHHh-hhc-----------CH
Confidence 66777777777777777777776221 4566667777777777777666553 211 12
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc---------hhhhCCCCh-----
Q 005139 601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR---------EEKLGTANP----- 666 (712)
Q Consensus 601 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~---------~~~l~~~~p----- 666 (712)
..+..++..|...|.+++|+.+++.++.+ ++.....+..|+.+|.+-.- +..-....+
T Consensus 1281 deLeeli~yYe~~G~feEAI~LlE~aL~L--------eraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~ 1352 (1630)
T 1xi4_A 1281 DELEELINYYQDRGYFEELITMLEAALGL--------ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAA 1352 (1630)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhcc--------ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHH
Confidence 45668889999999999999999999998 77777888888888877654 222233344
Q ss_pred hHHHHHHHHHHHHHHhccHHHHH
Q 005139 667 DVDDEKRRLAELLKEAGRVRSRK 689 (712)
Q Consensus 667 ~~~~~~~~la~~~~~~g~~~~A~ 689 (712)
+.+..|..+..+|.+.|+++.|.
T Consensus 1353 e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1353 EQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHHHHHHhcccHHHHH
Confidence 55677999999999999999998
No 59
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=2.2e-17 Score=181.86 Aligned_cols=380 Identities=9% Similarity=-0.038 Sum_probs=262.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 005139 262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV 341 (712)
Q Consensus 262 ~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 341 (712)
|....++..++.. ...|++++|...|+++++.. |..+ .+|..++..+...|++++|...|++++..
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-----P~~~----~~w~~~~~~~~~~~~~~~a~~~~~ral~~---- 75 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-----PSSG----RFWKLYIEAEIKAKNYDKVEKLFQRCLMK---- 75 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTTT----
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-----CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----
Confidence 4446677777774 77999999999999999886 4443 35899999999999999999999999987
Q ss_pred hCCCChhHHHHHHHHHH-HHHHhCCHHHHHH----HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH---------cCC
Q 005139 342 LGETDPRVGETCRYLAE-AHVQALQFSEAQK----FCQMALDIHKDNGSPASLEEAADRRLMGLICET---------KGD 407 (712)
Q Consensus 342 ~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~----~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~---------~g~ 407 (712)
.|. ...|..++. +....|++++|.+ .|++++....... .. ..+|...+..... .|+
T Consensus 76 ----~p~-~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~--~~---~~~w~~~~~~~~~~~~~~~~~~~~~ 145 (530)
T 2ooe_A 76 ----VLH-IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEI--MS---YQIWVDYINFLKGVEAVGSYAENQR 145 (530)
T ss_dssp ----CCC-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTST--TC---HHHHHHHHHHHHHSCCCSSTTHHHH
T ss_pred ----CCC-hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCc--cc---HHHHHHHHHHHhcCCCcccHHHHhH
Confidence 454 346766664 4445688877766 6666665432211 11 2355555655544 789
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHHHHHHHhcCC---CCH
Q 005139 408 HEAALEHLVLASMTMIANDQDAEVASVDCSIGDTY-------------LSLSRYDEAGFAYQKALTAFKTNKGE---NHP 471 (712)
Q Consensus 408 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-------------~~~g~~~~A~~~~~~al~~~~~~~~~---~~~ 471 (712)
++.|..+|++++.. +.. .....+...+... ...+++..|...+.+...+....... -.|
T Consensus 146 ~~~a~~~y~~al~~----P~~-~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 146 ITAVRRVYQRGCVN----PMI-NIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp HHHHHHHHHHHTTS----CCT-THHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred HHHHHHHHHHHHhc----hhh-hHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 99999999999841 111 1122222222111 12456777777666543332222100 011
Q ss_pred -------HHHHHHHHHHHHHHHc----CCH----HHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHH-------
Q 005139 472 -------AVASVFVRLADMYNRT----GKL----RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES------- 529 (712)
Q Consensus 472 -------~~~~~~~~la~~~~~~----g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~------- 529 (712)
.....|.......... ++. ..++..|++++... |....+|..+|.++..
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~---------p~~~~~w~~~~~~~~~~~~~~~~ 291 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL---------GHHPDIWYEAAQYLEQSSKLLAE 291 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHhchhhhh
Confidence 1234444443332221 232 47889999999984 3347789999999886
Q ss_pred cccHH-------HHHHHHHHHHH-HHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHH
Q 005139 530 MNELE-------QAIKLLQKALK-IYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGV 601 (712)
Q Consensus 530 ~g~~~-------~A~~~~~~al~-~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 601 (712)
.|+++ +|+..|++|+. +.+. ...++..+|.++...|++++|...|++++.+ . +.....
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~-------~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~-----~--p~~~~~ 357 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKK-------NMLLYFAYADYEESRMKYEKVHSIYNRLLAI-----E--DIDPTL 357 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSS-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-----S--SSCHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcc-------cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc-----c--ccCchH
Confidence 79987 88899998886 4332 2468889999999999999999999999984 1 111235
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH-HHHccc-------hhhhCCCChhHHHHHH
Q 005139 602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT-YDAIGR-------EEKLGTANPDVDDEKR 673 (712)
Q Consensus 602 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~-~~~~g~-------~~~l~~~~p~~~~~~~ 673 (712)
+|..+|.++...|++++|+.+|++|++. .|.....+...+.+ +...|+ ++......|+.+.++.
T Consensus 358 ~~~~~~~~~~~~~~~~~A~~~~~~Al~~--------~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~ 429 (530)
T 2ooe_A 358 VYIQYMKFARRAEGIKSGRMIFKKARED--------ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVL 429 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC--------TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--------cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHH
Confidence 8999999999999999999999999885 44444555555544 345666 3333355688889999
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005139 674 RLAELLKEAGRVRSRKAQSLETLLDANSR 702 (712)
Q Consensus 674 ~la~~~~~~g~~~~A~~~~l~~~l~~~p~ 702 (712)
.++.++...|++++|. ..|++++...|.
T Consensus 430 ~~~~~~~~~g~~~~Ar-~~~~~al~~~~~ 457 (530)
T 2ooe_A 430 AYIDYLSHLNEDNNTR-VLFERVLTSGSL 457 (530)
T ss_dssp HHHHHHTTTTCHHHHH-HHHHHHHHSCCS
T ss_pred HHHHHHHhCCCHhhHH-HHHHHHHhccCC
Confidence 9999999999999999 999999998664
No 60
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.81 E-value=5.5e-18 Score=171.11 Aligned_cols=234 Identities=13% Similarity=0.057 Sum_probs=185.9
Q ss_pred CHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 005139 323 QLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLIC 402 (712)
Q Consensus 323 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~ 402 (712)
++++|+.+|.++ |.+|...|++++|+.+|.+++.+.+..+. ....+.++.++|.+|
T Consensus 32 ~~~~A~~~~~~a----------------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~a~~~~~lg~~~ 87 (292)
T 1qqe_A 32 KFEEAADLCVQA----------------------ATIYRLRKELNLAGDSFLKAADYQKKAGN--EDEAGNTYVEAYKCF 87 (292)
T ss_dssp HHHHHHHHHHHH----------------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH----------------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHH
Confidence 488888888776 44577889999999999999999987753 345678999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005139 403 ETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL-SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLA 481 (712)
Q Consensus 403 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 481 (712)
..+|++++|+.+|++++.+....++....+.++.++|.+|... |++++|+.+|++++++..... +......++..+|
T Consensus 88 ~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~--~~~~~~~~~~~lg 165 (292)
T 1qqe_A 88 KSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ--SVALSNKCFIKCA 165 (292)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC--ChHHHHHHHHHHH
Confidence 9999999999999999999988887777889999999999996 999999999999999977543 1233467899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHH
Q 005139 482 DMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIE 561 (712)
Q Consensus 482 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 561 (712)
.++..+|++++|+.+|++++.+.... .........++..+|.++..+|++++|+.+|++++.+.+..... .....+
T Consensus 166 ~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~--~~~~~l 241 (292)
T 1qqe_A 166 DLKALDGQYIEASDIYSKLIKSSMGN--RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS--RESNFL 241 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTSSC--TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHhcC--CcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc--HHHHHH
Confidence 99999999999999999999985442 11112345678999999999999999999999999987765321 122345
Q ss_pred HHHHHHHH--HcCCHHHHHHHHHHHHH
Q 005139 562 AQMGVMYY--MLGNYSDSYDSFKNAIS 586 (712)
Q Consensus 562 ~~la~~~~--~~g~~~~A~~~~~~al~ 586 (712)
..++..+. ..+++++|+..|++++.
T Consensus 242 ~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 242 KSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 56666664 45678888888877654
No 61
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.81 E-value=5.7e-19 Score=176.44 Aligned_cols=252 Identities=16% Similarity=0.032 Sum_probs=198.0
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHH
Q 005139 234 SGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQ 313 (712)
Q Consensus 234 ~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 313 (712)
.|+ +++|+..|+++++.. ....+..+.++..+|.++...|++++|+.+|++++.+. +..+ .++..
T Consensus 18 ~~~-~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----~~~~----~~~~~ 82 (275)
T 1xnf_A 18 TLQ-QEVILARMEQILASR-----ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-----PDMP----EVFNY 82 (275)
T ss_dssp CHH-HHHHHHHHHHHHTSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----CCCH----HHHHH
T ss_pred cch-HHHHHHHHHHHHhcc-----cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-----CCcH----HHHHH
Confidence 355 899999999998642 22346788999999999999999999999999999885 4443 35899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q 005139 314 LGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAA 393 (712)
Q Consensus 314 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~ 393 (712)
+|.++...|++++|+.+|++++.+ .|....++..+|.++...|++++|+.++++++.+.+... .
T Consensus 83 la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~--------~ 146 (275)
T 1xnf_A 83 LGIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP--------F 146 (275)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--------H
T ss_pred HHHHHHHccCHHHHHHHHHHHHhc--------CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh--------H
Confidence 999999999999999999999998 566678999999999999999999999999998765432 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 005139 394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAV 473 (712)
Q Consensus 394 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 473 (712)
... ...++...|++++|+.++.+++... .... ....++.++...+++++|+..+++++...... .+..
T Consensus 147 ~~~-~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~ 214 (275)
T 1xnf_A 147 RSL-WLYLAEQKLDEKQAKEVLKQHFEKS---DKEQ----WGWNIVEFYLGNISEQTLMERLKADATDNTSL----AEHL 214 (275)
T ss_dssp HHH-HHHHHHHHHCHHHHHHHHHHHHHHS---CCCS----THHHHHHHHTTSSCHHHHHHHHHHHCCSHHHH----HHHH
T ss_pred HHH-HHHHHHHhcCHHHHHHHHHHHHhcC---Ccch----HHHHHHHHHHHhcCHHHHHHHHHHHhcccccc----cccc
Confidence 222 2334467799999999999887542 2221 12347778888999999999999988764332 3455
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHH
Q 005139 474 ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLL 540 (712)
Q Consensus 474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 540 (712)
..++..+|.+|...|++++|+.+|++++.+... . +...+.++...|++++|+..+
T Consensus 215 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~---~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 215 SETNFYLGKYYLSLGDLDSATALFKLAVANNVH---------N---FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT---------T---CHHHHHHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch---------h---HHHHHHHHHHHHHHHhhHHHH
Confidence 789999999999999999999999999987321 1 223477888899999998887
No 62
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.80 E-value=5e-19 Score=176.88 Aligned_cols=259 Identities=13% Similarity=0.038 Sum_probs=201.1
Q ss_pred HHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHH
Q 005139 271 IAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVG 350 (712)
Q Consensus 271 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 350 (712)
++..+...|++++|+..|+++++.. +..+.....++..+|.++...|++++|+.+|++++.+ +|...
T Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~ 77 (275)
T 1xnf_A 11 LAVPLQPTLQQEVILARMEQILASR-----ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMP 77 (275)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCH
T ss_pred eeeccCccchHHHHHHHHHHHHhcc-----cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------CCCcH
Confidence 3444555689999999999999873 2222335667999999999999999999999999998 67778
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChh
Q 005139 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE 430 (712)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 430 (712)
.++..+|.++...|++++|+.+|++++.+.+.. ..++..+|.++...|++++|+.+|++++... +..+
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~- 145 (275)
T 1xnf_A 78 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY--------NYAHLNRGIALYYGGRDKLAQDDLLAFYQDD---PNDP- 145 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCH-
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCccc--------cHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCCh-
Confidence 899999999999999999999999999986543 2478999999999999999999999998642 2222
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 005139 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG 510 (712)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 510 (712)
.....++ ++...|++++|+.++++++.. .+..... ..++.++...++.++|+..+.+++......
T Consensus 146 --~~~~~~~-~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--- 210 (275)
T 1xnf_A 146 --FRSLWLY-LAEQKLDEKQAKEVLKQHFEK--------SDKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSL--- 210 (275)
T ss_dssp --HHHHHHH-HHHHHHCHHHHHHHHHHHHHH--------SCCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHH---
T ss_pred --HHHHHHH-HHHHhcCHHHHHHHHHHHHhc--------CCcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccc---
Confidence 2222333 346679999999999999886 2222222 347788888999999999999987764331
Q ss_pred CCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHH
Q 005139 511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSF 581 (712)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 581 (712)
.+....++..+|.+|...|++++|+.+|++++.+.+.. +...+.++...|++++|+..|
T Consensus 211 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 211 --AEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN----------FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT----------CHHHHHHHHHHHHHHHC----
T ss_pred --cccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh----------HHHHHHHHHHHHHHHhhHHHH
Confidence 23447889999999999999999999999999875322 123467788889999998877
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.80 E-value=5e-18 Score=158.63 Aligned_cols=171 Identities=22% Similarity=0.277 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 005139 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV 511 (712)
Q Consensus 432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 511 (712)
+.+|+++|.+|..+|++++|+.+|++++++ +|....++..+|.+|...|++++|+..+.+++...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~------- 69 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD------- 69 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------
Confidence 568999999999999999999999999999 88889999999999999999999999999999883
Q ss_pred CChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 005139 512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI 591 (712)
Q Consensus 512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 591 (712)
+....++..+|.++...++++.|...+.+++.+.+.. ..++..+|.+|..+|++++|+.+|++++++
T Consensus 70 --~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~---- 136 (184)
T 3vtx_A 70 --TTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVY-------ADAYYKLGLVYDSMGEHDKAIEAYEKTISI---- 136 (184)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred --chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-------hHHHHHHHHHHHHhCCchhHHHHHHHHHHh----
Confidence 3346788999999999999999999999999886554 467889999999999999999999999986
Q ss_pred CCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 005139 592 GERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTL 642 (712)
Q Consensus 592 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~ 642 (712)
.+....++..+|.+|..+|++++|+.+|++|+++ +|+.+
T Consensus 137 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~a 175 (184)
T 3vtx_A 137 ----KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK--------EEKKA 175 (184)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------THHHH
T ss_pred ----cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC--------CccCH
Confidence 2234578999999999999999999999999998 77754
No 64
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.80 E-value=7.3e-19 Score=172.11 Aligned_cols=220 Identities=17% Similarity=0.161 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 005139 264 LVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLG 343 (712)
Q Consensus 264 ~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 343 (712)
.+..++.+|.++...|++++|+.+|++++... +..+ .++..+|.++...|++++|+.+|++++..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~------ 86 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-----KEDA----IPYINFANLLSSVNELERALAFYDKALEL------ 86 (243)
T ss_dssp --------------------CCTTHHHHHTTC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-----cccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc------
Confidence 46678889999999999999999999999865 3333 35899999999999999999999999988
Q ss_pred CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139 344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMI 423 (712)
Q Consensus 344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 423 (712)
.|....++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++..
T Consensus 87 --~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-- 154 (243)
T 2q7f_A 87 --DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN--------GDLFYMLGTVLVKLEQPKLALPYLQRAVEL-- 154 (243)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS--------HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--
T ss_pred --CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--
Confidence 56778899999999999999999999999999876432 347889999999999999999999999854
Q ss_pred hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139 424 ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (712)
Q Consensus 424 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (712)
.+....++..+|.++...|++++|+.++++++.. .|....++..+|.+|...|++++|+.+|++++++
T Consensus 155 ----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 155 ----NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ--------DPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp ----CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred ----CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 3344568899999999999999999999999998 6666789999999999999999999999999998
Q ss_pred HhcCCCCCCChhHHHHHHHHHHHHHHcc
Q 005139 504 YEKPVPGVPPEEIASGLTDVSSIYESMN 531 (712)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~la~~~~~~g 531 (712)
. |....++..++.+....+
T Consensus 223 ~---------p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 223 Q---------PDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp C---------TTCHHHHHHHTC------
T ss_pred C---------cchHHHHHHHHHHHhhcc
Confidence 3 334555666665554433
No 65
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.80 E-value=7.9e-18 Score=171.32 Aligned_cols=248 Identities=15% Similarity=0.098 Sum_probs=198.9
Q ss_pred HhCCHHHHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 005139 362 QALQFSEAQKFCQMALDIHKDNG---SPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI 438 (712)
Q Consensus 362 ~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 438 (712)
..|++++|..+++++.+..+... ..+.......+...|.+|...|++++|+.+|.+++.+....++....+.++.++
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35678888888888887765321 123334445666778899999999999999999999998888888889999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHH
Q 005139 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS 518 (712)
Q Consensus 439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 518 (712)
|.+|..+|++++|+.+|++++.+..... +....+.++.++|.+|.. |++++|+.+|++++.+.... ........
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g--~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~---~~~~~~~~ 156 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENG--TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE---ERLRQAAE 156 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT---TCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC---CChhHHHH
Confidence 9999999999999999999999987654 234567899999999999 99999999999999998763 23445678
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChH
Q 005139 519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAF 598 (712)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 598 (712)
++.++|.+|..+|++++|+.+|++++.+.+.. +.......++..+|.++..+|++++|+.+|++++ +...... ..
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~---~~ 231 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEM-ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG---SE 231 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT---SH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC---CH
Confidence 99999999999999999999999999999876 3344555688899999999999999999999998 5322221 22
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHH
Q 005139 599 FGVALNQMGLACVQRYSINEAVE 621 (712)
Q Consensus 599 ~~~~~~~lg~~~~~~g~~~~A~~ 621 (712)
....+..++..+ ..|+.+.+..
T Consensus 232 e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 232 DCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHH-HhcCHHHHHH
Confidence 334566666666 5677665555
No 66
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.79 E-value=2e-17 Score=168.29 Aligned_cols=215 Identities=16% Similarity=0.173 Sum_probs=180.3
Q ss_pred cCCHHHHHHHHHHHHHHHHh-----CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 005139 405 KGDHEAALEHLVLASMTMIA-----NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVR 479 (712)
Q Consensus 405 ~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 479 (712)
.|++++|.++++++...... .++.......+...|.+|...|++++|+.+|.+++++..... +....+.++.+
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~a~~~~~ 81 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNR--SLFHAAKAFEQ 81 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHH
Confidence 46777888888887765542 223334455666778899999999999999999999988764 34567889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHH
Q 005139 480 LADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAG 559 (712)
Q Consensus 480 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 559 (712)
+|.+|..+|++++|+.+|++++.++... .+....+.++.++|.+|.. |++++|+.+|++++.+.+.. +.......
T Consensus 82 lg~~~~~~g~~~~A~~~~~~Al~l~~~~---g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~-~~~~~~~~ 156 (307)
T 2ifu_A 82 AGMMLKDLQRMPEAVQYIEKASVMYVEN---GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE-ERLRQAAE 156 (307)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC-CChhHHHH
Confidence 9999999999999999999999998763 2344567899999999999 99999999999999999875 55455678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139 560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (712)
Q Consensus 560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 629 (712)
++.++|.+|..+|++++|+.+|++++.+...... ......++..+|.++..+|++++|+.+|++++ +
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~ 223 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN--YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S 223 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C
Confidence 8999999999999999999999999999887654 23455688999999999999999999999999 6
No 67
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.79 E-value=1.1e-17 Score=164.72 Aligned_cols=207 Identities=19% Similarity=0.156 Sum_probs=183.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCC
Q 005139 307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386 (712)
Q Consensus 307 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 386 (712)
...++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.++++++...+..
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--- 104 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEI--------DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRN--- 104 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc---
Confidence 4567999999999999999999999999988 56678899999999999999999999999999885432
Q ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 005139 387 ASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNK 466 (712)
Q Consensus 387 ~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 466 (712)
..++..+|.++...|++++|+.+|++++. .+..+....++..+|.++...|++++|+.++++++..
T Consensus 105 -----~~~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----- 170 (252)
T 2ho1_A 105 -----ARVLNNYGGFLYEQKRYEEAYQRLLEASQ----DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL----- 170 (252)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHHHHHHHHHTT----CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred -----HHHHHHHHHHHHHHhHHHHHHHHHHHHHh----CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----
Confidence 34788999999999999999999999874 2356778889999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 005139 467 GENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI 546 (712)
Q Consensus 467 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 546 (712)
.|....++..+|.++...|++++|+.++++++... +....++..++.++...|++++|..++++++..
T Consensus 171 ---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 171 ---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGG---------GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp ---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS---------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66667889999999999999999999999998762 234567889999999999999999999999988
Q ss_pred HHhC
Q 005139 547 YNDA 550 (712)
Q Consensus 547 ~~~~ 550 (712)
.+..
T Consensus 239 ~p~~ 242 (252)
T 2ho1_A 239 YPGS 242 (252)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 6543
No 68
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.78 E-value=1.3e-17 Score=164.45 Aligned_cols=211 Identities=15% Similarity=0.084 Sum_probs=181.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Q 005139 392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP 471 (712)
Q Consensus 392 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 471 (712)
+.++..+|.++...|++++|+.+|++++.. .+....++..+|.++...|++++|+.+|++++.. .|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~ 102 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI------DPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--------DS 102 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------Cc
Confidence 678999999999999999999999999854 3445678999999999999999999999999998 66
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCC
Q 005139 472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP 551 (712)
Q Consensus 472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 551 (712)
....++..+|.++...|++++|+.+|++++. . . ..+....++..+|.++...|++++|+.++++++...+..
T Consensus 103 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~-~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~- 174 (252)
T 2ho1_A 103 RNARVLNNYGGFLYEQKRYEEAYQRLLEASQ-D-T-----LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ- 174 (252)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-C-T-----TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-
T ss_pred CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-C-c-----cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc-
Confidence 6788999999999999999999999999987 1 0 145567889999999999999999999999999875432
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 005139 552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILE 631 (712)
Q Consensus 552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 631 (712)
..++..+|.++...|++++|+.+|++++... +....++..++.++...|++++|..++++++.+
T Consensus 175 ------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-- 238 (252)
T 2ho1_A 175 ------PSVALEMADLLYKEREYVPARQYYDLFAQGG--------GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL-- 238 (252)
T ss_dssp ------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--
Confidence 4678899999999999999999999998741 122467889999999999999999999999998
Q ss_pred HhcCCCChhhHHHHH
Q 005139 632 QECGPYHPDTLGVYS 646 (712)
Q Consensus 632 ~~~~~~~p~~~~~~~ 646 (712)
.|+...+..
T Consensus 239 ------~p~~~~~~~ 247 (252)
T 2ho1_A 239 ------YPGSLEYQE 247 (252)
T ss_dssp ------CTTSHHHHH
T ss_pred ------CCCCHHHHH
Confidence 666555443
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.78 E-value=5.9e-18 Score=183.05 Aligned_cols=220 Identities=11% Similarity=0.041 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC
Q 005139 328 LMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQF-SEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG 406 (712)
Q Consensus 328 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g 406 (712)
...+++++........ ..+..+.+++.+|.++...|++ ++|+.+|++++++.+.. ..++..+|.+|...|
T Consensus 81 ~~~~~~al~~l~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~--------~~a~~~lg~~~~~~g 151 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLG-SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL--------VEAWNQLGEVYWKKG 151 (474)
T ss_dssp HHHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC--------HHHHHHHHHHHHHcC
Confidence 3334444444433322 2567788999999999999999 99999999999986543 458999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 005139 407 DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSL---------SRYDEAGFAYQKALTAFKTNKGENHPAVASVF 477 (712)
Q Consensus 407 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 477 (712)
++++|+.+|++++. ..|. ..++..+|.++... |++++|+.+|++++++ .|....++
T Consensus 152 ~~~~A~~~~~~al~------~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~ 216 (474)
T 4abn_A 152 DVTSAHTCFSGALT------HCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--------DVLDGRSW 216 (474)
T ss_dssp CHHHHHHHHHHHHT------TCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHH
T ss_pred CHHHHHHHHHHHHh------hCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--------CCCCHHHH
Confidence 99999999999984 3444 58999999999999 9999999999999998 78888999
Q ss_pred HHHHHHHHHc--------CCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005139 478 VRLADMYNRT--------GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (712)
Q Consensus 478 ~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (712)
..+|.+|... |++++|+.+|++++.+... .+....++.++|.+|...|++++|+.+|++++.+.+.
T Consensus 217 ~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 290 (474)
T 4abn_A 217 YILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK------ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA 290 (474)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG------GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC------cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999 9999999999999999321 1156889999999999999999999999999998665
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005139 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNA 584 (712)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 584 (712)
. ..++..++.++...|++++|+..+.+.
T Consensus 291 ~-------~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 291 W-------PEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp C-------HHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred C-------HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4 467889999999999999998876554
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.78 E-value=2.9e-18 Score=185.47 Aligned_cols=235 Identities=14% Similarity=0.102 Sum_probs=196.9
Q ss_pred HHHHHHHHHHHHcCCCHH-------HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCH-hHHHHHHHHhhc
Q 005139 222 PLLLKQARELISSGDNPQ-------KALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQY-NEAIPVLEQSIE 293 (712)
Q Consensus 222 ~~l~~~a~~~~~~g~~~~-------~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~-~~A~~~~~~al~ 293 (712)
..+..+...|+.... .. .....+++++..++..... .+..+.+++.+|.++...|++ ++|+.+|+++++
T Consensus 55 ~~l~~~~~~y~~~~~-~~~~~~~~~~~~~~~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~ 131 (474)
T 4abn_A 55 DRLYCFRDSYFETHS-VEDAGRKQQDVQEEMEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK 131 (474)
T ss_dssp HHHHHHHHTHHHHSC-GGGGGGHHHHHHHHHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 344555555555543 22 4555677777777665332 234578899999999999999 999999999999
Q ss_pred hhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHh---------C
Q 005139 294 IPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQA---------L 364 (712)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g 364 (712)
+. +..+ .++..+|.+|...|++++|+.+|++++++ +|. ..++..+|.++... |
T Consensus 132 ~~-----p~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~-~~~~~~lg~~~~~~~~~~~~~~~g 193 (474)
T 4abn_A 132 LE-----PELV----EAWNQLGEVYWKKGDVTSAHTCFSGALTH--------CKN-KVSLQNLSMVLRQLQTDSGDEHSR 193 (474)
T ss_dssp HC-----TTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------CCC-HHHHHHHHHHHTTCCCSCHHHHHH
T ss_pred hC-----CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCC-HHHHHHHHHHHHHhccCChhhhhh
Confidence 86 4443 35999999999999999999999999988 466 58999999999999 9
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHhCCCCh---hHHH
Q 005139 365 QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK--------GDHEAALEHLVLASMTMIANDQDA---EVAS 433 (712)
Q Consensus 365 ~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~---~~~~ 433 (712)
++++|+.+|++++++.+.. ..++..+|.+|... |++++|+.+|++++.+ .| ....
T Consensus 194 ~~~~A~~~~~~al~~~p~~--------~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~ 259 (474)
T 4abn_A 194 HVMDSVRQAKLAVQMDVLD--------GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV------DRKASSNPD 259 (474)
T ss_dssp HHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH------CGGGGGCHH
T ss_pred hHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh------CCCcccCHH
Confidence 9999999999999986543 34799999999999 9999999999999864 44 6788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005139 434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCEN 499 (712)
Q Consensus 434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 499 (712)
+++++|.+|..+|++++|+.+|++++++ .|....++..++.++...|++++|+..+.+
T Consensus 260 ~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 260 LHLNRATLHKYEESYGEALEGFSQAAAL--------DPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999 788889999999999999999999876644
No 71
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.77 E-value=1.3e-17 Score=155.80 Aligned_cols=171 Identities=17% Similarity=0.194 Sum_probs=154.0
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC
Q 005139 349 VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD 428 (712)
Q Consensus 349 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 428 (712)
...+|+.+|.+|...|++++|+.+|++++++.|.. ..++..+|.+|...|++++|+..+.+++. ..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~~~~~~a~~~~~~~~~------~~ 69 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN--------VETLLKLGKTYMDIGLPNDAIESLKKFVV------LD 69 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHh------cC
Confidence 45789999999999999999999999999987544 45799999999999999999999999874 34
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 005139 429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508 (712)
Q Consensus 429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 508 (712)
+....++..+|.++...++++.|...+.+++.+ .|....++..+|.+|..+|++++|+.+|++++++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~----- 136 (184)
T 3vtx_A 70 TTSAEAYYILGSANFMIDEKQAAIDALQRAIAL--------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI----- 136 (184)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh-----
Confidence 455678889999999999999999999999998 7888889999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139 509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (712)
Q Consensus 509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (712)
.|....++..+|.+|..+|++++|+.+|++++++.++.
T Consensus 137 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 137 ----KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred ----cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 44567889999999999999999999999999987653
No 72
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.77 E-value=6.4e-16 Score=176.07 Aligned_cols=334 Identities=15% Similarity=0.114 Sum_probs=245.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHH
Q 005139 228 ARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAK 307 (712)
Q Consensus 228 a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 307 (712)
|..+...|. +++|..+|+++-. ... .+...+...+++++|+++++++.. +
T Consensus 1056 A~Iai~lgl-yEEAf~IYkKa~~-----------~~~-----A~~VLie~i~nldrAiE~Aervn~----------p--- 1105 (1630)
T 1xi4_A 1056 ANIAISNEL-FEEAFAIFRKFDV-----------NTS-----AVQVLIEHIGNLDRAYEFAERCNE----------P--- 1105 (1630)
T ss_pred HHHHHhCCC-HHHHHHHHHHcCC-----------HHH-----HHHHHHHHHhhHHHHHHHHHhcCC----------H---
Confidence 666777775 7777777777531 111 123334478899999999987522 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCC
Q 005139 308 FAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA 387 (712)
Q Consensus 308 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 387 (712)
.+|+.+|.++...|++++|+..|.++ .....|..+|.++...|+|++|+++|..+.+..+...
T Consensus 1106 -~vWsqLAKAql~~G~~kEAIdsYiKA-------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~--- 1168 (1630)
T 1xi4_A 1106 -AVWSQLAKAQLQKGMVKEAIDSYIKA-------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--- 1168 (1630)
T ss_pred -HHHHHHHHHHHhCCCHHHHHHHHHhc-------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccc---
Confidence 25999999999999999999999775 3346788899999999999999999999988663322
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 005139 388 SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG 467 (712)
Q Consensus 388 ~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 467 (712)
+...+|.+|.+++++++ ++.|.. .+.. ..+..+|..+...|+|++|..+|.++
T Consensus 1169 ------Idt~LafaYAKl~rlee-le~fI~----------~~n~-ad~~~iGd~le~eg~YeeA~~~Y~kA--------- 1221 (1630)
T 1xi4_A 1169 ------VETELIFALAKTNRLAE-LEEFIN----------GPNN-AHIQQVGDRCYDEKMYDAAKLLYNNV--------- 1221 (1630)
T ss_pred ------ccHHHHHHHHhhcCHHH-HHHHHh----------CCCH-HHHHHHHHHHHhcCCHHHHHHHHHhh---------
Confidence 23358999999999885 444421 2222 34557999999999999999999885
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 005139 468 ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547 (712)
Q Consensus 468 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (712)
..|..+|.+|.++|++++|++.+.+|.. ..+|...+.++...|+|..|..+... +...
T Consensus 1222 -------~ny~rLA~tLvkLge~q~AIEaarKA~n--------------~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~ 1279 (1630)
T 1xi4_A 1222 -------SNFGRLASTLVHLGEYQAAVDGARKANS--------------TRTWKEVCFACVDGKEFRLAQMCGLH-IVVH 1279 (1630)
T ss_pred -------hHHHHHHHHHHHhCCHHHHHHHHHHhCC--------------HHHHHHHHHHHhhhhHHHHHHHHHHh-hhcC
Confidence 3678899999999999999999998822 36788999999999999999987764 3222
Q ss_pred HhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH--hCCHHHHHHHHHH
Q 005139 548 NDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ--RYSINEAVELFEE 625 (712)
Q Consensus 548 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~--~g~~~~A~~~~~~ 625 (712)
+ ..+..++..|...|.|++|+.+++.++.+- +.....+..||.+|.+ .++..+++++|..
T Consensus 1280 ~----------deLeeli~yYe~~G~feEAI~LlE~aL~Le--------raH~gmftELaiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1280 A----------DELEELINYYQDRGYFEELITMLEAALGLE--------RAHMGMFTELAILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred H----------HHHHHHHHHHHHcCCHHHHHHHHHHHhccC--------hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2 345578889999999999999999998751 2233566667777664 4567778888887
Q ss_pred HHHHHHHhcCCCCh-----hhHHHHHHHHHHHHHccchhhhC-------------------CCChhHHHHHHHHHHHHHH
Q 005139 626 ARSILEQECGPYHP-----DTLGVYSNLAGTYDAIGREEKLG-------------------TANPDVDDEKRRLAELLKE 681 (712)
Q Consensus 626 al~~~~~~~~~~~p-----~~~~~~~~La~~~~~~g~~~~l~-------------------~~~p~~~~~~~~la~~~~~ 681 (712)
.+.+ .+ +.+..|..+..+|..-|+..... -..+.+++.++.....|..
T Consensus 1342 rini--------~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~ 1413 (1630)
T 1xi4_A 1342 RVNI--------PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE 1413 (1630)
T ss_pred hccc--------chHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHh
Confidence 7765 33 55667788888888877711110 1244556777777777775
Q ss_pred hc
Q 005139 682 AG 683 (712)
Q Consensus 682 ~g 683 (712)
.+
T Consensus 1414 ~~ 1415 (1630)
T 1xi4_A 1414 FK 1415 (1630)
T ss_pred hC
Confidence 55
No 73
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.77 E-value=7.4e-17 Score=155.52 Aligned_cols=207 Identities=16% Similarity=0.075 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCC
Q 005139 307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSP 386 (712)
Q Consensus 307 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 386 (712)
...++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.++++++...+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--- 75 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS--------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS--- 75 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---
Confidence 3456899999999999999999999999988 56667899999999999999999999999999875432
Q ss_pred CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 005139 387 ASLEEAADRRLMGLICETK-GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465 (712)
Q Consensus 387 ~~~~~a~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 465 (712)
..++..+|.++... |++++|+.++++++. .+..+....++..+|.++...|++++|+.++++++..
T Consensus 76 -----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 142 (225)
T 2vq2_A 76 -----AEINNNYGWFLCGRLNRPAESMAYFDKALA----DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---- 142 (225)
T ss_dssp -----HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT----STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred -----hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence 34788999999999 999999999999884 3356677889999999999999999999999999998
Q ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Q 005139 466 KGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALK 545 (712)
Q Consensus 466 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 545 (712)
.|....++..+|.++...|++++|+.++++++..... .....+..++.++...|++++|..+++.+..
T Consensus 143 ----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 143 ----QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEV--------LQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp ----STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6666789999999999999999999999999998530 2345578889999999999999999999887
Q ss_pred HHHh
Q 005139 546 IYND 549 (712)
Q Consensus 546 ~~~~ 549 (712)
..+.
T Consensus 211 ~~p~ 214 (225)
T 2vq2_A 211 NFPY 214 (225)
T ss_dssp HCTT
T ss_pred hCCC
Confidence 6544
No 74
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.77 E-value=6.7e-17 Score=155.78 Aligned_cols=215 Identities=14% Similarity=0.036 Sum_probs=181.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 005139 390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN 469 (712)
Q Consensus 390 ~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 469 (712)
....++..+|.++...|++++|+.+|++++.. .+....++..+|.++...|++++|+.++++++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------- 71 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKS------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI-------- 71 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------
Confidence 44668899999999999999999999999853 3344678899999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Q 005139 470 HPAVASVFVRLADMYNRT-GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN 548 (712)
Q Consensus 470 ~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 548 (712)
.|....++..+|.++... |++++|+.++++++. ... .+....++..+|.++...|++++|+.++++++...+
T Consensus 72 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 144 (225)
T 2vq2_A 72 KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA-DPT------YPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP 144 (225)
T ss_dssp CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STT------CSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcC------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 666778999999999999 999999999999988 111 344577899999999999999999999999998755
Q ss_pred hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005139 549 DAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS 628 (712)
Q Consensus 549 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 628 (712)
.. ..++..+|.++...|++++|+.++++++... +.. ...++..++.++...|++++|..+++.+..
T Consensus 145 ~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 145 QF-------PPAFKELARTKMLAGQLGDADYYFKKYQSRV----EVL---QADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp TC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH----CSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CC-------chHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 43 4678899999999999999999999998863 101 235677888999999999999999999888
Q ss_pred HHHHhcCCCChhhHHHHHH
Q 005139 629 ILEQECGPYHPDTLGVYSN 647 (712)
Q Consensus 629 ~~~~~~~~~~p~~~~~~~~ 647 (712)
. .|+...+...
T Consensus 211 ~--------~p~~~~~~~~ 221 (225)
T 2vq2_A 211 N--------FPYSEELQTV 221 (225)
T ss_dssp H--------CTTCHHHHHH
T ss_pred h--------CCCCHHHHHH
Confidence 7 6665554443
No 75
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.76 E-value=1.3e-17 Score=161.88 Aligned_cols=188 Identities=16% Similarity=0.153 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 005139 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP-AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV 511 (712)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 511 (712)
..++.+|.+++..|++++|+.+|++++.+ .| ....++..+|.++...|++++|+.+|++++.+
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-------- 71 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKL--------TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK-------- 71 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc--------cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------
Confidence 67889999999999999999999999998 43 44567888999999999999999999999987
Q ss_pred CChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 005139 512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAI 591 (712)
Q Consensus 512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 591 (712)
.|....++..+|.+|..+|++++|+.+|++++.+.+.........+.++..+|.++...|++++|+.+|++++++
T Consensus 72 -~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---- 146 (228)
T 4i17_A 72 -NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---- 146 (228)
T ss_dssp -TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----
T ss_pred -CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc----
Confidence 455688899999999999999999999999999866542111234467899999999999999999999999875
Q ss_pred CCCCChH--HHHHHHHHHHHHHHhCCH---------------------------HHHHHHHHHHHHHHHHhcCCCChhhH
Q 005139 592 GERKSAF--FGVALNQMGLACVQRYSI---------------------------NEAVELFEEARSILEQECGPYHPDTL 642 (712)
Q Consensus 592 ~~~~~~~--~~~~~~~lg~~~~~~g~~---------------------------~~A~~~~~~al~~~~~~~~~~~p~~~ 642 (712)
.+. ...++..+|.+|...|+. ++|+.+|++++++ +|+..
T Consensus 147 ----~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l--------~p~~~ 214 (228)
T 4i17_A 147 ----TSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL--------SPNRT 214 (228)
T ss_dssp ----SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CTTCH
T ss_pred ----CCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------CCCCH
Confidence 344 568899999999998888 8899999999988 88888
Q ss_pred HHHHHHHHHHH
Q 005139 643 GVYSNLAGTYD 653 (712)
Q Consensus 643 ~~~~~La~~~~ 653 (712)
.++..++.+..
T Consensus 215 ~~~~~l~~i~~ 225 (228)
T 4i17_A 215 EIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 88887777654
No 76
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.76 E-value=1.3e-17 Score=187.24 Aligned_cols=176 Identities=19% Similarity=0.243 Sum_probs=147.1
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 005139 426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (712)
Q Consensus 426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (712)
+..|..+.+++++|.+|..+|++++|+.+|++++++ .|....++.+||.+|..+|++++|+.+|++++++
T Consensus 3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l-- 72 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI-- 72 (723)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 345777888999999999999999999999999988 7788888999999999999999999999999988
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005139 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAI 585 (712)
Q Consensus 506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 585 (712)
.|..+.++.++|.+|..+|++++|+++|++++++.+.. ..++.++|.+|..+|++++|+.+|++|+
T Consensus 73 -------~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~-------~~a~~~Lg~~~~~~g~~~eAi~~~~~Al 138 (723)
T 4gyw_A 73 -------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF-------ADAHSNLASIHKDSGNIPEAIASYRTAL 138 (723)
T ss_dssp -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45567888999999999999999999999998886554 4688889999999999999999999998
Q ss_pred HHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 005139 586 SKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE 633 (712)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 633 (712)
++ .+....++.++|.++..+|++++|.+.|++++++....
T Consensus 139 ~l--------~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 139 KL--------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp HH--------CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred Hh--------CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 86 12335788889999999999999999999998886554
No 77
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.75 E-value=2.1e-17 Score=185.61 Aligned_cols=174 Identities=18% Similarity=0.266 Sum_probs=160.8
Q ss_pred ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 005139 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN 425 (712)
Q Consensus 346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 425 (712)
.|..+.++.+||.+|..+|++++|+.+|++++++.++. +.++.++|.+|..+|++++|+.+|++++.+
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~--------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---- 72 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF--------AAAHSNLASVLQQQGKLQEALMHYKEAIRI---- 72 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Confidence 68899999999999999999999999999999987543 458999999999999999999999999854
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 005139 426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (712)
Q Consensus 426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (712)
.|..+.+++++|.+|..+|++++|+.+|++++++ .|....++.++|.+|..+|++++|+.+|++++++
T Consensus 73 --~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l-- 140 (723)
T 4gyw_A 73 --SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL-- 140 (723)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 5667889999999999999999999999999999 8888999999999999999999999999999999
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (712)
Q Consensus 506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (712)
.|....++.++|.++..+|++++|++.+++++++.++.
T Consensus 141 -------~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 141 -------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp -------CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred -------CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 45567889999999999999999999999999988753
No 78
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.73 E-value=4.7e-16 Score=154.19 Aligned_cols=223 Identities=15% Similarity=0.140 Sum_probs=177.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 005139 262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQV 341 (712)
Q Consensus 262 ~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 341 (712)
+..+..++.+|..++..|+|++|+..|++++... +.++. ...+++.+|.+|...|++++|+..|++++...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~-~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--- 82 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-----RTHEW-AADAQFYLARAYYQNKEYLLAASEYERFIQIY--- 82 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-----SCSTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCcc-hHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC---
Confidence 3446788999999999999999999999999876 44432 24569999999999999999999999999983
Q ss_pred hCCCChhHHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Q 005139 342 LGETDPRVGETCRYLAEAHVQ--------ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALE 413 (712)
Q Consensus 342 ~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~ 413 (712)
++++....+++.+|.++.. .|++++|+..|++++...+.... +...+..
T Consensus 83 --p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~--------~~~a~~~------------- 139 (261)
T 3qky_A 83 --QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL--------VDDATQK------------- 139 (261)
T ss_dssp --TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT--------HHHHHHH-------------
T ss_pred --CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchh--------HHHHHHH-------------
Confidence 3356788999999999999 99999999999999998766532 1111111
Q ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc------
Q 005139 414 HLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT------ 487 (712)
Q Consensus 414 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~------ 487 (712)
+... .......++.+|.+|...|++++|+..|++++.. .++.+....++..+|.+|..+
T Consensus 140 -~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~l~~~~~~~g~~~~~ 204 (261)
T 3qky_A 140 -IREL---------RAKLARKQYEAARLYERRELYEAAAVTYEAVFDA-----YPDTPWADDALVGAMRAYIAYAEQSVR 204 (261)
T ss_dssp -HHHH---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHHHHTSCG
T ss_pred -HHHH---------HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-----CCCCchHHHHHHHHHHHHHHhcccchh
Confidence 1111 0122345788999999999999999999999987 122334788999999999977
Q ss_pred ----CCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHH
Q 005139 488 ----GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAI 537 (712)
Q Consensus 488 ----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 537 (712)
|++++|+.+|+++++.... ++....+...++.++...++++++.
T Consensus 205 ~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 205 ARQPERYRRAVELYERLLQIFPD------SPLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp GGHHHHHHHHHHHHHHHHHHCTT------CTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred hcccchHHHHHHHHHHHHHHCCC------ChHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999543 5667788888999988888876654
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.72 E-value=2.5e-16 Score=152.62 Aligned_cols=189 Identities=11% Similarity=0.009 Sum_probs=160.5
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 005139 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344 (712)
Q Consensus 265 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 344 (712)
+..++.+|.+++..|++++|+.+|++++.+.+ +.+. .+++.+|.++...|++++|+.+|++++..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~----~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~------- 71 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN----NQDS----VTAYNCGVCADNIKKYKEAADYFDIAIKK------- 71 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT----TCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccC----CCCc----HHHHHHHHHHHHhhcHHHHHHHHHHHHHh-------
Confidence 36788999999999999999999999998862 0332 24777999999999999999999999987
Q ss_pred CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 005139 345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA 424 (712)
Q Consensus 345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 424 (712)
+|....++..+|.+|...|++++|+.++++++.+.+.... .....+.++..+|.++...|++++|+.+|++++
T Consensus 72 -~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al----- 144 (228)
T 4i17_A 72 -NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNAT-IEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT----- 144 (228)
T ss_dssp -TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-----
T ss_pred -CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH-HHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH-----
Confidence 6888999999999999999999999999999998765321 111234579999999999999999999999998
Q ss_pred CCCChh--HHHHHHHHHHHHHHcCCH---------------------------HHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 005139 425 NDQDAE--VASVDCSIGDTYLSLSRY---------------------------DEAGFAYQKALTAFKTNKGENHPAVAS 475 (712)
Q Consensus 425 ~~~~~~--~~~~~~~la~~~~~~g~~---------------------------~~A~~~~~~al~~~~~~~~~~~~~~~~ 475 (712)
...|. ...++.++|.+|...|+. ++|+.+|++++++ .|....
T Consensus 145 -~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l--------~p~~~~ 215 (228)
T 4i17_A 145 -DVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL--------SPNRTE 215 (228)
T ss_dssp -TSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------CTTCHH
T ss_pred -hcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------CCCCHH
Confidence 45777 789999999999999988 8899999999988 666667
Q ss_pred HHHHHHHHH
Q 005139 476 VFVRLADMY 484 (712)
Q Consensus 476 ~~~~la~~~ 484 (712)
++..++.+.
T Consensus 216 ~~~~l~~i~ 224 (228)
T 4i17_A 216 IKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777666654
No 80
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.71 E-value=1e-15 Score=151.69 Aligned_cols=205 Identities=16% Similarity=0.151 Sum_probs=169.2
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 005139 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507 (712)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (712)
.+..+..++.+|..++..|++++|+..|++++.. .++++....+++.+|.+|...|++++|+..|++++.+...
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~- 84 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY-----GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI- 84 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG-----CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC-
Confidence 4455778999999999999999999999999987 2234444899999999999999999999999999999543
Q ss_pred CCCCCChhHHHHHHHHHHHHHH--------cccHHHHHHHHHHHHHHHHhCCCCCCcHHHHH--------------HHHH
Q 005139 508 VPGVPPEEIASGLTDVSSIYES--------MNELEQAIKLLQKALKIYNDAPGQQSTVAGIE--------------AQMG 565 (712)
Q Consensus 508 ~~~~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--------------~~la 565 (712)
.+....+++.+|.++.. .|++++|+..|++++...+... ....++ +.+|
T Consensus 85 -----~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~a~~~~~~~~~~~~~~~~~la 155 (261)
T 3qky_A 85 -----DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE----LVDDATQKIRELRAKLARKQYEAA 155 (261)
T ss_dssp -----CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT----THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567889999999999 9999999999999999876542 222233 7899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHh----------CCHHHHHHHHHHHHHHHHHhcC
Q 005139 566 VMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR----------YSINEAVELFEEARSILEQECG 635 (712)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~----------g~~~~A~~~~~~al~~~~~~~~ 635 (712)
.+|...|++++|+..|++++... +..+....++..+|.+|..+ |++++|+.+|++++.. .
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~-----~ 225 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAY-----PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI-----F 225 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH-----C
T ss_pred HHHHHccCHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH-----C
Confidence 99999999999999999999863 22333567999999999977 9999999999999987 2
Q ss_pred CCChhhHHHHHHHHHHHHHccc
Q 005139 636 PYHPDTLGVYSNLAGTYDAIGR 657 (712)
Q Consensus 636 ~~~p~~~~~~~~La~~~~~~g~ 657 (712)
|++|....+...++.++..+++
T Consensus 226 p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 226 PDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp TTCTHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHH
Confidence 4455556777777777777766
No 81
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.70 E-value=9.8e-16 Score=155.92 Aligned_cols=257 Identities=12% Similarity=0.023 Sum_probs=197.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHHHHHhCCCChhHH
Q 005139 367 SEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET-------KGDH-------EAALEHLVLASMTMIANDQDAEVA 432 (712)
Q Consensus 367 ~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~~~~~~~~~~~~~ 432 (712)
++|+..|++++...+.. ..+|..+|.++.. .|++ ++|+..|++|+.. ..|...
T Consensus 33 ~~a~~~~~~al~~~p~~--------~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-----~~p~~~ 99 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHH--------PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-----LLKKNM 99 (308)
T ss_dssp HHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-----TTTTCH
T ss_pred HHHHHHHHHHHHHcCCC--------HHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-----hCcccH
Confidence 78999999999988654 3478888888763 5885 8999999999831 256667
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 005139 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVAS-VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV 511 (712)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 511 (712)
.++..+|.++...|++++|...|++++.+ .|.... +|..+|.++...|++++|+.+|+++++...
T Consensus 100 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p------ 165 (308)
T 2ond_A 100 LLYFAYADYEESRMKYEKVHSIYNRLLAI--------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR------ 165 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC------
Confidence 88999999999999999999999999986 444444 899999999999999999999999998632
Q ss_pred CChhHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 005139 512 PPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA 590 (712)
Q Consensus 512 ~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 590 (712)
....++...+.+... .|++++|+.+|++++...+.. ..++..+|.++...|++++|+.+|++++...
T Consensus 166 ---~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-- 233 (308)
T 2ond_A 166 ---TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI-------PEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-- 233 (308)
T ss_dssp ---CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS--
T ss_pred ---CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc--
Confidence 123445555555433 799999999999999998754 4688899999999999999999999998731
Q ss_pred hCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccchhhhCCCChhHHH
Q 005139 591 IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGREEKLGTANPDVDD 670 (712)
Q Consensus 591 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~l~~~~p~~~~ 670 (712)
...+.....++..++.++...|++++|..+++++++. .|+..... .++.+.. ...+....|+++.
T Consensus 234 --~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~--------~p~~~~~~-~~~~~~~----r~~~l~~~P~~~~ 298 (308)
T 2ond_A 234 --SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA--------FREEYEGK-ETALLVD----RYKFMDLYPCSAS 298 (308)
T ss_dssp --SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--------TTTTTSSC-HHHHHHT----TTCBTTBCSSCHH
T ss_pred --CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------cccccccc-hHHHHHH----HHHhcccCCCCHH
Confidence 0011123468888999999999999999999999998 55422211 1122211 2234457788887
Q ss_pred HHHHHHH
Q 005139 671 EKRRLAE 677 (712)
Q Consensus 671 ~~~~la~ 677 (712)
++..||.
T Consensus 299 ~ln~lgY 305 (308)
T 2ond_A 299 ELKALGY 305 (308)
T ss_dssp HHHTTTC
T ss_pred HHHhcCC
Confidence 7776653
No 82
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.4e-14 Score=155.12 Aligned_cols=240 Identities=18% Similarity=0.167 Sum_probs=205.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCC---------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139 353 CRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPA---------SLEEAADRRLMGLICETKGDHEAALEHLVLASMTMI 423 (712)
Q Consensus 353 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---------~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 423 (712)
....|..+...|+|++|++.|.++++..+...... ......++..+|.+|...|++++|++++.+++....
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 44567778899999999999999998776554321 123345788999999999999999999999998887
Q ss_pred hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139 424 ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (712)
Q Consensus 424 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (712)
..+.......+...++.++...|++++|+.++++++.+..... +.+..+.++..+|.+|...|+|.+|..++++++..
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK--RVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS--CCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 7665556667788899999999999999999999999988765 35567889999999999999999999999999998
Q ss_pred HhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005139 504 YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN 583 (712)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 583 (712)
... ..+.+..+.++..++.+|...|++++|..++++++.+...........+.++..+|.++...|+|.+|..+|.+
T Consensus 165 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 165 FKK---LDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp HTT---SSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHh---cccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 877 34567788999999999999999999999999999999887554456678889999999999999999999999
Q ss_pred HHHHHHHhCCCCCh
Q 005139 584 AISKLRAIGERKSA 597 (712)
Q Consensus 584 al~~~~~~~~~~~~ 597 (712)
++..+...+.....
T Consensus 242 a~~~~~~~~~~~~~ 255 (434)
T 4b4t_Q 242 SFESYHNLTTHNSY 255 (434)
T ss_dssp HHHHHHHTTTSSCH
T ss_pred HHHHhhhhhhhhhH
Confidence 99998887765544
No 83
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.69 E-value=3.7e-15 Score=141.20 Aligned_cols=194 Identities=13% Similarity=0.122 Sum_probs=160.6
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005139 403 ETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLAD 482 (712)
Q Consensus 403 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 482 (712)
...|++++|...++... +++...+.++..+|.++...|++++|+.++++++.++.... +.+....++..+|.
T Consensus 3 ~~~g~~~~A~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~ 74 (203)
T 3gw4_A 3 FEAHDYALAERQAQALL------AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG--DHTAEHRALHQVGM 74 (203)
T ss_dssp ----CHHHHHHHHHHHH------TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhc------CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHH
Confidence 46799999999554432 35557789999999999999999999999999999988764 36778899999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHH
Q 005139 483 MYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEA 562 (712)
Q Consensus 483 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 562 (712)
++...|++++|+.++++++.+.... ++.......++..+|.++...|++++|+.++++++.+.+.. +.....+.++.
T Consensus 75 ~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~ 151 (203)
T 3gw4_A 75 VERMAGNWDAARRCFLEERELLASL--PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA-DDQVAIACAFR 151 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHc--CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc-cchHHHHHHHH
Confidence 9999999999999999999998863 32344678899999999999999999999999999998776 55556677889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 005139 563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLA 609 (712)
Q Consensus 563 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~ 609 (712)
.+|.++...|++++|..++++++.+.+..++. ...+.++..++.+
T Consensus 152 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~~~ 196 (203)
T 3gw4_A 152 GLGDLAQQEKNLLEAQQHWLRARDIFAELEDS--EAVNELMTRLNGL 196 (203)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH--HHHHHHHhcccch
Confidence 99999999999999999999999999887654 3344555555543
No 84
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.68 E-value=2.8e-15 Score=152.54 Aligned_cols=225 Identities=8% Similarity=0.030 Sum_probs=184.3
Q ss_pred hHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-HHHHHhCCCC
Q 005139 282 NEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAM-------LGQL-------ENSLMCYTTGLE-VQKQVLGETD 346 (712)
Q Consensus 282 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~-------~g~~-------~~A~~~~~~al~-~~~~~~~~~~ 346 (712)
++|+..|++++... +.++. +|+.+|.++.. .|++ ++|+..|++++. + +
T Consensus 33 ~~a~~~~~~al~~~-----p~~~~----~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~--------~ 95 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-----GHHPD----IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--------L 95 (308)
T ss_dssp HHHHHHHHHHHHHH-----TTCHH----HHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT--------T
T ss_pred HHHHHHHHHHHHHc-----CCCHH----HHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh--------C
Confidence 78999999999886 55544 48888888764 5886 899999999998 5 5
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 005139 347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND 426 (712)
Q Consensus 347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 426 (712)
|....+|..+|.++...|++++|...|++++.+.+... . .++..+|.++...|++++|+..|++++.
T Consensus 96 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~------ 162 (308)
T 2ond_A 96 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP-----T--LVYIQYMKFARRAEGIKSGRMIFKKARE------ 162 (308)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT-----H--HHHHHHHHHHHHHHCHHHHHHHHHHHHT------
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCc-----c--HHHHHHHHHHHHhcCHHHHHHHHHHHHh------
Confidence 77788999999999999999999999999998643321 1 2688999999999999999999999984
Q ss_pred CChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 005139 427 QDAEVASVDCSIGDTYLS-LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (712)
Q Consensus 427 ~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (712)
..+....++...+.+... .|++++|+.+|+++++. .|....++..++.++...|++++|+.+|++++....
T Consensus 163 ~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~ 234 (308)
T 2ond_A 163 DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--------YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred cCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC
Confidence 223334555555555433 79999999999999998 566688999999999999999999999999998521
Q ss_pred cCCCCCCCh-hHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139 506 KPVPGVPPE-EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (712)
Q Consensus 506 ~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (712)
.+| ....+|..++.++...|+++.|..+++++++..++.
T Consensus 235 ------l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 235 ------LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp ------SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred ------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 022 246678899999999999999999999999998765
No 85
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.67 E-value=5.6e-15 Score=139.92 Aligned_cols=195 Identities=12% Similarity=0.146 Sum_probs=157.2
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHH
Q 005139 442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT 521 (712)
Q Consensus 442 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 521 (712)
.+..|++++|...++.... +......++..+|.++...|++++|+.++++++.++... ...+..+.++.
T Consensus 2 ~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~ 70 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA--------HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS---GDHTAEHRALH 70 (203)
T ss_dssp -----CHHHHHHHHHHHHT--------STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT---CCHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcC--------ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc---CCcHHHHHHHH
Confidence 3567999999985544322 244678999999999999999999999999999998873 34667889999
Q ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHH
Q 005139 522 DVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGV 601 (712)
Q Consensus 522 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 601 (712)
.+|.++...|++++|+.++++++.+.............++..+|.++...|++++|+.++++++.+.+..+.. ...+.
T Consensus 71 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~ 148 (203)
T 3gw4_A 71 QVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQ--VAIAC 148 (203)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH--HHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccch--HHHHH
Confidence 9999999999999999999999999987632333677889999999999999999999999999998776543 44567
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 005139 602 ALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGT 651 (712)
Q Consensus 602 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~ 651 (712)
++..+|.++...|++++|+.+|++++.+.+.... ......++..++.+
T Consensus 149 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~~~ 196 (203)
T 3gw4_A 149 AFRGLGDLAQQEKNLLEAQQHWLRARDIFAELED--SEAVNELMTRLNGL 196 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC--HHHHHHHHhcccch
Confidence 8899999999999999999999999999877532 23344455555443
No 86
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.67 E-value=3.9e-14 Score=151.57 Aligned_cols=241 Identities=10% Similarity=0.043 Sum_probs=199.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC-----------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139 395 RRLMGLICETKGDHEAALEHLVLASMTMIANDQD-----------AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK 463 (712)
Q Consensus 395 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 463 (712)
....|..+...|+|++|++.|.+++.......+. .....++..+|.+|...|++++|+.++.+++.+..
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4556778889999999999999988644332221 23445789999999999999999999999999877
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHH
Q 005139 464 TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA 543 (712)
Q Consensus 464 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 543 (712)
... .......+...++.++...|++++|+.++++++.+.... ......+.++..+|.+|...|+|++|+.+++++
T Consensus 87 ~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 161 (434)
T 4b4t_Q 87 QFA--KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE---KRVFLKHSLSIKLATLHYQKKQYKDSLALINDL 161 (434)
T ss_dssp TSC--HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS---SCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred Hcc--chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHccChHHHHHHHHHH
Confidence 652 123345677788999999999999999999999998874 234556889999999999999999999999999
Q ss_pred HHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 005139 544 LKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELF 623 (712)
Q Consensus 544 l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 623 (712)
+...... ++......++..+|.+|...|++++|..++++++.+....... +...+..+..+|.++...|++.+|..+|
T Consensus 162 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~y~~A~~~~ 239 (434)
T 4b4t_Q 162 LREFKKL-DDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCP-TQTVAELDLMSGILHCEDKDYKTAFSYF 239 (434)
T ss_dssp HHHHTTS-SCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHhc-ccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9988776 5667788899999999999999999999999999988776543 3445788899999999999999999999
Q ss_pred HHHHHHHHHhcCCCChhhH
Q 005139 624 EEARSILEQECGPYHPDTL 642 (712)
Q Consensus 624 ~~al~~~~~~~~~~~p~~~ 642 (712)
.+++..+.......+...+
T Consensus 240 ~~a~~~~~~~~~~~~~~~~ 258 (434)
T 4b4t_Q 240 FESFESYHNLTTHNSYEKA 258 (434)
T ss_dssp HHHHHHHHHTTTSSCHHHH
T ss_pred HHHHHHhhhhhhhhhHHHH
Confidence 9999998877665544433
No 87
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.66 E-value=5.1e-15 Score=149.44 Aligned_cols=195 Identities=12% Similarity=0.022 Sum_probs=159.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 005139 394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAV 473 (712)
Q Consensus 394 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 473 (712)
.+...+..+...|++++|+..+.+++...............++.+|.++...|++++|+.++++++.+..... +....
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~ 154 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI--DVYQN 154 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS--CTTHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC--chHHH
Confidence 4566788899999999999999988764322222223455677899999999999999999999998744322 23445
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCC
Q 005139 474 ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ 553 (712)
Q Consensus 474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 553 (712)
+.++..+|.+|...|++++|+.+|++++.+.... +........++.++|.+|..+|++++|+.++++++.+.... +.
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~--~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~-~~ 231 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI-NS 231 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TB
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc-Cc
Confidence 7799999999999999999999999999887763 22222234789999999999999999999999999998764 55
Q ss_pred CCcHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHhCC
Q 005139 554 QSTVAGIEAQMGVMYYMLGNYSDS-YDSFKNAISKLRAIGE 593 (712)
Q Consensus 554 ~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~~~ 593 (712)
....+.++..+|.+|..+|++++| ..+|++|+.+++..+.
T Consensus 232 ~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~ 272 (293)
T 2qfc_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCc
Confidence 667788999999999999999999 8889999998877654
No 88
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.66 E-value=5.6e-15 Score=149.12 Aligned_cols=194 Identities=12% Similarity=0.049 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChh---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 005139 393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE---VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN 469 (712)
Q Consensus 393 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 469 (712)
..+...+..+...|++++|+..+++++.. ....+. ....+..+|.++...+++++|+.+|++++.+.... .+
T Consensus 76 ~~l~~~i~~~~~~~~y~~a~~~~~~~l~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~--~~ 150 (293)
T 3u3w_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKK---EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG--ID 150 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCC--SC
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhcc---ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccc--cc
Confidence 34455677888999999999999998742 122222 24456679999999999999999999999853322 12
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005139 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (712)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (712)
....+.++.++|.+|...|++++|+.+|++++.+.... +...+..+.++.++|.+|..+|++++|+.++++++.+.+.
T Consensus 151 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34457789999999999999999999999999988774 2456778889999999999999999999999999999988
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhCCC
Q 005139 550 APGQQSTVAGIEAQMGVMYYMLGN-YSDSYDSFKNAISKLRAIGER 594 (712)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~ 594 (712)
. +.....+.++..+|.+|..+|+ +++|+.+|++|+.+++..+..
T Consensus 229 ~-~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~~ 273 (293)
T 3u3w_A 229 I-NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMH 273 (293)
T ss_dssp T-TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCT
T ss_pred c-CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence 7 6666778899999999999995 699999999999999887654
No 89
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.65 E-value=2.4e-14 Score=144.49 Aligned_cols=198 Identities=11% Similarity=-0.032 Sum_probs=162.5
Q ss_pred HHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 005139 263 ELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVL 342 (712)
Q Consensus 263 ~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 342 (712)
.....+...+..+...|+|++|+..+.++++.... .......+..++.+|.++...|++++|+.+|++++.+...
T Consensus 73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-- 147 (293)
T 2qfc_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY---HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT-- 147 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC---CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCC--
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC---ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc--
Confidence 34456667888999999999999999999887532 1111223445778999999999999999999999976432
Q ss_pred CCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139 343 GETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTM 422 (712)
Q Consensus 343 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 422 (712)
..+....+.++..+|.+|...|++++|+.+|++++.+....... ....+.+++++|.+|..+|++++|+.++++++.+.
T Consensus 148 ~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~-~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 148 GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN-EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp SSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc-ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 12233457799999999999999999999999999988776532 22233689999999999999999999999999988
Q ss_pred HhCCCChhHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHhc
Q 005139 423 IANDQDAEVASVDCSIGDTYLSLSRYDEA-GFAYQKALTAFKTNK 466 (712)
Q Consensus 423 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~~ 466 (712)
...++....+.+++++|.+|..+|++++| ..+|++|+.+++...
T Consensus 227 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~ 271 (293)
T 2qfc_A 227 CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE 271 (293)
T ss_dssp HHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhC
Confidence 77777777899999999999999999999 888999999987764
No 90
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.65 E-value=1.5e-14 Score=146.02 Aligned_cols=197 Identities=12% Similarity=-0.017 Sum_probs=164.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139 262 LELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALA--KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQK 339 (712)
Q Consensus 262 ~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 339 (712)
......+...+..++..|+|++|+.++++++... +..+.. .+..+..+|.++...|++++|+.+|++++.+..
T Consensus 72 ~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~ 146 (293)
T 3u3w_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-----EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL 146 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCC
T ss_pred chhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc-----cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhc
Confidence 4445556666888999999999999999998864 222221 233456799999999999999999999998532
Q ss_pred HHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005139 340 QVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLAS 419 (712)
Q Consensus 340 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al 419 (712)
. ..+......++..+|.+|...|++++|+.+|++++........ .....+.+++++|.+|..+|++++|+.++++++
T Consensus 147 ~--~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 147 T--GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp C--CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred c--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2 1222345678999999999999999999999999998877633 556777899999999999999999999999999
Q ss_pred HHHHhCCCChhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhc
Q 005139 420 MTMIANDQDAEVASVDCSIGDTYLSLSR-YDEAGFAYQKALTAFKTNK 466 (712)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~ 466 (712)
.+....++....+.+++++|.+|..+|+ +++|+.+|++|+.+++...
T Consensus 224 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~ 271 (293)
T 3u3w_A 224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE 271 (293)
T ss_dssp HHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 9998888888899999999999999995 7999999999999988764
No 91
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.64 E-value=1.2e-14 Score=138.59 Aligned_cols=165 Identities=12% Similarity=0.132 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH----------------HHHHHHHcCCHHHHHH
Q 005139 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVR----------------LADMYNRTGKLRESKS 495 (712)
Q Consensus 432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~ 495 (712)
+..+...|..++..|++++|+.+|++++.+ .|....++.. +|.+|...|++++|+.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 345677899999999999999999999998 8888888988 9999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCH-
Q 005139 496 YCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNY- 574 (712)
Q Consensus 496 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~- 574 (712)
+|++++++ .|....++..+|.++...|++++|+.+|++++++.+.. ..++..+|.+|+..|+.
T Consensus 76 ~~~~al~~---------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-------~~a~~~lg~~~~~~~~~~ 139 (208)
T 3urz_A 76 FYKELLQK---------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN-------LAANIFLGNYYYLTAEQE 139 (208)
T ss_dssp HHHHHHHH---------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHHhHHH
Confidence 99999999 45567889999999999999999999999999987655 46889999999877643
Q ss_pred -HHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139 575 -SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (712)
Q Consensus 575 -~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 629 (712)
..+...|.+++. .. ....+++.+|.++...|++++|+.+|++++++
T Consensus 140 ~~~~~~~~~~~~~-------~~--~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 140 KKKLETDYKKLSS-------PT--KMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHC---C-------CC--HHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhC-------CC--chhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 445555555432 22 22356788899999999999999999999998
No 92
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.63 E-value=8e-15 Score=136.25 Aligned_cols=170 Identities=20% Similarity=0.202 Sum_probs=131.0
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 005139 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507 (712)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (712)
......++..+|.++...|++++|+.++++++.. .|....++..+|.++...|++++|+.++++++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--- 72 (186)
T 3as5_A 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDA--------DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--- 72 (186)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred cchhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---
Confidence 3455667778888888888888888888887765 45556778888888888888888888888888772
Q ss_pred CCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139 508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587 (712)
Q Consensus 508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 587 (712)
+....++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++..
T Consensus 73 ------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 139 (186)
T 3as5_A 73 ------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN-------FNVRFRLGVALDNLGRFDEAIDSFKIALGL 139 (186)
T ss_dssp ------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHh-------HHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Confidence 2345677888888888888888888888888774432 356778888888888888888888888775
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139 588 LRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (712)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 629 (712)
. +....++..+|.++...|++++|+.+|++++.+
T Consensus 140 ~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 140 R--------PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp C--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C--------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 2 112467788888888888888888888888876
No 93
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.62 E-value=2.6e-14 Score=132.67 Aligned_cols=169 Identities=16% Similarity=0.145 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 005139 391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH 470 (712)
Q Consensus 391 ~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 470 (712)
.+..+..+|.++...|++++|+.++++++ ...+....++..+|.++...|++++|+.++++++.. .
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~ 72 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVY------DADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--------A 72 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTC------CTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHH------HhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------C
Confidence 35578899999999999999999999886 334555788999999999999999999999999998 6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139 471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (712)
Q Consensus 471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (712)
|....++..+|.++...|++++|+.++++++... +....++..+|.++...|++++|+.++++++...+..
T Consensus 73 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 143 (186)
T 3as5_A 73 PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN---------PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143 (186)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---------cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc
Confidence 6677899999999999999999999999999983 3346788999999999999999999999999875433
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139 551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR 589 (712)
Q Consensus 551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 589 (712)
..++..+|.++...|++++|..++++++.+..
T Consensus 144 -------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 144 -------GKVHRAIAFSYEQMGRHEEALPHFKKANELDE 175 (186)
T ss_dssp -------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 46888999999999999999999999998753
No 94
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.61 E-value=6.2e-16 Score=159.05 Aligned_cols=321 Identities=14% Similarity=0.112 Sum_probs=150.6
Q ss_pred HcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHH
Q 005139 233 SSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHM 312 (712)
Q Consensus 233 ~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 312 (712)
..|+ .++|.+++++. ++ ..++..||.++...|++++|++.|.++- + ...+.
T Consensus 15 ~~~~-ld~A~~fae~~-----------~~---~~vWs~La~A~l~~g~~~eAIdsfika~----------D----~~~y~ 65 (449)
T 1b89_A 15 HIGN-LDRAYEFAERC-----------NE---PAVWSQLAKAQLQKGMVKEAIDSYIKAD----------D----PSSYM 65 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccC-HHHHHHHHHhC-----------CC---hHHHHHHHHHHHHcCCHHHHHHHHHcCC----------C----HHHHH
Confidence 3443 77777777765 11 2378889999999999999999997642 1 12478
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHH
Q 005139 313 QLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEA 392 (712)
Q Consensus 313 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a 392 (712)
.++..+...|++++|+.+++.+++.. +. ..+...++.+|.+.|++.++.++++. +. .
T Consensus 66 ~V~~~ae~~g~~EeAi~yl~~ark~~--------~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~----------pn----~ 122 (449)
T 1b89_A 66 EVVQAANTSGNWEELVKYLQMARKKA--------RE-SYVETELIFALAKTNRLAELEEFING----------PN----N 122 (449)
T ss_dssp ----------------------------------------------------CHHHHTTTTTC----------C------
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhC--------cc-chhHHHHHHHHHHhCCHHHHHHHHcC----------Cc----H
Confidence 88999999999999999999887751 22 45677899999999999999988752 11 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH
Q 005139 393 ADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA 472 (712)
Q Consensus 393 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 472 (712)
.++..+|..+...|.|++|..+|.++ ..+..+|.++..+|+|++|++.++++. .
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------------~n~~~LA~~L~~Lg~yq~AVea~~KA~----------~-- 176 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKAN----------S-- 176 (449)
T ss_dssp --------------CTTTHHHHHHHT--------------TCHHHHHHHHHTTTCHHHHHHHHHHHT----------C--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh--------------hhHHHHHHHHHHhccHHHHHHHHHHcC----------C--
Confidence 27999999999999999999999865 357889999999999999999999982 2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCC
Q 005139 473 VASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG 552 (712)
Q Consensus 473 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 552 (712)
+.+|..++.++...|+++.|..+....+ . +++. +..+..+|...|++++|+.++++++.+.+..
T Consensus 177 -~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~---------~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah-- 240 (449)
T 1b89_A 177 -TRTWKEVCFACVDGKEFRLAQMCGLHIV-V---------HADE---LEELINYYQDRGYFEELITMLEAALGLERAH-- 240 (449)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHTTTTTT-T---------CHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC--
T ss_pred -chhHHHHHHHHHHcCcHHHHHHHHHHHH-h---------CHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHH--
Confidence 4688889999999999999976665411 1 3333 4468899999999999999999998764332
Q ss_pred CCCcHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--
Q 005139 553 QQSTVAGIEAQMGVMYYM--LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS-- 628 (712)
Q Consensus 553 ~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-- 628 (712)
..++..+|.+|.+ .++..+.++.|...+.+-+-+..- ..+..|..+..+|...++++.|+...-+...
T Consensus 241 -----~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~---~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a 312 (449)
T 1b89_A 241 -----MGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAA---EQAHLWAELVFLYDKYEEYDNAIITMMNHPTDA 312 (449)
T ss_dssp -----HHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHH---HTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTT
T ss_pred -----HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHH---HHHHHHHHHHHHHHhhchHHHHHHHHHhCChhh
Confidence 4567777777765 456777777776655543211000 1124678889999999999999875444311
Q ss_pred ----HHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005139 629 ----ILEQECGPYHPDTLGVYSNLAGTYDAIGR 657 (712)
Q Consensus 629 ----~~~~~~~~~~p~~~~~~~~La~~~~~~g~ 657 (712)
.+..+.. .+.+++.++.....|.....
T Consensus 313 ~~~~~f~~~~~--kv~n~elyYkai~fyl~~~p 343 (449)
T 1b89_A 313 WKEGQFKDIIT--KVANVELYYRAIQFYLEFKP 343 (449)
T ss_dssp CCHHHHHHHHH--HCSSTHHHHHHHHHHHHHCG
T ss_pred hhhHHHHHHHh--chhHHHHHHHHHHHHHhcCH
Confidence 1222211 34557778888888774433
No 95
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.60 E-value=2.2e-15 Score=135.20 Aligned_cols=147 Identities=10% Similarity=0.101 Sum_probs=126.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 005139 397 LMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASV 476 (712)
Q Consensus 397 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 476 (712)
.||.++...|++++|+..+++++ ...|.....++.+|.+|+..|++++|+.+|++++++ .|....+
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~------~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~~a 67 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGST------PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDPKA 67 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHS------CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhc------ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHH
Confidence 47888899999999999999887 567788888999999999999999999999999999 8888999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHH-HHHHHHHHHhCCCCCC
Q 005139 477 FVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKL-LQKALKIYNDAPGQQS 555 (712)
Q Consensus 477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~~ 555 (712)
+..+|.+|...|++++|+.+|++++++ .|....++..+|.+|...|++++|... +++++++.|..
T Consensus 68 ~~~lg~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~----- 133 (150)
T 4ga2_A 68 HRFLGLLYELEENTDKAVECYRRSVEL---------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS----- 133 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC-----
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC-----
Confidence 999999999999999999999999999 455678899999999999999887765 69999997765
Q ss_pred cHHHHHHHHHHHHHHcCC
Q 005139 556 TVAGIEAQMGVMYYMLGN 573 (712)
Q Consensus 556 ~~~~~~~~la~~~~~~g~ 573 (712)
..++..++.++...|+
T Consensus 134 --~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 134 --PAVYKLKEQLLDCEGE 149 (150)
T ss_dssp --HHHHHHHHHHHHTCCC
T ss_pred --HHHHHHHHHHHHHhCc
Confidence 3577778888887775
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.60 E-value=3.5e-14 Score=135.23 Aligned_cols=161 Identities=16% Similarity=0.144 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHH----------------HHHHHHHcCCHHHHHHH
Q 005139 517 ASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQ----------------MGVMYYMLGNYSDSYDS 580 (712)
Q Consensus 517 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~~ 580 (712)
+..+...|..+...|++++|+.+|++++.+.+.. ..+++. +|.+|...|++++|+..
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 76 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR-------TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLF 76 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHH-------HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4567889999999999999999999999987764 346666 99999999999999999
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc---
Q 005139 581 FKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR--- 657 (712)
Q Consensus 581 ~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~--- 657 (712)
|++++++ .+....++..+|.++...|++++|+.+|++++++ +|+...+++++|.+|...|+
T Consensus 77 ~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~ 140 (208)
T 3urz_A 77 YKELLQK--------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--------EADNLAANIFLGNYYYLTAEQEK 140 (208)
T ss_dssp HHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHhHHHH
Confidence 9999987 2334589999999999999999999999999999 99999999999999988775
Q ss_pred ------hhhhCCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005139 658 ------EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 702 (712)
Q Consensus 658 ------~~~l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~ 702 (712)
...+....| ...+++.+|.++...|++++|+ ..|+++++.+|+
T Consensus 141 ~~~~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~-~~~~~al~l~P~ 189 (208)
T 3urz_A 141 KKLETDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKAR-NSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHC---CCCH-HHHHHHHHHHHHHHHHTHHHHH-HHHHHHTTTSCC
T ss_pred HHHHHHHHHHhCCCc-hhHHHHHHHHHHHHccCHHHHH-HHHHHHHHhCCC
Confidence 222322233 3346788999999999999999 999999999997
No 97
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.60 E-value=6.7e-16 Score=158.84 Aligned_cols=278 Identities=15% Similarity=0.083 Sum_probs=129.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 005139 316 DTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADR 395 (712)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~ 395 (712)
.+....|++++|..++++. . +| .+|..||.++...|++++|++.|.++-. ...+
T Consensus 11 ~ll~~~~~ld~A~~fae~~-~---------~~---~vWs~La~A~l~~g~~~eAIdsfika~D-------------~~~y 64 (449)
T 1b89_A 11 VLIEHIGNLDRAYEFAERC-N---------EP---AVWSQLAKAQLQKGMVKEAIDSYIKADD-------------PSSY 64 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHccCHHHHHHHHHhC-C---------Ch---HHHHHHHHHHHHcCCHHHHHHHHHcCCC-------------HHHH
Confidence 3445678889999988886 1 23 4899999999999999999999977421 1257
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 005139 396 RLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVAS 475 (712)
Q Consensus 396 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 475 (712)
..++..+...|++++|+.+++.+++. .+. +.+...++.+|.+.|++.++..+++. |. ..
T Consensus 65 ~~V~~~ae~~g~~EeAi~yl~~ark~------~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~~-------------pn-~~ 123 (449)
T 1b89_A 65 MEVVQAANTSGNWEELVKYLQMARKK------ARE-SYVETELIFALAKTNRLAELEEFING-------------PN-NA 123 (449)
T ss_dssp ---------------------------------------------------CHHHHTTTTTC-------------C----
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHh------Ccc-chhHHHHHHHHHHhCCHHHHHHHHcC-------------Cc-HH
Confidence 78888999999999999999888642 122 46677889999999999999877742 22 24
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCC
Q 005139 476 VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS 555 (712)
Q Consensus 476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 555 (712)
++..+|..+...|+|++|..+|.++ ..+..+|.++..+|++++|++.++++..
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a-----------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~---------- 176 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV-----------------SNFGRLASTLVHLGEYQAAVDGARKANS---------- 176 (449)
T ss_dssp -------------CTTTHHHHHHHT-----------------TCHHHHHHHHHTTTCHHHHHHHHHHHTC----------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-----------------hhHHHHHHHHHHhccHHHHHHHHHHcCC----------
Confidence 9999999999999999999999966 1378999999999999999999999921
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 005139 556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG 635 (712)
Q Consensus 556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 635 (712)
..+|..++.++...|+++.|..+....+ .+ + .-+..+..+|...|++++|+.++++++.+
T Consensus 177 --~~~Wk~v~~aCv~~~ef~lA~~~~l~L~--------~~-a---d~l~~lv~~Yek~G~~eEai~lLe~aL~l------ 236 (449)
T 1b89_A 177 --TRTWKEVCFACVDGKEFRLAQMCGLHIV--------VH-A---DELEELINYYQDRGYFEELITMLEAALGL------ 236 (449)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHTTTTTT--------TC-H---HHHHHHHHHHHHTTCHHHHHHHHHHHTTS------
T ss_pred --chhHHHHHHHHHHcCcHHHHHHHHHHHH--------hC-H---hhHHHHHHHHHHCCCHHHHHHHHHHHhCC------
Confidence 2578888999999999999966655411 12 2 22446888999999999999999999988
Q ss_pred CCChhhHHHHHHHHHHHHHccc---------hhhhCCCCh-----hHHHHHHHHHHHHHHhccHHHHH
Q 005139 636 PYHPDTLGVYSNLAGTYDAIGR---------EEKLGTANP-----DVDDEKRRLAELLKEAGRVRSRK 689 (712)
Q Consensus 636 ~~~p~~~~~~~~La~~~~~~g~---------~~~l~~~~p-----~~~~~~~~la~~~~~~g~~~~A~ 689 (712)
++....++..||.+|.+-.- +.......| +.+..|..+..+|...|+++.|.
T Consensus 237 --e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 237 --ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp --TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred --cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 67778889999999886654 111122333 34556889999999999999998
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.60 E-value=6.8e-15 Score=166.24 Aligned_cols=202 Identities=12% Similarity=-0.018 Sum_probs=166.7
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 005139 319 AMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLM 398 (712)
Q Consensus 319 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~l 398 (712)
...|++++|+..|++++...-......+|....++..+|.++...|++++|+..|++++++.+.. ..+++.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--------~~a~~~l 473 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR--------WRLVWYR 473 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC--------HHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch--------HHHHHHH
Confidence 77899999999999998211111112267788899999999999999999999999999987654 4489999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 005139 399 GLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFV 478 (712)
Q Consensus 399 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 478 (712)
|.++...|++++|+..|++++.+ .|....++.++|.++..+|++++ +.+|++++++ +|....+++
T Consensus 474 g~~~~~~g~~~~A~~~~~~al~l------~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--------~P~~~~a~~ 538 (681)
T 2pzi_A 474 AVAELLTGDYDSATKHFTEVLDT------FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--------NDGVISAAF 538 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH------STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--------CTTCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--------CCchHHHHH
Confidence 99999999999999999999853 45557889999999999999999 9999999999 888889999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHH-HHHHHHHHHHHHhCCC
Q 005139 479 RLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQA-IKLLQKALKIYNDAPG 552 (712)
Q Consensus 479 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~~~ 552 (712)
++|.++..+|++++|+..|++++++ .|....++.++|.++...++.+++ ...+.+|+........
T Consensus 539 ~lg~~~~~~g~~~~A~~~~~~al~l---------~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~ 604 (681)
T 2pzi_A 539 GLARARSAEGDRVGAVRTLDEVPPT---------SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPP 604 (681)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCTT---------STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHcCCHHHHHHHHHhhccc---------CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCC
Confidence 9999999999999999999999887 566788999999999888876666 6778888877776643
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.60 E-value=5.5e-15 Score=166.99 Aligned_cols=192 Identities=13% Similarity=-0.005 Sum_probs=163.5
Q ss_pred HHcCCHhHHHHHHHHhh--------chhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCh
Q 005139 276 CSLGQYNEAIPVLEQSI--------EIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDP 347 (712)
Q Consensus 276 ~~~g~~~~A~~~~~~al--------~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 347 (712)
...|++++|+..|++++ ... +++. .+++.+|.++...|++++|+..|++++++ +|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-----p~~~----~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p 464 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-----SESV----ELPLMEVRALLDLGDVAKATRKLDDLAER--------VG 464 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-----TTCS----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HC
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-----ccch----hHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------Cc
Confidence 77899999999999998 433 3333 35899999999999999999999999998 57
Q ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC
Q 005139 348 RVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ 427 (712)
Q Consensus 348 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 427 (712)
....+++.+|.++...|++++|+..|++++++.+... .++.++|.++...|++++ +.+|++++. .
T Consensus 465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~--------~~~~~lg~~~~~~g~~~~-~~~~~~al~------~ 529 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGEL--------APKLALAATAELAGNTDE-HKFYQTVWS------T 529 (681)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCS--------HHHHHHHHHHHHHTCCCT-TCHHHHHHH------H
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--------HHHHHHHHHHHHcCChHH-HHHHHHHHH------h
Confidence 7789999999999999999999999999999987653 378999999999999999 999999985 3
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHhc
Q 005139 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRES-KSYCENALRIYEK 506 (712)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~ 506 (712)
.|....+++++|.++..+|++++|+..|++++++ .|....++.++|.++...++.+++ ...+.+|++.+..
T Consensus 530 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~ 601 (681)
T 2pzi_A 530 NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPT--------SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEA 601 (681)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--------STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--------CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhh
Confidence 5666778999999999999999999999999998 899999999999999888876666 6778888887766
Q ss_pred C
Q 005139 507 P 507 (712)
Q Consensus 507 ~ 507 (712)
.
T Consensus 602 ~ 602 (681)
T 2pzi_A 602 L 602 (681)
T ss_dssp S
T ss_pred C
Confidence 4
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.59 E-value=2.4e-15 Score=134.93 Aligned_cols=147 Identities=12% Similarity=0.162 Sum_probs=124.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHH
Q 005139 479 RLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVA 558 (712)
Q Consensus 479 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 558 (712)
.||.++...|++++|+..+++++.. .|.....++.+|.+|...|++++|+.+|++++++.+.. .
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~---------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~-------~ 65 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPS---------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD-------P 65 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCS---------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------H
T ss_pred HhHHHHHHcChHHHHHHHHHHhccc---------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------H
Confidence 4788888999999999999998776 56677788999999999999999999999999987655 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHHhcCCC
Q 005139 559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVEL-FEEARSILEQECGPY 637 (712)
Q Consensus 559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~ 637 (712)
.++..+|.+|...|++++|+.+|++++++ .+....++..+|.+|...|++++|... +++|+++
T Consensus 66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l-------- 129 (150)
T 4ga2_A 66 KAHRFLGLLYELEENTDKAVECYRRSVEL--------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL-------- 129 (150)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--------
Confidence 78999999999999999999999999987 233457899999999999999887765 5999999
Q ss_pred ChhhHHHHHHHHHHHHHccc
Q 005139 638 HPDTLGVYSNLAGTYDAIGR 657 (712)
Q Consensus 638 ~p~~~~~~~~La~~~~~~g~ 657 (712)
+|+...++..++.++...|+
T Consensus 130 ~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 130 FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp STTCHHHHHHHHHHHHTCCC
T ss_pred CcCCHHHHHHHHHHHHHhCc
Confidence 89888999999999888774
No 101
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.59 E-value=7.4e-14 Score=149.13 Aligned_cols=152 Identities=8% Similarity=-0.076 Sum_probs=144.0
Q ss_pred HHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhH
Q 005139 270 VIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRV 349 (712)
Q Consensus 270 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 349 (712)
..+..+..+|+|++|+.++++++++....+|++|+. .+.++.+||.+|..+|+|++|+.++++++++.+..+|.++|.+
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~-~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLY-VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 345567789999999999999999999999999997 5778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139 350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTM 422 (712)
Q Consensus 350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 422 (712)
+..+.+||.+|..+|++++|+.+|++|+++.....+++++..+.++..++.++..++.+++|...|.++.+.+
T Consensus 393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987554
No 102
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.58 E-value=9.3e-14 Score=125.76 Aligned_cols=158 Identities=18% Similarity=0.201 Sum_probs=129.1
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005139 427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (712)
Q Consensus 427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (712)
+....+.++..+|.++...|++++|+.++++++.+..... +....+.++..+|.++...|++++|+.++++++.+...
T Consensus 4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4456677888889999999999999999999988877653 24555678888999999999999999999999988776
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005139 507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586 (712)
Q Consensus 507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 586 (712)
. .+.+....++..+|.++...|++++|+.++++++.+.... +.......++..+|.++...|++++|+.++++++.
T Consensus 82 ~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 82 L---KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp T---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred h---CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc-cchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3 3345567788899999999999999999999999888776 44556677888899999999999999999999988
Q ss_pred HHHH
Q 005139 587 KLRA 590 (712)
Q Consensus 587 ~~~~ 590 (712)
+.+.
T Consensus 158 ~~~~ 161 (164)
T 3ro3_A 158 ISRE 161 (164)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 7654
No 103
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.58 E-value=5.9e-14 Score=149.91 Aligned_cols=157 Identities=13% Similarity=0.082 Sum_probs=144.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccc
Q 005139 224 LLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEH 303 (712)
Q Consensus 224 l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 303 (712)
++..+..+..+|+ |++|+.++++++++.++.. +..+|..+.++.+||.+|..+|+|++|+.++++++++....+|++|
T Consensus 312 ~le~a~~~~~qg~-~~eA~~l~~~aL~~~~~~l-g~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H 389 (490)
T 3n71_A 312 TLEKIDKARSEGL-YHEVVKLCRECLEKQEPVF-ADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN 389 (490)
T ss_dssp HHHHHHHHHTTTC-HHHHHHHHHHHHHHHTTTB-CTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3445556778887 9999999999999998876 7888999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Q 005139 304 ALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN 383 (712)
Q Consensus 304 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 383 (712)
|. .+..+++||.+|..+|++++|+.+|++|+++....+|+++|.+..+...++.++..++.+.+|...|.++.+...+.
T Consensus 390 p~-~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~ 468 (490)
T 3n71_A 390 AQ-LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNN 468 (490)
T ss_dssp HH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 98 46789999999999999999999999999999999999999999999999999999999999999999998766433
No 104
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.57 E-value=2.3e-13 Score=131.28 Aligned_cols=181 Identities=12% Similarity=0.034 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC
Q 005139 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP 512 (712)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 512 (712)
..++.+|..++..|++++|+..|++++.. .++.+....+++.+|.+|...|++++|+..|+++++....
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~------ 73 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT------ 73 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC------
Confidence 45677777888888888888888887776 1223344567778888888888888888888888877433
Q ss_pred ChhHHHHHHHHHHHHHH------------------cccHHHHHHHHHHHHHHHHhCCCCCC----------cHHHHHHHH
Q 005139 513 PEEIASGLTDVSSIYES------------------MNELEQAIKLLQKALKIYNDAPGQQS----------TVAGIEAQM 564 (712)
Q Consensus 513 ~~~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~----------~~~~~~~~l 564 (712)
.+....+++.+|.++.. .|++++|+..|++++...|+...... ........+
T Consensus 74 ~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~ 153 (225)
T 2yhc_A 74 HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSV 153 (225)
T ss_dssp CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445567777777765 68999999999999987765421110 011122578
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139 565 GVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (712)
Q Consensus 565 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 629 (712)
|.+|...|++++|+..|+++++.. +..+....++..+|.+|..+|++++|+..++.+...
T Consensus 154 a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 154 AEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 999999999999999999999863 223455689999999999999999999999987664
No 105
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.57 E-value=3.7e-11 Score=133.29 Aligned_cols=434 Identities=8% Similarity=-0.047 Sum_probs=280.2
Q ss_pred cccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCC---HhHHH
Q 005139 209 DVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQ---YNEAI 285 (712)
Q Consensus 209 ~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~---~~~A~ 285 (712)
.+......+|.....+..++......+. +..+...|++++..+ |.....+...+..-...++ ++.+.
T Consensus 54 ~lE~~l~~np~d~~~W~~yi~~~~~~~~-~~~aR~vyEraL~~f---------P~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 54 KLNDMIEEQPTDIFLYVKLLKHHVSLKQ-WKQVYETFDKLHDRF---------PLMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred HHHHHHHHCcCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 4555567789999999999999888886 999999999999987 3335556666777778888 99999
Q ss_pred HHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCH----HHHH----HHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 005139 286 PVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQL----ENSL----MCYTTGLEVQKQVLGETDPRVGETCRYLA 357 (712)
Q Consensus 286 ~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~----~~A~----~~~~~al~~~~~~~~~~~~~~~~~~~~la 357 (712)
.+|++++... +..+. +.+|..........++. +++. ..|++|+.. .|.-++....+|....
T Consensus 124 ~lfeRal~~~-----~~~~s--v~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~----vG~~d~~s~~iW~~Yi 192 (679)
T 4e6h_A 124 PVLARCLSKE-----LGNND--LSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDK----CAIFEPKSIQFWNEYL 192 (679)
T ss_dssp HHHHHHTCSS-----SCCCC--HHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHH----TTTTCSSCHHHHHHHH
T ss_pred HHHHHHHHhc-----CCCCC--HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH----hCcccccchHHHHHHH
Confidence 9999999875 11122 22355554444444443 3444 555555544 3431222233443333
Q ss_pred HHHH---------HhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----------HHHHcCCHHHHHHHHHHH
Q 005139 358 EAHV---------QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGL----------ICETKGDHEAALEHLVLA 418 (712)
Q Consensus 358 ~~~~---------~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~----------~~~~~g~~~~A~~~~~~a 418 (712)
.... ..++++.+..+|++++.+ |.. ........|...-. +-....+|+.|...+.+.
T Consensus 193 ~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i-P~~---~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~ 268 (679)
T 4e6h_A 193 HFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ-PMD---CLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDW 268 (679)
T ss_dssp HHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS-CCS---SHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccCcHHHHhHHHHHHHHHHHHHhC-ccH---HHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHH
Confidence 3222 344577888888888752 110 00111111111110 111122344455444432
Q ss_pred HHHHHhCCC--------------------ChhHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHHhcCCC
Q 005139 419 SMTMIANDQ--------------------DAEVASVDCSIGDTYLSLSR---------YDEAGFAYQKALTAFKTNKGEN 469 (712)
Q Consensus 419 l~~~~~~~~--------------------~~~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~~~~~~~~ 469 (712)
......... .......|... +-+...+ .......|++++..
T Consensus 269 ~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~y--i~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-------- 338 (679)
T 4e6h_A 269 LNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEW--IRWESDNKLELSDDLHKARMTYVYMQAAQH-------- 338 (679)
T ss_dssp HHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHH--HHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHH--HHHHHhCCccccchhhHHHHHHHHHHHHHH--------
Confidence 221111110 01222333333 3333322 23456789999988
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Q 005139 470 HPAVASVFVRLADMYNRTGKLRESK-SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN 548 (712)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 548 (712)
.|....+|...+..+...|+.++|. ..|++|+..+ |.....+..++.+....|++++|..+|++++....
T Consensus 339 ~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~---------P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~ 409 (679)
T 4e6h_A 339 VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI---------PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIH 409 (679)
T ss_dssp TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 7778899999999999999999997 9999999873 23356788899999999999999999999998643
Q ss_pred h--------CCCC-------CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHh
Q 005139 549 D--------APGQ-------QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR 613 (712)
Q Consensus 549 ~--------~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 613 (712)
. .+.. ......+|...+.+..+.|+.+.|..+|.+|+... ... . ..++...|.+....
T Consensus 410 ~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~---~~~-~---~~lyi~~A~lE~~~ 482 (679)
T 4e6h_A 410 LDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK---KLV-T---PDIYLENAYIEYHI 482 (679)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG---GGS-C---THHHHHHHHHHHTT
T ss_pred HHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CCC-C---hHHHHHHHHHHHHh
Confidence 1 1100 00234577888888888999999999999998741 111 1 24555666666665
Q ss_pred C-CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCCCCh---hHHHHHHHHHHHHHHh
Q 005139 614 Y-SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGTANP---DVDDEKRRLAELLKEA 682 (712)
Q Consensus 614 g-~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~~~p---~~~~~~~~la~~~~~~ 682 (712)
+ +++.|..+|+.+++. .|+....+...+......|+ ++......| .....+......-...
T Consensus 483 ~~d~e~Ar~ife~~Lk~--------~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~ 554 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKY--------FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKV 554 (679)
T ss_dssp TSCCHHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHH--------CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Confidence 5 599999999999998 55555666677777777776 343334444 5667888888888999
Q ss_pred ccHHHHHHHHHHHHHHhccc
Q 005139 683 GRVRSRKAQSLETLLDANSR 702 (712)
Q Consensus 683 g~~~~A~~~~l~~~l~~~p~ 702 (712)
|+.+.+. +.++++++..|+
T Consensus 555 G~~~~~~-~v~~R~~~~~P~ 573 (679)
T 4e6h_A 555 GSLNSVR-TLEKRFFEKFPE 573 (679)
T ss_dssp CCSHHHH-HHHHHHHHHSTT
T ss_pred CCHHHHH-HHHHHHHHhCCC
Confidence 9999999 999999999986
No 106
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.57 E-value=3.2e-13 Score=122.21 Aligned_cols=157 Identities=21% Similarity=0.176 Sum_probs=141.7
Q ss_pred ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 005139 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN 425 (712)
Q Consensus 346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 425 (712)
.+..+.++..+|.++...|++++|+.++++++.+.+.... ....+.++..+|.++...|++++|+.++++++......
T Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD--KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 82 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 3466789999999999999999999999999999988653 35556789999999999999999999999999998888
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 005139 426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (712)
Q Consensus 426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (712)
++.+....++..+|.++...|++++|+.++++++.+..... +.+....++..+|.++...|++++|+.++++++++.+
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK--DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc--chHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999987764 3566788999999999999999999999999999976
Q ss_pred c
Q 005139 506 K 506 (712)
Q Consensus 506 ~ 506 (712)
+
T Consensus 161 ~ 161 (164)
T 3ro3_A 161 E 161 (164)
T ss_dssp T
T ss_pred H
Confidence 5
No 107
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.56 E-value=1.4e-13 Score=132.87 Aligned_cols=182 Identities=14% Similarity=0.036 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh
Q 005139 350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA 429 (712)
Q Consensus 350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 429 (712)
...++.+|..++..|++++|+..|++++...+... ....+++.+|.++...|++++|+..|++++.. .+..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~---~P~~~ 75 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGP-----YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL---NPTHP 75 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST-----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCC
Confidence 35788999999999999999999999998765432 22457899999999999999999999998854 34555
Q ss_pred hHHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHHHHHhcCCCCHHHH--------------HHH
Q 005139 430 EVASVDCSIGDTYLS------------------LSRYDEAGFAYQKALTAFKTNKGENHPAVA--------------SVF 477 (712)
Q Consensus 430 ~~~~~~~~la~~~~~------------------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--------------~~~ 477 (712)
....+++.+|.++.. .|++++|+..|+++++... +++... ...
T Consensus 76 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P-----~~~~a~~a~~~l~~~~~~~~~~~ 150 (225)
T 2yhc_A 76 NIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP-----NSQYTTDATKRLVFLKDRLAKYE 150 (225)
T ss_dssp THHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCT-----TCTTHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCc-----CChhHHHHHHHHHHHHHHHHHHH
Confidence 566788888988876 5789999999999988621 122211 222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139 478 VRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (712)
Q Consensus 478 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (712)
..+|.+|...|++++|+..|+++++.+.. .+....++..+|.+|..+|++++|+..++++....+..
T Consensus 151 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 151 YSVAEYYTERGAWVAVVNRVEGMLRDYPD------TQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTT------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHCcC------CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 67899999999999999999999999544 45567899999999999999999999999887655443
No 108
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.52 E-value=2.1e-12 Score=129.00 Aligned_cols=217 Identities=10% Similarity=0.056 Sum_probs=186.8
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHH
Q 005139 444 SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG--KLRESKSYCENALRIYEKPVPGVPPEEIASGLT 521 (712)
Q Consensus 444 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 521 (712)
.....++|+..+.++|.+ +|....+|+..+.++...| ++++++.+++.++.+ +|....+|+
T Consensus 45 ~~e~s~~aL~~t~~~L~~--------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~---------nPk~y~aW~ 107 (306)
T 3dra_A 45 AEEYSERALHITELGINE--------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD---------NEKNYQIWN 107 (306)
T ss_dssp TTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH---------CTTCCHHHH
T ss_pred cCCCCHHHHHHHHHHHHH--------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH---------CcccHHHHH
Confidence 334447999999999999 9999999999999999999 999999999999998 444567888
Q ss_pred HHHHHH----HHc---ccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHHhC
Q 005139 522 DVSSIY----ESM---NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYS--DSYDSFKNAISKLRAIG 592 (712)
Q Consensus 522 ~la~~~----~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~~~ 592 (712)
..+.++ ... +++++++.++.+++...++. ..++...+.++...|.++ ++++++.++++.
T Consensus 108 ~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkn-------y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~----- 175 (306)
T 3dra_A 108 YRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKN-------HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT----- 175 (306)
T ss_dssp HHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-----
Confidence 888888 666 78999999999999987766 468999999999999998 999999999985
Q ss_pred CCCChHHHHHHHHHHHHHHHhCC------HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc--------h
Q 005139 593 ERKSAFFGVALNQMGLACVQRYS------INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR--------E 658 (712)
Q Consensus 593 ~~~~~~~~~~~~~lg~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~--------~ 658 (712)
.+....+|...+.++...+. ++++++++.+++.+ +|....+++.++.++...|+ .
T Consensus 176 ---d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--------~p~n~SaW~y~~~ll~~~~~~~~~~~~~~ 244 (306)
T 3dra_A 176 ---DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVK--------CPQNPSTWNYLLGIHERFDRSITQLEEFS 244 (306)
T ss_dssp ---CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCCGGGGHHHH
T ss_pred ---CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHh--------CCCCccHHHHHHHHHHhcCCChHHHHHHH
Confidence 12234788999999988887 99999999999999 99999999999999999988 1
Q ss_pred hhhC---CCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-hcc
Q 005139 659 EKLG---TANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD-ANS 701 (712)
Q Consensus 659 ~~l~---~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~-~~p 701 (712)
..+. ...|....++..|+.+|.+.|+.++|+ +.|+.+.+ .+|
T Consensus 245 ~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~-~~~~~l~~~~Dp 290 (306)
T 3dra_A 245 LQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR-TVYDLLKSKYNP 290 (306)
T ss_dssp HTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHTTCG
T ss_pred HHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH-HHHHHHHhccCh
Confidence 1111 124777889999999999999999999 99999997 577
No 109
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.50 E-value=4e-13 Score=116.24 Aligned_cols=117 Identities=14% Similarity=0.131 Sum_probs=106.5
Q ss_pred ChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 005139 513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG 592 (712)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 592 (712)
.|..+..+.++|..|+..|+|++|+.+|++++++.+.. ..++..+|.+|..+|++++|+..|++++++
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----- 76 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN-------AILYSNRAACLTKLMEFQRALDDCDTCIRL----- 76 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHhhHHHhhccHHHHHHHHHHHHHh-----
Confidence 68889999999999999999999999999999986654 468999999999999999999999999986
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 005139 593 ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTY 652 (712)
Q Consensus 593 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~ 652 (712)
.+....++..+|.++..+|++++|+..|++++++ +|+...++..|+.++
T Consensus 77 ---~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l--------~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 77 ---DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV--------DPSNEEAREGVRNCL 125 (126)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHC
T ss_pred ---hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CcCCHHHHHHHHHhc
Confidence 2234579999999999999999999999999999 999999999998774
No 110
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.49 E-value=5.1e-13 Score=115.57 Aligned_cols=117 Identities=16% Similarity=0.275 Sum_probs=99.2
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005139 427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (712)
Q Consensus 427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (712)
.+|..+..+.++|..|+..|+|++|+.+|++++++ .|....++.++|.+|..+|++++|+..|++++++
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--- 76 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL--- 76 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh---
Confidence 56888888999999999999999999999999988 7888889999999999999999999999999988
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Q 005139 507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM 567 (712)
Q Consensus 507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~ 567 (712)
.|....++..+|.++..+|++++|+..|++++++.|.. ..++..++.+
T Consensus 77 ------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~-------~~a~~~l~~~ 124 (126)
T 4gco_A 77 ------DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN-------EEAREGVRNC 124 (126)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHH
T ss_pred ------hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCC-------HHHHHHHHHh
Confidence 44457789999999999999999999999999886654 2455556554
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.48 E-value=2.7e-13 Score=125.29 Aligned_cols=170 Identities=16% Similarity=0.030 Sum_probs=136.1
Q ss_pred CCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhh
Q 005139 217 KPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPV 296 (712)
Q Consensus 217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~ 296 (712)
+|.....++.+|..++..|+ +++|+..|++++... |....++..+|.++...|++++|+..|++++...
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~---------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~- 70 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGE-HAQALNVIQTLSDEL---------QSRGDVKLAKADCLLETKQFELAQELLATIPLEY- 70 (176)
T ss_dssp ----CTTHHHHHHHHHHTTC-HHHHHHHHHTSCHHH---------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-
T ss_pred CCCHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHC---------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-
Confidence 34445568899999999997 999999999999876 5668889999999999999999999999998875
Q ss_pred hhhcccchHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 005139 297 IEEGQEHALAKFAGHMQLGDTY-AMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQM 375 (712)
Q Consensus 297 ~~~~~~~~~~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 375 (712)
+ ++.. +..++.+. ...+...+|+..|++++++ +|....+++.+|.++...|++++|+..|++
T Consensus 71 ----p-~~~~----~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 133 (176)
T 2r5s_A 71 ----Q-DNSY----KSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWN 133 (176)
T ss_dssp ----C-CHHH----HHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----C-ChHH----HHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 3 3321 22333332 2333444689999999988 688889999999999999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005139 376 ALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASM 420 (712)
Q Consensus 376 al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~ 420 (712)
++...+.... ..++..+|.++...|++++|+..|++++.
T Consensus 134 ~l~~~p~~~~------~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 134 ILKVNLGAQD------GEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHTTCTTTTT------THHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHhCcccCh------HHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 9987654322 23688999999999999999999998874
No 112
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.47 E-value=5.9e-12 Score=125.71 Aligned_cols=238 Identities=7% Similarity=-0.052 Sum_probs=195.8
Q ss_pred HhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 005139 362 QALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG--DHEAALEHLVLASMTMIANDQDAEVASVDCSIG 439 (712)
Q Consensus 362 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 439 (712)
.....++|+.++.+++.+.+.. ..+++..+.++...| ++++++.++..++. ..|....+++..+
T Consensus 45 ~~e~s~~aL~~t~~~L~~nP~~--------~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~------~nPk~y~aW~~R~ 110 (306)
T 3dra_A 45 AEEYSERALHITELGINELASH--------YTIWIYRFNILKNLPNRNLYDELDWCEEIAL------DNEKNYQIWNYRQ 110 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH------HCTTCCHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHCcHH--------HHHHHHHHHHHHHcccccHHHHHHHHHHHHH------HCcccHHHHHHHH
Confidence 3344579999999999998765 348999999999999 99999999999984 3555667888888
Q ss_pred HHH----HHc---CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHhcCCCC
Q 005139 440 DTY----LSL---SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLR--ESKSYCENALRIYEKPVPG 510 (712)
Q Consensus 440 ~~~----~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~~~~~~~ 510 (712)
.++ ... +++++++.++.++++. +|....+|...+.++...|.++ +++++++++++.
T Consensus 111 ~iL~~~~~~l~~~~~~~~EL~~~~~~l~~--------~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~------- 175 (306)
T 3dra_A 111 LIIGQIMELNNNDFDPYREFDILEAMLSS--------DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT------- 175 (306)
T ss_dssp HHHHHHHHHTTTCCCTHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-------
Confidence 888 666 8999999999999998 8999999999999999999998 999999999998
Q ss_pred CCChhHHHHHHHHHHHHHHccc------HHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHH-HHHHHHH
Q 005139 511 VPPEEIASGLTDVSSIYESMNE------LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSD-SYDSFKN 583 (712)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~ 583 (712)
++....+|...+.++...+. ++++++++.+++...+.. ..+++.++.++...|+..+ ...++.+
T Consensus 176 --d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n-------~SaW~y~~~ll~~~~~~~~~~~~~~~~ 246 (306)
T 3dra_A 176 --DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQN-------PSTWNYLLGIHERFDRSITQLEEFSLQ 246 (306)
T ss_dssp --CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSC-------HHHHHHHHHHHHHTTCCGGGGHHHHHT
T ss_pred --CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCC-------ccHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 45567889999999999987 999999999999986655 3688899999999998555 4445565
Q ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHHHhcCCCChhhHHHHHHHHH
Q 005139 584 AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS-ILEQECGPYHPDTLGVYSNLAG 650 (712)
Q Consensus 584 al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~p~~~~~~~~La~ 650 (712)
++.+- .. .+....++..++.+|.+.|+.++|+++|+.+.+ + +|.....+...+.
T Consensus 247 ~~~~~----~~-~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~--------Dpir~~yW~~~~~ 301 (306)
T 3dra_A 247 FVDLE----KD-QVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKY--------NPIRSNFWDYQIS 301 (306)
T ss_dssp TEEGG----GT-EESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--------CGGGHHHHHHHHH
T ss_pred HHhcc----CC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcc--------ChHHHHHHHHHHh
Confidence 55421 00 122346899999999999999999999999886 5 8887777766654
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.45 E-value=2.5e-12 Score=122.68 Aligned_cols=175 Identities=12% Similarity=0.112 Sum_probs=145.1
Q ss_pred hHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 005139 282 NEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV 361 (712)
Q Consensus 282 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 361 (712)
.+|+.+|+++.+.. ...+++.||.+|...+++++|+.+|+++++. ....+++.||.+|.
T Consensus 3 ~eA~~~~~~aa~~g-----------~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------g~~~a~~~lg~~y~ 61 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG-----------DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----------GDGDALALLAQLKI 61 (212)
T ss_dssp -CTTHHHHHHHHTT-----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHCC-----------CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHH
Confidence 45778888887642 2335899999999999999999999999765 34578999999999
Q ss_pred HhC----CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHhCCCCh--hH
Q 005139 362 QAL----QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET----KGDHEAALEHLVLASMTMIANDQDA--EV 431 (712)
Q Consensus 362 ~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~--~~ 431 (712)
. + ++++|+.+|+++.+.. ...+++.||.+|.. .+++++|+.+|+++.. ..+ ..
T Consensus 62 ~-~g~~~~~~~A~~~~~~A~~~g----------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~------~~~~~~~ 124 (212)
T 3rjv_A 62 R-NPQQADYPQARQLAEKAVEAG----------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR------DSESDAA 124 (212)
T ss_dssp S-STTSCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS------STTSHHH
T ss_pred c-CCCCCCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH------cCCCcch
Confidence 8 7 9999999999996531 14478999999988 8999999999999972 333 45
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHH
Q 005139 432 ASVDCSIGDTYLS----LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT-G-----KLRESKSYCENAL 501 (712)
Q Consensus 432 ~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al 501 (712)
+.++++||.+|.. .+++++|+.+|+++++. +....++++||.+|... | ++++|+.+|+++.
T Consensus 125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---------~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~ 195 (212)
T 3rjv_A 125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL---------SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSC 195 (212)
T ss_dssp HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT---------SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence 8899999999999 89999999999999875 12234789999999864 3 8999999999999
Q ss_pred HH
Q 005139 502 RI 503 (712)
Q Consensus 502 ~~ 503 (712)
+.
T Consensus 196 ~~ 197 (212)
T 3rjv_A 196 LE 197 (212)
T ss_dssp HH
T ss_pred Hc
Confidence 87
No 114
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.45 E-value=1.5e-12 Score=130.57 Aligned_cols=170 Identities=15% Similarity=0.014 Sum_probs=148.8
Q ss_pred CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhh
Q 005139 218 PGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVI 297 (712)
Q Consensus 218 p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~ 297 (712)
|.....++.+|..+...|+ +++|+..|++++... |....+++.+|.++...|++++|+..|++++...
T Consensus 114 p~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~---------P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~-- 181 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESN-YTDALPLLXDAWQLS---------NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD-- 181 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHT---------TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--
T ss_pred CCchhhHHHHHHHHHhCCC-HHHHHHHHHHHHHhC---------CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--
Confidence 7888999999999999997 999999999999875 4457789999999999999999999999998875
Q ss_pred hhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 005139 298 EEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMAL 377 (712)
Q Consensus 298 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 377 (712)
++.. ..+...+..+...++.++|+..|++++.. +|....+++.+|.++...|++++|+..|++++
T Consensus 182 ---p~~~----~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l 246 (287)
T 3qou_A 182 ---QDTR----YQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHL 246 (287)
T ss_dssp ---CSHH----HHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---cchH----HHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3222 23667777788889999999999999998 78889999999999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005139 378 DIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASM 420 (712)
Q Consensus 378 ~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~ 420 (712)
...+.... ..++..++.++...|+.++|...|++++.
T Consensus 247 ~~~p~~~~------~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 247 RXDLTAAD------GQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHCTTGGG------GHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hccccccc------chHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 98765421 34788999999999999999999998874
No 115
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.44 E-value=1.5e-12 Score=130.57 Aligned_cols=169 Identities=15% Similarity=0.094 Sum_probs=148.8
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 005139 347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND 426 (712)
Q Consensus 347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 426 (712)
|.....+..+|..+...|++++|+..|++++...+.. ..++..+|.++...|++++|+..+++++.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~--------~~a~~~la~~~~~~g~~~~A~~~l~~~~~------ 179 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQN--------GEIGLLLAETLIALNRSEDAEAVLXTIPL------ 179 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSC--------HHHHHHHHHHHHHTTCHHHHHHHHTTSCG------
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcc--------hhHHHHHHHHHHHCCCHHHHHHHHHhCch------
Confidence 5566788999999999999999999999999987654 34799999999999999999999998863
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005139 427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (712)
Q Consensus 427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (712)
..|.........+..+...++.++|+..|++++.. .|....+++.+|.++...|++++|+..|.++++.
T Consensus 180 ~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--- 248 (287)
T 3qou_A 180 QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE--------NPEDAALATQLALQLHQVGRNEEALELLFGHLRX--- 248 (287)
T ss_dssp GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc---
Confidence 23445566667777788899999999999999998 8888999999999999999999999999999998
Q ss_pred CCCCCCChhH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 005139 507 PVPGVPPEEI--ASGLTDVSSIYESMNELEQAIKLLQKALKI 546 (712)
Q Consensus 507 ~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 546 (712)
.|.. ..++..++.++...|+.++|...|++++..
T Consensus 249 ------~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 249 ------DLTAADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp ------CTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ------ccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 3333 678999999999999999999999999875
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.43 E-value=6.8e-13 Score=147.25 Aligned_cols=153 Identities=13% Similarity=0.052 Sum_probs=120.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHH
Q 005139 445 LSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVS 524 (712)
Q Consensus 445 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la 524 (712)
.|++++|+.+|+++++. .|....++..+|.++...|++++|+.+|++++++ .|....++..+|
T Consensus 2 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~lg 64 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL---------HPGHPEAVARLG 64 (568)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---------STTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHH
Confidence 47899999999999988 7777889999999999999999999999999987 344578899999
Q ss_pred HHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHH
Q 005139 525 SIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALN 604 (712)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 604 (712)
.+|..+|++++|+.+|++++++.+.. ..++..+|.+|...|++++|+.+|++++++. +....++.
T Consensus 65 ~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~ 129 (568)
T 2vsy_A 65 RVRWTQQRHAEAAVLLQQASDAAPEH-------PGIALWLGHALEDAGQAEAAAAAYTRAHQLL--------PEEPYITA 129 (568)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHH
Confidence 99999999999999999999986543 4688999999999999999999999999862 22347899
Q ss_pred HHHHHHHHh---CCHHHHHHHHHHHHHH
Q 005139 605 QMGLACVQR---YSINEAVELFEEARSI 629 (712)
Q Consensus 605 ~lg~~~~~~---g~~~~A~~~~~~al~~ 629 (712)
.+|.++..+ |++++|...|+++++.
T Consensus 130 ~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 130 QLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999999999 9999999999999987
No 117
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.43 E-value=1.5e-12 Score=124.26 Aligned_cols=174 Identities=14% Similarity=0.078 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHc
Q 005139 326 NSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETK 405 (712)
Q Consensus 326 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~ 405 (712)
+|+.+|+++.+. ..+.+++.||.+|...+++++|+.+|+++++.. . ..+++.||.+|..
T Consensus 4 eA~~~~~~aa~~----------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~------~~a~~~lg~~y~~- 62 (212)
T 3rjv_A 4 EPGSQYQQQAEA----------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----D------GDALALLAQLKIR- 62 (212)
T ss_dssp CTTHHHHHHHHT----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----C------HHHHHHHHHHTTS-
T ss_pred hHHHHHHHHHHC----------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----C------HHHHHHHHHHHHc-
Confidence 577788887764 345789999999999999999999999998641 1 3578999999998
Q ss_pred C----CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCCH--HHHH
Q 005139 406 G----DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS----LSRYDEAGFAYQKALTAFKTNKGENHP--AVAS 475 (712)
Q Consensus 406 g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~--~~~~ 475 (712)
+ ++++|+.+|+++.. +..+.+++++|.+|.. .+++++|+.+|+++++. .+ ..+.
T Consensus 63 ~g~~~~~~~A~~~~~~A~~--------~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--------~~~~~~~~ 126 (212)
T 3rjv_A 63 NPQQADYPQARQLAEKAVE--------AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD--------SESDAAVD 126 (212)
T ss_dssp STTSCCHHHHHHHHHHHHH--------TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS--------TTSHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc--------CCCcchHH
Confidence 7 99999999999963 2346788999999998 89999999999999876 44 5688
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHc-c-----cHHHHHHHHHHHHH
Q 005139 476 VFVRLADMYNR----TGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESM-N-----ELEQAIKLLQKALK 545 (712)
Q Consensus 476 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~ 545 (712)
+++.||.+|.. .+++++|+.+|+++++.. . ...++++||.+|... | ++++|+.+|+++.+
T Consensus 127 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~-~---------~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 127 AQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS-R---------TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS-C---------TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC-C---------CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999 899999999999998861 1 134689999999865 3 89999999999988
Q ss_pred H
Q 005139 546 I 546 (712)
Q Consensus 546 ~ 546 (712)
.
T Consensus 197 ~ 197 (212)
T 3rjv_A 197 E 197 (212)
T ss_dssp H
T ss_pred c
Confidence 6
No 118
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.43 E-value=5.8e-13 Score=122.99 Aligned_cols=167 Identities=14% Similarity=0.036 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCh
Q 005139 350 GETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDA 429 (712)
Q Consensus 350 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 429 (712)
...+..+|..+...|++++|+..|++++...+.. ..++..+|.++...|++++|+..|++++.. .|
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~--------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~------~p 71 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSR--------GDVKLAKADCLLETKQFELAQELLATIPLE------YQ 71 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS--------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGG------GC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc--------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhc------cC
Confidence 3457788999999999999999999999988765 347999999999999999999999987632 22
Q ss_pred hHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 005139 430 EVASVDCSIGDTY-LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508 (712)
Q Consensus 430 ~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 508 (712)
....+..++.+. ...++..+|+..+++++++ .|....++..+|.++...|++++|+.+|++++++...
T Consensus 72 -~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-- 140 (176)
T 2r5s_A 72 -DNSYKSLIAKLELHQQAAESPELKRLEQELAA--------NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLG-- 140 (176)
T ss_dssp -CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT--
T ss_pred -ChHHHHHHHHHHHHhhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc--
Confidence 122333334332 2333445689999999998 8888899999999999999999999999999887321
Q ss_pred CCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 005139 509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI 546 (712)
Q Consensus 509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 546 (712)
+....++..+|.++...|++++|+..|++++..
T Consensus 141 -----~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 141 -----AQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp -----TTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred -----cChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 112457899999999999999999999998864
No 119
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.42 E-value=3.1e-13 Score=131.51 Aligned_cols=219 Identities=12% Similarity=0.007 Sum_probs=169.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 005139 395 RRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSI-------GDTYLSLSRYDEAGFAYQKALTAFKTNKG 467 (712)
Q Consensus 395 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~~~~~~ 467 (712)
++..|.-+ ..+++..|+..|.+++. ..|..+.+|..+ +.++...+++.+++..+++++.+......
T Consensus 10 ~~~~~~~~-~~~d~~~A~~~F~~a~~------~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~ 82 (282)
T 4f3v_A 10 LFESAVSM-LPMSEARSLDLFTEITN------YDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLN 82 (282)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGC
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHHH------hChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhh
Confidence 44455555 58999999999999984 578889999999 89999999999999999999886332221
Q ss_pred CCCH-------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHH
Q 005139 468 ENHP-------------AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELE 534 (712)
Q Consensus 468 ~~~~-------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 534 (712)
.... ....+...++.++...|+|++|.+.|..++.. .|... ..+.+|.++...++|+
T Consensus 83 a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---------~p~~~-~~~~~a~l~~~~~r~~ 152 (282)
T 4f3v_A 83 ARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---------GSEHL-VAWMKAVVYGAAERWT 152 (282)
T ss_dssp CEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---------TCHHH-HHHHHHHHHHHTTCHH
T ss_pred hhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------CCchH-HHHHHHHHHHHcCCHH
Confidence 1000 12456667899999999999999999877653 34445 8899999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhC
Q 005139 535 QAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRY 614 (712)
Q Consensus 535 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g 614 (712)
+|+.+|+++... ..+.....+++.+|.++..+|++++|+.+|++++. +...+.....+++.+|.++..+|
T Consensus 153 dA~~~l~~a~~~-----~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~-----g~~~P~~~~da~~~~glaL~~lG 222 (282)
T 4f3v_A 153 DVIDQVKSAGKW-----PDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND-----SPAGEACARAIAWYLAMARRSQG 222 (282)
T ss_dssp HHHHHHTTGGGC-----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----STTTTTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcc-----CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-----CCCCccccHHHHHHHHHHHHHcC
Confidence 999999865432 11112245889999999999999999999999974 12113225678999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 005139 615 SINEAVELFEEARSILEQECGPYHPDTLGVYSNLA 649 (712)
Q Consensus 615 ~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La 649 (712)
+.++|...|++++.. +|+ ..+...|.
T Consensus 223 r~deA~~~l~~a~a~--------~P~-~~~~~aL~ 248 (282)
T 4f3v_A 223 NESAAVALLEWLQTT--------HPE-PKVAAALK 248 (282)
T ss_dssp CHHHHHHHHHHHHHH--------SCC-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhc--------CCc-HHHHHHHh
Confidence 999999999999998 887 66655554
No 120
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.41 E-value=1.2e-11 Score=120.43 Aligned_cols=220 Identities=12% Similarity=-0.001 Sum_probs=174.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-------HHHHHHcCCHhHHHHHHHHhhch
Q 005139 222 PLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVI-------AAIYCSLGQYNEAIPVLEQSIEI 294 (712)
Q Consensus 222 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~l-------a~~~~~~g~~~~A~~~~~~al~~ 294 (712)
..++..|.-+ ..++ +..|.+.|.+++.+. |..+.++..+ +.++...+++.+++..+.+++.+
T Consensus 8 ~~~~~~~~~~-~~~d-~~~A~~~F~~a~~~d---------P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l 76 (282)
T 4f3v_A 8 ASLFESAVSM-LPMS-EARSLDLFTEITNYD---------ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI 76 (282)
T ss_dssp HHHHHHHHHH-TTTC-HHHHHHHHHHHHHHC---------TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC
T ss_pred HHHHHHHhcc-cCCC-HHHHHHHHHHHHHhC---------hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456666665 5665 999999999999875 5668888888 89999999999999999999998
Q ss_pred hhhhhcccch-H-----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 005139 295 PVIEEGQEHA-L-----------AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ 362 (712)
Q Consensus 295 ~~~~~~~~~~-~-----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 362 (712)
.+........ . ..-.+...++.++...|+|++|...|..++.. .|... +.+.+|.+++.
T Consensus 77 ~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--------~p~~~-~~~~~a~l~~~ 147 (282)
T 4f3v_A 77 SMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--------GSEHL-VAWMKAVVYGA 147 (282)
T ss_dssp CGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--------TCHHH-HHHHHHHHHHH
T ss_pred ChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCchH-HHHHHHHHHHH
Confidence 7554433322 0 11345778899999999999999999987764 56666 89999999999
Q ss_pred hCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChh-HHHHHHHHHHH
Q 005139 363 ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE-VASVDCSIGDT 441 (712)
Q Consensus 363 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~la~~ 441 (712)
.++|++|+.+|+.+.... +......+++.+|.++..+|++++|+.+|++++. ....|. ...+.+.+|.+
T Consensus 148 ~~r~~dA~~~l~~a~~~~------d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~----g~~~P~~~~da~~~~gla 217 (282)
T 4f3v_A 148 AERWTDVIDQVKSAGKWP------DKFLAGAAGVAHGVAAANLALFTEAERRLTEAND----SPAGEACARAIAWYLAMA 217 (282)
T ss_dssp TTCHHHHHHHHTTGGGCS------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----STTTTTTHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhhccC------CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc----CCCCccccHHHHHHHHHH
Confidence 999999999998654321 1122245789999999999999999999999862 222144 77889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005139 442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRL 480 (712)
Q Consensus 442 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 480 (712)
+..+|+.++|...|++++.. +|. ..+...|
T Consensus 218 L~~lGr~deA~~~l~~a~a~--------~P~-~~~~~aL 247 (282)
T 4f3v_A 218 RRSQGNESAAVALLEWLQTT--------HPE-PKVAAAL 247 (282)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--------SCC-HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhc--------CCc-HHHHHHH
Confidence 99999999999999999998 666 5555444
No 121
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.41 E-value=5.9e-12 Score=132.21 Aligned_cols=121 Identities=8% Similarity=0.032 Sum_probs=114.5
Q ss_pred HcccHHHHHHHHHHHHHHHHhCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 005139 529 SMNELEQAIKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMG 607 (712)
Q Consensus 529 ~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg 607 (712)
..|+|++|+.++++++++....+|..+ .++.++.+||.+|..+|+|++|+.++++++++.+...+..++..+..+++||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 568999999999999999998888765 7889999999999999999999999999999999998888999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 005139 608 LACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA 649 (712)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La 649 (712)
.+|..+|++++|+.+|++|+++++..+|++||.+..+..+|.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 999999999999999999999999999999999999887775
No 122
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.40 E-value=4.9e-12 Score=133.24 Aligned_cols=131 Identities=12% Similarity=0.019 Sum_probs=122.0
Q ss_pred HHHHHcccHHHHHHHHHHHHHHHHhCCCCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHH
Q 005139 525 SIYESMNELEQAIKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVAL 603 (712)
Q Consensus 525 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 603 (712)
.-+..+|+|++|+..+++++++....++..+ .++.++.++|.+|..+|+|++|+.++++++.+.+...+..++..+..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3455789999999999999999888777765 788899999999999999999999999999999999888899999999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc
Q 005139 604 NQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI 655 (712)
Q Consensus 604 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~ 655 (712)
++||.+|..+|++++|+.+|++|+++++..+|++||.+..++.+|+.+...+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988754
No 123
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.40 E-value=5e-12 Score=109.51 Aligned_cols=108 Identities=10% Similarity=0.174 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139 471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (712)
Q Consensus 471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (712)
++.+.++.++|..++..|+|++|+.+|++++++ .|..+.++.++|.+|..+|++++|+..+++++++.+..
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~---------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~ 75 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL---------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET 75 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence 566788999999999999999999999999999 44567889999999999999999999999999999988
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139 551 PGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587 (712)
Q Consensus 551 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 587 (712)
.......+.++..+|.++..+|++++|+.+|++++..
T Consensus 76 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666677889999999999999999999999999875
No 124
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.40 E-value=6e-12 Score=108.98 Aligned_cols=109 Identities=18% Similarity=0.391 Sum_probs=98.3
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 005139 429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508 (712)
Q Consensus 429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 508 (712)
.+.+.++.++|..++..|+|++|+.+|++++++ .|..+.++.++|.+|..+|++++|+..|++++++....
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~- 75 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET- 75 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-
Confidence 355778899999999999999999999999999 88889999999999999999999999999999997664
Q ss_pred CCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 005139 509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547 (712)
Q Consensus 509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (712)
.......+.++..+|.++..+|++++|+.+|++++...
T Consensus 76 -~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 76 -RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp -TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred -chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 33445677899999999999999999999999999864
No 125
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.39 E-value=5.7e-13 Score=118.80 Aligned_cols=107 Identities=10% Similarity=0.075 Sum_probs=97.1
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 005139 426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (712)
Q Consensus 426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (712)
...|....+++.+|.+++..|++++|+.+|++++.+ .|....+|..+|.+|..+|++++|+.+|++++.+
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l-- 99 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-- 99 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--
Confidence 567888999999999999999999999999999999 8888999999999999999999999999999999
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005139 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (712)
Q Consensus 506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (712)
.|..+.+++++|.+|..+|++++|+..|++++.+.++
T Consensus 100 -------~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 100 -------GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp -------SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred -------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3445678999999999999999999999999998543
No 126
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.38 E-value=2.1e-12 Score=115.07 Aligned_cols=102 Identities=13% Similarity=0.107 Sum_probs=95.5
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005139 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (712)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (712)
.|....+++.+|.++...|++++|+.+|++++.+ .|....+|.++|.+|..+|++++|+..|++++.+.+.
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 8999999999999999999999999999999999 4556788999999999999999999999999999776
Q ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139 550 APGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587 (712)
Q Consensus 550 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 587 (712)
.+ .+++++|.+|..+|++++|+.+|++++.+
T Consensus 103 ~~-------~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 103 DY-------TPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp CC-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Cc-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 52 58999999999999999999999999997
No 127
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.38 E-value=5.2e-12 Score=140.15 Aligned_cols=157 Identities=12% Similarity=0.039 Sum_probs=124.5
Q ss_pred hCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 005139 363 ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTY 442 (712)
Q Consensus 363 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 442 (712)
.|++++|+.+|+++++..+.. ..++..+|.++...|++++|+.+|++++ ...+....++..+|.+|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~--------~~~~~~lg~~~~~~g~~~~A~~~~~~al------~~~p~~~~~~~~lg~~~ 67 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQD--------FVAWLMLADAELGMGDTTAGEMAVQRGL------ALHPGHPEAVARLGRVR 67 (568)
T ss_dssp -------------------CC--------HHHHHHHHHHHHHHTCHHHHHHHHHHHH------TTSTTCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHH------HhCCCCHHHHHHHHHHH
Confidence 478999999999999886543 3479999999999999999999999998 34566688999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHH
Q 005139 443 LSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTD 522 (712)
Q Consensus 443 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 522 (712)
..+|++++|+.+|++++++ .|....++..+|.+|...|++++|+.+|++++++ .+....++..
T Consensus 68 ~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~ 130 (568)
T 2vsy_A 68 WTQQRHAEAAVLLQQASDA--------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---------LPEEPYITAQ 130 (568)
T ss_dssp HHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHH
Confidence 9999999999999999998 7777899999999999999999999999999999 3345678999
Q ss_pred HHHHHHHc---ccHHHHHHHHHHHHHHHHhC
Q 005139 523 VSSIYESM---NELEQAIKLLQKALKIYNDA 550 (712)
Q Consensus 523 la~~~~~~---g~~~~A~~~~~~al~~~~~~ 550 (712)
+|.++... |++++|+..++++++..+..
T Consensus 131 l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 131 LLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 99999999 99999999999999986654
No 128
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.35 E-value=1.9e-11 Score=128.30 Aligned_cols=123 Identities=10% Similarity=-0.072 Sum_probs=115.7
Q ss_pred HHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 005139 276 CSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRY 355 (712)
Q Consensus 276 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 355 (712)
...|+|++|+.++++++++....++++|+. .+.++.+||.+|..+|+|++|+.++++++++.++.+|.++|.++..+++
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~-~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 387 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVY-MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK 387 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchH-HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 356899999999999999999999999997 5778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 005139 356 LAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMG 399 (712)
Q Consensus 356 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la 399 (712)
||.+|..+|++++|+.+|++|+++.....+++++....+..+|.
T Consensus 388 La~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 388 LGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 99999999999999999999999999999999998887766553
No 129
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.35 E-value=3e-12 Score=131.51 Aligned_cols=161 Identities=12% Similarity=0.072 Sum_probs=133.8
Q ss_pred hCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC---------ChhHHH
Q 005139 363 ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ---------DAEVAS 433 (712)
Q Consensus 363 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~ 433 (712)
++++++|+..+++++...+ ..+.++..+|.++...|++++|+.+|++++.+...... .+....
T Consensus 126 L~~~~~A~~~~~~a~~~~p--------~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~ 197 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKL--------EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLA 197 (336)
T ss_dssp EEEEECCCCGGGCCHHHHH--------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHH--------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHH
Confidence 4566777777777776553 33568999999999999999999999999976533211 123368
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCC
Q 005139 434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP 513 (712)
Q Consensus 434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 513 (712)
++.++|.+|..+|++++|+.+|++++.+ .|....+++.+|.+|..+|++++|+.+|++++++ .
T Consensus 198 ~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---------~ 260 (336)
T 1p5q_A 198 SHLNLAMCHLKLQAFSAAIESCNKALEL--------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL---------Y 260 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------C
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------C
Confidence 8999999999999999999999999999 7888899999999999999999999999999999 3
Q ss_pred hhHHHHHHHHHHHHHHcccHHHH-HHHHHHHHHHHH
Q 005139 514 EEIASGLTDVSSIYESMNELEQA-IKLLQKALKIYN 548 (712)
Q Consensus 514 ~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~ 548 (712)
|....++..++.++..+|++++| ...|.+++....
T Consensus 261 P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 296 (336)
T 1p5q_A 261 PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLA 296 (336)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44567899999999999999999 557777766543
No 130
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.34 E-value=3.8e-11 Score=126.45 Aligned_cols=132 Identities=14% Similarity=0.053 Sum_probs=123.7
Q ss_pred HHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHH
Q 005139 272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGE 351 (712)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 351 (712)
..-+..+|+|++|+.++++++++....++++|+. .+.++.+||.+|..+|+|++|+.++++++.+.+..+|.++|..+.
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~-~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIY-QLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchH-HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3446678999999999999999999999999987 577899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 005139 352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET 404 (712)
Q Consensus 352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~ 404 (712)
.+++||.+|..+|++++|+.++++|+++.....+++++....++.+|+.+...
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888877654
No 131
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.34 E-value=6e-12 Score=129.23 Aligned_cols=164 Identities=12% Similarity=0.075 Sum_probs=135.2
Q ss_pred ccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCC------CCHHHHHHHHHHH
Q 005139 199 KRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGK------PSLELVMCLHVIA 272 (712)
Q Consensus 199 ~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~------~~~~~~~~l~~la 272 (712)
.-+.+..|++.+......+|..+..+..+|..++..|+ +++|+.+|++|+.+........ ..+..+.++.++|
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~-~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 203 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGK-YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 203 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH
Confidence 34566677766666667788999999999999999997 9999999999999863210000 0123368899999
Q ss_pred HHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 005139 273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET 352 (712)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 352 (712)
.+|..+|++++|+.+|++++++. +.++ .+++.+|.+|..+|++++|+.+|++++++ +|....+
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~-----p~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~P~~~~a 266 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELD-----SNNE----KGLSRRGEAHLAVNDFELARADFQKVLQL--------YPNNKAA 266 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-----CCcH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CCCCHHH
Confidence 99999999999999999999986 4443 35999999999999999999999999999 6777889
Q ss_pred HHHHHHHHHHhCCHHHH-HHHHHHHHHHH
Q 005139 353 CRYLAEAHVQALQFSEA-QKFCQMALDIH 380 (712)
Q Consensus 353 ~~~la~~~~~~g~~~~A-~~~~~~al~~~ 380 (712)
+..++.++...|++++| ...|.+++...
T Consensus 267 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 267 KTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999 55777776554
No 132
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.34 E-value=4e-11 Score=104.24 Aligned_cols=131 Identities=27% Similarity=0.448 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCC
Q 005139 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVP 512 (712)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 512 (712)
.+++.+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.++++++...
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------- 65 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------- 65 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHc--------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--------
Confidence 45778899999999999999999999987 56667889999999999999999999999999883
Q ss_pred ChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139 513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587 (712)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 587 (712)
+....++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|..++++++..
T Consensus 66 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 66 -PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp -TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred -CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 2335678899999999999999999999999875432 357888999999999999999999999875
No 133
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.33 E-value=6.6e-11 Score=107.43 Aligned_cols=141 Identities=13% Similarity=0.113 Sum_probs=120.1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 005139 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509 (712)
Q Consensus 430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 509 (712)
..+..+..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.++++++.+.
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----- 77 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD----- 77 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----
Confidence 34677889999999999999999999999998 67778899999999999999999999999999983
Q ss_pred CCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR 589 (712)
Q Consensus 510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 589 (712)
+....++..+|.++...|++++|+.+|++++.+.+.. .....+..++..+...|++++|+.++.++..++.
T Consensus 78 ----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 148 (166)
T 1a17_A 78 ----KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD-----KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 148 (166)
T ss_dssp ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhc
Confidence 3346789999999999999999999999999885443 2223335566668889999999999999988876
Q ss_pred HhC
Q 005139 590 AIG 592 (712)
Q Consensus 590 ~~~ 592 (712)
...
T Consensus 149 ~~~ 151 (166)
T 1a17_A 149 SLD 151 (166)
T ss_dssp HCC
T ss_pred ccc
Confidence 644
No 134
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.33 E-value=2e-11 Score=106.21 Aligned_cols=132 Identities=27% Similarity=0.367 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 005139 394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAV 473 (712)
Q Consensus 394 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 473 (712)
+++.+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.++++++.. .|..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~ 68 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRS 68 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------CCCc
Confidence 5788999999999999999999998753 2334667889999999999999999999999987 5666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Q 005139 474 ASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYN 548 (712)
Q Consensus 474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 548 (712)
..++..+|.++...|++++|+.++++++... +....++..+|.++...|++++|+.++++++...+
T Consensus 69 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 69 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD---------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---------CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 7789999999999999999999999999883 22356788999999999999999999999987643
No 135
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.32 E-value=8e-12 Score=111.45 Aligned_cols=108 Identities=11% Similarity=0.029 Sum_probs=98.8
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 005139 426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (712)
Q Consensus 426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (712)
...|....+++.+|.++...|++++|+..|++++.+ .|....++..+|.++...|++++|+.+|++++.+
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-- 84 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM-- 84 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--
Confidence 567888899999999999999999999999999998 7888899999999999999999999999999999
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (712)
Q Consensus 506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (712)
.|....+++.+|.+|...|++++|+.+|++++.+.+..
T Consensus 85 -------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 85 -------DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp -------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred -------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 34446779999999999999999999999999998754
No 136
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.32 E-value=5e-11 Score=102.95 Aligned_cols=122 Identities=16% Similarity=0.143 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 005139 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509 (712)
Q Consensus 430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 509 (712)
..+..+..+|..++..|++++|+.+|++++.+ .|....++..+|.++...|++++|+..|++++.+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------ 67 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK------ 67 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------
Confidence 34677899999999999999999999999998 7888899999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Q 005139 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYY 569 (712)
Q Consensus 510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~ 569 (712)
.|....++..+|.++...|++++|+..|++++.+.+.. +..+....++..++.+..
T Consensus 68 ---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 68 ---DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEV-NNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-HTTTTHHHHHHHHHHHHH
T ss_pred ---CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCccc-CCchhHHHHHHHHHHHHH
Confidence 34457889999999999999999999999999998654 222333345555555543
No 137
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.31 E-value=1.8e-11 Score=116.56 Aligned_cols=141 Identities=18% Similarity=0.177 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Q 005139 392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP 471 (712)
Q Consensus 392 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 471 (712)
+..++.+|.++...|++++|+.+|++++ .. ...+++.+|.+|...|++++|+.+|++++.+ .|
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~------~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~~ 68 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ------DP---HSRICFNIGCMYTILKNMTEAEKAFTRSINR--------DK 68 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS------SC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc------CC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------Cc
Confidence 4467889999999999999999999884 11 3578999999999999999999999999998 77
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC-------CCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 005139 472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV-------PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL 544 (712)
Q Consensus 472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 544 (712)
....++..+|.+|...|++++|+.+|++++.+..... .....+....++..+|.++...|++++|+.+|++++
T Consensus 69 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 69 HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 7789999999999999999999999999999754310 000234567899999999999999999999999999
Q ss_pred HHHHh
Q 005139 545 KIYND 549 (712)
Q Consensus 545 ~~~~~ 549 (712)
.+.+.
T Consensus 149 ~~~p~ 153 (213)
T 1hh8_A 149 SMKSE 153 (213)
T ss_dssp TTCCS
T ss_pred HcCcc
Confidence 87543
No 138
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.31 E-value=6.9e-11 Score=107.32 Aligned_cols=140 Identities=15% Similarity=0.034 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 005139 390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN 469 (712)
Q Consensus 390 ~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 469 (712)
..+..+..+|.++...|++++|+.+|.+++.. .+....++..+|.++...|++++|+.++++++.+
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------- 76 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-------- 76 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 34567899999999999999999999999854 3444778999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005139 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (712)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (712)
.|....++..+|.++...|++++|+.+|++++.+... .+ ....+..++..+...|++++|+.++.++..+...
T Consensus 77 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~------~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 149 (166)
T 1a17_A 77 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH------DK-DAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS 149 (166)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC------CH-HHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence 6777889999999999999999999999999998432 22 1233355666688999999999999999888766
Q ss_pred C
Q 005139 550 A 550 (712)
Q Consensus 550 ~ 550 (712)
.
T Consensus 150 ~ 150 (166)
T 1a17_A 150 L 150 (166)
T ss_dssp C
T ss_pred c
Confidence 4
No 139
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.30 E-value=8e-11 Score=103.50 Aligned_cols=128 Identities=15% Similarity=0.154 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005139 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG----ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (712)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (712)
.+..+.++|..++..|+|++|+..|++++++...... ...|....+|.++|.++..+|+|++|+..|+++++++.+
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 4567789999999999999999999999999443100 001234569999999999999999999999999999554
Q ss_pred CCCCCCChhHHHHH----HHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHH
Q 005139 507 PVPGVPPEEIASGL----TDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGI 560 (712)
Q Consensus 507 ~~~~~~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 560 (712)
. +.-.|....+| +++|.++..+|++++|+..|++++++.+...+....+..+
T Consensus 90 ~--~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 90 R--GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp H--CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred c--ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 4 33355677888 9999999999999999999999999999886666555443
No 140
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.30 E-value=1.9e-10 Score=115.80 Aligned_cols=232 Identities=11% Similarity=0.034 Sum_probs=188.8
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhcC
Q 005139 429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG-KLRESKSYCENALRIYEKP 507 (712)
Q Consensus 429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~ 507 (712)
+....++..+..+....+..++|+.++.+++.+ +|....+|+..+.++...| .+++++.++++++..
T Consensus 51 ~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~--------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~---- 118 (349)
T 3q7a_A 51 EEYKDAMDYFRAIAAKEEKSERALELTEIIVRM--------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ---- 118 (349)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----
Confidence 344555666666666777778999999999999 8999999999999999999 599999999999987
Q ss_pred CCCCCChhHHHHHHHHHHHHHHc-c-cHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHH--------HH
Q 005139 508 VPGVPPEEIASGLTDVSSIYESM-N-ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYS--------DS 577 (712)
Q Consensus 508 ~~~~~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A 577 (712)
.|....+|...+.++... + ++++++.++.+++...++. ..++...+.++...|.++ ++
T Consensus 119 -----nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkN-------y~AW~~R~wvl~~l~~~~~~~~~~~~eE 186 (349)
T 3q7a_A 119 -----NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKN-------YHTWAYLHWLYSHFSTLGRISEAQWGSE 186 (349)
T ss_dssp -----TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTC-------HHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred -----CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhccccccchhhHHHH
Confidence 444578899999999988 7 8899999999988765544 468888888888888887 89
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCC-------HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 005139 578 YDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYS-------INEAVELFEEARSILEQECGPYHPDTLGVYSNLAG 650 (712)
Q Consensus 578 ~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~ 650 (712)
++++.++++. .+....+|...+.++...+. ++++++++.+++.+ +|....++..+..
T Consensus 187 Le~~~k~I~~--------dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--------~P~n~SaW~Ylr~ 250 (349)
T 3q7a_A 187 LDWCNEMLRV--------DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--------IPHNVSAWNYLRG 250 (349)
T ss_dssp HHHHHHHHHH--------CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHH
T ss_pred HHHHHHHHHh--------CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 9999999885 22234789999999998887 79999999999999 9999999999999
Q ss_pred HHHHccch---------------------------hhhCC------CChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 005139 651 TYDAIGRE---------------------------EKLGT------ANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLL 697 (712)
Q Consensus 651 ~~~~~g~~---------------------------~~l~~------~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l 697 (712)
++...|+. ..+.. ..+....++.-|+.+|...|+.++|. +.++.+.
T Consensus 251 Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~-~~~~~l~ 329 (349)
T 3q7a_A 251 FLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAA-KVFEKLS 329 (349)
T ss_dssp HHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHH-HHHHHHH
T ss_pred HHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHH-HHHHHHH
Confidence 99876641 00111 12456778999999999999999999 9999987
Q ss_pred H-hcc
Q 005139 698 D-ANS 701 (712)
Q Consensus 698 ~-~~p 701 (712)
+ .+|
T Consensus 330 ~~~dp 334 (349)
T 3q7a_A 330 SEYDQ 334 (349)
T ss_dssp HTTCG
T ss_pred hhhCh
Confidence 4 344
No 141
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.29 E-value=7.3e-12 Score=125.11 Aligned_cols=195 Identities=12% Similarity=0.036 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 005139 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344 (712)
Q Consensus 265 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 344 (712)
+..+..+|..++..|+|++|+.+|++++.+. +.++ .++..+|.+|...|++++|+..|++++++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~------- 67 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-----PLVA----VYYTNRALCYLKMQQPEQALADCRRALEL------- 67 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTTS-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CccH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 5678889999999999999999999999885 4443 35899999999999999999999999987
Q ss_pred CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 005139 345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA 424 (712)
Q Consensus 345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 424 (712)
+|....+++.+|.++...|++++|+.+|++++.+.+......... ++..+ . ..++..+..... ..
T Consensus 68 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~---~~~~~--~------~~~~~~~~~~~~---~~ 132 (281)
T 2c2l_A 68 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDD---IPSAL--R------IAKKKRWNSIEE---RR 132 (281)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSH---HHHHH--H------HHHHHHHHHHHH---TC
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHH---HHHHH--H------HHHHHHHHHHHH---HH
Confidence 678889999999999999999999999999999998764321110 11111 1 111111111111 11
Q ss_pred CCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Q 005139 425 NDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT-GKLRESKSYCENALRI 503 (712)
Q Consensus 425 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 503 (712)
....+.. ...++.++ .|++++|+..++++++. .|........++.++... +.+++|..+|.++.+.
T Consensus 133 ~~~~~~i---~~~l~~l~--~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 133 IHQESEL---HSYLTRLI--AAERERELEECQRNHEG--------HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp CCCCCHH---HHHHHHHH--HHHHHHHHTTTSGGGTT--------TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HhhhHHH---HHHHHHHH--HHHHHHHHHHHHhhhcc--------ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 2223333 33344443 69999999999999887 666667777777777766 7788899988887653
No 142
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.29 E-value=9.6e-10 Score=110.22 Aligned_cols=224 Identities=9% Similarity=-0.054 Sum_probs=180.4
Q ss_pred HHHcCCHH-HHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHHHHhcCCC
Q 005139 318 YAMLGQLE-NSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQ----------FSEAQKFCQMALDIHKDNGSP 386 (712)
Q Consensus 318 ~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~ 386 (712)
....|.+. +|+.++.+++.+ +|....+|+..+.++...+. +++++.++..++...++..
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~--------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny-- 108 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY-- 108 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH--
T ss_pred HHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCH--
Confidence 34567665 789999999988 78888999999998887776 6889999999988776653
Q ss_pred CCHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHH
Q 005139 387 ASLEEAADRRLMGLICETKG--DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR-YDEAGFAYQKALTAFK 463 (712)
Q Consensus 387 ~~~~~a~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~ 463 (712)
.+|...+.++...+ .+++++.++.+++. .++....++...+.+....|. +++++.++.++++.
T Consensus 109 ------~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~------~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~-- 174 (331)
T 3dss_A 109 ------GTWHHRCWLLSRLPEPNWARELELCARFLE------ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-- 174 (331)
T ss_dssp ------HHHHHHHHHHHHCSSCCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--
T ss_pred ------HHHHHHHHHHhccCcccHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--
Confidence 47899999999999 49999999999984 466777899999999999999 69999999999998
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHH
Q 005139 464 TNKGENHPAVASVFVRLADMYNRT--------------GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES 529 (712)
Q Consensus 464 ~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~ 529 (712)
+|....+|..++.++... +.++++++++.+++.+ .|....+|+.+..++..
T Consensus 175 ------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---------~P~d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 175 ------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---------DPNDQSAWFYHRWLLGA 239 (331)
T ss_dssp ------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---------STTCHHHHHHHHHHHHS
T ss_pred ------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHh
Confidence 899999999999999887 5689999999999998 45556777766666655
Q ss_pred c-----------ccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHH
Q 005139 530 M-----------NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYY---MLGNYSDSYDSFKNAISK 587 (712)
Q Consensus 530 ~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~ 587 (712)
. +.++++++++.+++++.++. ..++..++.+.. ..|..++...++.+.+++
T Consensus 240 ~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-------~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 240 GSGRCELSVEKSTVLQSELESCKELQELEPEN-------KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp SSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred ccCccccchHHHHHHHHHHHHHHHHHhhCccc-------chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 5 56889999999999887654 233433333322 357778888888888876
No 143
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.27 E-value=2e-09 Score=107.97 Aligned_cols=239 Identities=11% Similarity=-0.017 Sum_probs=183.8
Q ss_pred HHhCCHH-HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHhCCCCh
Q 005139 361 VQALQFS-EAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGD----------HEAALEHLVLASMTMIANDQDA 429 (712)
Q Consensus 361 ~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~ 429 (712)
...|.+. +|+.++.+++.+.|.. ..+++..+.++...+. +++++.++..++. .+|
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~--------ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~------~~P 105 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDF--------ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR------VNP 105 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTC--------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH------HCT
T ss_pred HHcCCCCHHHHHHHHHHHHHCchh--------HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHH------hCC
Confidence 3456665 7999999999887655 3467788888877665 6788888888874 466
Q ss_pred hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhc
Q 005139 430 EVASVDCSIGDTYLSLSR--YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK-LRESKSYCENALRIYEK 506 (712)
Q Consensus 430 ~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~ 506 (712)
....+++..+.++...++ +++++.++.+++++ +|.+..+|...+.+....|. ++++++++.+++..
T Consensus 106 Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--- 174 (331)
T 3dss_A 106 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--- 174 (331)
T ss_dssp TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---
Confidence 677899999999999994 89999999999998 89999999999999999999 69999999999998
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHc--------------ccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHc-
Q 005139 507 PVPGVPPEEIASGLTDVSSIYESM--------------NELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYML- 571 (712)
Q Consensus 507 ~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~- 571 (712)
+|....+|..++.++... +.++++++++.+++.+.|.. ..+|+.+..++...
T Consensus 175 ------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d-------~SaW~Y~r~ll~~~~ 241 (331)
T 3dss_A 175 ------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND-------QSAWFYHRWLLGAGS 241 (331)
T ss_dssp ------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHSSS
T ss_pred ------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHhcc
Confidence 455678899999998877 67899999999999987665 34665555555544
Q ss_pred ----------CCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 005139 572 ----------GNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACV---QRYSINEAVELFEEARSILEQECGPYH 638 (712)
Q Consensus 572 ----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~~~~~~~~~~ 638 (712)
+.++++++++.+++++. |. ...++..++.+.. ..|..++...++.+.+++ +
T Consensus 242 ~~~~~~~~~~~~l~~el~~~~elle~~-------pd-~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--------D 305 (331)
T 3dss_A 242 GRCELSVEKSTVLQSELESCKELQELE-------PE-NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--------D 305 (331)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHHHC-------TT-CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH--------C
T ss_pred CccccchHHHHHHHHHHHHHHHHHhhC-------cc-cchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh--------C
Confidence 34677777777777752 21 1233333333222 357788999999999999 9
Q ss_pred hhhHHHHHHHHHHHH
Q 005139 639 PDTLGVYSNLAGTYD 653 (712)
Q Consensus 639 p~~~~~~~~La~~~~ 653 (712)
|....-|..+..-+.
T Consensus 306 p~r~~~y~d~~~~~~ 320 (331)
T 3dss_A 306 PMRAAYLDDLRSKFL 320 (331)
T ss_dssp GGGHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHH
Confidence 988887777765443
No 144
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.27 E-value=1e-10 Score=101.00 Aligned_cols=122 Identities=14% Similarity=0.042 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 005139 516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK 595 (712)
Q Consensus 516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 595 (712)
.+..+..+|..+...|++++|+.+|++++.+.+.. ..++..+|.+|...|++++|+..|++++.+.
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------- 68 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED-------ARGYSNRAAALAKLMSFPEAIADCNKAIEKD------- 68 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------
Confidence 46789999999999999999999999999986654 4689999999999999999999999999871
Q ss_pred ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 005139 596 SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDA 654 (712)
Q Consensus 596 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~ 654 (712)
+....++..+|.++..+|++++|+..|++++.+...... .|....++..++.+...
T Consensus 69 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~--~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 69 -PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNN--GSSAREIDQLYYKASQQ 124 (126)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT--TTTHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCC--chhHHHHHHHHHHHHHh
Confidence 223578999999999999999999999999999322211 27777888888877654
No 145
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.27 E-value=1.9e-11 Score=115.15 Aligned_cols=158 Identities=13% Similarity=0.019 Sum_probs=115.3
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChh----
Q 005139 355 YLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE---- 430 (712)
Q Consensus 355 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---- 430 (712)
..+......|+++.|.+.+....... +..+..+..+|.++...|++++|+.+|.+++...........
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 80 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEK--------VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILL 80 (198)
T ss_dssp -------------CCCSGGGCCHHHH--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHH
T ss_pred chhhhhhhhhhccccCchhhCCHHHH--------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHH
Confidence 34455556677777777666544332 233557888899999999999999999988864433221111
Q ss_pred ------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139 431 ------VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY 504 (712)
Q Consensus 431 ------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 504 (712)
...++.++|.+|..+|++++|+.++++++.+ .|....+++.+|.+|..+|++++|+.+|++++.+
T Consensus 81 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~- 151 (198)
T 2fbn_A 81 DKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL- 151 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-
Confidence 1478999999999999999999999999998 7777899999999999999999999999999999
Q ss_pred hcCCCCCCChhHHHHHHHHHHHHHHcccHHHHH
Q 005139 505 EKPVPGVPPEEIASGLTDVSSIYESMNELEQAI 537 (712)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 537 (712)
.|....++..++.++...++..++.
T Consensus 152 --------~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 152 --------NPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp --------STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred --------CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678899999999998888776
No 146
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.27 E-value=4.6e-09 Score=116.56 Aligned_cols=408 Identities=9% Similarity=-0.073 Sum_probs=249.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHH
Q 005139 239 QKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTY 318 (712)
Q Consensus 239 ~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~ 318 (712)
.+.+..+++++... |.....+..+.......+.++.+...|++++... |... ..|...+..-
T Consensus 49 ~d~i~~lE~~l~~n---------p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-----P~~~----~lW~~Yi~~E 110 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ---------PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-----PLMA----NIWCMRLSLE 110 (679)
T ss_dssp SCHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC---------cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-----CCCH----HHHHHHHHHH
Confidence 44455566666542 3346677778888888999999999999999887 3332 2477777777
Q ss_pred HHcCC---HHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCH--------HHHHHHHHHHHHHHHh-cCCC
Q 005139 319 AMLGQ---LENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQF--------SEAQKFCQMALDIHKD-NGSP 386 (712)
Q Consensus 319 ~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--------~~A~~~~~~al~~~~~-~~~~ 386 (712)
...++ ++.+..+|++++.... .+| ....|..........++. +.....|++|+..... ..
T Consensus 111 ~~~~~~~~~~~v~~lfeRal~~~~-----~~~-sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~-- 182 (679)
T 4e6h_A 111 FDKMEELDAAVIEPVLARCLSKEL-----GNN-DLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEP-- 182 (679)
T ss_dssp HTC--CCCHHHHHHHHHHHTCSSS-----CCC-CHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCS--
T ss_pred HhhCCcchHHHHHHHHHHHHHhcC-----CCC-CHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccc--
Confidence 78888 9999999999988620 012 223555444444444443 3344677777765533 22
Q ss_pred CCHHHHHHHHHHHH------HHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHH---HHHHH----------HHHHcCC
Q 005139 387 ASLEEAADRRLMGL------ICETKGDHEAALEHLVLASMTMIANDQDAEVASVD---CSIGD----------TYLSLSR 447 (712)
Q Consensus 387 ~~~~~a~~~~~la~------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~~la~----------~~~~~g~ 447 (712)
.....-..|..+-. -+..+++.+.+..+|.+++.+ +.. ....++ ...-. +-....+
T Consensus 183 ~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i----P~~-~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~ 257 (679)
T 4e6h_A 183 KSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ----PMD-CLESMWQRYTQWEQDVNQLTARRHIGELSAQ 257 (679)
T ss_dssp SCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS----CCS-SHHHHHHHHHHHHHHHCTTTHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC----ccH-HHHHHHHHHHHHHHhcCcchHHHHHHHhhHH
Confidence 22222222222111 012345678888888888731 111 111111 11110 0011223
Q ss_pred HHHHHHHHHHHHHHHHHhcC--C----------------CCHHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHH
Q 005139 448 YDEAGFAYQKALTAFKTNKG--E----------------NHPAVASVFVRLADMYNRTG-------KLRESKSYCENALR 502 (712)
Q Consensus 448 ~~~A~~~~~~al~~~~~~~~--~----------------~~~~~~~~~~~la~~~~~~g-------~~~~A~~~~~~al~ 502 (712)
|+.|...+.+.-.+...+.. + ........|......-...+ ..+.....|++++.
T Consensus 258 y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~ 337 (679)
T 4e6h_A 258 YMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQ 337 (679)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHH
Confidence 44444444433222211110 0 01123344444443322221 13445678999998
Q ss_pred HHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHH-HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHH
Q 005139 503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAI-KLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSF 581 (712)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 581 (712)
.+ |....+|...+..+...|+.++|. ..|++|+..++.. ..++..++.+....|++++|..+|
T Consensus 338 ~~---------p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s-------~~Lwl~~a~~ee~~~~~e~aR~iy 401 (679)
T 4e6h_A 338 HV---------CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNS-------AVLAFSLSEQYELNTKIPEIETTI 401 (679)
T ss_dssp HT---------TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred Hc---------CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 84 345778999999999999999997 9999999876543 346778899999999999999999
Q ss_pred HHHHHHHHHh-------CCCC-------ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 005139 582 KNAISKLRAI-------GERK-------SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSN 647 (712)
Q Consensus 582 ~~al~~~~~~-------~~~~-------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~ 647 (712)
++++...... .+.. ......+|...+.+..+.|+.+.|...|.+|++.. .+....++..
T Consensus 402 ek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-------~~~~~~lyi~ 474 (679)
T 4e6h_A 402 LSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-------KLVTPDIYLE 474 (679)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-------GGSCTHHHHH
T ss_pred HHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-------CCCChHHHHH
Confidence 9999864211 0100 01244578888888889999999999999998741 1112344555
Q ss_pred HHHHHHHccc--------hhhhCCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcc
Q 005139 648 LAGTYDAIGR--------EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANS 701 (712)
Q Consensus 648 La~~~~~~g~--------~~~l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p 701 (712)
.|.+....++ ++......|+....+...+.+....|+.+.|. ..|+.++...|
T Consensus 475 ~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR-~lferal~~~~ 535 (679)
T 4e6h_A 475 NAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVK-SLFESSIDKIS 535 (679)
T ss_dssp HHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHH-HHHHHHTTTSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHH-HHHHHHHHhcC
Confidence 6666555443 23333446666777788888899999999999 99999998876
No 147
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.27 E-value=1.4e-10 Score=110.37 Aligned_cols=136 Identities=15% Similarity=0.126 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 005139 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344 (712)
Q Consensus 265 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 344 (712)
+..++.+|.++...|++++|+..|++++.. . ..+++.+|.+|...|++++|+.+|++++.+
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~--------~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------- 66 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQDP--------H----SRICFNIGCMYTILKNMTEAEKAFTRSINR------- 66 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSSSC--------C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcCC--------C----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Confidence 456778999999999999999999998621 2 236999999999999999999999999998
Q ss_pred CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC--------CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005139 345 TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS--------PASLEEAADRRLMGLICETKGDHEAALEHLV 416 (712)
Q Consensus 345 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~ 416 (712)
+|....++..+|.++...|++++|+.+|++++.+.+.... ...+....++..+|.++...|++++|+.+|+
T Consensus 67 -~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 145 (213)
T 1hh8_A 67 -DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 145 (213)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 5777889999999999999999999999999997765430 0112234578999999999999999999999
Q ss_pred HHHH
Q 005139 417 LASM 420 (712)
Q Consensus 417 ~al~ 420 (712)
+++.
T Consensus 146 ~al~ 149 (213)
T 1hh8_A 146 LATS 149 (213)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 9874
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.26 E-value=4.1e-11 Score=106.82 Aligned_cols=113 Identities=8% Similarity=0.007 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcc
Q 005139 452 GFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN 531 (712)
Q Consensus 452 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 531 (712)
...|++++.+ .|....+++.+|.++...|++++|+.+|++++.+ .|....++..+|.++...|
T Consensus 7 ~~~~~~al~~--------~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~lg~~~~~~g 69 (148)
T 2vgx_A 7 GGTIAMLNEI--------SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---------DHYDSRFFLGLGACRQAMG 69 (148)
T ss_dssp CCSHHHHTTC--------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHcC--------CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---------CcccHHHHHHHHHHHHHHh
Confidence 3456677766 8999999999999999999999999999999998 4445778999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139 532 ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKL 588 (712)
Q Consensus 532 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 588 (712)
++++|+.+|++++.+.+.. ..+++.+|.+|...|++++|+.+|++++.+.
T Consensus 70 ~~~~A~~~~~~al~l~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 70 QYDLAIHSYSYGAVMDIXE-------PRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp CHHHHHHHHHHHHHHSTTC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCC-------chHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999987655 2588999999999999999999999999874
No 149
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.26 E-value=2.9e-11 Score=113.89 Aligned_cols=155 Identities=15% Similarity=0.109 Sum_probs=117.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCc-
Q 005139 478 VRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQST- 556 (712)
Q Consensus 478 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~- 556 (712)
...+......|+++.|.+.+...... .+..+..+..+|.++...|++++|+.+|++++.+.+........
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 78 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEE---------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQI 78 (198)
T ss_dssp --------------CCCSGGGCCHHH---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHH
T ss_pred cchhhhhhhhhhccccCchhhCCHHH---------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhh
Confidence 34556666778888887777665544 34467889999999999999999999999999987664221111
Q ss_pred --------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 005139 557 --------VAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARS 628 (712)
Q Consensus 557 --------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 628 (712)
...++..+|.+|...|++++|+.++++++.+. +....+++.+|.+|..+|++++|+.+|++++.
T Consensus 79 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 79 LLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID--------KNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 13688999999999999999999999999861 22357899999999999999999999999999
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005139 629 ILEQECGPYHPDTLGVYSNLAGTYDAIGR 657 (712)
Q Consensus 629 ~~~~~~~~~~p~~~~~~~~La~~~~~~g~ 657 (712)
+ +|+...++..++.++..+++
T Consensus 151 ~--------~p~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 151 L--------NPNNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp H--------STTCHHHHHHHHHHHHHHHH
T ss_pred H--------CCCcHHHHHHHHHHHHHHHH
Confidence 9 88888899999999888876
No 150
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.25 E-value=6.7e-11 Score=104.64 Aligned_cols=108 Identities=10% Similarity=0.024 Sum_probs=97.7
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 005139 426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (712)
Q Consensus 426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (712)
...|.....++.+|.+++..|++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++.+
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-- 81 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM-- 81 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--
Confidence 457788889999999999999999999999999998 7888899999999999999999999999999998
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (712)
Q Consensus 506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (712)
.|....+++.+|.+|...|++++|+.+|++++.+.+..
T Consensus 82 -------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 119 (142)
T 2xcb_A 82 -------DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119 (142)
T ss_dssp -------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred -------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 33446678999999999999999999999999998865
No 151
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.25 E-value=3.3e-11 Score=120.31 Aligned_cols=170 Identities=16% Similarity=0.165 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 005139 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV 511 (712)
Q Consensus 432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 511 (712)
+..+..+|..++..|++++|+.+|++++.. .|....++.++|.+|..+|++++|+..|++++.+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-------- 67 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-------- 67 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence 455667777777777777777777777776 5666677777777777777777777777777765
Q ss_pred CChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHH------------------------HHHHHHHH
Q 005139 512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAG------------------------IEAQMGVM 567 (712)
Q Consensus 512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~------------------------~~~~la~~ 567 (712)
.|....+++.+|.+|..+|++++|+.+|++++.+.+........... +...++.+
T Consensus 68 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l 146 (281)
T 2c2l_A 68 -DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL 146 (281)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33345667777777777777777777777777777654221111111 11122222
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHH
Q 005139 568 YYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR-YSINEAVELFEEARS 628 (712)
Q Consensus 568 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~ 628 (712)
..|++++|++.++++++. .+ ........++.++... +.+++|..+|.++.+
T Consensus 147 --~~~~~~~A~~~~~~al~~-------~p-~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 147 --IAAERERELEECQRNHEG-------HE-DDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp --HHHHHHHHHTTTSGGGTT-------TS-CHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred --HHHHHHHHHHHHHhhhcc-------cc-chhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 256777777777777653 11 1224445555555554 667788888877755
No 152
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.24 E-value=7.9e-11 Score=103.51 Aligned_cols=113 Identities=17% Similarity=0.057 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCC-----cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 005139 516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS-----TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA 590 (712)
Q Consensus 516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 590 (712)
.+..+..+|..++..|+|++|+..|++|+++.+..+.... ..+.+|.++|.++..+|+|++|+..|.+|++++..
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 3667889999999999999999999999999987432111 23448999999999999999999999999998777
Q ss_pred hCCCCChHHHHHH----HHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139 591 IGERKSAFFGVAL----NQMGLACVQRYSINEAVELFEEARSI 629 (712)
Q Consensus 591 ~~~~~~~~~~~~~----~~lg~~~~~~g~~~~A~~~~~~al~~ 629 (712)
.+...+ ....+| +++|.++..+|++++|+..|++++++
T Consensus 90 ~~e~~p-d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 90 RGELNQ-DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HCCTTS-THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccCCC-chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 766654 456788 99999999999999999999999999
No 153
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.23 E-value=2.2e-10 Score=104.10 Aligned_cols=108 Identities=16% Similarity=0.156 Sum_probs=95.4
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 005139 426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (712)
Q Consensus 426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (712)
...+..+..+..+|.+++..|++++|+.+|++++.+ .|....++..+|.+|...|++++|+.+|++++.+
T Consensus 5 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-- 74 (164)
T 3sz7_A 5 MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSASGQHEKAAEDAELATVV-- 74 (164)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--
Confidence 345667888999999999999999999999999998 7777889999999999999999999999999998
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139 506 KPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (712)
Q Consensus 506 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (712)
.|....+++.+|.+|..+|++++|+.+|++++.+.+..
T Consensus 75 -------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 75 -------DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp -------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred -------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 34457789999999999999999999999999988765
No 154
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.22 E-value=1.2e-10 Score=101.24 Aligned_cols=124 Identities=12% Similarity=0.066 Sum_probs=108.7
Q ss_pred CCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 005139 511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA 590 (712)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 590 (712)
...+.....+..+|.++...|++++|+.+|++++...+.. ..++..+|.++...|++++|+.+|++++.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-- 80 (133)
T 2lni_A 10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD-------AKLYSNRAACYTKLLEFQLALKDCEECIQLE-- 80 (133)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC-------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--
Confidence 3456678899999999999999999999999999864432 4688999999999999999999999999862
Q ss_pred hCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005139 591 IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657 (712)
Q Consensus 591 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~ 657 (712)
+....++..+|.++...|++++|+.+|++++.+ +|....++..++.++..+|+
T Consensus 81 ------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 81 ------PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL--------DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGTHHHHHHHHHHHHHTC
T ss_pred ------CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhcC
Confidence 223478999999999999999999999999998 88888999999999988764
No 155
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.21 E-value=1.2e-09 Score=109.83 Aligned_cols=238 Identities=9% Similarity=-0.047 Sum_probs=185.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhcCCCCC
Q 005139 310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQAL-QFSEAQKFCQMALDIHKDNGSPAS 388 (712)
Q Consensus 310 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~ 388 (712)
++..+..+....+..++|+.++.+++.+ +|....+|+..+.++...| .+++++.++..++...++..
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~--------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny---- 123 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRM--------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSY---- 123 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCH----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcH----
Confidence 3444455555566678999999999999 7999999999999999999 59999999999998776553
Q ss_pred HHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHH--------HHHHHHHHH
Q 005139 389 LEEAADRRLMGLICETK-G-DHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYD--------EAGFAYQKA 458 (712)
Q Consensus 389 ~~~a~~~~~la~~~~~~-g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~a 458 (712)
.+++..+.++... + ++++++.++.+++ ..++....++...+.++...|.++ ++++++.++
T Consensus 124 ----~aW~hR~wlL~~l~~~~~~~EL~~~~k~L------~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~ 193 (349)
T 3q7a_A 124 ----QVWHHRLLLLDRISPQDPVSEIEYIHGSL------LPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEM 193 (349)
T ss_dssp ----HHHHHHHHHHHHHCCSCCHHHHHHHHHHT------SSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhcCCChHHHHHHHHHHH------HhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHH
Confidence 4788999999888 8 8999999999987 567777889999999999988888 999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcc
Q 005139 459 LTAFKTNKGENHPAVASVFVRLADMYNRTGK-------LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN 531 (712)
Q Consensus 459 l~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 531 (712)
++. ++.+..+|...+.++...++ ++++++++.+++.+ .|....+|+.+..++...|
T Consensus 194 I~~--------dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~---------~P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 194 LRV--------DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL---------IPHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp HHH--------CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHTT
T ss_pred HHh--------CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHhcC
Confidence 998 88899999999999999987 79999999999998 4556778888888888877
Q ss_pred cHHH------------HHH-HHHHHHHHHHhCCCC------CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005139 532 ELEQ------------AIK-LLQKALKIYNDAPGQ------QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAIS 586 (712)
Q Consensus 532 ~~~~------------A~~-~~~~al~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 586 (712)
+... .+. .+......+....+. ......++..|+.+|...|+.++|.++++...+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 257 LPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 6400 000 011122222222221 133445778899999999999999988887653
No 156
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.21 E-value=2.4e-10 Score=98.70 Aligned_cols=124 Identities=21% Similarity=0.290 Sum_probs=98.8
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005139 427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (712)
Q Consensus 427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (712)
..+.....+..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.++++++...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-- 76 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL--------NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-- 76 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--
Confidence 34556777888888888888999999888888887 56667788888888888999999999998888872
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCH
Q 005139 507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNY 574 (712)
Q Consensus 507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 574 (712)
+....++..+|.++...|++++|+.+|++++.+.+.. ..++..++.++...|++
T Consensus 77 -------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 77 -------PAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN-------ETYKSNLKIAELKLREA 130 (131)
T ss_dssp -------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------HHHHHHHHHHHHHHTTC
T ss_pred -------ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc-------hHHHHHHHHHHHHHhcC
Confidence 2336678888888989999999999998888875433 35677888888887765
No 157
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.20 E-value=2e-10 Score=104.08 Aligned_cols=126 Identities=17% Similarity=0.084 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC------------ChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005139 390 EEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQ------------DAEVASVDCSIGDTYLSLSRYDEAGFAYQK 457 (712)
Q Consensus 390 ~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 457 (712)
..+..+..+|..++..|+|++|+.+|.+++........ .+....++.++|.+|..+|++++|+.++++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 44667899999999999999999999999987543211 456678999999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHH-HHHHHHHHHHHHccc
Q 005139 458 ALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIA-SGLTDVSSIYESMNE 532 (712)
Q Consensus 458 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~ 532 (712)
++.+ .|....+++.+|.+|..+|++++|+..|++++.+ .|... .+...++.+....++
T Consensus 89 al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l---------~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 89 VLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN---------HPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp HHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CGGGHHHHHHHHHHHHHHHHH
T ss_pred HHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHHHHHH
Confidence 9999 7888999999999999999999999999999999 33333 445556655554443
No 158
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.20 E-value=1.7e-10 Score=100.26 Aligned_cols=123 Identities=18% Similarity=0.267 Sum_probs=88.2
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005139 427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (712)
Q Consensus 427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (712)
..+.....+..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-- 80 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-- 80 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--
Confidence 34556677777788888888888888888877776 55556777778888888888888888888877762
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCC
Q 005139 507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN 573 (712)
Q Consensus 507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 573 (712)
+....++..+|.++...|++++|+.+|++++.+.+.. ..++..++.++..+|+
T Consensus 81 -------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 81 -------PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC-------KEAADGYQRCMMAQYN 133 (133)
T ss_dssp -------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG-------THHHHHHHHHHHHHTC
T ss_pred -------CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc-------hHHHHHHHHHHHHhcC
Confidence 2345667778888888888888888888877765543 2456667777766553
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.19 E-value=4.2e-10 Score=102.24 Aligned_cols=108 Identities=17% Similarity=0.178 Sum_probs=97.6
Q ss_pred CHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 005139 261 SLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQ 340 (712)
Q Consensus 261 ~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 340 (712)
.+..+..+..+|.+++..|+|++|+.+|++++.+. +.++ .+++.+|.+|...|++++|+.+|++++.+
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 74 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-----PANP----IYLSNRAAAYSASGQHEKAAEDAELATVV--- 74 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CcCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh---
Confidence 35678889999999999999999999999999986 4443 35999999999999999999999999999
Q ss_pred HhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Q 005139 341 VLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385 (712)
Q Consensus 341 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 385 (712)
+|....+++.+|.+|...|++++|+.+|++++.+.+....
T Consensus 75 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 75 -----DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred -----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 6788899999999999999999999999999999877653
No 160
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.18 E-value=6.3e-10 Score=96.01 Aligned_cols=122 Identities=23% Similarity=0.235 Sum_probs=107.2
Q ss_pred ChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q 005139 513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIG 592 (712)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 592 (712)
.+.....+..+|.++...|++++|+.+|++++...+.. ..++..+|.++...|++++|+.++++++...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---- 76 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN-------AVYFCNRAAAYSKLGNYAGAVQDCERAICID---- 76 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHhhchHHHHHHHHHHHhcC----
Confidence 45678889999999999999999999999999875433 4688899999999999999999999999861
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005139 593 ERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657 (712)
Q Consensus 593 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~ 657 (712)
+....++..+|.++...|++++|+.+|++++.+ .|....++..++.++..+|+
T Consensus 77 ----~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 77 ----PAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL--------DPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHHTT
T ss_pred ----ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHhc
Confidence 122478999999999999999999999999998 88888899999999988775
No 161
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.17 E-value=6.5e-11 Score=126.94 Aligned_cols=152 Identities=18% Similarity=0.194 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcc------cchHHHHHHH
Q 005139 238 PQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQ------EHALAKFAGH 311 (712)
Q Consensus 238 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~~~~~~~~~~ 311 (712)
+++|+..|..++... +..+.++..+|.+++..|+|++|+..|++++.+.+..... ........++
T Consensus 250 ~~~A~~~~~~~~~~~---------~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~ 320 (457)
T 1kt0_A 250 FEKAKESWEMDTKEK---------LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAF 320 (457)
T ss_dssp EECCCCGGGSCHHHH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHH
T ss_pred cccCcchhhcCHHHH---------HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHH
Confidence 667777777776654 6678899999999999999999999999999986331100 0011124579
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 005139 312 MQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEE 391 (712)
Q Consensus 312 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 391 (712)
+++|.+|..+|+|++|+.+|++++.+ +|....+++++|.+|..+|++++|+..|++++++.+...
T Consensus 321 ~nla~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~------- 385 (457)
T 1kt0_A 321 LNLAMCYLKLREYTKAVECCDKALGL--------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK------- 385 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----------
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-------
Confidence 99999999999999999999999998 678889999999999999999999999999999876554
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHH
Q 005139 392 AADRRLMGLICETKGDHEAALEH 414 (712)
Q Consensus 392 a~~~~~la~~~~~~g~~~~A~~~ 414 (712)
.++..++.++...+++++|...
T Consensus 386 -~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 386 -AARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHH
Confidence 3788999999999999888754
No 162
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.17 E-value=8.6e-11 Score=126.00 Aligned_cols=156 Identities=13% Similarity=0.156 Sum_probs=126.2
Q ss_pred ccccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCC------CCHHHHHHHHHHH
Q 005139 199 KRKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGK------PSLELVMCLHVIA 272 (712)
Q Consensus 199 ~~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~------~~~~~~~~l~~la 272 (712)
..++|.+|++.+.......|..+..+..+|..++..|+ |++|+..|.+|+.+........ ..+....++.++|
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~-~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGK-YMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 44566677766666667788899999999999999997 9999999999999873210000 0123368899999
Q ss_pred HHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 005139 273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET 352 (712)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 352 (712)
.+|..+|+|++|+.+|++++.+. +.++ .+++.+|.+|..+|++++|+..|++++++ +|....+
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~-----p~~~----~a~~~~g~a~~~~g~~~~A~~~~~~al~l--------~P~~~~a 387 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLD-----SANE----KGLYRRGEAQLLMNEFESAKGDFEKVLEV--------NPQNKAA 387 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-----TTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------C----CH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcC-----CccH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHH
Confidence 99999999999999999999986 4443 35999999999999999999999999998 6788889
Q ss_pred HHHHHHHHHHhCCHHHHHHH
Q 005139 353 CRYLAEAHVQALQFSEAQKF 372 (712)
Q Consensus 353 ~~~la~~~~~~g~~~~A~~~ 372 (712)
+..++.++...+++++|...
T Consensus 388 ~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 388 RLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888753
No 163
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.17 E-value=1.5e-10 Score=102.32 Aligned_cols=112 Identities=11% Similarity=-0.014 Sum_probs=97.4
Q ss_pred cccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHH
Q 005139 209 DVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVL 288 (712)
Q Consensus 209 ~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~ 288 (712)
.+..+...+|.....++.+|..++..|+ +++|+.+|++++... |....++..+|.+|...|++++|+.+|
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~---------p~~~~~~~~lg~~~~~~g~~~~A~~~~ 75 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGK-WDDAQKIFQALCMLD---------HYDARYFLGLGACRQSLGLYEQALQSY 75 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHHhC---------CccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 5566777889999999999999999997 999999999999864 444778899999999999999999999
Q ss_pred HHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139 289 EQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQK 339 (712)
Q Consensus 289 ~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 339 (712)
++++.+. +.++. +++.+|.+|...|++++|+.+|++++.+..
T Consensus 76 ~~al~~~-----p~~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 76 SYGALMD-----INEPR----FPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HHHHHHC-----TTCTH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcC-----CCCcH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999986 55554 489999999999999999999999999853
No 164
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.16 E-value=7.8e-10 Score=100.17 Aligned_cols=127 Identities=14% Similarity=0.130 Sum_probs=106.3
Q ss_pred hHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCC-----C------CCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005139 515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPG-----Q------QSTVAGIEAQMGVMYYMLGNYSDSYDSFKN 583 (712)
Q Consensus 515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 583 (712)
..+..+..+|..++..|+|++|+..|.+++.+.+.... . .+....++.++|.+|..+|++++|+..+++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 45788999999999999999999999999998654211 0 223457899999999999999999999999
Q ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhH-HHHHHHHHHHHHccc
Q 005139 584 AISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTL-GVYSNLAGTYDAIGR 657 (712)
Q Consensus 584 al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~-~~~~~La~~~~~~g~ 657 (712)
++.+ .+....+++.+|.+|..+|++++|+..|++++.+ +|+.. .+...|+.+....++
T Consensus 89 al~~--------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 89 VLKR--------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--------HPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp HHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CGGGHHHHHHHHHHHHHHHHH
T ss_pred HHhc--------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHHH
Confidence 9997 2334589999999999999999999999999999 88887 667777777665544
No 165
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.12 E-value=1.6e-09 Score=92.59 Aligned_cols=118 Identities=22% Similarity=0.351 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 005139 516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK 595 (712)
Q Consensus 516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 595 (712)
...++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.+|++++...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------- 73 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD------- 73 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------
Confidence 46789999999999999999999999999875432 3578899999999999999999999998751
Q ss_pred ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcc
Q 005139 596 SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG 656 (712)
Q Consensus 596 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g 656 (712)
+....++..+|.++...|++++|+.+|++++.+ +|....++..++.++...|
T Consensus 74 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 74 -PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHC
T ss_pred -CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHhcc
Confidence 112468889999999999999999999999998 8888899999999987765
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.12 E-value=8.7e-10 Score=96.45 Aligned_cols=105 Identities=21% Similarity=0.263 Sum_probs=95.4
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Q 005139 429 AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPV 508 (712)
Q Consensus 429 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 508 (712)
+..+..+..+|.+++..|++++|+.+|++++.+ .|....++..+|.++...|++++|+.+|++++.+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----- 72 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL----- 72 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----
Confidence 345678899999999999999999999999998 7777889999999999999999999999999998
Q ss_pred CCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139 509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (712)
Q Consensus 509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (712)
.|....++..+|.++...|++++|+.+|++++.+.+..
T Consensus 73 ----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 110 (137)
T 3q49_B 73 ----DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 110 (137)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred ----CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhH
Confidence 34457789999999999999999999999999999874
No 167
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.11 E-value=9.1e-09 Score=101.47 Aligned_cols=249 Identities=14% Similarity=0.064 Sum_probs=169.0
Q ss_pred HHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 005139 273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET 352 (712)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 352 (712)
.-.+..|+|..++.-..+ +. +..+. .....+.++|..+|++.... ...|. ..+
T Consensus 21 kn~fy~G~yq~~i~e~~~---~~-----~~~~~---~~~~~~~Rs~iAlg~~~~~~---------------~~~~~-~~a 73 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEK---FS-----KVTDN---TLLFYKAKTLLALGQYQSQD---------------PTSKL-GKV 73 (310)
T ss_dssp HHHHTTTCHHHHTHHHHT---SS-----CCCCH---HHHHHHHHHHHHTTCCCCCC---------------SSSTT-HHH
T ss_pred HHHHHhhHHHHHHHHHHh---cC-----ccchH---HHHHHHHHHHHHcCCCccCC---------------CCCHH-HHH
Confidence 445668999999985433 21 22222 23566778888889887421 11232 233
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCC--hh
Q 005139 353 CRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQD--AE 430 (712)
Q Consensus 353 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~ 430 (712)
...++..+. ++ |+..+++.+... ... ...+..+|.++...|++++|+.++.+++ +.. ..
T Consensus 74 ~~~la~~~~--~~---a~~~l~~l~~~~-----~~~---~~~~~~la~i~~~~g~~eeAL~~l~~~i------~~~~~~~ 134 (310)
T 3mv2_B 74 LDLYVQFLD--TK---NIEELENLLKDK-----QNS---PYELYLLATAQAILGDLDKSLETCVEGI------DNDEAEG 134 (310)
T ss_dssp HHHHHHHHT--TT---CCHHHHHTTTTS-----CCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHH------TSSCSTT
T ss_pred HHHHHHHhc--cc---HHHHHHHHHhcC-----CCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHh------ccCCCcC
Confidence 444444432 22 666666655321 111 1245689999999999999999999886 333 37
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHH
Q 005139 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP------AVASVFVRLADMYNRTG--KLRESKSYCENALR 502 (712)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~ 502 (712)
...++..++.++..+|+.+.|.+.++++.+. +| +.......-|++....| ++.+|..+|+++..
T Consensus 135 ~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--------~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~ 206 (310)
T 3mv2_B 135 TTELLLLAIEVALLNNNVSTASTIFDNYTNA--------IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ 206 (310)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 7888899999999999999999999998877 55 33344444455577667 99999999999755
Q ss_pred HHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCC---CCcHHHHHHHHHHHHHHcCCHHHHHH
Q 005139 503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ---QSTVAGIEAQMGVMYYMLGNYSDSYD 579 (712)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~ 579 (712)
.+. .......+.+ ++..+|++++|...++.+++..+..... .+.-+.++.+++.+...+|+ +|.+
T Consensus 207 ~~p-------~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~ 274 (310)
T 3mv2_B 207 TFP-------TWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTED 274 (310)
T ss_dssp TSC-------SHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHH
T ss_pred hCC-------CcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHH
Confidence 421 1112223333 8999999999999999888887653111 13446788888888889998 8888
Q ss_pred HHHHHHHH
Q 005139 580 SFKNAISK 587 (712)
Q Consensus 580 ~~~~al~~ 587 (712)
+++++.+.
T Consensus 275 l~~qL~~~ 282 (310)
T 3mv2_B 275 LTNQLVKL 282 (310)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 88887764
No 168
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.11 E-value=3.8e-10 Score=103.93 Aligned_cols=122 Identities=12% Similarity=0.178 Sum_probs=102.4
Q ss_pred HHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHH
Q 005139 484 YNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQ 563 (712)
Q Consensus 484 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 563 (712)
+...|++++|+.++++++.. .|....++..+|.+|...|++++|+.+|++++.+.+.. ..++..
T Consensus 20 ~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~ 83 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA---------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN-------AELYAA 83 (177)
T ss_dssp CC-----CCCCHHHHHHHHH---------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC-------HHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHh---------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHHHHH
Confidence 35678999999999999998 33446789999999999999999999999999987654 467889
Q ss_pred HHHH-HHHcCCH--HHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139 564 MGVM-YYMLGNY--SDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (712)
Q Consensus 564 la~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 629 (712)
+|.+ +...|++ ++|+.+|++++.+. +....++..+|.++...|++++|+.+|++++.+
T Consensus 84 la~~l~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 84 LATVLYYQASQHMTAQTRAMIDKALALD--------SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 9999 8899999 99999999999861 223478999999999999999999999999987
No 169
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.11 E-value=5e-10 Score=95.80 Aligned_cols=100 Identities=13% Similarity=0.038 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCC
Q 005139 434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPP 513 (712)
Q Consensus 434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 513 (712)
.++.+|..+...|++++|+..|++++.. .|....++..+|.++...|++++|+..|++++++ .
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---------~ 81 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML---------D 81 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------C
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------C
Confidence 4678899999999999999999999998 8888999999999999999999999999999999 4
Q ss_pred hhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139 514 EEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (712)
Q Consensus 514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (712)
|....++..+|.++...|++++|+..|++++++.+..
T Consensus 82 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 82 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 4457789999999999999999999999999876643
No 170
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.10 E-value=2.9e-10 Score=104.71 Aligned_cols=122 Identities=16% Similarity=0.220 Sum_probs=104.6
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHH
Q 005139 442 YLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLT 521 (712)
Q Consensus 442 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 521 (712)
+...|++++|+..+++++.. .|....++..+|.+|...|++++|+.+|++++.+... ...++.
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~ 82 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE---------NAELYA 82 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS---------CHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---------CHHHHH
Confidence 34678999999999999998 7777889999999999999999999999999999533 367789
Q ss_pred HHHHH-HHHcccH--HHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139 522 DVSSI-YESMNEL--EQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587 (712)
Q Consensus 522 ~la~~-~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 587 (712)
.+|.+ +...|++ ++|+.+|++++.+.+.. ..++..+|.+|...|++++|+.+|++++.+
T Consensus 83 ~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 83 ALATVLYYQASQHMTAQTRAMIDKALALDSNE-------ITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 99999 8899999 99999999999986543 467889999999999999999999999985
No 171
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.10 E-value=2.1e-09 Score=91.81 Aligned_cols=118 Identities=27% Similarity=0.396 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 005139 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG 510 (712)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 510 (712)
...++..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------ 73 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD------ 73 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------
Confidence 3567788888888899999999999888887 55556788888999999999999999998888872
Q ss_pred CCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcC
Q 005139 511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG 572 (712)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g 572 (712)
+....++..+|.++...|++++|+.++++++.+.+.. ..++..++.++...|
T Consensus 74 ---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 74 ---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-------AEAKQNLGNAKQKQG 125 (125)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHC
T ss_pred ---CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHhcc
Confidence 2235678888999999999999999998888775433 346667777766543
No 172
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.10 E-value=1.8e-11 Score=131.91 Aligned_cols=179 Identities=10% Similarity=0.076 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 005139 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG 510 (712)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 510 (712)
.+..+..+|.++...|++++|+.+|++++++ .|....++.++|.+|..+|++++|+.+|++++++
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------- 69 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL------- 69 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------
Confidence 3445666777788888888888888888887 6777788888888888888888888888888877
Q ss_pred CCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH--HHHcCCHHHHHHHHH------
Q 005139 511 VPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM--YYMLGNYSDSYDSFK------ 582 (712)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~------ 582 (712)
.|....++.++|.+|..+|++++|+.+|++++++.+... .++..++.+ +...|++++|+..++
T Consensus 70 --~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~-------~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~ 140 (477)
T 1wao_1 70 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK-------DAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 140 (477)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCT-------THHHHHHHHHHHHHHHHHCCC------CCSTT
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHHHHHHHHHhccccccchhH
Confidence 344567788888888888888888888888888755431 245556666 777788888888887
Q ss_pred -----HHHHHHHHhCCCCChH---HHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHh
Q 005139 583 -----NAISKLRAIGERKSAF---FGVALNQMGLACVQRYS--INEAVELFEEARSILEQE 633 (712)
Q Consensus 583 -----~al~~~~~~~~~~~~~---~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~~~~ 633 (712)
+++.+.....+..... ....+..+...+...+. ...+..++.++.+++...
T Consensus 141 ~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~e 201 (477)
T 1wao_1 141 DSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKL 201 (477)
T ss_dssp TCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHTS
T ss_pred hhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHccC
Confidence 4444322222111111 11222333333333333 455566778887776653
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.09 E-value=3.2e-11 Score=129.91 Aligned_cols=177 Identities=14% Similarity=0.063 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 005139 391 EAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENH 470 (712)
Q Consensus 391 ~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 470 (712)
.+..+..+|.++...|++++|+.+|++++.. .|....++.++|.+|..+|++++|+.++++++++ +
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~ 70 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIEL------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--------D 70 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------C
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------C
Confidence 3446777889999999999999999999864 4556889999999999999999999999999998 7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHH--HHHcccHHHHHHHHH-------
Q 005139 471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSI--YESMNELEQAIKLLQ------- 541 (712)
Q Consensus 471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~------- 541 (712)
|....++.++|.+|..+|++++|+.+|++++++.. ....++..++.+ +..+|++++|+..++
T Consensus 71 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p---------~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~ 141 (477)
T 1wao_1 71 KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKP---------HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVD 141 (477)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST---------TCTTHHHHHHHHHHHHHHHHHCCC------CCSTTT
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHh
Confidence 88889999999999999999999999999999832 234456777777 889999999999999
Q ss_pred ----HHHHHHHhCCCCCCc----HHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHH
Q 005139 542 ----KALKIYNDAPGQQST----VAGIEAQMGVMYYMLGNY--SDSYDSFKNAISKLRA 590 (712)
Q Consensus 542 ----~al~~~~~~~~~~~~----~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~ 590 (712)
+++.+.+...+.... ....+..+...+...+.+ ..+..++.++.+++..
T Consensus 142 ~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~v~~L~~~a~eil~~ 200 (477)
T 1wao_1 142 SLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSK 200 (477)
T ss_dssp CCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcc
Confidence 666665554333221 122333444555554443 4455577777777664
No 174
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.09 E-value=1.1e-09 Score=113.56 Aligned_cols=129 Identities=15% Similarity=0.115 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC----------CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139 394 DRRLMGLICETKGDHEAALEHLVLASMTMIAN----------DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFK 463 (712)
Q Consensus 394 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 463 (712)
.+..+|..+...|++++|+.+|++++.+.... ...+....++.++|.+|..+|++++|+.++++++++
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-- 302 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-- 302 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--
Confidence 57789999999999999999999999765432 145677899999999999999999999999999998
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHH
Q 005139 464 TNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKL 539 (712)
Q Consensus 464 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 539 (712)
.|....+++.+|.+|..+|++++|+.+|++++++ .|....++..++.++...++++++.+.
T Consensus 303 ------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l---------~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 303 ------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI---------APEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888899999999999999999999999999999 333467788999999999988887653
No 175
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.08 E-value=1.7e-09 Score=93.38 Aligned_cols=123 Identities=17% Similarity=0.239 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCC
Q 005139 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVP 509 (712)
Q Consensus 430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 509 (712)
..+..+..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++.+....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-- 71 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-- 71 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc--
Confidence 34677899999999999999999999999998 66678899999999999999999999999999997542
Q ss_pred CCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Q 005139 510 GVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYM 570 (712)
Q Consensus 510 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~ 570 (712)
....+....++..+|.++...|++++|+.+|++++.+.+. ......++.+...
T Consensus 72 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~l~~~~~~ 124 (131)
T 1elr_A 72 REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT--------PDVLKKCQQAEKI 124 (131)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHH
Confidence 2223334788999999999999999999999999986431 2344555555443
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.07 E-value=4.7e-09 Score=90.51 Aligned_cols=124 Identities=15% Similarity=0.177 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 005139 516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK 595 (712)
Q Consensus 516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 595 (712)
.+..+..+|.++...|++++|+.+|++++...+.. ..++..+|.++...|++++|+.+|++++.+...... .
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~ 74 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN-------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE-D 74 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT-C
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc-------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccch-h
Confidence 46778999999999999999999999999885443 467889999999999999999999999998764322 2
Q ss_pred ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcc
Q 005139 596 SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIG 656 (712)
Q Consensus 596 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g 656 (712)
......++..+|.++...|++++|+.+|++++.+ .| .......++.++...+
T Consensus 75 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--------HR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CC-CHHHHHHHHHHHHHHH
Confidence 2333678999999999999999999999999997 55 3566777777766544
No 177
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.05 E-value=1.4e-08 Score=100.21 Aligned_cols=252 Identities=14% Similarity=0.057 Sum_probs=163.3
Q ss_pred cccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC
Q 005139 200 RKGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLG 279 (712)
Q Consensus 200 ~~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g 279 (712)
.|+|.+.+..........+. .....+.+.++..|+ +... ..+.|. ..++..++..+. +
T Consensus 26 ~G~yq~~i~e~~~~~~~~~~--~~~~~~~Rs~iAlg~-~~~~----------------~~~~~~-~~a~~~la~~~~--~ 83 (310)
T 3mv2_B 26 TGNFVQCLQEIEKFSKVTDN--TLLFYKAKTLLALGQ-YQSQ----------------DPTSKL-GKVLDLYVQFLD--T 83 (310)
T ss_dssp TTCHHHHTHHHHTSSCCCCH--HHHHHHHHHHHHTTC-CCCC----------------CSSSTT-HHHHHHHHHHHT--T
T ss_pred hhHHHHHHHHHHhcCccchH--HHHHHHHHHHHHcCC-CccC----------------CCCCHH-HHHHHHHHHHhc--c
Confidence 45666666433333333333 355556667777775 5421 111122 223333444432 2
Q ss_pred CHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 005139 280 QYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEA 359 (712)
Q Consensus 280 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 359 (712)
. |+..|++.+... ...+. .+..+|.++...|++++|+.++.+++... ..+....++..++.+
T Consensus 84 ~---a~~~l~~l~~~~-----~~~~~----~~~~la~i~~~~g~~eeAL~~l~~~i~~~------~~~~~lea~~l~vqi 145 (310)
T 3mv2_B 84 K---NIEELENLLKDK-----QNSPY----ELYLLATAQAILGDLDKSLETCVEGIDND------EAEGTTELLLLAIEV 145 (310)
T ss_dssp T---CCHHHHHTTTTS-----CCCHH----HHHHHHHHHHHHTCHHHHHHHHHHHHTSS------CSTTHHHHHHHHHHH
T ss_pred c---HHHHHHHHHhcC-----CCCcH----HHHHHHHHHHHcCCHHHHHHHHHHHhccC------CCcCcHHHHHHHHHH
Confidence 2 778888776542 12221 35789999999999999999999986540 013778899999999
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhCCCChh--HHHHH
Q 005139 360 HVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG--DHEAALEHLVLASMTMIANDQDAE--VASVD 435 (712)
Q Consensus 360 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~--~~~~~ 435 (712)
+...|+.+.|.+.++++.+..+.... .-....+...-+++....| ++.+|..+|+++. ...+. ....+
T Consensus 146 ~L~~~r~d~A~k~l~~~~~~~~d~~~--~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~------~~~p~~~~~~lL 217 (310)
T 3mv2_B 146 ALLNNNVSTASTIFDNYTNAIEDTVS--GDNEMILNLAESYIKFATNKETATSNFYYYEELS------QTFPTWKTQLGL 217 (310)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSCHHHH--HHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHH------TTSCSHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhcCccccc--cchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHH------HhCCCcccHHHH
Confidence 99999999999999998776541000 0011122333355566667 9999999999875 33343 23333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139 436 CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGEN--HPAVASVFVRLADMYNRTGKLRESKSYCENALRIY 504 (712)
Q Consensus 436 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 504 (712)
++ ++..+|++++|...++.+++........+ .|..+.++.+++.+...+|+ +|.+++.++....
T Consensus 218 ln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 218 LN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 33 89999999999999997776632211000 25578889899999999998 8899999998883
No 178
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.05 E-value=2.2e-09 Score=93.84 Aligned_cols=101 Identities=14% Similarity=0.019 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Q 005139 392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP 471 (712)
Q Consensus 392 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 471 (712)
+..+..+|.++...|++++|+.+|.+++.. .|....++..+|.++..+|++++|+.++++++.+ .|
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p 74 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--------DG 74 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------Cc
Confidence 457899999999999999999999999854 3455788999999999999999999999999998 77
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005139 472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (712)
Q Consensus 472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (712)
....++..+|.++...|++++|+.+|++++.+...
T Consensus 75 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 75 QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 78889999999999999999999999999999655
No 179
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.04 E-value=1.1e-09 Score=93.62 Aligned_cols=100 Identities=16% Similarity=0.014 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Q 005139 267 CLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETD 346 (712)
Q Consensus 267 ~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 346 (712)
.++.+|..+...|++++|+..|++++.+. +.++. +++.+|.++...|++++|+..|++++++ +
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----P~~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~ 81 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-----PEREE----AWRSLGLTQAENEKDGLAIIALNHARML--------D 81 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence 45678999999999999999999999986 55443 5899999999999999999999999999 7
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Q 005139 347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDN 383 (712)
Q Consensus 347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 383 (712)
|....++..+|.++...|++++|+..+++++++.+..
T Consensus 82 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 82 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 8888899999999999999999999999999877643
No 180
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.03 E-value=4e-09 Score=89.04 Aligned_cols=114 Identities=14% Similarity=0.167 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC
Q 005139 516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK 595 (712)
Q Consensus 516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 595 (712)
.+..+..+|.++...|++++|+.+|++++...+.. ..++..+|.++...|++++|+.++++++.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------- 68 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN-------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK------- 68 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-------
Confidence 35678999999999999999999999999875543 4688899999999999999999999999862
Q ss_pred ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH
Q 005139 596 SAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTY 652 (712)
Q Consensus 596 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~ 652 (712)
+....++..+|.++...|++++|+.+|++++.+ +|....++..++.+.
T Consensus 69 -~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 69 -PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH--------EANNPQLKEGLQNME 116 (118)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------CTTCHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHhh
Confidence 223478999999999999999999999999988 788888888888765
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.03 E-value=2e-09 Score=111.56 Aligned_cols=132 Identities=18% Similarity=0.232 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNK--------GENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (712)
Q Consensus 432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (712)
+..+..+|..++..|++++|+..|++++++..... ....+....++.++|.+|..+|++++|+.++++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 45678899999999999999999999999655420 0016778899999999999999999999999999987
Q ss_pred HhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHH
Q 005139 504 YEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYD 579 (712)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 579 (712)
.|....+++.+|.+|..+|++++|+.+|++++++.+.. ..++..++.++...++++++..
T Consensus 303 ---------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~-------~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 ---------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED-------KAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp ---------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34457889999999999999999999999999986543 3577788888888888877754
No 182
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.02 E-value=4e-09 Score=89.01 Aligned_cols=112 Identities=16% Similarity=0.248 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 005139 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV 511 (712)
Q Consensus 432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 511 (712)
+..+..+|.++...|++++|+.+|++++.. .|....++..+|.++...|++++|+.++++++.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------- 68 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK------- 68 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-------
Confidence 567888999999999999999999999998 67678899999999999999999999999999983
Q ss_pred CChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Q 005139 512 PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM 567 (712)
Q Consensus 512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~ 567 (712)
|....++..+|.++...|++++|+.++++++.+.+.. ..++..++.+
T Consensus 69 --~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~ 115 (118)
T 1elw_A 69 --PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN-------PQLKEGLQNM 115 (118)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC-------HHHHHHHHHH
T ss_pred --cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-------HHHHHHHHHh
Confidence 3346789999999999999999999999998765433 2355555554
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.99 E-value=1.4e-08 Score=87.59 Aligned_cols=102 Identities=16% Similarity=0.175 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChH
Q 005139 519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAF 598 (712)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 598 (712)
.++.+|.++...|++++|+..|++++...+.. .....+++.+|.++...|++++|+.+|++++... +....
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~ 74 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNG----VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-----PTHDK 74 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSS----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCC----cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-----CCCcc
Confidence 46789999999999999999999999875432 3344688899999999999999999999999862 22233
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139 599 FGVALNQMGLACVQRYSINEAVELFEEARSI 629 (712)
Q Consensus 599 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 629 (712)
...+++.+|.++..+|++++|+.+|++++..
T Consensus 75 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 75 AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999998
No 184
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.97 E-value=7.2e-09 Score=113.43 Aligned_cols=174 Identities=9% Similarity=0.017 Sum_probs=152.4
Q ss_pred HcCC-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHhcCCCCCC
Q 005139 444 SLSR-YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK----------LRESKSYCENALRIYEKPVPGVP 512 (712)
Q Consensus 444 ~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~ 512 (712)
..|+ .++|+..+.+++.+ +|....+|+..+.++...|+ +++++.++++++..
T Consensus 40 ~~~~~~eeal~~~~~~l~~--------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--------- 102 (567)
T 1dce_A 40 QAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------- 102 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---------
Confidence 3444 46789999999999 99999999999999999998 99999999999998
Q ss_pred ChhHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHH
Q 005139 513 PEEIASGLTDVSSIYESMN--ELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG-NYSDSYDSFKNAISKLR 589 (712)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~ 589 (712)
.|....+|...+.++...+ ++++|++++.+++++.+.. ..+|...+.++...| .++++++++.++++.
T Consensus 103 ~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N-------~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~-- 173 (567)
T 1dce_A 103 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN-------FHCWDYRRFVAAQAAVAPAEELAFTDSLITR-- 173 (567)
T ss_dssp CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--
T ss_pred CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcccc-------ccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--
Confidence 4556889999999999999 7799999999999987665 468899999999999 899999999999874
Q ss_pred HhCCCCChHHHHHHHHHHHHHHHh--------------CCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc
Q 005139 590 AIGERKSAFFGVALNQMGLACVQR--------------YSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI 655 (712)
Q Consensus 590 ~~~~~~~~~~~~~~~~lg~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~ 655 (712)
.+....+|...+.++... +.+++|++++.+|+.+ +|+...+|+.++.++...
T Consensus 174 ------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--------~P~~~saW~y~~~ll~~~ 239 (567)
T 1dce_A 174 ------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGRA 239 (567)
T ss_dssp ------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--------CSSCSHHHHHHHHHHSCC
T ss_pred ------CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--------CCCCccHHHHHHHHHhcC
Confidence 223347899999888875 5689999999999999 999999999999999887
Q ss_pred cc
Q 005139 656 GR 657 (712)
Q Consensus 656 g~ 657 (712)
++
T Consensus 240 ~~ 241 (567)
T 1dce_A 240 EP 241 (567)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 185
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=8.8e-09 Score=91.11 Aligned_cols=123 Identities=17% Similarity=0.132 Sum_probs=101.1
Q ss_pred CCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhc
Q 005139 214 GLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIE 293 (712)
Q Consensus 214 ~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~ 293 (712)
...+|..+..++.+|..++..|+ +++|+.+|++++.+. +.++....++..+|.+|...|++++|+.+|++++.
T Consensus 21 ~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~~~------~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 93 (148)
T 2dba_A 21 ATPGASSVEQLRKEGNELFKCGD-YGGALAAYTQALGLD------ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE 93 (148)
T ss_dssp CCTTCCCHHHHHHHHHHHHTTTC-HHHHHHHHHHHHTSC------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHc------ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence 34567888999999999999997 999999999998642 22233478899999999999999999999999998
Q ss_pred hhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 005139 294 IPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAH 360 (712)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 360 (712)
+. +.++ .+++.+|.++...|++++|+.+|++++.+ .|....++..++.+.
T Consensus 94 ~~-----~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 94 KD-----GGDV----KALYRRSQALEKLGRLDQAVLDLQRCVSL--------EPKNKVFQEALRNIS 143 (148)
T ss_dssp HT-----SCCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHH
T ss_pred hC-----ccCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHH
Confidence 75 4443 35899999999999999999999999998 455556666666554
No 186
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.96 E-value=2.3e-08 Score=86.18 Aligned_cols=103 Identities=12% Similarity=0.116 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 005139 394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAV 473 (712)
Q Consensus 394 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 473 (712)
.++.+|.++...|++++|+..|++++.. .+..+....+++.+|.++...|++++|+.+|++++.. .++++..
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~ 75 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----YPTHDKA 75 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTSTTH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----CCCCccc
Confidence 4678999999999999999999988753 3445555688999999999999999999999999998 1223333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139 474 ASVFVRLADMYNRTGKLRESKSYCENALRIY 504 (712)
Q Consensus 474 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 504 (712)
..++..+|.++...|++++|+.+|++++...
T Consensus 76 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 76 AGGLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 8899999999999999999999999999984
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.96 E-value=1.2e-09 Score=112.10 Aligned_cols=132 Identities=14% Similarity=0.147 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHHHHHHcCCHHHHHH
Q 005139 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVA-----------------SVFVRLADMYNRTGKLRESKS 495 (712)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-----------------~~~~~la~~~~~~g~~~~A~~ 495 (712)
..+..+|..++..|+|++|+.+|++++.+ .+... .++.++|.+|..+|++++|+.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--------~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~ 251 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--------MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIG 251 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--------SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--------hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 33445555555556666666666655554 22222 488999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH-HHHcCCH
Q 005139 496 YCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM-YYMLGNY 574 (712)
Q Consensus 496 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~ 574 (712)
+|++++.+ .|....+++++|.+|..+|++++|+.+|++++.+.+.. ..++..++.+ ....+..
T Consensus 252 ~~~~al~~---------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~-------~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 252 HCNIVLTE---------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD-------KAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHHHHHH---------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred HHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHHHHHH
Confidence 99999998 34457889999999999999999999999999887654 2456667776 3445677
Q ss_pred HHHHHHHHHHHHHH
Q 005139 575 SDSYDSFKNAISKL 588 (712)
Q Consensus 575 ~~A~~~~~~al~~~ 588 (712)
+++...|.+++...
T Consensus 316 ~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 316 QKQKEMYKGIFKGK 329 (338)
T ss_dssp --------------
T ss_pred HHHHHHHHHhhCCC
Confidence 88888888887753
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.94 E-value=9.6e-10 Score=112.76 Aligned_cols=142 Identities=15% Similarity=0.122 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC---CC--------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005139 392 AADRRLMGLICETKGDHEAALEHLVLASMTMIAND---QD--------AEVASVDCSIGDTYLSLSRYDEAGFAYQKALT 460 (712)
Q Consensus 392 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 460 (712)
+..+..+|..+...|++++|+.+|.+++....... .. .....+++++|.+|..+|+|++|+.+|++++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34677899999999999999999999986421110 00 00113889999999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHH-HHHcccHHHHHHH
Q 005139 461 AFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSI-YESMNELEQAIKL 539 (712)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~ 539 (712)
+ .|....+++++|.+|..+|++++|+.+|++++++. |....++..++.+ ....+..+++...
T Consensus 259 ~--------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~---------p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 259 E--------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA---------PDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp H--------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred h--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 78888999999999999999999999999999883 3446677888888 4456678888999
Q ss_pred HHHHHHHHHhC
Q 005139 540 LQKALKIYNDA 550 (712)
Q Consensus 540 ~~~al~~~~~~ 550 (712)
|.+++...+..
T Consensus 322 ~~~~l~~~p~~ 332 (338)
T 2if4_A 322 YKGIFKGKDEG 332 (338)
T ss_dssp -----------
T ss_pred HHHhhCCCCCC
Confidence 99998876654
No 189
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=1.1e-08 Score=90.54 Aligned_cols=116 Identities=16% Similarity=0.107 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Q 005139 392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP 471 (712)
Q Consensus 392 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 471 (712)
+..+..+|..+...|++++|+.+|++++.. ..+.+....++..+|.+|...|++++|+.++++++.+ .|
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~ 96 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--------DG 96 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TS
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--------Cc
Confidence 567889999999999999999999999832 1222234789999999999999999999999999998 66
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHH
Q 005139 472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIY 527 (712)
Q Consensus 472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~ 527 (712)
....++..+|.++...|++++|+.+|++++.+. |....++..++.+.
T Consensus 97 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 97 GDVKALYRRSQALEKLGRLDQAVLDLQRCVSLE---------PKNKVFQEALRNIS 143 (148)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---------SSCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------CCcHHHHHHHHHHH
Confidence 668899999999999999999999999999983 22344555555554
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.89 E-value=8.8e-09 Score=112.75 Aligned_cols=177 Identities=11% Similarity=0.019 Sum_probs=153.9
Q ss_pred HcCCH-hHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHHhCCC
Q 005139 277 SLGQY-NEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQ----------LENSLMCYTTGLEVQKQVLGET 345 (712)
Q Consensus 277 ~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~ 345 (712)
..|++ ++|+..+++++.+. |++. .+|+..+.++...|+ +++++.++.+++..
T Consensus 40 ~~~~~~eeal~~~~~~l~~n-----P~~~----taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~-------- 102 (567)
T 1dce_A 40 QAGELDESVLELTSQILGAN-----PDFA----TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-------- 102 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-----TTCH----HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HcCCCCHHHHHHHHHHHHHC-----chhH----HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--------
Confidence 34554 67899999999987 5443 359999999999998 99999999999988
Q ss_pred ChhHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHH
Q 005139 346 DPRVGETCRYLAEAHVQAL--QFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG-DHEAALEHLVLASMTM 422 (712)
Q Consensus 346 ~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g-~~~~A~~~~~~al~~~ 422 (712)
+|....+|...+.++...+ ++++++.++.+++++.++. ..+|...+.+....| .++++++++.+++
T Consensus 103 ~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N--------~~aW~~R~~~l~~l~~~~~~el~~~~~~I--- 171 (567)
T 1dce_A 103 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN--------FHCWDYRRFVAAQAAVAPAEELAFTDSLI--- 171 (567)
T ss_dssp CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHTCCCHHHHHHHHHTTT---
T ss_pred CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcccc--------ccHHHHHHHHHHHcCCChHHHHHHHHHHH---
Confidence 7899999999999999999 7799999999999987665 348999999999999 9999999999887
Q ss_pred HhCCCChhHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Q 005139 423 IANDQDAEVASVDCSIGDTYLSL--------------SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG 488 (712)
Q Consensus 423 ~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 488 (712)
..++....+|++++.++... +.+++|++++.+|+.+ .|....+|+.++.++...+
T Consensus 172 ---~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--------~P~~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 172 ---TRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--------DPNDQSAWFYHRWLLGRAE 240 (567)
T ss_dssp ---TTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--------CSSCSHHHHHHHHHHSCCC
T ss_pred ---HHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--------CCCCccHHHHHHHHHhcCC
Confidence 56777788999999998885 5679999999999998 7888899999999999988
Q ss_pred CHHH
Q 005139 489 KLRE 492 (712)
Q Consensus 489 ~~~~ 492 (712)
++++
T Consensus 241 ~~~~ 244 (567)
T 1dce_A 241 PHDV 244 (567)
T ss_dssp CCSC
T ss_pred Cccc
Confidence 8665
No 191
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.86 E-value=1.9e-09 Score=90.18 Aligned_cols=103 Identities=11% Similarity=0.031 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC
Q 005139 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG 510 (712)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 510 (712)
...++..+|.++...|++++|+.+|++++.+ .|....++..+|.++...|++++|+.+|++++.+...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~---- 72 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED---- 72 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC----
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc----
Confidence 3456778899999999999999999999988 6666788999999999999999999999999987211
Q ss_pred CCChhHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHH
Q 005139 511 VPPEEIASGLTDVSSIYESM-NELEQAIKLLQKALKIYN 548 (712)
Q Consensus 511 ~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~ 548 (712)
.....++..+|.++... |++++|+.++++++...+
T Consensus 73 ---~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 73 ---EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp ---TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred ---cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 01467889999999999 999999999999886543
No 192
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.86 E-value=8e-09 Score=87.60 Aligned_cols=93 Identities=18% Similarity=0.237 Sum_probs=77.9
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHH
Q 005139 444 SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDV 523 (712)
Q Consensus 444 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~l 523 (712)
.+|++++|+.+|++++++ +.+.|....++..+|.+|..+|++++|+.+|++++++ .|....++..+
T Consensus 2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~l 67 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ---------FPNHQALRVFY 67 (117)
T ss_dssp -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCchHHHHHH
Confidence 468999999999999986 1114888999999999999999999999999999999 34457789999
Q ss_pred HHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139 524 SSIYESMNELEQAIKLLQKALKIYNDA 550 (712)
Q Consensus 524 a~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (712)
|.++...|++++|+.++++++...+..
T Consensus 68 ~~~~~~~g~~~~A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 68 AMVLYNLGRYEQGVELLLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999987644
No 193
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.86 E-value=5.1e-09 Score=88.83 Aligned_cols=92 Identities=15% Similarity=0.154 Sum_probs=77.9
Q ss_pred HcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005139 404 TKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADM 483 (712)
Q Consensus 404 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 483 (712)
.+|++++|+.+|++++.. ....|....++..+|.+|..+|++++|+.+|++++++ .|....++..+|.+
T Consensus 2 ~~g~~~~A~~~~~~al~~---~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~ 70 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS---GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYAMV 70 (117)
T ss_dssp -----CCCHHHHHHHHSS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHc---CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHHHH
Confidence 468999999999999831 1115888999999999999999999999999999999 78888999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHhc
Q 005139 484 YNRTGKLRESKSYCENALRIYEK 506 (712)
Q Consensus 484 ~~~~g~~~~A~~~~~~al~~~~~ 506 (712)
+...|++++|+.+|++++.....
T Consensus 71 ~~~~g~~~~A~~~~~~al~~~p~ 93 (117)
T 3k9i_A 71 LYNLGRYEQGVELLLKIIAETSD 93 (117)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHCC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999998543
No 194
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.83 E-value=6.6e-09 Score=91.05 Aligned_cols=90 Identities=16% Similarity=0.230 Sum_probs=80.8
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHhcCCCCCCC
Q 005139 444 SLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL----------RESKSYCENALRIYEKPVPGVPP 513 (712)
Q Consensus 444 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~ 513 (712)
+.+.|++|+..+++++++ .|..+.+|+++|.++...+++ ++|+..|++++++ .
T Consensus 14 r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---------d 76 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---------D 76 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---------C
T ss_pred HHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---------C
Confidence 456789999999999999 899999999999999998875 5999999999999 5
Q ss_pred hhHHHHHHHHHHHHHHcc-----------cHHHHHHHHHHHHHHHHhC
Q 005139 514 EEIASGLTDVSSIYESMN-----------ELEQAIKLLQKALKIYNDA 550 (712)
Q Consensus 514 ~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~ 550 (712)
|....+++++|.+|..+| ++++|+.+|++|+++.++.
T Consensus 77 P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 77 PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 667889999999999885 8999999999999997654
No 195
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.79 E-value=4e-09 Score=88.11 Aligned_cols=100 Identities=19% Similarity=0.156 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 005139 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344 (712)
Q Consensus 265 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 344 (712)
+.++..+|.++...|++++|+.+|++++.+. +..+ .++..+|.++...|++++|+.+|++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------- 69 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-----PEES----KYWLMKGKALYNLERYEEAVDCYNYVINV------- 69 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-----CCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-----cCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh-------
Confidence 4567789999999999999999999999875 3333 35899999999999999999999999987
Q ss_pred CChh--HHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHH
Q 005139 345 TDPR--VGETCRYLAEAHVQA-LQFSEAQKFCQMALDIHK 381 (712)
Q Consensus 345 ~~~~--~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~ 381 (712)
.|. ...++..+|.++... |++++|+.++++++...+
T Consensus 70 -~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 70 -IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp -SCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred -CcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 456 678999999999999 999999999999886543
No 196
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.77 E-value=4.2e-06 Score=89.98 Aligned_cols=362 Identities=9% Similarity=0.002 Sum_probs=210.8
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHH
Q 005139 237 NPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGD 316 (712)
Q Consensus 237 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~ 316 (712)
++..|...|++++..+ |. |+++.+..+|++++... + + ..+|.....
T Consensus 10 ~i~~aR~vyer~l~~~---------P~---------------~~~e~~~~iferal~~~-----p-s----~~LW~~Y~~ 55 (493)
T 2uy1_A 10 ELSSPSAIMEHARRLY---------MS---------------KDYRSLESLFGRCLKKS-----Y-N----LDLWMLYIE 55 (493)
T ss_dssp --CCHHHHHHHHHHHH---------HT---------------TCHHHHHHHHHHHSTTC-----C-C----HHHHHHHHH
T ss_pred chHHHHHHHHHHHHHC---------CC---------------CCHHHHHHHHHHHhccC-----C-C----HHHHHHHHH
Confidence 3778888888888877 22 88999999999999854 2 1 223555555
Q ss_pred HHHHcCC-HHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHHHHHhcCCCCCHHH
Q 005139 317 TYAMLGQ-LENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV----QALQFSEAQKFCQMALDIHKDNGSPASLEE 391 (712)
Q Consensus 317 ~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 391 (712)
.....+. .+.....|+.++... |. ++....+|......+. ..++.+.+..+|++++.+ +.. ...
T Consensus 56 f~~~~~~~~~~i~~~fe~al~~v----g~-d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~----~~~- 124 (493)
T 2uy1_A 56 YVRKVSQKKFKLYEVYEFTLGQF----EN-YWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PMG----SLS- 124 (493)
T ss_dssp HHHHHC----CTHHHHHHHHHHS----TT-CTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCT----THH-
T ss_pred HHHHhCchHHHHHHHHHHHHHHc----CC-CcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hhh----hHH-
Confidence 5445453 345566777777652 32 3444466666555443 356788899999999873 211 111
Q ss_pred HHHHHHHHH-------------HHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCC---------HH
Q 005139 392 AADRRLMGL-------------ICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSR---------YD 449 (712)
Q Consensus 392 a~~~~~la~-------------~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~---------~~ 449 (712)
..|..... +-.....+..|...|..+....... .. ..+..... +..++ ..
T Consensus 125 -~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~--s~---~~W~~y~~--~E~~~~~~~~~~~~~~ 196 (493)
T 2uy1_A 125 -ELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW--SV---KNAARLID--LEMENGMKLGGRPHES 196 (493)
T ss_dssp -HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--SH---HHHHHHHH--HHHTCTTCCCHHHHHH
T ss_pred -HHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc--cH---HHHHHHHH--HHhcCCccCcchhhHH
Confidence 11111111 1112234445555555554433221 11 12322222 22222 34
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHH
Q 005139 450 EAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES 529 (712)
Q Consensus 450 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~ 529 (712)
.....|++++.. .|....+|...+..+...|+.+.|...|++|+.. ... . ..+...+... .
T Consensus 197 Rv~~~ye~al~~--------~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~-----~----~l~~~y~~~~-e 257 (493)
T 2uy1_A 197 RMHFIHNYILDS--------FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDG-----M----FLSLYYGLVM-D 257 (493)
T ss_dssp HHHHHHHHHHHH--------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCS-----S----HHHHHHHHHT-T
T ss_pred HHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCc-----H----HHHHHHHhhc-c
Confidence 567788998887 5666889999999999999999999999999998 432 1 1222222221 1
Q ss_pred cccHHHHHHHHHHHHHHH---HhCCC---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHH
Q 005139 530 MNELEQAIKLLQKALKIY---NDAPG---QQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVAL 603 (712)
Q Consensus 530 ~g~~~~A~~~~~~al~~~---~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 603 (712)
.+ +. +++..... ....+ .......+|...+..+.+.++.+.|...|++| . ... .. ..++
T Consensus 258 ~~---~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~----~~~-~~---~~v~ 322 (493)
T 2uy1_A 258 EE---AV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G----NEG-VG---PHVF 322 (493)
T ss_dssp CT---HH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T----TSC-CC---HHHH
T ss_pred hh---HH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h----CCC-CC---hHHH
Confidence 11 11 22222111 10000 01122356777788887888999999999998 2 111 11 2455
Q ss_pred HHHHHHHHHhC-CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhCCCChhHHHHHHHH
Q 005139 604 NQMGLACVQRY-SINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLGTANPDVDDEKRRL 675 (712)
Q Consensus 604 ~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~~~~p~~~~~~~~l 675 (712)
...|.+....+ +++.|...|+.+++. .|+....+...+......|+ .+.+ +.....+...
T Consensus 323 i~~A~lE~~~~~d~~~ar~ife~al~~--------~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~ 390 (493)
T 2uy1_A 323 IYCAFIEYYATGSRATPYNIFSSGLLK--------HPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSM 390 (493)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHH
Confidence 55666666555 699999999999986 34444445556666666776 2222 2235567777
Q ss_pred HHHHHHhccHHHHHHHHHHHHHH
Q 005139 676 AELLKEAGRVRSRKAQSLETLLD 698 (712)
Q Consensus 676 a~~~~~~g~~~~A~~~~l~~~l~ 698 (712)
...-...|+.+.+. ..+++.+.
T Consensus 391 ~~fE~~~G~~~~~r-~v~~~~~~ 412 (493)
T 2uy1_A 391 IEYEFMVGSMELFR-ELVDQKMD 412 (493)
T ss_dssp HHHHHHHSCHHHHH-HHHHHHHH
T ss_pred HHHHHHCCCHHHHH-HHHHHHHH
Confidence 77777889999888 88888875
No 197
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.73 E-value=3.6e-08 Score=86.36 Aligned_cols=99 Identities=17% Similarity=0.163 Sum_probs=82.0
Q ss_pred HHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHhCCCCCh
Q 005139 528 ESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNY----------SDSYDSFKNAISKLRAIGERKSA 597 (712)
Q Consensus 528 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~ 597 (712)
.+.+.+++|++.+++++++.+.. +.+++++|.++...+++ ++|+..|++|+++ .+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~-------aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--------dP 77 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLD-------ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--------DP 77 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CT
T ss_pred HHHhHHHHHHHHHHHHHHHCCCC-------HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--------Cc
Confidence 35678999999999999997765 57899999999998875 5999999999987 23
Q ss_pred HHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 005139 598 FFGVALNQMGLACVQRY-----------SINEAVELFEEARSILEQECGPYHPDTLGVYSNLA 649 (712)
Q Consensus 598 ~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La 649 (712)
....+++++|.+|..+| ++++|+.+|++|+++ +|+.......+.
T Consensus 78 ~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--------~P~~~~y~~al~ 132 (158)
T 1zu2_A 78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--------QPDNTHYLKSLE 132 (158)
T ss_dssp TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--------CCCCHHHHHHHH
Confidence 45689999999999875 899999999999999 887765554443
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.68 E-value=1.7e-07 Score=74.80 Aligned_cols=87 Identities=25% Similarity=0.383 Sum_probs=72.3
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 005139 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507 (712)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (712)
++....++..+|.++...|++++|+.+|++++.+ .|....++..+|.++...|++++|+.+|++++.+
T Consensus 5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---- 72 (91)
T 1na3_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---- 72 (91)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----
Confidence 3456778889999999999999999999999987 6666788999999999999999999999999988
Q ss_pred CCCCCChhHHHHHHHHHHHHHHcc
Q 005139 508 VPGVPPEEIASGLTDVSSIYESMN 531 (712)
Q Consensus 508 ~~~~~~~~~~~~~~~la~~~~~~g 531 (712)
.|....++..+|.++...|
T Consensus 73 -----~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 73 -----DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp -----CTTCHHHHHHHHHHHHHHC
T ss_pred -----CCCCHHHHHHHHHHHHhcC
Confidence 3344677888888887654
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.65 E-value=2.5e-07 Score=77.90 Aligned_cols=87 Identities=20% Similarity=0.262 Sum_probs=76.6
Q ss_pred hHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 005139 282 NEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHV 361 (712)
Q Consensus 282 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 361 (712)
++|+..|++++... +.++. +++.+|.+|...|++++|+.+|++++.+ +|....++..+|.++.
T Consensus 2 ~~a~~~~~~al~~~-----p~~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~ 64 (115)
T 2kat_A 2 QAITERLEAMLAQG-----TDNML----LRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQ 64 (115)
T ss_dssp CCHHHHHHHHHTTT-----CCCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-----CCcHH----HHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHH
Confidence 46888999999876 44443 5899999999999999999999999998 6777889999999999
Q ss_pred HhCCHHHHHHHHHHHHHHHHhcCC
Q 005139 362 QALQFSEAQKFCQMALDIHKDNGS 385 (712)
Q Consensus 362 ~~g~~~~A~~~~~~al~~~~~~~~ 385 (712)
..|++++|+.+|++++.+.+....
T Consensus 65 ~~g~~~~A~~~~~~al~~~~~~~~ 88 (115)
T 2kat_A 65 GQGDRAGARQAWESGLAAAQSRGD 88 (115)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HcCCHHHHHHHHHHHHHhcccccc
Confidence 999999999999999999877653
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.65 E-value=2.6e-07 Score=73.70 Aligned_cols=85 Identities=21% Similarity=0.340 Sum_probs=74.7
Q ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Q 005139 556 TVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECG 635 (712)
Q Consensus 556 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 635 (712)
....++..+|.++...|++++|+.+|++++.+. +....++..+|.++...|++++|+.+|++++.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------ 72 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------ 72 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------
Confidence 345688899999999999999999999999862 223478999999999999999999999999998
Q ss_pred CCChhhHHHHHHHHHHHHHcc
Q 005139 636 PYHPDTLGVYSNLAGTYDAIG 656 (712)
Q Consensus 636 ~~~p~~~~~~~~La~~~~~~g 656 (712)
+|....++.++|.++..+|
T Consensus 73 --~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 73 --DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp --CTTCHHHHHHHHHHHHHHC
T ss_pred --CCCCHHHHHHHHHHHHhcC
Confidence 8888999999999998765
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.64 E-value=1.4e-08 Score=84.74 Aligned_cols=99 Identities=13% Similarity=0.159 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCC
Q 005139 432 ASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGV 511 (712)
Q Consensus 432 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 511 (712)
+..+..+|.++...|++++|+.+|++++.+ .|....++.++|.++...|++++|+.+|++++.+.... .
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~ 72 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA---E 72 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST---T
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---c
Confidence 567889999999999999999999999998 77778999999999999999999999999999874331 1
Q ss_pred CChhHHHHHHHHHHHHHHcccHHHHHHHHH
Q 005139 512 PPEEIASGLTDVSSIYESMNELEQAIKLLQ 541 (712)
Q Consensus 512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 541 (712)
.......++..+|.++...|+++.|+..++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 73 HVAIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 122237788899999999988777765544
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.58 E-value=2.6e-07 Score=77.71 Aligned_cols=84 Identities=8% Similarity=0.028 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHH
Q 005139 450 EAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES 529 (712)
Q Consensus 450 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~ 529 (712)
+|+..|++++.. .|....++..+|.+|...|++++|+.+|++++.+ .|....++..+|.+|..
T Consensus 3 ~a~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~ 65 (115)
T 2kat_A 3 AITERLEAMLAQ--------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF---------DPTYSVAWKWLGKTLQG 65 (115)
T ss_dssp CHHHHHHHHHTT--------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH---------CCCcHHHHHHHHHHHHH
Confidence 577888888886 6777889999999999999999999999999998 34457789999999999
Q ss_pred cccHHHHHHHHHHHHHHHHhC
Q 005139 530 MNELEQAIKLLQKALKIYNDA 550 (712)
Q Consensus 530 ~g~~~~A~~~~~~al~~~~~~ 550 (712)
.|++++|+.+|++++.+.+..
T Consensus 66 ~g~~~~A~~~~~~al~~~~~~ 86 (115)
T 2kat_A 66 QGDRAGARQAWESGLAAAQSR 86 (115)
T ss_dssp HTCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhcccc
Confidence 999999999999999998764
No 203
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.54 E-value=2.3e-05 Score=84.24 Aligned_cols=324 Identities=10% Similarity=-0.040 Sum_probs=160.2
Q ss_pred ccccccCccccccCCCCCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH----
Q 005139 201 KGKLHKGQDVSEAGLDKPGLGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYC---- 276 (712)
Q Consensus 201 ~~~~~a~~~~~~~~~~~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~---- 276 (712)
+++..+.+.|.......| ...++..........++..+.....|+.|+... +...... ..+......+.
T Consensus 28 ~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~v---g~d~~s~---~iW~~Yi~f~~~~~~ 100 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQF---ENYWDSY---GLYKEYIEEEGKIED 100 (493)
T ss_dssp TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHS---TTCTTCH---HHHHHHHHHTSSCSS
T ss_pred CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHc---CCCcccH---HHHHHHHHHHHhchh
Confidence 555555556666666667 555666666666666543566677888888754 1111222 33333333222
Q ss_pred HcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHH-------------------------------------------
Q 005139 277 SLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQ------------------------------------------- 313 (712)
Q Consensus 277 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~------------------------------------------- 313 (712)
..++.+.+..+|++++.+... ........|..
T Consensus 101 ~~~~~~~vR~iy~rAL~~P~~-----~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W 175 (493)
T 2uy1_A 101 EQTRIEKIRNGYMRALQTPMG-----SLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNA 175 (493)
T ss_dssp HHHHHHHHHHHHHHHHTSCCT-----THHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHH
T ss_pred hhHHHHHHHHHHHHHHhChhh-----hHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHH
Confidence 346788899999999875211 00000000000
Q ss_pred HHHHHHHcCC---------HHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Q 005139 314 LGDTYAMLGQ---------LENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNG 384 (712)
Q Consensus 314 lg~~~~~~g~---------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 384 (712)
...+-+..++ .......|++++.. .|....+|...+..+...|+.+.|...|++|+.. +...
T Consensus 176 ~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~--------~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~ 246 (493)
T 2uy1_A 176 ARLIDLEMENGMKLGGRPHESRMHFIHNYILDS--------FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM 246 (493)
T ss_dssp HHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS
T ss_pred HHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH
Confidence 0000011111 12233445554443 2344556666666667777777777777777766 3321
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC-------CChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005139 385 SPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND-------QDAEVASVDCSIGDTYLSLSRYDEAGFAYQK 457 (712)
Q Consensus 385 ~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 457 (712)
. .+...+.. .+.++. +........... .......++...+......++.+.|...|.+
T Consensus 247 ----~----l~~~y~~~----~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~ 311 (493)
T 2uy1_A 247 ----F----LSLYYGLV----MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIE 311 (493)
T ss_dssp ----H----HHHHHHHH----TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred ----H----HHHHHHhh----cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 11111111 011111 111111100000 1112234455555555566667777777777
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHH
Q 005139 458 ALTAFKTNKGENHPAVASVFVRLADMYNRTG-KLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQA 536 (712)
Q Consensus 458 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 536 (712)
| .. .+....++...|.+-...+ +.+.|..+|+.+++.+.. .+ ..+...+......|+.+.|
T Consensus 312 A-~~--------~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~------~~---~~~~~yid~e~~~~~~~~a 373 (493)
T 2uy1_A 312 L-GN--------EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD------ST---LLKEEFFLFLLRIGDEENA 373 (493)
T ss_dssp H-TT--------SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT------CH---HHHHHHHHHHHHHTCHHHH
T ss_pred h-hC--------CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC------CH---HHHHHHHHHHHHcCCHHHH
Confidence 6 21 1112334555555555444 577777777777776322 22 2234455566667777777
Q ss_pred HHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139 537 IKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR 589 (712)
Q Consensus 537 ~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 589 (712)
..+|+++.. ...++......-...|+.+.+...+++++..++
T Consensus 374 R~l~er~~k-----------~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 374 RALFKRLEK-----------TSRMWDSMIEYEFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp HHHHHHSCC-----------BHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 777777510 123444555555566777777777777776554
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.52 E-value=4.3e-07 Score=75.56 Aligned_cols=84 Identities=12% Similarity=0.172 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCC
Q 005139 558 AGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPY 637 (712)
Q Consensus 558 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 637 (712)
+..+..+|.++...|++++|+.+|++++.+. +....++..+|.++..+|++++|+.+|++++.+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------- 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--------PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY-------- 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------
Confidence 4578899999999999999999999999861 223578999999999999999999999999988
Q ss_pred Chhh------HHHHHHHHHHHHHccc
Q 005139 638 HPDT------LGVYSNLAGTYDAIGR 657 (712)
Q Consensus 638 ~p~~------~~~~~~La~~~~~~g~ 657 (712)
+|+. ..++..++.++..+|+
T Consensus 68 ~p~~~~~~~~~~~~~~~~~~~~~~~~ 93 (111)
T 2l6j_A 68 TSTAEHVAIRSKLQYRLELAQGAVGS 93 (111)
T ss_dssp CSSTTSHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHh
Confidence 6766 7778888888887776
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.50 E-value=7e-07 Score=77.93 Aligned_cols=110 Identities=16% Similarity=0.145 Sum_probs=92.8
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Q 005139 488 GKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVM 567 (712)
Q Consensus 488 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~ 567 (712)
+++++|+.+|+++.+. + ++. +. ||.+|...+..++|+.+|+++.+. +. ..+++.||.+
T Consensus 9 ~d~~~A~~~~~~aa~~------g--~~~---a~--lg~~y~~g~~~~~A~~~~~~Aa~~-----g~----~~a~~~Lg~~ 66 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL------N--EMF---GC--LSLVSNSQINKQKLFQYLSKACEL-----NS----GNGCRFLGDF 66 (138)
T ss_dssp HHHHHHHHHHHHHHHT------T--CTT---HH--HHHHTCTTSCHHHHHHHHHHHHHT-----TC----HHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcC------C--CHh---hh--HHHHHHcCCCHHHHHHHHHHHHcC-----CC----HHHHHHHHHH
Confidence 4688999999999876 2 111 22 999999999999999999999875 21 4688999999
Q ss_pred HHH----cCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Q 005139 568 YYM----LGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQ----RYSINEAVELFEEARSI 629 (712)
Q Consensus 568 ~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~ 629 (712)
|.. .+++++|+.+|++|.+. . ...+++.||.+|.. .+++++|+.+|++|.+.
T Consensus 67 y~~G~g~~~d~~~A~~~~~~Aa~~-------g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 67 YENGKYVKKDLRKAAQYYSKACGL-------N---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHcCCCCCccHHHHHHHHHHHHcC-------C---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 999 89999999999999873 1 24789999999999 89999999999999886
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.44 E-value=1.4e-06 Score=71.20 Aligned_cols=69 Identities=13% Similarity=0.138 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Q 005139 309 AGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGS 385 (712)
Q Consensus 309 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 385 (712)
.+++.+|.+|...|++++|+.+|++++++ +|....++..+|.+|...|++++|+..|++++.+.+....
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence 35999999999999999999999999998 6777889999999999999999999999999999877654
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.44 E-value=7.8e-07 Score=72.67 Aligned_cols=72 Identities=11% Similarity=0.198 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005139 470 HPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (712)
Q Consensus 470 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (712)
.|....+++.+|.+|...|++++|+.+|++++++ .|....++..+|.+|...|++++|+..|++++.+.+.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVET---------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 4666789999999999999999999999999999 3445668999999999999999999999999999776
Q ss_pred C
Q 005139 550 A 550 (712)
Q Consensus 550 ~ 550 (712)
.
T Consensus 74 ~ 74 (100)
T 3ma5_A 74 E 74 (100)
T ss_dssp H
T ss_pred C
Confidence 5
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.42 E-value=1.8e-06 Score=75.32 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHH
Q 005139 237 NPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGD 316 (712)
Q Consensus 237 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~ 316 (712)
++++|+.+|+++.+. +.+. +. ||.+|...+.+++|+.+|+++.+.. ...+++.||.
T Consensus 10 d~~~A~~~~~~aa~~------g~~~-----a~--lg~~y~~g~~~~~A~~~~~~Aa~~g-----------~~~a~~~Lg~ 65 (138)
T 1klx_A 10 DLKKAIQYYVKACEL------NEMF-----GC--LSLVSNSQINKQKLFQYLSKACELN-----------SGNGCRFLGD 65 (138)
T ss_dssp HHHHHHHHHHHHHHT------TCTT-----HH--HHHHTCTTSCHHHHHHHHHHHHHTT-----------CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcC------CCHh-----hh--HHHHHHcCCCHHHHHHHHHHHHcCC-----------CHHHHHHHHH
Confidence 388999999999864 2221 22 8999999999999999999998752 2345899999
Q ss_pred HHHH----cCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Q 005139 317 TYAM----LGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQ----ALQFSEAQKFCQMALDI 379 (712)
Q Consensus 317 ~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 379 (712)
+|.. .+++++|+.+|+++.+. ....++++||.+|.. .+++++|+.+|+++.+.
T Consensus 66 ~y~~G~g~~~d~~~A~~~~~~Aa~~----------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 66 FYENGKYVKKDLRKAAQYYSKACGL----------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHCSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHcCCCCCccHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 9999 89999999999999875 345789999999999 89999999999999875
No 209
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=98.37 E-value=0.0003 Score=71.83 Aligned_cols=212 Identities=13% Similarity=0.099 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcCCCCC
Q 005139 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR-TGKLRESKSYCENALRIYEKPVPGV 511 (712)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~ 511 (712)
.+...+|.+|...|++++-..++......+.... ....+.....+-..+.. -+..+.-++++.++++.....
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~---- 92 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSIS---KAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE---- 92 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSC---HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc---hHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH----
Confidence 3456778888888888887777776655433321 23334444444444433 345566677777777776541
Q ss_pred CChhHHH--HHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139 512 PPEEIAS--GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR 589 (712)
Q Consensus 512 ~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 589 (712)
...... .-..||.+|+..|+|.+|.+.+.+.+..+... ++...+..++.....+|...+++.++..++.+|.....
T Consensus 93 -~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~-dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ 170 (394)
T 3txn_A 93 -KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL-DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTAN 170 (394)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS-SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc
Confidence 111222 34589999999999999999999999988775 45567778888999999999999999999999998876
Q ss_pred HhCCCCChHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005139 590 AIGERKSAFFGVALNQMGLACV-QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657 (712)
Q Consensus 590 ~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~ 657 (712)
.+. .++...+.....-|.++. ..++|.+|..+|-++..-+... ..|....++..++.+-...++
T Consensus 171 ai~-~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~---~~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 171 AIY-CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSV---DSVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp HSC-CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHHHHTTC
T ss_pred cCC-CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccccc---ccHHHHHHHHHHHHHHHHcCC
Confidence 653 345566777788889999 8999999999999987655422 245444555555555544444
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.37 E-value=1.2e-06 Score=71.24 Aligned_cols=90 Identities=9% Similarity=0.138 Sum_probs=74.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCCh
Q 005139 436 CSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVAS-VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE 514 (712)
Q Consensus 436 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 514 (712)
+.+|.++...|++++|+..|++++.. .|.... ++..+|.+|...|++++|+.+|++++.+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-------- 67 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD-------- 67 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--------
Confidence 46788999999999999999999998 777777 9999999999999999999999999998322
Q ss_pred hHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139 515 EIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (712)
Q Consensus 515 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (712)
...++.. +.+.+|+..|+++....+..
T Consensus 68 -~~~~~~~--------~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 68 -SPALQAR--------KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp -STHHHHH--------HHHHHHHHHHCCTTHHHHCC
T ss_pred -cHHHHHH--------HHHHHHHHHHHHHhccCccc
Confidence 2233322 67788888888888877654
No 211
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=98.29 E-value=0.00022 Score=72.83 Aligned_cols=211 Identities=15% Similarity=0.103 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCCHH
Q 005139 394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLS-LSRYDEAGFAYQKALTAFKTNKGENHPA 472 (712)
Q Consensus 394 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~ 472 (712)
+...||.+|...|++++-.+++......+.... ....+.....+-..+.. -+..+.-++.+.++++.++.. ...
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~----~r~ 95 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSIS-KAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE----KRT 95 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSC-HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT----TCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH----HHH
Confidence 577899999999999999998876543322211 12233334444444433 355666777888888876643 233
Q ss_pred HHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139 473 VAS--VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (712)
Q Consensus 473 ~~~--~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (712)
... .-..||.+|+..|+|.+|...+.+.++-+.+. ++......++.....+|...+++.++...+.+|.......
T Consensus 96 flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~---dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai 172 (394)
T 3txn_A 96 FLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL---DDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAI 172 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS---SCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccC
Confidence 333 44589999999999999999999999988773 3456778889999999999999999999999999988776
Q ss_pred CCCCCcHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCC
Q 005139 551 PGQQSTVAGIEAQMGVMYY-MLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYS 615 (712)
Q Consensus 551 ~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 615 (712)
+.++...+.+...-|.++. ..++|..|..+|-++..-+...+ .+....++..++.+-...++
T Consensus 173 ~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~---~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 173 YCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVD---SVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccc---cHHHHHHHHHHHHHHHHcCC
Confidence 4444466777778888999 89999999999999876554332 23333444555555555555
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.23 E-value=2.7e-06 Score=69.04 Aligned_cols=92 Identities=14% Similarity=0.199 Sum_probs=71.8
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChh
Q 005139 269 HVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPR 348 (712)
Q Consensus 269 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 348 (712)
+.+|.++...|++++|+..|+++++.. +.++. .+++.+|.+|...|++++|+.+|++++.+ +|.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~-----p~~~~---~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~ 67 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTE-----PVGKD---EAYYLMGNAYRKLGDWQKALNNYQSAIEL--------NPD 67 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-----SSTHH---HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCcHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCC
Confidence 457889999999999999999999875 44432 15899999999999999999999999988 455
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Q 005139 349 VGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNG 384 (712)
Q Consensus 349 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 384 (712)
...++.. +.+.+++..|++++...+...
T Consensus 68 ~~~~~~~--------~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 68 SPALQAR--------KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp STHHHHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred cHHHHHH--------HHHHHHHHHHHHHhccCcccc
Confidence 5444432 567778888888777766543
No 213
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.18 E-value=2.1e-05 Score=64.50 Aligned_cols=83 Identities=16% Similarity=0.120 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 005139 559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH 638 (712)
Q Consensus 559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 638 (712)
.-++.+|..++..|+|..|+.+|++|+......... ......++..||.++.++|++++|+.++++++.+ .
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~-~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--------~ 76 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEIS-TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------D 76 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC-SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------C
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCC-cccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------C
Confidence 456789999999999999999999999986543211 2335688999999999999999999999999998 8
Q ss_pred hhhHHHHHHHHH
Q 005139 639 PDTLGVYSNLAG 650 (712)
Q Consensus 639 p~~~~~~~~La~ 650 (712)
|+...++.+++.
T Consensus 77 P~~~~~~~n~~~ 88 (104)
T 2v5f_A 77 PEHQRANGNLKY 88 (104)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCCHHHHhhHHH
Confidence 888888888873
No 214
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.08 E-value=3.9e-05 Score=62.88 Aligned_cols=81 Identities=16% Similarity=0.043 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Q 005139 393 ADRRLMGLICETKGDHEAALEHLVLASMTMIAND-QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHP 471 (712)
Q Consensus 393 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 471 (712)
...+.+|..++..|+|..|+.+|++|+....... .......++..+|.+++.+|+++.|+.++++++.+ .|
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--------~P 77 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------DP 77 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CT
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CC
Confidence 3567899999999999999999999998775433 23467788999999999999999999999999998 67
Q ss_pred HHHHHHHHHH
Q 005139 472 AVASVFVRLA 481 (712)
Q Consensus 472 ~~~~~~~~la 481 (712)
....++.+++
T Consensus 78 ~~~~~~~n~~ 87 (104)
T 2v5f_A 78 EHQRANGNLK 87 (104)
T ss_dssp TCHHHHHHHH
T ss_pred CCHHHHhhHH
Confidence 6666666665
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.08 E-value=9.9e-05 Score=74.04 Aligned_cols=127 Identities=12% Similarity=0.106 Sum_probs=92.6
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccH----HHHHHHHHHHHHHHHhCCCCCCcHHHHHHHH
Q 005139 489 KLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL----EQAIKLLQKALKIYNDAPGQQSTVAGIEAQM 564 (712)
Q Consensus 489 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 564 (712)
.+.+|+.+|++|+++ .|..+.++..++.+|.....+ ......+..++...... ...+..+.++..+
T Consensus 214 ~~~~A~~l~e~Al~l---------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~-~~~~~~a~~~~al 283 (372)
T 3ly7_A 214 SLNRASELLGEIVQS---------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL-PELNNLSIIYQIK 283 (372)
T ss_dssp HHHHHHHHHHHHHHH---------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC-GGGTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc-ccCCcCHHHHHHH
Confidence 358899999999999 666677777777777532211 12223334444432222 2233445678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 005139 565 GVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTL 642 (712)
Q Consensus 565 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~ 642 (712)
+.++...|++++|+..+++|+.+- +. ..++..+|.++...|++++|++.|++|+.+ +|...
T Consensus 284 al~~l~~gd~d~A~~~l~rAl~Ln-------~s--~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--------~P~~~ 344 (372)
T 3ly7_A 284 AVSALVKGKTDESYQAINTGIDLE-------MS--WLNYVLLGKVYEMKGMNREAADAYLTAFNL--------RPGAN 344 (372)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-------CC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------SCSHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcC-------CC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCcC
Confidence 888888999999999999999971 11 367789999999999999999999999999 77664
No 216
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.06 E-value=0.00025 Score=76.08 Aligned_cols=168 Identities=11% Similarity=0.053 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHH
Q 005139 434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGK---------LRESKSYCENALRIY 504 (712)
Q Consensus 434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~ 504 (712)
.+..+-..+.+.|++++|+.+|+++... |- .| ...+|..|-.++...+. +++|..+|++....
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~-----Gv-~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~- 99 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRN-----GV-QL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD- 99 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHH-----TC-CC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CC-CC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh-
Confidence 3455567888999999999999988764 11 23 24566666666655443 67888888887654
Q ss_pred hcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005139 505 EKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNA 584 (712)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 584 (712)
+- .|+ ..+|..+...|.+.|++++|..+|++.... |..+.. .+|..+...|.+.|+.++|..+|++.
T Consensus 100 -----G~-~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-----g~~Pd~-~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 100 -----KV-VPN-EATFTNGARLAVAKDDPEMAFDMVKQMKAF-----GIQPRL-RSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp -----TC-CCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----TCCCCH-HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCcc-ceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 21 222 567889999999999999999999987653 333333 47888889999999999999999988
Q ss_pred HHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139 585 ISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (712)
Q Consensus 585 l~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 629 (712)
.+. +-. +. ..+|..|-.+|.+.|+.++|.++|++..+.
T Consensus 167 ~~~----G~~-Pd--~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 167 VES----EVV-PE--EPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHT----TCC-CC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Hhc----CCC-CC--HHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 652 222 22 368889999999999999999999997664
No 217
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.98 E-value=0.00022 Score=76.64 Aligned_cols=168 Identities=8% Similarity=-0.016 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHH
Q 005139 352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKG---------DHEAALEHLVLASMTM 422 (712)
Q Consensus 352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~ 422 (712)
.+..+-..+.+.|++++|+.+|+++.... ..++ ..+|+.+-.++...+ .+++|.+.|.+...
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~G---v~pd----~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~-- 98 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNG---VQLS----QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV-- 98 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHT---CCCC----HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCCC----HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH--
Confidence 34555677889999999999999987542 2222 225666665665443 36788888876542
Q ss_pred HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005139 423 IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALR 502 (712)
Q Consensus 423 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 502 (712)
.+..|+ ..+|..+...|...|++++|..+|++.... | ......+|..+-..|.+.|++++|..+|++..+
T Consensus 99 --~G~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-----g--~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 99 --DKVVPN-EATFTNGARLAVAKDDPEMAFDMVKQMKAF-----G--IQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp --TTCCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----T--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --hCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C--CCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 344444 357888899999999999999999987653 1 222356788999999999999999999999876
Q ss_pred HHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 005139 503 IYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI 546 (712)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 546 (712)
. +- .| ...+|..|-..|.+.|+.++|..++++..+.
T Consensus 169 ~------G~-~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 169 S------EV-VP-EEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp T------TC-CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred c------CC-CC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 5 21 22 2467889999999999999999999987654
No 218
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.98 E-value=0.0012 Score=63.48 Aligned_cols=106 Identities=15% Similarity=0.157 Sum_probs=84.0
Q ss_pred ChhHHHHHHHHHHHHHH-----cCC------HHHHHHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHHHc-----CC
Q 005139 428 DAEVASVDCSIGDTYLS-----LSR------YDEAGFAYQKALTAFKTNKGENHPA--VASVFVRLADMYNRT-----GK 489 (712)
Q Consensus 428 ~~~~~~~~~~la~~~~~-----~g~------~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~-----g~ 489 (712)
.+..+..++..|.++.. .|+ ...|...+++++++ +|. ...++..||.+|... |+
T Consensus 148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--------DP~~~~GsA~~~LG~lY~~vPp~~gGd 219 (301)
T 3u64_A 148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--------WPSYQEGAVWNVLTKFYAAAPESFGGG 219 (301)
T ss_dssp CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHSCTTTTCC
T ss_pred CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHhCCCccCCC
Confidence 45555666666655533 233 46888889999998 776 567999999999995 99
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCChh-HHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHhC
Q 005139 490 LRESKSYCENALRIYEKPVPGVPPEE-IASGLTDVSSIYES-MNELEQAIKLLQKALKIYNDA 550 (712)
Q Consensus 490 ~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~ 550 (712)
.++|..+|++|+++. |. ....++..|..++. .|++++|..++++++...+..
T Consensus 220 ~ekA~~~ferAL~Ln---------P~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 220 MEKAHTAFEHLTRYC---------SAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHHHHC---------CTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHHHHhC---------CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 999999999999993 32 26678899999988 499999999999999976653
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.98 E-value=0.0001 Score=73.97 Aligned_cols=134 Identities=8% Similarity=-0.001 Sum_probs=96.6
Q ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc---C-CHHHHHHHHHHHHHHHhcC
Q 005139 435 DCSIGDTYLSLS---RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRT---G-KLRESKSYCENALRIYEKP 507 (712)
Q Consensus 435 ~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---g-~~~~A~~~~~~al~~~~~~ 507 (712)
++..|..+...+ .+.+|+.+|++|+++ .|..+.++..++.+|... + .......-+..++......
T Consensus 199 l~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--------DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 199 NFYQAHDYLLHGDDKSLNRASELLGEIVQS--------SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 334455555444 358999999999999 898888888888877532 1 1122223333444432221
Q ss_pred CCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139 508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587 (712)
Q Consensus 508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 587 (712)
...+..+.++..++..+...|++++|+..+++|+.+.+ . +..+..+|.++...|++++|++.|.+|+.+
T Consensus 271 ---~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-------s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 271 ---PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-------S-WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp ---GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-------C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-------C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 11344577888899889889999999999999999842 1 346788999999999999999999999997
No 220
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.78 E-value=0.0077 Score=63.32 Aligned_cols=218 Identities=12% Similarity=0.046 Sum_probs=140.0
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 005139 406 GDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN 485 (712)
Q Consensus 406 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 485 (712)
|+++.|++.+....+..+...+......++..+..+++..++|+...+++.-... ..+. .............-|.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk----kr~q-lk~ai~~~V~~~~~~l 104 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK----KHGQ-LKLSIQYMIQKVMEYL 104 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT----TTTT-SHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH----Hhhh-hHHHHHHHHHHHHHHH
Confidence 5678888777554444555666666778888899999999999887776543221 1111 1222222222222222
Q ss_pred -HcCCHHHHHHHHHHHHHHHhcCCCCCC--ChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHH
Q 005139 486 -RTGKLRESKSYCENALRIYEKPVPGVP--PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEA 562 (712)
Q Consensus 486 -~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 562 (712)
.....+. ......+........+.. ....+.....|+.+|...|++.+|...+.....-.... .+......++.
T Consensus 105 ~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~-~~~~~kve~~l 181 (445)
T 4b4t_P 105 KSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS-MEMSEKIQFIL 181 (445)
T ss_dssp HHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS-SCHHHHHHHHH
T ss_pred hcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc-ccHHHHHHHHH
Confidence 2222221 122233333222211211 12356777899999999999999999998876433221 22235567788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 005139 563 QMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (712)
Q Consensus 563 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 632 (712)
....+|...+++.+|..++.++........ ..+......+..+|.++...++|.+|..+|.++......
T Consensus 182 ~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~-~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~ 250 (445)
T 4b4t_P 182 EQMELSILKGDYSQATVLSRKILKKTFKNP-KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI 250 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhhcccC-CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence 889999999999999999999865444332 223445677888999999999999999999999886544
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.75 E-value=0.0012 Score=63.31 Aligned_cols=83 Identities=11% Similarity=-0.003 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCChh--HHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 005139 324 LENSLMCYTTGLEVQKQVLGETDPR--VGETCRYLAEAHVQA-----LQFSEAQKFCQMALDIHKDNGSPASLEEAADRR 396 (712)
Q Consensus 324 ~~~A~~~~~~al~~~~~~~~~~~~~--~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~ 396 (712)
...|...+++++++ +|. ...+|..+|.+|... |+.++|..+|++++++.+... ...++
T Consensus 179 l~~A~a~lerAleL--------DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~-------id~~v 243 (301)
T 3u64_A 179 VHAAVMMLERACDL--------WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHD-------PDHHI 243 (301)
T ss_dssp HHHHHHHHHHHHHH--------CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTC-------SHHHH
T ss_pred HHHHHHHHHHHHHh--------CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCC-------chHHH
Confidence 47888899999999 677 567999999999995 999999999999999987542 12678
Q ss_pred HHHHHHHH-cCCHHHHHHHHHHHHHH
Q 005139 397 LMGLICET-KGDHEAALEHLVLASMT 421 (712)
Q Consensus 397 ~la~~~~~-~g~~~~A~~~~~~al~~ 421 (712)
..|..+.. .|++++|..++++++..
T Consensus 244 ~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 244 TYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 88998887 59999999999999853
No 222
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.71 E-value=0.0004 Score=60.29 Aligned_cols=111 Identities=14% Similarity=-0.008 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 005139 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344 (712)
Q Consensus 265 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 344 (712)
.+++..-...++..|.|+.|+.....++.+.......-.+...+.++..+|..++..++|..|...|++++...+.+...
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 44566677888899999999999999888864433333466677889999999999999999999999999987743211
Q ss_pred C-----------------ChhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 005139 345 T-----------------DPRVGETCRYLAEAHVQALQFSEAQKFCQM 375 (712)
Q Consensus 345 ~-----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 375 (712)
. .+...++.+.++.||...+++++|+..++.
T Consensus 100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 1 122347889999999999999999998765
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.68 E-value=0.00024 Score=56.54 Aligned_cols=67 Identities=18% Similarity=0.106 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139 429 AEVASVDCSIGDTYLSLSR---YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (712)
Q Consensus 429 ~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (712)
+..+.++..+|.+++..++ .++|..++++++.+ +|....++..+|.+++..|+|++|+.+++++++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3345677888888876666 79999999999999 8999999999999999999999999999999876
No 224
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.67 E-value=0.00071 Score=58.77 Aligned_cols=113 Identities=10% Similarity=0.039 Sum_probs=85.9
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhh
Q 005139 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEE 299 (712)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 299 (712)
....++.....++..+. |+.|+-+...++.+.+...+.......+.++..+|..++..++|..|...|++++.+.....
T Consensus 19 ~~~~l~dqik~L~d~~L-Y~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~ 97 (167)
T 3ffl_A 19 SHMNVIDHVRDMAAAGL-HSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALS 97 (167)
T ss_dssp --CCHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-
T ss_pred cHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHh
Confidence 34567888889999986 99999999999988765332223355678899999999999999999999999998865332
Q ss_pred cccc----------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005139 300 GQEH----------------ALAKFAGHMQLGDTYAMLGQLENSLMCYTT 333 (712)
Q Consensus 300 ~~~~----------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 333 (712)
.... .....++.+.++.||..++++++|+..++.
T Consensus 98 k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 98 KTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp -------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred cCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 1111 111345689999999999999999998775
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.67 E-value=0.00028 Score=56.11 Aligned_cols=70 Identities=16% Similarity=-0.021 Sum_probs=61.9
Q ss_pred CCChHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhch
Q 005139 217 KPGLGPLLLKQARELISSGDN--PQKALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEI 294 (712)
Q Consensus 217 ~p~~~~~l~~~a~~~~~~g~~--~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~ 294 (712)
+|+.+..+..+|..++..++. .++|..++++|+++. |..+.++..+|..++..|+|++|+.+++++++.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d---------p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE---------PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC---------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 688899999999999877642 599999999999874 556888999999999999999999999999988
Q ss_pred h
Q 005139 295 P 295 (712)
Q Consensus 295 ~ 295 (712)
.
T Consensus 73 ~ 73 (93)
T 3bee_A 73 N 73 (93)
T ss_dssp C
T ss_pred C
Confidence 6
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.52 E-value=0.00095 Score=57.64 Aligned_cols=83 Identities=5% Similarity=-0.108 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 005139 558 AGIEAQMGVMYYMLG---NYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC 634 (712)
Q Consensus 558 ~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 634 (712)
..+.+++|+++.+.+ ++++++.+++..++.- .+.....+++.||..|.+.|+|++|+.++++++++
T Consensus 32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~------~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i----- 100 (152)
T 1pc2_A 32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG------SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT----- 100 (152)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS------CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC------CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----
Confidence 468889999999988 6779999999888741 12245689999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHH
Q 005139 635 GPYHPDTLGVYSNLAGTYDA 654 (712)
Q Consensus 635 ~~~~p~~~~~~~~La~~~~~ 654 (712)
.|++..+..-.-.+-..
T Consensus 101 ---eP~n~QA~~Lk~~ie~~ 117 (152)
T 1pc2_A 101 ---EPQNNQAKELERLIDKA 117 (152)
T ss_dssp ---CTTCHHHHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHHH
Confidence 88877776655544443
No 227
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.021 Score=59.91 Aligned_cols=221 Identities=12% Similarity=-0.011 Sum_probs=140.8
Q ss_pred hCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 005139 363 ALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTY 442 (712)
Q Consensus 363 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 442 (712)
.|+++.|++.+....+..+...+ ......++..+..++...|+++...+++.... ...+..............-|
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d--~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls---kkr~qlk~ai~~~V~~~~~~ 103 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASD--LASSKEVLAKIVDLLASRNKWDDLNEQLTLLS---KKHGQLKLSIQYMIQKVMEY 103 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCS--TTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH---TTTTTSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccc--hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH---HHhhhhHHHHHHHHHHHHHH
Confidence 36677887766444443333332 22334567778889999999998877664322 22232222222222222222
Q ss_pred H-HcCCHHHHHHHHHHHHHHHHHhcC-C--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHH
Q 005139 443 L-SLSRYDEAGFAYQKALTAFKTNKG-E--NHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIAS 518 (712)
Q Consensus 443 ~-~~g~~~~A~~~~~~al~~~~~~~~-~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 518 (712)
. .....+. ......+........ . -....+.....|+.+|...|++.+|...+.....-... ..+......
T Consensus 104 l~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~---~~~~~~kve 178 (445)
T 4b4t_P 104 LKSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYG---SMEMSEKIQ 178 (445)
T ss_dssp HHHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS---SSCHHHHHH
T ss_pred HhcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh---cccHHHHHH
Confidence 2 1222221 111122222111110 0 02235677889999999999999999999987654433 334556778
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q 005139 519 GLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGE 593 (712)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 593 (712)
.+.....+|...+++.+|...+.++..........+......+...|.++...++|.+|..+|..+.......++
T Consensus 179 ~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d 253 (445)
T 4b4t_P 179 FILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSD 253 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCC
Confidence 888999999999999999999999876555554444456677888999999999999999999999887655443
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.43 E-value=0.0016 Score=56.17 Aligned_cols=67 Identities=10% Similarity=0.013 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139 430 EVASVDCSIGDTYLSLS---RYDEAGFAYQKALTAFKTNKGENHP-AVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (712)
Q Consensus 430 ~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (712)
....+.+++|.++.... +.++++.+++..++. +.| ....++++||..|++.|+|++|+.+++.++++
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45678899999999988 677999999999887 226 66899999999999999999999999999999
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.85 E-value=0.013 Score=49.77 Aligned_cols=107 Identities=19% Similarity=0.100 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005139 433 SVDCSIGDTYLSLSRY------DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (712)
Q Consensus 433 ~~~~~la~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (712)
..+..........|+. ++-++.|++|+..............+..|...|.. ...++.++|...|+.++.+ .+
T Consensus 14 d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~-hK 91 (161)
T 4h7y_A 14 EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN-CK 91 (161)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH-CT
T ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH-hH
Confidence 3444444555555777 77788888888764333223456678888888866 5669999999999999998 22
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005139 507 PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYND 549 (712)
Q Consensus 507 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (712)
..+.+|...|..-.++|+...|.+.+.+|+.+.+.
T Consensus 92 --------kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 92 --------KFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp --------TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred --------HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 23889999999999999999999999999986543
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.70 E-value=0.01 Score=49.20 Aligned_cols=78 Identities=12% Similarity=-0.033 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc----------hhhhCCCC-h-hHHHHHHHHHHHHHHhc
Q 005139 616 INEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR----------EEKLGTAN-P-DVDDEKRRLAELLKEAG 683 (712)
Q Consensus 616 ~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~----------~~~l~~~~-p-~~~~~~~~la~~~~~~g 683 (712)
...+...|.+.+.. .+....+.+++|+++....+ .+.+...+ | ...++++.||..+++.|
T Consensus 17 l~~~~~~y~~e~~~--------~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg 88 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK 88 (126)
T ss_dssp HHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcc--------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhh
Confidence 34455556665554 44667889999999988776 33344444 6 67889999999999999
Q ss_pred cHHHHHHHHHHHHHHhccc
Q 005139 684 RVRSRKAQSLETLLDANSR 702 (712)
Q Consensus 684 ~~~~A~~~~l~~~l~~~p~ 702 (712)
+|.+|. ++++.+|+..|+
T Consensus 89 ~Y~~A~-~~~~~lL~~eP~ 106 (126)
T 1nzn_A 89 EYEKAL-KYVRGLLQTEPQ 106 (126)
T ss_dssp CHHHHH-HHHHHHHHHCTT
T ss_pred hHHHHH-HHHHHHHHhCCC
Confidence 999999 999999999995
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.69 E-value=0.02 Score=48.51 Aligned_cols=108 Identities=12% Similarity=0.072 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q 005139 471 PAVASVFVRLADMYNRTGKL------RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKAL 544 (712)
Q Consensus 471 ~~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 544 (712)
|.....|..........|+. ++-++.|++|+....... ......++..|...|.. ...++.++|...|+.++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k-~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK-YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG-GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc-cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 34455666666667777888 888889999988754321 23345577788888866 56699999999999999
Q ss_pred HHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139 545 KIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587 (712)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 587 (712)
.+... .+.++...|..-.++|+...|...+.+|+.+
T Consensus 88 ~~hKk-------FAKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 88 ANCKK-------FAFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp HHCTT-------BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHhHH-------HHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 97221 1789999999999999999999999999884
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.41 E-value=0.11 Score=43.00 Aligned_cols=98 Identities=9% Similarity=-0.014 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHHHH
Q 005139 533 LEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERK-SAFFGVALNQMGLACV 611 (712)
Q Consensus 533 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~lg~~~~ 611 (712)
...+...|.+.+.. +. ....+.+.+|+++.+..+... .++++.++..+.... +...-.+++.||..+.
T Consensus 17 l~~~~~~y~~e~~~-----~~--~s~~~~F~yAw~Lv~S~~~~d----~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~y 85 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA-----GS--VSKSTQFEYAWCLVRTRYNDD----IRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 85 (126)
T ss_dssp HHHHHHHHHHHHHH-----SC--CCHHHHHHHHHHHTTSSSHHH----HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-----CC--CcHHHHHHHHHHHHcCCCHHH----HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 34455555555442 11 123677899999999877665 234444444444444 3355689999999999
Q ss_pred HhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 005139 612 QRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLA 649 (712)
Q Consensus 612 ~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La 649 (712)
+.|+|.+|+.+++..+++ .|++..+..-..
T Consensus 86 klg~Y~~A~~~~~~lL~~--------eP~n~QA~~Lk~ 115 (126)
T 1nzn_A 86 RLKEYEKALKYVRGLLQT--------EPQNNQAKELER 115 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHH
Confidence 999999999999999999 887766554443
No 233
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.02 E-value=0.15 Score=58.26 Aligned_cols=98 Identities=17% Similarity=0.107 Sum_probs=63.6
Q ss_pred HHHHcCCHhHHHH-HHHHhhc-hhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHH
Q 005139 274 IYCSLGQYNEAIP-VLEQSIE-IPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGE 351 (712)
Q Consensus 274 ~~~~~g~~~~A~~-~~~~al~-~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 351 (712)
.....+++++|.. ++.. +. . . .+..+...+...|.+++|+...+. +..
T Consensus 608 ~~~~~~~~~~a~~~~l~~-i~~~----------~----~~~~~~~~l~~~~~~~~a~~~~~~-------------~~~-- 657 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN-VEGK----------D----SLTKIARFLEGQEYYEEALNISPD-------------QDQ-- 657 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG-CCCH----------H----HHHHHHHHHHHTTCHHHHHHHCCC-------------HHH--
T ss_pred HHHHhCCHHHHHHHHHhc-CCch----------H----HHHHHHHHHHhCCChHHheecCCC-------------cch--
Confidence 3446788988876 4411 11 1 0 135566777888888887765532 111
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005139 352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLA 418 (712)
Q Consensus 352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~a 418 (712)
. .......|++++|.++.+.. .. ...|..+|..+...|+++.|+.+|.++
T Consensus 658 -~---f~~~l~~~~~~~A~~~~~~~-------~~------~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 658 -K---FELALKVGQLTLARDLLTDE-------SA------EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp -H---HHHHHHHTCHHHHHHHHTTC-------CC------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -h---eehhhhcCCHHHHHHHHHhh-------Cc------HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1 12346678999888775322 11 236889999999999999999999876
No 234
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.73 E-value=0.021 Score=59.70 Aligned_cols=109 Identities=9% Similarity=0.143 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCC
Q 005139 472 AVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAP 551 (712)
Q Consensus 472 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 551 (712)
....++..+|..|...|++++|.+.|.++...... .......+..+..++...+++..+..++.++..+....
T Consensus 129 e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~------~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~- 201 (429)
T 4b4t_R 129 EQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIS------TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG- 201 (429)
T ss_dssp CCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC------CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC------hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC-
Confidence 34567889999999999999999999999887644 23467888899999999999999999999998887654
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139 552 GQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK 587 (712)
Q Consensus 552 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 587 (712)
+++..........|.++...++|.+|..+|-.+...
T Consensus 202 ~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 202 GDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp CCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 444445556667788888999999999999887654
No 235
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.72 E-value=0.087 Score=55.07 Aligned_cols=144 Identities=13% Similarity=0.023 Sum_probs=66.4
Q ss_pred HHHHhCCHHHHHHHHHHHH--HHHHhcC-CCCCHHHHHHHHHHHHHHHHcCCHHHHH----------HHHHHHHHHHHhC
Q 005139 359 AHVQALQFSEAQKFCQMAL--DIHKDNG-SPASLEEAADRRLMGLICETKGDHEAAL----------EHLVLASMTMIAN 425 (712)
Q Consensus 359 ~~~~~g~~~~A~~~~~~al--~~~~~~~-~~~~~~~a~~~~~la~~~~~~g~~~~A~----------~~~~~al~~~~~~ 425 (712)
.++..+++++|..+....+ ....... ..-+...+.+|+..+.++...|+..... ..+..+++.....
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 3456778888888877655 2222111 1122345667888888888888776532 2333333333344
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 005139 426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (712)
Q Consensus 426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (712)
.+....+.+++.+-+.|...+.|+.|..+..++.- ... ...+...+..++.+|.++..+++|.+|.+++..|+..+.
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~f--P~~-~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLEY--PHT-DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCS--CTT-TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcC--Ccc-cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 56667888999999999999999999999988741 110 011345678889999999999999999999999987654
No 236
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.71 E-value=0.045 Score=57.25 Aligned_cols=111 Identities=21% Similarity=0.123 Sum_probs=88.0
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 005139 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507 (712)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (712)
......++..+|..|...|++++|.+.|.++...+.. .......+..+..++...+++..+..++.++..+...
T Consensus 127 e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~-----~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~- 200 (429)
T 4b4t_R 127 ELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIS-----TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK- 200 (429)
T ss_dssp CCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC-----CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT-
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc-
Confidence 3445567788999999999999999999998776432 3445778888899999999999999999999888766
Q ss_pred CCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Q 005139 508 VPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI 546 (712)
Q Consensus 508 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 546 (712)
+.+...........|.++...++|..|..+|-.++..
T Consensus 201 --~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 201 --GGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp --CCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 3344444556667788888899999999999887654
No 237
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=95.64 E-value=1.9 Score=42.44 Aligned_cols=229 Identities=18% Similarity=0.140 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 005139 394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAV 473 (712)
Q Consensus 394 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 473 (712)
.+..++.-|..+++|++|++++... +..+.+.|++..|.++..-.++.+.+..-+-.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G--------------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~--- 93 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV--------------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVD--- 93 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH--------------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCC---
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH--------------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC---
Confidence 3444555566666666666655443 44555556666666555555555555432211
Q ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHH----------
Q 005139 474 ASVFVRLADMYNRTGKL-RESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQK---------- 542 (712)
Q Consensus 474 ~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~---------- 542 (712)
......+..++.....- ..=..+..+++....+. +.........+..+|..|...+++.+|..+|--
T Consensus 94 ~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~--g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a 171 (336)
T 3lpz_A 94 GASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKF--GDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLA 171 (336)
T ss_dssp HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHH--SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhc--CCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHH
Confidence 12334444444433321 12244666777665542 222233456688899999999999999887621
Q ss_pred -H-HHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCC-----------------CChHHHHHH
Q 005139 543 -A-LKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGER-----------------KSAFFGVAL 603 (712)
Q Consensus 543 -a-l~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------------~~~~~~~~~ 603 (712)
. .+..... ...............|+..++...|..++....+.+...... ..+.+ -+
T Consensus 172 ~mL~ew~~~~--~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLL--NF 247 (336)
T 3lpz_A 172 RMEYEWYKQD--ESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLL--NF 247 (336)
T ss_dssp HHHHHHHHTS--CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHH--HH
T ss_pred HHHHHHHHhc--CCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchH--HH
Confidence 1 1111111 122333233344456778899999999888877765432211 12221 12
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc
Q 005139 604 NQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI 655 (712)
Q Consensus 604 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~ 655 (712)
..+-.+-++.+. ...|....+.+...+..+.|.....+..+|..|+..
T Consensus 248 l~lLllt~q~~~----~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi 295 (336)
T 3lpz_A 248 ISMLLLSVQKGS----PDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGI 295 (336)
T ss_dssp HHHHHHHHHSCC----HHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhcCC----HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCC
Confidence 223334445554 356666666666655544337888999999999865
No 238
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.27 E-value=0.25 Score=41.08 Aligned_cols=79 Identities=5% Similarity=-0.099 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 005139 558 AGIEAQMGVMYYMLGNYS---DSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC 634 (712)
Q Consensus 558 ~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 634 (712)
..+.+++|+++.+..+.. +++.+++..+.. .+...-..++.||..+.+.|+|.+|+.+.+..+++
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-------~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~----- 107 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH----- 107 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-----
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-----
Confidence 367788999999887653 556666555442 23345689999999999999999999999999998
Q ss_pred CCCChhhHHHHHHHHHH
Q 005139 635 GPYHPDTLGVYSNLAGT 651 (712)
Q Consensus 635 ~~~~p~~~~~~~~La~~ 651 (712)
.|++..+..-...+
T Consensus 108 ---eP~N~QA~~Lk~~I 121 (134)
T 3o48_A 108 ---ERNNKQVGALKSMV 121 (134)
T ss_dssp ---CTTCHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHH
Confidence 88777665544433
No 239
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.09 E-value=0.21 Score=56.97 Aligned_cols=50 Identities=16% Similarity=0.176 Sum_probs=37.5
Q ss_pred HHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005139 273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLE 336 (712)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 336 (712)
......|++++|.++.+.. +++ ..|..+|..+...++++.|+.+|.++-.
T Consensus 660 ~~~l~~~~~~~A~~~~~~~----------~~~----~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDE----------SAE----MKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTC----------CCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred ehhhhcCCHHHHHHHHHhh----------CcH----hHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 3456678888888775432 111 2489999999999999999999998643
No 240
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.66 E-value=0.29 Score=51.20 Aligned_cols=145 Identities=12% Similarity=0.018 Sum_probs=65.6
Q ss_pred HHHHcCCHHHHHHHHHHHH--HHHH---hCCCChhHHHHHHHHHHHHHHcCCHHHHHHHH-------HHHHHHHHHh-cC
Q 005139 401 ICETKGDHEAALEHLVLAS--MTMI---ANDQDAEVASVDCSIGDTYLSLSRYDEAGFAY-------QKALTAFKTN-KG 467 (712)
Q Consensus 401 ~~~~~g~~~~A~~~~~~al--~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-------~~al~~~~~~-~~ 467 (712)
.+...+++++|..+-...+ .... ....+...+.+|+..+.++...|+........ ...+..++.. ..
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 3456788888887776554 1221 12234456677887788887777766543221 1222233322 22
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 005139 468 ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547 (712)
Q Consensus 468 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (712)
.+....+..++.+-+.|...+.+++|..+..++. +... .......+..++.+|.++..+++|.+|.+++..|+..+
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~--~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHT--DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTT--TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcc--cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 2455677888899999999999999999998874 2111 12345568888999999999999999999999998766
Q ss_pred Hh
Q 005139 548 ND 549 (712)
Q Consensus 548 ~~ 549 (712)
+.
T Consensus 301 p~ 302 (523)
T 4b4t_S 301 PH 302 (523)
T ss_dssp SC
T ss_pred Cc
Confidence 54
No 241
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.52 E-value=0.5 Score=39.79 Aligned_cols=80 Identities=5% Similarity=-0.109 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 005139 558 AGIEAQMGVMYYMLGNYS---DSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQEC 634 (712)
Q Consensus 558 ~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 634 (712)
..+.+++|+++.+..+.. +++.+++..+.. .+...-..++.||..+.++|+|.+|..+.+..+++
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-------~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~----- 106 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH----- 106 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-------CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-----
Confidence 467889999999987655 455555554441 22234578999999999999999999999999998
Q ss_pred CCCChhhHHHHHHHHHHH
Q 005139 635 GPYHPDTLGVYSNLAGTY 652 (712)
Q Consensus 635 ~~~~p~~~~~~~~La~~~ 652 (712)
.|++..+..-...+-
T Consensus 107 ---eP~n~QA~~Lk~~Ie 121 (144)
T 1y8m_A 107 ---ERNNKQVGALKSMVE 121 (144)
T ss_dssp ---CCCCHHHHHHHHHHH
T ss_pred ---CCCcHHHHHHHHHHH
Confidence 787766554444433
No 242
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=94.34 E-value=4.2 Score=39.70 Aligned_cols=171 Identities=9% Similarity=-0.060 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Q 005139 394 DRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAV 473 (712)
Q Consensus 394 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 473 (712)
.+..+..-|..+++|++|++.+. .-+..+.+.|++..|.++..-.++.+.+...+. .
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~--------------------~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~---~ 91 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELIS--------------------QGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKV---D 91 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH--------------------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCC---S
T ss_pred HHHHHHHHHHHhcCHHHHHHHHH--------------------HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCC---C
Confidence 34444555555555555555544 445556666777777666666666666553221 2
Q ss_pred HHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHH---------
Q 005139 474 ASVFVRLADMYNRTGKLR-ESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKA--------- 543 (712)
Q Consensus 474 ~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a--------- 543 (712)
......+..++.....-+ .=..+..+++....+. +......+..+..+|..|...|++.+|..+|-..
T Consensus 92 ~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~--g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a 169 (312)
T 2wpv_A 92 DISVARLVRLIAELDPSEPNLKDVITGMNNWSIKF--SEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYV 169 (312)
T ss_dssp HHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHT--SSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhc--CCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHH
Confidence 234444555544422111 2356777788777654 2222334667899999999999999999877321
Q ss_pred ---HHHHHhCCCCCCcHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139 544 ---LKIYNDAPGQQSTVAGIEAQ-MGVMYYMLGNYSDSYDSFKNAISKLR 589 (712)
Q Consensus 544 ---l~~~~~~~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~~ 589 (712)
.+.....++..+.....+.. ....|...|+...|...|........
T Consensus 170 ~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~~~ 219 (312)
T 2wpv_A 170 DLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLERFI 219 (312)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Confidence 11122211122222333333 33456778999999999988776653
No 243
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.16 E-value=0.16 Score=42.78 Aligned_cols=63 Identities=13% Similarity=-0.021 Sum_probs=51.1
Q ss_pred hhhHHHHHHHHHHHHHccc----------hhhhCCCCh-hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005139 639 PDTLGVYSNLAGTYDAIGR----------EEKLGTANP-DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 702 (712)
Q Consensus 639 p~~~~~~~~La~~~~~~g~----------~~~l~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~ 702 (712)
.-...+.+++|+++....+ .+.+...+| ...++++.||..++++|+|.+|. ++.+.+|+..|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar-~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAK-RYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHH-HHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHH-HHHHHHHhcCCC
Confidence 3456788899998888776 333333445 57789999999999999999999 999999999995
No 244
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.88 E-value=0.2 Score=41.63 Aligned_cols=61 Identities=13% Similarity=-0.020 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHHccc----------hhhhCCCCh-hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005139 641 TLGVYSNLAGTYDAIGR----------EEKLGTANP-DVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 702 (712)
Q Consensus 641 ~~~~~~~La~~~~~~g~----------~~~l~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~ 702 (712)
...+.+++|+++..... .+.+...+| ...++++.||..+.+.|+|.+|. ++.+.+|+..|+
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar-~y~d~lL~~eP~ 110 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAK-RYVDTLFEHERN 110 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHTTCTT
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHH-HHHHHHHhhCCC
Confidence 34678888888887766 233334456 56889999999999999999999 999999999996
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.61 E-value=0.52 Score=52.23 Aligned_cols=121 Identities=7% Similarity=-0.083 Sum_probs=81.7
Q ss_pred hCC-HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHH----hCC-CC-----
Q 005139 363 ALQ-FSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICE---TKGDHEAALEHLVLASMTMI----AND-QD----- 428 (712)
Q Consensus 363 ~g~-~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~---~~g~~~~A~~~~~~al~~~~----~~~-~~----- 428 (712)
.++ ++.|+.++++.....+... +++..+.+.. ...+--+|+..+.+++.... ... .+
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~---------~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHD---------IYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGH---------HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchh---------HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 344 5778888887665543221 2222222222 12334567777766664321 111 11
Q ss_pred --hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005139 429 --AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENA 500 (712)
Q Consensus 429 --~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 500 (712)
+.....+...+..+...|+|+-|+.+.++|+.. .|....+|..|+.+|..+|+|+.|+-.++.+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 222345666788888999999999999999999 8888999999999999999999999887665
No 246
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.56 E-value=6.6 Score=44.46 Aligned_cols=302 Identities=13% Similarity=0.101 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 005139 265 VMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGE 344 (712)
Q Consensus 265 ~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 344 (712)
..+...||.++ .|+.++++..+.+.+.-. +...+.....+++.+|.++...++ +++.++...+.-.....+.
T Consensus 376 ~sA~aSLGlIh--~g~~~~gl~~L~~yL~~~----~s~~~~ik~GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~~~~ 447 (963)
T 4ady_A 376 FTATASLGVIH--KGNLLEGKKVMAPYLPGS----RASSRFIKGGSLYGLGLIYAGFGR--DTTDYLKNIIVENSGTSGD 447 (963)
T ss_dssp HHHHHHHHHHT--SSCTTTHHHHHTTTSTTS----CCSCHHHHHHHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSCCSC
T ss_pred HHHHHHhhhhc--cCchHHHHHHHHHhcccc----CCCcHHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHcCccccccc
Confidence 33444555555 577788888887766421 123344566678888988877664 5777666665442100000
Q ss_pred --CChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139 345 --TDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTM 422 (712)
Q Consensus 345 --~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 422 (712)
.......+...||.++.-.++ +++...+...+.- . .......+-..+|.++.-.|+-+-....+..+..
T Consensus 448 ~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~d---d---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e-- 518 (963)
T 4ady_A 448 EDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYN---D---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE-- 518 (963)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHT---C---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH--
T ss_pred cccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhc---C---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc--
Confidence 011223456678887776666 3455555554431 1 1111223556788888888987666555554431
Q ss_pred HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005139 423 IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPA-VASVFVRLADMYNRTGKLRESKSYCENAL 501 (712)
Q Consensus 423 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 501 (712)
. . .+...-...+|..+...|+.+.+....+..... .+|. ...+...+|..|...|+...-..++..+.
T Consensus 519 --~-~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-------~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~ 587 (963)
T 4ady_A 519 --T-Q-HGNITRGLAVGLALINYGRQELADDLITKMLAS-------DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAV 587 (963)
T ss_dssp --C-S-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-------SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred --c-C-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc
Confidence 1 2 222233344555555677877666665544332 1332 23345667888889999655444665554
Q ss_pred HHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHH
Q 005139 502 RIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSF 581 (712)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 581 (712)
.- .........-+|..+...|+.+.+... +.+.... ++......+-..+|.+....++ .+|+..+
T Consensus 588 ~d---------~~d~VRraAViaLGlI~~g~~e~v~rl----v~~L~~~-~d~~VR~gAalALGli~aGn~~-~~aid~L 652 (963)
T 4ady_A 588 SD---------SNDDVRRAAVIALGFVLLRDYTTVPRI----VQLLSKS-HNAHVRCGTAFALGIACAGKGL-QSAIDVL 652 (963)
T ss_dssp HC---------SCHHHHHHHHHHHHHHTSSSCSSHHHH----TTTGGGC-SCHHHHHHHHHHHHHHTSSSCC-HHHHHHH
T ss_pred cC---------CcHHHHHHHHHHHHhhccCCHHHHHHH----HHHHHhc-CCHHHHHHHHHHHHHhccCCCc-HHHHHHH
Confidence 32 111122223334444445554332222 2222222 2222222233345555433343 5666666
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCC
Q 005139 582 KNAISKLRAIGERKSAFFGVALNQMGLACVQRYS 615 (712)
Q Consensus 582 ~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 615 (712)
.+... +.+......+...||.+.....+
T Consensus 653 ~~L~~------D~d~~Vrq~Ai~ALG~Ig~gtnn 680 (963)
T 4ady_A 653 DPLTK------DPVDFVRQAAMIALSMILIQQTE 680 (963)
T ss_dssp HHHHT------CSSHHHHHHHHHHHHHHSTTCCT
T ss_pred HHHcc------CCCHHHHHHHHHHHHHHhcCCcc
Confidence 66532 33333333466677766665543
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.56 E-value=2 Score=43.94 Aligned_cols=103 Identities=12% Similarity=-0.014 Sum_probs=80.1
Q ss_pred HHHHHHcCCHhHHHHHHHHhhchhhhhhcccc---hH----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139 272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEH---AL----------AKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQ 338 (712)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 338 (712)
|......|+.+.|...+.+|+.+....+-+.. ++ ....+...++..+...|++.+|+..+..++..
T Consensus 122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~- 200 (388)
T 2ff4_A 122 GVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE- 200 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 44445578999999999999998643221211 11 12334566788889999999999999999887
Q ss_pred HHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Q 005139 339 KQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKD 382 (712)
Q Consensus 339 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 382 (712)
+|..-.++..+-.++...|+..+|+..|+++......
T Consensus 201 -------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~ 237 (388)
T 2ff4_A 201 -------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLAD 237 (388)
T ss_dssp -------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 7877788999999999999999999999999887654
No 248
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.46 E-value=0.35 Score=53.62 Aligned_cols=59 Identities=17% Similarity=0.025 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 005139 310 GHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQFSEAQKFCQMA 376 (712)
Q Consensus 310 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 376 (712)
.+...+..+...|+|+-|+.+.++|+.. .|....+|+.|+.+|..+|+|+.|+-.+..+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTEL--------ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhc--------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4666788888999999999999999999 6888999999999999999999999776654
No 249
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=93.12 E-value=0.94 Score=51.46 Aligned_cols=106 Identities=5% Similarity=-0.080 Sum_probs=82.4
Q ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 005139 347 PRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAND 426 (712)
Q Consensus 347 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 426 (712)
.....+|..|-..|.+.|+.++|..+|.+..........++ ..+|+.|-..|...|++++|.+.|.+.. ..+
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd----vvTYNtLI~Glck~G~~~eA~~Lf~eM~----~~G 195 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT----LDMYNAVMLGWARQGAFKELVYVLFMVK----DAG 195 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHH----HTT
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC----HhHHHHHHHHHHhCCCHHHHHHHHHHHH----HcC
Confidence 45566888999999999999999999988765543333333 3489999999999999999999998764 335
Q ss_pred CChhHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHH
Q 005139 427 QDAEVASVDCSIGDTYLSLSRY-DEAGFAYQKALTA 461 (712)
Q Consensus 427 ~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~ 461 (712)
..|+. .+|+.+-.++.+.|+. ++|..+|++....
T Consensus 196 ~~PDv-vTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 196 LTPDL-LSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp CCCCH-HHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCcH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 55554 5677777788898985 7888999887664
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.87 E-value=1.2 Score=45.60 Aligned_cols=105 Identities=11% Similarity=0.083 Sum_probs=75.7
Q ss_pred HcCCHHHHHHHHHHHHHHHHhCC-----CC-----------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 005139 404 TKGDHEAALEHLVLASMTMIAND-----QD-----------AEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKG 467 (712)
Q Consensus 404 ~~g~~~~A~~~~~~al~~~~~~~-----~~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 467 (712)
..|+.+.|...+.+|+.+....- .. .....+...++..+...|++.+|+..+..++..
T Consensus 127 ~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~------ 200 (388)
T 2ff4_A 127 AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE------ 200 (388)
T ss_dssp HTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred hCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------
Confidence 45666777777777665442110 00 112234556778888999999999999999888
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhH
Q 005139 468 ENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEI 516 (712)
Q Consensus 468 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 516 (712)
+|..-.++..+..++...|+..+|+..|+++.+.+..-++-...+..
T Consensus 201 --~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 201 --HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp --STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 88878899999999999999999999999998876554333334443
No 251
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.86 E-value=1.5 Score=38.73 Aligned_cols=103 Identities=12% Similarity=0.001 Sum_probs=66.4
Q ss_pred HHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHH
Q 005139 273 AIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGET 352 (712)
Q Consensus 273 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 352 (712)
......|+++.|.++.+..- . -..|..||......|+++-|..+|.++-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l~----------~----~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~--------------- 63 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKLN----------D----SITWERLIQEALAQGNASLAEMIYQTQHSF--------------- 63 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHC----------C----HHHHHHHHHHHHHTTCHHHHHHHHHHTTCH---------------
T ss_pred HHHHhcCCHHHHHHHHHHhC----------C----HHHHHHHHHHHHHcCChHHHHHHHHHhCCH---------------
Confidence 34567899999998876531 1 124899999999999999999999886443
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005139 353 CRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLA 418 (712)
Q Consensus 353 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~a 418 (712)
..+..+|...|+.+.-.+. .++....+. ++....+++.+|+++++++.|.+.
T Consensus 64 -~~L~~Ly~~tg~~e~L~kl----a~iA~~~g~---------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 64 -DKLSFLYLVTGDVNKLSKM----QNIAQTRED---------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp -HHHHHHHHHHTCHHHHHHH----HHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred -HHHHHHHHHhCCHHHHHHH----HHHHHHCcc---------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 1233455566776543333 233333222 334455667788888888777543
No 252
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.85 E-value=0.94 Score=39.97 Aligned_cols=101 Identities=10% Similarity=-0.046 Sum_probs=66.2
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 005139 360 HVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIG 439 (712)
Q Consensus 360 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 439 (712)
....|+++.|.+..+.. .. ...|..||......|+++-|..+|.++- + +..+.
T Consensus 15 AL~lg~l~~A~e~a~~l-------~~------~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-------D-------~~~L~ 67 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-------ND------SITWERLIQEALAQGNASLAEMIYQTQH-------S-------FDKLS 67 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-------CC------HHHHHHHHHHHHHTTCHHHHHHHHHHTT-------C-------HHHHH
T ss_pred HHhcCCHHHHHHHHHHh-------CC------HHHHHHHHHHHHHcCChHHHHHHHHHhC-------C-------HHHHH
Confidence 45789999998887653 11 2368999999999999999999998762 2 23344
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005139 440 DTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENA 500 (712)
Q Consensus 440 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 500 (712)
.+|...|+.+.-....+.+... + . +.....+++.+|++++++++|.+.
T Consensus 68 ~Ly~~tg~~e~L~kla~iA~~~----g---~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 68 FLYLVTGDVNKLSKMQNIAQTR----E---D------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHT----T---C------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHHHC----c---c------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 5566677775544443333221 1 1 122234567788988888887654
No 253
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=92.79 E-value=4.4 Score=34.99 Aligned_cols=170 Identities=12% Similarity=0.022 Sum_probs=102.1
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------HH
Q 005139 520 LTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISK----------LR 589 (712)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~~ 589 (712)
-..++..+.-.|+|..++-.+.. . ..+...+.-+.+|...++|..|+..++..+.- .-
T Consensus 36 ~lL~~I~LyyngEY~R~Lf~L~~-------l-----NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~ 103 (242)
T 3kae_A 36 RMLMSIVLYLNGEYTRALFHLHK-------L-----NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARI 103 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHT-------C-----CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHH
T ss_pred HhhhhhhhhhcchHhHHHHHHHh-------c-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccc
Confidence 34567778888998887765532 1 11245566788999999999999999998731 00
Q ss_pred HhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH------HHH-hcCCCCh------hhH---------HHHHH
Q 005139 590 AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSI------LEQ-ECGPYHP------DTL---------GVYSN 647 (712)
Q Consensus 590 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~~~-~~~~~~p------~~~---------~~~~~ 647 (712)
+.--.++..-...+..+|.++.+.|+.++|+.+|.....+ .+. ++...-| +.. .-+..
T Consensus 104 ~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d 183 (242)
T 3kae_A 104 QEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSD 183 (242)
T ss_dssp HTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHH
T ss_pred ceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhh
Confidence 1111112223357788999999999999999999988765 010 0110001 000 00011
Q ss_pred HHHHHHHccc--hhhhCCCChhHHHH-HHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005139 648 LAGTYDAIGR--EEKLGTANPDVDDE-KRRLAELLKEAGRVRSRKAQSLETLLDANSR 702 (712)
Q Consensus 648 La~~~~~~g~--~~~l~~~~p~~~~~-~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~ 702 (712)
...++....+ .++....-|..... ....+.-|...|-.++.+ ..|..+-..+|.
T Consensus 184 ~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~-~lf~~lR~kDP~ 240 (242)
T 3kae_A 184 SIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSK-ACFELVRRKDPM 240 (242)
T ss_dssp HHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHSTT
T ss_pred HHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHH-HHHHHHHhcCCC
Confidence 1111111111 22333344544432 335577788899999999 999999888885
No 254
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=92.75 E-value=0.9 Score=51.63 Aligned_cols=100 Identities=10% Similarity=-0.002 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChh---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 005139 392 AADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE---VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE 468 (712)
Q Consensus 392 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 468 (712)
..+|+.+-..|...|+.++|...|....... ... ...+|+.+-..|.+.|++++|.++|++..+. |
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~-----~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-----G- 195 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR-----QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-----G- 195 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSH-----HHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-----T-
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-----hcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-
Confidence 3345555555555555555555554432100 000 2344555555555555555555555554332 1
Q ss_pred CCHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHH
Q 005139 469 NHPAVASVFVRLADMYNRTGKL-RESKSYCENALRI 503 (712)
Q Consensus 469 ~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~ 503 (712)
-.| ...+|+.+-..+.+.|+. ++|..+|++....
T Consensus 196 ~~P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 196 LTP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp CCC-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 022 233444444455555542 4455555555443
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.90 E-value=2.6 Score=50.03 Aligned_cols=166 Identities=10% Similarity=0.005 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHH----------------HhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005139 519 GLTDVSSIYESMNELEQAIKLLQKALKIY----------------NDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFK 582 (712)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~----------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 582 (712)
..+.+|.++...|++++|..+|++|-.-. .............|..+..++.+.+.++.++++.+
T Consensus 844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~ 923 (1139)
T 4fhn_B 844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 923 (1139)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35789999999999999999998863111 11111122334567788889999999999999999
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccchhh--
Q 005139 583 NAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGREEK-- 660 (712)
Q Consensus 583 ~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~~~~-- 660 (712)
.|++.. ...........|..+=..+...|+|++|...+...-. ......++..|-...+..|....
T Consensus 924 lAi~~~---~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd---------~~~r~~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 924 LADASK---ETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST---------TPLKKSCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp HHHHHC---CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH---------SSSCHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHhc---cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC---------HHHHHHHHHHHHHHHHhCCChhhhh
Confidence 998752 2222222334677888889999999999877643221 22234455555555555555000
Q ss_pred -----------------------hCCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Q 005139 661 -----------------------LGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDA 699 (712)
Q Consensus 661 -----------------------l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~ 699 (712)
.....|. .+.-|=-.+...|++++|..-.|+.+.+.
T Consensus 992 ~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~---Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 992 NYSMPTLRQDVDNLLERKAFQMINVESQPC---WYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp HHTTTSCHHHHHHHHHHHHHHHHHHCCSTH---HHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHhCCccccCCC---HHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence 0111222 23333444556899998886677766544
No 256
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.68 E-value=10 Score=36.89 Aligned_cols=170 Identities=8% Similarity=-0.064 Sum_probs=90.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCCh
Q 005139 435 DCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPE 514 (712)
Q Consensus 435 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 514 (712)
+..++.-|..+++|++|++++..... .+.+.|++..|.++..-.++.+.+.. ...
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~----------------------~ll~~~Q~~sa~DLa~llvev~~~~~---~~~ 90 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGAL----------------------SFLKAKQGGSGTDLIFYLLEVYDLAE---VKV 90 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH----------------------HHHHTTCHHHHHHHHHHHHHHHHHTT---CCC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH----------------------HHHHCCCcchHHHHHHHHHHHHHHcC---CCC
Confidence 33444556666777777666554433 33444555555444444444444321 011
Q ss_pred hHHHHHHHHHHHHHHcccHH-HHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH--------HH
Q 005139 515 EIASGLTDVSSIYESMNELE-QAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSFKN--------AI 585 (712)
Q Consensus 515 ~~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~--------al 585 (712)
.......+..++.....-+ .=.++..+++....+..+........+..+|..|+..|++.+|..+|-. ..
T Consensus 91 -~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a 169 (312)
T 2wpv_A 91 -DDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYV 169 (312)
T ss_dssp -SHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHH
Confidence 1122333334333321111 1255667777776665333344456788899999999999999987731 11
Q ss_pred HHHHHhCCC---CChHHHHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHH
Q 005139 586 SKLRAIGER---KSAFFGVALNQMG-LACVQRYSINEAVELFEEARSIL 630 (712)
Q Consensus 586 ~~~~~~~~~---~~~~~~~~~~~lg-~~~~~~g~~~~A~~~~~~al~~~ 630 (712)
.+.-+.... ..+.....+...+ ..|...|+...|..+|.......
T Consensus 170 ~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~~ 218 (312)
T 2wpv_A 170 DLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLERF 218 (312)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 111111111 1222233333333 45678899999999998877665
No 257
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.43 E-value=23 Score=40.23 Aligned_cols=167 Identities=13% Similarity=0.132 Sum_probs=86.7
Q ss_pred ChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCC---CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 005139 513 PEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQ---QSTVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLR 589 (712)
Q Consensus 513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 589 (712)
.....-+++.+|.++...++ +++.++...+.-.....+. ......+...||.+|...++ +++.+.+...+.
T Consensus 409 ~~ik~GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~--- 482 (963)
T 4ady_A 409 RFIKGGSLYGLGLIYAGFGR--DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLY--- 482 (963)
T ss_dssp HHHHHHHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHh---
Confidence 33456778888888776664 6777777766543211121 11222345578888776665 455566655554
Q ss_pred HhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc-------hhhhC
Q 005139 590 AIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR-------EEKLG 662 (712)
Q Consensus 590 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~-------~~~l~ 662 (712)
+........+-..||.++...|+-+-...++..+.+- ..+...-...+|..+...|+ .+.+.
T Consensus 483 ---dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~--------~~e~vrR~aalgLGll~~g~~e~~~~li~~L~ 551 (963)
T 4ady_A 483 ---NDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET--------QHGNITRGLAVGLALINYGRQELADDLITKML 551 (963)
T ss_dssp ---TCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC--------SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHH
T ss_pred ---cCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc--------CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHH
Confidence 1111111246667888888888876655555554431 12222222333333334444 22222
Q ss_pred -CCChhHH-HHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 005139 663 -TANPDVD-DEKRRLAELLKEAGRVRSRKAQSLETLL 697 (712)
Q Consensus 663 -~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~l~~~l 697 (712)
..+|... .+...+|..|.-.|+...-. +.+..+.
T Consensus 552 ~~~dp~vRygaa~alglAyaGTGn~~aIq-~LL~~~~ 587 (963)
T 4ady_A 552 ASDESLLRYGGAFTIALAYAGTGNNSAVK-RLLHVAV 587 (963)
T ss_dssp HCSCHHHHHHHHHHHHHHTTTSCCHHHHH-HHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHhcCCCCHHHHH-HHHHHhc
Confidence 2334332 23455677777777754333 4554444
No 258
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=91.37 E-value=3.5 Score=35.59 Aligned_cols=98 Identities=16% Similarity=0.070 Sum_probs=72.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------HHH
Q 005139 395 RRLMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA----------FKT 464 (712)
Q Consensus 395 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~~~ 464 (712)
-..++.++.-.|.|..++-++.. . ..+.+.+.-+.||....+|..|+..++..++- .-+
T Consensus 36 ~lL~~I~LyyngEY~R~Lf~L~~---------l--NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~ 104 (242)
T 3kae_A 36 RMLMSIVLYLNGEYTRALFHLHK---------L--NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQ 104 (242)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHT---------C--CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHH
T ss_pred HhhhhhhhhhcchHhHHHHHHHh---------c--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccc
Confidence 44678888899999999877642 2 22445556778999999999999999998831 111
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139 465 NKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (712)
Q Consensus 465 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (712)
..--+..+.-..+..+|.++...|+.++|+.++.....+
T Consensus 105 ~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 105 EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 111123344567888999999999999999999988776
No 259
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.93 E-value=13 Score=36.54 Aligned_cols=229 Identities=11% Similarity=0.031 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChh
Q 005139 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIANDQDAE 430 (712)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 430 (712)
..+..++.=|...++|++|++++.... ..+...|++..|.++....++.+...+...+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~GA----------------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~ 93 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASVS----------------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVD 93 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHH----------------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCC
Confidence 344455555667777777777655443 3344445555555555444444444333333
Q ss_pred HHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH-----------
Q 005139 431 VASVDCSIGDTYLSLSRYD-EAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCE----------- 498 (712)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~----------- 498 (712)
. .....+..++.....-+ .=..+.++++....+.+ .........+..+|..|+..+++.+|..+|-
T Consensus 94 ~-~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g-~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a 171 (336)
T 3lpz_A 94 G-ASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFG-DYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLA 171 (336)
T ss_dssp H-HHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHS-SCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHH
T ss_pred H-HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHH
Confidence 2 33344455544443211 22456777777766643 2233445677889999999999999988762
Q ss_pred -HHHHHHhcCCCCCCChhHHHHHH-HHHHHHHHcccHHHHHHHHHHHHHHHHh-CCC---------------CC-CcHHH
Q 005139 499 -NALRIYEKPVPGVPPEEIASGLT-DVSSIYESMNELEQAIKLLQKALKIYND-APG---------------QQ-STVAG 559 (712)
Q Consensus 499 -~al~~~~~~~~~~~~~~~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~---------------~~-~~~~~ 559 (712)
-..+..... .+.....+. .....|+..++...|...+....+.... .+. .+ ..+..
T Consensus 172 ~mL~ew~~~~-----~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~l~~~~p~L~~q~~~~~~~~~~~~p~~PLLN 246 (336)
T 3lpz_A 172 RMEYEWYKQD-----ESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPLLN 246 (336)
T ss_dssp HHHHHHHHTS-----CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCTTSCCEESCC--CCCEECTTCHHHH
T ss_pred HHHHHHHHhc-----CCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcCCCccccccccCCcccccCCCCchHH
Confidence 111122221 122233333 3344577889999999988777765422 111 00 11111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHh
Q 005139 560 IEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQR 613 (712)
Q Consensus 560 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 613 (712)
.. .+..+-...+. ...|....+.+.......++.+...+..+|..|+..
T Consensus 247 Fl-~lLllt~q~~~----~~lF~~L~~~Y~~~l~rd~~~~~~~L~~IG~~YFgi 295 (336)
T 3lpz_A 247 FI-SMLLLSVQKGS----PDLFRQLKSKYEANLNELNGIWDTALELIAEMYFGI 295 (336)
T ss_dssp HH-HHHHHHHHSCC----HHHHHHHHHHTHHHHHTTTTTTHHHHHHHHHHHHCC
T ss_pred HH-HHHHHHHhcCC----HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCC
Confidence 22 22223334443 355665555554433333323446777777777754
No 260
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.70 E-value=8.5 Score=45.57 Aligned_cols=102 Identities=11% Similarity=-0.007 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----------------HhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005139 394 DRRLMGLICETKGDHEAALEHLVLASMTM-----------------IANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQ 456 (712)
Q Consensus 394 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-----------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 456 (712)
..+.+|.++...|++++|..+|+++...+ ............|..+..++...+.++.+++..+
T Consensus 844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~ 923 (1139)
T 4fhn_B 844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 923 (1139)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34789999999999999999998873111 1111122234567888889999999999999999
Q ss_pred HHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005139 457 KALTAFKTNKGENHPA-VASVFVRLADMYNRTGKLRESKSYCEN 499 (712)
Q Consensus 457 ~al~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 499 (712)
.|++.. ..+.+. ....|.++-..+...|+|++|...+..
T Consensus 924 lAi~~~----~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 924 LADASK----ETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp HHHHHC----CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred HHHHhc----cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 998762 223333 334678888899999999999777643
No 261
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=89.36 E-value=3.3 Score=43.60 Aligned_cols=81 Identities=10% Similarity=0.071 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCC
Q 005139 559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYH 638 (712)
Q Consensus 559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 638 (712)
.++..||.+......+..|..+|.+|..+. |..+..++.||.+....|+.-+|+-+|-+++.. .
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~--------P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~--------~ 216 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLV--------PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV--------K 216 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--------S
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhC--------CCCCchHHHHHHHHhcccccHHHHHHHHHHHhc--------C
Confidence 467789999999999999999999999973 445689999999999999999999999999875 3
Q ss_pred hhhHHHHHHHHHHHHHc
Q 005139 639 PDTLGVYSNLAGTYDAI 655 (712)
Q Consensus 639 p~~~~~~~~La~~~~~~ 655 (712)
.....+..||..++...
T Consensus 217 ~Pf~~a~~nL~~~f~~~ 233 (497)
T 1ya0_A 217 FPFPAASTNLQKALSKA 233 (497)
T ss_dssp BCCHHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHH
Confidence 34566778888777654
No 262
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=89.24 E-value=0.97 Score=47.65 Aligned_cols=63 Identities=16% Similarity=0.172 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139 433 SVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (712)
Q Consensus 433 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (712)
.++..+|.+......+..|..+|.+|..+ .|.....++.||.+....|+.-+|+-+|-+++..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~--------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~ 215 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQL--------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHh--------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence 46778999999999999999999999999 8999999999999999999999999999988864
No 263
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.64 E-value=20 Score=36.42 Aligned_cols=131 Identities=11% Similarity=0.061 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----------CCCChhHHHHHHHH
Q 005139 370 QKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIA-----------NDQDAEVASVDCSI 438 (712)
Q Consensus 370 ~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-----------~~~~~~~~~~~~~l 438 (712)
+++|...+.-+.....+ ...+ ..+..+.....+.++|++++.+....... .........+...+
T Consensus 59 ~~ly~~fi~~f~~kin~--L~lv---~~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i 133 (393)
T 4b4t_O 59 LRLYDNFVSKFYDKINQ--LSVV---KYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEI 133 (393)
T ss_dssp HHHHHHHHHHHHHHSCS--HHHH---HTTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCH--HHHH---HHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHH
Confidence 45556555555443322 1111 11234556678899999998765322211 01123355667788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 005139 439 GDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (712)
Q Consensus 439 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (712)
+..|...|+.++|..+++++-.......+.+.......+...+..|...+++..+...+-.++..+.
T Consensus 134 ~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~ 200 (393)
T 4b4t_O 134 ARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLE 200 (393)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999888876665566777788888889999999998887777777654
No 264
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=87.19 E-value=7.8 Score=37.74 Aligned_cols=78 Identities=18% Similarity=0.115 Sum_probs=58.6
Q ss_pred CChhHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005139 427 QDAEVASVDCSIGDTYLSL--SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIY 504 (712)
Q Consensus 427 ~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 504 (712)
.-...+.++.+||.+-... .....++.+|.+|+...+..++..| ...|..+|..+++.+++.+|+..+-.|-...
T Consensus 250 hL~rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~H---vYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi 326 (472)
T 3re2_A 250 HIKTYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHH---IYPYTYLGGYYYRKKKYYEAIASWVDAGYVA 326 (472)
T ss_dssp TTTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred chhhCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCC---ccchhhhhhhhhhcchHHHHHHHHHHHHHHH
Confidence 3344455666666665442 2223489999999999998885433 5678889999999999999999999999887
Q ss_pred hcC
Q 005139 505 EKP 507 (712)
Q Consensus 505 ~~~ 507 (712)
+..
T Consensus 327 ~~Y 329 (472)
T 3re2_A 327 GKY 329 (472)
T ss_dssp TTS
T ss_pred HHc
Confidence 764
No 265
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.93 E-value=28 Score=35.26 Aligned_cols=110 Identities=8% Similarity=-0.049 Sum_probs=77.0
Q ss_pred HHHHHHcCCHhHHHHHHHHhhchhhhhhcc--------cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 005139 272 AAIYCSLGQYNEAIPVLEQSIEIPVIEEGQ--------EHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLG 343 (712)
Q Consensus 272 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 343 (712)
..+.....+.++|++++++........... .+....+.+...++..|...|+.+.|..+++++-.......+
T Consensus 83 ~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~ 162 (393)
T 4b4t_O 83 LASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDS 162 (393)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCC
Confidence 445566789999999998775543221111 112234556788999999999999999999999887766433
Q ss_pred CCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 005139 344 ETDPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHK 381 (712)
Q Consensus 344 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 381 (712)
.+.......|...+..|...+++..+...+-..+....
T Consensus 163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~ 200 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLE 200 (393)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Confidence 33334556666678888889999988777777766554
No 266
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.81 E-value=16 Score=34.41 Aligned_cols=119 Identities=11% Similarity=-0.039 Sum_probs=80.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Q 005139 567 MYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYS 646 (712)
Q Consensus 567 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~ 646 (712)
-+++.|..++|+......++. .|..+.....|.++++-.|+++.|..-++.+.++ +|+......
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--------~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--------~p~~~~~a~ 69 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--------FPEYLPGAS 69 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CGGGHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhhHHHH
Confidence 356789999999999888873 3444577778889999999999999999999998 887665433
Q ss_pred HHHHH-HHHccchhhh-------CCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Q 005139 647 NLAGT-YDAIGREEKL-------GTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLDANSR 702 (712)
Q Consensus 647 ~La~~-~~~~g~~~~l-------~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~~~p~ 702 (712)
.+..+ ...+-+.+.+ ....|........-+......|+.++|. ..-..+++.-|.
T Consensus 70 ~yr~lI~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~-~lr~~A~e~ap~ 132 (273)
T 1zbp_A 70 QLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVS-ELALQIEELRQE 132 (273)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHH-HHHHHHHhcCcc
Confidence 32222 1122221111 1122333334444566667789999999 888889888765
No 267
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=85.14 E-value=24 Score=32.79 Aligned_cols=183 Identities=14% Similarity=0.076 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhCCCChh
Q 005139 352 TCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET-KGDHEAALEHLVLASMTMIANDQDAE 430 (712)
Q Consensus 352 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~ 430 (712)
-+..+|.+.-+.++|++...+..++........ .. -.+.|..+|-. .|....+...+......-...+....
T Consensus 6 ~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt----~E---ERnLLSvAYKNvig~rR~swRiissieqke~~~~~~~~ 78 (248)
T 3uzd_A 6 QLVQKARLAEQAERYDDMAAAMKNVTELNEPLS----NE---ERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKK 78 (248)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCC----HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCC----HH---HHHHHHHHHHhhcccchHHHHHHHHHHHHhhccCCHHH
Confidence 345678888899999999998888776432211 11 12233333321 22222233322211111000111111
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC---CC--HHHHHHHHHHHHHHHHcC----------CHHHHHH
Q 005139 431 VASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE---NH--PAVASVFVRLADMYNRTG----------KLRESKS 495 (712)
Q Consensus 431 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~--~~~~~~~~~la~~~~~~g----------~~~~A~~ 495 (712)
...+......+ -.+-...+...+.+.....-+ +. ...+..+-..|..|...- -.+.|..
T Consensus 79 ~~~i~~yr~ki------e~EL~~iC~dil~lld~~Lip~a~~~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~~~a~~ 152 (248)
T 3uzd_A 79 IEMVRAYREKI------EKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEK 152 (248)
T ss_dssp HHHHHHHHHHH------HHHHHHHHHHHHHHHHHTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------HHHHHHHHHhHHHHHHHhcCCcCCCcchhHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHH
Confidence 11111000111 122233444445444433211 12 233344444566654321 1367888
Q ss_pred HHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHHH
Q 005139 496 YCENALRIYEKPVPGVPPEEIASGLTDVSSIYE-SMNELEQAIKLLQKALKIYN 548 (712)
Q Consensus 496 ~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~ 548 (712)
.|+.|..+....+ +..+|.......+.+..|+ -+++.++|..+.++|+.-.-
T Consensus 153 aY~~A~~iA~~~L-~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~Ai 205 (248)
T 3uzd_A 153 AYSEAHEISKEHM-QPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAI 205 (248)
T ss_dssp HHHHHHHHHHHHS-CTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 9999999887655 3445554445555555555 48999999998888876543
No 268
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=84.93 E-value=11 Score=37.52 Aligned_cols=75 Identities=16% Similarity=0.132 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005139 430 EVASVDCSIGDTYLSL---SRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (712)
Q Consensus 430 ~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (712)
....++.+||.+-... |+ ..++.+|.+|+...+..+...| ...|..+|..+++.+++.+|+..+-.+-...+.
T Consensus 275 rYPmALgnLgDLEe~~pt~gr-~~~~~L~~~AI~sa~~~Y~n~H---vYPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~ 350 (550)
T 3u84_A 275 RYPMALGNLADLEELEPTPGR-PDPLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAWADTATVIQD 350 (550)
T ss_dssp TCHHHHHHHHHHHHHSCCTTC-CCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred hCchhhcchhhHhhcCCCCCC-CCHHHHHHHHHHHHHHHhccCC---ccceeecchhhhhcchHHHHHHHHHHHHHHHHH
Confidence 3345555666554432 22 2488999999999998875433 567888999999999999999999999888776
Q ss_pred CC
Q 005139 507 PV 508 (712)
Q Consensus 507 ~~ 508 (712)
..
T Consensus 351 YN 352 (550)
T 3u84_A 351 YN 352 (550)
T ss_dssp SC
T ss_pred cC
Confidence 43
No 269
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=82.61 E-value=18 Score=36.10 Aligned_cols=83 Identities=13% Similarity=0.041 Sum_probs=60.4
Q ss_pred ChhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Q 005139 428 DAEVASVDCSIGDTYLSLS--RYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYE 505 (712)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 505 (712)
-.....++.+||.+-...- ....++.+|++|+...+..+...+ ...|..+|-.+++.+++.+|+.++-++-....
T Consensus 258 l~~YPmALgnLgDLEei~pt~grp~~~~Lf~~AI~~ar~~Y~~~h---vYPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~ 334 (489)
T 4gq4_A 258 LERYPMALGNLADLEELEPTPGRPDPLTLYHKGIASAKTYYRDEH---IYPYMYLAGYHCRNRNVREALQAWADTATVIQ 334 (489)
T ss_dssp TTTCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred hhhcchhhhcccCHhhcCCCCCCCCHHHHHHHHHHHHHHhcccCc---ccceeecchHHHHhhhHHHHHHHhhhhhhhhh
Confidence 3344555666666554322 223578899999999999885544 56788899999999999999999999998887
Q ss_pred cCCCCCCC
Q 005139 506 KPVPGVPP 513 (712)
Q Consensus 506 ~~~~~~~~ 513 (712)
.......+
T Consensus 335 ~YnY~reD 342 (489)
T 4gq4_A 335 DYNYCRED 342 (489)
T ss_dssp TSCCCTTC
T ss_pred hcccccch
Confidence 75433333
No 270
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=81.54 E-value=35 Score=31.99 Aligned_cols=182 Identities=14% Similarity=0.097 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--HhcCCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhCCC
Q 005139 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIH--KDNGSPASLEEAADRRLMGLICE-TKGDHEAALEHLVLASMTMIANDQ 427 (712)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~a~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~ 427 (712)
.-+..++.+..+.++|++...+..++.... +.. ... -.+.|..+|- ..|....+...+..........+.
T Consensus 9 e~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eL----t~E---ERnLLSvaYKNvig~rR~swRiissieqke~~k~~ 81 (260)
T 1o9d_A 9 EENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEEL----TVE---ERNLLSVAYKNVIGARRASWRIISSIEQKEESRGN 81 (260)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCC----CHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCC----CHH---HHHHHHHHHHHhhcchHHHHHHHHHHHHHhhccCc
Confidence 445677888889999999999999988743 211 111 1223333332 112222233332221110010111
Q ss_pred ChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--CCH-HHHHHHHHHHHHHHHcC----------CHHHHH
Q 005139 428 DAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE--NHP-AVASVFVRLADMYNRTG----------KLRESK 494 (712)
Q Consensus 428 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~-~~~~~~~~la~~~~~~g----------~~~~A~ 494 (712)
.. ...+..-|. ..--.+-...+...+.+.....-+ ..+ ..+..+-..|..|...- -.+.|.
T Consensus 82 -~~----~~~~i~~yr-~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~ 155 (260)
T 1o9d_A 82 -EE----HVNSIREYR-SKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTL 155 (260)
T ss_dssp -HH----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred -HH----HHHHHHHHH-HHHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHHHH
Confidence 11 111111111 111122334445555555443211 122 22333344455554321 135788
Q ss_pred HHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHH
Q 005139 495 SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKI 546 (712)
Q Consensus 495 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 546 (712)
..|+.|..+....+ ...+|.......+.+..|+. +++.++|..+.++|+.-
T Consensus 156 ~aY~~A~~iA~~~L-~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 207 (260)
T 1o9d_A 156 TAYKAAQDIATTEL-APTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 207 (260)
T ss_dssp HHHHHHHHHHHHHS-CTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 89999999987554 44455555555555555554 79999999888877654
No 271
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=81.30 E-value=34 Score=31.60 Aligned_cols=58 Identities=16% Similarity=0.022 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHH
Q 005139 490 LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKIYN 548 (712)
Q Consensus 490 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~ 548 (712)
.+.|...|++|+.+....+ ...+|.......+.+..|+. .++.++|..+.++|+.-.-
T Consensus 146 ~e~a~~aY~~A~~iA~~~L-~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai 204 (234)
T 2br9_A 146 AENSLVAYKAASDIAMTEL-PPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAI 204 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHS-CTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccC-CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3578889999999987654 44455555555555555554 8999999998888876543
No 272
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=80.73 E-value=40 Score=36.66 Aligned_cols=84 Identities=7% Similarity=-0.026 Sum_probs=43.8
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHhcCCCC----------hhhHHHHHHHHHHHHHccc-hhhhCCCChhHHHHHHHHHHHH
Q 005139 611 VQRYSINEAVELFEEARSILEQECGPYH----------PDTLGVYSNLAGTYDAIGR-EEKLGTANPDVDDEKRRLAELL 679 (712)
Q Consensus 611 ~~~g~~~~A~~~~~~al~~~~~~~~~~~----------p~~~~~~~~La~~~~~~g~-~~~l~~~~p~~~~~~~~la~~~ 679 (712)
...|+++.++.+..+++.-.-....... .+....-..+...|...+. ...+....-+....+..+..++
T Consensus 467 ~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~~t~~lLl~l~~f~ 546 (661)
T 2qx5_A 467 QLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIHVKNKEICMLLLNISSIR 546 (661)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhccHHHHHHHHHHHHHHHHH
Confidence 3346777777777777654333221001 1233344455555544322 1122111223344456666666
Q ss_pred --HHhccHHHHHHHHHHH
Q 005139 680 --KEAGRVRSRKAQSLET 695 (712)
Q Consensus 680 --~~~g~~~~A~~~~l~~ 695 (712)
...|+|+.|. +.+++
T Consensus 547 ~~~~~g~~~~AL-~~i~~ 563 (661)
T 2qx5_A 547 ELYFNKQWQETL-SQMEL 563 (661)
T ss_dssp HHHHTTCHHHHH-HHHHH
T ss_pred HHHHcCCHHHHH-HHHHh
Confidence 7799999999 66665
No 273
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=77.99 E-value=15 Score=34.72 Aligned_cols=101 Identities=15% Similarity=0.155 Sum_probs=69.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC-------------
Q 005139 441 TYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKP------------- 507 (712)
Q Consensus 441 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------------- 507 (712)
..+..|..++|+......++. .|..+.....|..+++-.|+++.|..-++-+.++....
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~--------~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH
Confidence 355789999999999988887 88889999999999999999999998887776653221
Q ss_pred -------CCCC-------CChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhC
Q 005139 508 -------VPGV-------PPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDA 550 (712)
Q Consensus 508 -------~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 550 (712)
+.+. .++. ......-+......|+.++|...-.+|++..+..
T Consensus 78 E~~R~~vfaG~~~P~~~g~~~~-w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 78 AQARKDFAQGAATAKVLGENEE-LTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp HHHHHHHTTSCCCEECCCSCHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHcCCCCCCCCCCCHH-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 0000 0111 1122223344455677777777777777765544
No 274
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=76.23 E-value=51 Score=30.82 Aligned_cols=57 Identities=16% Similarity=0.039 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHH
Q 005139 490 LRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKIY 547 (712)
Q Consensus 490 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~ 547 (712)
.+.|...|++|..+....+ +..+|.......+.+..|+. +++.++|..+.++|+.-.
T Consensus 172 ~e~a~~aY~~A~~iA~~~L-~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~A 229 (261)
T 3ubw_A 172 AENSLVAYKAASDIAMTEL-PPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDA 229 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHS-CTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhC-CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3678899999999886655 34455545555555655554 799999999888877654
No 275
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=73.98 E-value=17 Score=27.53 Aligned_cols=47 Identities=21% Similarity=0.051 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 005139 221 GPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCL 268 (712)
Q Consensus 221 ~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 268 (712)
+..+...|...-..|+ |++|+.+|..|++.+-......+++..-..+
T Consensus 16 A~~lv~~Ave~D~~g~-y~eAl~lY~~Aie~ll~alk~e~d~~~k~~l 62 (86)
T 4a5x_A 16 AATVLKRAVELDSESR-YPQALVCYQEGIDLLLQVLKGTKDNTKRCNL 62 (86)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 4566777877788886 9999999999999987665555555443333
No 276
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=71.51 E-value=67 Score=30.08 Aligned_cols=183 Identities=14% Similarity=0.145 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH---HhcCCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhCC
Q 005139 351 ETCRYLAEAHVQALQFSEAQKFCQMALDIH---KDNGSPASLEEAADRRLMGLICET-KGDHEAALEHLVLASMTMIAND 426 (712)
Q Consensus 351 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~~~a~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~ 426 (712)
.-+..++.+..+.++|++...+..++.... ... ... -.+.|..+|-. .|....+...+..... -....
T Consensus 29 e~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eL----t~E---ERnLLSvAyKNvIg~rR~swRiissieq-ke~~k 100 (260)
T 2npm_A 29 ESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEEL----TVE---ERNLLSVAYKNAVGSRRSSWRIISSVEQ-KEHSR 100 (260)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CC----CHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCC----CHH---HHHHHHHHHHHHhccchHHHHHHHHHHH-Hhhcc
Confidence 345567888888999999999999888743 211 111 12333333321 1222222222221111 01111
Q ss_pred CChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--CCH-HHHHHHHHHHHHHHHcC----------CHHHH
Q 005139 427 QDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGE--NHP-AVASVFVRLADMYNRTG----------KLRES 493 (712)
Q Consensus 427 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~-~~~~~~~~la~~~~~~g----------~~~~A 493 (712)
..... ..+..-|. ..=-.+-...+...+.+.....-+ ..+ ..+..+-..|..|...- -.+.|
T Consensus 101 ~~~~~----~~~i~~yr-~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a 175 (260)
T 2npm_A 101 NAEDA----SKMCGKYR-SKVEAELTDICNDILTMLDKHLIPTATSPDSKVFYFKMKGDYHRYISEFSTGDSKQSSAEDA 175 (260)
T ss_dssp TCHHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CcHHH----HHHHHHHH-HHHHHHHHHHHhhHHHHHHHhhccCCCchHHHHHHHHHhccHHHHHHHhcCchHHHHHHHHH
Confidence 11111 01111111 111122333445555554443211 112 22333334455554321 23578
Q ss_pred HHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHH
Q 005139 494 KSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYES-MNELEQAIKLLQKALKIYN 548 (712)
Q Consensus 494 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~ 548 (712)
...|++|..+. ..+ ...+|.......+.+..|+. +++.++|..+.++|+.-.-
T Consensus 176 ~~aY~~A~~iA-~~L-~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai 229 (260)
T 2npm_A 176 LKAYKDATVVA-KDL-EPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMAI 229 (260)
T ss_dssp HHHHHHHHHHH-TTS-CTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HhC-CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 88999999999 544 44555555555556665554 8999999999888876544
No 277
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=70.22 E-value=39 Score=31.68 Aligned_cols=74 Identities=18% Similarity=0.123 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHH-HhCCHHHHHHH
Q 005139 306 AKFAGHMQLGDTYAMLGQ----------LENSLMCYTTGLEVQKQVL--GETDPRVGETCRYLAEAHV-QALQFSEAQKF 372 (712)
Q Consensus 306 ~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~ 372 (712)
..+..+-..|..|..... .+.|...|+.|.++....+ .+.+|-......+.+..|+ .+++.++|..+
T Consensus 140 skVFY~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~l 219 (268)
T 3efz_A 140 ARAFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKF 219 (268)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred hHHHHHhccchHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344456666877765433 3678899999999998777 7788877777777777777 58999999999
Q ss_pred HHHHHHH
Q 005139 373 CQMALDI 379 (712)
Q Consensus 373 ~~~al~~ 379 (712)
.++|++-
T Consensus 220 Ak~AFde 226 (268)
T 3efz_A 220 ANRAIQA 226 (268)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9998876
No 278
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=69.90 E-value=17 Score=31.47 Aligned_cols=83 Identities=12% Similarity=0.121 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCC
Q 005139 494 KSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGN 573 (712)
Q Consensus 494 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 573 (712)
..++++++..+...-.-.+++....+|..++... ++ +..+|...... +.-...+..|...|..+...|+
T Consensus 43 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---~~---p~~if~~L~~~-----~IG~~~AlfY~~wA~~lE~~~~ 111 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC---NE---PLDMYSYLHNQ-----GIGVSLAQFYISWAEEYEAREN 111 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---SC---HHHHHHHHHHT-----TSSTTBHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---CC---HHHHHHHHHHC-----CcchhhHHHHHHHHHHHHHcCC
Confidence 4567777777655332345667777887777653 33 44555443322 4444556788889999999999
Q ss_pred HHHHHHHHHHHHHH
Q 005139 574 YSDSYDSFKNAISK 587 (712)
Q Consensus 574 ~~~A~~~~~~al~~ 587 (712)
+.+|..+|+.+++.
T Consensus 112 ~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 112 FRKADAIFQEGIQQ 125 (164)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999884
No 279
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=69.28 E-value=35 Score=25.92 Aligned_cols=41 Identities=17% Similarity=0.189 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCC
Q 005139 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPS 261 (712)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~ 261 (712)
.+..+-..+..+...|. |++||++.++|...+.........
T Consensus 14 ~AH~~~RrAe~ll~~gk-ydeAIech~kAa~yL~eAmkltqs 54 (97)
T 2crb_A 14 LAHQQSRRADRLLAAGK-YEEAISCHRKATTYLSEAMKLTES 54 (97)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred hhhHhhhHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 46677888999999997 999999999999887665444333
No 280
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=69.11 E-value=22 Score=26.97 Aligned_cols=40 Identities=10% Similarity=0.008 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Q 005139 597 AFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP 636 (712)
Q Consensus 597 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 636 (712)
-+.+..+...+..+...|+|++|+++.++|...+......
T Consensus 12 Ln~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eAmkl 51 (97)
T 2crb_A 12 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKL 51 (97)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677888999999999999999999999887776553
No 281
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=68.96 E-value=46 Score=34.37 Aligned_cols=153 Identities=14% Similarity=0.098 Sum_probs=87.1
Q ss_pred cHHHHHHHHHHHHHHHHhCCC----CC-----CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---hCCCCChHH
Q 005139 532 ELEQAIKLLQKALKIYNDAPG----QQ-----STVAGIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA---IGERKSAFF 599 (712)
Q Consensus 532 ~~~~A~~~~~~al~~~~~~~~----~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~ 599 (712)
..+++...+.++...+..... .. .....+...+-.+|++.++..-+...++..-.. .- ...-.....
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~-~~~p~~~~~p~~q~ 219 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPK-SMLAHFNEYQLDQQ 219 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHH-CCCSCGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC-CCCcChhhCCccce
Confidence 445666666666665443211 11 122233456678999999999998887544331 11 111112345
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HHHhcCC--CChhhHHHHHHHHHHHHHccc---hhhhCC-CChhHHHHH
Q 005139 600 GVALNQMGLACVQRYSINEAVELFEEARSI-LEQECGP--YHPDTLGVYSNLAGTYDAIGR---EEKLGT-ANPDVDDEK 672 (712)
Q Consensus 600 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~--~~p~~~~~~~~La~~~~~~g~---~~~l~~-~~p~~~~~~ 672 (712)
+..++.+|.++...++|.+|.+.+..|+.. +....+. .......++..|.-+-.-+|+ ...+.. ..|.....+
T Consensus 220 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~P~~~ll~k~~~~~L~~~y 299 (455)
T 3t5v_B 220 IEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKMVKWGPLRPFLSQETIDNW 299 (455)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCCBCHHHHGGGSCHHHHHHH
T ss_pred EeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCCCCHHHHcccchHHHHHHH
Confidence 678899999999999999999999999987 4321100 012233455555555566787 222211 124444445
Q ss_pred HHHHHHHHHhccHH
Q 005139 673 RRLAELLKEAGRVR 686 (712)
Q Consensus 673 ~~la~~~~~~g~~~ 686 (712)
..|..+ .+.|+..
T Consensus 300 ~~L~~A-Vr~Gdl~ 312 (455)
T 3t5v_B 300 SVLYKH-VRYGNIQ 312 (455)
T ss_dssp HHHHHH-HHHTCHH
T ss_pred HHHHHH-HHhCCHH
Confidence 555544 3567654
No 282
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=68.71 E-value=92 Score=30.51 Aligned_cols=70 Identities=14% Similarity=0.114 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 005139 560 IEAQMGVMYYMLG--NYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (712)
Q Consensus 560 ~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 632 (712)
++.+||.+-...- ....++.+|.+|+...+......+. .-|..+|..+.+.+++.+|+.++-.|-...+.
T Consensus 257 ALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~Hv---YPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~ 328 (472)
T 3re2_A 257 AIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHI---YPYTYLGGYYYRKKKYYEAIASWVDAGYVAGK 328 (472)
T ss_dssp HHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred hhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCc---cchhhhhhhhhhcchHHHHHHHHHHHHHHHHH
Confidence 4445555443321 2223889999999999988777654 45667888999999999999999998876543
No 283
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=68.18 E-value=75 Score=29.29 Aligned_cols=56 Identities=14% Similarity=0.133 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Q 005139 449 DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR-TGKLRESKSYCENALRIY 504 (712)
Q Consensus 449 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~ 504 (712)
+.|...|++|++++.....+.||.......+.+..|+. .++.++|..+.++|+.-.
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~A 203 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDA 203 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 57889999999999887788889877777777777766 799999998888777653
No 284
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=67.64 E-value=81 Score=29.48 Aligned_cols=56 Identities=14% Similarity=0.133 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Q 005139 449 DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR-TGKLRESKSYCENALRIY 504 (712)
Q Consensus 449 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~ 504 (712)
+.|...|++|.+++.....+.+|-......+.+..|+. +++.++|..+.++|+.-.
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~A 229 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDA 229 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 67889999999999888888899877777777777766 799999988877776653
No 285
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=66.23 E-value=87 Score=29.34 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Q 005139 449 DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR-TGKLRESKSYCENALRI 503 (712)
Q Consensus 449 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 503 (712)
+.|...|+.|.+++.....+.||.......+.+..|+. +++.++|..+.++|+.-
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 207 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 207 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 57889999999999877788899877777777777766 79999998887777654
No 286
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=65.31 E-value=88 Score=29.04 Aligned_cols=56 Identities=14% Similarity=0.160 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Q 005139 449 DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR-TGKLRESKSYCENALRIY 504 (712)
Q Consensus 449 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~ 504 (712)
+.|...|++|.+++.....+.||.......+.+..|+. +++.++|..+.++|+.-.
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~A 204 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDA 204 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 67889999999999888888899877777777777665 799999988877776653
No 287
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=64.36 E-value=1.2e+02 Score=30.31 Aligned_cols=54 Identities=7% Similarity=0.202 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 005139 576 DSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (712)
Q Consensus 576 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 632 (712)
.++.+|.+|+...+......+. .-|..+|..+.+.+++.+|+..+-.|-...+.
T Consensus 297 ~~~~L~~~AI~sa~~~Y~n~Hv---YPYtYlgGy~yR~~~~reAl~~WA~Aa~Vi~~ 350 (550)
T 3u84_A 297 DPLTLYHKGIASAKTYYRDEHI---YPYMYLAGYHCRNRNVREALQAWADTATVIQD 350 (550)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHhccCCc---cceeecchhhhhcchHHHHHHHHHHHHHHHHH
Confidence 3888999999999988777664 45677888999999999999999998876443
No 288
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=64.26 E-value=65 Score=29.39 Aligned_cols=84 Identities=5% Similarity=-0.010 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcC
Q 005139 493 SKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG 572 (712)
Q Consensus 493 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g 572 (712)
=..++++++..+...-.-.+++....+|..++.. . +.+..+|.-.... +.....+..|...|..+...|
T Consensus 96 L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~---~---~~p~~if~~L~~~-----~IG~~~AlfYe~wA~~lE~~g 164 (223)
T 4aez_C 96 LVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY---I---DEPVELFSFLAHH-----HIGQESSIFYEEYANYFESRG 164 (223)
T ss_dssp HHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT---C---SCHHHHHHHHHHT-----TCSTTBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc---c---CCHHHHHHHHHHC-----CcchhHHHHHHHHHHHHHHcC
Confidence 3568888888876643334566777777777763 2 3445555544322 344455678888999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 005139 573 NYSDSYDSFKNAISK 587 (712)
Q Consensus 573 ~~~~A~~~~~~al~~ 587 (712)
++.+|..+|+.+++.
T Consensus 165 ~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 165 LFQKADEVYQKGKRM 179 (223)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999999884
No 289
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=64.24 E-value=17 Score=31.03 Aligned_cols=84 Identities=6% Similarity=-0.015 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcC
Q 005139 493 SKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLG 572 (712)
Q Consensus 493 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g 572 (712)
=..++++++..+...-.-.+++....+|...+... .++..+|.-.... +.....+..|...|..+...|
T Consensus 47 l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~dp~~if~~L~~~-----~IG~~~AlfYe~wA~~lE~~g 115 (152)
T 4a1g_A 47 LITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN------SDLHQFFEFLYNH-----GIGTLSSPLYIAWAGHLEAQG 115 (152)
T ss_dssp HHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB------SCHHHHHHHHHTT-----TTTTTBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc------CCHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHHHcC
Confidence 34566777777655322344666777777776543 2255555544321 334455678888999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 005139 573 NYSDSYDSFKNAISK 587 (712)
Q Consensus 573 ~~~~A~~~~~~al~~ 587 (712)
++.+|...|+.+++.
T Consensus 116 ~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 116 ELQHASAVLQRGIQN 130 (152)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999999874
No 290
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=63.88 E-value=35 Score=26.23 Aligned_cols=48 Identities=21% Similarity=0.064 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 005139 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCL 268 (712)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 268 (712)
.+..+...|...-..|+ |++|+.+|..|++.+.......+++..-..+
T Consensus 14 ~Ai~lv~~Ave~D~~g~-y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l 61 (93)
T 1wfd_A 14 AAVAVLKRAVELDAESR-YQQALVCYQEGIDMLLQVLKGTKESSKRCVL 61 (93)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44567778888888886 9999999999999987765444555444333
No 291
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=63.76 E-value=1.6e+02 Score=31.66 Aligned_cols=121 Identities=12% Similarity=0.065 Sum_probs=69.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 005139 564 MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLG 643 (712)
Q Consensus 564 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~ 643 (712)
++.......+.+.|...+...... ..............++......+...++..++.++... ..+.....
T Consensus 220 ~~~~rlar~d~~~A~~~~~~~~~~----~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~e 289 (618)
T 1qsa_A 220 VAFASVARQDAENARLMIPSLAQA----QQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR------SQSTSLIE 289 (618)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT------CCCHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHhhhhc----cCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc------CCChHHHH
Confidence 344444555788888887765432 11122222334444554455555355666666654322 11222222
Q ss_pred HHHHHHHHHHHccc-------hhhhCCCChhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 005139 644 VYSNLAGTYDAIGR-------EEKLGTANPDVDDEKRRLAELLKEAGRVRSRKAQSLETLLD 698 (712)
Q Consensus 644 ~~~~La~~~~~~g~-------~~~l~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~l~~~l~ 698 (712)
...... ...|+ ...+...........+-+|.++..+|+.++|. ..|+.+..
T Consensus 290 --~~~r~A-lr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~-~~~~~~a~ 347 (618)
T 1qsa_A 290 --RRVRMA-LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAK-EILHQLMQ 347 (618)
T ss_dssp --HHHHHH-HHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHH-HHHHHHHT
T ss_pred --HHHHHH-HHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHH-HHHHHHhc
Confidence 222333 34466 44454444456778899999999999999999 88888764
No 292
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=63.32 E-value=1.3e+02 Score=30.22 Aligned_cols=54 Identities=7% Similarity=0.202 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 005139 576 DSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQ 632 (712)
Q Consensus 576 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 632 (712)
.++.+|++|+...+......+. .-|..+|-.+.+.+++.+|+.++-.|-.....
T Consensus 282 ~~~~Lf~~AI~~ar~~Y~~~hv---YPYtYlgG~~~R~~~~~eAl~~wa~aa~Vi~~ 335 (489)
T 4gq4_A 282 DPLTLYHKGIASAKTYYRDEHI---YPYMYLAGYHCRNRNVREALQAWADTATVIQD 335 (489)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCS---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhcccCcc---cceeecchHHHHhhhHHHHHHHhhhhhhhhhh
Confidence 4678999999999988877664 46777899999999999999999999887544
No 293
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=62.39 E-value=94 Score=28.38 Aligned_cols=182 Identities=14% Similarity=0.053 Sum_probs=95.4
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhCCCChhHHH
Q 005139 355 YLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICET-KGDHEAALEHLVLASMTMIANDQDAEVAS 433 (712)
Q Consensus 355 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 433 (712)
.+|.+..+.++|++...+..++...+......-+.. -.+.|..+|-. .|....+...+.... ........
T Consensus 11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~~~eLt~E---ERnLLSvAYKNvig~rR~swRiissiE---qkek~~~~--- 81 (227)
T 2o8p_A 11 YRAQVFEWGGCFDKMFEALKSLIYLSEFENSEFDDE---ERHLLTLCIKHKISDYRTMTSQVLQEQ---TKQLNNDE--- 81 (227)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHSCSCHH---
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhhccCCCCCHH---HHHHHHHHHHHhhcccHHHHHHHHHHH---HHHcCCHH---
Confidence 678888899999999999999887311111111111 12233333321 122222222222111 11111111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHhcCC
Q 005139 434 VDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYN-----RTGKLRESKSYCENALRIYEKPV 508 (712)
Q Consensus 434 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~~~~~ 508 (712)
...+..-|.. .--.+-.......+.+.....-+.....+..+-..|..|. ..|+.+.|...|+.|..+....+
T Consensus 82 -~~~~i~~yr~-kie~EL~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~~L 159 (227)
T 2o8p_A 82 -LVKICSEYVF-SLRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHP 159 (227)
T ss_dssp -HHHHHHHHHH-HHHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCG
T ss_pred -HHHHHHHHHH-HHHHHHHHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHHhhC
Confidence 1111121211 1112334456667777666554432233344444555554 35678999999999999987654
Q ss_pred CCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Q 005139 509 PGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIY 547 (712)
Q Consensus 509 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 547 (712)
++.++-....+++.-...|.-+++.++|..+.++|+.+.
T Consensus 160 ~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 160 DKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp GGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 333333334444443444556899999999999998754
No 294
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=62.26 E-value=88 Score=28.00 Aligned_cols=87 Identities=6% Similarity=-0.032 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHcCCH
Q 005139 495 SYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQSTVAGIEAQMGVMYYMLGNY 574 (712)
Q Consensus 495 ~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 574 (712)
.++++++..+...-.-.+++....+|...+..+ ..+...++..+|.-.... +.....+..|...|..+...|++
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~-----~IG~~~AlfYe~wA~~lE~~g~~ 131 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNK-----GIGTKLSLFYEEFSKLLENAQFF 131 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHH-----TSSTTBHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHC-----CCcHHHHHHHHHHHHHHHHcCCH
Confidence 688999988776433355677788888888765 233356777777765543 33444567888899999999999
Q ss_pred HHHHHHHHHHHHH
Q 005139 575 SDSYDSFKNAISK 587 (712)
Q Consensus 575 ~~A~~~~~~al~~ 587 (712)
.+|...|+.+++.
T Consensus 132 ~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 132 LEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 9999999999874
No 295
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=61.39 E-value=32 Score=25.89 Aligned_cols=48 Identities=10% Similarity=0.030 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 005139 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPSLELVMCL 268 (712)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 268 (712)
.+..+...|...-..|+ |++|+.+|..|++.+.......+++..-..+
T Consensus 12 ~A~~l~~~Av~~D~~g~-y~eAl~~Y~~aie~l~~a~k~e~~~~~k~~l 59 (85)
T 2v6x_A 12 KGIELVQKAIDLDTATQ-YEEAYTAYYNGLDYLMLALKYEKNPKSKDLI 59 (85)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 45567778877777775 9999999999999876644333444433333
No 296
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=59.68 E-value=54 Score=24.74 Aligned_cols=32 Identities=13% Similarity=0.088 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 005139 603 LNQMGLACVQRYSINEAVELFEEARSILEQEC 634 (712)
Q Consensus 603 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 634 (712)
+...|.-+-..|++++|+.+|..+++.+...+
T Consensus 19 lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~al 50 (86)
T 4a5x_A 19 VLKRAVELDSESRYPQALVCYQEGIDLLLQVL 50 (86)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 33444445678999999999999999876654
No 297
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=59.26 E-value=24 Score=26.53 Aligned_cols=35 Identities=11% Similarity=0.046 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Q 005139 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIG 255 (712)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~ 255 (712)
.+..+...|...-..|+ |++|+.+|.++++.+...
T Consensus 18 ~Ai~lv~~Ave~D~~g~-y~eAl~lY~~aie~l~~a 52 (83)
T 2w2u_A 18 MARKYAINAVKADKEGN-AEEAITNYKKAIEVLAQL 52 (83)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHH
Confidence 34567777877778886 999999999999987654
No 298
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=59.03 E-value=25 Score=26.35 Aligned_cols=36 Identities=11% Similarity=0.004 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhc
Q 005139 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGA 256 (712)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~ 256 (712)
.+..+...|...-..|+ |++|+.+|.++++.+....
T Consensus 10 ~Ai~lv~~Ave~D~~g~-y~eAl~lY~~aie~l~~~l 45 (83)
T 2v6y_A 10 MARKYAILAVKADKEGK-VEDAITYYKKAIEVLSQII 45 (83)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHH
Confidence 34567777877888886 9999999999999886543
No 299
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=58.54 E-value=2.1e+02 Score=31.11 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHH--HHcccHHHHHHHHHH
Q 005139 516 IASGLTDVSSIY--ESMNELEQAIKLLQK 542 (712)
Q Consensus 516 ~~~~~~~la~~~--~~~g~~~~A~~~~~~ 542 (712)
....+..+..++ +..|+|+.|+..+++
T Consensus 535 t~~lLl~l~~f~~~~~~g~~~~AL~~i~~ 563 (661)
T 2qx5_A 535 ICMLLLNISSIRELYFNKQWQETLSQMEL 563 (661)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 344555666665 778999999887776
No 300
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=58.37 E-value=24 Score=26.06 Aligned_cols=39 Identities=15% Similarity=-0.009 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCCC
Q 005139 222 PLLLKQARELISSGDNPQKALELALRAAKSFEIGANGKPS 261 (712)
Q Consensus 222 ~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~~~ 261 (712)
.-...+|+.+...|+ |+.|+.+|+.+++.+.+....-.+
T Consensus 13 ~e~~k~ARe~Al~Gn-Ydta~~yY~g~~~qI~k~l~~~~d 51 (78)
T 2rpa_A 13 VENVKLAREYALLGN-YDSAMVYYQGVLDQMNKYLYSVKD 51 (78)
T ss_dssp HHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345788999999996 999999999999988776543333
No 301
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=58.33 E-value=36 Score=35.14 Aligned_cols=100 Identities=12% Similarity=0.030 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc--CCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-HHhCC
Q 005139 475 SVFVRLADMYNRTGKLRESKSYCENALRIYEK--PVPGVPPEEIASGLTDVSSIYESMNELEQAIKLLQKALKI-YNDAP 551 (712)
Q Consensus 475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~ 551 (712)
.....|-.+|++.++..-+...+...-.. .. .+..-.....+..++.+|.++...++|.+|.+.+..|+.. ++...
T Consensus 177 ~l~n~L~kiYFkl~~~~lckni~k~i~~~-~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~ 255 (455)
T 3t5v_B 177 YLVNKLNNIYFRIESPQLCSNIFKNFQPK-SMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPL 255 (455)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHTHHHH-CCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccC-CCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccc
Confidence 34456678899999999998888554332 11 0111223457888999999999999999999999999999 77542
Q ss_pred CC---CCcHHHHHHHHHHHHHHcCCHH
Q 005139 552 GQ---QSTVAGIEAQMGVMYYMLGNYS 575 (712)
Q Consensus 552 ~~---~~~~~~~~~~la~~~~~~g~~~ 575 (712)
+. ......++..+.-+-.-+|++.
T Consensus 256 ~~~~~~~n~~~ILkyLIpv~LLlG~~P 282 (455)
T 3t5v_B 256 TNQAITRNGTRILNYMIPTGLILGKMV 282 (455)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCCB
T ss_pred cchhhhhHHHHHHHHHHHHHHHcCCCC
Confidence 21 1122234444444444567653
No 302
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=57.90 E-value=53 Score=26.51 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=21.6
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 005139 608 LACVQRYSINEAVELFEEARSILEQEC 634 (712)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~al~~~~~~~ 634 (712)
.-.-..|+|++|+.+|..+++++...+
T Consensus 26 ve~D~ag~y~eAl~lY~~Aie~l~~al 52 (117)
T 2cpt_A 26 AQEDKAGNYEEALQLYQHAVQYFLHVV 52 (117)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHHH
Confidence 344567999999999999999876654
No 303
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=57.84 E-value=41 Score=27.15 Aligned_cols=49 Identities=16% Similarity=0.055 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHH
Q 005139 220 LGPLLLKQARELISSGDNPQKALELALRAAKSFEIGANGK-PSLELVMCLH 269 (712)
Q Consensus 220 ~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~~~~~~~-~~~~~~~~l~ 269 (712)
.+..++..|...-..|+ |++|+.+|..|++++....... ..+..-..+.
T Consensus 17 kAi~lv~~Ave~D~ag~-y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr 66 (117)
T 2cpt_A 17 KAIDLASKAAQEDKAGN-YEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIR 66 (117)
T ss_dssp HHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 45567777877777775 9999999999999887654333 3444333333
No 304
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=54.26 E-value=1.3e+02 Score=27.60 Aligned_cols=56 Identities=18% Similarity=0.186 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Q 005139 448 YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR-TGKLRESKSYCENALRI 503 (712)
Q Consensus 448 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 503 (712)
.+.|...|++|.+++.....+.||-......+.+..|+. +++.++|..+.++|+.-
T Consensus 149 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~ 205 (236)
T 3iqu_A 149 IDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDE 205 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 367889999999999888888889877777777777664 69999998887777654
No 305
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=54.15 E-value=1e+02 Score=35.37 Aligned_cols=68 Identities=12% Similarity=0.085 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHH-----------------HhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHH
Q 005139 519 GLTDVSSIYESMNELEQAIKLLQKALKIY-----------------NDAPGQQSTVAGIEAQMGVMYYMLGNYSDSYDSF 581 (712)
Q Consensus 519 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-----------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 581 (712)
.-+.+|.+|...|++++|..+|++|-.-. ... .........|..+..++...+-++-++.+.
T Consensus 842 ~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~-e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA 920 (950)
T 4gq2_M 842 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY-HHQNLLSCYYLHLSKKLFEESAYIDALEFS 920 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHT-TTCSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcc-cccchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 34789999999999999999999864211 111 111223345667777788888888888888
Q ss_pred HHHHHH
Q 005139 582 KNAISK 587 (712)
Q Consensus 582 ~~al~~ 587 (712)
+.|+..
T Consensus 921 ~lAI~~ 926 (950)
T 4gq2_M 921 LLADAS 926 (950)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 888764
No 306
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=53.43 E-value=61 Score=24.23 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=23.0
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 005139 606 MGLACVQRYSINEAVELFEEARSILEQEC 634 (712)
Q Consensus 606 lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 634 (712)
.|.-+-..|++++|+.+|.++++.+...+
T Consensus 25 ~Ave~D~~g~y~eAl~lY~~aie~l~~al 53 (83)
T 2w2u_A 25 NAVKADKEGNAEEAITNYKKAIEVLAQLV 53 (83)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 34445678999999999999999877653
No 307
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=52.40 E-value=1.4e+02 Score=27.21 Aligned_cols=85 Identities=11% Similarity=0.018 Sum_probs=54.5
Q ss_pred HHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHh
Q 005139 284 AIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQA 363 (712)
Q Consensus 284 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 363 (712)
-..++++++........-.+....+.+|..++.. .+.+..+|.-+... .-....+..|...|..+...
T Consensus 96 L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~------~~~p~~if~~L~~~------~IG~~~AlfYe~wA~~lE~~ 163 (223)
T 4aez_C 96 LVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNY------IDEPVELFSFLAHH------HIGQESSIFYEEYANYFESR 163 (223)
T ss_dssp HHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT------CSCHHHHHHHHHHT------TCSTTBHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHc------cCCHHHHHHHHHHC------CcchhHHHHHHHHHHHHHHc
Confidence 4567777777654332222223344455555542 23555666654433 11245677888899999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 005139 364 LQFSEAQKFCQMALDIH 380 (712)
Q Consensus 364 g~~~~A~~~~~~al~~~ 380 (712)
|++.+|..+|+.++...
T Consensus 164 g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 164 GLFQKADEVYQKGKRMK 180 (223)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 99999999999998754
No 308
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=52.15 E-value=1.2e+02 Score=30.43 Aligned_cols=32 Identities=19% Similarity=0.192 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 005139 600 GVALNQMGLACVQRYSINEAVELFEEARSILE 631 (712)
Q Consensus 600 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 631 (712)
+.+++..|..+...+++.+|+..++.|.+.++
T Consensus 253 A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~ 284 (376)
T 3r9m_A 253 AYAYCYHGETLLASDKCGEAIRSLQEAEKLYA 284 (376)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 45666677777778888888888888877654
No 309
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=51.76 E-value=69 Score=23.92 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=22.5
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 005139 607 GLACVQRYSINEAVELFEEARSILEQEC 634 (712)
Q Consensus 607 g~~~~~~g~~~~A~~~~~~al~~~~~~~ 634 (712)
|.-+-..|++++|+.+|.++++.+...+
T Consensus 18 Ave~D~~g~y~eAl~lY~~aie~l~~~l 45 (83)
T 2v6y_A 18 AVKADKEGKVEDAITYYKKAIEVLSQII 45 (83)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 3444578999999999999999887654
No 310
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=51.13 E-value=1.3e+02 Score=28.26 Aligned_cols=95 Identities=9% Similarity=0.046 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHcCC----------HhHHHHHHHHhhchhhhhh--cccchHHHH
Q 005139 242 LELALRAAKSFEIGANGK-PSLELVMCLHVIAAIYCSLGQ----------YNEAIPVLEQSIEIPVIEE--GQEHALAKF 308 (712)
Q Consensus 242 ~~~~~~Al~~~~~~~~~~-~~~~~~~~l~~la~~~~~~g~----------~~~A~~~~~~al~~~~~~~--~~~~~~~~~ 308 (712)
...+...+.+.....-+. ..+..+..+...|..|.-+-. .+.|...|+.|.++..... .|.+|. .+
T Consensus 118 ~~iC~diL~llD~~Lip~a~~~skVFY~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq~A~eiA~~~L~~~pThPi-RL 196 (268)
T 3efz_A 118 LLESEDVIRIIDDNLLMYSEEGARAFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPSDPL-YL 196 (268)
T ss_dssp HHHHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGCHH-HH
T ss_pred HHHHHHHHHHHHHhhcccCCchhHHHHHhccchHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChH-HH
Confidence 345666777776643221 223334445555777765432 3678889999999887667 788886 34
Q ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Q 005139 309 AGHMQLGDTYA-MLGQLENSLMCYTTGLEV 337 (712)
Q Consensus 309 ~~~~~lg~~~~-~~g~~~~A~~~~~~al~~ 337 (712)
....+.+..|+ .+++.++|....++|+.-
T Consensus 197 GLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 197 ATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44555555555 579999999999998776
No 311
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=50.37 E-value=76 Score=24.31 Aligned_cols=29 Identities=14% Similarity=0.103 Sum_probs=22.9
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 005139 606 MGLACVQRYSINEAVELFEEARSILEQEC 634 (712)
Q Consensus 606 lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 634 (712)
.|.-+-..|++++|+.+|..+++.+...+
T Consensus 21 ~Ave~D~~g~y~eAl~~Y~~Aie~l~~al 49 (93)
T 1wfd_A 21 RAVELDAESRYQQALVCYQEGIDMLLQVL 49 (93)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 34444567999999999999999877654
No 312
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=50.02 E-value=69 Score=27.62 Aligned_cols=83 Identities=11% Similarity=0.089 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHHc
Q 005139 242 LELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAML 321 (712)
Q Consensus 242 ~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 321 (712)
..++++++..+.....-.+++....++...+... +.+..+|...... ..|.... ..|...|..+...
T Consensus 43 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~~p~~if~~L~~~---~IG~~~A----lfY~~wA~~lE~~ 109 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC------NEPLDMYSYLHNQ---GIGVSLA----QFYISWAEEYEAR 109 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC------SCHHHHHHHHHHT---TSSTTBH----HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc------CCHHHHHHHHHHC---CcchhhH----HHHHHHHHHHHHc
Confidence 5567777777655443455677777776666552 3456666654432 2233333 3488899999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 005139 322 GQLENSLMCYTTGLEV 337 (712)
Q Consensus 322 g~~~~A~~~~~~al~~ 337 (712)
|++.+|..+|+.+++.
T Consensus 110 ~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 110 ENFRKADAIFQEGIQQ 125 (164)
T ss_dssp TCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHc
Confidence 9999999999999886
No 313
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=49.85 E-value=64 Score=27.42 Aligned_cols=85 Identities=11% Similarity=0.041 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHhHHHHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHH
Q 005139 240 KALELALRAAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYNEAIPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYA 319 (712)
Q Consensus 240 ~A~~~~~~Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~ 319 (712)
.-..++++++..+.....=.+++.....+...+.. .+++..+|....... .|.... ..|...|..+.
T Consensus 46 ~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~------~~dp~~if~~L~~~~---IG~~~A----lfYe~wA~~lE 112 (152)
T 4a1g_A 46 YLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEY------NSDLHQFFEFLYNHG---IGTLSS----PLYIAWAGHLE 112 (152)
T ss_dssp HHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTT------BSCHHHHHHHHHTTT---TTTTBH----HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHh------cCCHHHHHHHHHHCC---CcHHHH----HHHHHHHHHHH
Confidence 34566777777775443344556666666555543 244777777655432 233333 34888999999
Q ss_pred HcCCHHHHHHHHHHHHHH
Q 005139 320 MLGQLENSLMCYTTGLEV 337 (712)
Q Consensus 320 ~~g~~~~A~~~~~~al~~ 337 (712)
..|++.+|...|+.+++.
T Consensus 113 ~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 113 AQGELQHASAVLQRGIQN 130 (152)
T ss_dssp HTTCHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHc
Confidence 999999999999999886
No 314
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=49.06 E-value=81 Score=23.58 Aligned_cols=28 Identities=11% Similarity=0.007 Sum_probs=21.9
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 005139 607 GLACVQRYSINEAVELFEEARSILEQEC 634 (712)
Q Consensus 607 g~~~~~~g~~~~A~~~~~~al~~~~~~~ 634 (712)
|.-.-..|++++|+.+|..+++.+....
T Consensus 20 Av~~D~~g~y~eAl~~Y~~aie~l~~a~ 47 (85)
T 2v6x_A 20 AIDLDTATQYEEAYTAYYNGLDYLMLAL 47 (85)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 3344567999999999999999876543
No 315
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=47.09 E-value=3e+02 Score=29.60 Aligned_cols=288 Identities=11% Similarity=-0.028 Sum_probs=152.6
Q ss_pred CCChHHHHHHHHHHHHHcCCCHHHHHHHHHH--------------HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHh
Q 005139 217 KPGLGPLLLKQARELISSGDNPQKALELALR--------------AAKSFEIGANGKPSLELVMCLHVIAAIYCSLGQYN 282 (712)
Q Consensus 217 ~p~~~~~l~~~a~~~~~~g~~~~~A~~~~~~--------------Al~~~~~~~~~~~~~~~~~~l~~la~~~~~~g~~~ 282 (712)
.|.....-+..+...+..|+ ..+|...... .+..+.+. +.-.++. +.......+..|+..
T Consensus 98 ~p~~~~~~c~~~~A~~~~G~-~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~--g~lt~~~---~~~R~~~al~~~~~~ 171 (618)
T 1qsa_A 98 KPGTTEAQCNYYYAKWNTGQ-SEEAWQGAKELWLTGKSQPNACDKLFSVWRAS--GKQDPLA---YLERIRLAMKAGNTG 171 (618)
T ss_dssp CCSSHHHHHHHHHHHHHTTC-HHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHT--TCSCHHH---HHHHHHHHHHTTCHH
T ss_pred CCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHC--CCCCHHH---HHHHHHHHHHCCCHH
Confidence 47777777888888888986 6666554333 22222111 1111211 222345566677777
Q ss_pred HHHHHHHHhhchh-------hhh-hcccchHHH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Q 005139 283 EAIPVLEQSIEIP-------VIE-EGQEHALAK---------FAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGET 345 (712)
Q Consensus 283 ~A~~~~~~al~~~-------~~~-~~~~~~~~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 345 (712)
.|..+...+-.-. ... ..+...... -.-...++.......+.+.|...+....... .-.
T Consensus 172 ~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~----~~~ 247 (618)
T 1qsa_A 172 LVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQ----QLN 247 (618)
T ss_dssp HHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT----TCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhcc----CCC
Confidence 7766655430000 000 001110000 0012233444444557778877776654321 111
Q ss_pred ChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Q 005139 346 DPRVGETCRYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADRRLMGLICETKGDHEAALEHLVLASMTMIAN 425 (712)
Q Consensus 346 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 425 (712)
..........++.-+...+...++...+.+... ... ..... - .++......|+++.|..+|...-
T Consensus 248 ~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~--e-~~~r~Alr~~d~~~a~~~~~~l~------ 312 (618)
T 1qsa_A 248 EDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQ---STSLI--E-RRVRMALGTGDRRGLNTWLARLP------ 312 (618)
T ss_dssp HHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCC---CHHHH--H-HHHHHHHHHTCHHHHHHHHHHSC------
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCC---ChHHH--H-HHHHHHHHCCCHHHHHHHHHHcc------
Confidence 223334444555555555535566666665431 111 12111 1 22333456799999999987542
Q ss_pred CCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------H-HHhcCCC------------CHHHHHHHHHHHHHHH
Q 005139 426 DQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA-------F-KTNKGEN------------HPAVASVFVRLADMYN 485 (712)
Q Consensus 426 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~-~~~~~~~------------~~~~~~~~~~la~~~~ 485 (712)
..........+.+|..+...|+.++|..+|+++..- + ..++.+. ...........+..+.
T Consensus 313 ~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~ 392 (618)
T 1qsa_A 313 MEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELM 392 (618)
T ss_dssp TTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHH
T ss_pred ccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChHHHHHHHHH
Confidence 222345677889999999999999999999887541 1 1221110 0001122345567788
Q ss_pred HcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccHHHHHHHH
Q 005139 486 RTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNELEQAIKLL 540 (712)
Q Consensus 486 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 540 (712)
..|....|...+...+.. . .+ .-...++.+....|.+..++...
T Consensus 393 ~~g~~~~a~~ew~~~~~~---~-----~~---~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 393 YWNLDNTARSEWANLVKS---K-----SK---TEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp HTTCHHHHHHHHHHHHTT---C-----CH---HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HCCChhhHHHHHHHHHhc---C-----CH---HHHHHHHHHHHHCCChHHHHHHH
Confidence 889999888777665432 0 11 22345677777888888776544
No 316
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=46.31 E-value=1.6e+02 Score=26.27 Aligned_cols=86 Identities=13% Similarity=0.187 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcc
Q 005139 453 FAYQKALTAFKTNK-GENHPAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMN 531 (712)
Q Consensus 453 ~~~~~al~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 531 (712)
.++++++..+.... -.+++....+|...+..+ ..+...++..+|.-....-- | ...+..|...|..+...|
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~I----G---~~~AlfYe~wA~~lE~~g 129 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGI----G---TKLSLFYEEFSKLLENAQ 129 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTS----S---TTBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCC----c---HHHHHHHHHHHHHHHHcC
Confidence 56777777654321 124788888888888876 23346688888877665421 1 234777889999999999
Q ss_pred cHHHHHHHHHHHHHH
Q 005139 532 ELEQAIKLLQKALKI 546 (712)
Q Consensus 532 ~~~~A~~~~~~al~~ 546 (712)
++.+|..+|+.+++.
T Consensus 130 ~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 130 FFLEAKVLLELGAEN 144 (202)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999999875
No 317
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=45.81 E-value=83 Score=36.20 Aligned_cols=97 Identities=9% Similarity=-0.117 Sum_probs=61.3
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-------------Hh-cCCCCCHHHHHHHHHHHHHHHHcCCHhHH
Q 005139 219 GLGPLLLKQARELISSGDNPQKALELALRAAKSFE-------------IG-ANGKPSLELVMCLHVIAAIYCSLGQYNEA 284 (712)
Q Consensus 219 ~~~~~l~~~a~~~~~~g~~~~~A~~~~~~Al~~~~-------------~~-~~~~~~~~~~~~l~~la~~~~~~g~~~~A 284 (712)
..+..-+.+|++|+..|+ +++|..+|++|-.-+. .+ ............|..+..++...+-++-+
T Consensus 838 ~t~~~~yv~gr~~L~~ge-~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~v 916 (950)
T 4gq2_M 838 SDPIAVYLKALIYLKSKE-AVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDA 916 (950)
T ss_dssp SSHHHHHHHHHHHHHTTC-HHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CChHHHHHHHHHHHHcCC-HHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHH
Confidence 344455889999999998 9999999987642110 00 00111122344677788888899999999
Q ss_pred HHHHHHhhchhhhhhcccchHHHHHHHHHHHHHHHH
Q 005139 285 IPVLEQSIEIPVIEEGQEHALAKFAGHMQLGDTYAM 320 (712)
Q Consensus 285 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~lg~~~~~ 320 (712)
+.+.+.|+.... ++++.....+|..+-.....
T Consensus 917 i~fA~lAI~~~~----~dd~~l~~~l~~r~f~~a~a 948 (950)
T 4gq2_M 917 LEFSLLADASKE----TDDEDLSIAITHETLKTACA 948 (950)
T ss_dssp HHHHHHHHHTCC----SCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcc----cCCccchHHHHHHHHHHHhh
Confidence 999999987642 23333333445554444433
No 318
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=45.65 E-value=37 Score=29.18 Aligned_cols=73 Identities=4% Similarity=-0.136 Sum_probs=49.1
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC
Q 005139 354 RYLAEAHVQALQFSEAQKFCQMALDIHKDNGSPASLEEAADR-RLMGLICETKGDHEAALEHLVLASMTMIAND 426 (712)
Q Consensus 354 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~a~~~-~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 426 (712)
+.-+..++..|+|-+|-+.++.+-...+..........+.+. ...|..+...|+..-|...+.+++..+....
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~ 109 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVP 109 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 445666777899999999998776533211001223334445 5566677889999999999999987765543
No 319
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}
Probab=45.16 E-value=2.1e+02 Score=27.33 Aligned_cols=159 Identities=4% Similarity=-0.097 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHH
Q 005139 304 ALAKFAGHMQLGDTYAMLGQ---LENSLMCYTTGLEVQKQVLGETDPRVGETCRYLAEAHVQALQF--SEAQKFCQMALD 378 (712)
Q Consensus 304 ~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~ 378 (712)
+...+..+..-|.+--..|- -+-|.++|.+|+.++++...+. .....++..+...+.....+ +.-..+..++..
T Consensus 95 ~elalrL~Lq~A~~ad~~~~~~~e~iaYEFf~qAf~iYEe~IsdS-k~Q~~al~~ii~tL~~~~~f~~enye~L~tk~t~ 173 (298)
T 2r17_C 95 AELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDS-KAQLAAITLIIGTFERMKCFSEENHEPLRTQCAL 173 (298)
T ss_dssp CHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHhhccch-HHHHHHHHHHHHHHHHccCCCHhhHHHHHHHHHH
Confidence 44445556666666666666 6778899999999998854432 23344555555555555443 222222333322
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHhCCCChhHHHHH---HHHHHHHHHc
Q 005139 379 IHKDNGSPASLEEAADRRLMGLICET----------KGDHEAALEHLVLASMTMIANDQDAEVASVD---CSIGDTYLSL 445 (712)
Q Consensus 379 ~~~~~~~~~~~~~a~~~~~la~~~~~----------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~---~~la~~~~~~ 445 (712)
...+.. ..+..+.+...-+.+++. ..+-+..+++++++++++...-+.......+ .+.-..|+..
T Consensus 174 ~askLL--KK~dQcraV~~cshLfW~~~~~~~~~~~~rd~krVleCLqkaLkiA~~~~d~~~~v~LfveILn~ylyff~~ 251 (298)
T 2r17_C 174 AASKLL--KKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPSLQVQLFIEILNRYIYFYEK 251 (298)
T ss_dssp HHHTCS--SHHHHHHHHHHTHHHHHTCBCTTTTTCBCCCHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcc--CcHHHHHHHHHHHHHhcCCCccccchhhccchHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHhhhhC
Confidence 233332 235556666666777764 2578899999999999887764433332222 2334456667
Q ss_pred CCHHHHHHHHHHHHHHHHHh
Q 005139 446 SRYDEAGFAYQKALTAFKTN 465 (712)
Q Consensus 446 g~~~~A~~~~~~al~~~~~~ 465 (712)
|...-..++....+++.++.
T Consensus 252 g~~~Vt~~~in~LI~lI~~~ 271 (298)
T 2r17_C 252 ENDAVTIQVLNQLIQKIRED 271 (298)
T ss_dssp TCTTSCHHHHHHHHHHHHTT
T ss_pred CCCcccHHHHHHHHHHHHHH
Confidence 77555666677777776653
No 320
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=44.56 E-value=2.5e+02 Score=27.86 Aligned_cols=34 Identities=18% Similarity=0.146 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHH
Q 005139 307 KFAGHMQLGDTYAMLG---------QLENSLMCYTTGLEVQKQ 340 (712)
Q Consensus 307 ~~~~~~~lg~~~~~~g---------~~~~A~~~~~~al~~~~~ 340 (712)
.+.+++++|.+|...+ ....|..+|++|--++.-
T Consensus 116 ~a~VLfNiaal~s~~a~~~~r~~~~glK~A~~~fq~AAG~f~~ 158 (363)
T 3rau_A 116 QACILYNLGALHSMLGAMDKRVSEEGMKVSCTHFQCAAGAFAY 158 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH
Confidence 4567888888886654 356788888888776643
No 321
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=42.12 E-value=34 Score=25.29 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Q 005139 475 SVFVRLADMYNRTGKLRESKSYCENALRIYEKP 507 (712)
Q Consensus 475 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 507 (712)
.-...+|+=|...|+|+.|+.+|+.+++...+.
T Consensus 13 ~e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~ 45 (78)
T 2rpa_A 13 VENVKLAREYALLGNYDSAMVYYQGVLDQMNKY 45 (78)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 345678889999999999999999999876553
No 322
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=41.74 E-value=1.2e+02 Score=31.22 Aligned_cols=41 Identities=17% Similarity=0.168 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHccc
Q 005139 617 NEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAIGR 657 (712)
Q Consensus 617 ~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~g~ 657 (712)
++|+++|++|+..++++-..++++....+.+++..|...|+
T Consensus 449 ~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~aGD 489 (526)
T 2wb7_A 449 QGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMAGD 489 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhhhhhccH
Confidence 68889999999999999888899999999999999988887
No 323
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=41.43 E-value=52 Score=28.28 Aligned_cols=72 Identities=14% Similarity=0.152 Sum_probs=47.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 005139 562 AQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVAL-NQMGLACVQRYSINEAVELFEEARSILEQE 633 (712)
Q Consensus 562 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 633 (712)
+.-+..++..|+|-+|-+.++.+-.....-........+.+. ...|....+.|+..-|..++.+++..+...
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~ 108 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGV 108 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 345667777899999999888875521100001111223344 445566678899999999999999987654
No 324
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}
Probab=38.58 E-value=2.7e+02 Score=27.90 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q 005139 599 FGVALNQMGLACVQRYSINEAVELFEEARSILEQEC 634 (712)
Q Consensus 599 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 634 (712)
.+.+++..|..+...+++.+|+.+++.|.+.+....
T Consensus 256 ~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a~ 291 (392)
T 1zb1_A 256 KSLSAYYHGLHLEEENRVGEAIAFLDFSMQQLISSL 291 (392)
T ss_dssp HHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence 345667778888888999999999999998877654
No 325
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=38.16 E-value=1.3e+02 Score=22.65 Aligned_cols=47 Identities=17% Similarity=0.142 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH-HHHHHHHH
Q 005139 601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVY-SNLAGTYD 653 (712)
Q Consensus 601 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~-~~La~~~~ 653 (712)
..+..-|.-+.+.++|.+|..+|+++..+ ..+|+.-.++ +.++.|-.
T Consensus 54 r~~i~eak~~y~~~ny~ea~~l~~k~~n~------ten~~i~ki~~fyl~ec~k 101 (106)
T 2vkj_A 54 RSLIAEGKDLFETANYGEALVFFEKALNL------SDNEEIKKIASFYLEECRK 101 (106)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHcc------ccCHHHHHHHHHHHHHHHH
Confidence 45556677788899999999999999876 4466665555 55665543
No 326
>2kzq_A Envelope glycoprotein E2 peptide; membrane protein, E2 structural protein, HCV; NMR {Hepatitis c virus}
Probab=36.61 E-value=22 Score=21.40 Aligned_cols=17 Identities=29% Similarity=0.516 Sum_probs=14.5
Q ss_pred CccccHHHHHHhhhhhc
Q 005139 52 GVDTSIEQLYENVCDMQ 68 (712)
Q Consensus 52 ~~~~~~~~~~~~~~~~~ 68 (712)
...|-...||+|+||.|
T Consensus 5 alstGliHlhqnivdvq 21 (36)
T 2kzq_A 5 ALSTGLLHLHQNIVDVQ 21 (36)
T ss_dssp CCCCHHHHHHHHHHTTT
T ss_pred hhhccceehhhhhehhe
Confidence 46678899999999977
No 327
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=36.20 E-value=89 Score=23.98 Aligned_cols=66 Identities=18% Similarity=0.139 Sum_probs=44.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q 005139 564 MGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQE 633 (712)
Q Consensus 564 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 633 (712)
.|..++..|+|-+|-+.++.+-.... ++......+.+....|......|+. |..++.+++..+...
T Consensus 7 ~~~~lfn~g~~~eaHEvlE~~W~~~~--~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~ 72 (94)
T 2cwy_A 7 EVLGLWRAGRYYEVHEVLEPYWLKAT--GEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGL 72 (94)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCChHHHHHHHHHHHhhCC--CchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhC
Confidence 45667788999999999988876431 1111122334444555666678888 999999999987654
No 328
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=35.75 E-value=70 Score=28.78 Aligned_cols=59 Identities=10% Similarity=0.089 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHH
Q 005139 430 EVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLR 491 (712)
Q Consensus 430 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 491 (712)
..+..++.+|.++...++|.+|...+..|+..+.+.. ......++..|.-+-..+|++.
T Consensus 12 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~---~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 12 QRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS---QKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC---HHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH---HHHHHHHHHHHHHHHHHcCCCC
Confidence 3455677788888888888888888888877643221 1223334444444444556643
No 329
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=35.73 E-value=2.6e+02 Score=25.51 Aligned_cols=180 Identities=11% Similarity=-0.041 Sum_probs=95.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcCCCCCCChh
Q 005139 437 SIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR-TGKLRESKSYCENALRIYEKPVPGVPPEE 515 (712)
Q Consensus 437 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 515 (712)
.+|.+....++|++...+.+++...+..... .....-.+.|..+|-. .|....+...+...-+.. + + ...
T Consensus 11 ~~AKlaeqaeRyddM~~~mk~v~~~~~~~~~---eLt~EERnLLSvAYKNvig~rR~swRiissiEqke-k---~--~~~ 81 (227)
T 2o8p_A 11 YRAQVFEWGGCFDKMFEALKSLIYLSEFENS---EFDDEERHLLTLCIKHKISDYRTMTSQVLQEQTKQ-L---N--NDE 81 (227)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-C---S--CHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhhccCC---CCCHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHH-c---C--CHH
Confidence 5677888899999999998888773211111 1112222233333321 122223333322211110 0 1 111
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhCCCCCC-cHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHH
Q 005139 516 IASGLTDVSSIYESMNELEQAIKLLQKALKIYNDAPGQQS-TVAGIEAQMGVMYY-----MLGNYSDSYDSFKNAISKLR 589 (712)
Q Consensus 516 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~la~~~~-----~~g~~~~A~~~~~~al~~~~ 589 (712)
...+..-|... =-.+=...+...+.+.....-+.. .....+-..|..|. ..|+.+.|...|+.|.+++.
T Consensus 82 ----~~~~i~~yr~k-ie~EL~~iC~dil~lld~~Lip~aEskVFY~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~ 156 (227)
T 2o8p_A 82 ----LVKICSEYVFS-LRKDIKAFLQSFEDCVDRLVEKSFFSKFFKLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLC 156 (227)
T ss_dssp ----HHHHHHHHHHH-HHHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHH-HHHHHHHHHhhHHHHHHHhccCcHHHHHHHHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHH
Confidence 11122222111 112223445566666665433221 11112223444443 35678999999999999988
Q ss_pred H-hCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 005139 590 A-IGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSIL 630 (712)
Q Consensus 590 ~-~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 630 (712)
. +.+.+|..++.+++.---.|.-+++.++|..+.++|+.+.
T Consensus 157 ~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 157 EHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp HCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred hhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5 5555655566666655566677899999999999998864
No 330
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=34.20 E-value=74 Score=23.12 Aligned_cols=31 Identities=13% Similarity=0.176 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005139 476 VFVRLADMYNRTGKLRESKSYCENALRIYEK 506 (712)
Q Consensus 476 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (712)
--..+|..+...|++++|..+|-+|+.++.+
T Consensus 19 ~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 19 EEIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 3456789999999999999999999998654
No 331
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=31.53 E-value=4e+02 Score=26.46 Aligned_cols=33 Identities=6% Similarity=-0.002 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHHHH
Q 005139 307 KFAGHMQLGDTYAMLG------------QLENSLMCYTTGLEVQK 339 (712)
Q Consensus 307 ~~~~~~~lg~~~~~~g------------~~~~A~~~~~~al~~~~ 339 (712)
.+.+++++|.+|...+ ....|..+|++|--++.
T Consensus 113 ~a~VLfNiaal~sq~A~~~~~~~r~~~e~lK~A~~~fq~AAG~f~ 157 (376)
T 3r9m_A 113 LISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGIFK 157 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH
Confidence 4556777877776543 25778888888876654
No 332
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=31.29 E-value=1.4e+02 Score=26.64 Aligned_cols=59 Identities=5% Similarity=0.013 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHHHcccH
Q 005139 471 PAVASVFVRLADMYNRTGKLRESKSYCENALRIYEKPVPGVPPEEIASGLTDVSSIYESMNEL 533 (712)
Q Consensus 471 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 533 (712)
...+...+.+|.++...++|.+|.+.+..|+..+... .......++..|--+-.-+|+.
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~----~~~~k~~IL~yLIp~~Ll~G~i 69 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS----SQKNKRMILIYLLPVKMLLGHM 69 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT----CHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh----HHHHHHHHHHHHHHHHHHcCCC
Confidence 4567788899999999999999999999999986542 1233344455555555556664
No 333
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=31.27 E-value=3.3e+02 Score=25.42 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhc
Q 005139 449 DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNR-TGKLRESKSYCENALRIYEK 506 (712)
Q Consensus 449 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~ 506 (712)
+.|...|++|++++ ....+.||.......+.+..|+. +++.++|..+.++|+.-.-.
T Consensus 173 e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai~ 230 (260)
T 2npm_A 173 EDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMAIE 230 (260)
T ss_dssp HHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 57888999999999 76777888877777777777766 79999999988888775433
No 334
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=31.02 E-value=1e+02 Score=25.81 Aligned_cols=42 Identities=12% Similarity=0.103 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 005139 601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGV 644 (712)
Q Consensus 601 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~ 644 (712)
..+...|..|...||.+.|.-+|-+.+.++..+ +.||+....
T Consensus 43 ~~L~r~A~~y~~EGd~E~AYilymRy~~L~~kI--pkHpdyk~~ 84 (144)
T 2a9u_A 43 LKIFKTAEECRLDRDEERAYVLYMKYVTVYNLI--KKRPDFKQQ 84 (144)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TTSHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--hcCcchhhh
Confidence 455667899999999999999999999998655 448887653
No 335
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=30.61 E-value=1.3e+02 Score=23.09 Aligned_cols=67 Identities=12% Similarity=-0.129 Sum_probs=43.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 005139 397 LMGLICETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTN 465 (712)
Q Consensus 397 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 465 (712)
..|..++..|+|=+|-+.++..-..............+....|......|+. |...+.+++......
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~ 72 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGL 72 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhC
Confidence 3466677889999999999877643211001112233344445556678888 999999999987654
No 336
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=29.91 E-value=1e+02 Score=23.69 Aligned_cols=30 Identities=13% Similarity=0.203 Sum_probs=25.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Q 005139 477 FVRLADMYNRTGKLRESKSYCENALRIYEK 506 (712)
Q Consensus 477 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 506 (712)
-..+|..+...|+++.|+.+|-+|+.++.+
T Consensus 23 eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 23 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 356788999999999999999999998755
No 337
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}
Probab=29.86 E-value=3.7e+02 Score=25.64 Aligned_cols=154 Identities=12% Similarity=0.106 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHhc
Q 005139 432 ASVDCSIGDTYLSLSR---YDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKL--RESKSYCENALRIYEK 506 (712)
Q Consensus 432 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~~~ 506 (712)
...+..-|.+.-..|- -+-|.+.|.+|+.++++... +......++..+...+.....+ +.-..+..++.....+
T Consensus 99 lrL~Lq~A~~ad~~~~~~~e~iaYEFf~qAf~iYEe~Is-dSk~Q~~al~~ii~tL~~~~~f~~enye~L~tk~t~~ask 177 (298)
T 2r17_C 99 LRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEIS-DSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASK 177 (298)
T ss_dssp HHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHHHccCCCHhhHHHHHHHHHHHHHh
Confidence 3444444454445555 56788889999999988543 2444455666666666665543 2222333344333344
Q ss_pred CCCCCCChhHHHHHHHHHHHHHH----------cccHHHHHHHHHHHHHHHHhCCCCCCc---HHHHHHHHHHHHHHcCC
Q 005139 507 PVPGVPPEEIASGLTDVSSIYES----------MNELEQAIKLLQKALKIYNDAPGQQST---VAGIEAQMGVMYYMLGN 573 (712)
Q Consensus 507 ~~~~~~~~~~~~~~~~la~~~~~----------~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~~la~~~~~~g~ 573 (712)
.+ ..++...+.+.-+.++.. ..+-+..++++++++++.......... ...+ .+.-..|+..|+
T Consensus 178 LL---KK~dQcraV~~cshLfW~~~~~~~~~~~~rd~krVleCLqkaLkiA~~~~d~~~~v~LfveI-Ln~ylyff~~g~ 253 (298)
T 2r17_C 178 LL---KKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPSLQVQLFIEI-LNRYIYFYEKEN 253 (298)
T ss_dssp CS---SHHHHHHHHHHTHHHHHTCBCTTTTTCBCCCHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHH-HHHHHHHHTTTC
T ss_pred cc---CcHHHHHHHHHHHHHhcCCCccccchhhccchHHHHHHHHHHHHHHHHHhChhhHHHHHHHH-HHHHHhhhhCCC
Confidence 32 246667777777887764 247789999999999998876332111 1111 233445666777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005139 574 YSDSYDSFKNAISKLRA 590 (712)
Q Consensus 574 ~~~A~~~~~~al~~~~~ 590 (712)
..-..+++...+++.++
T Consensus 254 ~~Vt~~~in~LI~lI~~ 270 (298)
T 2r17_C 254 DAVTIQVLNQLIQKIRE 270 (298)
T ss_dssp TTSCHHHHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHHHH
Confidence 66666777777776654
No 338
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=29.11 E-value=1.8e+02 Score=21.80 Aligned_cols=48 Identities=15% Similarity=0.266 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCChhHHHHH-HHHHHHH
Q 005139 307 KFAGHMQLGDTYAMLGQLENSLMCYTTGLEVQKQVLGETDPRVGETC-RYLAEAH 360 (712)
Q Consensus 307 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~la~~~ 360 (712)
.+..+..-|.-++..++|.+|..+|+++..+ .++|..-.++ +.++.|-
T Consensus 52 ~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~------ten~~i~ki~~fyl~ec~ 100 (106)
T 2vkj_A 52 KARSLIAEGKDLFETANYGEALVFFEKALNL------SDNEEIKKIASFYLEECR 100 (106)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHcc------ccCHHHHHHHHHHHHHHH
Confidence 3445777788899999999999999999876 3356665555 6666554
No 339
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=27.32 E-value=62 Score=24.91 Aligned_cols=30 Identities=10% Similarity=0.206 Sum_probs=25.6
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Q 005139 520 LTDVSSIYESMNELEQAIKLLQKALKIYND 549 (712)
Q Consensus 520 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 549 (712)
-..+|..+...|+++.|+.+|-+|+.++++
T Consensus 23 eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 23 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 456889999999999999999999988754
No 340
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=27.11 E-value=1.1e+02 Score=22.16 Aligned_cols=27 Identities=15% Similarity=0.186 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139 603 LNQMGLACVQRYSINEAVELFEEARSI 629 (712)
Q Consensus 603 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 629 (712)
-..+|..+...|++++|..+|-+|+.+
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~V 46 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAV 46 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 356889999999999999999999987
No 341
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=26.78 E-value=2.8e+02 Score=28.50 Aligned_cols=40 Identities=13% Similarity=0.147 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Q 005139 449 DEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTG 488 (712)
Q Consensus 449 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 488 (712)
++|+.+|++|+..++++...+.+.....+..++..|...|
T Consensus 449 ~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~yE~aG 488 (526)
T 2wb7_A 449 QGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKKHEMAG 488 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhhhhhcc
Confidence 4566666666666666665666666666666665544333
No 342
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=26.13 E-value=1.7e+02 Score=24.46 Aligned_cols=55 Identities=18% Similarity=0.224 Sum_probs=40.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139 441 TYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVASVFVRLADMYNRTGKLRESKSYCENALRI 503 (712)
Q Consensus 441 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 503 (712)
....+|+-++-.+.+...+.- .+-.+..+..+|..|.+.|+..+|.+++.+|-+.
T Consensus 100 ~lv~~~KkDqLdki~~~~l~n--------~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 100 ILVIQGKRDKLEEIGREILKN--------NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHC----------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhccHhHHHHHHHHHhcc--------CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 345677777766666554331 4444678899999999999999999999998765
No 343
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=25.61 E-value=5e+02 Score=26.28 Aligned_cols=35 Identities=14% Similarity=0.156 Sum_probs=27.4
Q ss_pred chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139 303 HALAKFAGHMQLGDTYAMLGQLENSLMCYTTGLEV 337 (712)
Q Consensus 303 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 337 (712)
.|...+..+..|+..+...|+|.+|--++..+..+
T Consensus 6 ~pdl~~~wl~~La~~h~~~~n~~EAa~cl~~~aal 40 (428)
T 2wm9_A 6 TPELRKTWLDSMARIHVKNGDLSEAAMCYVHVTAL 40 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34445666899999999999999999888755543
No 344
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=24.62 E-value=1e+02 Score=25.96 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 005139 601 VALNQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTL 642 (712)
Q Consensus 601 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~ 642 (712)
..+...|.+|...|+.+.|.-+|-++..++-..+. .||+..
T Consensus 41 ~~llr~A~~y~~egd~e~AYily~R~~~L~~e~Ip-kHpdy~ 81 (146)
T 2xze_A 41 VEIIRMASIYSEEGNIEHAFILYNKYITLFIEKLP-KHRDYK 81 (146)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTGG-GSTTTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHcc-cCccch
Confidence 45667789999999999999999999998854332 266653
No 345
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=24.59 E-value=83 Score=32.50 Aligned_cols=32 Identities=19% Similarity=0.153 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005139 389 LEEAADRRLMGLICETKGDHEAALEHLVLASM 420 (712)
Q Consensus 389 ~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~ 420 (712)
.....++..+|.+|+..|+|++|..+.++++.
T Consensus 187 ~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 187 MNKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 33445677888888888888888888887774
No 346
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane, phosphoprotein, nucleotide-binding, alternative splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Probab=23.91 E-value=3.7e+02 Score=27.30 Aligned_cols=95 Identities=11% Similarity=0.088 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------hCCCC-----------------------------ChHHHHHH
Q 005139 559 GIEAQMGVMYYMLGNYSDSYDSFKNAISKLRA------IGERK-----------------------------SAFFGVAL 603 (712)
Q Consensus 559 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~-----------------------------~~~~~~~~ 603 (712)
..+..|+..+...|+|.||-.++-.+..+..+ ..... .......+
T Consensus 12 ~wl~~La~~h~~~~n~~EAa~cl~~~aaliae~L~~~~~~~~~~~~f~~i~p~~~ee~~~~~d~g~~~~~fte~~l~~ll 91 (428)
T 2wm9_A 12 TWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGVFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELL 91 (428)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHTTSSSCCGGGGTTTCGGGGGGC---------CCSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhcCCCccchhccccccCCCccccCHHHHHHHH
Confidence 34568888999999999998888755443222 10000 00011234
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc
Q 005139 604 NQMGLACVQRYSINEAVELFEEARSILEQECGPYHPDTLGVYSNLAGTYDAI 655 (712)
Q Consensus 604 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~La~~~~~~ 655 (712)
...+..+.+.+.|+.|+.+++..+..++... +......++..++.+|...
T Consensus 92 ~~ai~~f~kg~~~E~ai~~~k~L~~~ye~~~--dy~~Ls~~~~~~a~~y~~I 141 (428)
T 2wm9_A 92 EQCADGLWKAERYELIADIYKLIIPIYEKRR--DFERLAHLYDTLHRAYSKV 141 (428)
T ss_dssp HHHHHHHHHTTCGGGHHHHHTTTHHHHHHTT--CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHH
Confidence 4455666677788899999999888888752 2344556666777777654
No 347
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=22.66 E-value=94 Score=32.16 Aligned_cols=32 Identities=22% Similarity=0.126 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005139 389 LEEAADRRLMGLICETKGDHEAALEHLVLASM 420 (712)
Q Consensus 389 ~~~a~~~~~la~~~~~~g~~~~A~~~~~~al~ 420 (712)
.....++..+|.+|+..|+|++|..+.++++.
T Consensus 193 ~tk~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 193 VNRWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 34455677888888888888888888887774
No 348
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=22.62 E-value=2.5e+02 Score=23.48 Aligned_cols=53 Identities=13% Similarity=0.027 Sum_probs=37.1
Q ss_pred HHcCCHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005139 403 ETKGDHEAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTA 461 (712)
Q Consensus 403 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 461 (712)
..+|+-++-.+.+...+ .+.+-.+..+..+|.+|.+.|+..+|.+++.+|-+.
T Consensus 102 v~~~KkDqLdki~~~~l------~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 102 VIQGKRDKLEEIGREIL------KNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHTTCHHHHHHHHHHHC--------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHhccHhHHHHHHHHHh------ccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 34566555555444322 344445677889999999999999999999998764
No 349
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=21.58 E-value=1e+02 Score=31.73 Aligned_cols=33 Identities=9% Similarity=-0.116 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139 597 AFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (712)
Q Consensus 597 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 629 (712)
.....++..+|++|+..|++++|+.+.++++..
T Consensus 187 ~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 187 MNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 344568888999999999999999999999875
No 350
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=21.55 E-value=2.8e+02 Score=21.37 Aligned_cols=60 Identities=8% Similarity=0.029 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC
Q 005139 561 EAQMGVMYYMLGNYSDSYDSFKNAISKLRAIGERKSAFFGVALNQMGLACVQRYSINEAVELFEEARSILEQECGP 636 (712)
Q Consensus 561 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 636 (712)
.+.-+...+..++|..|..+.+++.- --.|+..-....+-.+++.-+++.+..+++.+|.
T Consensus 37 Kl~~A~~Am~~~~y~~Ar~lAEqAe~----------------DArLAeAka~~~Ka~~~~~el~~~I~~LrqEl~~ 96 (98)
T 4fm3_A 37 KYAAAQIAMTAESYKKARLLAEQAEL----------------DARLAESKVLTQKSKDQLGELDKSLKRLRKQLGE 96 (98)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHH----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34456677788999999999988843 2234444444445567777788888887777664
No 351
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=21.27 E-value=6.5e+02 Score=25.49 Aligned_cols=118 Identities=16% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH-------------
Q 005139 409 EAALEHLVLASMTMIANDQDAEVASVDCSIGDTYLSLSRYDEAGFAYQKALTAFKTNKGENHPAVAS------------- 475 (712)
Q Consensus 409 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~------------- 475 (712)
+.-..+.-+.+..+...+........+..|+..+...++|.+|--++.....++.=......+....
T Consensus 12 d~r~~~~~~l~~~y~~~~~~el~i~~l~~L~~~h~~~~ny~EAa~~l~lhA~l~~w~~~~~~~~~~~~~~~~~qt~~~~k 91 (436)
T 2yin_A 12 DNRMSCTVNLLNFYKDNNREEMYIRYLYKLRDLHLDCDNYTEAAYTLLLHTWLLKWSDEQCASQVMQTGQQHPQTHRQLK 91 (436)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSCCC--------------CHHHHH
T ss_pred chHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHhCCCccccCcccccCCCCccccHHHHH
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCCC-CCChhHHHHHHHHHHHHHH
Q 005139 476 --VFVRLADMYNRTGKLRESKSYCENALRIYEKPVPG-VPPEEIASGLTDVSSIYES 529 (712)
Q Consensus 476 --~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~~~la~~~~~ 529 (712)
.+...+..+.+-+.|+.|+.+++..+..++. . .+-...+.++..++.+|..
T Consensus 92 e~L~~~~i~~f~kg~~~E~ai~l~k~L~~~yE~---~~~Dy~~Ls~~~~~~a~~y~~ 145 (436)
T 2yin_A 92 ETLYETIIGYFDKGKMWEEAISLCKELAEQYEM---EIFDYELLSQNLIQQAKFYES 145 (436)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---TSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
No 352
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=20.37 E-value=1.2e+02 Score=31.43 Aligned_cols=33 Identities=18% Similarity=0.053 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 005139 597 AFFGVALNQMGLACVQRYSINEAVELFEEARSI 629 (712)
Q Consensus 597 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 629 (712)
.....++..+|++|+-.|++++|..+.++++..
T Consensus 193 ~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 193 VNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 345578888999999999999999999999874
Done!