BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005140
(712 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NLW|A Chain A, Solution Structure Of The Rrm Domain Of Human Eukaryotic
Initiation Factor 3b
Length = 105
Score = 85.9 bits (211), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 62/96 (64%), Gaps = 4/96 (4%)
Query: 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEY 116
G ++IVVDN+P V ++ EKL+ VI KI+S+ G I D + P E K+ GY F+EY
Sbjct: 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITND--FYP--EEDGKTKGYIFLEY 68
Query: 117 NTPQEAELAKEKTNGYKLDRAHIFAVNMFDDFDKFM 152
+P A A + +GYKLD+ H F VN+F DFDK+M
Sbjct: 69 ASPAHAVDAVKNADGYKLDKQHTFRVNLFTDFDKYM 104
>pdb|2KRB|A Chain A, Solution Structure Of Eif3b-Rrm Bound To Eif3j Peptide
Length = 81
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 53/84 (63%), Gaps = 4/84 (4%)
Query: 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTP 119
++IVVDN+P V ++ EKL+ VI KI+S+ G I D + P E K+ GY F+EY +P
Sbjct: 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITND--FYP--EEDGKTKGYIFLEYASP 57
Query: 120 QEAELAKEKTNGYKLDRAHIFAVN 143
A A + +GYKLD+ H F VN
Sbjct: 58 AHAVDAVKNADGYKLDKQHTFRVN 81
>pdb|3NS6|A Chain A, Crystal Structure Of Hte Rna Recognition Motif Of Yeast
Eif3b Residues 76-170
pdb|3NS6|B Chain B, Crystal Structure Of Hte Rna Recognition Motif Of Yeast
Eif3b Residues 76-170
Length = 100
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 62 IVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQE 121
IVV+ PV+P K L+ + ++S+ G K + P+D T K+ G+ F+E + +
Sbjct: 9 IVVNGAPVIPSAKVPVLKKALTSLFSKAG--KVVNMEFPIDEATGKTKGFLFVECGSMND 66
Query: 122 AELAKEKTNGYKLDRAHIFAVNMFDDFDKF 151
A+ + +G +LD H + D +++
Sbjct: 67 AKKIIKSFHGKRLDLKHRLFLYTMKDVERY 96
>pdb|3NS5|A Chain A, Crystal Structure Of The Rna Recognition Motif Of Yeast
Eif3b Residues 76-161
pdb|3NS5|B Chain B, Crystal Structure Of The Rna Recognition Motif Of Yeast
Eif3b Residues 76-161
Length = 91
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEY 116
G IVV+ PV+P K L+ + ++S+ G K + P+D T K+ G+ F+E
Sbjct: 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAG--KVVNMEFPIDEATGKTKGFLFVEC 61
Query: 117 NTPQEAELAKEKTNGYKLDRAH 138
+ +A+ + +G +LD H
Sbjct: 62 GSMNDAKKIIKSFHGKRLDLKH 83
>pdb|2QFJ|A Chain A, Crystal Structure Of First Two Rrm Domains Of Fir Bound To
Ssdna From A Portion Of Fuse
pdb|2QFJ|B Chain B, Crystal Structure Of First Two Rrm Domains Of Fir Bound To
Ssdna From A Portion Of Fuse
Length = 216
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 17/90 (18%)
Query: 82 IRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFA 141
I+ ++ G IK L DP T K GY FIEY Q ++ A + +
Sbjct: 142 IKSVFEAFGKIKSATLAR--DPTTGKHKGYGFIEYEKAQSSQDA-------------VSS 186
Query: 142 VNMFDDFDKFMKVPDEWAPPEH--KPYTPG 169
+N+FD ++++V PP P TPG
Sbjct: 187 MNLFDLGGQYLRVGKAVTPPMPLLTPATPG 216
>pdb|1H2T|Z Chain Z, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|X Chain X, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|Y Chain Y, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2V|Z Chain Z, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
pdb|1N52|B Chain B, Cap Binding Complex
pdb|1N54|B Chain B, Cap Binding Complex M7gpppg Free
pdb|3FEX|B Chain B, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|B Chain B, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 156
Score = 37.0 bits (84), Expect = 0.034, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 75 FEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134
F E I +++S+ G IK+ + M +D + + G+CF+EY + +AE A NG +L
Sbjct: 49 FYTTEEQIYELFSKSGDIKK--IIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRL 106
Query: 135 D 135
D
Sbjct: 107 D 107
>pdb|2JRS|A Chain A, Solution Nmr Structure Of Caper Rrm2 Domain. Northeast
Structural Genomics Target Hr4730a
Length = 108
Score = 37.0 bits (84), Expect = 0.036, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 75 FEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134
F E ++R I+ G I+ L M D ET +S GY FI ++ + A+ A E+ NG++L
Sbjct: 36 FNITEDMLRGIFEPFGRIESIQLMM--DSETGRSKGYGFITFSDSECAKKALEQLNGFEL 93
>pdb|2X1A|A Chain A, Structure Of Rna15 Rrm With Rna Bound (G)
pdb|2X1B|A Chain A, Structure Of Rna15 Rrm
Length = 97
Score = 36.2 bits (82), Expect = 0.072, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 75 FEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134
+++ E I + S +G + L M DP+T +S GY FIE+ + + A NGY+L
Sbjct: 13 YDQTEEQILDLCSNVGPVIN--LKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQL 70
>pdb|2X1F|A Chain A, Structure Of Rna15 Rrm With Bound Rna (Gu)
Length = 96
Score = 35.8 bits (81), Expect = 0.074, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 75 FEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134
+++ E I + S +G + L M DP+T +S GY FIE+ + + A NGY+L
Sbjct: 12 YDQTEEQILDLCSNVGPVIN--LKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQL 69
>pdb|2KXN|B Chain B, Nmr Structure Of Human Tra2beta1 Rrm In Complex With
Aagaac Rna
Length = 129
Score = 35.8 bits (81), Expect = 0.079, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 82 IRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135
+R+++S+ G I + + + D ++++S G+ F+ + +A+ AKE+ NG +LD
Sbjct: 63 LREVFSKYGPIAD--VSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD 114
>pdb|3UWT|A Chain A, Crystal Structure Of A Rna Binding Domain Of Poly-U
Binding Splicing Factor 60kda (Puf60) From Homo Sapiens
At 2.50 A Resolution
Length = 200
Score = 35.8 bits (81), Expect = 0.084, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 17/90 (18%)
Query: 82 IRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFA 141
I+ ++ G IK L DP T K GY FIEY Q ++ A + +
Sbjct: 126 IKSVFEAFGKIKSCTL--ARDPTTGKHKGYGFIEYEKAQSSQDA-------------VSS 170
Query: 142 VNMFDDFDKFMKVPDEWAPPEH--KPYTPG 169
N+FD ++++V PP P TPG
Sbjct: 171 XNLFDLGGQYLRVGKAVTPPXPLLTPATPG 200
>pdb|2KM8|B Chain B, Interdomain Rrm Packing Contributes To Rna Recognition In
The Rna15, Hrp1, Anchor Rna 3' Processing Ternary
Complex
Length = 84
Score = 35.8 bits (81), Expect = 0.087, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 75 FEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134
+++ E I + S +G + L M DP+T +S GY FIE+ + + A NGY+L
Sbjct: 14 YDQTEEQILDLCSNVGPVIN--LKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQL 71
>pdb|2CQC|A Chain A, Solution Structure Of The Rna Recognition Motif In
ArginineSERINE-Rich Splicing Factor 10
Length = 95
Score = 35.4 bits (80), Expect = 0.098, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 82 IRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139
+R+++S+ G I + + + D ++++S G+ F+ + +A+ AKE+ NG +LD I
Sbjct: 32 LREVFSKYGPIAD--VSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87
>pdb|2RRA|A Chain A, Solution Structure Of Rna Binding Domain In Human Tra2
Beta Protein In Complex With Rna (Gaagaa)
Length = 99
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 82 IRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139
+R+++S+ G I + + + D ++++S G+ F+ + +A+ AKE+ NG +LD I
Sbjct: 32 LREVFSKYGPIAD--VSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87
>pdb|2RRB|A Chain A, Refinement Of Rna Binding Domain In Human Tra2 Beta
Protein
Length = 96
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 82 IRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139
+R+++S+ G I + + + D ++++S G+ F+ + +A+ AKE+ NG +LD I
Sbjct: 29 LREVFSKYGPIAD--VSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 84
>pdb|4EGL|A Chain A, Crystal Structure Of Two Tandem Rna Recognition Motifs Of
Human Antigen R
Length = 177
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 82 IRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139
+R ++S IG ++ L D SLGY F+ Y T ++AE A NG +L I
Sbjct: 19 LRSLFSSIGEVESAKLIR--DKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTI 74
>pdb|4ED5|A Chain A, Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur
Complexed With Rna
pdb|4ED5|B Chain B, Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur
Complexed With Rna
Length = 177
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 82 IRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139
+R ++S IG ++ L D SLGY F+ Y T ++AE A NG +L I
Sbjct: 19 LRSLFSSIGEVESAKLIR--DKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTI 74
>pdb|2DNZ|A Chain A, Solution Structure Of The Second Rna Binding Domain Of Rna
Binding Motif Protein 23
Length = 95
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 75 FEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134
F E ++R I+ G I D + + D +T +S GY FI ++ + A A E+ NG++L
Sbjct: 15 FNITEDMLRGIFEPFGKI--DNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL 72
>pdb|2KXF|A Chain A, Solution Structure Of The First Two Rrm Domains Of
Fbp-Interacting Repressor (Fir)
pdb|2KXH|A Chain A, Solution Structure Of The First Two Rrm Domains Of Fir In
The Complex With Fbp Nbox Peptide
Length = 199
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 15/80 (18%)
Query: 82 IRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFA 141
I+ ++ G IK L DP T K GY FIEY Q ++ A + +
Sbjct: 127 IKSVFEAFGKIKSCTLAR--DPTTGKHKGYGFIEYEKAQSSQDA-------------VSS 171
Query: 142 VNMFDDFDKFMKVPDEWAPP 161
+N+FD ++++V PP
Sbjct: 172 MNLFDLGGQYLRVGKAVTPP 191
>pdb|1H6K|Z Chain Z, Nuclear Cap Binding Complex
pdb|1H6K|X Chain X, Nuclear Cap Binding Complex
pdb|1H6K|Y Chain Y, Nuclear Cap Binding Complex
Length = 98
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 75 FEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134
F E I +++S+ G IK+ + M +D + + + G+CF+EY + +AE A NG +L
Sbjct: 28 FYTTEEQIYELFSKSGDIKK--IIMGLD-KMKTACGFCFVEYYSRADAENAMRYINGTRL 84
Query: 135 D 135
D
Sbjct: 85 D 85
>pdb|2CPF|A Chain A, Solution Structure Of The Penultimate Rna Recognition
Motif Of Hypothetical Rna-Binding Protein Rbm19
Length = 98
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 9/66 (13%)
Query: 75 FEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQK-----SLGYCFIEYNTPQEAELAKEKT 129
F E ++ ++S++G IK + + K S+G+ F+EY P++A+ A ++
Sbjct: 15 FSTTEETLKGVFSKVGAIKS----CTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQL 70
Query: 130 NGYKLD 135
G+ +D
Sbjct: 71 QGHTVD 76
>pdb|1FXL|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The C-Fos
Rna
pdb|1G2E|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The Tumor
Necrosis Factor Alpha Rna
Length = 167
Score = 33.5 bits (75), Expect = 0.43, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 10/79 (12%)
Query: 62 IVVDNLPV-VPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQ 120
++V+ LP + +E+F L G I +I S + D T +SLGY F+ Y P+
Sbjct: 5 LIVNYLPQNMTQEEFRSLFGSIGEIES---------CKLVRDKITGQSLGYGFVNYIDPK 55
Query: 121 EAELAKEKTNGYKLDRAHI 139
+AE A NG +L I
Sbjct: 56 DAEKAINTLNGLRLQTKTI 74
>pdb|1X5S|A Chain A, Solution Structure Of Rrm Domain In A18 Hnrnp
Length = 102
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 75 FEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134
F+ E + +++S+ G I E + + D ETQ+S G+ F+ + +A+ A NG +
Sbjct: 22 FDTNEQSLEQVFSKYGQISE--VVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 79
Query: 135 DRAHI 139
D I
Sbjct: 80 DGRQI 84
>pdb|3HI9|A Chain A, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
pdb|3HI9|B Chain B, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
pdb|3HI9|C Chain C, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
pdb|3HI9|D Chain D, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
Length = 84
Score = 33.1 bits (74), Expect = 0.59, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 82 IRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139
+R ++S IG ++ L D SLGY F+ Y T ++AE A NG +L I
Sbjct: 21 LRSLFSSIGEVESAKLIR--DKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTI 76
>pdb|4A8X|A Chain A, Structure Of The Core Asap Complex
Length = 88
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 82 IRKIYSQIGVIKEDGLWMPVDP-ETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIF 140
I +I+S G IK + MPV+ S GY ++E+ P EAE A + +G ++D I
Sbjct: 21 IMEIFSTYGKIKM--IDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEIT 78
Query: 141 AVNMF 145
A +
Sbjct: 79 ATAVL 83
>pdb|4FXV|A Chain A, Crystal Structure Of An Elav-Like Protein 1 (Elavl1) From
Homo Sapiens At 1.90 A Resolution
pdb|4FXV|B Chain B, Crystal Structure Of An Elav-Like Protein 1 (Elavl1) From
Homo Sapiens At 1.90 A Resolution
pdb|4FXV|C Chain C, Crystal Structure Of An Elav-Like Protein 1 (Elavl1) From
Homo Sapiens At 1.90 A Resolution
pdb|4FXV|D Chain D, Crystal Structure Of An Elav-Like Protein 1 (Elavl1) From
Homo Sapiens At 1.90 A Resolution
Length = 99
Score = 32.7 bits (73), Expect = 0.65, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 82 IRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139
+R ++S IG ++ L D SLGY F+ Y T ++AE A NG +L I
Sbjct: 36 LRSLFSSIGEVESAKLIR--DKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTI 91
>pdb|1D8Z|A Chain A, Solution Structure Of The First Rna-Binding Domain (Rbd1)
Of Hu Antigen C (Huc)
Length = 89
Score = 32.3 bits (72), Expect = 0.85, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 10/79 (12%)
Query: 62 IVVDNLPV-VPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQ 120
++V+ LP + +++F+ L G I I S + D T +SLGY F+ Y+ P
Sbjct: 7 LIVNYLPQNMTQDEFKSLFGSIGDIES---------CKLVRDKITGQSLGYGFVNYSDPN 57
Query: 121 EAELAKEKTNGYKLDRAHI 139
+A+ A NG KL I
Sbjct: 58 DADKAINTLNGLKLQTKTI 76
>pdb|1HL6|A Chain A, A Novel Mode Of Rbd-Protein Recognition In The Y14-Mago
Complex
pdb|1HL6|C Chain C, A Novel Mode Of Rbd-Protein Recognition In The Y14-Mago
Complex
pdb|1RK8|A Chain A, Structure Of The Cytosolic Protein Pym Bound To The Mago-
Y14 Core Of The Exon Junction Complex
pdb|2X1G|A Chain A, Crystal Structure Of Importin13 - Mago-Y14 Complex
pdb|2X1G|C Chain C, Crystal Structure Of Importin13 - Mago-Y14 Complex
Length = 165
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 76 EKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134
E E I++ + G IK + + +D T S GY +EY T ++A AKE NG ++
Sbjct: 83 EAQEDEIQEKFCDYGEIK--NIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI 139
>pdb|1FNX|H Chain H, Solution Structure Of The Huc Rbd1-Rbd2 Complexed With The
Au-Rich Element
Length = 174
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 10/79 (12%)
Query: 62 IVVDNLPV-VPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQ 120
++V+ LP + +++F+ L G I I S + D T +SLGY F+ Y+ P
Sbjct: 7 LIVNYLPQNMTQDEFKSLFGSIGDIES---------CKLVRDKITGQSLGYGFVNYSDPN 57
Query: 121 EAELAKEKTNGYKLDRAHI 139
+A+ A NG KL I
Sbjct: 58 DADKAINTLNGLKLQTKTI 76
>pdb|2DNM|A Chain A, Solution Structure Of Rna Binding Domain In Srp46 Splicing
Factor
Length = 103
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 82 IRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135
+R+++ + G + + +++P +P T+ G+ F+ ++ ++A+ A+ +G +LD
Sbjct: 30 LRRVFEKYGRVGD--VYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELD 81
>pdb|1OO0|B Chain B, Crystal Structure Of The Drosophila Mago Nashi-Y14 Complex
Length = 110
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 76 EKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134
E E I++ + G IK + + +D T S GY +EY T ++A AKE NG ++
Sbjct: 37 EAQEDEIQEKFCDYGEIK--NIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI 93
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 19/96 (19%)
Query: 214 WTESFVQWSPLGTYLAT-VHRQGAAVWG---GANTFNRLMRYAHPQVKLIDFSPGEKYLV 269
WT +F SP YLAT H ++G G ++ R + I +SP KYL
Sbjct: 126 WTLAF---SPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKF--ILSIAYSPDGKYL- 179
Query: 270 TYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSA 305
S D +INIFD+ TGK++ +G A
Sbjct: 180 ------ASGAIDG---IINIFDIATGKLLHTLEGHA 206
>pdb|1IRX|A Chain A, Crystal Structure Of Class I Lysyl-Trna Synthetase
pdb|1IRX|B Chain B, Crystal Structure Of Class I Lysyl-Trna Synthetase
Length = 523
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 128 KTNGYKLDRAHIFAVNMFDDFDKFMKVPDEWAPPEHKPYTP---GENLQKWLTDEKARDQ 184
+ GY++ H M+DD+D+F KVP P E K Y E W E +
Sbjct: 53 RDKGYEVRHIH-----MWDDYDRFRKVPRN-VPQEWKDYLGMPISEVPDPWGCHESYAEH 106
Query: 185 FVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESF 218
F+ + + E L + L +YKR ++E
Sbjct: 107 FMRKFEEEVEKLGIEVDLLYASELYKRGEYSEEI 140
>pdb|1P1T|A Chain A, Nmr Structure Of The N-Terminal Rrm Domain Of Cleavage
Stimulation Factor 64 Kda Subunit
Length = 104
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 62 IVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQE 121
+ V N+P +E E ++ I+S++G + + D ET K GY F EY +
Sbjct: 11 VFVGNIP------YEATEEQLKDIFSEVGPVVS--FRLVYDRETGKPKGYGFCEYQDQET 62
Query: 122 AELAKEKTNG 131
A A NG
Sbjct: 63 ALSAMRNLNG 72
>pdb|2CQB|A Chain A, Solution Structure Of The Rna Recognition Motif In
Peptidyl- Prolyl Cis-Trans Isomerase E
Length = 102
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 97 LWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134
+ +P+D ET+K G+ F+E+ ++A A + N +L
Sbjct: 42 IQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL 79
>pdb|1WHW|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain
From Hypothetical Protein Bab23448
Length = 99
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 82 IRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNG 131
+ K++S G + E L P+D T+K G+ F+ + P+ A A + +G
Sbjct: 25 LEKLFSAYGPLSE--LHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDG 72
>pdb|1CVJ|A Chain A, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|B Chain B, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|C Chain C, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|D Chain D, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|E Chain E, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|F Chain F, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|G Chain G, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|H Chain H, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
Length = 190
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 11/85 (12%)
Query: 56 SGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIE 115
SG GNI + + + + I S V E+G S GY F+
Sbjct: 96 SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-----------SKGYGFVH 144
Query: 116 YNTPQEAELAKEKTNGYKLDRAHIF 140
+ T + AE A EK NG L+ +F
Sbjct: 145 FETQEAAERAIEKMNGMLLNDRKVF 169
>pdb|2KU7|A Chain A, Solution Structure Of Mll1 Phd3-Cyp33 Rrm Chimeric Protein
Length = 140
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 99 MPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134
+P+D ET+K G+ F+E+ ++A A + N +L
Sbjct: 95 IPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL 130
>pdb|4F02|A Chain A, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
pdb|4F02|D Chain D, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
Length = 213
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 11/85 (12%)
Query: 56 SGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIE 115
SG GNI + + + + I S V E+G S GY F+
Sbjct: 101 SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-----------SKGYGFVH 149
Query: 116 YNTPQEAELAKEKTNGYKLDRAHIF 140
+ T + AE A EK NG L+ +F
Sbjct: 150 FETQEAAERAIEKMNGMLLNDRKVF 174
>pdb|4F25|A Chain A, Crystal Structure Of The Second Rrm Domain Of Human Pabpc1
At Ph 6.0
pdb|4F26|A Chain A, Crystal Structure Of The Second Rrm Domain Of Human Pabpc1
A Ph 9.0
Length = 115
Score = 30.0 bits (66), Expect = 5.1, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 108 SLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIF 140
S GY F+ + T + AE A EK NG L+ +F
Sbjct: 44 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 76
>pdb|1X5T|A Chain A, Solution Structure Of The Second Rrm Domain In Splicing
Factor 3b
Length = 96
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 79 EGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134
E ++ +S GVI + M DP+T S GY FI + + ++ A E NG L
Sbjct: 19 EKLLYDTFSAFGVILQTPKIMR-DPDTGNSKGYAFINFASFDASDAAIEAMNGQYL 73
>pdb|2K8G|A Chain A, Solution Structure Of Rrm2 Domain Of Pabp1
Length = 95
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 108 SLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIF 140
S GY F+ + T + AE A EK NG L+ +F
Sbjct: 50 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 82
>pdb|1V9D|A Chain A, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|B Chain B, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|C Chain C, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|D Chain D, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
Length = 340
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 26/61 (42%)
Query: 116 YNTPQEAELAKEKTNGYKLDRAHIFAVNMFDDFDKFMKVPDEWAPPEHKPYTPGENLQKW 175
+N +L K+ K+ H A +D + +K PDE A E ENLQK
Sbjct: 159 FNISFLCKLRDTKSADQKMTLLHFLAELCENDHPEVLKFPDELAHVEKASRVSAENLQKS 218
Query: 176 L 176
L
Sbjct: 219 L 219
>pdb|1EFH|A Chain A, Crystal Structure Of The Human Hydroxysteroid
Sulfotransferase In The Presence Of Pap
pdb|1EFH|B Chain B, Crystal Structure Of The Human Hydroxysteroid
Sulfotransferase In The Presence Of Pap
Length = 292
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 18/67 (26%)
Query: 177 TDEKARDQFVIR-----------SGTD--TEVLW-----NDARHLKPEPVYKRSYWTESF 218
T K RD+FVIR SGT+ E+L DA+ ++ P+++RS W ES
Sbjct: 22 TLRKVRDEFVIRDEDVIILTYPKSGTNWLAEILCLMHSKGDAKWIQSVPIWERSPWVESE 81
Query: 219 VQWSPLG 225
+ ++ L
Sbjct: 82 IGYTALS 88
>pdb|3MDF|A Chain A, Crystal Structure Of The Rrm Domain Of Cyclophilin 33
pdb|3MDF|B Chain B, Crystal Structure Of The Rrm Domain Of Cyclophilin 33
Length = 85
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 99 MPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134
+P+D ET+K G+ F+E+ ++A A + N +L
Sbjct: 39 IPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL 74
>pdb|3OBV|E Chain E, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|F Chain F, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|G Chain G, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|H Chain H, Autoinhibited Formin Mdia1 Structure
Length = 457
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 26/61 (42%)
Query: 116 YNTPQEAELAKEKTNGYKLDRAHIFAVNMFDDFDKFMKVPDEWAPPEHKPYTPGENLQKW 175
+N +L K+ K+ H A +D + +K PDE A E ENLQK
Sbjct: 230 FNISFLCKLRDTKSADQKMTLLHFLAELCENDHPEVLKFPDELAHVEKASRVSAENLQKS 289
Query: 176 L 176
L
Sbjct: 290 L 290
>pdb|2KYX|A Chain A, Solution Structure Of The Rrm Domain Of Cyp33
Length = 83
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 99 MPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134
+P+D ET+K G+ F+E+ ++A A + N +L
Sbjct: 37 IPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL 72
>pdb|3LPY|A Chain A, Crystal Structure Of The Rrm Domain Of Cyp33
pdb|3LPY|B Chain B, Crystal Structure Of The Rrm Domain Of Cyp33
Length = 79
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 99 MPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134
+P+D ET+K G+ F+E+ ++A A + N +L
Sbjct: 34 IPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL 69
>pdb|1U6F|A Chain A, Nmr Solution Structure Of Tcubp1, A Single Rbd-Unit From
Trypanosoma Cruzi
Length = 139
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 82 IRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134
+R+++ + G I + + + D ET++S GY F+++ + A+ A NG+ +
Sbjct: 59 LRQLFERYGPI--ESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNI 109
>pdb|3O4X|E Chain E, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|H Chain H, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|G Chain G, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|F Chain F, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
Length = 467
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 26/61 (42%)
Query: 116 YNTPQEAELAKEKTNGYKLDRAHIFAVNMFDDFDKFMKVPDEWAPPEHKPYTPGENLQKW 175
+N +L K+ K+ H A +D + +K PDE A E ENLQK
Sbjct: 249 FNISFLCKLRDTKSADQKMTLLHFLAELCENDHPEVLKFPDELAHVEKASRVSAENLQKS 308
Query: 176 L 176
L
Sbjct: 309 L 309
>pdb|3EX7|B Chain B, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|G Chain G, The Crystal Structure Of Ejc In Its Transition State
Length = 126
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 76 EKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134
E E I +++ G IK + + +D T GY +EY T +EA+ A E NG L
Sbjct: 33 EATEEDIHDKFAEYGEIK--NIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL 89
>pdb|4IFB|A Chain A, Crystal Structure Of Sult 2a1 Llgg Mutant With Paps
pdb|4IFB|B Chain B, Crystal Structure Of Sult 2a1 Llgg Mutant With Paps
Length = 285
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 18/67 (26%)
Query: 177 TDEKARDQFVIR-----------SGTD--TEVLW-----NDARHLKPEPVYKRSYWTESF 218
T K RD+FVIR SGT+ E+L DA+ ++ P+++RS W ES
Sbjct: 22 TLRKVRDEFVIRDEDVIILTYPKSGTNWLAEILCLMHSKGDAKWIQSVPIWERSPWVESE 81
Query: 219 VQWSPLG 225
+ ++ L
Sbjct: 82 IGYTALS 88
>pdb|2FC8|A Chain A, Solution Structure Of The Rrm_1 Domain Of Ncl Protein
Length = 102
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 101 VDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135
D ET S G+ F+++N+ ++A+ AKE ++D
Sbjct: 46 TDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 80
>pdb|3F3Y|A Chain A, Crystal Structure Of Human Cytosolic Sulfotransferase
Sult2a1 In Complex With Pap And Lithocholic Acid
pdb|3F3Y|B Chain B, Crystal Structure Of Human Cytosolic Sulfotransferase
Sult2a1 In Complex With Pap And Lithocholic Acid
pdb|3F3Y|C Chain C, Crystal Structure Of Human Cytosolic Sulfotransferase
Sult2a1 In Complex With Pap And Lithocholic Acid
pdb|3F3Y|D Chain D, Crystal Structure Of Human Cytosolic Sulfotransferase
Sult2a1 In Complex With Pap And Lithocholic Acid
Length = 285
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 18/67 (26%)
Query: 177 TDEKARDQFVIR-----------SGTD--TEVLW-----NDARHLKPEPVYKRSYWTESF 218
T K RD+FVIR SGT+ E+L DA+ ++ P+++RS W ES
Sbjct: 22 TLRKVRDEFVIRDEDVIILTYPKSGTNWLAEILCLMHSKGDAKWIQSVPIWERSPWVESE 81
Query: 219 VQWSPLG 225
+ ++ L
Sbjct: 82 IGYTALS 88
>pdb|1OV4|A Chain A, Crystal Structure Of Human Dhea-st Complexed With
Androsterone
Length = 293
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 18/67 (26%)
Query: 177 TDEKARDQFVIR-----------SGTD--TEVLW-----NDARHLKPEPVYKRSYWTESF 218
T K RD+FVIR SGT+ E+L DA+ ++ P+++RS W ES
Sbjct: 30 TLRKVRDEFVIRDEDVIILTYPKSGTNWLAEILCLMHSKGDAKWIQSVPIWERSPWVESE 89
Query: 219 VQWSPLG 225
+ ++ L
Sbjct: 90 IGYTALS 96
>pdb|1P27|B Chain B, Crystal Structure Of The Human Y14MAGOH COMPLEX
pdb|1P27|D Chain D, Crystal Structure Of The Human Y14MAGOH COMPLEX
Length = 106
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 76 EKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134
E E I +++ G IK + + +D T GY +EY T +EA+ A E NG L
Sbjct: 34 EATEEDIHDKFAEYGEIKN--IHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL 90
>pdb|2QP3|A Chain A, Identification And Characterization Of Two Amino Acids
Critical For The Substrate Inhibition Of Sult2a1
Length = 284
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 18/67 (26%)
Query: 177 TDEKARDQFVIR-----------SGTD--TEVLW-----NDARHLKPEPVYKRSYWTESF 218
T K RD+FVIR SGT+ E+L DA+ ++ P+++RS W ES
Sbjct: 21 TLRKVRDEFVIRDEDVIILTYPKSGTNWLAEILCLMHSKGDAKWIQSVPIWERSPWVESE 80
Query: 219 VQWSPLG 225
+ ++ L
Sbjct: 81 IGYTALS 87
>pdb|1J99|A Chain A, Crystal Structure Of Human Dehydroepiandrosterone
Sulfotransferase In Complex With Substrate
Length = 293
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 18/67 (26%)
Query: 177 TDEKARDQFVIR-----------SGTD--TEVLW-----NDARHLKPEPVYKRSYWTESF 218
T K RD+FVIR SGT+ E+L DA+ ++ P+++RS W ES
Sbjct: 30 TLRKVRDEFVIRDEDVIILTYPKSGTNWLAEILCLMHSKGDAKWIQSVPIWERSPWVESE 89
Query: 219 VQWSPLG 225
+ ++ L
Sbjct: 90 IGYTALS 96
>pdb|2QP4|A Chain A, Identification And Characterization Of Two Amino Acids
Critical For The Substrate Inhibition Of Sult2a1
Length = 284
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 18/67 (26%)
Query: 177 TDEKARDQFVIR-----------SGTD--TEVLW-----NDARHLKPEPVYKRSYWTESF 218
T K RD+FVIR SGT+ E+L DA+ ++ P+++RS W ES
Sbjct: 21 TLRKVRDEFVIRDEDVIILTYPKSGTNWLAEILCLMHSKGDAKWIQSVPIWERSPWVESE 80
Query: 219 VQWSPLG 225
+ ++ L
Sbjct: 81 IGYTALS 87
>pdb|2J0Q|D Chain D, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|G Chain G, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
Length = 109
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 76 EKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134
E E I +++ G IK + + +D T GY +EY T +EA+ A E NG L
Sbjct: 18 EATEEDIHDKFAEYGEIKN--IHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL 74
>pdb|2J0S|D Chain D, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 89
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 76 EKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134
E E I +++ G IK + + +D T GY +EY T +EA+ A E NG L
Sbjct: 18 EATEEDIHDKFAEYGEIKN--IHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,859,456
Number of Sequences: 62578
Number of extensions: 968429
Number of successful extensions: 2607
Number of sequences better than 100.0: 77
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 2545
Number of HSP's gapped (non-prelim): 95
length of query: 712
length of database: 14,973,337
effective HSP length: 106
effective length of query: 606
effective length of database: 8,340,069
effective search space: 5054081814
effective search space used: 5054081814
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)