Query 005140
Match_columns 712
No_of_seqs 886 out of 5019
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 18:43:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005140.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005140hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2314 Translation initiation 100.0 1E-103 3E-108 768.2 48.9 665 25-712 21-696 (698)
2 COG5354 Uncharacterized protei 100.0 1.9E-47 4.2E-52 372.0 30.9 501 183-711 3-559 (561)
3 KOG0271 Notchless-like WD40 re 100.0 7.9E-42 1.7E-46 320.7 25.2 330 203-588 105-479 (480)
4 KOG2315 Predicted translation 100.0 1.5E-37 3.2E-42 307.2 37.7 402 183-613 3-414 (566)
5 KOG0271 Notchless-like WD40 re 100.0 2.2E-39 4.7E-44 304.3 23.1 312 253-624 114-476 (480)
6 KOG0272 U4/U6 small nuclear ri 100.0 1.6E-36 3.5E-41 289.1 23.9 275 211-588 173-458 (459)
7 KOG0318 WD40 repeat stress pro 100.0 2.1E-34 4.7E-39 281.6 38.1 392 190-623 37-554 (603)
8 KOG0318 WD40 repeat stress pro 100.0 5.9E-34 1.3E-38 278.5 37.3 394 181-625 158-598 (603)
9 KOG0291 WD40-repeat-containing 100.0 4.4E-33 9.6E-38 283.2 37.9 396 166-623 52-544 (893)
10 KOG0286 G-protein beta subunit 100.0 1.2E-33 2.6E-38 257.1 30.1 279 207-588 49-343 (343)
11 KOG0319 WD40-repeat-containing 100.0 2.6E-33 5.7E-38 284.8 31.2 426 184-658 163-643 (775)
12 KOG0306 WD40-repeat-containing 100.0 2.5E-32 5.4E-37 277.6 35.4 399 180-629 75-664 (888)
13 KOG0273 Beta-transducin family 100.0 9.3E-33 2E-37 266.8 29.3 318 211-590 176-523 (524)
14 KOG0272 U4/U6 small nuclear ri 100.0 9.1E-34 2E-38 270.3 17.9 271 254-626 176-457 (459)
15 KOG0291 WD40-repeat-containing 100.0 7.9E-31 1.7E-35 266.9 38.0 358 181-594 276-713 (893)
16 KOG0279 G protein beta subunit 100.0 1.6E-30 3.6E-35 235.4 29.0 281 207-590 9-313 (315)
17 KOG0315 G-protein beta subunit 100.0 5.6E-30 1.2E-34 227.9 28.6 272 225-594 10-293 (311)
18 KOG0286 G-protein beta subunit 100.0 5.3E-30 1.2E-34 233.4 28.4 276 247-625 49-341 (343)
19 KOG0279 G protein beta subunit 100.0 1.3E-29 2.9E-34 229.6 28.6 272 179-545 25-313 (315)
20 KOG0273 Beta-transducin family 100.0 1.2E-29 2.7E-34 245.3 28.9 311 178-545 187-523 (524)
21 KOG0319 WD40-repeat-containing 100.0 5.6E-30 1.2E-34 260.6 26.3 391 175-625 111-531 (775)
22 KOG0306 WD40-repeat-containing 100.0 3.7E-29 8E-34 254.7 29.3 329 174-594 327-668 (888)
23 KOG0293 WD40 repeat-containing 100.0 4.1E-30 8.9E-35 244.3 20.8 286 203-590 214-513 (519)
24 KOG0645 WD40 repeat protein [G 100.0 2.5E-28 5.4E-33 220.4 29.6 283 205-590 6-311 (312)
25 KOG0315 G-protein beta subunit 100.0 2E-28 4.3E-33 218.1 28.0 287 185-563 13-308 (311)
26 KOG0296 Angio-associated migra 100.0 1.8E-28 3.8E-33 230.2 28.9 316 181-590 75-398 (399)
27 KOG0265 U5 snRNP-specific prot 100.0 4.1E-28 8.9E-33 222.1 27.9 288 203-587 37-335 (338)
28 KOG0282 mRNA splicing factor [ 100.0 1.2E-29 2.7E-34 246.4 18.2 287 203-588 204-503 (503)
29 KOG0284 Polyadenylation factor 100.0 1.9E-29 4.1E-34 239.8 18.1 274 213-590 96-380 (464)
30 KOG1407 WD40 repeat protein [F 100.0 4.7E-28 1E-32 217.3 25.5 284 207-545 14-311 (313)
31 KOG0295 WD40 repeat-containing 100.0 4.1E-28 8.8E-33 227.6 23.1 303 196-589 93-405 (406)
32 KOG0263 Transcription initiati 100.0 9.2E-29 2E-33 254.8 20.0 266 213-590 378-649 (707)
33 KOG0295 WD40 repeat-containing 100.0 7.5E-28 1.6E-32 225.8 23.5 307 154-544 90-405 (406)
34 cd00200 WD40 WD40 domain, foun 100.0 8.4E-27 1.8E-31 235.6 33.3 279 207-588 3-289 (289)
35 KOG0284 Polyadenylation factor 100.0 1.8E-28 4E-33 233.1 17.0 272 178-496 105-380 (464)
36 KOG0296 Angio-associated migra 100.0 2.4E-27 5.2E-32 222.6 24.2 323 204-623 55-392 (399)
37 KOG0266 WD40 repeat-containing 100.0 5.6E-27 1.2E-31 249.6 29.7 281 211-590 157-454 (456)
38 PLN00181 protein SPA1-RELATED; 100.0 6.4E-26 1.4E-30 260.1 36.6 285 209-589 479-792 (793)
39 KOG2106 Uncharacterized conser 99.9 1.9E-24 4.1E-29 211.0 35.7 399 174-624 57-516 (626)
40 PF08662 eIF2A: Eukaryotic tra 99.9 3.5E-26 7.5E-31 213.1 22.3 190 406-604 2-193 (194)
41 KOG1539 WD repeat protein [Gen 99.9 5.1E-25 1.1E-29 227.4 32.8 390 174-620 163-638 (910)
42 KOG0293 WD40 repeat-containing 99.9 1.7E-26 3.7E-31 219.8 18.9 274 252-626 223-510 (519)
43 KOG0292 Vesicle coat complex C 99.9 1.6E-24 3.6E-29 224.4 34.3 267 175-485 15-314 (1202)
44 KOG0645 WD40 repeat protein [G 99.9 4.5E-25 9.8E-30 199.4 26.1 282 297-624 6-306 (312)
45 KOG0285 Pleiotropic regulator 99.9 2E-25 4.3E-30 208.8 24.6 295 249-610 147-454 (460)
46 KOG0305 Anaphase promoting com 99.9 6.1E-25 1.3E-29 223.3 27.4 274 215-592 179-463 (484)
47 KOG1407 WD40 repeat protein [F 99.9 9.6E-25 2.1E-29 196.1 24.8 282 252-589 19-310 (313)
48 KOG2096 WD40 repeat protein [G 99.9 1.3E-24 2.9E-29 200.4 26.3 303 207-588 80-400 (420)
49 KOG0973 Histone transcription 99.9 3.4E-25 7.4E-30 236.4 25.9 289 211-592 11-357 (942)
50 KOG0282 mRNA splicing factor [ 99.9 1.3E-25 2.9E-30 218.5 19.2 285 164-543 199-503 (503)
51 KOG1408 WD40 repeat protein [F 99.9 1.3E-24 2.9E-29 219.9 26.7 233 362-624 461-708 (1080)
52 KOG0275 Conserved WD40 repeat- 99.9 1.2E-25 2.7E-30 207.3 17.0 274 213-588 213-507 (508)
53 KOG0263 Transcription initiati 99.9 6.4E-25 1.4E-29 226.5 24.2 201 208-497 446-650 (707)
54 KOG0265 U5 snRNP-specific prot 99.9 2.5E-24 5.4E-29 197.4 25.2 291 161-543 39-336 (338)
55 KOG0316 Conserved WD40 repeat- 99.9 3E-24 6.6E-29 189.9 24.0 268 252-621 16-292 (307)
56 KOG0292 Vesicle coat complex C 99.9 2E-24 4.4E-29 223.7 26.7 308 209-589 5-320 (1202)
57 KOG0643 Translation initiation 99.9 4.3E-24 9.2E-29 192.6 25.3 287 252-591 8-318 (327)
58 KOG0973 Histone transcription 99.9 9.2E-25 2E-29 233.2 24.7 279 177-546 21-356 (942)
59 cd00200 WD40 WD40 domain, foun 99.9 6.8E-24 1.5E-28 214.3 29.7 270 253-624 9-286 (289)
60 KOG0772 Uncharacterized conser 99.9 1.5E-24 3.2E-29 212.2 21.6 301 203-587 157-484 (641)
61 KOG1446 Histone H3 (Lys4) meth 99.9 6.4E-23 1.4E-27 190.3 31.0 286 203-590 4-303 (311)
62 KOG2106 Uncharacterized conser 99.9 2.4E-23 5.3E-28 203.3 28.5 416 107-589 153-625 (626)
63 KOG0266 WD40 repeat-containing 99.9 9E-24 2E-28 225.0 27.6 276 172-495 162-453 (456)
64 KOG0278 Serine/threonine kinas 99.9 1.2E-24 2.7E-29 194.0 17.3 279 206-590 7-297 (334)
65 KOG0310 Conserved WD40 repeat- 99.9 1.2E-23 2.6E-28 205.4 24.7 277 211-588 24-307 (487)
66 KOG1063 RNA polymerase II elon 99.9 5.5E-23 1.2E-27 208.4 29.4 388 191-624 33-643 (764)
67 KOG0316 Conserved WD40 repeat- 99.9 4.5E-23 9.7E-28 182.6 25.1 275 205-587 9-296 (307)
68 KOG0276 Vesicle coat complex C 99.9 1.1E-22 2.4E-27 203.5 30.7 380 184-621 69-483 (794)
69 KOG0268 Sof1-like rRNA process 99.9 8.6E-24 1.9E-28 198.5 21.3 279 205-590 58-345 (433)
70 KOG0276 Vesicle coat complex C 99.9 2.7E-23 5.8E-28 207.9 25.6 356 206-623 6-411 (794)
71 KOG0285 Pleiotropic regulator 99.9 1.8E-23 3.8E-28 195.9 22.7 295 197-545 137-439 (460)
72 PLN00181 protein SPA1-RELATED; 99.9 5.5E-23 1.2E-27 235.9 31.3 287 234-624 457-788 (793)
73 KOG0643 Translation initiation 99.9 6E-23 1.3E-27 185.2 24.5 289 207-545 4-317 (327)
74 KOG0275 Conserved WD40 repeat- 99.9 3.6E-24 7.9E-29 197.6 17.0 276 255-625 215-505 (508)
75 KOG0305 Anaphase promoting com 99.9 3.6E-23 7.7E-28 210.5 25.5 266 184-497 190-462 (484)
76 KOG0288 WD40 repeat protein Ti 99.9 1.8E-23 3.9E-28 199.7 15.9 284 204-588 166-459 (459)
77 KOG0283 WD40 repeat-containing 99.9 9.2E-23 2E-27 212.7 21.6 246 209-545 262-576 (712)
78 KOG2055 WD40 repeat protein [G 99.9 3.8E-22 8.1E-27 193.3 24.2 285 213-590 213-512 (514)
79 KOG1539 WD repeat protein [Gen 99.9 2.3E-21 4.9E-26 200.7 31.2 396 187-625 129-602 (910)
80 KOG0299 U3 snoRNP-associated p 99.9 5.8E-22 1.3E-26 192.2 24.2 277 206-576 135-446 (479)
81 KOG2314 Translation initiation 99.9 4.4E-21 9.5E-26 189.8 30.2 315 256-619 213-557 (698)
82 KOG1446 Histone H3 (Lys4) meth 99.9 6.8E-21 1.5E-25 177.0 28.8 263 255-619 16-295 (311)
83 KOG0278 Serine/threonine kinas 99.9 4.5E-23 9.7E-28 184.1 13.2 272 252-626 13-294 (334)
84 KOG0641 WD40 repeat protein [G 99.9 1.1E-20 2.3E-25 166.3 27.3 274 247-623 25-343 (350)
85 KOG0277 Peroxisomal targeting 99.9 1E-21 2.3E-26 176.0 21.1 272 217-589 12-308 (311)
86 KOG0313 Microtubule binding pr 99.9 7.4E-22 1.6E-26 186.8 21.1 300 244-624 95-413 (423)
87 KOG0281 Beta-TrCP (transducin 99.9 1.5E-22 3.4E-27 188.7 15.8 266 254-591 198-478 (499)
88 KOG2048 WD40 repeat protein [G 99.9 7.2E-20 1.6E-24 185.8 36.0 438 139-617 39-536 (691)
89 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.7E-20 8E-25 189.1 34.6 282 225-609 1-300 (300)
90 KOG1063 RNA polymerase II elon 99.9 8.8E-21 1.9E-25 192.6 29.0 386 187-610 164-675 (764)
91 KOG0640 mRNA cleavage stimulat 99.9 1E-21 2.3E-26 180.6 19.8 284 207-589 106-425 (430)
92 PTZ00420 coronin; Provisional 99.9 6E-21 1.3E-25 202.9 28.6 251 192-524 54-318 (568)
93 KOG0310 Conserved WD40 repeat- 99.9 2.5E-21 5.5E-26 189.2 22.9 269 253-623 26-303 (487)
94 KOG0313 Microtubule binding pr 99.9 7.7E-21 1.7E-25 179.9 24.4 273 174-545 106-418 (423)
95 KOG0268 Sof1-like rRNA process 99.9 1.6E-22 3.5E-27 190.0 12.8 266 323-631 71-347 (433)
96 KOG0772 Uncharacterized conser 99.9 1.9E-21 4E-26 190.7 20.1 281 255-623 169-481 (641)
97 KOG0283 WD40 repeat-containing 99.9 3.7E-21 7.9E-26 200.8 23.2 238 254-591 268-577 (712)
98 KOG0289 mRNA splicing factor [ 99.9 1.7E-20 3.6E-25 180.5 25.6 285 248-589 214-505 (506)
99 KOG1273 WD40 repeat protein [G 99.9 1.6E-21 3.4E-26 180.0 16.6 272 248-617 18-311 (405)
100 KOG0647 mRNA export protein (c 99.9 3.3E-20 7.1E-25 170.7 25.1 272 211-575 25-313 (347)
101 KOG1274 WD40 repeat protein [G 99.9 1.7E-20 3.7E-25 196.6 26.2 263 252-613 12-284 (933)
102 KOG1408 WD40 repeat protein [F 99.9 1.7E-20 3.8E-25 190.4 25.2 319 175-591 330-714 (1080)
103 PTZ00421 coronin; Provisional 99.9 7.4E-20 1.6E-24 194.0 31.2 266 214-523 21-314 (493)
104 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.7E-19 8E-24 181.7 35.3 288 184-565 3-300 (300)
105 KOG4497 Uncharacterized conser 99.9 5.3E-21 1.1E-25 177.5 18.9 343 218-620 13-423 (447)
106 KOG0640 mRNA cleavage stimulat 99.9 1.9E-21 4.1E-26 179.0 14.0 275 323-628 117-425 (430)
107 KOG0639 Transducin-like enhanc 99.9 1.8E-20 3.9E-25 183.0 20.8 277 211-543 417-702 (705)
108 KOG1273 WD40 repeat protein [G 99.9 1.1E-19 2.3E-24 168.0 24.2 281 216-590 26-322 (405)
109 KOG0641 WD40 repeat protein [G 99.9 1.1E-18 2.4E-23 153.7 29.1 283 213-591 32-350 (350)
110 KOG0288 WD40 repeat protein Ti 99.9 2.8E-21 6.1E-26 184.8 13.8 271 248-623 170-455 (459)
111 KOG2096 WD40 repeat protein [G 99.9 7.1E-20 1.5E-24 169.4 22.4 279 298-619 79-393 (420)
112 KOG0646 WD40 repeat protein [G 99.9 6.4E-19 1.4E-23 171.6 29.6 286 229-610 11-330 (476)
113 KOG0289 mRNA splicing factor [ 99.9 1.4E-19 3.1E-24 174.1 24.0 268 184-544 232-505 (506)
114 KOG0294 WD40 repeat-containing 99.9 5.5E-19 1.2E-23 163.6 26.6 241 205-498 35-283 (362)
115 KOG2055 WD40 repeat protein [G 99.9 6E-20 1.3E-24 178.2 21.2 271 252-624 212-507 (514)
116 PTZ00421 coronin; Provisional 99.9 4.3E-19 9.3E-24 188.2 29.5 229 208-474 70-314 (493)
117 KOG1036 Mitotic spindle checkp 99.9 1.3E-18 2.9E-23 160.9 28.4 269 213-576 13-295 (323)
118 KOG0300 WD40 repeat-containing 99.9 7E-20 1.5E-24 169.1 19.9 285 204-590 139-476 (481)
119 KOG0281 Beta-TrCP (transducin 99.8 1.7E-20 3.7E-25 175.2 15.7 273 212-548 196-480 (499)
120 PTZ00420 coronin; Provisional 99.8 1.5E-18 3.3E-23 184.7 32.3 239 285-613 54-320 (568)
121 KOG0274 Cdc4 and related F-box 99.8 3.3E-19 7.1E-24 189.1 26.6 274 211-595 206-488 (537)
122 KOG0639 Transducin-like enhanc 99.8 1.2E-19 2.5E-24 177.4 19.6 263 183-495 431-703 (705)
123 KOG1538 Uncharacterized conser 99.8 2.7E-18 5.8E-23 173.4 29.6 270 171-496 14-293 (1081)
124 KOG0277 Peroxisomal targeting 99.8 1.4E-19 3E-24 162.5 17.1 291 108-495 9-308 (311)
125 KOG0650 WD40 repeat nucleolar 99.8 9.8E-19 2.1E-23 174.8 24.1 297 206-542 393-732 (733)
126 KOG1332 Vesicle coat complex C 99.8 2.9E-19 6.4E-24 159.5 16.8 246 255-545 13-286 (299)
127 KOG2048 WD40 repeat protein [G 99.8 3.1E-17 6.8E-22 166.9 33.5 383 172-618 28-447 (691)
128 KOG1445 Tumor-specific antigen 99.8 2.1E-18 4.5E-23 173.2 24.7 155 463-628 627-793 (1012)
129 KOG1274 WD40 repeat protein [G 99.8 3.1E-18 6.7E-23 179.8 26.2 269 211-575 11-290 (933)
130 KOG0650 WD40 repeat nucleolar 99.8 4.4E-19 9.6E-24 177.2 18.2 305 252-624 399-730 (733)
131 KOG1009 Chromatin assembly com 99.8 6.4E-18 1.4E-22 161.9 24.8 311 214-595 14-377 (434)
132 KOG4283 Transcription-coupled 99.8 1.1E-17 2.3E-22 153.5 24.8 295 210-589 40-364 (397)
133 KOG0300 WD40 repeat-containing 99.8 2.3E-18 5.1E-23 159.1 20.6 269 181-546 159-477 (481)
134 KOG0299 U3 snoRNP-associated p 99.8 5.1E-18 1.1E-22 165.0 22.7 275 252-617 141-443 (479)
135 KOG0647 mRNA export protein (c 99.8 1.6E-17 3.4E-22 153.2 24.0 276 170-532 28-313 (347)
136 KOG0294 WD40 repeat-containing 99.8 9.2E-18 2E-22 155.6 22.6 231 255-592 45-283 (362)
137 KOG0646 WD40 repeat protein [G 99.8 3.3E-17 7.1E-22 159.8 26.2 287 192-572 18-336 (476)
138 KOG1332 Vesicle coat complex C 99.8 7.2E-18 1.6E-22 150.7 19.3 248 209-496 7-286 (299)
139 KOG1538 Uncharacterized conser 99.8 6.1E-18 1.3E-22 170.8 21.1 273 255-592 14-295 (1081)
140 KOG1963 WD40 repeat protein [G 99.8 2.1E-16 4.5E-21 166.1 33.1 323 184-546 173-539 (792)
141 KOG0264 Nucleosome remodeling 99.8 5.5E-18 1.2E-22 164.9 19.8 252 247-594 117-408 (422)
142 KOG2919 Guanine nucleotide-bin 99.8 3E-17 6.4E-22 152.6 23.5 265 219-575 55-360 (406)
143 KOG0269 WD40 repeat-containing 99.8 5E-18 1.1E-22 174.9 17.9 269 216-575 42-330 (839)
144 KOG0308 Conserved WD40 repeat- 99.8 3.9E-18 8.4E-23 172.3 16.5 242 258-591 29-286 (735)
145 KOG0301 Phospholipase A2-activ 99.8 7.5E-17 1.6E-21 164.4 25.6 274 204-590 5-288 (745)
146 KOG0274 Cdc4 and related F-box 99.8 6.5E-17 1.4E-21 171.7 25.9 263 183-552 219-489 (537)
147 KOG0269 WD40 repeat-containing 99.8 1.3E-17 2.8E-22 171.9 19.6 233 214-485 88-332 (839)
148 KOG4497 Uncharacterized conser 99.8 3.3E-17 7.1E-22 152.5 20.2 323 184-575 63-422 (447)
149 KOG1009 Chromatin assembly com 99.8 7.5E-17 1.6E-21 154.6 21.6 306 176-550 20-377 (434)
150 KOG4378 Nuclear protein COP1 [ 99.8 7.9E-17 1.7E-21 157.7 21.4 285 187-567 7-305 (673)
151 KOG0308 Conserved WD40 repeat- 99.8 6.6E-17 1.4E-21 163.5 21.1 339 185-590 40-393 (735)
152 KOG2445 Nuclear pore complex c 99.8 5.3E-16 1.1E-20 143.5 24.7 252 253-545 12-318 (361)
153 KOG4283 Transcription-coupled 99.7 4.9E-16 1.1E-20 142.6 23.3 289 252-628 42-364 (397)
154 KOG2110 Uncharacterized conser 99.7 4.1E-15 8.9E-20 141.3 30.0 235 213-545 5-248 (391)
155 KOG1034 Transcriptional repres 99.7 1.6E-16 3.5E-21 148.1 20.2 311 210-589 35-382 (385)
156 KOG1036 Mitotic spindle checkp 99.7 7.8E-16 1.7E-20 142.8 23.7 273 170-532 14-294 (323)
157 KOG0307 Vesicle coat complex C 99.7 9.6E-17 2.1E-21 173.1 20.3 241 321-592 67-329 (1049)
158 KOG2919 Guanine nucleotide-bin 99.7 4.1E-16 8.9E-21 145.1 21.5 278 256-620 52-361 (406)
159 KOG0267 Microtubule severing p 99.7 8.8E-18 1.9E-22 171.7 11.0 238 236-575 16-258 (825)
160 KOG1034 Transcriptional repres 99.7 1.2E-15 2.6E-20 142.5 23.8 302 181-545 53-383 (385)
161 KOG2139 WD40 repeat protein [G 99.7 1.9E-15 4.1E-20 142.8 25.1 294 184-545 112-431 (445)
162 KOG4328 WD40 protein [Function 99.7 1.1E-15 2.5E-20 148.7 24.0 292 249-591 182-496 (498)
163 KOG1445 Tumor-specific antigen 99.7 6.7E-16 1.5E-20 155.4 22.5 156 411-588 629-796 (1012)
164 KOG0264 Nucleosome remodeling 99.7 4.9E-16 1.1E-20 151.5 20.9 245 179-496 134-404 (422)
165 KOG4378 Nuclear protein COP1 [ 99.7 6.7E-16 1.4E-20 151.3 21.9 281 227-611 5-305 (673)
166 COG5354 Uncharacterized protei 99.7 5.5E-15 1.2E-19 146.0 27.3 363 175-591 38-436 (561)
167 PRK03629 tolB translocation pr 99.7 3.5E-15 7.6E-20 158.3 27.5 241 285-610 179-428 (429)
168 KOG0301 Phospholipase A2-activ 99.7 2.1E-15 4.6E-20 153.9 24.1 254 185-545 28-288 (745)
169 PRK11028 6-phosphogluconolacto 99.7 7.5E-14 1.6E-18 144.1 34.3 274 184-497 4-305 (330)
170 PRK11028 6-phosphogluconolacto 99.7 4.8E-14 1E-18 145.6 32.8 271 231-590 9-304 (330)
171 KOG0321 WD40 repeat-containing 99.7 2.6E-15 5.6E-20 151.8 22.1 281 258-590 54-391 (720)
172 KOG0267 Microtubule severing p 99.7 6.4E-17 1.4E-21 165.5 10.0 214 184-430 41-259 (825)
173 PRK01742 tolB translocation pr 99.7 6.1E-15 1.3E-19 156.9 25.7 236 340-610 184-426 (429)
174 PRK05137 tolB translocation pr 99.7 2.9E-14 6.3E-19 152.4 30.9 249 341-610 183-433 (435)
175 COG2319 FOG: WD40 repeat [Gene 99.7 2E-13 4.4E-18 146.4 37.8 359 208-624 60-437 (466)
176 KOG1963 WD40 repeat protein [G 99.7 2.7E-14 5.9E-19 150.4 28.6 324 216-591 163-539 (792)
177 KOG1524 WD40 repeat-containing 99.7 1.8E-14 3.9E-19 142.7 25.4 232 146-432 45-279 (737)
178 KOG2315 Predicted translation 99.7 4.8E-14 1E-18 141.2 28.3 341 227-618 4-373 (566)
179 KOG0302 Ribosome Assembly prot 99.7 1.3E-15 2.9E-20 144.6 16.2 200 400-621 202-431 (440)
180 PRK01742 tolB translocation pr 99.7 1E-14 2.2E-19 155.2 24.9 233 192-474 184-426 (429)
181 PRK03629 tolB translocation pr 99.7 2E-14 4.3E-19 152.5 26.8 238 196-473 181-427 (429)
182 KOG4227 WD40 repeat protein [G 99.7 1E-14 2.2E-19 138.9 21.6 293 208-545 51-387 (609)
183 KOG0290 Conserved WD40 repeat- 99.7 1.9E-14 4E-19 132.3 22.4 288 213-542 44-362 (364)
184 COG4946 Uncharacterized protei 99.7 6.1E-13 1.3E-17 130.2 34.1 394 172-615 39-504 (668)
185 PF02239 Cytochrom_D1: Cytochr 99.7 2.5E-13 5.4E-18 139.6 33.6 313 225-591 5-348 (369)
186 COG2319 FOG: WD40 repeat [Gene 99.7 1.2E-12 2.6E-17 140.4 40.7 345 187-591 82-443 (466)
187 KOG2445 Nuclear pore complex c 99.7 6.3E-14 1.4E-18 129.9 25.6 251 210-496 10-318 (361)
188 KOG1524 WD40 repeat-containing 99.7 5E-15 1.1E-19 146.6 19.4 255 210-575 11-276 (737)
189 PRK02889 tolB translocation pr 99.7 2.8E-14 6.1E-19 151.6 26.7 246 340-610 176-425 (427)
190 PRK04922 tolB translocation pr 99.7 2.5E-14 5.4E-19 152.7 25.9 244 285-610 184-433 (433)
191 KOG4328 WD40 protein [Function 99.7 1.3E-14 2.8E-19 141.3 20.4 268 323-619 191-484 (498)
192 KOG0270 WD40 repeat-containing 99.7 5.4E-14 1.2E-18 136.7 24.5 291 218-550 130-454 (463)
193 PRK02889 tolB translocation pr 99.6 5.6E-14 1.2E-18 149.4 27.0 245 285-566 176-425 (427)
194 PRK05137 tolB translocation pr 99.6 9.2E-14 2E-18 148.5 27.6 245 285-566 182-433 (435)
195 PF02239 Cytochrom_D1: Cytochr 99.6 2.7E-13 5.9E-18 139.4 29.4 335 183-570 6-365 (369)
196 PRK04922 tolB translocation pr 99.6 1.1E-13 2.4E-18 147.7 27.6 242 236-565 186-432 (433)
197 KOG0321 WD40 repeat-containing 99.6 4.4E-14 9.6E-19 143.1 22.7 286 178-498 60-393 (720)
198 KOG0307 Vesicle coat complex C 99.6 3.7E-15 8.1E-20 161.0 14.3 244 215-548 66-330 (1049)
199 PRK01029 tolB translocation pr 99.6 6.3E-13 1.4E-17 140.5 30.0 252 285-567 165-426 (428)
200 KOG0302 Ribosome Assembly prot 99.6 9.6E-14 2.1E-18 132.1 20.7 202 256-497 154-379 (440)
201 KOG0322 G-protein beta subunit 99.6 7E-14 1.5E-18 126.8 17.8 291 249-589 10-322 (323)
202 KOG0771 Prolactin regulatory e 99.6 2.6E-13 5.7E-18 131.6 22.9 198 323-591 149-355 (398)
203 KOG2139 WD40 repeat protein [G 99.6 9.1E-13 2E-17 124.9 24.2 309 215-590 100-431 (445)
204 PRK04792 tolB translocation pr 99.6 8.9E-13 1.9E-17 140.5 27.5 247 341-610 199-447 (448)
205 PRK04792 tolB translocation pr 99.6 1.4E-12 3E-17 139.1 27.3 258 220-523 180-447 (448)
206 PLN03134 glycine-rich RNA-bind 99.6 2.5E-14 5.4E-19 125.2 10.6 81 57-146 32-112 (144)
207 PRK01029 tolB translocation pr 99.6 2.8E-12 6.1E-17 135.5 28.2 248 236-524 167-426 (428)
208 KOG0644 Uncharacterized conser 99.5 2.7E-14 5.9E-19 148.5 11.2 271 252-590 189-468 (1113)
209 KOG0644 Uncharacterized conser 99.5 3.6E-14 7.7E-19 147.6 12.1 278 205-547 182-470 (1113)
210 KOG1587 Cytoplasmic dynein int 99.5 2.4E-12 5.2E-17 135.9 25.5 261 236-545 224-516 (555)
211 KOG0771 Prolactin regulatory e 99.5 1.9E-13 4.1E-18 132.6 15.7 193 217-496 148-354 (398)
212 PRK00178 tolB translocation pr 99.5 2.9E-12 6.4E-17 137.3 26.8 247 341-610 180-428 (430)
213 KOG1007 WD repeat protein TSSC 99.5 3E-12 6.6E-17 117.8 22.3 255 207-545 57-361 (370)
214 PRK00178 tolB translocation pr 99.5 6.6E-12 1.4E-16 134.6 28.6 243 236-523 181-428 (430)
215 TIGR02800 propeller_TolB tol-p 99.5 7.2E-12 1.6E-16 134.2 26.7 242 285-608 170-417 (417)
216 TIGR02800 propeller_TolB tol-p 99.5 1.2E-11 2.7E-16 132.4 28.4 241 236-564 172-417 (417)
217 KOG0270 WD40 repeat-containing 99.5 1.5E-12 3.3E-17 126.8 18.6 228 184-449 194-450 (463)
218 PF10282 Lactonase: Lactonase, 99.5 3.9E-10 8.6E-15 116.4 37.8 288 235-563 14-345 (345)
219 PF08662 eIF2A: Eukaryotic tra 99.5 6.7E-13 1.5E-17 123.8 15.0 148 467-620 9-164 (194)
220 KOG2394 WD40 protein DMR-N9 [G 99.5 5.8E-12 1.3E-16 125.5 21.9 239 256-565 126-384 (636)
221 KOG0121 Nuclear cap-binding pr 99.5 1.4E-13 3E-18 109.9 7.1 80 56-144 33-112 (153)
222 COG2706 3-carboxymuconate cycl 99.5 7.7E-10 1.7E-14 106.3 33.7 289 185-500 6-325 (346)
223 KOG0117 Heterogeneous nuclear 99.5 2.3E-13 4.9E-18 132.3 9.8 98 57-162 81-180 (506)
224 TIGR02658 TTQ_MADH_Hv methylam 99.5 5E-10 1.1E-14 112.3 34.0 284 235-553 28-338 (352)
225 KOG2111 Uncharacterized conser 99.5 1.7E-10 3.6E-15 108.2 28.1 238 216-546 8-257 (346)
226 KOG0303 Actin-binding protein 99.5 1E-11 2.2E-16 119.2 20.6 204 208-449 76-295 (472)
227 KOG0290 Conserved WD40 repeat- 99.5 2.8E-11 6E-16 111.7 22.5 264 323-615 49-352 (364)
228 KOG1272 WD40-repeat-containing 99.5 7.9E-13 1.7E-17 129.3 13.2 256 217-575 133-399 (545)
229 KOG2394 WD40 protein DMR-N9 [G 99.5 1.8E-11 3.8E-16 122.1 22.7 136 463-609 219-384 (636)
230 KOG0642 Cell-cycle nuclear pro 99.4 9.4E-13 2E-17 132.0 13.7 243 252-592 293-563 (577)
231 KOG1007 WD repeat protein TSSC 99.4 1.5E-11 3.3E-16 113.3 20.0 195 170-394 64-288 (370)
232 KOG0122 Translation initiation 99.4 2.7E-13 5.8E-18 121.4 8.2 78 58-144 188-265 (270)
233 KOG3881 Uncharacterized conser 99.4 3.6E-11 7.8E-16 115.6 22.9 219 330-614 115-346 (412)
234 PF10282 Lactonase: Lactonase, 99.4 1.6E-09 3.4E-14 112.0 36.9 279 214-520 37-345 (345)
235 PRK04043 tolB translocation pr 99.4 9.5E-11 2.1E-15 123.0 27.8 209 193-431 168-389 (419)
236 KOG0131 Splicing factor 3b, su 99.4 3.3E-13 7.2E-18 115.2 7.5 82 56-146 6-87 (203)
237 KOG0126 Predicted RNA-binding 99.4 1.9E-14 4.2E-19 122.2 -0.2 81 58-147 34-114 (219)
238 KOG1517 Guanine nucleotide bin 99.4 4.3E-11 9.4E-16 128.3 24.7 289 216-591 1067-1382(1387)
239 KOG1188 WD40 repeat protein [G 99.4 2.2E-11 4.7E-16 115.0 19.8 286 183-545 41-346 (376)
240 KOG0649 WD40 repeat protein [G 99.4 9.3E-11 2E-15 105.5 22.3 258 253-616 10-302 (325)
241 KOG0111 Cyclophilin-type pepti 99.4 2.2E-13 4.7E-18 119.4 5.3 81 57-146 8-88 (298)
242 COG2706 3-carboxymuconate cycl 99.4 3.8E-09 8.2E-14 101.7 34.3 297 227-564 6-345 (346)
243 KOG0303 Actin-binding protein 99.4 1.1E-11 2.4E-16 118.9 17.0 183 182-392 93-291 (472)
244 KOG4227 WD40 repeat protein [G 99.4 4.2E-11 9E-16 114.6 20.7 280 253-588 55-385 (609)
245 KOG1517 Guanine nucleotide bin 99.4 3.4E-11 7.3E-16 129.1 21.7 285 256-623 1067-1375(1387)
246 KOG1310 WD40 repeat protein [G 99.4 8E-12 1.7E-16 124.6 15.5 161 203-393 40-229 (758)
247 KOG2321 WD40 repeat protein [G 99.4 1.3E-10 2.8E-15 116.9 23.6 277 211-575 49-333 (703)
248 KOG0642 Cell-cycle nuclear pro 99.4 4.7E-12 1E-16 127.1 13.5 252 208-549 289-565 (577)
249 KOG0322 G-protein beta subunit 99.4 1.7E-11 3.7E-16 111.6 15.9 287 203-544 4-322 (323)
250 KOG0149 Predicted RNA-binding 99.4 5.5E-13 1.2E-17 119.2 6.2 76 60-145 13-88 (247)
251 KOG2110 Uncharacterized conser 99.4 1.6E-10 3.5E-15 110.4 22.8 233 323-592 10-250 (391)
252 PF00076 RRM_1: RNA recognitio 99.4 1.7E-12 3.6E-17 99.9 7.9 69 62-140 1-69 (70)
253 KOG1188 WD40 repeat protein [G 99.4 5.1E-11 1.1E-15 112.6 18.6 268 226-589 41-345 (376)
254 KOG1587 Cytoplasmic dynein int 99.4 3E-10 6.6E-15 120.2 26.3 261 285-591 222-517 (555)
255 KOG1523 Actin-related protein 99.4 3.5E-11 7.7E-16 112.6 16.9 226 360-610 10-260 (361)
256 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 2.3E-12 5E-17 134.3 10.3 82 57-147 267-348 (352)
257 KOG1272 WD40-repeat-containing 99.3 2.9E-12 6.3E-17 125.4 9.5 251 254-611 130-391 (545)
258 PRK04043 tolB translocation pr 99.3 3.7E-10 8E-15 118.6 25.9 226 236-497 171-401 (419)
259 KOG1523 Actin-related protein 99.3 1.3E-10 2.9E-15 108.8 19.4 230 323-573 15-267 (361)
260 COG4946 Uncharacterized protei 99.3 2.8E-09 6E-14 105.1 28.8 181 221-431 327-510 (668)
261 KOG4207 Predicted splicing fac 99.3 1.6E-12 3.4E-17 113.1 5.8 76 60-144 14-89 (256)
262 TIGR01659 sex-lethal sex-letha 99.3 8.3E-12 1.8E-16 126.0 10.1 80 56-144 104-183 (346)
263 KOG2321 WD40 repeat protein [G 99.3 1E-10 2.3E-15 117.6 17.4 255 323-621 56-335 (703)
264 TIGR02658 TTQ_MADH_Hv methylam 99.3 1.3E-08 2.8E-13 102.2 32.3 267 285-597 27-338 (352)
265 TIGR01645 half-pint poly-U bin 99.3 8.7E-12 1.9E-16 132.5 9.6 79 57-144 105-183 (612)
266 KOG0113 U1 small nuclear ribon 99.3 8.3E-12 1.8E-16 115.3 8.1 74 60-141 102-175 (335)
267 KOG1240 Protein kinase contain 99.3 1.1E-09 2.5E-14 119.6 25.4 158 197-377 1034-1212(1431)
268 KOG2111 Uncharacterized conser 99.3 1.3E-09 2.9E-14 102.3 22.2 238 323-591 10-257 (346)
269 PF14259 RRM_6: RNA recognitio 99.3 2.3E-11 5E-16 93.3 8.3 68 62-138 1-68 (70)
270 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.3 1.4E-11 3E-16 128.4 9.5 77 59-144 3-79 (352)
271 KOG0107 Alternative splicing f 99.3 1.5E-11 3.3E-16 104.5 7.7 76 57-146 8-83 (195)
272 KOG2041 WD40 repeat protein [G 99.2 7.3E-10 1.6E-14 114.1 20.6 340 214-621 15-400 (1189)
273 TIGR01659 sex-lethal sex-letha 99.2 3.2E-11 6.9E-16 121.7 10.4 82 58-147 192-274 (346)
274 KOG1334 WD40 repeat protein [G 99.2 1.7E-10 3.7E-15 113.9 15.0 302 206-591 135-467 (559)
275 PF00930 DPPIV_N: Dipeptidyl p 99.2 1.9E-08 4.1E-13 104.3 31.2 314 222-575 1-347 (353)
276 KOG0148 Apoptosis-promoting RN 99.2 1.6E-11 3.4E-16 111.7 6.9 79 59-146 62-140 (321)
277 KOG0124 Polypyrimidine tract-b 99.2 6.4E-12 1.4E-16 118.6 4.3 84 58-150 112-195 (544)
278 PF04762 IKI3: IKI3 family; I 99.2 7.5E-08 1.6E-12 110.2 37.5 300 213-575 120-506 (928)
279 TIGR01645 half-pint poly-U bin 99.2 3.3E-11 7.1E-16 128.2 9.6 77 59-144 204-280 (612)
280 KOG0125 Ataxin 2-binding prote 99.2 2.2E-11 4.8E-16 113.9 6.8 78 58-146 95-172 (376)
281 PLN03120 nucleic acid binding 99.2 6.1E-11 1.3E-15 110.8 9.8 77 59-148 4-80 (260)
282 KOG0114 Predicted RNA-binding 99.2 8E-11 1.7E-15 90.5 8.4 86 53-150 12-97 (124)
283 PF04762 IKI3: IKI3 family; I 99.2 1.1E-07 2.3E-12 108.9 37.6 330 213-590 75-456 (928)
284 PLN03213 repressor of silencin 99.2 7.3E-11 1.6E-15 116.1 9.1 77 58-147 9-87 (759)
285 KOG0144 RNA-binding protein CU 99.2 7.3E-11 1.6E-15 114.5 8.9 108 33-149 9-117 (510)
286 KOG1354 Serine/threonine prote 99.2 6.7E-09 1.5E-13 98.4 21.2 324 214-587 26-431 (433)
287 smart00361 RRM_1 RNA recogniti 99.2 9.9E-11 2.1E-15 89.0 7.5 60 80-142 3-69 (70)
288 TIGR01648 hnRNP-R-Q heterogene 99.2 7.4E-11 1.6E-15 125.4 8.9 78 58-144 57-134 (578)
289 KOG0130 RNA-binding protein RB 99.1 1E-10 2.2E-15 94.5 6.7 77 58-143 71-147 (170)
290 PF00930 DPPIV_N: Dipeptidyl p 99.1 1.9E-07 4.1E-12 96.9 32.8 308 262-615 1-343 (353)
291 KOG1912 WD40 repeat protein [G 99.1 8E-09 1.7E-13 107.8 21.7 139 216-377 18-173 (1062)
292 KOG1354 Serine/threonine prote 99.1 1E-08 2.2E-13 97.3 20.3 277 255-590 27-359 (433)
293 KOG0649 WD40 repeat protein [G 99.1 5.6E-08 1.2E-12 87.9 24.0 285 210-587 7-313 (325)
294 PLN03121 nucleic acid binding 99.1 4.9E-10 1.1E-14 102.8 10.2 76 59-147 5-80 (243)
295 KOG4208 Nucleolar RNA-binding 99.1 3.4E-10 7.5E-15 99.5 8.1 82 58-148 48-130 (214)
296 KOG0145 RNA-binding protein EL 99.1 2.8E-10 6E-15 102.8 7.2 78 60-146 42-119 (360)
297 KOG0105 Alternative splicing f 99.1 3.1E-10 6.8E-15 97.1 6.8 79 56-146 3-81 (241)
298 KOG0148 Apoptosis-promoting RN 99.1 5.5E-10 1.2E-14 101.8 8.7 77 54-145 159-235 (321)
299 KOG0145 RNA-binding protein EL 99.1 7E-10 1.5E-14 100.2 9.1 79 58-145 277-355 (360)
300 KOG0108 mRNA cleavage and poly 99.0 4.2E-10 9.2E-15 114.7 8.3 81 58-147 17-97 (435)
301 smart00360 RRM RNA recognition 99.0 8.4E-10 1.8E-14 84.9 8.1 70 64-142 1-70 (71)
302 PF07433 DUF1513: Protein of u 99.0 3.1E-07 6.7E-12 88.9 26.9 237 217-531 8-275 (305)
303 smart00362 RRM_2 RNA recogniti 99.0 1.2E-09 2.5E-14 84.4 8.6 71 61-142 1-71 (72)
304 KOG2041 WD40 repeat protein [G 99.0 4.5E-08 9.8E-13 101.2 21.3 272 254-575 15-328 (1189)
305 KOG1310 WD40 repeat protein [G 99.0 6.1E-09 1.3E-13 104.5 14.5 115 252-394 48-177 (758)
306 TIGR01622 SF-CC1 splicing fact 99.0 1.4E-09 3.1E-14 117.5 11.1 80 59-147 186-265 (457)
307 KOG1240 Protein kinase contain 99.0 2.7E-08 5.8E-13 109.2 20.0 259 290-592 1034-1336(1431)
308 KOG0144 RNA-binding protein CU 99.0 3E-10 6.5E-15 110.3 4.6 83 59-150 124-207 (510)
309 TIGR01642 U2AF_lg U2 snRNP aux 99.0 1.4E-09 3E-14 119.4 10.0 78 59-145 295-372 (509)
310 TIGR01628 PABP-1234 polyadenyl 99.0 1.6E-09 3.4E-14 120.0 9.6 75 61-144 2-76 (562)
311 PF13893 RRM_5: RNA recognitio 99.0 3.1E-09 6.8E-14 76.9 7.9 55 82-144 1-55 (56)
312 COG0823 TolB Periplasmic compo 99.0 1.5E-07 3.4E-12 98.1 23.1 211 285-532 173-389 (425)
313 KOG3881 Uncharacterized conser 98.9 8.2E-08 1.8E-12 92.9 19.0 112 441-566 227-342 (412)
314 KOG0147 Transcriptional coacti 98.9 9.3E-10 2E-14 110.9 6.0 77 62-147 281-357 (549)
315 TIGR01628 PABP-1234 polyadenyl 98.9 2.9E-09 6.3E-14 117.9 10.0 81 57-147 283-363 (562)
316 TIGR01622 SF-CC1 splicing fact 98.9 2.5E-09 5.5E-14 115.6 9.3 79 56-144 86-164 (457)
317 KOG0127 Nucleolar protein fibr 98.9 5.6E-09 1.2E-13 104.7 10.3 85 54-147 287-377 (678)
318 KOG1912 WD40 repeat protein [G 98.9 2.2E-06 4.8E-11 90.1 29.4 376 196-615 39-580 (1062)
319 KOG1334 WD40 repeat protein [G 98.9 1.2E-08 2.7E-13 101.1 12.1 291 297-627 134-464 (559)
320 COG0823 TolB Periplasmic compo 98.9 1.8E-07 3.8E-12 97.7 21.0 225 362-609 194-423 (425)
321 cd00590 RRM RRM (RNA recogniti 98.9 1.1E-08 2.4E-13 79.3 9.2 72 61-142 1-72 (74)
322 KOG0117 Heterogeneous nuclear 98.9 6.4E-09 1.4E-13 101.8 8.4 73 61-150 261-333 (506)
323 KOG0974 WD-repeat protein WDR6 98.9 4.6E-07 1E-11 98.5 22.9 180 184-396 101-289 (967)
324 COG0724 RNA-binding proteins ( 98.9 7.8E-09 1.7E-13 105.1 9.3 79 59-146 115-193 (306)
325 KOG0974 WD-repeat protein WDR6 98.8 1.4E-07 3E-12 102.4 18.6 134 439-594 154-292 (967)
326 KOG0146 RNA-binding protein ET 98.8 2.8E-09 6E-14 96.8 4.9 80 56-144 282-361 (371)
327 PF15492 Nbas_N: Neuroblastoma 98.8 1.3E-06 2.9E-11 81.9 22.6 144 219-377 3-164 (282)
328 KOG4547 WD40 repeat-containing 98.8 1.2E-06 2.5E-11 89.8 23.9 197 262-497 2-221 (541)
329 PLN02919 haloacid dehalogenase 98.8 2E-06 4.2E-11 100.8 29.2 114 465-592 741-890 (1057)
330 PF07433 DUF1513: Protein of u 98.8 5.6E-06 1.2E-10 80.4 26.8 246 256-575 7-276 (305)
331 KOG0127 Nucleolar protein fibr 98.8 1.2E-08 2.6E-13 102.4 8.2 84 59-152 117-200 (678)
332 KOG4547 WD40 repeat-containing 98.8 7E-07 1.5E-11 91.4 19.4 189 179-398 2-223 (541)
333 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.7 4E-08 8.6E-13 105.8 10.0 76 57-145 273-348 (481)
334 KOG1409 Uncharacterized conser 98.7 1.7E-06 3.8E-11 82.5 18.4 332 205-590 16-394 (404)
335 PF14583 Pectate_lyase22: Olig 98.7 3.6E-05 7.9E-10 77.2 28.2 283 217-542 39-378 (386)
336 KOG1920 IkappaB kinase complex 98.7 2.2E-05 4.9E-10 87.2 28.8 273 214-523 69-345 (1265)
337 PF14583 Pectate_lyase22: Olig 98.7 7.7E-05 1.7E-09 74.9 30.3 311 240-589 16-380 (386)
338 COG5170 CDC55 Serine/threonine 98.7 1.6E-06 3.6E-11 81.4 16.9 275 255-588 28-365 (460)
339 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.6 8.3E-08 1.8E-12 103.4 9.6 73 59-146 2-76 (481)
340 TIGR01648 hnRNP-R-Q heterogene 98.6 8.3E-08 1.8E-12 102.5 9.3 71 59-146 233-305 (578)
341 PLN02919 haloacid dehalogenase 98.6 6.4E-05 1.4E-09 88.3 33.5 161 175-351 573-773 (1057)
342 KOG1064 RAVE (regulator of V-A 98.6 2.2E-07 4.9E-12 105.7 11.9 212 339-592 2189-2400(2439)
343 PF15492 Nbas_N: Neuroblastoma 98.6 5.3E-05 1.1E-09 71.4 25.4 72 258-351 2-76 (282)
344 PRK02888 nitrous-oxide reducta 98.6 2.2E-05 4.7E-10 83.5 25.6 246 326-599 200-483 (635)
345 PF08450 SGL: SMP-30/Gluconola 98.6 0.00018 3.9E-09 70.7 31.2 227 323-574 4-244 (246)
346 KOG0131 Splicing factor 3b, su 98.6 1.3E-07 2.8E-12 81.5 6.8 80 57-144 94-173 (203)
347 KOG1920 IkappaB kinase complex 98.6 2.5E-05 5.5E-10 86.8 25.8 250 255-548 70-325 (1265)
348 TIGR01642 U2AF_lg U2 snRNP aux 98.6 2.4E-07 5.2E-12 101.8 10.3 85 59-146 409-500 (509)
349 PF08450 SGL: SMP-30/Gluconola 98.6 0.00013 2.9E-09 71.6 28.7 228 257-531 3-244 (246)
350 KOG0109 RNA-binding protein LA 98.6 8.7E-08 1.9E-12 88.7 5.4 71 60-147 3-73 (346)
351 PF06433 Me-amine-dh_H: Methyl 98.5 7E-05 1.5E-09 73.7 25.2 287 235-554 18-329 (342)
352 TIGR03300 assembly_YfgL outer 98.5 6.5E-05 1.4E-09 79.2 26.8 287 225-587 65-376 (377)
353 KOG0123 Polyadenylate-binding 98.5 3E-07 6.5E-12 93.6 8.2 73 62-146 79-151 (369)
354 KOG1064 RAVE (regulator of V-A 98.5 1.2E-06 2.5E-11 100.2 13.0 211 238-552 2194-2405(2439)
355 KOG0415 Predicted peptidyl pro 98.5 1.9E-07 4.1E-12 88.7 5.6 84 58-150 238-321 (479)
356 KOG0309 Conserved WD40 repeat- 98.5 1.7E-06 3.6E-11 90.4 12.2 287 175-497 30-340 (1081)
357 KOG0110 RNA-binding protein (R 98.5 1.9E-07 4.1E-12 97.3 5.4 75 59-141 613-687 (725)
358 KOG0280 Uncharacterized conser 98.4 5.6E-05 1.2E-09 71.0 20.7 232 324-588 75-331 (339)
359 PF04059 RRM_2: RNA recognitio 98.4 1.3E-06 2.8E-11 69.4 8.3 77 60-143 2-79 (97)
360 PRK02888 nitrous-oxide reducta 98.4 0.00013 2.8E-09 77.8 25.4 95 489-591 297-405 (635)
361 KOG4532 WD40-like repeat conta 98.4 0.0001 2.2E-09 68.3 21.2 221 330-575 83-322 (344)
362 PF02897 Peptidase_S9_N: Proly 98.4 0.00026 5.7E-09 75.6 27.6 258 256-550 126-409 (414)
363 KOG0110 RNA-binding protein (R 98.4 1.4E-06 3.1E-11 91.0 9.3 78 60-146 516-596 (725)
364 KOG0146 RNA-binding protein ET 98.4 6.3E-07 1.4E-11 81.8 5.7 83 58-149 18-101 (371)
365 COG5170 CDC55 Serine/threonine 98.4 1.5E-05 3.2E-10 75.1 14.8 257 323-618 31-356 (460)
366 KOG0309 Conserved WD40 repeat- 98.3 4.5E-06 9.7E-11 87.3 12.3 299 244-595 14-344 (1081)
367 KOG3914 WD repeat protein WDR4 98.3 1.2E-05 2.7E-10 78.6 14.1 157 416-597 69-231 (390)
368 KOG0280 Uncharacterized conser 98.3 6.3E-05 1.4E-09 70.6 18.1 132 466-612 124-266 (339)
369 KOG4206 Spliceosomal protein s 98.3 2.5E-06 5.5E-11 77.0 8.6 70 61-137 11-80 (221)
370 KOG0533 RRM motif-containing p 98.3 2.4E-06 5.2E-11 80.1 8.6 84 58-151 82-165 (243)
371 KOG0124 Polypyrimidine tract-b 98.3 1.1E-06 2.5E-11 83.7 6.5 76 60-144 211-286 (544)
372 KOG4212 RNA-binding protein hn 98.3 2.1E-06 4.5E-11 84.1 8.1 78 60-147 45-123 (608)
373 KOG4661 Hsp27-ERE-TATA-binding 98.3 1.8E-06 4E-11 87.1 7.5 83 56-147 402-484 (940)
374 KOG4532 WD40-like repeat conta 98.3 0.00024 5.3E-09 65.9 20.3 192 265-499 84-285 (344)
375 PF06433 Me-amine-dh_H: Methyl 98.3 0.002 4.3E-08 63.7 27.9 268 285-597 17-328 (342)
376 KOG0226 RNA-binding proteins [ 98.3 2E-06 4.3E-11 78.4 6.7 77 58-143 189-265 (290)
377 KOG3617 WD40 and TPR repeat-co 98.2 3.1E-05 6.8E-10 82.4 16.0 112 257-395 19-131 (1416)
378 PF02897 Peptidase_S9_N: Proly 98.2 0.0028 6E-08 67.8 31.6 257 323-592 128-406 (414)
379 KOG3617 WD40 and TPR repeat-co 98.2 5.8E-05 1.3E-09 80.4 17.6 110 213-348 15-131 (1416)
380 KOG4212 RNA-binding protein hn 98.2 2.5E-06 5.4E-11 83.5 7.0 74 56-143 533-606 (608)
381 KOG1832 HIV-1 Vpr-binding prot 98.2 1.7E-06 3.7E-11 92.1 6.2 148 202-376 1090-1246(1516)
382 PF11768 DUF3312: Protein of u 98.2 0.0049 1.1E-07 64.4 29.5 138 441-590 185-329 (545)
383 KOG4205 RNA-binding protein mu 98.1 1.8E-06 4E-11 84.5 4.1 62 58-127 5-66 (311)
384 TIGR03300 assembly_YfgL outer 98.1 0.0025 5.5E-08 67.1 28.1 256 224-542 104-376 (377)
385 PF11768 DUF3312: Protein of u 98.1 0.00029 6.3E-09 73.3 19.8 92 442-545 238-329 (545)
386 KOG0123 Polyadenylate-binding 98.0 1.2E-05 2.5E-10 82.2 8.0 63 61-137 3-65 (369)
387 KOG1645 RING-finger-containing 98.0 0.00095 2.1E-08 65.7 20.4 88 236-349 175-267 (463)
388 KOG3914 WD repeat protein WDR4 98.0 4E-05 8.7E-10 75.1 11.2 94 236-355 134-230 (390)
389 PF00400 WD40: WD domain, G-be 98.0 5.4E-06 1.2E-10 54.7 3.0 36 205-240 3-39 (39)
390 KOG1409 Uncharacterized conser 98.0 0.00047 1E-08 66.4 16.3 226 330-592 35-272 (404)
391 KOG2695 WD40 repeat protein [G 98.0 4.6E-05 9.9E-10 73.1 9.4 160 174-360 218-388 (425)
392 PF11608 Limkain-b1: Limkain b 97.9 5.3E-05 1.2E-09 56.8 7.6 70 60-145 3-74 (90)
393 KOG0882 Cyclophilin-related pe 97.9 0.00019 4.1E-09 71.4 12.5 206 251-499 6-234 (558)
394 KOG1832 HIV-1 Vpr-binding prot 97.9 8.4E-06 1.8E-10 87.0 3.4 213 321-573 1104-1319(1516)
395 KOG4714 Nucleoporin [Nuclear s 97.9 0.00045 9.8E-09 63.9 13.9 175 196-396 72-253 (319)
396 PF04053 Coatomer_WDAD: Coatom 97.9 0.00097 2.1E-08 70.2 18.6 201 363-617 35-250 (443)
397 PF13360 PQQ_2: PQQ-like domai 97.9 0.0032 7E-08 61.4 21.4 70 261-355 32-101 (238)
398 KOG4205 RNA-binding protein mu 97.8 2.4E-05 5.2E-10 76.8 5.8 78 58-145 96-173 (311)
399 KOG4190 Uncharacterized conser 97.8 7.7E-05 1.7E-09 75.6 9.3 170 205-404 727-913 (1034)
400 KOG2114 Vacuolar assembly/sort 97.8 0.0024 5.2E-08 69.1 20.7 192 259-497 29-244 (933)
401 KOG2066 Vacuolar assembly/sort 97.8 0.00086 1.9E-08 71.8 17.2 167 214-425 40-221 (846)
402 KOG0132 RNA polymerase II C-te 97.8 4.9E-05 1.1E-09 80.4 7.6 72 58-144 420-491 (894)
403 KOG0109 RNA-binding protein LA 97.8 1.9E-05 4.2E-10 73.5 4.1 71 58-145 77-147 (346)
404 PF13360 PQQ_2: PQQ-like domai 97.8 0.013 2.8E-07 57.1 24.4 99 474-591 121-231 (238)
405 KOG3621 WD40 repeat-containing 97.8 0.0048 1.1E-07 65.4 21.5 114 212-349 32-155 (726)
406 PF06977 SdiA-regulated: SdiA- 97.8 0.0065 1.4E-07 58.5 20.9 190 255-483 23-240 (248)
407 PF00400 WD40: WD domain, G-be 97.8 0.00011 2.3E-09 48.3 6.3 35 457-494 5-39 (39)
408 COG3490 Uncharacterized protei 97.8 0.0086 1.9E-07 56.7 20.5 141 217-377 71-242 (366)
409 PF04053 Coatomer_WDAD: Coatom 97.8 0.013 2.8E-07 61.9 24.7 142 215-397 34-175 (443)
410 PRK11138 outer membrane biogen 97.7 0.045 9.7E-07 57.9 28.8 97 474-588 293-392 (394)
411 KOG2066 Vacuolar assembly/sort 97.7 0.0017 3.6E-08 69.7 16.7 129 222-377 80-222 (846)
412 KOG4209 Splicing factor RNPS1, 97.7 6.7E-05 1.5E-09 70.9 5.7 76 58-144 100-176 (231)
413 KOG4454 RNA binding protein (R 97.6 3.1E-05 6.7E-10 69.1 2.4 69 59-137 9-77 (267)
414 PRK13616 lipoprotein LpqB; Pro 97.6 0.013 2.8E-07 64.4 22.9 214 339-565 328-550 (591)
415 KOG4714 Nucleoporin [Nuclear s 97.6 0.0019 4.2E-08 59.9 13.3 71 465-546 181-255 (319)
416 PF04841 Vps16_N: Vps16, N-ter 97.5 0.082 1.8E-06 55.8 27.4 58 513-573 217-277 (410)
417 KOG0120 Splicing factor U2AF, 97.5 5.4E-05 1.2E-09 78.3 3.4 77 59-144 289-365 (500)
418 KOG1275 PAB-dependent poly(A) 97.5 0.0012 2.6E-08 71.6 13.5 117 225-371 147-276 (1118)
419 COG3204 Uncharacterized protei 97.5 0.032 7E-07 53.5 21.2 167 253-459 85-272 (316)
420 KOG3621 WD40 repeat-containing 97.5 0.013 2.9E-07 62.3 20.5 114 253-398 33-155 (726)
421 PRK10115 protease 2; Provision 97.5 0.076 1.6E-06 60.1 28.1 249 256-548 129-397 (686)
422 KOG1548 Transcription elongati 97.5 0.0007 1.5E-08 65.2 10.0 83 56-146 131-219 (382)
423 COG3490 Uncharacterized protei 97.5 0.081 1.7E-06 50.4 23.1 101 256-377 70-178 (366)
424 KOG0153 Predicted RNA-binding 97.5 0.00027 5.7E-09 68.0 7.0 70 59-143 228-298 (377)
425 KOG4190 Uncharacterized conser 97.5 0.00063 1.4E-08 69.2 10.0 259 330-623 746-1030(1034)
426 COG5175 MOT2 Transcriptional r 97.5 0.00026 5.7E-09 67.3 6.9 76 59-142 114-197 (480)
427 PRK13616 lipoprotein LpqB; Pro 97.5 0.0067 1.5E-07 66.6 18.8 147 211-376 347-512 (591)
428 KOG1897 Damage-specific DNA bi 97.5 0.25 5.3E-06 55.2 29.6 321 217-592 491-858 (1096)
429 KOG1645 RING-finger-containing 97.5 0.014 3E-07 57.8 18.3 240 323-590 198-461 (463)
430 KOG2114 Vacuolar assembly/sort 97.5 0.027 5.9E-07 61.3 22.0 224 324-574 29-272 (933)
431 KOG4660 Protein Mei2, essentia 97.4 0.00011 2.3E-09 75.4 4.0 66 59-137 75-140 (549)
432 PF06977 SdiA-regulated: SdiA- 97.4 0.022 4.8E-07 54.9 19.2 183 413-617 25-239 (248)
433 KOG0882 Cyclophilin-related pe 97.4 0.0099 2.1E-07 59.6 16.3 243 212-499 8-308 (558)
434 PF04841 Vps16_N: Vps16, N-ter 97.4 0.19 4.1E-06 53.1 27.2 48 286-348 62-109 (410)
435 PRK10115 protease 2; Provision 97.3 0.16 3.4E-06 57.6 28.0 117 213-348 126-255 (686)
436 KOG0116 RasGAP SH3 binding pro 97.3 0.0003 6.6E-09 72.0 5.8 75 60-144 289-363 (419)
437 KOG2695 WD40 repeat protein [G 97.3 0.00067 1.4E-08 65.4 7.5 125 463-598 252-385 (425)
438 KOG1457 RNA binding protein (c 97.3 0.002 4.4E-08 57.9 9.9 77 60-144 35-114 (284)
439 KOG1897 Damage-specific DNA bi 97.3 0.45 9.7E-06 53.2 36.2 360 183-590 500-898 (1096)
440 COG3391 Uncharacterized conser 97.3 0.11 2.3E-06 54.6 24.5 189 215-430 75-273 (381)
441 KOG0106 Alternative splicing f 97.2 0.00024 5.1E-09 65.3 3.4 63 60-138 2-64 (216)
442 KOG1275 PAB-dependent poly(A) 97.2 0.0043 9.4E-08 67.5 12.9 192 331-544 147-341 (1118)
443 COG3386 Gluconolactonase [Carb 97.2 0.18 4E-06 50.5 23.4 151 218-397 29-193 (307)
444 KOG4649 PQQ (pyrrolo-quinoline 97.1 0.23 5E-06 46.7 25.5 68 264-355 62-130 (354)
445 PF03178 CPSF_A: CPSF A subuni 97.1 0.29 6.2E-06 50.2 25.1 222 285-542 2-262 (321)
446 PRK11138 outer membrane biogen 97.1 0.53 1.1E-05 49.8 28.3 109 225-356 120-231 (394)
447 COG3391 Uncharacterized conser 97.0 0.55 1.2E-05 49.3 30.9 240 323-594 35-287 (381)
448 PF00780 CNH: CNH domain; Int 97.0 0.41 8.8E-06 47.8 25.6 139 223-377 5-153 (275)
449 PF14605 Nup35_RRM_2: Nup53/35 96.9 0.0028 6.1E-08 44.5 5.7 52 60-126 2-53 (53)
450 PF05096 Glu_cyclase_2: Glutam 96.9 0.065 1.4E-06 51.4 16.5 128 245-403 33-163 (264)
451 KOG3152 TBP-binding protein, a 96.9 0.0012 2.6E-08 60.9 4.1 70 59-137 74-156 (278)
452 KOG0106 Alternative splicing f 96.8 0.0009 2E-08 61.6 3.1 68 58-142 98-165 (216)
453 KOG1548 Transcription elongati 96.8 0.0081 1.8E-07 58.1 9.4 87 57-152 263-356 (382)
454 KOG1008 Uncharacterized conser 96.8 0.00082 1.8E-08 70.1 3.0 182 184-396 72-274 (783)
455 KOG2079 Vacuolar assembly/sort 96.8 0.016 3.4E-07 64.7 12.7 102 224-348 98-203 (1206)
456 KOG1995 Conserved Zn-finger pr 96.8 0.0016 3.6E-08 63.4 4.6 87 56-149 63-155 (351)
457 COG3386 Gluconolactonase [Carb 96.7 0.44 9.5E-06 47.8 21.8 228 324-575 30-275 (307)
458 KOG4640 Anaphase-promoting com 96.7 0.0064 1.4E-07 63.7 8.8 75 215-301 22-100 (665)
459 PF00780 CNH: CNH domain; Int 96.6 0.86 1.9E-05 45.4 25.4 234 263-559 5-269 (275)
460 PF10647 Gmad1: Lipoprotein Lp 96.6 0.78 1.7E-05 44.9 24.0 155 362-532 25-185 (253)
461 KOG1008 Uncharacterized conser 96.6 0.00059 1.3E-08 71.1 0.4 148 459-615 98-259 (783)
462 PF08777 RRM_3: RNA binding mo 96.5 0.0068 1.5E-07 49.7 5.8 58 59-130 1-58 (105)
463 PF05096 Glu_cyclase_2: Glutam 96.4 0.83 1.8E-05 44.0 20.0 179 217-432 48-253 (264)
464 KOG4640 Anaphase-promoting com 96.3 0.015 3.2E-07 61.1 8.6 90 463-565 20-115 (665)
465 PF15390 DUF4613: Domain of un 96.3 0.19 4.1E-06 53.0 16.4 145 324-496 25-186 (671)
466 KOG0151 Predicted splicing reg 96.3 0.0083 1.8E-07 63.5 6.6 72 58-137 173-247 (877)
467 PF10647 Gmad1: Lipoprotein Lp 96.3 0.32 6.9E-06 47.7 17.3 139 215-377 25-182 (253)
468 KOG1855 Predicted RNA-binding 96.3 0.0074 1.6E-07 60.0 5.6 75 50-132 220-309 (484)
469 PF03178 CPSF_A: CPSF A subuni 96.2 1.8 3.8E-05 44.3 27.2 183 340-545 2-202 (321)
470 COG3204 Uncharacterized protei 96.2 0.31 6.7E-06 47.0 15.6 153 210-377 82-249 (316)
471 PF08553 VID27: VID27 cytoplas 96.1 0.32 7E-06 54.7 17.9 135 386-544 501-646 (794)
472 smart00320 WD40 WD40 repeats. 96.0 0.0073 1.6E-07 38.5 3.3 35 206-240 5-40 (40)
473 KOG2377 Uncharacterized conser 96.0 0.99 2.2E-05 46.1 18.9 135 174-335 27-169 (657)
474 PF07995 GSDH: Glucose / Sorbo 95.9 2.4 5.2E-05 43.5 26.3 247 323-584 6-329 (331)
475 KOG4211 Splicing factor hnRNP- 95.9 0.02 4.4E-07 58.2 6.8 69 58-135 102-170 (510)
476 KOG0120 Splicing factor U2AF, 95.9 0.022 4.7E-07 59.5 7.2 68 80-151 424-494 (500)
477 KOG2280 Vacuolar assembly/sort 95.8 3.8 8.1E-05 45.0 23.8 100 513-623 217-319 (829)
478 KOG4211 Splicing factor hnRNP- 95.8 0.026 5.6E-07 57.5 7.3 66 59-136 10-75 (510)
479 PF05694 SBP56: 56kDa selenium 95.8 2.3 5.1E-05 43.9 20.8 238 330-575 86-393 (461)
480 KOG0147 Transcriptional coacti 95.8 0.026 5.7E-07 58.3 7.2 71 78-156 466-536 (549)
481 COG5290 IkappaB kinase complex 95.7 0.11 2.4E-06 56.2 11.5 102 256-374 249-350 (1243)
482 PF05694 SBP56: 56kDa selenium 95.5 3.8 8.2E-05 42.4 24.7 236 264-532 86-393 (461)
483 PF14783 BBS2_Mid: Ciliary BBS 95.4 1.2 2.6E-05 36.6 14.0 94 466-575 2-104 (111)
484 KOG4206 Spliceosomal protein s 95.4 0.074 1.6E-06 48.8 7.9 76 56-144 143-218 (221)
485 PF14783 BBS2_Mid: Ciliary BBS 95.3 0.51 1.1E-05 38.7 11.7 65 256-348 2-71 (111)
486 cd00216 PQQ_DH Dehydrogenases 95.2 6 0.00013 43.1 26.8 77 265-358 61-138 (488)
487 KOG4210 Nuclear localization s 95.1 0.013 2.8E-07 57.8 2.5 70 58-136 183-253 (285)
488 PF12894 Apc4_WD40: Anaphase-p 95.0 0.063 1.4E-06 36.5 4.8 34 556-594 12-45 (47)
489 COG1770 PtrB Protease II [Amin 94.9 7 0.00015 42.6 27.1 212 256-499 131-351 (682)
490 smart00320 WD40 WD40 repeats. 94.9 0.072 1.6E-06 33.5 5.0 33 459-494 8-40 (40)
491 KOG1190 Polypyrimidine tract-b 94.9 0.13 2.8E-06 51.2 8.3 75 59-146 297-371 (492)
492 PF05172 Nup35_RRM: Nup53/35/4 94.8 0.13 2.9E-06 41.4 7.1 76 59-144 6-88 (100)
493 PF08553 VID27: VID27 cytoplas 94.8 8.8 0.00019 43.6 23.4 121 235-377 505-635 (794)
494 PF12894 Apc4_WD40: Anaphase-p 94.7 0.12 2.5E-06 35.2 5.6 32 255-297 13-44 (47)
495 PF14870 PSII_BNR: Photosynthe 94.6 2.6 5.6E-05 42.2 16.9 147 210-377 141-292 (302)
496 KOG0129 Predicted RNA-binding 94.5 0.12 2.6E-06 53.2 7.6 64 57-128 368-432 (520)
497 KOG2079 Vacuolar assembly/sort 94.4 0.12 2.6E-06 58.0 7.8 89 185-274 102-196 (1206)
498 KOG1996 mRNA splicing factor [ 94.3 0.13 2.7E-06 48.8 6.6 72 77-152 298-370 (378)
499 KOG0129 Predicted RNA-binding 94.1 0.094 2E-06 54.0 5.9 64 56-128 256-325 (520)
500 TIGR02604 Piru_Ver_Nterm putat 94.1 2.5 5.4E-05 44.1 16.8 157 412-574 16-202 (367)
No 1
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-103 Score=768.25 Aligned_cols=665 Identities=46% Similarity=0.846 Sum_probs=601.7
Q ss_pred CcccccCCCCCCCCCCCCCccccc---ccCcccccCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEec
Q 005140 25 DLDSIQLPPGEDLGIISDDEDVYE---DDDQEVESGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPV 101 (712)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 101 (712)
++++..+....++.+..+++++.. +..|..+.|++++|||+|+|+|+++|.++|+.+|.++|+++|+|+. +++|.
T Consensus 21 ~~~e~~f~Dp~~fvd~v~de~l~~Dll~k~p~~~eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn--~~~P~ 98 (698)
T KOG2314|consen 21 QMTEETFEDPKGFVDDVDDEDLVGDLLEKRPVTAEGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVN--MYYPI 98 (698)
T ss_pred hcccccccCCcccccccchhhhhhHHHhhCcCccCCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccc--eeecc
Confidence 333333323334444444444432 6677777799999999999999999999999999999999999999 99999
Q ss_pred cCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEEEEEeecccccccCCCCCCCCCCCCCCCCCccchhhccCCCC
Q 005140 102 DPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFDDFDKFMKVPDEWAPPEHKPYTPGENLQKWLTDEKA 181 (712)
Q Consensus 102 d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~ 181 (712)
|+++| ++||.|++|++..+|+.|++.+||+.|+++|+|.|+.++++++|.+++++|.+|..++|++.++|++||+|+++
T Consensus 99 ~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~~f~d~eky~s~~dew~~pe~q~fk~~~~L~~WL~d~~~ 177 (698)
T KOG2314|consen 99 DEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVRLFKDFEKYESISDEWREPEKQTFKDSSDLRSWLMDDKC 177 (698)
T ss_pred CccCC-eeeEEEEEecChhhHHHHHHhcccceecccceEEeehhhhHHHhcCCccccCCcccccccchHHHHHHHhCccc
Confidence 99555 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEECCee--EEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCceEEeecccCcceeeeecCCCeeEE
Q 005140 182 RDQFVIRSGTDT--EVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQVKLI 259 (712)
Q Consensus 182 ~~~~~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~~v~~i 259 (712)
||||++..+..+ .++||. ....+...-.+..|+.+.+.|||-|+||+|.+..||.+|++. ++.++.+|.|++|..+
T Consensus 178 RDQf~v~~d~~~~~svfwN~-~~n~p~~ie~RenWTetyv~wSP~GTYL~t~Hk~GI~lWGG~-~f~r~~RF~Hp~Vq~i 255 (698)
T KOG2314|consen 178 RDQFVVQDDVKTTVSVFWNS-KFNEPSLIEERENWTETYVRWSPKGTYLVTFHKQGIALWGGE-SFDRIQRFYHPGVQFI 255 (698)
T ss_pred cceEEEEecCcceeEEEccc-cCCchhhhhhhhcceeeeEEecCCceEEEEEeccceeeecCc-cHHHHHhccCCCceee
Confidence 999999998777 789998 444666677889999999999999999999999999999999 9999999999999999
Q ss_pred EecCCCCEEEEEcCCCCCCC-cCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec
Q 005140 260 DFSPGEKYLVTYSSHEPSNP-RDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG 338 (712)
Q Consensus 260 ~~Spdg~~l~t~s~d~~~~~-~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~ 338 (712)
.|||+.+||+|.+..+...+ .+.....++|||+.+|...+.|....... ..||.++||. |++|+|...
T Consensus 256 dfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~----------~~WP~frWS~-DdKy~Arm~ 324 (698)
T KOG2314|consen 256 DFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPY----------LKWPIFRWSH-DDKYFARMT 324 (698)
T ss_pred ecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCc----------cccceEEecc-CCceeEEec
Confidence 99999999999998755433 23333689999999999999998754332 3499999999 999999999
Q ss_pred CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEEC
Q 005140 339 KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQ 418 (712)
Q Consensus 339 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s 418 (712)
.++|.||+.+++.++..+.++.++|..++|||.++.||+|+|+. .+.++++.++++|+++.++..+++++.+|+++|.
T Consensus 325 ~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~--~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQ 402 (698)
T KOG2314|consen 325 GNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPET--NNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQ 402 (698)
T ss_pred cceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccc--cCCcceEEEEecCccceeeeccceeeeccEEEec
Confidence 99999999999999999999999999999999999999999998 9999999999999999999999999999999999
Q ss_pred cCCCEEEEEEccccccc-ccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeec
Q 005140 419 SSGDYLAVKVDRYTKTK-KSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRT 497 (712)
Q Consensus 419 ~~g~~l~~~~~~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~ 497 (712)
.+|.+||+.+++.++++ +..++++.||+++++.+|+..+.+ ...|..++|.|.|+.|++.++...+.++++|.+++
T Consensus 403 k~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel---ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~ 479 (698)
T KOG2314|consen 403 KSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL---KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET 479 (698)
T ss_pred cCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec---chheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence 99999999999999886 889999999999999999999999 89999999999999999999987777999999975
Q ss_pred ccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECC--cceeeeeccccceeeEEECCCCCEEEEEEc
Q 005140 498 AQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD--ELETMATAEHFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 498 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~--~~~~~~~~~~~~v~~~~~spdg~~l~t~s~ 575 (712)
.. .+..++..+....++.+.|||.|+++++++..+..|.+.++|.+ ..+.+....|...+.+.|+|.|+|++++++
T Consensus 480 ~~--~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 480 NI--KKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred CC--CchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeee
Confidence 22 34567778877789999999999999999887678999999998 566777788899999999999999999998
Q ss_pred c-ceeccccEEEEEecCceeeeecccceeeeEEecCCCCCCChhhHHHHHHHHHHhhhhhhhhhHHHHhhhhHHHHHHHH
Q 005140 576 S-VHEMENGFNIWSFNGKLLYRTLKDHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSMQLSEQEREKRR 654 (712)
Q Consensus 576 ~-~~~~d~~v~iw~~~g~~~~~~~~~~i~~~~w~p~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (712)
. +|..|++++||++.|+++.....+++.++.|+|+++.++|....++||++||+|+++|+++|+.++..++++..++|+
T Consensus 558 ~wrhk~d~GYri~tfqGrll~~~~i~~f~qF~WRPRPps~LS~e~~KkIkKnLKky~a~FeeqD~~e~~~AsrElvekrR 637 (698)
T KOG2314|consen 558 SWRHKVDNGYRIFTFQGRLLKEDIIDRFKQFLWRPRPPSLLSEEKQKKIKKNLKKYSAQFEEQDRLEQSRASRELVEKRR 637 (698)
T ss_pred hhhhccccceEEEEeecHHHHHHHHHHHHhhccCCCCCcccCHHHHHHHHHHHHHHHHHHhhhhhHhhhhhHHHHHHHHH
Confidence 8 888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc-eEEEeEEEEeEEeeEEEeeC
Q 005140 655 SLKNEWEKKISEWKRLHEEEKMERQMLRDGEASDEEEE-YEAKEVEVEEVLDVTEEVEE 712 (712)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ee~~~~~~e~~~ 712 (712)
+||++|.+||.+..+++.+++.++..++++.+.|+.++ .+..+|+++|.++++||+.+
T Consensus 638 qlm~~f~~yR~~~~~~~~eek~~r~~lr~~vdtd~~~~~~e~veEei~e~le~tee~~~ 696 (698)
T KOG2314|consen 638 QLMEQFTEYREKIIEEMAEEKSERIKLRGGVDTDALDDEFETVEEEIEEFLEVTEEKVP 696 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcceeeecCCCCchhhhcchhhHHHHHHHHhhccccccc
Confidence 99999999999999999999999999999999877666 56677777777877777653
No 2
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=100.00 E-value=1.9e-47 Score=371.97 Aligned_cols=501 Identities=30% Similarity=0.553 Sum_probs=406.9
Q ss_pred ceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCceEEeecccCcceeeeecCCCeeEEEec
Q 005140 183 DQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQVKLIDFS 262 (712)
Q Consensus 183 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~~v~~i~~S 262 (712)
+||++.++..+.++|+. ........+....|++.+++|||.|+||++.+..+|.+|+.. .+..+.++.|+.|..+.||
T Consensus 3 sQF~~~~s~~i~~f~~~-~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~-~~~~l~~~~~~~V~~~~fS 80 (561)
T COG5354 3 SQFPLDYSAVISVFWNS-QSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAGVECWGGP-SKAKLVRFRHPDVKYLDFS 80 (561)
T ss_pred ceeeeeccceEEEeecC-ccccccccccccCcchhheeecCcchheehhhccceEEcccc-chhheeeeecCCceecccC
Confidence 79999999999999998 445555566778899999999999999999999999999999 7779999999999999999
Q ss_pred CCCCEEEEEcCCCCCCCc-----CCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEe
Q 005140 263 PGEKYLVTYSSHEPSNPR-----DANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKL 337 (712)
Q Consensus 263 pdg~~l~t~s~d~~~~~~-----~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~ 337 (712)
|.|+||++.+..+...|. ......+.+||+.+|..+..|.+..... +-||.++||. +++|+|..
T Consensus 81 P~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~----------~~Wp~~k~s~-~D~y~ARv 149 (561)
T COG5354 81 PNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPY----------LGWPVLKFSI-DDKYVARV 149 (561)
T ss_pred cccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcc----------cccceeeeee-cchhhhhh
Confidence 999999999987653321 1122369999999999999998876653 2399999999 99999999
Q ss_pred cCCeEEEEEc-CCceecccccccccCeeeEEECCC--CCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeeccee
Q 005140 338 GKNMISVYET-ESFTLIDKKSLKVENVMDFSWSPT--DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCK 414 (712)
Q Consensus 338 ~d~~i~iwd~-~~~~~~~~~~~~~~~v~~~~~sp~--~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 414 (712)
....+.|+++ .+........+...++..++|||. +..||+|+|+. .+.++.+.++.++....+.+++++.++.|+
T Consensus 150 v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk--~~kpa~~~i~sIp~~s~l~tk~lfk~~~~q 227 (561)
T COG5354 150 VGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEK--LNKPAMVRILSIPKNSVLVTKNLFKVSGVQ 227 (561)
T ss_pred ccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEcccc--CCCCcEEEEEEccCCCeeeeeeeEeecccE
Confidence 9999999995 333444445566778999999997 44589999999 899999999999999999999999999999
Q ss_pred EEECcCCCEEEEEEccccccccccc--ccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEE
Q 005140 415 MYWQSSGDYLAVKVDRYTKTKKSTY--TGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISF 492 (712)
Q Consensus 415 ~~~s~~g~~l~~~~~~~~~~~~~~~--~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i 492 (712)
+.|++.|++|++......++++++| +++.|+++.+..+++.. .+ .++|++++|+|.++.|+++++-.+. .+.+
T Consensus 228 LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~---~~pVhdf~W~p~S~~F~vi~g~~pa-~~s~ 302 (561)
T COG5354 228 LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DL---KDPVHDFTWEPLSSRFAVISGYMPA-SVSV 302 (561)
T ss_pred EEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cc---cccceeeeecccCCceeEEeccccc-ceee
Confidence 9999999999999999999999999 67888888877777643 44 8999999999999999999975443 7889
Q ss_pred EEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeee-eccccceeeEEECCCCCEEE
Q 005140 493 YSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA-TAEHFMATDVEWDPTGRYVA 571 (712)
Q Consensus 493 ~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~-~~~~~~v~~~~~spdg~~l~ 571 (712)
++++.. ....++...-+.+.|||.++++++++.++..|.+.+||..+.-.+. .......+.+.|||||+|+.
T Consensus 303 ~~lr~N-------l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~ 375 (561)
T COG5354 303 FDLRGN-------LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYD 375 (561)
T ss_pred cccccc-------eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEE
Confidence 998542 5666777778999999999999999998889999999998665555 56667778889999999999
Q ss_pred EEEcc-ceeccccEEEEEecCceeeee----------------------------------------cccceeeeEEecC
Q 005140 572 TAVTS-VHEMENGFNIWSFNGKLLYRT----------------------------------------LKDHFFQFLWRPR 610 (712)
Q Consensus 572 t~s~~-~~~~d~~v~iw~~~g~~~~~~----------------------------------------~~~~i~~~~w~p~ 610 (712)
+...+ +.+.|+.+.||++.|..+... ..+....++|+|.
T Consensus 376 ~~~ts~k~~~Dn~i~l~~v~g~~~fel~~~~W~p~~~~~ttsSs~~~h~~~~~~~~~k~~Ga~~~e~~rg~~k~Fa~r~~ 455 (561)
T COG5354 376 TDTTSEKLRVDNSIKLWDVYGAKVFELTNITWDPSGQYVTTSSSCPKHKVEHGYKIFKIAGALYPEEARGGFKNFAWRPE 455 (561)
T ss_pred ecCCCcccccCcceEEEEecCchhhhhhhccccCCcccceeeccCCCCccccccccccccccccChhhhcccceeEEecC
Confidence 99887 678899999999988644300 0134556899999
Q ss_pred CCCCCChhhHHHHHHHHHHhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 005140 611 PPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSMQLSEQEREKRRSLKNEWEKKISEWKRLHEEEKMERQMLRDGEASDEE 690 (712)
Q Consensus 611 ~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (712)
...+++....+++++.++.+...+++.+.+......+...-+++++.++|.+++.+. +.+...+..|.-....+.....
T Consensus 456 ~p~~lt~~~~~K~~~~~~~~~~~~~k~~~~~~dsa~r~s~p~~ke~~~q~~e~s~e~-ki~sl~~~lRaIe~lker~~~~ 534 (561)
T COG5354 456 PPSKLTIESAKKYVKPSRHRFVPFEKAVIMEADSANRSSAPRKKELVEQWPEYSDED-KIRSLLKKLRAIEALKERMRSG 534 (561)
T ss_pred CCccCChhhhhhcccchhhhccccccccccccccccccccchhhcccccccccCHHH-HHHHHHHHhhhhhcchhhcccc
Confidence 999999999999999999999999999988888888888889999999999888776 3333333333322222222233
Q ss_pred cceEEEe----EEEEeEEeeEEEee
Q 005140 691 EEYEAKE----VEVEEVLDVTEEVE 711 (712)
Q Consensus 691 ~~~~~~~----~~~ee~~~~~~e~~ 711 (712)
++.+..+ +.+||+++|.+|+.
T Consensus 535 eele~~qv~kietee~VlsElk~lv 559 (561)
T COG5354 535 EELEVIQVNKIETEEEVLSELKELV 559 (561)
T ss_pred cchhhhhhhhhhhHHHHHHHhhhcc
Confidence 3334444 55666666655543
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.9e-42 Score=320.66 Aligned_cols=330 Identities=18% Similarity=0.298 Sum_probs=263.6
Q ss_pred CCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee-cCCC-eeEEEecCCCCEEEEEcCCCCCCC
Q 005140 203 LKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-AHPQ-VKLIDFSPGEKYLVTYSSHEPSNP 279 (712)
Q Consensus 203 ~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~~~-v~~i~~Spdg~~l~t~s~d~~~~~ 279 (712)
..+...+.+|..+|.|++|||+|++||+|+.|. +++||.. +..+..+. .|.. |.|++|||||+.||+|+.+
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~-TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~d----- 178 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLD-TETPLFTCKGHKNWVLCVAWSPDGKKIASGSKD----- 178 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccC-CCCcceeecCCccEEEEEEECCCcchhhccccC-----
Confidence 344556789999999999999999999999999 8899999 77777666 3555 9999999999999999999
Q ss_pred cCCCccEEEEEEccCCce-eeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccccc
Q 005140 280 RDANRVVINIFDVRTGKV-MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKS 357 (712)
Q Consensus 280 ~~~~~~~I~iwd~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~ 357 (712)
|+|++||..+|+. .+.+.+|...++ ++.|.-+-..| ...+||+++ ||.++|||+..+..+....
T Consensus 179 -----g~I~lwdpktg~~~g~~l~gH~K~It--------~Lawep~hl~p-~~r~las~skDg~vrIWd~~~~~~~~~ls 244 (480)
T KOG0271|consen 179 -----GSIRLWDPKTGQQIGRALRGHKKWIT--------ALAWEPLHLVP-PCRRLASSSKDGSVRIWDTKLGTCVRTLS 244 (480)
T ss_pred -----CeEEEecCCCCCcccccccCccccee--------EEeecccccCC-CccceecccCCCCEEEEEccCceEEEEec
Confidence 9999999998875 578889987763 33333233345 678999999 9999999999988888888
Q ss_pred ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeee--cceeE---------EECcCCC----
Q 005140 358 LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV--SDCKM---------YWQSSGD---- 422 (712)
Q Consensus 358 ~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~---------~~s~~g~---- 422 (712)
.|...|+|+.|--+| +|++ ++.|.++++|.-. .+..++....+.. +...+ +|.|.|.
T Consensus 245 gHT~~VTCvrwGG~g-liyS-----gS~DrtIkvw~a~--dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~ 316 (480)
T KOG0271|consen 245 GHTASVTCVRWGGEG-LIYS-----GSQDRTIKVWRAL--DGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKS 316 (480)
T ss_pred cCccceEEEEEcCCc-eEEe-----cCCCceEEEEEcc--chhHHHhhcccchheeeeeccchhhhhccccccccccCCC
Confidence 999999999997654 5555 7788887776543 2222221111111 11000 2334443
Q ss_pred ---------------------EEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEE
Q 005140 423 ---------------------YLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVI 481 (712)
Q Consensus 423 ---------------------~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~ 481 (712)
.|++++++.+ +.+|+-.....|+ ..+.+|..-|+.+.||||++++|++
T Consensus 317 ~se~~~~Al~rY~~~~~~~~erlVSgsDd~t---------lflW~p~~~kkpi--~rmtgHq~lVn~V~fSPd~r~IASa 385 (480)
T KOG0271|consen 317 FSEEQKKALERYEAVLKDSGERLVSGSDDFT---------LFLWNPFKSKKPI--TRMTGHQALVNHVSFSPDGRYIASA 385 (480)
T ss_pred hHHHHHHHHHHHHHhhccCcceeEEecCCce---------EEEecccccccch--hhhhchhhheeeEEECCCccEEEEe
Confidence 4888888877 6777765544443 3567999999999999999999999
Q ss_pred EcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccc
Q 005140 482 HGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFM 557 (712)
Q Consensus 482 ~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~ 557 (712)
+-|. .|++|+.++++ .+.++.+| .|..++||.|.++|++++. |.+|++|++++.++... +|...
T Consensus 386 SFDk---SVkLW~g~tGk------~lasfRGHv~~VYqvawsaDsRLlVS~Sk---DsTLKvw~V~tkKl~~DLpGh~DE 453 (480)
T KOG0271|consen 386 SFDK---SVKLWDGRTGK------FLASFRGHVAAVYQVAWSADSRLLVSGSK---DSTLKVWDVRTKKLKQDLPGHADE 453 (480)
T ss_pred eccc---ceeeeeCCCcc------hhhhhhhccceeEEEEeccCccEEEEcCC---CceEEEEEeeeeeecccCCCCCce
Confidence 9999 99999999887 57777777 7899999999999999999 99999999998877664 67799
Q ss_pred eeeEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 558 ATDVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 558 v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
|.++.|+|||..+++++. |..+++|.
T Consensus 454 Vf~vDwspDG~rV~sggk-----dkv~~lw~ 479 (480)
T KOG0271|consen 454 VFAVDWSPDGQRVASGGK-----DKVLRLWR 479 (480)
T ss_pred EEEEEecCCCceeecCCC-----ceEEEeec
Confidence 999999999999999999 99999995
No 4
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-37 Score=307.25 Aligned_cols=402 Identities=25% Similarity=0.455 Sum_probs=328.7
Q ss_pred ceEEEEECCeeEEEecCCCCCCCcccccCC--CcccceEEEcCCCcEEEEEecCceEEeecccCcceeeeecCCCeeEEE
Q 005140 183 DQFVIRSGTDTEVLWNDARHLKPEPVYKRS--YWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQVKLID 260 (712)
Q Consensus 183 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~--~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~~v~~i~ 260 (712)
.+|+++++.+.. +|+.+........+... ..+++..++|++|+++|.+..+.+.|++.. ....+.+.....+.++.
T Consensus 3 ~~~aVRsSe~~~-l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~~~~v~i~~~~-~~~~~lt~~~~~~~~L~ 80 (566)
T KOG2315|consen 3 LVYAVRSSEGFY-LFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSDNQVVKVFEIA-TLKVVLCVELKKTYDLL 80 (566)
T ss_pred ceEEEEccceeE-EeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEcCCeEEEEEcc-CCcEEEEeccceeeeee
Confidence 468888877655 88885544444455442 445788999999999999999999999988 55444444434899999
Q ss_pred ecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCC
Q 005140 261 FSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKN 340 (712)
Q Consensus 261 ~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~ 340 (712)
|||.|.||.|.-.-....+.......+.+|++.++.....+...... + | +++||. |+.+.|....+
T Consensus 81 fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~----------~--W-~~qfs~-dEsl~arlv~n 146 (566)
T KOG2315|consen 81 FSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQN----------G--W-VPQFSI-DESLAARLVSN 146 (566)
T ss_pred ecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhc----------C--c-cccccc-chhhhhhhhcc
Confidence 99999999988766555555555567999999996554444433322 1 8 599999 99999998999
Q ss_pred eEEEEEcCCceecccccccccCeeeEEECCC--CCeEEEEeecCCCCCCCeEEEEEecCC---ccceeeeeeeeecceeE
Q 005140 341 MISVYETESFTLIDKKSLKVENVMDFSWSPT--DPIISLFVPELGGGNQPARVSLVQIPS---KEELRQKNLFSVSDCKM 415 (712)
Q Consensus 341 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~--~~~la~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~ 415 (712)
.+.+|++.+.+.+.. .++..++..+.+||. -.++|+++|+. ++.+..+.+|..+. ...+..++++..+.+.+
T Consensus 147 ev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe~--kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm 223 (566)
T KOG2315|consen 147 EVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPEK--KGAPASVRIYKYPEEGQHQPVANKSFFKADKVQM 223 (566)
T ss_pred eEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccCC--CCCCcEEEEeccccccccchhhhccccccceeEE
Confidence 999999998665543 377889999999997 47899999988 77777777777763 34677889999999999
Q ss_pred EECcCCCEE-EEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEE
Q 005140 416 YWQSSGDYL-AVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYS 494 (712)
Q Consensus 416 ~~s~~g~~l-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d 494 (712)
.|++-|.-| +..+.+-.+++.+||++..||.+...+. ...+.+ ...++|+++.|+|+|+.|+++.+-.+. .+.|||
T Consensus 224 ~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~-s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPA-kvtifn 300 (566)
T KOG2315|consen 224 KWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE-SVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPA-KVTIFN 300 (566)
T ss_pred EeccCCceEEEEEEEeecCCCccccccceEEEEEecCc-eEEEec-CCCCCceEEEECCCCCEEEEEEecccc-eEEEEc
Confidence 999999854 4566677788999999999998887632 334455 458999999999999999999987765 899999
Q ss_pred eecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEE
Q 005140 495 MRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAV 574 (712)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s 574 (712)
++ +.++..+..++.+++.|+|.|++|++++.|+..|.+.|||..+.+++.+......+-+.|+|||+||+|++
T Consensus 301 lr-------~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 301 LR-------GKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTAT 373 (566)
T ss_pred CC-------CCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEe
Confidence 84 34899999999999999999999999999999999999999999999998888889999999999999999
Q ss_pred cc-ceeccccEEEEEecCceeeeeccc-ceeeeEEecCCCC
Q 005140 575 TS-VHEMENGFNIWSFNGKLLYRTLKD-HFFQFLWRPRPPS 613 (712)
Q Consensus 575 ~~-~~~~d~~v~iw~~~g~~~~~~~~~-~i~~~~w~p~~~~ 613 (712)
.+ +++.||+++||++.|.+++..+.. .++++.|+|...-
T Consensus 374 TaPRlrvdNg~KiwhytG~~l~~~~f~sEL~qv~W~P~~~~ 414 (566)
T KOG2315|consen 374 TAPRLRVDNGIKIWHYTGSLLHEKMFKSELLQVEWRPFNDK 414 (566)
T ss_pred ccccEEecCCeEEEEecCceeehhhhhHhHhheeeeecCCc
Confidence 98 899999999999999999988877 5999999986543
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.2e-39 Score=304.31 Aligned_cols=312 Identities=17% Similarity=0.294 Sum_probs=262.3
Q ss_pred CCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC
Q 005140 253 HPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 331 (712)
Q Consensus 253 ~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg 331 (712)
|.+ |.|++|||+|++||+|+.| .++++||+.+..++.+.++|..-+. +++||| ||
T Consensus 114 H~e~Vl~~~fsp~g~~l~tGsGD----------~TvR~WD~~TeTp~~t~KgH~~WVl-------------cvawsP-Dg 169 (480)
T KOG0271|consen 114 HGEAVLSVQFSPTGSRLVTGSGD----------TTVRLWDLDTETPLFTCKGHKNWVL-------------CVAWSP-DG 169 (480)
T ss_pred CCCcEEEEEecCCCceEEecCCC----------ceEEeeccCCCCcceeecCCccEEE-------------EEEECC-Cc
Confidence 444 9999999999999999999 9999999999999999999998764 899999 99
Q ss_pred CEEEEec-CCeEEEEEcCCceecc-cccccccCeeeEEECCC-----CCeEEEEeecCCCCCCCeEEEEEecCCccceee
Q 005140 332 KYFAKLG-KNMISVYETESFTLID-KKSLKVENVMDFSWSPT-----DPIISLFVPELGGGNQPARVSLVQIPSKEELRQ 404 (712)
Q Consensus 332 ~~la~~~-d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~sp~-----~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (712)
+.||+++ ||+|++||..+++.+. .+..|...|++++|.|- .+.||+ ++.|+.++|| ++..+..+..
T Consensus 170 k~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las-----~skDg~vrIW--d~~~~~~~~~ 242 (480)
T KOG0271|consen 170 KKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLAS-----SSKDGSVRIW--DTKLGTCVRT 242 (480)
T ss_pred chhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceec-----ccCCCCEEEE--EccCceEEEE
Confidence 9999999 9999999999887654 35678888999999764 678888 7788887765 4555556666
Q ss_pred eeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEe-----------e
Q 005140 405 KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWE-----------P 473 (712)
Q Consensus 405 ~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~s-----------p 473 (712)
...+.....++.|.-+| +|++++.|.+ +++|+.... . ...++.+|...|+.++.| |
T Consensus 243 lsgHT~~VTCvrwGG~g-liySgS~Drt---------Ikvw~a~dG-~--~~r~lkGHahwvN~lalsTdy~LRtgaf~~ 309 (480)
T KOG0271|consen 243 LSGHTASVTCVRWGGEG-LIYSGSQDRT---------IKVWRALDG-K--LCRELKGHAHWVNHLALSTDYVLRTGAFDH 309 (480)
T ss_pred eccCccceEEEEEcCCc-eEEecCCCce---------EEEEEccch-h--HHHhhcccchheeeeeccchhhhhcccccc
Confidence 66677777888887665 7888888887 899987652 2 224577899999998877 3
Q ss_pred CCC-------------------------EEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCe
Q 005140 474 KGH-------------------------RFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRF 526 (712)
Q Consensus 474 ~g~-------------------------~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~ 526 (712)
.++ ++++++.|. ++.+|+...... ++..+.+| -|+.+.||||+++
T Consensus 310 t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~---tlflW~p~~~kk-----pi~rmtgHq~lVn~V~fSPd~r~ 381 (480)
T KOG0271|consen 310 TGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDF---TLFLWNPFKSKK-----PITRMTGHQALVNHVSFSPDGRY 381 (480)
T ss_pred ccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCc---eEEEeccccccc-----chhhhhchhhheeeEEECCCccE
Confidence 343 499999998 999999754332 56666666 4899999999999
Q ss_pred EEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCceeeee---cccc
Q 005140 527 IVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRT---LKDH 601 (712)
Q Consensus 527 l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~---~~~~ 601 (712)
+++++. |..|++|+-.+|+.+.+ +|...|..++||.|.+.|++++. |.++++|++..+.+... |.+.
T Consensus 382 IASaSF---DkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~Sk-----DsTLKvw~V~tkKl~~DLpGh~DE 453 (480)
T KOG0271|consen 382 IASASF---DKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSK-----DSTLKVWDVRTKKLKQDLPGHADE 453 (480)
T ss_pred EEEeec---ccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCC-----CceEEEEEeeeeeecccCCCCCce
Confidence 999999 99999999999999987 67899999999999999999999 99999999997766644 6689
Q ss_pred eeeeEEecCCCCCCChhhHHHHH
Q 005140 602 FFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 602 i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
|+.+.|+|+|..+++++.|+.++
T Consensus 454 Vf~vDwspDG~rV~sggkdkv~~ 476 (480)
T KOG0271|consen 454 VFAVDWSPDGQRVASGGKDKVLR 476 (480)
T ss_pred EEEEEecCCCceeecCCCceEEE
Confidence 99999999999999999887654
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.6e-36 Score=289.08 Aligned_cols=275 Identities=17% Similarity=0.309 Sum_probs=243.0
Q ss_pred CCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee-cCC-CeeEEEecCC--CCEEEEEcCCCCCCCcCCCcc
Q 005140 211 RSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-AHP-QVKLIDFSPG--EKYLVTYSSHEPSNPRDANRV 285 (712)
Q Consensus 211 ~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~~-~v~~i~~Spd--g~~l~t~s~d~~~~~~~~~~~ 285 (712)
+...+++.+.||+|++.||||+-+| ++||+.. +...+.++ .|. .|.++.|+|. +..|||++.| |
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~-~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~D----------g 241 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVP-QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASAD----------G 241 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecC-CcceeEEEeccccceeeEEEccCCCccceeeeccC----------C
Confidence 4557889999999999999999999 7799999 77777766 354 5999999997 6799999999 9
Q ss_pred EEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCee
Q 005140 286 VINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVM 364 (712)
Q Consensus 286 ~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~ 364 (712)
++++|++.+..++..+.+|...+. .++|.| +|+||++++ |.+-++||+.++..+-....|..+|.
T Consensus 242 tvklw~~~~e~~l~~l~gH~~RVs-------------~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~ 307 (459)
T KOG0272|consen 242 TVKLWKLSQETPLQDLEGHLARVS-------------RVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVF 307 (459)
T ss_pred ceeeeccCCCcchhhhhcchhhhe-------------eeeecC-CCceeeecccccchhhcccccchhhHhhcccccccc
Confidence 999999988899999999988764 699999 999999999 99999999999987777778999999
Q ss_pred eEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEE
Q 005140 365 DFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFEL 444 (712)
Q Consensus 365 ~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l 444 (712)
+++|.|||..+++ ||-|..++||.... |+.
T Consensus 308 ~iaf~~DGSL~~t-----GGlD~~~RvWDlRt------------------------gr~--------------------- 337 (459)
T KOG0272|consen 308 SIAFQPDGSLAAT-----GGLDSLGRVWDLRT------------------------GRC--------------------- 337 (459)
T ss_pred eeEecCCCceeec-----cCccchhheeeccc------------------------CcE---------------------
Confidence 9999999999999 88888888775432 111
Q ss_pred EEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEcc
Q 005140 445 FRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSP 522 (712)
Q Consensus 445 ~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~sp 522 (712)
.+.+.+|...|.+++|+|+|..+|+++.|+ +++|||++... .+.+++.| -|+.+.|+|
T Consensus 338 -----------im~L~gH~k~I~~V~fsPNGy~lATgs~Dn---t~kVWDLR~r~------~ly~ipAH~nlVS~Vk~~p 397 (459)
T KOG0272|consen 338 -----------IMFLAGHIKEILSVAFSPNGYHLATGSSDN---TCKVWDLRMRS------ELYTIPAHSNLVSQVKYSP 397 (459)
T ss_pred -----------EEEecccccceeeEeECCCceEEeecCCCC---cEEEeeecccc------cceecccccchhhheEecc
Confidence 134568999999999999999999999999 99999997654 57778777 489999999
Q ss_pred -CCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 523 -SGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 523 -dg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
.|.+|+++++ |++++||...++.++.+ +|.+.|.++.++|||.+|++++. |+++++|.
T Consensus 398 ~~g~fL~Tasy---D~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~-----DRT~KLW~ 458 (459)
T KOG0272|consen 398 QEGYFLVTASY---DNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSF-----DRTIKLWR 458 (459)
T ss_pred cCCeEEEEccc---CcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEecc-----Cceeeecc
Confidence 7899999999 99999999999999886 78899999999999999999999 99999995
No 7
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.1e-34 Score=281.58 Aligned_cols=392 Identities=15% Similarity=0.245 Sum_probs=294.0
Q ss_pred CCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeee--ec--CCCeeEEEecCC
Q 005140 190 GTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMR--YA--HPQVKLIDFSPG 264 (712)
Q Consensus 190 ~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~--~~--~~~v~~i~~Spd 264 (712)
....+++-++ ........|+.|...++-..|||.|-|+|+|...| |+|||.. ....+.+ ++ ...|..|+|++|
T Consensus 37 nGksv~ir~i-~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt-~~~hiLKnef~v~aG~I~Di~Wd~d 114 (603)
T KOG0318|consen 37 NGKSVIIRNI-DNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTT-QKEHILKNEFQVLAGPIKDISWDFD 114 (603)
T ss_pred CCCEEEEEEC-CCccceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEecc-CcceeeeeeeeecccccccceeCCC
Confidence 3344445565 34445668899999999999999999999999999 9999998 4333333 32 234999999999
Q ss_pred CCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCC-EEEEec-CCeE
Q 005140 265 EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK-YFAKLG-KNMI 342 (712)
Q Consensus 265 g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~-~la~~~-d~~i 342 (712)
+++|+..+.. .++.|.+.+|| +|..+-.+.+|...+. ++.|-| ..- .+++++ |++|
T Consensus 115 s~RI~avGEG------rerfg~~F~~D--SG~SvGei~GhSr~in-------------s~~~Kp-sRPfRi~T~sdDn~v 172 (603)
T KOG0318|consen 115 SKRIAAVGEG------RERFGHVFLWD--SGNSVGEITGHSRRIN-------------SVDFKP-SRPFRIATGSDDNTV 172 (603)
T ss_pred CcEEEEEecC------ccceeEEEEec--CCCccceeeccceeEe-------------eeeccC-CCceEEEeccCCCeE
Confidence 9999887765 22348889998 7888999999988764 677877 544 688888 9999
Q ss_pred EEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeee---eeeecceeEEECc
Q 005140 343 SVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKN---LFSVSDCKMYWQS 419 (712)
Q Consensus 343 ~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~s~ 419 (712)
.+|+-+-++.-.....|..-|+++.|+|||.++++ .+.| .++++|+..+.+.+.... .+...+..+.|+|
T Consensus 173 ~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat-----~gsD--gki~iyDGktge~vg~l~~~~aHkGsIfalsWsP 245 (603)
T KOG0318|consen 173 AFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFAT-----AGSD--GKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP 245 (603)
T ss_pred EEeeCCCeeeeecccccccceeeEEECCCCCeEEE-----ecCC--ccEEEEcCCCccEEEEecCCCCccccEEEEEECC
Confidence 99999888776666677778999999999999999 4444 467788888877554443 6788889999999
Q ss_pred CCCEEEEEEccccccccccccc--E---------------EEEE------EecC--------CcceeEEEecCCCCceEE
Q 005140 420 SGDYLAVKVDRYTKTKKSTYTG--F---------------ELFR------IKER--------DIPIEVLELDNKNDKIIA 468 (712)
Q Consensus 420 ~g~~l~~~~~~~~~~~~~~~~~--~---------------~l~~------l~~~--------~~~~~~~~l~~h~~~v~~ 468 (712)
|++.+++.+.+.+.+.|..... + .+|. +... ..+.....+.+|+..|++
T Consensus 246 Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITa 325 (603)
T KOG0318|consen 246 DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITA 325 (603)
T ss_pred CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeE
Confidence 9999999999987333322111 0 0110 0000 001112334589999999
Q ss_pred EEEeeCCCEEEEEEcCCCCCeEEEEEeecccccC--------cee--------------------E--------------
Q 005140 469 FAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAG--------RVS--------------------K-------------- 506 (712)
Q Consensus 469 ~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~--------~~~--------------------~-------------- 506 (712)
++.+|++++|++++.|| .|.-|+..++.... .+. .
T Consensus 326 Ltv~~d~~~i~SgsyDG---~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~ 402 (603)
T KOG0318|consen 326 LTVSPDGKTIYSGSYDG---HINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVV 402 (603)
T ss_pred EEEcCCCCEEEeeccCc---eEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCccccccee
Confidence 99999999999999999 88888876541100 000 0
Q ss_pred -------------------------EEEeC----------CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceee-
Q 005140 507 -------------------------LTTLK----------GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETM- 550 (712)
Q Consensus 507 -------------------------~~~~~----------~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~- 550 (712)
+..+. +-...+++++|++..+++|+. ||.|+||.+....+.
T Consensus 403 ~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~---Dgkvhvysl~g~~l~e 479 (603)
T KOG0318|consen 403 KLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQ---DGKVHVYSLSGDELKE 479 (603)
T ss_pred ecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecc---cceEEEEEecCCcccc
Confidence 00000 001346889999999999998 999999999975543
Q ss_pred ---eeccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCceeee----ecccceeeeEEecCCCCCCChhhHHHH
Q 005140 551 ---ATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYR----TLKDHFFQFLWRPRPPSFLTPEKEEEI 623 (712)
Q Consensus 551 ---~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~----~~~~~i~~~~w~p~~~~l~s~~~d~~i 623 (712)
...|.+.++++++||||.|||++.. .+.+.+|+...+.... .|..+|.+++|+|+...++|++-|..|
T Consensus 480 e~~~~~h~a~iT~vaySpd~~yla~~Da-----~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~V 554 (603)
T KOG0318|consen 480 EAKLLEHRAAITDVAYSPDGAYLAAGDA-----SRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNV 554 (603)
T ss_pred eeeeecccCCceEEEECCCCcEEEEecc-----CCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceE
Confidence 3367799999999999999999999 7999999998765542 388999999999999999999988765
No 8
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5.9e-34 Score=278.50 Aligned_cols=394 Identities=16% Similarity=0.232 Sum_probs=281.3
Q ss_pred CCceEEEE-ECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec----CC
Q 005140 181 ARDQFVIR-SGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA----HP 254 (712)
Q Consensus 181 ~~~~~~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~----~~ 254 (712)
.|...+++ +.|.++.++.. ...+....+..|..-|+|+.|||||.++||++.|| +.|||.. ++..+..+. |.
T Consensus 158 sRPfRi~T~sdDn~v~ffeG-PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGk-tge~vg~l~~~~aHk 235 (603)
T KOG0318|consen 158 SRPFRIATGSDDNTVAFFEG-PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGK-TGEKVGELEDSDAHK 235 (603)
T ss_pred CCceEEEeccCCCeEEEeeC-CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCC-CccEEEEecCCCCcc
Confidence 33334444 45566668777 57777788889999999999999999999999999 8899999 888888774 55
Q ss_pred C-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCE
Q 005140 255 Q-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 333 (712)
Q Consensus 255 ~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ 333 (712)
+ |..++||||++.++|++.| .+++|||+.++++++++......- ..+- .+-|.. ..
T Consensus 236 GsIfalsWsPDs~~~~T~SaD----------kt~KIWdVs~~slv~t~~~~~~v~-----dqqv-----G~lWqk---d~ 292 (603)
T KOG0318|consen 236 GSIFALSWSPDSTQFLTVSAD----------KTIKIWDVSTNSLVSTWPMGSTVE-----DQQV-----GCLWQK---DH 292 (603)
T ss_pred ccEEEEEECCCCceEEEecCC----------ceEEEEEeeccceEEEeecCCchh-----ceEE-----EEEEeC---Ce
Confidence 4 9999999999999999999 999999999999999987765411 0111 245533 46
Q ss_pred EEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeee-eeeeec
Q 005140 334 FAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK-NLFSVS 411 (712)
Q Consensus 334 la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~ 411 (712)
|++.+ +|.|.+++...+..+.....|...|+++..+|++++|.+ ++.|+ .|..|+..+...-+.. ..+...
T Consensus 293 lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~S-----gsyDG--~I~~W~~~~g~~~~~~g~~h~nq 365 (603)
T KOG0318|consen 293 LITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYS-----GSYDG--HINSWDSGSGTSDRLAGKGHTNQ 365 (603)
T ss_pred EEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEe-----eccCc--eEEEEecCCccccccccccccce
Confidence 66666 999999999999888888899999999999999999998 55555 4556665544322111 112222
Q ss_pred ceeEEECcCCCEEEEEEccccccc---ccccccEE---------------------------EEEEecCCcceeEEEecC
Q 005140 412 DCKMYWQSSGDYLAVKVDRYTKTK---KSTYTGFE---------------------------LFRIKERDIPIEVLELDN 461 (712)
Q Consensus 412 ~~~~~~s~~g~~l~~~~~~~~~~~---~~~~~~~~---------------------------l~~l~~~~~~~~~~~l~~ 461 (712)
+..+.-+..+.++.++.++..+.. ...++.-. +..++.... ...+.+
T Consensus 366 I~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~-~~~~~~-- 442 (603)
T KOG0318|consen 366 IKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTK-VSSIPI-- 442 (603)
T ss_pred EEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCc-ceeecc--
Confidence 333333333333333333221100 00000000 001110000 001111
Q ss_pred CCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEE-EeCCCceeEEEEccCCCeEEEEeccCCCceEE
Q 005140 462 KNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLT-TLKGKQANALFWSPSGRFIVLAGLKGFNGQLE 540 (712)
Q Consensus 462 h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~ 540 (712)
.....+++++|+++.+|+++.|+ .|+||.+...... .... .-+..+++++++||||.||+++.. .+.+.
T Consensus 443 -~y~~s~vAv~~~~~~vaVGG~Dg---kvhvysl~g~~l~---ee~~~~~h~a~iT~vaySpd~~yla~~Da---~rkvv 512 (603)
T KOG0318|consen 443 -GYESSAVAVSPDGSEVAVGGQDG---KVHVYSLSGDELK---EEAKLLEHRAAITDVAYSPDGAYLAAGDA---SRKVV 512 (603)
T ss_pred -ccccceEEEcCCCCEEEEecccc---eEEEEEecCCccc---ceeeeecccCCceEEEECCCCcEEEEecc---CCcEE
Confidence 34567899999999999999999 9999999754421 1212 222457999999999999999988 99999
Q ss_pred EEECCcceeeee---ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCc--e--eeeecccceeeeEEecCCCC
Q 005140 541 FYNVDELETMAT---AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK--L--LYRTLKDHFFQFLWRPRPPS 613 (712)
Q Consensus 541 iwd~~~~~~~~~---~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~--~--~~~~~~~~i~~~~w~p~~~~ 613 (712)
+||..+.+.... .|...|.+++|||+...+|+|+. |..|.||++... . +...|...++.+.|--+ ..
T Consensus 513 ~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSl-----Dt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde-~t 586 (603)
T KOG0318|consen 513 LYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSL-----DTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDE-ST 586 (603)
T ss_pred EEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccc-----cceEEEEEccChhhheEeccccccCceeEEEecC-ce
Confidence 999998777432 68899999999999999999999 999999998743 2 22337777999999855 56
Q ss_pred CCChhhHHHHHH
Q 005140 614 FLTPEKEEEIAK 625 (712)
Q Consensus 614 l~s~~~d~~i~~ 625 (712)
++|.++|..||.
T Consensus 587 vvSsG~Da~iK~ 598 (603)
T KOG0318|consen 587 VVSSGQDANIKV 598 (603)
T ss_pred EEeccCcceeEE
Confidence 888888888763
No 9
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.4e-33 Score=283.20 Aligned_cols=396 Identities=14% Similarity=0.236 Sum_probs=299.8
Q ss_pred CCCCccchhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCceEEeecccCc
Q 005140 166 YTPGENLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWGGANTF 245 (712)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~ 245 (712)
+....|+.....+|+|.-. ++.-..+...+-+.. ...+...-.-+..|.|+.|||||+++|.+..+-+.||...+..
T Consensus 52 ~e~~~NI~~ialSp~g~ll-lavdE~g~~~lvs~~--~r~Vlh~f~fk~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~ 128 (893)
T KOG0291|consen 52 LETRYNITRIALSPDGTLL-LAVDERGRALLVSLL--SRSVLHRFNFKRGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEI 128 (893)
T ss_pred eecCCceEEEEeCCCceEE-EEEcCCCcEEEEecc--cceeeEEEeecCccceEEECCCCcEEEEEecceeEEEecCcch
Confidence 4445667777777887733 233333344444441 2222222223468999999999999999999989999887333
Q ss_pred c-------eeeee--cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCce--eeeccCCCcccccCCCC
Q 005140 246 N-------RLMRY--AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKV--MRDFKGSADEFAVGGTG 314 (712)
Q Consensus 246 ~-------~~~~~--~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~--~~~~~~~~~~~~~~~~~ 314 (712)
+ +..++ +...|.++.||.|.++|++|+.| .+++||.+...+- ...+.+|...+.
T Consensus 129 ~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD----------~s~rl~~v~~~k~~~~~~l~gHkd~Vv----- 193 (893)
T KOG0291|consen 129 KNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRD----------LSARLFGVDGNKNLFTYALNGHKDYVV----- 193 (893)
T ss_pred hcccCcceEeeeecCCccceeEEEeccCCceEEecccc----------ceEEEEEeccccccceEeccCCCcceE-----
Confidence 3 11222 23459999999999999999999 8999999876655 667888888773
Q ss_pred CcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCC-----------------------cee-----cc----cccc--c
Q 005140 315 GVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETES-----------------------FTL-----ID----KKSL--K 359 (712)
Q Consensus 315 ~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~-----------------------~~~-----~~----~~~~--~ 359 (712)
.+.|.. +..-+.+.+ ||.+.+|.... ++. .. +.-+ .
T Consensus 194 --------acfF~~-~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~ 264 (893)
T KOG0291|consen 194 --------ACFFGA-NSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQN 264 (893)
T ss_pred --------EEEecc-CcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeeccc
Confidence 567888 888888888 99999998761 000 00 0000 1
Q ss_pred ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccccc
Q 005140 360 VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTY 439 (712)
Q Consensus 360 ~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~ 439 (712)
...|++.+|++..+.|++ +-..+...+|++|....+....+.......+.|+..|.+|++++.. .
T Consensus 265 ~~kvtaa~fH~~t~~lvv-------gFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~k--------l 329 (893)
T KOG0291|consen 265 SSKVTAAAFHKGTNLLVV-------GFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSK--------L 329 (893)
T ss_pred ccceeeeeccCCceEEEE-------EecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCc--------c
Confidence 135889999999999998 5555667799999999888888877778888999999999998775 2
Q ss_pred ccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeE
Q 005140 440 TGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANA 517 (712)
Q Consensus 440 ~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~ 517 (712)
+.+.+|...... ..+...+|...++++++||||+++|+|+.|+ .|+|||..++- .+.++..| .++.
T Consensus 330 gQLlVweWqsEs---YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDg---KVKvWn~~Sgf------C~vTFteHts~Vt~ 397 (893)
T KOG0291|consen 330 GQLLVWEWQSES---YVLKQQGHSDRITSLAYSPDGQLIATGAEDG---KVKVWNTQSGF------CFVTFTEHTSGVTA 397 (893)
T ss_pred ceEEEEEeeccc---eeeeccccccceeeEEECCCCcEEEeccCCC---cEEEEeccCce------EEEEeccCCCceEE
Confidence 347888887543 3356679999999999999999999999999 99999997654 56666655 6889
Q ss_pred EEEccCCCeEEEEeccCCCceEEEEECCc--------------------------------------------ceeee--
Q 005140 518 LFWSPSGRFIVLAGLKGFNGQLEFYNVDE--------------------------------------------LETMA-- 551 (712)
Q Consensus 518 l~~spdg~~l~~~~~~~~dg~v~iwd~~~--------------------------------------------~~~~~-- 551 (712)
+.|+..|+.+++++. ||+|+.||+.. |+++.
T Consensus 398 v~f~~~g~~llssSL---DGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiL 474 (893)
T KOG0291|consen 398 VQFTARGNVLLSSSL---DGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDIL 474 (893)
T ss_pred EEEEecCCEEEEeec---CCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehh
Confidence 999999999999988 99988888752 33332
Q ss_pred eccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCc--eeeee-cccceeeeEEecCCCCCCChhhHHHH
Q 005140 552 TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK--LLYRT-LKDHFFQFLWRPRPPSFLTPEKEEEI 623 (712)
Q Consensus 552 ~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~--~~~~~-~~~~i~~~~w~p~~~~l~s~~~d~~i 623 (712)
++|.++|.+++|+|+|..|++++. |.+|++|++-+. .+... ....+..++|+|+|+.|+.+.-|+.|
T Consensus 475 sGHEgPVs~l~f~~~~~~LaS~SW-----DkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqI 544 (893)
T KOG0291|consen 475 SGHEGPVSGLSFSPDGSLLASGSW-----DKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQI 544 (893)
T ss_pred cCCCCcceeeEEccccCeEEeccc-----cceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceE
Confidence 378899999999999999999999 999999997644 33333 44679999999999999988877765
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.2e-33 Score=257.08 Aligned_cols=279 Identities=19% Similarity=0.274 Sum_probs=236.9
Q ss_pred ccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCC--CeeEEEecCCCCEEEEEcCCCCCCCcCCC
Q 005140 207 PVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHP--QVKLIDFSPGEKYLVTYSSHEPSNPRDAN 283 (712)
Q Consensus 207 ~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~--~v~~i~~Spdg~~l~t~s~d~~~~~~~~~ 283 (712)
+.+++|...|+++.|++|+++|++++.|| ++|||.- +...+..++.+ -|..++|||.|+++|.|+.|
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~-TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLd--------- 118 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSF-TTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLD--------- 118 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcc-cccceeEEecCceeEEEEEECCCCCeEEecCcC---------
Confidence 67899999999999999999999999999 8899998 66666666554 49999999999999999999
Q ss_pred ccEEEEEEccCC------ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceeccccc
Q 005140 284 RVVINIFDVRTG------KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKS 357 (712)
Q Consensus 284 ~~~I~iwd~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~ 357 (712)
....||++.+. ...+.+.+|..-.. ++.|.+ |+++|...+|.+..+||+++++.+....
T Consensus 119 -N~Csiy~ls~~d~~g~~~v~r~l~gHtgylS-------------cC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~ 183 (343)
T KOG0286|consen 119 -NKCSIYPLSTRDAEGNVRVSRELAGHTGYLS-------------CCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFH 183 (343)
T ss_pred -ceeEEEecccccccccceeeeeecCccceeE-------------EEEEcC-CCceEecCCCceEEEEEcccceEEEEec
Confidence 78899999755 35677889988764 788888 7776666669999999999999998888
Q ss_pred ccccCeeeEEECC-CCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccc
Q 005140 358 LKVENVMDFSWSP-TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKK 436 (712)
Q Consensus 358 ~~~~~v~~~~~sp-~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~ 436 (712)
.|...|.+++++| +++.+++ |+.|...++|..
T Consensus 184 GH~gDV~slsl~p~~~ntFvS-----g~cD~~aklWD~------------------------------------------ 216 (343)
T KOG0286|consen 184 GHTGDVMSLSLSPSDGNTFVS-----GGCDKSAKLWDV------------------------------------------ 216 (343)
T ss_pred CCcccEEEEecCCCCCCeEEe-----cccccceeeeec------------------------------------------
Confidence 9999999999999 8888888 777777665543
Q ss_pred cccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC----C
Q 005140 437 STYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK----G 512 (712)
Q Consensus 437 ~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~----~ 512 (712)
+.. .....+.+|...|+++.|.|+|.-|++++.|+ +.++||++... .+..+. .
T Consensus 217 -----------R~~---~c~qtF~ghesDINsv~ffP~G~afatGSDD~---tcRlyDlRaD~------~~a~ys~~~~~ 273 (343)
T KOG0286|consen 217 -----------RSG---QCVQTFEGHESDINSVRFFPSGDAFATGSDDA---TCRLYDLRADQ------ELAVYSHDSII 273 (343)
T ss_pred -----------cCc---ceeEeecccccccceEEEccCCCeeeecCCCc---eeEEEeecCCc------EEeeeccCccc
Confidence 221 12255779999999999999999999999999 99999998765 333333 2
Q ss_pred CceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 513 KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 513 ~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
.++++++||-.|++|+.|.. |.++.+||.-.++.+.. +|...|+++..+|||.-|++++. |..++||.
T Consensus 274 ~gitSv~FS~SGRlLfagy~---d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSW-----Ds~lriW~ 343 (343)
T KOG0286|consen 274 CGITSVAFSKSGRLLFAGYD---DFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSW-----DSTLRIWA 343 (343)
T ss_pred CCceeEEEcccccEEEeeec---CCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecch-----hHheeecC
Confidence 36899999999999999877 99999999887776653 88899999999999999999999 99999994
No 11
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.6e-33 Score=284.77 Aligned_cols=426 Identities=13% Similarity=0.159 Sum_probs=323.9
Q ss_pred eEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCC-CeeEEEe
Q 005140 184 QFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHP-QVKLIDF 261 (712)
Q Consensus 184 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~-~v~~i~~ 261 (712)
.++.++.|+++++||......+......|...|++++|++|+.-++++++|. +.|||.. ..+.+..++.. .+.++.+
T Consensus 163 lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~-~~~~l~~lp~ye~~E~vv~ 241 (775)
T KOG0319|consen 163 LLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLV-QYKKLKTLPLYESLESVVR 241 (775)
T ss_pred heeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehh-hhhhhheechhhheeeEEE
Confidence 4466777899999999434445778899999999999999999999999999 5699998 78877777644 4778888
Q ss_pred cCC-----CCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcc-cc----------------------cC--
Q 005140 262 SPG-----EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADE-FA----------------------VG-- 311 (712)
Q Consensus 262 Spd-----g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~-~~----------------------~~-- 311 (712)
-++ |.+++|++.+ |.+++||..+++++.....+... .. +.
T Consensus 242 l~~~~~~~~~~~~TaG~~----------g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~ 311 (775)
T KOG0319|consen 242 LREELGGKGEYIITAGGS----------GVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDED 311 (775)
T ss_pred echhcCCcceEEEEecCC----------ceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEcc
Confidence 777 6799999999 89999998777654433222100 00 00
Q ss_pred ---CCCCcCC---CCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCC
Q 005140 312 ---GTGGVAG---VSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGG 384 (712)
Q Consensus 312 ---~~~~~~~---~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~ 384 (712)
......| ......-|.| ..+++|.++ ...+++|++++.... ....|.+.|.+++...+|-+|++ ++
T Consensus 312 ~l~i~k~ivG~ndEI~Dm~~lG~-e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat-----~s 384 (775)
T KOG0319|consen 312 ELTIVKQIVGYNDEILDMKFLGP-EESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLAT-----GS 384 (775)
T ss_pred ccEEehhhcCCchhheeeeecCC-ccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEE-----ec
Confidence 0000000 0011234566 778888888 899999998876654 34578888999996667788998 99
Q ss_pred CCCCeEEEEEecCCcc--ceeeeeeeeecceeEEECcCC-CEEEEEEcccccccccccccEEEEEEecCCcceeEE----
Q 005140 385 GNQPARVSLVQIPSKE--ELRQKNLFSVSDCKMYWQSSG-DYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVL---- 457 (712)
Q Consensus 385 ~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~g-~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~---- 457 (712)
.|.++++|.++....+ .+...+.+......+..+..| .+|++++.|.+ +++|.+.........+
T Consensus 385 KD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~t---------lK~W~l~~s~~~~~~~~~~~ 455 (775)
T KOG0319|consen 385 KDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCT---------LKLWDLPKSKETAFPIVLTC 455 (775)
T ss_pred CCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCce---------EEEecCCCcccccccceehh
Confidence 9999999999544332 444555566666666666655 47788888877 8999987621111112
Q ss_pred --EecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEecc
Q 005140 458 --ELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLK 533 (712)
Q Consensus 458 --~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~ 533 (712)
....|...|++++.+|+.+.||+++.|. +.+||++... ....++.+| .+.++.|+|..+.+++++.
T Consensus 456 ~~t~~aHdKdIN~Vaia~ndkLiAT~SqDk---taKiW~le~~------~l~~vLsGH~RGvw~V~Fs~~dq~laT~Sg- 525 (775)
T KOG0319|consen 456 RYTERAHDKDINCVAIAPNDKLIATGSQDK---TAKIWDLEQL------RLLGVLSGHTRGVWCVSFSKNDQLLATCSG- 525 (775)
T ss_pred hHHHHhhcccccceEecCCCceEEeccccc---ceeeecccCc------eEEEEeeCCccceEEEEeccccceeEeccC-
Confidence 2347999999999999999999999999 9999999732 377888877 6899999999999999998
Q ss_pred CCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecC-ceeeee--cccceeeeEEe
Q 005140 534 GFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG-KLLYRT--LKDHFFQFLWR 608 (712)
Q Consensus 534 ~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g-~~~~~~--~~~~i~~~~w~ 608 (712)
|++|+||.++++.++.+ +|...|..+.|-.+|+.|++++. ||-++||++.. .++... |.++||.++-+
T Consensus 526 --D~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~a-----dGliKlWnikt~eC~~tlD~H~DrvWaL~~~ 598 (775)
T KOG0319|consen 526 --DKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGA-----DGLIKLWNIKTNECEMTLDAHNDRVWALSVS 598 (775)
T ss_pred --CceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccC-----CCcEEEEeccchhhhhhhhhccceeEEEeec
Confidence 99999999999999987 67789999999999999999999 99999999984 444443 88999999999
Q ss_pred cCCCCCCChhhHHHHHHHHHHhhhhhhhhhHHHHhhhhHHHHHHHHHHHH
Q 005140 609 PRPPSFLTPEKEEEIAKNLKKYSKKYEAEDQDVSMQLSEQEREKRRSLKN 658 (712)
Q Consensus 609 p~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (712)
|...+++|++.|+.|. ++++..++++.++.+++++..++.+++..
T Consensus 599 ~~~~~~~tgg~Dg~i~-----~wkD~Te~~~~ee~~K~~eaieq~QeL~n 643 (775)
T KOG0319|consen 599 PLLDMFVTGGGDGRII-----FWKDVTEEEQNEEQEKREEAIEQEQELEN 643 (775)
T ss_pred CccceeEecCCCeEEE-----EeecCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999886 56666666666555555555555555443
No 12
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.5e-32 Score=277.63 Aligned_cols=399 Identities=15% Similarity=0.223 Sum_probs=278.7
Q ss_pred CCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee-cCCC-e
Q 005140 180 KARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-AHPQ-V 256 (712)
Q Consensus 180 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~~~-v 256 (712)
+....++++|.||.+.+|+. ........+.+|...|+++.|+..|..||+|+.|+ |+|||+- ...-+.++ +|.. |
T Consensus 75 ~d~l~lAVGYaDGsVqif~~-~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV-~E~Gl~rL~GHkd~i 152 (888)
T KOG0306|consen 75 DDILLLAVGYADGSVQIFSL-ESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLV-GEEGLFRLRGHKDSI 152 (888)
T ss_pred CCcceEEEEecCceEEeecc-CCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEec-cceeeEEeecchHHH
Confidence 34456799999999999999 44477788999999999999999999999999999 8899998 44445555 3554 8
Q ss_pred eEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccc-----------cCCCC-----------
Q 005140 257 KLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFA-----------VGGTG----------- 314 (712)
Q Consensus 257 ~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~-----------~~~~~----------- 314 (712)
+..-|..+.++|++.+.| +.|++||+.+..+..+...|...+- .+..+
T Consensus 153 T~~~F~~~~~~lvS~sKD----------s~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~ 222 (888)
T KOG0306|consen 153 TQALFLNGDSFLVSVSKD----------SMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFED 222 (888)
T ss_pred hHHhccCCCeEEEEeccC----------ceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeeccc
Confidence 889999889999999999 8899999866554443333322220 00000
Q ss_pred --------------------------------------------------------------------------------
Q 005140 315 -------------------------------------------------------------------------------- 314 (712)
Q Consensus 315 -------------------------------------------------------------------------------- 314 (712)
T Consensus 223 D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~ 302 (888)
T KOG0306|consen 223 DEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDD 302 (888)
T ss_pred ccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccc
Confidence
Q ss_pred ------------------------------Cc---------CCCCc----------------------------CeEEec
Q 005140 315 ------------------------------GV---------AGVSW----------------------------PVFRWG 327 (712)
Q Consensus 315 ------------------------------~~---------~~~~~----------------------------~~~~~s 327 (712)
++ +.++| ..+++|
T Consensus 303 v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS 382 (888)
T KOG0306|consen 303 VEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVS 382 (888)
T ss_pred hhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEee
Confidence 00 00000 022223
Q ss_pred CCCCCEEEEecCCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeee
Q 005140 328 GGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL 407 (712)
Q Consensus 328 ~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 407 (712)
. +...+++++.+++.||+..+++.+.+. ....+.+..|.|.++++++ +...+.+-+|++.+...+.....
T Consensus 383 ~-d~~~~~Sga~~SikiWn~~t~kciRTi--~~~y~l~~~Fvpgd~~Iv~-------G~k~Gel~vfdlaS~~l~Eti~A 452 (888)
T KOG0306|consen 383 S-DSILLASGAGESIKIWNRDTLKCIRTI--TCGYILASKFVPGDRYIVL-------GTKNGELQVFDLASASLVETIRA 452 (888)
T ss_pred c-CceeeeecCCCcEEEEEccCcceeEEe--ccccEEEEEecCCCceEEE-------eccCCceEEEEeehhhhhhhhhc
Confidence 2 233333333334444444433333211 1112333344444444444 22223333344433333333334
Q ss_pred eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEec----CCcc--------eeEEEecCCCCceEEEEEeeCC
Q 005140 408 FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKE----RDIP--------IEVLELDNKNDKIIAFAWEPKG 475 (712)
Q Consensus 408 ~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~----~~~~--------~~~~~l~~h~~~v~~~~~sp~g 475 (712)
|......+..+||+..+++++.|.+ +.+|+... .+.. ..++++ ...|.|+.+||||
T Consensus 453 HdgaIWsi~~~pD~~g~vT~saDkt---------VkfWdf~l~~~~~gt~~k~lsl~~~rtLel---~ddvL~v~~Spdg 520 (888)
T KOG0306|consen 453 HDGAIWSISLSPDNKGFVTGSADKT---------VKFWDFKLVVSVPGTQKKVLSLKHTRTLEL---EDDVLCVSVSPDG 520 (888)
T ss_pred cccceeeeeecCCCCceEEecCCcE---------EEEEeEEEEeccCcccceeeeeccceEEec---cccEEEEEEcCCC
Confidence 5556667778999999999999988 67776542 1111 123445 7889999999999
Q ss_pred CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee-
Q 005140 476 HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT- 552 (712)
Q Consensus 476 ~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~- 552 (712)
++||++--|. +|++|-+++-+ ..-++-+| ||.|+..|||++.+++|+. |.+|++|-++-|.+-.+
T Consensus 521 k~LaVsLLdn---TVkVyflDtlK------FflsLYGHkLPV~smDIS~DSklivTgSA---DKnVKiWGLdFGDCHKS~ 588 (888)
T KOG0306|consen 521 KLLAVSLLDN---TVKVYFLDTLK------FFLSLYGHKLPVLSMDISPDSKLIVTGSA---DKNVKIWGLDFGDCHKSF 588 (888)
T ss_pred cEEEEEeccC---eEEEEEeccee------eeeeecccccceeEEeccCCcCeEEeccC---CCceEEeccccchhhhhh
Confidence 9999999998 99999997654 45566666 8999999999999999999 99999999998888776
Q ss_pred -ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecC-ceee--eecccceeeeEEecCCCCCCChhhHHHHHHHHH
Q 005140 553 -AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG-KLLY--RTLKDHFFQFLWRPRPPSFLTPEKEEEIAKNLK 628 (712)
Q Consensus 553 -~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g-~~~~--~~~~~~i~~~~w~p~~~~l~s~~~d~~i~~~~~ 628 (712)
.|...|.++.|-|....+.+++. |+.|+-||-.. ..+. ..|...+++++.+|+|.+++|++.|.+||.|-+
T Consensus 589 fAHdDSvm~V~F~P~~~~FFt~gK-----D~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 589 FAHDDSVMSVQFLPKTHLFFTCGK-----DGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWER 663 (888)
T ss_pred hcccCceeEEEEcccceeEEEecC-----cceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeec
Confidence 67799999999999999999999 99999998653 2222 337789999999999999999999999986654
Q ss_pred H
Q 005140 629 K 629 (712)
Q Consensus 629 ~ 629 (712)
.
T Consensus 664 t 664 (888)
T KOG0306|consen 664 T 664 (888)
T ss_pred c
Confidence 3
No 13
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=9.3e-33 Score=266.80 Aligned_cols=318 Identities=15% Similarity=0.320 Sum_probs=262.9
Q ss_pred CCCcccceEEEcCCCc-EEEEEecCc-eEEeeccc-C----cceeeee----------cCCCeeEEEecCCCCEEEEEcC
Q 005140 211 RSYWTESFVQWSPLGT-YLATVHRQG-AAVWGGAN-T----FNRLMRY----------AHPQVKLIDFSPGEKYLVTYSS 273 (712)
Q Consensus 211 ~~~~~v~~v~~Spdg~-~lat~~~~~-i~iw~~~~-~----~~~~~~~----------~~~~v~~i~~Spdg~~l~t~s~ 273 (712)
+|...|.+.+|+|--. .||+++.+. .++|++.. . .+...+. ...+|++++|+.+|..||+|+.
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 4999999999999776 889998887 67998761 1 1111111 1235999999999999999999
Q ss_pred CCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCcee
Q 005140 274 HEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTL 352 (712)
Q Consensus 274 d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~ 352 (712)
+ |.++||+. +|.++.++..|++++. +++|+. +|.||++++ |+++.+||..++..
T Consensus 256 ~----------G~~riw~~-~G~l~~tl~~HkgPI~-------------slKWnk-~G~yilS~~vD~ttilwd~~~g~~ 310 (524)
T KOG0273|consen 256 D----------GEARIWNK-DGNLISTLGQHKGPIF-------------SLKWNK-KGTYILSGGVDGTTILWDAHTGTV 310 (524)
T ss_pred C----------cEEEEEec-CchhhhhhhccCCceE-------------EEEEcC-CCCEEEeccCCccEEEEeccCceE
Confidence 9 99999995 8999999999999874 799999 999999999 99999999999988
Q ss_pred cccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccc
Q 005140 353 IDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYT 432 (712)
Q Consensus 353 ~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~ 432 (712)
.....+|..+..++.|-.+..+.. ++.++ .|.++.+....++.....|......+.|+|.|..|+++++|.+
T Consensus 311 ~q~f~~~s~~~lDVdW~~~~~F~t------s~td~--~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~T 382 (524)
T KOG0273|consen 311 KQQFEFHSAPALDVDWQSNDEFAT------SSTDG--CIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGT 382 (524)
T ss_pred EEeeeeccCCccceEEecCceEee------cCCCc--eEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCe
Confidence 777777777767889987665544 33444 4555666666666666667888888999999999999999988
Q ss_pred cccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCC---------CEEEEEEcCCCCCeEEEEEeecccccCc
Q 005140 433 KTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG---------HRFAVIHGDSPRPDISFYSMRTAQHAGR 503 (712)
Q Consensus 433 ~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g---------~~l~~~~~d~~~~~v~i~d~~~~~~~~~ 503 (712)
++||.+...... ..+.+|...|..+.|+|.| ..+++++.|+ +|++||+..+.
T Consensus 383 ---------lkiWs~~~~~~~---~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~ds---tV~lwdv~~gv---- 443 (524)
T KOG0273|consen 383 ---------LKIWSMGQSNSV---HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDS---TVKLWDVESGV---- 443 (524)
T ss_pred ---------eEeeecCCCcch---hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCC---eEEEEEccCCc----
Confidence 899997654332 4577899999999999975 3788888898 99999998766
Q ss_pred eeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeec-cccceeeEEECCCCCEEEEEEccceec
Q 005140 504 VSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATA-EHFMATDVEWDPTGRYVATAVTSVHEM 580 (712)
Q Consensus 504 ~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~-~~~~v~~~~~spdg~~l~t~s~~~~~~ 580 (712)
+++.+..| +|.+++|||+|+|+++|+. ||.|.||+++++++++.. ..+.|..++|+.+|.+|..+..
T Consensus 444 --~i~~f~kH~~pVysvafS~~g~ylAsGs~---dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~s----- 513 (524)
T KOG0273|consen 444 --PIHTLMKHQEPVYSVAFSPNGRYLASGSL---DGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGACAS----- 513 (524)
T ss_pred --eeEeeccCCCceEEEEecCCCcEEEecCC---CCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEEEec-----
Confidence 77777555 7999999999999999998 999999999999999874 4467899999999999999988
Q ss_pred cccEEEEEec
Q 005140 581 ENGFNIWSFN 590 (712)
Q Consensus 581 d~~v~iw~~~ 590 (712)
|+.+++-|+.
T Consensus 514 d~~vcvldlr 523 (524)
T KOG0273|consen 514 DGSVCVLDLR 523 (524)
T ss_pred CCCceEEEec
Confidence 8999988763
No 14
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=9.1e-34 Score=270.34 Aligned_cols=271 Identities=16% Similarity=0.249 Sum_probs=233.2
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCC--C
Q 005140 254 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK--D 331 (712)
Q Consensus 254 ~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d--g 331 (712)
..|..+.||+|++.||||+.+ |.++||+..++..+.+|.+|...+. ++.|+| . +
T Consensus 176 rPis~~~fS~ds~~laT~sws----------G~~kvW~~~~~~~~~~l~gH~~~v~-------------~~~fhP-~~~~ 231 (459)
T KOG0272|consen 176 RPISGCSFSRDSKHLATGSWS----------GLVKVWSVPQCNLLQTLRGHTSRVG-------------AAVFHP-VDSD 231 (459)
T ss_pred CcceeeEeecCCCeEEEeecC----------CceeEeecCCcceeEEEecccccee-------------eEEEcc-CCCc
Confidence 348899999999999999999 9999999999999999999998874 789999 5 5
Q ss_pred CEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeee
Q 005140 332 KYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV 410 (712)
Q Consensus 332 ~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 410 (712)
..+|+++ ||++++|++.+-.++.....|...|..++|+|+|++|++ ++-|.+.++|....
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~T-----asfD~tWRlWD~~t-------------- 292 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGT-----ASFDSTWRLWDLET-------------- 292 (459)
T ss_pred cceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeee-----cccccchhhccccc--------------
Confidence 6899999 999999999988888888888888999999999999998 77777766554322
Q ss_pred cceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeE
Q 005140 411 SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDI 490 (712)
Q Consensus 411 ~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v 490 (712)
+. +.+...||...|.+++|.|||..+++|+.|. .-
T Consensus 293 ---------------------------------------k~---ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~---~~ 327 (459)
T KOG0272|consen 293 ---------------------------------------KS---ELLLQEGHSKGVFSIAFQPDGSLAATGGLDS---LG 327 (459)
T ss_pred ---------------------------------------ch---hhHhhcccccccceeEecCCCceeeccCccc---hh
Confidence 11 1122348999999999999999999999998 78
Q ss_pred EEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECC-
Q 005140 491 SFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDP- 565 (712)
Q Consensus 491 ~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~sp- 565 (712)
+|||++++. .+..+.+| +|.+++|||+|..|++|+. |++++|||++....+.+ .|..-|+.+.|+|
T Consensus 328 RvWDlRtgr------~im~L~gH~k~I~~V~fsPNGy~lATgs~---Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~ 398 (459)
T KOG0272|consen 328 RVWDLRTGR------CIMFLAGHIKEILSVAFSPNGYHLATGSS---DNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQ 398 (459)
T ss_pred heeecccCc------EEEEecccccceeeEeECCCceEEeecCC---CCcEEEeeecccccceecccccchhhheEeccc
Confidence 999999876 56666666 7999999999999999998 99999999998777766 6778899999999
Q ss_pred CCCEEEEEEccceeccccEEEEEecC-ceeeee--cccceeeeEEecCCCCCCChhhHHHHHHH
Q 005140 566 TGRYVATAVTSVHEMENGFNIWSFNG-KLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEIAKN 626 (712)
Q Consensus 566 dg~~l~t~s~~~~~~d~~v~iw~~~g-~~~~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i~~~ 626 (712)
.|.+|+|++. |++++||.-.+ .++... |.+.|.++..+|++..++|++-|.+||-|
T Consensus 399 ~g~fL~Tasy-----D~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW 457 (459)
T KOG0272|consen 399 EGYFLVTASY-----DNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLW 457 (459)
T ss_pred CCeEEEEccc-----CcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeec
Confidence 7889999999 99999999764 444433 77999999999999999999999988743
No 15
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.9e-31 Score=266.91 Aligned_cols=358 Identities=16% Similarity=0.291 Sum_probs=286.3
Q ss_pred CCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecC--ceEEeecccCcceeeee--cCCCe
Q 005140 181 ARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQ--GAAVWGGANTFNRLMRY--AHPQV 256 (712)
Q Consensus 181 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~--~i~iw~~~~~~~~~~~~--~~~~v 256 (712)
+-..+++.+..+...++.+ .....+..+.-....|..++|+..|.+||.|+.. .+.||++. +..-+... |...+
T Consensus 276 ~t~~lvvgFssG~f~Lyel-P~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWq-sEsYVlKQQgH~~~i 353 (893)
T KOG0291|consen 276 GTNLLVVGFSSGEFGLYEL-PDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQ-SESYVLKQQGHSDRI 353 (893)
T ss_pred CceEEEEEecCCeeEEEec-CCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEee-ccceeeeccccccce
Confidence 3346677777777778888 4666666777777889999999999999999987 38899998 44444333 34569
Q ss_pred eEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEE
Q 005140 257 KLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAK 336 (712)
Q Consensus 257 ~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~ 336 (712)
.++++||||++||||+.| +.|+|||..+|-++.+|..|...++ .++|+. .|+.+.+
T Consensus 354 ~~l~YSpDgq~iaTG~eD----------gKVKvWn~~SgfC~vTFteHts~Vt-------------~v~f~~-~g~~lls 409 (893)
T KOG0291|consen 354 TSLAYSPDGQLIATGAED----------GKVKVWNTQSGFCFVTFTEHTSGVT-------------AVQFTA-RGNVLLS 409 (893)
T ss_pred eeEEECCCCcEEEeccCC----------CcEEEEeccCceEEEEeccCCCceE-------------EEEEEe-cCCEEEE
Confidence 999999999999999999 9999999999999999999988775 799999 9999999
Q ss_pred ec-CCeEEEEEcCCceeccccccccc-CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeeccee
Q 005140 337 LG-KNMISVYETESFTLIDKKSLKVE-NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCK 414 (712)
Q Consensus 337 ~~-d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 414 (712)
.+ ||+|+.||+.............+ ...+++..|.|..++. +.-....|++|+..+++.+.....|..+...
T Consensus 410 sSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~A------G~~d~F~IfvWS~qTGqllDiLsGHEgPVs~ 483 (893)
T KOG0291|consen 410 SSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCA------GAQDSFEIFVWSVQTGQLLDILSGHEGPVSG 483 (893)
T ss_pred eecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEe------eccceEEEEEEEeecCeeeehhcCCCCccee
Confidence 99 99999999987665544433332 3678999999988874 4556778999999999999999999999999
Q ss_pred EEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEE
Q 005140 415 MYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYS 494 (712)
Q Consensus 415 ~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d 494 (712)
+.|+|.|..|++++.|.+ +++|++-.....++++.+ ...+.+++|+|+|+.+|++.-|| .|.|||
T Consensus 484 l~f~~~~~~LaS~SWDkT---------VRiW~if~s~~~vEtl~i---~sdvl~vsfrPdG~elaVaTldg---qItf~d 548 (893)
T KOG0291|consen 484 LSFSPDGSLLASGSWDKT---------VRIWDIFSSSGTVETLEI---RSDVLAVSFRPDGKELAVATLDG---QITFFD 548 (893)
T ss_pred eEEccccCeEEeccccce---------EEEEEeeccCceeeeEee---ccceeEEEEcCCCCeEEEEEecc---eEEEEE
Confidence 999999999999999988 899999887777777777 88999999999999999999999 999999
Q ss_pred eecccccCcee-------------EE---EEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeee-------
Q 005140 495 MRTAQHAGRVS-------------KL---TTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA------- 551 (712)
Q Consensus 495 ~~~~~~~~~~~-------------~~---~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~------- 551 (712)
+..+.....+. .+ ..-.+...+.+++|+||.+|++|+. ...|++|++.++-+++
T Consensus 549 ~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~---sn~iCiY~v~~~vllkkfqiS~N 625 (893)
T KOG0291|consen 549 IKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGE---SNSICIYDVPEGVLLKKFQISDN 625 (893)
T ss_pred hhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCC---cccEEEEECchhheeeeEEeccc
Confidence 87543211110 01 1112345788999999999999998 8999999987521111
Q ss_pred -------------------------e--------------------------ccccceeeEEECCCCCEEEEEEccceec
Q 005140 552 -------------------------T--------------------------AEHFMATDVEWDPTGRYVATAVTSVHEM 580 (712)
Q Consensus 552 -------------------------~--------------------------~~~~~v~~~~~spdg~~l~t~s~~~~~~ 580 (712)
+ ...-.|+++.|||+|+-+|.++.
T Consensus 626 ~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaatT----- 700 (893)
T KOG0291|consen 626 RSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAATT----- 700 (893)
T ss_pred cchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCCcCeeeeecc-----
Confidence 0 00124678999999999999998
Q ss_pred cccEEEEEecCcee
Q 005140 581 ENGFNIWSFNGKLL 594 (712)
Q Consensus 581 d~~v~iw~~~g~~~ 594 (712)
-++.||.++...+
T Consensus 701 -EGl~IYsld~~~~ 713 (893)
T KOG0291|consen 701 -EGLLIYSLDTTIL 713 (893)
T ss_pred -cceEEEecCCceE
Confidence 5788888865443
No 16
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-30 Score=235.42 Aligned_cols=281 Identities=15% Similarity=0.237 Sum_probs=225.1
Q ss_pred ccccCCCcccceEEEcCC-CcEEEEEecCc-eEEeeccc----Ccceeeee-cCCC-eeEEEecCCCCEEEEEcCCCCCC
Q 005140 207 PVYKRSYWTESFVQWSPL-GTYLATVHRQG-AAVWGGAN----TFNRLMRY-AHPQ-VKLIDFSPGEKYLVTYSSHEPSN 278 (712)
Q Consensus 207 ~~~~~~~~~v~~v~~Spd-g~~lat~~~~~-i~iw~~~~----~~~~~~~~-~~~~-v~~i~~Spdg~~l~t~s~d~~~~ 278 (712)
..+.+|..-|+.++..+. -..|++++.|. +++|++.. .+..+.++ .|.. |..+..|+||++.++++.|
T Consensus 9 ~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD---- 84 (315)
T KOG0279|consen 9 GTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD---- 84 (315)
T ss_pred eeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc----
Confidence 467899999999999987 46788889998 77998752 23345555 3554 9999999999999999999
Q ss_pred CcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccccc
Q 005140 279 PRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKS 357 (712)
Q Consensus 279 ~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~ 357 (712)
+++++||+.+|+..+.|.+|...+. +++||+ |...|++++ |++|.+|++..........
T Consensus 85 ------~~lrlWDl~~g~~t~~f~GH~~dVl-------------sva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~ 144 (315)
T KOG0279|consen 85 ------GTLRLWDLATGESTRRFVGHTKDVL-------------SVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHE 144 (315)
T ss_pred ------ceEEEEEecCCcEEEEEEecCCceE-------------EEEecC-CCceeecCCCcceeeeeeecccEEEEEec
Confidence 9999999999999999999998875 799999 999999999 9999999988554332221
Q ss_pred c-cccCeeeEEECCC--CCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccc
Q 005140 358 L-KVENVMDFSWSPT--DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKT 434 (712)
Q Consensus 358 ~-~~~~v~~~~~sp~--~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~ 434 (712)
. +.+-|.++.|+|. ..+|+. ++.|+.+++|..+.
T Consensus 145 ~~~~~WVscvrfsP~~~~p~Ivs-----~s~DktvKvWnl~~-------------------------------------- 181 (315)
T KOG0279|consen 145 DSHREWVSCVRFSPNESNPIIVS-----ASWDKTVKVWNLRN-------------------------------------- 181 (315)
T ss_pred CCCcCcEEEEEEcCCCCCcEEEE-----ccCCceEEEEccCC--------------------------------------
Confidence 2 1445999999998 677777 77787777664321
Q ss_pred cccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC-C
Q 005140 435 KKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG-K 513 (712)
Q Consensus 435 ~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~-~ 513 (712)
... ...+.+|.+.++.+++||||...++++.|+ .+.+||++.+. .+.++.. .
T Consensus 182 ---------------~~l---~~~~~gh~~~v~t~~vSpDGslcasGgkdg---~~~LwdL~~~k------~lysl~a~~ 234 (315)
T KOG0279|consen 182 ---------------CQL---RTTFIGHSGYVNTVTVSPDGSLCASGGKDG---EAMLWDLNEGK------NLYSLEAFD 234 (315)
T ss_pred ---------------cch---hhccccccccEEEEEECCCCCEEecCCCCc---eEEEEEccCCc------eeEeccCCC
Confidence 000 023458899999999999999999999999 99999998765 5667664 4
Q ss_pred ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee------cc-----ccceeeEEECCCCCEEEEEEccceeccc
Q 005140 514 QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT------AE-----HFMATDVEWDPTGRYVATAVTSVHEMEN 582 (712)
Q Consensus 514 ~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~------~~-----~~~v~~~~~spdg~~l~t~s~~~~~~d~ 582 (712)
.|++++|+|+--+|+.+. +..|+|||+.+..++.. +. ...+.+++||+||..|+.+-. |+
T Consensus 235 ~v~sl~fspnrywL~~at----~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~t-----d~ 305 (315)
T KOG0279|consen 235 IVNSLCFSPNRYWLCAAT----ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYT-----DN 305 (315)
T ss_pred eEeeEEecCCceeEeecc----CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeec-----CC
Confidence 789999999987777665 56799999998776653 11 345678999999999999999 99
Q ss_pred cEEEEEec
Q 005140 583 GFNIWSFN 590 (712)
Q Consensus 583 ~v~iw~~~ 590 (712)
.|++|.+.
T Consensus 306 ~irv~qv~ 313 (315)
T KOG0279|consen 306 VIRVWQVA 313 (315)
T ss_pred cEEEEEee
Confidence 99999864
No 17
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.98 E-value=5.6e-30 Score=227.93 Aligned_cols=272 Identities=14% Similarity=0.290 Sum_probs=223.5
Q ss_pred CcEEEEEecCc-eEEeecccCcceeeeecCCC--eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc--eee
Q 005140 225 GTYLATVHRQG-AAVWGGANTFNRLMRYAHPQ--VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK--VMR 299 (712)
Q Consensus 225 g~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~--v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~--~~~ 299 (712)
.-+||+++.|. |++|... ++.+..+++|+. |..+.++||+++||+++.. .|++||+.++. ++.
T Consensus 10 ~viLvsA~YDhTIRfWqa~-tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-----------hvRlyD~~S~np~Pv~ 77 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQAL-TGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-----------HVRLYDLNSNNPNPVA 77 (311)
T ss_pred ceEEEeccCcceeeeeehh-cCeEEEEEecCccceeeEEEcCCcchhhhccCC-----------eeEEEEccCCCCCcee
Confidence 35899999998 8899999 999999998885 9999999999999999877 79999998886 589
Q ss_pred eccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEE
Q 005140 300 DFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLF 378 (712)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~ 378 (712)
+|.+|...++ ++.|.. +|+.+++++ ||+++|||+......... .+...|+++..+|+...|++
T Consensus 78 t~e~h~kNVt-------------aVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis- 141 (311)
T KOG0315|consen 78 TFEGHTKNVT-------------AVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELIS- 141 (311)
T ss_pred EEeccCCceE-------------EEEEee-cCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEe-
Confidence 9999977764 789999 999999999 999999999974443333 34467999999999888887
Q ss_pred eecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEE
Q 005140 379 VPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLE 458 (712)
Q Consensus 379 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 458 (712)
+++.+.|++|++....... .-
T Consensus 142 ------~dqsg~irvWDl~~~~c~~-----------------------------------------------------~l 162 (311)
T KOG0315|consen 142 ------GDQSGNIRVWDLGENSCTH-----------------------------------------------------EL 162 (311)
T ss_pred ------ecCCCcEEEEEccCCcccc-----------------------------------------------------cc
Confidence 7777777777764321100 00
Q ss_pred ecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCC
Q 005140 459 LDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFN 536 (712)
Q Consensus 459 l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~d 536 (712)
++.-...|.+++..|||++++.+...| +.++|++-.......+.++..++.| .+..+.+|||+++|++++. |
T Consensus 163 iPe~~~~i~sl~v~~dgsml~a~nnkG---~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss---d 236 (311)
T KOG0315|consen 163 IPEDDTSIQSLTVMPDGSMLAAANNKG---NCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS---D 236 (311)
T ss_pred CCCCCcceeeEEEcCCCcEEEEecCCc---cEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecC---C
Confidence 111245788899999999999999888 9999999876665566777777755 5788999999999999998 9
Q ss_pred ceEEEEECCcc---eeeeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEec-Ccee
Q 005140 537 GQLEFYNVDEL---ETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLL 594 (712)
Q Consensus 537 g~v~iwd~~~~---~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~ 594 (712)
.+++||+.++. ++..++|..-+.+++||.||+||+|++. |+..++|++. |+.+
T Consensus 237 ktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTass-----d~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 237 KTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASS-----DHTARLWDLSAGKEV 293 (311)
T ss_pred ceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCC-----CCceeecccccCcee
Confidence 99999999976 3334577789999999999999999999 9999999987 4433
No 18
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.98 E-value=5.3e-30 Score=233.43 Aligned_cols=276 Identities=14% Similarity=0.210 Sum_probs=226.4
Q ss_pred eeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEe
Q 005140 247 RLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRW 326 (712)
Q Consensus 247 ~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (712)
++.+.|...|.++.|++|.++|++++.| |.+.|||..|....+.++.+..-+. .++|
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqD----------GklIvWDs~TtnK~haipl~s~WVM-------------tCA~ 105 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQD----------GKLIVWDSFTTNKVHAIPLPSSWVM-------------TCAY 105 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccC----------CeEEEEEcccccceeEEecCceeEE-------------EEEE
Confidence 5555566679999999999999999999 9999999999998888888776553 5899
Q ss_pred cCCCCCEEEEec-CCeEEEEEcCCc--e----ecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc
Q 005140 327 GGGKDKYFAKLG-KNMISVYETESF--T----LIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 399 (712)
Q Consensus 327 s~~dg~~la~~~-d~~i~iwd~~~~--~----~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 399 (712)
+| .|+++|+++ |+...||++.+. . .......|..-+.+..|-+|+. |++ +++|.+..+|.++ +.
T Consensus 106 sP-Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~-ilT-----~SGD~TCalWDie--~g 176 (343)
T KOG0286|consen 106 SP-SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH-ILT-----GSGDMTCALWDIE--TG 176 (343)
T ss_pred CC-CCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc-eEe-----cCCCceEEEEEcc--cc
Confidence 99 999999999 999999999844 1 2222345667788888887554 445 6677666554332 21
Q ss_pred cceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee-CCCEE
Q 005140 400 EELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHRF 478 (712)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l 478 (712)
+ ....+.+|.+.|.+++++| +++.|
T Consensus 177 ~------------------------------------------------------~~~~f~GH~gDV~slsl~p~~~ntF 202 (343)
T KOG0286|consen 177 Q------------------------------------------------------QTQVFHGHTGDVMSLSLSPSDGNTF 202 (343)
T ss_pred e------------------------------------------------------EEEEecCCcccEEEEecCCCCCCeE
Confidence 1 1134568999999999999 99999
Q ss_pred EEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeecc--
Q 005140 479 AVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE-- 554 (712)
Q Consensus 479 ~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~-- 554 (712)
++++.|+ ..++||++.+. ...++.+| .|++++|.|+|.-+++|+. |++.++||++..+.+....
T Consensus 203 vSg~cD~---~aklWD~R~~~------c~qtF~ghesDINsv~ffP~G~afatGSD---D~tcRlyDlRaD~~~a~ys~~ 270 (343)
T KOG0286|consen 203 VSGGCDK---SAKLWDVRSGQ------CVQTFEGHESDINSVRFFPSGDAFATGSD---DATCRLYDLRADQELAVYSHD 270 (343)
T ss_pred Eeccccc---ceeeeeccCcc------eeEeecccccccceEEEccCCCeeeecCC---CceeEEEeecCCcEEeeeccC
Confidence 9999999 89999998875 67788777 6999999999999999998 9999999999877766533
Q ss_pred --ccceeeEEECCCCCEEEEEEccceeccccEEEEEe-cCceeeee--cccceeeeEEecCCCCCCChhhHHHHHH
Q 005140 555 --HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSF-NGKLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEIAK 625 (712)
Q Consensus 555 --~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~-~g~~~~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i~~ 625 (712)
..+|++++||..|++|.+|.. |.++.+||. .++.+... |..+|.++..+|+|..+.|++-|..+|-
T Consensus 271 ~~~~gitSv~FS~SGRlLfagy~-----d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lri 341 (343)
T KOG0286|consen 271 SIICGITSVAFSKSGRLLFAGYD-----DFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRI 341 (343)
T ss_pred cccCCceeEEEcccccEEEeeec-----CCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheee
Confidence 368899999999999999988 999999994 56655443 7899999999999999999999988774
No 19
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=1.3e-29 Score=229.55 Aligned_cols=272 Identities=16% Similarity=0.219 Sum_probs=210.1
Q ss_pred CCCCceEEEEECCeeEEEecCCC----CCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee-c
Q 005140 179 EKARDQFVIRSGTDTEVLWNDAR----HLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-A 252 (712)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~w~~~~----~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~ 252 (712)
+++++.++....|.+++.|.+.. .+.+.+.|++|...|+.+..|+||++.++++.|+ +++||+. +++...+| .
T Consensus 25 ~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~-~g~~t~~f~G 103 (315)
T KOG0279|consen 25 IKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLA-TGESTRRFVG 103 (315)
T ss_pred cCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEec-CCcEEEEEEe
Confidence 44667777778889999998743 3456788999999999999999999999999999 7899999 66766666 3
Q ss_pred CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCC--CcccccCCCCCcCCCCcCeEEecCC
Q 005140 253 HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGS--ADEFAVGGTGGVAGVSWPVFRWGGG 329 (712)
Q Consensus 253 ~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~ 329 (712)
|. .|.+++||||.+.|++|+.| .+|++|++. |.+..++..+ ..-++ +++|+|
T Consensus 104 H~~dVlsva~s~dn~qivSGSrD----------kTiklwnt~-g~ck~t~~~~~~~~WVs-------------cvrfsP- 158 (315)
T KOG0279|consen 104 HTKDVLSVAFSTDNRQIVSGSRD----------KTIKLWNTL-GVCKYTIHEDSHREWVS-------------CVRFSP- 158 (315)
T ss_pred cCCceEEEEecCCCceeecCCCc----------ceeeeeeec-ccEEEEEecCCCcCcEE-------------EEEEcC-
Confidence 44 59999999999999999999 999999974 4444444433 33332 899999
Q ss_pred C--CCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeee
Q 005140 330 K--DKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKN 406 (712)
Q Consensus 330 d--g~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 406 (712)
+ .-+|++++ |+++++||+.+.++......|...++.+++||||..+++ |+.++.+.+ |++...+.
T Consensus 159 ~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcas-----Ggkdg~~~L--wdL~~~k~----- 226 (315)
T KOG0279|consen 159 NESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCAS-----GGKDGEAML--WDLNEGKN----- 226 (315)
T ss_pred CCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEec-----CCCCceEEE--EEccCCce-----
Confidence 7 66899999 999999999999988888888899999999999999998 655555443 33322211
Q ss_pred eeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCC
Q 005140 407 LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSP 486 (712)
Q Consensus 407 ~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~ 486 (712)
+ ..+ +|...|.+++|+|+--.|+.+...
T Consensus 227 -------------------------------------l------------ysl-~a~~~v~sl~fspnrywL~~at~~-- 254 (315)
T KOG0279|consen 227 -------------------------------------L------------YSL-EAFDIVNSLCFSPNRYWLCAATAT-- 254 (315)
T ss_pred -------------------------------------e------------Eec-cCCCeEeeEEecCCceeEeeccCC--
Confidence 1 112 568899999999998877777664
Q ss_pred CCeEEEEEeecccccCceeEEEE---eC--CCceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 487 RPDISFYSMRTAQHAGRVSKLTT---LK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 487 ~~~v~i~d~~~~~~~~~~~~~~~---~~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
.|+|||+.++.....+++-.. .. ...+.+++||+||..|+.+-. |+.|++|.+.
T Consensus 255 --sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~t---d~~irv~qv~ 313 (315)
T KOG0279|consen 255 --SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYT---DNVIRVWQVA 313 (315)
T ss_pred --ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeec---CCcEEEEEee
Confidence 599999987653222211111 11 113577999999999999988 9999999764
No 20
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=1.2e-29 Score=245.30 Aligned_cols=311 Identities=16% Similarity=0.271 Sum_probs=242.4
Q ss_pred CCCCCceEEEEECCeeEEEecCCC-CCC--Cccccc------C----CCcccceEEEcCCCcEEEEEecCc-eEEeeccc
Q 005140 178 DEKARDQFVIRSGTDTEVLWNDAR-HLK--PEPVYK------R----SYWTESFVQWSPLGTYLATVHRQG-AAVWGGAN 243 (712)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~w~~~~-~~~--~~~~~~------~----~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~ 243 (712)
+|-....|+.+.++.+..+|++.. ... ....|. + ....|++++|+.+|++||+|+.+| ++||+..
T Consensus 187 nP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~- 265 (524)
T KOG0273|consen 187 NPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKD- 265 (524)
T ss_pred CchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEecC-
Confidence 333333678888888999999853 111 111121 1 225689999999999999999999 7899998
Q ss_pred Ccceeeee--cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCc
Q 005140 244 TFNRLMRY--AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSW 321 (712)
Q Consensus 244 ~~~~~~~~--~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (712)
+.++.++ |...|.++.|+.+|.||++++.| +++.+||..+|.....|..|.....
T Consensus 266 -G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD----------~ttilwd~~~g~~~q~f~~~s~~~l------------ 322 (524)
T KOG0273|consen 266 -GNLISTLGQHKGPIFSLKWNKKGTYILSGGVD----------GTTILWDAHTGTVKQQFEFHSAPAL------------ 322 (524)
T ss_pred -chhhhhhhccCCceEEEEEcCCCCEEEeccCC----------ccEEEEeccCceEEEeeeeccCCcc------------
Confidence 3444444 44459999999999999999999 9999999999999998888876621
Q ss_pred CeEEecCCCCCEEEEecCCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccc
Q 005140 322 PVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE 401 (712)
Q Consensus 322 ~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~ 401 (712)
.+.|-. +..+..+..|+.|+||.+....++.++..|...|.++.|.|.|..|++ ++.|++.+||...- ...
T Consensus 323 -DVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS-----~SdD~TlkiWs~~~--~~~ 393 (524)
T KOG0273|consen 323 -DVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLAS-----CSDDGTLKIWSMGQ--SNS 393 (524)
T ss_pred -ceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEE-----ecCCCeeEeeecCC--Ccc
Confidence 478876 655554445999999999887888777789999999999999999999 88999988876432 222
Q ss_pred eeeeeeeeecceeEEECcCCC---------EEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEe
Q 005140 402 LRQKNLFSVSDCKMYWQSSGD---------YLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWE 472 (712)
Q Consensus 402 ~~~~~~~~~~~~~~~~s~~g~---------~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~s 472 (712)
......|...+..+.|+|.|. .++.++.+.+ +.+|++.. ......+..|..+|.+++||
T Consensus 394 ~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst---------V~lwdv~~---gv~i~~f~kH~~pVysvafS 461 (524)
T KOG0273|consen 394 VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST---------VKLWDVES---GVPIHTLMKHQEPVYSVAFS 461 (524)
T ss_pred hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCe---------EEEEEccC---CceeEeeccCCCceEEEEec
Confidence 222333455566778888764 5677777766 78898864 23345677899999999999
Q ss_pred eCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC-ceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 473 PKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK-QANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 473 p~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
|+|+++|+|+.|+ .|.||+.+++. .++...+. .|..++|+.+|.+|..+.. ++.+++.|++
T Consensus 462 ~~g~ylAsGs~dg---~V~iws~~~~~------l~~s~~~~~~Ifel~Wn~~G~kl~~~~s---d~~vcvldlr 523 (524)
T KOG0273|consen 462 PNGRYLASGSLDG---CVHIWSTKTGK------LVKSYQGTGGIFELCWNAAGDKLGACAS---DGSVCVLDLR 523 (524)
T ss_pred CCCcEEEecCCCC---eeEeccccchh------eeEeecCCCeEEEEEEcCCCCEEEEEec---CCCceEEEec
Confidence 9999999999999 99999998765 67776644 6899999999999988887 9999998875
No 21
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=5.6e-30 Score=260.64 Aligned_cols=391 Identities=14% Similarity=0.145 Sum_probs=293.7
Q ss_pred hccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcE--EEEEecCc-eEEeecccCcceeeee
Q 005140 175 WLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTY--LATVHRQG-AAVWGGANTFNRLMRY 251 (712)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~--lat~~~~~-i~iw~~~~~~~~~~~~ 251 (712)
+.++|-+ ..++.+..++.+.+|++ ........|++|.+.|.++.|.|+-.+ |++|..|+ +++||+......+..+
T Consensus 111 ma~~~~g-~LlAtggaD~~v~VWdi-~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~ 188 (775)
T KOG0319|consen 111 MAFDPTG-TLLATGGADGRVKVWDI-KNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTM 188 (775)
T ss_pred EEEcCCC-ceEEeccccceEEEEEe-eCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHH
Confidence 4556656 66677777899999999 677788899999999999999998765 88888898 8899998333323333
Q ss_pred --cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCC
Q 005140 252 --AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGG 329 (712)
Q Consensus 252 --~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 329 (712)
|...|++++|++|+.-+++++.| ..+.|||+.+.+.+++++.....- .+.+-+
T Consensus 189 ~~H~S~vtsL~~~~d~~~~ls~~RD----------kvi~vwd~~~~~~l~~lp~ye~~E--------------~vv~l~- 243 (775)
T KOG0319|consen 189 ILHKSAVTSLAFSEDSLELLSVGRD----------KVIIVWDLVQYKKLKTLPLYESLE--------------SVVRLR- 243 (775)
T ss_pred HhhhhheeeeeeccCCceEEEeccC----------cEEEEeehhhhhhhheechhhhee--------------eEEEec-
Confidence 45569999999999999999999 899999998877777765543322 344444
Q ss_pred C-----CCEEEEec-CCeEEEEEcCCceeccccccc-ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccce
Q 005140 330 K-----DKYFAKLG-KNMISVYETESFTLIDKKSLK-VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEEL 402 (712)
Q Consensus 330 d-----g~~la~~~-d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~ 402 (712)
+ +.++.+.+ +|.+++|+..+++.+.+.... .+.+..+...+..+.++..+ .++ .+.+|+..+.+..
T Consensus 244 ~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vt-----aeQ--nl~l~d~~~l~i~ 316 (775)
T KOG0319|consen 244 EELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVT-----AEQ--NLFLYDEDELTIV 316 (775)
T ss_pred hhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEE-----ccc--eEEEEEccccEEe
Confidence 4 56888888 999999999998877554333 33355555545444444422 333 4566677776666
Q ss_pred eeeeeeeecceeE-EECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEE
Q 005140 403 RQKNLFSVSDCKM-YWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVI 481 (712)
Q Consensus 403 ~~~~~~~~~~~~~-~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~ 481 (712)
++.-.++..+..| .|.|..++|+++++... +++|.+...... -+++|...|.++....+|.+|+++
T Consensus 317 k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~---------lr~y~~~~~~c~----ii~GH~e~vlSL~~~~~g~llat~ 383 (775)
T KOG0319|consen 317 KQIVGYNDEILDMKFLGPEESHLAVATNSPE---------LRLYTLPTSYCQ----IIPGHTEAVLSLDVWSSGDLLATG 383 (775)
T ss_pred hhhcCCchhheeeeecCCccceEEEEeCCCc---------eEEEecCCCceE----EEeCchhheeeeeecccCcEEEEe
Confidence 6665566666666 57899999999998766 788866544332 467999999999966688999999
Q ss_pred EcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCC-CeEEEEeccCCCceEEEEECCc-------cee--
Q 005140 482 HGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSG-RFIVLAGLKGFNGQLEFYNVDE-------LET-- 549 (712)
Q Consensus 482 ~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg-~~l~~~~~~~~dg~v~iwd~~~-------~~~-- 549 (712)
+.|. ++++|.++.+... ...+.... .+.+.+++++..| .++++++. |+++++|++.. ...
T Consensus 384 sKD~---svilWr~~~~~~~--~~~~a~~~gH~~svgava~~~~~asffvsvS~---D~tlK~W~l~~s~~~~~~~~~~~ 455 (775)
T KOG0319|consen 384 SKDK---SVILWRLNNNCSK--SLCVAQANGHTNSVGAVAGSKLGASFFVSVSQ---DCTLKLWDLPKSKETAFPIVLTC 455 (775)
T ss_pred cCCc---eEEEEEecCCcch--hhhhhhhcccccccceeeecccCccEEEEecC---CceEEEecCCCcccccccceehh
Confidence 9999 9999999443321 11222233 3468889997765 47778887 99999999985 111
Q ss_pred --eeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEec-Cceeeee--cccceeeeEEecCCCCCCChhhHHHHH
Q 005140 550 --MATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 550 --~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
....|...|++++.+|+.+.|||||. |.+.+||++. +.++... |...++++.|+|..+.++|+|.|++||
T Consensus 456 ~~t~~aHdKdIN~Vaia~ndkLiAT~Sq-----DktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvK 530 (775)
T KOG0319|consen 456 RYTERAHDKDINCVAIAPNDKLIATGSQ-----DKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVK 530 (775)
T ss_pred hHHHHhhcccccceEecCCCceEEeccc-----ccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEE
Confidence 12368899999999999999999999 9999999997 3343333 778999999999999999999999886
Q ss_pred H
Q 005140 625 K 625 (712)
Q Consensus 625 ~ 625 (712)
-
T Consensus 531 I 531 (775)
T KOG0319|consen 531 I 531 (775)
T ss_pred E
Confidence 3
No 22
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=3.7e-29 Score=254.71 Aligned_cols=329 Identities=12% Similarity=0.220 Sum_probs=250.3
Q ss_pred hhccCCCCCceEEEEECCeeEEEecCCCCCCC--------cccccCCCcccceEEEcCCCcEEEEEecCceEEeecccCc
Q 005140 174 KWLTDEKARDQFVIRSGTDTEVLWNDARHLKP--------EPVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWGGANTF 245 (712)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~--------~~~~~~~~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~ 245 (712)
+|..++... .-++...+.++-++.++...++ ...+.+|+..|+++++|.+...+++++++.++||+.. +.
T Consensus 327 dv~~~~~~~-~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~-t~ 404 (888)
T KOG0306|consen 327 DVTPSGGTE-NTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRD-TL 404 (888)
T ss_pred EEEecCCcc-eeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEcc-Cc
Confidence 566666666 3333444555545544332221 1356899999999999999999999999999999999 99
Q ss_pred ceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEE
Q 005140 246 NRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFR 325 (712)
Q Consensus 246 ~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (712)
+.+.++....+.+..|-|.++++++|... |.+.+||+.+...+.+++.|.+.+ |+ ++
T Consensus 405 kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~----------Gel~vfdlaS~~l~Eti~AHdgaI------------Ws-i~ 461 (888)
T KOG0306|consen 405 KCIRTITCGYILASKFVPGDRYIVLGTKN----------GELQVFDLASASLVETIRAHDGAI------------WS-IS 461 (888)
T ss_pred ceeEEeccccEEEEEecCCCceEEEeccC----------CceEEEEeehhhhhhhhhccccce------------ee-ee
Confidence 99999998899999999999999999999 999999999999999999998887 86 99
Q ss_pred ecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceee
Q 005140 326 WGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ 404 (712)
Q Consensus 326 ~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (712)
.+| |++.+++++ |++|++|+..-....... . .+.|..- .... ++
T Consensus 462 ~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt---~-----------~k~lsl~------~~rt-----Le--------- 506 (888)
T KOG0306|consen 462 LSP-DNKGFVTGSADKTVKFWDFKLVVSVPGT---Q-----------KKVLSLK------HTRT-----LE--------- 506 (888)
T ss_pred ecC-CCCceEEecCCcEEEEEeEEEEeccCcc---c-----------ceeeeec------cceE-----Ee---------
Confidence 999 999999999 999999996521110000 0 0000000 0000 00
Q ss_pred eeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcC
Q 005140 405 KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGD 484 (712)
Q Consensus 405 ~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d 484 (712)
......++.+||||++||++.-+++ +.+|.++.-. -.+.+.||.-||.|+..|||++.+++++.|
T Consensus 507 ---l~ddvL~v~~Spdgk~LaVsLLdnT---------VkVyflDtlK---FflsLYGHkLPV~smDIS~DSklivTgSAD 571 (888)
T KOG0306|consen 507 ---LEDDVLCVSVSPDGKLLAVSLLDNT---------VKVYFLDTLK---FFLSLYGHKLPVLSMDISPDSKLIVTGSAD 571 (888)
T ss_pred ---ccccEEEEEEcCCCcEEEEEeccCe---------EEEEEeccee---eeeeecccccceeEEeccCCcCeEEeccCC
Confidence 1112223344555555555555554 4555554321 125677999999999999999999999999
Q ss_pred CCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceee
Q 005140 485 SPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATD 560 (712)
Q Consensus 485 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~ 560 (712)
. +|++|-++-|. ..+++..| .|.++.|-|+...+++++. |+.|+-||-...+.+.+ +|+..|.+
T Consensus 572 K---nVKiWGLdFGD------CHKS~fAHdDSvm~V~F~P~~~~FFt~gK---D~kvKqWDg~kFe~iq~L~~H~~ev~c 639 (888)
T KOG0306|consen 572 K---NVKIWGLDFGD------CHKSFFAHDDSVMSVQFLPKTHLFFTCGK---DGKVKQWDGEKFEEIQKLDGHHSEVWC 639 (888)
T ss_pred C---ceEEeccccch------hhhhhhcccCceeEEEEcccceeEEEecC---cceEEeechhhhhhheeeccchheeee
Confidence 9 99999997665 45566554 7899999999999999998 99999999998888776 78899999
Q ss_pred EEECCCCCEEEEEEccceeccccEEEEEecCcee
Q 005140 561 VEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLL 594 (712)
Q Consensus 561 ~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~ 594 (712)
++.+|+|.|+++++. |.+|++|.-....+
T Consensus 640 Lav~~~G~~vvs~sh-----D~sIRlwE~tde~~ 668 (888)
T KOG0306|consen 640 LAVSPNGSFVVSSSH-----DKSIRLWERTDEIL 668 (888)
T ss_pred eEEcCCCCeEEeccC-----CceeEeeeccCcce
Confidence 999999999999999 99999999775443
No 23
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.1e-30 Score=244.27 Aligned_cols=286 Identities=16% Similarity=0.260 Sum_probs=211.1
Q ss_pred CCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccC--cceeeee--cCCCeeEEEecCCCCEEEEEcCCCCC
Q 005140 203 LKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANT--FNRLMRY--AHPQVKLIDFSPGEKYLVTYSSHEPS 277 (712)
Q Consensus 203 ~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~--~~~~~~~--~~~~v~~i~~Spdg~~l~t~s~d~~~ 277 (712)
.+....++.|...|..++||++|+|||+++.+. ..||.+... .+...++ ++..|..+.||||.+||++++.+
T Consensus 214 ~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~--- 290 (519)
T KOG0293|consen 214 SQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFD--- 290 (519)
T ss_pred chhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCch---
Confidence 345556789999999999999999999999999 558876522 2334443 45569999999999999999999
Q ss_pred CCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccc
Q 005140 278 NPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKK 356 (712)
Q Consensus 278 ~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~ 356 (712)
..+++||+.+|.+.+.+....+.. -.+++|.| ||..+++|+ |+++..|+++....-.-.
T Consensus 291 -------e~~~lwDv~tgd~~~~y~~~~~~S------------~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~~~W~ 350 (519)
T KOG0293|consen 291 -------EVLSLWDVDTGDLRHLYPSGLGFS------------VSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNILGNWE 350 (519)
T ss_pred -------HheeeccCCcchhhhhcccCcCCC------------cceeEEcc-CCceeEecCCCCcEEEecCCcchhhccc
Confidence 789999999999988876652211 11789999 999999999 999999999843221111
Q ss_pred cccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccc
Q 005140 357 SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKK 436 (712)
Q Consensus 357 ~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~ 436 (712)
-...+.|.+++.++||++++.. ..|.. |.+|+......
T Consensus 351 gvr~~~v~dlait~Dgk~vl~v-----~~d~~--i~l~~~e~~~d----------------------------------- 388 (519)
T KOG0293|consen 351 GVRDPKVHDLAITYDGKYVLLV-----TVDKK--IRLYNREARVD----------------------------------- 388 (519)
T ss_pred ccccceeEEEEEcCCCcEEEEE-----ecccc--eeeechhhhhh-----------------------------------
Confidence 2344568899999999988872 22222 22222111000
Q ss_pred cccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCc--
Q 005140 437 STYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQ-- 514 (712)
Q Consensus 437 ~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~-- 514 (712)
...++. ..+|++++.|.+|+++++.-.+. .+++||+.... .+..+.++.
T Consensus 389 -----------------r~lise---~~~its~~iS~d~k~~LvnL~~q---ei~LWDl~e~~------lv~kY~Ghkq~ 439 (519)
T KOG0293|consen 389 -----------------RGLISE---EQPITSFSISKDGKLALVNLQDQ---EIHLWDLEENK------LVRKYFGHKQG 439 (519)
T ss_pred -----------------hccccc---cCceeEEEEcCCCcEEEEEcccC---eeEEeecchhh------HHHHhhccccc
Confidence 001122 67899999999999999988888 89999997432 344444442
Q ss_pred --eeEEEEc-cCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCC-EEEEEEccceeccccEEEEE
Q 005140 515 --ANALFWS-PSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGR-YVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 515 --v~~l~~s-pdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~-~l~t~s~~~~~~d~~v~iw~ 588 (712)
+-.-+|- -+..++++|+. |+.|+||+..+++++.. +|...|++++|+|... .+|+++. ||+|+||.
T Consensus 440 ~fiIrSCFgg~~~~fiaSGSE---D~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasD-----DgtIRIWg 511 (519)
T KOG0293|consen 440 HFIIRSCFGGGNDKFIASGSE---DSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASD-----DGTIRIWG 511 (519)
T ss_pred ceEEEeccCCCCcceEEecCC---CceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCC-----CCeEEEec
Confidence 2222232 35578999998 99999999999999875 8889999999999665 6788888 99999997
Q ss_pred ec
Q 005140 589 FN 590 (712)
Q Consensus 589 ~~ 590 (712)
..
T Consensus 512 ~~ 513 (519)
T KOG0293|consen 512 PS 513 (519)
T ss_pred CC
Confidence 65
No 24
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=2.5e-28 Score=220.38 Aligned_cols=283 Identities=18% Similarity=0.370 Sum_probs=222.4
Q ss_pred CcccccCCCcccceEEEcCC-CcEEEEEecCc-eEEeeccc--Ccceeeee---cCCCeeEEEecCCCCEEEEEcCCCCC
Q 005140 205 PEPVYKRSYWTESFVQWSPL-GTYLATVHRQG-AAVWGGAN--TFNRLMRY---AHPQVKLIDFSPGEKYLVTYSSHEPS 277 (712)
Q Consensus 205 ~~~~~~~~~~~v~~v~~Spd-g~~lat~~~~~-i~iw~~~~--~~~~~~~~---~~~~v~~i~~Spdg~~l~t~s~d~~~ 277 (712)
.+..+++|...+..++|+|- |..||+++.+. |+||+... +......+ |...|++++|||.|+||++++.|
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD--- 82 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD--- 82 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeecc---
Confidence 34567899999999999998 99999999999 89999872 12222222 33459999999999999999999
Q ss_pred CCcCCCccEEEEEEccCC--ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCc---e
Q 005140 278 NPRDANRVVINIFDVRTG--KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESF---T 351 (712)
Q Consensus 278 ~~~~~~~~~I~iwd~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~---~ 351 (712)
.++.||.-..+ +++.++.+|...+. +++||+ +|.|||+++ |++|-||.+... .
T Consensus 83 -------~t~~Iw~k~~~efecv~~lEGHEnEVK-------------~Vaws~-sG~~LATCSRDKSVWiWe~deddEfe 141 (312)
T KOG0645|consen 83 -------ATVVIWKKEDGEFECVATLEGHENEVK-------------CVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFE 141 (312)
T ss_pred -------ceEEEeecCCCceeEEeeeecccccee-------------EEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEE
Confidence 99999985444 57889999988874 899999 999999999 999999998743 3
Q ss_pred ecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccc
Q 005140 352 LIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRY 431 (712)
Q Consensus 352 ~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~ 431 (712)
.+..+..|...|..+.|+|....|++ ++.|+++++|.-. +++.+.++
T Consensus 142 c~aVL~~HtqDVK~V~WHPt~dlL~S-----~SYDnTIk~~~~~-----------------------~dddW~c~----- 188 (312)
T KOG0645|consen 142 CIAVLQEHTQDVKHVIWHPTEDLLFS-----CSYDNTIKVYRDE-----------------------DDDDWECV----- 188 (312)
T ss_pred EEeeeccccccccEEEEcCCcceeEE-----eccCCeEEEEeec-----------------------CCCCeeEE-----
Confidence 45555678888999999998888888 7788887766432 13333322
Q ss_pred ccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC
Q 005140 432 TKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK 511 (712)
Q Consensus 432 ~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~ 511 (712)
.++.+|...|.+++|+|.|.+|++++.|+ +|+||...+ .+..+.
T Consensus 189 -------------------------~tl~g~~~TVW~~~F~~~G~rl~s~sdD~---tv~Iw~~~~--------~~~~~~ 232 (312)
T KOG0645|consen 189 -------------------------QTLDGHENTVWSLAFDNIGSRLVSCSDDG---TVSIWRLYT--------DLSGMH 232 (312)
T ss_pred -------------------------EEecCccceEEEEEecCCCceEEEecCCc---ceEeeeecc--------Ccchhc
Confidence 34557888999999999999999999999 999998642 233344
Q ss_pred CCceeEEEEccCCCeEEEEeccCCCceEEEEECCc------ceeee---eccccceeeEEECCC-CCEEEEEEccceecc
Q 005140 512 GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE------LETMA---TAEHFMATDVEWDPT-GRYVATAVTSVHEME 581 (712)
Q Consensus 512 ~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~------~~~~~---~~~~~~v~~~~~spd-g~~l~t~s~~~~~~d 581 (712)
..++..+.|. ...|++++. |+.|++|.-.. .+++. ..|...|++++|+|. ...|++++. |
T Consensus 233 sr~~Y~v~W~--~~~IaS~gg---D~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~D-----D 302 (312)
T KOG0645|consen 233 SRALYDVPWD--NGVIASGGG---DDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGD-----D 302 (312)
T ss_pred ccceEeeeec--ccceEeccC---CCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCC-----C
Confidence 4578889998 447888887 99999997653 22222 256678999999996 567888888 9
Q ss_pred ccEEEEEec
Q 005140 582 NGFNIWSFN 590 (712)
Q Consensus 582 ~~v~iw~~~ 590 (712)
|.+++|.+.
T Consensus 303 G~v~~W~l~ 311 (312)
T KOG0645|consen 303 GIVNFWELE 311 (312)
T ss_pred ceEEEEEec
Confidence 999999874
No 25
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=2e-28 Score=218.08 Aligned_cols=287 Identities=13% Similarity=0.172 Sum_probs=221.8
Q ss_pred EEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCceEEeecccCcc-eeeeec-C-CCeeEEEe
Q 005140 185 FVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWGGANTFN-RLMRYA-H-PQVKLIDF 261 (712)
Q Consensus 185 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~-~~~~~~-~-~~v~~i~~ 261 (712)
++..+-|.++.+|.. ..+.+...++.....|+.+..+||+++||.++...|++||+.++.. ++.+|. | .+|..+.|
T Consensus 13 LvsA~YDhTIRfWqa-~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF 91 (311)
T KOG0315|consen 13 LVSAGYDHTIRFWQA-LTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGF 91 (311)
T ss_pred EEeccCcceeeeeeh-hcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEE
Confidence 344445788889998 7899999999999999999999999999999999999999983333 567763 4 56999999
Q ss_pred cCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CC
Q 005140 262 SPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KN 340 (712)
Q Consensus 262 Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~ 340 (712)
.-+|+.++||+.| |+++|||++.-.+.+.|... ..+. ++...| +..-|+++. +|
T Consensus 92 ~~dgrWMyTgseD----------gt~kIWdlR~~~~qR~~~~~-spVn-------------~vvlhp-nQteLis~dqsg 146 (311)
T KOG0315|consen 92 QCDGRWMYTGSED----------GTVKIWDLRSLSCQRNYQHN-SPVN-------------TVVLHP-NQTELISGDQSG 146 (311)
T ss_pred eecCeEEEecCCC----------ceEEEEeccCcccchhccCC-CCcc-------------eEEecC-CcceEEeecCCC
Confidence 9999999999999 99999999987777766655 3332 688899 877888888 99
Q ss_pred eEEEEEcCCceeccccc-ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECc
Q 005140 341 MISVYETESFTLIDKKS-LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS 419 (712)
Q Consensus 341 ~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 419 (712)
.|++||+.......... -....|+++...|||..|+. .+..++.+.|++........
T Consensus 147 ~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a-------~nnkG~cyvW~l~~~~~~s~--------------- 204 (311)
T KOG0315|consen 147 NIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAA-------ANNKGNCYVWRLLNHQTASE--------------- 204 (311)
T ss_pred cEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEE-------ecCCccEEEEEccCCCcccc---------------
Confidence 99999998653322221 12235889999999999887 45555566665533110000
Q ss_pred CCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeeccc
Q 005140 420 SGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQ 499 (712)
Q Consensus 420 ~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~ 499 (712)
+ .| ...++.|++.+....+||++++||+++.|. +++||+.++.
T Consensus 205 ------------------------l-------~P--~~k~~ah~~~il~C~lSPd~k~lat~ssdk---tv~iwn~~~~- 247 (311)
T KOG0315|consen 205 ------------------------L-------EP--VHKFQAHNGHILRCLLSPDVKYLATCSSDK---TVKIWNTDDF- 247 (311)
T ss_pred ------------------------c-------eE--hhheecccceEEEEEECCCCcEEEeecCCc---eEEEEecCCc-
Confidence 0 11 123567899999999999999999999999 9999999654
Q ss_pred ccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEE
Q 005140 500 HAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEW 563 (712)
Q Consensus 500 ~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~ 563 (712)
++.-..+.+| .+...+||.||+||++|+. |+.+++|++..++.+.. +|+....+++.
T Consensus 248 ----~kle~~l~gh~rWvWdc~FS~dg~YlvTass---d~~~rlW~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 248 ----FKLELVLTGHQRWVWDCAFSADGEYLVTASS---DHTARLWDLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred ----eeeEEEeecCCceEEeeeeccCccEEEecCC---CCceeecccccCceeeecCCcccccEEEEe
Confidence 2244555555 6899999999999999998 99999999999987664 66666666554
No 26
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=1.8e-28 Score=230.25 Aligned_cols=316 Identities=14% Similarity=0.136 Sum_probs=239.6
Q ss_pred CCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee--cCCCee
Q 005140 181 ARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY--AHPQVK 257 (712)
Q Consensus 181 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~--~~~~v~ 257 (712)
.....+.+++|....+|.. ..+.....+++|..+|+|+.||.||+|||||..+| +.||... ++.....+ ....+.
T Consensus 75 ~~~l~aTGGgDD~AflW~~-~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s-tg~~~~~~~~e~~die 152 (399)
T KOG0296|consen 75 NNNLVATGGGDDLAFLWDI-STGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS-TGGEQWKLDQEVEDIE 152 (399)
T ss_pred CCceEEecCCCceEEEEEc-cCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc-cCceEEEeecccCceE
Confidence 3345677778899999999 56667778999999999999999999999999999 8899999 66655555 455699
Q ss_pred EEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEe
Q 005140 258 LIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKL 337 (712)
Q Consensus 258 ~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~ 337 (712)
-+.|+|-+..|+.|+.| |.|++|.+.++...+.+.+|....+ +=.|.| +|+.++++
T Consensus 153 Wl~WHp~a~illAG~~D----------GsvWmw~ip~~~~~kv~~Gh~~~ct-------------~G~f~p-dGKr~~tg 208 (399)
T KOG0296|consen 153 WLKWHPRAHILLAGSTD----------GSVWMWQIPSQALCKVMSGHNSPCT-------------CGEFIP-DGKRILTG 208 (399)
T ss_pred EEEecccccEEEeecCC----------CcEEEEECCCcceeeEecCCCCCcc-------------cccccC-CCceEEEE
Confidence 99999999999999999 9999999999888999999987764 568999 99999999
Q ss_pred c-CCeEEEEEcCCceeccccccc-ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeE
Q 005140 338 G-KNMISVYETESFTLIDKKSLK-VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKM 415 (712)
Q Consensus 338 ~-d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 415 (712)
. |++|++|+..++.++.+.... .....++.++..+..+.. ++.++.+.+ ....+.+.+...
T Consensus 209 y~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~-----g~~e~~~~~--~~~~sgKVv~~~---------- 271 (399)
T KOG0296|consen 209 YDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTK-----GNSEGVACG--VNNGSGKVVNCN---------- 271 (399)
T ss_pred ecCceEEEEecCCCceeEEecccccCcCCccccccccceeEe-----ccCCccEEE--EccccceEEEec----------
Confidence 9 999999999999877554321 123567777777777776 444444432 222111111000
Q ss_pred EECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEe
Q 005140 416 YWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSM 495 (712)
Q Consensus 416 ~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~ 495 (712)
++. .+............|.++.|+..-...|+++-|| +|.|||+
T Consensus 272 --n~~-------------------------------~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG---~i~iyD~ 315 (399)
T KOG0296|consen 272 --NGT-------------------------------VPELKPSQEELDESVESIPSSSKLPLAACGSVDG---TIAIYDL 315 (399)
T ss_pred --CCC-------------------------------Cccccccchhhhhhhhhcccccccchhhcccccc---eEEEEec
Confidence 000 0100001101123455556666677889999999 9999999
Q ss_pred ecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEE
Q 005140 496 RTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVAT 572 (712)
Q Consensus 496 ~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t 572 (712)
..... -+.+. ..+|..+.|-+ ..+|++++. +|.|+.||.++|+++.+ +|...|.+++.+|++++++|
T Consensus 316 a~~~~------R~~c~he~~V~~l~w~~-t~~l~t~c~---~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT 385 (399)
T KOG0296|consen 316 AASTL------RHICEHEDGVTKLKWLN-TDYLLTACA---NGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVT 385 (399)
T ss_pred ccchh------heeccCCCceEEEEEcC-cchheeecc---CceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEE
Confidence 65432 22222 33689999999 789999998 99999999999998875 78899999999999999999
Q ss_pred EEccceeccccEEEEEec
Q 005140 573 AVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 573 ~s~~~~~~d~~v~iw~~~ 590 (712)
++. |+..+||...
T Consensus 386 ~s~-----D~~a~VF~v~ 398 (399)
T KOG0296|consen 386 VSD-----DNTALVFEVP 398 (399)
T ss_pred ecC-----CCeEEEEecC
Confidence 999 9999998753
No 27
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=4.1e-28 Score=222.11 Aligned_cols=288 Identities=12% Similarity=0.163 Sum_probs=220.7
Q ss_pred CCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceee--eecCCCeeEEEecCCCCEEEEEcCCCCCCC
Q 005140 203 LKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLM--RYAHPQVKLIDFSPGEKYLVTYSSHEPSNP 279 (712)
Q Consensus 203 ~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~--~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~ 279 (712)
..++..+.+|...|+.+.|+|+|.+||||+.|. |.+|+..+..+-.. +.|...|..+.|.+|+..|++++.|
T Consensus 37 ~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtD----- 111 (338)
T KOG0265|consen 37 QAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTD----- 111 (338)
T ss_pred cchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCC-----
Confidence 346667899999999999999999999999998 88999764444333 3344459999999999999999999
Q ss_pred cCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC-CEEEEec-CCeEEEEEcCCceeccccc
Q 005140 280 RDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD-KYFAKLG-KNMISVYETESFTLIDKKS 357 (712)
Q Consensus 280 ~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg-~~la~~~-d~~i~iwd~~~~~~~~~~~ 357 (712)
.+|+.||+++|+.++.+++|...+. ++.-+. -| .++.+++ |+++++||+.+...+....
T Consensus 112 -----k~v~~wD~~tG~~~rk~k~h~~~vN-------------s~~p~r-rg~~lv~SgsdD~t~kl~D~R~k~~~~t~~ 172 (338)
T KOG0265|consen 112 -----KTVRGWDAETGKRIRKHKGHTSFVN-------------SLDPSR-RGPQLVCSGSDDGTLKLWDIRKKEAIKTFE 172 (338)
T ss_pred -----ceEEEEecccceeeehhccccceee-------------ecCccc-cCCeEEEecCCCceEEEEeecccchhhccc
Confidence 9999999999999999999987653 232222 33 4556666 9999999999766554331
Q ss_pred ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccc
Q 005140 358 LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKS 437 (712)
Q Consensus 358 ~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~ 437 (712)
- .-.++++.|..++..+.+ |+-|+.+++|
T Consensus 173 ~-kyqltAv~f~d~s~qv~s-----ggIdn~ikvW--------------------------------------------- 201 (338)
T KOG0265|consen 173 N-KYQLTAVGFKDTSDQVIS-----GGIDNDIKVW--------------------------------------------- 201 (338)
T ss_pred c-ceeEEEEEecccccceee-----ccccCceeee---------------------------------------------
Confidence 1 223777778777766666 5555555543
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC----
Q 005140 438 TYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK---- 513 (712)
Q Consensus 438 ~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~---- 513 (712)
+++.... ...+.+|.++|+.+..+|+|.++.+-+.|. ++++||++--....++..+..-..|
T Consensus 202 --------d~r~~d~---~~~lsGh~DtIt~lsls~~gs~llsnsMd~---tvrvwd~rp~~p~~R~v~if~g~~hnfek 267 (338)
T KOG0265|consen 202 --------DLRKNDG---LYTLSGHADTITGLSLSRYGSFLLSNSMDN---TVRVWDVRPFAPSQRCVKIFQGHIHNFEK 267 (338)
T ss_pred --------ccccCcc---eEEeecccCceeeEEeccCCCccccccccc---eEEEEEecccCCCCceEEEeecchhhhhh
Confidence 3332211 134668999999999999999999999998 9999999764443343333332222
Q ss_pred ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEE
Q 005140 514 QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIW 587 (712)
Q Consensus 514 ~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw 587 (712)
.....+|||+++++.+++. |..+++||......+.. +|.+.|++++|+|.-.+|.+++. |.++++=
T Consensus 268 nlL~cswsp~~~~i~ags~---dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~s-----dk~i~lg 335 (338)
T KOG0265|consen 268 NLLKCSWSPNGTKITAGSA---DRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSS-----DKTIYLG 335 (338)
T ss_pred hcceeeccCCCCccccccc---cceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEecc-----CceeEee
Confidence 2356899999999999998 99999999998777765 78899999999999999999999 8888763
No 28
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=1.2e-29 Score=246.40 Aligned_cols=287 Identities=18% Similarity=0.295 Sum_probs=233.8
Q ss_pred CCCcccccCCCcccceEEEcC-CCcEEEEEecCc-eEEeecccCcceeeeec-CC-CeeEEEecCCCCEEEEEcCCCCCC
Q 005140 203 LKPEPVYKRSYWTESFVQWSP-LGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSN 278 (712)
Q Consensus 203 ~~~~~~~~~~~~~v~~v~~Sp-dg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~~Spdg~~l~t~s~d~~~~ 278 (712)
.+.+..+.+|+..|+++.|.| .|.+|++++.|+ |+||++-....++.+|. |. .|.+++||++|..+++++.|
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD---- 279 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFD---- 279 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecc----
Confidence 455667899999999999999 999999999999 88999985677888873 44 49999999999999999999
Q ss_pred CcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC-CEEEEec-CCeEEEEEcCCceecccc
Q 005140 279 PRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD-KYFAKLG-KNMISVYETESFTLIDKK 356 (712)
Q Consensus 279 ~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg-~~la~~~-d~~i~iwd~~~~~~~~~~ 356 (712)
+.|++||++||+++..|....... ++.|.| |+ +.|.+|+ |+.|+.||+.+++++...
T Consensus 280 ------~~lKlwDtETG~~~~~f~~~~~~~--------------cvkf~p-d~~n~fl~G~sd~ki~~wDiRs~kvvqeY 338 (503)
T KOG0282|consen 280 ------RFLKLWDTETGQVLSRFHLDKVPT--------------CVKFHP-DNQNIFLVGGSDKKIRQWDIRSGKVVQEY 338 (503)
T ss_pred ------eeeeeeccccceEEEEEecCCCce--------------eeecCC-CCCcEEEEecCCCcEEEEeccchHHHHHH
Confidence 999999999999999998776554 799999 88 5666666 999999999999999888
Q ss_pred cccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccc
Q 005140 357 SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKK 436 (712)
Q Consensus 357 ~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~ 436 (712)
..|.+.|..+.|-++|+.+++ .+.+..++||.|.++.......
T Consensus 339 d~hLg~i~~i~F~~~g~rFis-----sSDdks~riWe~~~~v~ik~i~-------------------------------- 381 (503)
T KOG0282|consen 339 DRHLGAILDITFVDEGRRFIS-----SSDDKSVRIWENRIPVPIKNIA-------------------------------- 381 (503)
T ss_pred HhhhhheeeeEEccCCceEee-----eccCccEEEEEcCCCccchhhc--------------------------------
Confidence 889999999999999999998 7788999988887653210000
Q ss_pred cccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCc--
Q 005140 437 STYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQ-- 514 (712)
Q Consensus 437 ~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~-- 514 (712)
. .+.-...++..+|++++++.-+.+. .|.+|.+... .+...-+.+.+|.
T Consensus 382 ---------------------~--~~~hsmP~~~~~P~~~~~~aQs~dN---~i~ifs~~~~---~r~nkkK~feGh~va 432 (503)
T KOG0282|consen 382 ---------------------D--PEMHTMPCLTLHPNGKWFAAQSMDN---YIAIFSTVPP---FRLNKKKRFEGHSVA 432 (503)
T ss_pred ---------------------c--hhhccCcceecCCCCCeehhhccCc---eEEEEecccc---cccCHhhhhcceecc
Confidence 0 0012334677889999999888887 8888886432 1122333455553
Q ss_pred --eeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCC-EEEEEEccceeccccEEEEE
Q 005140 515 --ANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGR-YVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 515 --v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~-~l~t~s~~~~~~d~~v~iw~ 588 (712)
...+.|||||++|++|.. +|.+.+||..+.+++.. .|...++.+.|.|-.. .+|+++. ||.|+||+
T Consensus 433 Gys~~v~fSpDG~~l~SGds---dG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w-----~G~Ikiwd 503 (503)
T KOG0282|consen 433 GYSCQVDFSPDGRTLCSGDS---DGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGW-----DGLIKIWD 503 (503)
T ss_pred CceeeEEEcCCCCeEEeecC---CccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEeccc-----CceeEecC
Confidence 356899999999999998 99999999999888875 6678999999999654 6888888 99999995
No 29
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=1.9e-29 Score=239.76 Aligned_cols=274 Identities=18% Similarity=0.363 Sum_probs=219.3
Q ss_pred CcccceEEEcCCCcEEEEEecCc-eEEeecccCcc--eeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEE
Q 005140 213 YWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN--RLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINI 289 (712)
Q Consensus 213 ~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~--~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~i 289 (712)
...|..|.|.|+|+.|++|+..| +.+|++. ++. .+.+-|...|+++.||++|.++++|+.+ |.|++
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~-~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~g----------G~iKy 164 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGT-SFNFETILQAHDSPVRTMKWSHNGTWMISGDKG----------GMIKY 164 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCc-eeeHHHHhhhhcccceeEEEccCCCEEEEcCCC----------ceEEe
Confidence 35788999999999999999999 8899986 443 3333344459999999999999999999 99999
Q ss_pred EEccCCceeeeccCCC-cccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEE
Q 005140 290 FDVRTGKVMRDFKGSA-DEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFS 367 (712)
Q Consensus 290 wd~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~ 367 (712)
|+. +...++.+..|. ..+. +++||| ++..|++++ ||+|+|||....+....+..|.-.|.+++
T Consensus 165 Wqp-nmnnVk~~~ahh~eaIR-------------dlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvd 229 (464)
T KOG0284|consen 165 WQP-NMNNVKIIQAHHAEAIR-------------DLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVD 229 (464)
T ss_pred ccc-chhhhHHhhHhhhhhhh-------------eeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceec
Confidence 996 566677777776 4432 799999 888888888 99999999887666555667777899999
Q ss_pred ECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEE
Q 005140 368 WSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRI 447 (712)
Q Consensus 368 ~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l 447 (712)
|+|....|++ +|.|+.+++ ||..+ |..|
T Consensus 230 WHP~kgLias-----gskDnlVKl--WDprS----------------------g~cl----------------------- 257 (464)
T KOG0284|consen 230 WHPTKGLIAS-----GSKDNLVKL--WDPRS----------------------GSCL----------------------- 257 (464)
T ss_pred cCCccceeEE-----ccCCceeEe--ecCCC----------------------cchh-----------------------
Confidence 9999999998 778775554 33222 2222
Q ss_pred ecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCC
Q 005140 448 KERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGR 525 (712)
Q Consensus 448 ~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~ 525 (712)
.++.+|+..|..+.|+|++++|++++.|. .+++||+++.+ .+..+.+| .++++.|+|-..
T Consensus 258 ---------~tlh~HKntVl~~~f~~n~N~Llt~skD~---~~kv~DiR~mk------El~~~r~Hkkdv~~~~WhP~~~ 319 (464)
T KOG0284|consen 258 ---------ATLHGHKNTVLAVKFNPNGNWLLTGSKDQ---SCKVFDIRTMK------ELFTYRGHKKDVTSLTWHPLNE 319 (464)
T ss_pred ---------hhhhhccceEEEEEEcCCCCeeEEccCCc---eEEEEehhHhH------HHHHhhcchhhheeeccccccc
Confidence 23457889999999999999999999999 99999998544 45555555 689999999654
Q ss_pred -eEEEEeccCCCceEEEEECCcceeee---eccccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 526 -FIVLAGLKGFNGQLEFYNVDELETMA---TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 526 -~l~~~~~~~~dg~v~iwd~~~~~~~~---~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
.|.+++. ||.|.+|.+...+.+. ..|...|++++|+|=|..|++|+. |.++++|.-.
T Consensus 320 ~lftsgg~---Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsn-----d~t~rfw~r~ 380 (464)
T KOG0284|consen 320 SLFTSGGS---DGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSN-----DRTVRFWTRN 380 (464)
T ss_pred cceeeccC---CCceEEEeccccccccCCCcccccceeeeeccccceeEeecCC-----CcceeeeccC
Confidence 5666776 9999999988444433 378899999999999999999999 9999999754
No 30
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=4.7e-28 Score=217.34 Aligned_cols=284 Identities=16% Similarity=0.273 Sum_probs=232.3
Q ss_pred ccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee----cCCCeeEEEecCC-CCEEEEEcCCCCCCCc
Q 005140 207 PVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY----AHPQVKLIDFSPG-EKYLVTYSSHEPSNPR 280 (712)
Q Consensus 207 ~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~----~~~~v~~i~~Spd-g~~l~t~s~d~~~~~~ 280 (712)
..+++|...|.+|+|+.+|+.||+++.++ +.+|+++ ........ ++..|-.++|+|. ...+++++.+
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e-~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~d------ 86 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLE-RDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGD------ 86 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEec-chhhhhhhcccCCCcchhhheeCCCCCcceEEecCC------
Confidence 45688999999999999999999999999 7899998 44433322 3445888999885 5688999999
Q ss_pred CCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccccccc
Q 005140 281 DANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLK 359 (712)
Q Consensus 281 ~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~ 359 (712)
.+|++||++.+++..........+ .+.|+| +|.+++.++ |..|.+.|..+.+........
T Consensus 87 ----k~ir~wd~r~~k~~~~i~~~~eni--------------~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~~~ 147 (313)
T KOG1407|consen 87 ----KTIRIWDIRSGKCTARIETKGENI--------------NITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQFK 147 (313)
T ss_pred ----ceEEEEEeccCcEEEEeeccCcce--------------EEEEcC-CCCEEEEecCcccEEEEEecccceeehhccc
Confidence 899999999999999888777766 689999 999999999 999999999877766544333
Q ss_pred ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccccc
Q 005140 360 VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTY 439 (712)
Q Consensus 360 ~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~ 439 (712)
.. +..++|+-++..+.. .++.+.|-++..|+.+++...+.++..+.++.|+|+|+|+|+++.|..
T Consensus 148 ~e-~ne~~w~~~nd~Ffl-------t~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAl------- 212 (313)
T KOG1407|consen 148 FE-VNEISWNNSNDLFFL-------TNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADAL------- 212 (313)
T ss_pred ce-eeeeeecCCCCEEEE-------ecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccce-------
Confidence 33 788899977776666 556667778888999999999999999999999999999999999977
Q ss_pred ccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-CCceeEE
Q 005140 440 TGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANAL 518 (712)
Q Consensus 440 ~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l 518 (712)
+.||++.+-- ....++.+..+|..++||.+|++||+++.|. .|-|-++++|. .+..++ ..+...+
T Consensus 213 --vSLWD~~ELi---C~R~isRldwpVRTlSFS~dg~~lASaSEDh---~IDIA~vetGd------~~~eI~~~~~t~tV 278 (313)
T KOG1407|consen 213 --VSLWDVDELI---CERCISRLDWPVRTLSFSHDGRMLASASEDH---FIDIAEVETGD------RVWEIPCEGPTFTV 278 (313)
T ss_pred --eeccChhHhh---hheeeccccCceEEEEeccCcceeeccCccc---eEEeEecccCC------eEEEeeccCCceeE
Confidence 7899887532 2344556699999999999999999999998 78888887776 566665 4578999
Q ss_pred EEccCCCeEEEEeccCCC------ceEEEEECC
Q 005140 519 FWSPSGRFIVLAGLKGFN------GQLEFYNVD 545 (712)
Q Consensus 519 ~~spdg~~l~~~~~~~~d------g~v~iwd~~ 545 (712)
+|+|...+||.++....+ |.|++|-+.
T Consensus 279 AWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 279 AWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred EecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 999999999998865433 677777654
No 31
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.1e-28 Score=227.62 Aligned_cols=303 Identities=19% Similarity=0.256 Sum_probs=238.8
Q ss_pred EecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee--cCCCeeEEEecCCCCEEEEEc
Q 005140 196 LWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY--AHPQVKLIDFSPGEKYLVTYS 272 (712)
Q Consensus 196 ~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~--~~~~v~~i~~Spdg~~l~t~s 272 (712)
.|-. .......+.+|..+|+.+-|+|+-..+|+++.++ |++||.. +++....+ |...|.+|+|+..|++||+++
T Consensus 93 ~wip--Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~-tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcS 169 (406)
T KOG0295|consen 93 LWIP--RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTE-TGELERSLRGHTDSVFDISFDASGKYLATCS 169 (406)
T ss_pred hcCC--CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEcc-chhhhhhhhccccceeEEEEecCccEEEecC
Confidence 4544 3334456778999999999999999999999998 8899999 77765544 444599999999999999999
Q ss_pred CCCCCCCcCCCccEEEEEEccC-CceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCc
Q 005140 273 SHEPSNPRDANRVVINIFDVRT-GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESF 350 (712)
Q Consensus 273 ~d~~~~~~~~~~~~I~iwd~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~ 350 (712)
.| -.+++||..+ -++++.+.+|...+. ++.|-| .|.+|++++ |++|+.|++.++
T Consensus 170 sD----------l~~~LWd~~~~~~c~ks~~gh~h~vS-------------~V~f~P-~gd~ilS~srD~tik~We~~tg 225 (406)
T KOG0295|consen 170 SD----------LSAKLWDFDTFFRCIKSLIGHEHGVS-------------SVFFLP-LGDHILSCSRDNTIKAWECDTG 225 (406)
T ss_pred Cc----------cchhheeHHHHHHHHHHhcCccccee-------------eEEEEe-cCCeeeecccccceeEEecccc
Confidence 99 6799999876 467888888877664 789999 999999999 999999999999
Q ss_pred eecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc-ceeeeeeeeecceeEEECcCCCEEEEEEc
Q 005140 351 TLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE-ELRQKNLFSVSDCKMYWQSSGDYLAVKVD 429 (712)
Q Consensus 351 ~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~g~~l~~~~~ 429 (712)
-.+.....|.+-|..+..+.||.++|+ ++.++.+++|......-+ .++. +....-.++|.|...+-.+
T Consensus 226 ~cv~t~~~h~ewvr~v~v~~DGti~As-----~s~dqtl~vW~~~t~~~k~~lR~---hEh~vEci~wap~~~~~~i--- 294 (406)
T KOG0295|consen 226 YCVKTFPGHSEWVRMVRVNQDGTIIAS-----CSNDQTLRVWVVATKQCKAELRE---HEHPVECIAWAPESSYPSI--- 294 (406)
T ss_pred eeEEeccCchHhEEEEEecCCeeEEEe-----cCCCceEEEEEeccchhhhhhhc---cccceEEEEecccccCcch---
Confidence 988888888888999999999999999 888888888776543221 1111 1112222344443321000
Q ss_pred ccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEE
Q 005140 430 RYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTT 509 (712)
Q Consensus 430 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~ 509 (712)
.. - +.+. ..++++.+++.|+ +|++||+.++. .+.+
T Consensus 295 ---------------~~------------a-t~~~--------~~~~~l~s~SrDk---tIk~wdv~tg~------cL~t 329 (406)
T KOG0295|consen 295 ---------------SE------------A-TGST--------NGGQVLGSGSRDK---TIKIWDVSTGM------CLFT 329 (406)
T ss_pred ---------------hh------------c-cCCC--------CCccEEEeecccc---eEEEEeccCCe------EEEE
Confidence 00 0 0000 0356888999999 99999998765 7777
Q ss_pred eCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEE
Q 005140 510 LKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFN 585 (712)
Q Consensus 510 ~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~ 585 (712)
+.+| .|..++|+|.|+||+++.. |++|++||+++++++.+ .|..-++++.|..+-.|+++|+- |..++
T Consensus 330 L~ghdnwVr~~af~p~Gkyi~ScaD---Dktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsV-----dqt~K 401 (406)
T KOG0295|consen 330 LVGHDNWVRGVAFSPGGKYILSCAD---DKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSV-----DQTVK 401 (406)
T ss_pred EecccceeeeeEEcCCCeEEEEEec---CCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccc-----cceee
Confidence 7766 6999999999999999998 99999999999999886 56688999999999999999999 99999
Q ss_pred EEEe
Q 005140 586 IWSF 589 (712)
Q Consensus 586 iw~~ 589 (712)
+|..
T Consensus 402 vwEc 405 (406)
T KOG0295|consen 402 VWEC 405 (406)
T ss_pred eeec
Confidence 9963
No 32
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=9.2e-29 Score=254.78 Aligned_cols=266 Identities=13% Similarity=0.261 Sum_probs=216.3
Q ss_pred CcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEE
Q 005140 213 YWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFD 291 (712)
Q Consensus 213 ~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd 291 (712)
...++|..||+|++.||.|..+. |++|.+. .. .+..+.+.. +...+=+.+.| ..+.+.|
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~-p~-kl~~lk~~~--------~l~~~d~~sad----------~~~~~~D 437 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLT-PK-KLKKLKDAS--------DLSNIDTESAD----------VDVDMLD 437 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecc-hh-hhccccchh--------hhccccccccc----------hhhhhcc
Confidence 35688999999999999999888 8899987 32 333332221 01112233344 3355666
Q ss_pred ccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECC
Q 005140 292 VRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSP 370 (712)
Q Consensus 292 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp 370 (712)
-.++...+++.+|.+++. .++|+| +.++|++++ |+++++|.+.+...+-....|..+|.++.|+|
T Consensus 438 ~~~~~~~~~L~GH~GPVy-------------g~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P 503 (707)
T KOG0263|consen 438 DDSSGTSRTLYGHSGPVY-------------GCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP 503 (707)
T ss_pred ccCCceeEEeecCCCcee-------------eeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC
Confidence 666667778889988873 589999 999999999 99999999999988877789999999999999
Q ss_pred CCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecC
Q 005140 371 TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKER 450 (712)
Q Consensus 371 ~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 450 (712)
-|-++|+ ++.|+++++|..+.... +
T Consensus 504 ~GyYFat-----as~D~tArLWs~d~~~P------------------------------------------l-------- 528 (707)
T KOG0263|consen 504 RGYYFAT-----ASHDQTARLWSTDHNKP------------------------------------------L-------- 528 (707)
T ss_pred CceEEEe-----cCCCceeeeeecccCCc------------------------------------------h--------
Confidence 9999999 88999998875442100 0
Q ss_pred CcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEE
Q 005140 451 DIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIV 528 (712)
Q Consensus 451 ~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~ 528 (712)
..+.+|...|.|+.|+|++.|+++|+.|. +|++||+.++. .++.+.+| +|.+++|||+|++|+
T Consensus 529 ------RifaghlsDV~cv~FHPNs~Y~aTGSsD~---tVRlWDv~~G~------~VRiF~GH~~~V~al~~Sp~Gr~La 593 (707)
T KOG0263|consen 529 ------RIFAGHLSDVDCVSFHPNSNYVATGSSDR---TVRLWDVSTGN------SVRIFTGHKGPVTALAFSPCGRYLA 593 (707)
T ss_pred ------hhhcccccccceEEECCcccccccCCCCc---eEEEEEcCCCc------EEEEecCCCCceEEEEEcCCCceEe
Confidence 11337899999999999999999999999 99999998876 45555555 899999999999999
Q ss_pred EEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 529 LAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 529 ~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
+|+. ||.|.+||+.++.++.. .|.+.+.++.||.+|..||+++. |++|++||+.
T Consensus 594 Sg~e---d~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~-----DnsV~lWD~~ 649 (707)
T KOG0263|consen 594 SGDE---DGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGA-----DNSVRLWDLT 649 (707)
T ss_pred eccc---CCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCC-----CCeEEEEEch
Confidence 9998 99999999999888775 67899999999999999999999 9999999975
No 33
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.5e-28 Score=225.84 Aligned_cols=307 Identities=15% Similarity=0.246 Sum_probs=245.7
Q ss_pred CCCCCCCCCCCCCCCCc---cchhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEE
Q 005140 154 VPDEWAPPEHKPYTPGE---NLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLAT 230 (712)
Q Consensus 154 ~~~~~~~p~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat 230 (712)
.|..|.|++..++.... .+...+++|. ....++.+.+.++.+|+. ..++.+..+++|...+..++|+..|++||+
T Consensus 90 ~~~~wipRp~l~~~l~g~r~~vt~v~~hp~-~~~v~~as~d~tikv~D~-~tg~~e~~LrGHt~sv~di~~~a~Gk~l~t 167 (406)
T KOG0295|consen 90 TPALWIPRPNLVQKLAGHRSSVTRVIFHPS-EALVVSASEDATIKVFDT-ETGELERSLRGHTDSVFDISFDASGKYLAT 167 (406)
T ss_pred ChhhcCCCCCchhhhhccccceeeeeeccC-ceEEEEecCCceEEEEEc-cchhhhhhhhccccceeEEEEecCccEEEe
Confidence 56678887766654333 2334455553 234455556899999999 677778999999999999999999999999
Q ss_pred EecCc-eEEeecccCcceeeeec-CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcc
Q 005140 231 VHRQG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADE 307 (712)
Q Consensus 231 ~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~ 307 (712)
++.|- +.+||..+.+.++.... |. .|.++.|-|.|.+|++++.| .+|+.|++.+|-++.+|.+|..-
T Consensus 168 cSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD----------~tik~We~~tg~cv~t~~~h~ew 237 (406)
T KOG0295|consen 168 CSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRD----------NTIKAWECDTGYCVKTFPGHSEW 237 (406)
T ss_pred cCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccc----------cceeEEecccceeEEeccCchHh
Confidence 99998 88999984455554442 33 49999999999999999999 89999999999999999999886
Q ss_pred cccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCC
Q 005140 308 FAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGN 386 (712)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~ 386 (712)
+. .++.+. ||.++|+++ |.+|++|-+.++........|.-.|.+++|.|...+=.+ .+
T Consensus 238 vr-------------~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i-------~~ 296 (406)
T KOG0295|consen 238 VR-------------MVRVNQ-DGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSI-------SE 296 (406)
T ss_pred EE-------------EEEecC-CeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcch-------hh
Confidence 53 688888 999999999 999999999988766666678888999999997542221 00
Q ss_pred CCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCce
Q 005140 387 QPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKI 466 (712)
Q Consensus 387 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v 466 (712)
.... ...|.++.+++.|.+ +++|++... ...+++.+|...|
T Consensus 297 at~~---------------------------~~~~~~l~s~SrDkt---------Ik~wdv~tg---~cL~tL~ghdnwV 337 (406)
T KOG0295|consen 297 ATGS---------------------------TNGGQVLGSGSRDKT---------IKIWDVSTG---MCLFTLVGHDNWV 337 (406)
T ss_pred ccCC---------------------------CCCccEEEeecccce---------EEEEeccCC---eEEEEEeccccee
Confidence 0000 124568888888887 889998754 4567888999999
Q ss_pred EEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEeccCCCceEEEEEC
Q 005140 467 IAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNV 544 (712)
Q Consensus 467 ~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~ 544 (712)
..++|+|.|+||+++..|+ +|++||+++++ ..+++. .+-++++.|..+-.++++|+. |..+++|..
T Consensus 338 r~~af~p~Gkyi~ScaDDk---tlrvwdl~~~~------cmk~~~ah~hfvt~lDfh~~~p~VvTGsV---dqt~KvwEc 405 (406)
T KOG0295|consen 338 RGVAFSPGGKYILSCADDK---TLRVWDLKNLQ------CMKTLEAHEHFVTSLDFHKTAPYVVTGSV---DQTVKVWEC 405 (406)
T ss_pred eeeEEcCCCeEEEEEecCC---cEEEEEeccce------eeeccCCCcceeEEEecCCCCceEEeccc---cceeeeeec
Confidence 9999999999999999999 99999997654 444444 556899999999999999998 999999964
No 34
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=8.4e-27 Score=235.59 Aligned_cols=279 Identities=20% Similarity=0.365 Sum_probs=221.9
Q ss_pred ccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee-cC-CCeeEEEecCCCCEEEEEcCCCCCCCcCCC
Q 005140 207 PVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-AH-PQVKLIDFSPGEKYLVTYSSHEPSNPRDAN 283 (712)
Q Consensus 207 ~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~-~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~ 283 (712)
..+++|...|++++|+|+|++|++++.++ +.+|+.. +......+ .| ..+..+.|+|++++|++++.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~--------- 72 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLE-TGELLRTLKGHTGPVRDVAASADGTYLASGSSD--------- 72 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEee-CCCcEEEEecCCcceeEEEECCCCCEEEEEcCC---------
Confidence 45678999999999999999999999888 8899998 55544444 23 348899999999999999998
Q ss_pred ccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccC
Q 005140 284 RVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVEN 362 (712)
Q Consensus 284 ~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~ 362 (712)
+.|++|++.+++.+..+..+...+. ++.|++ +++++++++ ++.|.+|++.+++.......+...
T Consensus 73 -~~i~i~~~~~~~~~~~~~~~~~~i~-------------~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 137 (289)
T cd00200 73 -KTIRLWDLETGECVRTLTGHTSYVS-------------SVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDW 137 (289)
T ss_pred -CeEEEEEcCcccceEEEeccCCcEE-------------EEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCc
Confidence 9999999998888888887765542 689999 999999999 999999999977766555556667
Q ss_pred eeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccE
Q 005140 363 VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGF 442 (712)
Q Consensus 363 v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~ 442 (712)
+.+++|+|++.++++ ++.++.+.+ |+....+
T Consensus 138 i~~~~~~~~~~~l~~-----~~~~~~i~i--~d~~~~~------------------------------------------ 168 (289)
T cd00200 138 VNSVAFSPDGTFVAS-----SSQDGTIKL--WDLRTGK------------------------------------------ 168 (289)
T ss_pred EEEEEEcCcCCEEEE-----EcCCCcEEE--EEccccc------------------------------------------
Confidence 999999999888876 333444443 3322110
Q ss_pred EEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEE
Q 005140 443 ELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFW 520 (712)
Q Consensus 443 ~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~ 520 (712)
. ...+..|...+.+++|+|+++.+++++.++ .|++|++..+. .+..+. ...+.++.|
T Consensus 169 ----------~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~---~i~i~d~~~~~------~~~~~~~~~~~i~~~~~ 227 (289)
T cd00200 169 ----------C--VATLTGHTGEVNSVAFSPDGEKLLSSSSDG---TIKLWDLSTGK------CLGTLRGHENGVNSVAF 227 (289)
T ss_pred ----------c--ceeEecCccccceEEECCCcCEEEEecCCC---cEEEEECCCCc------eecchhhcCCceEEEEE
Confidence 0 011224567899999999999999999888 89999997643 344442 337899999
Q ss_pred ccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 521 SPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 521 spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
+|++.++++++. +|.|++|++.+++.+.. .+...+.+++|+|++++|++++. |+.+++|+
T Consensus 228 ~~~~~~~~~~~~---~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----d~~i~iw~ 289 (289)
T cd00200 228 SPDGYLLASGSE---DGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSA-----DGTIRIWD 289 (289)
T ss_pred cCCCcEEEEEcC---CCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecC-----CCeEEecC
Confidence 999999998886 89999999997766654 45578999999999999999999 99999995
No 35
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=1.8e-28 Score=233.08 Aligned_cols=272 Identities=17% Similarity=0.306 Sum_probs=221.1
Q ss_pred CCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecC-CC
Q 005140 178 DEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAH-PQ 255 (712)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~-~~ 255 (712)
.|.||-. ++++..|-.-+||. .....+..++.|...|+++.||++|.++++|+.+| |++|+..-+...+...+| ..
T Consensus 105 tPeGRRL-ltgs~SGEFtLWNg-~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~ea 182 (464)
T KOG0284|consen 105 TPEGRRL-LTGSQSGEFTLWNG-TSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEA 182 (464)
T ss_pred cCCCcee-EeecccccEEEecC-ceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhh
Confidence 4567744 55555666669999 56777778899999999999999999999999999 889998723333334456 56
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEE
Q 005140 256 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA 335 (712)
Q Consensus 256 v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la 335 (712)
|++++|||+...+++++.| ++|+|||....+..+.+.+|.-.+. ++.|.| .-.+||
T Consensus 183 IRdlafSpnDskF~t~SdD----------g~ikiWdf~~~kee~vL~GHgwdVk-------------svdWHP-~kgLia 238 (464)
T KOG0284|consen 183 IRDLAFSPNDSKFLTCSDD----------GTIKIWDFRMPKEERVLRGHGWDVK-------------SVDWHP-TKGLIA 238 (464)
T ss_pred hheeccCCCCceeEEecCC----------CeEEEEeccCCchhheeccCCCCcc-------------eeccCC-ccceeE
Confidence 9999999999999999999 9999999998888888999887764 799999 989999
Q ss_pred Eec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeeccee
Q 005140 336 KLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCK 414 (712)
Q Consensus 336 ~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 414 (712)
+++ |+.|++||..++..+.....|...|..+.|+|++++|++ +|.|..++++ |+...+.+.....+.....+
T Consensus 239 sgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt-----~skD~~~kv~--DiR~mkEl~~~r~Hkkdv~~ 311 (464)
T KOG0284|consen 239 SGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLT-----GSKDQSCKVF--DIRTMKELFTYRGHKKDVTS 311 (464)
T ss_pred EccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEE-----ccCCceEEEE--ehhHhHHHHHhhcchhhhee
Confidence 999 999999999999999888888889999999999999999 8888876654 55566666666666777778
Q ss_pred EEECcCCC-EEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEE
Q 005140 415 MYWQSSGD-YLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFY 493 (712)
Q Consensus 415 ~~~s~~g~-~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~ 493 (712)
+.|+|-.. .|.++..++. +..|.+.. ..|+..+.. +|...|.+++|+|-|..||+++.|. ++++|
T Consensus 312 ~~WhP~~~~lftsgg~Dgs---------vvh~~v~~-~~p~~~i~~-AHd~~iwsl~~hPlGhil~tgsnd~---t~rfw 377 (464)
T KOG0284|consen 312 LTWHPLNESLFTSGGSDGS---------VVHWVVGL-EEPLGEIPP-AHDGEIWSLAYHPLGHILATGSNDR---TVRFW 377 (464)
T ss_pred eccccccccceeeccCCCc---------eEEEeccc-cccccCCCc-ccccceeeeeccccceeEeecCCCc---ceeee
Confidence 89999765 4555666665 66777652 123222333 8999999999999999999999999 99999
Q ss_pred Eee
Q 005140 494 SMR 496 (712)
Q Consensus 494 d~~ 496 (712)
.-.
T Consensus 378 ~r~ 380 (464)
T KOG0284|consen 378 TRN 380 (464)
T ss_pred ccC
Confidence 864
No 36
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=2.4e-27 Score=222.65 Aligned_cols=323 Identities=13% Similarity=0.160 Sum_probs=233.1
Q ss_pred CCcccccCCCcccceEEEcCCCcEEEEEecCce-EEeecccCcceeeee-cCC-CeeEEEecCCCCEEEEEcCCCCCCCc
Q 005140 204 KPEPVYKRSYWTESFVQWSPLGTYLATVHRQGA-AVWGGANTFNRLMRY-AHP-QVKLIDFSPGEKYLVTYSSHEPSNPR 280 (712)
Q Consensus 204 ~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~i-~iw~~~~~~~~~~~~-~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~ 280 (712)
.....|..|..+|.+++.+|+.+++|||+.|.. .||+.. ++.....+ .|. .|.++.||.||.|||||..+
T Consensus 55 dS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~-~ge~~~eltgHKDSVt~~~FshdgtlLATGdms------ 127 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDIS-TGEFAGELTGHKDSVTCCSFSHDGTLLATGDMS------ 127 (399)
T ss_pred cceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEcc-CCcceeEecCCCCceEEEEEccCceEEEecCCC------
Confidence 345678999999999999999999999999985 599999 66665555 355 49999999999999999999
Q ss_pred CCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccccccc
Q 005140 281 DANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLK 359 (712)
Q Consensus 281 ~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~ 359 (712)
|.|+||...+|.....+...-. .+.| +.|.| .+.+|+.++ ||.+.+|.+++.........|
T Consensus 128 ----G~v~v~~~stg~~~~~~~~e~~-----------dieW--l~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh 189 (399)
T KOG0296|consen 128 ----GKVLVFKVSTGGEQWKLDQEVE-----------DIEW--LKWHP-RAHILLAGSTDGSVWMWQIPSQALCKVMSGH 189 (399)
T ss_pred ----ccEEEEEcccCceEEEeecccC-----------ceEE--EEecc-cccEEEeecCCCcEEEEECCCcceeeEecCC
Confidence 9999999999998888763322 2346 79999 999999999 999999999987666666778
Q ss_pred ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccccc
Q 005140 360 VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTY 439 (712)
Q Consensus 360 ~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~ 439 (712)
..++++=.|.|+|+.+++ +..++.+++| +..+.+++...+
T Consensus 190 ~~~ct~G~f~pdGKr~~t-----gy~dgti~~W--n~ktg~p~~~~~--------------------------------- 229 (399)
T KOG0296|consen 190 NSPCTCGEFIPDGKRILT-----GYDDGTIIVW--NPKTGQPLHKIT--------------------------------- 229 (399)
T ss_pred CCCcccccccCCCceEEE-----EecCceEEEE--ecCCCceeEEec---------------------------------
Confidence 888899999999999988 5566665544 333332221111
Q ss_pred ccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccC----ceeEEEEeCCCc-
Q 005140 440 TGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAG----RVSKLTTLKGKQ- 514 (712)
Q Consensus 440 ~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~----~~~~~~~~~~~~- 514 (712)
.. -.....++.++..+..+..++.++ .+++-+..+++... ....+..-..+.
T Consensus 230 ---------~~-----------e~~~~~~~~~~~~~~~~~~g~~e~---~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~ 286 (399)
T KOG0296|consen 230 ---------QA-----------EGLELPCISLNLAGSTLTKGNSEG---VACGVNNGSGKVVNCNNGTVPELKPSQEELD 286 (399)
T ss_pred ---------cc-----------ccCcCCccccccccceeEeccCCc---cEEEEccccceEEEecCCCCccccccchhhh
Confidence 00 011222344444444444444444 33333332221000 000011111122
Q ss_pred --eeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee-ccccceeeEEECCCCCEEEEEEccceeccccEEEEEec-
Q 005140 515 --ANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN- 590 (712)
Q Consensus 515 --v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~-~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~- 590 (712)
+-.+.||..=...|+|+. ||+|.|||+...++... .|...|+.+.|-+ ..||++++. ++.|++||..
T Consensus 287 esve~~~~ss~lpL~A~G~v---dG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~-----~g~v~~wDaRt 357 (399)
T KOG0296|consen 287 ESVESIPSSSKLPLAACGSV---DGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACA-----NGKVRQWDART 357 (399)
T ss_pred hhhhhcccccccchhhcccc---cceEEEEecccchhheeccCCCceEEEEEcC-cchheeecc-----CceEEeeeccc
Confidence 344555555667777777 99999999998777665 4557899999999 789999999 9999999975
Q ss_pred Cceeeee--cccceeeeEEecCCCCCCChhhHHHH
Q 005140 591 GKLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEI 623 (712)
Q Consensus 591 g~~~~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i 623 (712)
|+++... |...|..++.+|+.+.++|.|.|.+.
T Consensus 358 G~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a 392 (399)
T KOG0296|consen 358 GQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTA 392 (399)
T ss_pred cceEEEEecCchheeEEEEcCCCcEEEEecCCCeE
Confidence 7776654 77899999999999999999988653
No 37
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=5.6e-27 Score=249.56 Aligned_cols=281 Identities=16% Similarity=0.307 Sum_probs=226.0
Q ss_pred CCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcc--eeeee--cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCcc
Q 005140 211 RSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN--RLMRY--AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRV 285 (712)
Q Consensus 211 ~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~--~~~~~--~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~ 285 (712)
.|.+.+.|+.|||+|++|++++.++ +++|+.. ... .+..+ +...|.+++|||+|++|++++.| +
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~-~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D----------~ 225 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLE-GIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDD----------K 225 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecc-cccchhhccccccccceeeeEECCCCcEEEEecCC----------c
Confidence 3478999999999999999999999 7799996 444 44443 44469999999999999999999 9
Q ss_pred EEEEEEc-cCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCe
Q 005140 286 VINIFDV-RTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENV 363 (712)
Q Consensus 286 ~I~iwd~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v 363 (712)
+|+|||+ ..+..++++.+|...+. +++|+| +|+++++++ |++|+||++.+++++.....|.++|
T Consensus 226 tiriwd~~~~~~~~~~l~gH~~~v~-------------~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~i 291 (456)
T KOG0266|consen 226 TLRIWDLKDDGRNLKTLKGHSTYVT-------------SVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGI 291 (456)
T ss_pred eEEEeeccCCCeEEEEecCCCCceE-------------EEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCce
Confidence 9999999 56689999999988874 799999 999999999 9999999999999998899999999
Q ss_pred eeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEE
Q 005140 364 MDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFE 443 (712)
Q Consensus 364 ~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 443 (712)
.+++|++++++|++ ++.|+.++||... +.... +.
T Consensus 292 s~~~f~~d~~~l~s-----~s~d~~i~vwd~~--~~~~~----------------------~~----------------- 325 (456)
T KOG0266|consen 292 SGLAFSPDGNLLVS-----ASYDGTIRVWDLE--TGSKL----------------------CL----------------- 325 (456)
T ss_pred EEEEECCCCCEEEE-----cCCCccEEEEECC--CCcee----------------------ee-----------------
Confidence 99999999999998 6666666655432 21100 00
Q ss_pred EEEEecCCcceeEEEecCCCC--ceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC-----cee
Q 005140 444 LFRIKERDIPIEVLELDNKND--KIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK-----QAN 516 (712)
Q Consensus 444 l~~l~~~~~~~~~~~l~~h~~--~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-----~v~ 516 (712)
..+.++.. ++++++|+|++.++++++.|+ .+++|++..+. .+....++ .+.
T Consensus 326 -------------~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~---~~~~w~l~~~~------~~~~~~~~~~~~~~~~ 383 (456)
T KOG0266|consen 326 -------------KLLSGAENSAPVTSVQFSPNGKYLLSASLDR---TLKLWDLRSGK------SVGTYTGHSNLVRCIF 383 (456)
T ss_pred -------------ecccCCCCCCceeEEEECCCCcEEEEecCCC---eEEEEEccCCc------ceeeecccCCcceeEe
Confidence 00111121 689999999999999999999 99999997654 23333322 233
Q ss_pred EEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--cc-ccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 517 ALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AE-HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 517 ~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~-~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
....++.|+++++++. |+.|++|++.++..+.. .| ...+..+.|+|...++++++. ..|+.+++|...
T Consensus 384 ~~~~~~~~~~i~sg~~---d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~---~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 384 SPTLSTGGKLIYSGSE---DGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSF---EGDGLIRLWKYD 454 (456)
T ss_pred cccccCCCCeEEEEeC---CceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCc---CCCceEEEecCC
Confidence 4555889999999998 99999999998776654 56 678889999999999999994 118999999865
No 38
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=6.4e-26 Score=260.10 Aligned_cols=285 Identities=9% Similarity=0.159 Sum_probs=212.0
Q ss_pred ccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccC---cc----eeeee-cCCCeeEEEecCC-CCEEEEEcCCCCCC
Q 005140 209 YKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANT---FN----RLMRY-AHPQVKLIDFSPG-EKYLVTYSSHEPSN 278 (712)
Q Consensus 209 ~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~---~~----~~~~~-~~~~v~~i~~Spd-g~~l~t~s~d~~~~ 278 (712)
+..|...|++++|+|+|++||+++.++ |+||+.... .. ....+ ++..+.+++|+|. +.+|++++.|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~D---- 554 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFE---- 554 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCC----
Confidence 456889999999999999999999999 889997511 11 12222 3445899999874 7899999999
Q ss_pred CcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccccc
Q 005140 279 PRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKS 357 (712)
Q Consensus 279 ~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~ 357 (712)
++|+|||+.+++.+..+.+|...+. +++|+|.++.+|++++ |+.|++||+.++..+....
T Consensus 555 ------g~v~lWd~~~~~~~~~~~~H~~~V~-------------~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~ 615 (793)
T PLN00181 555 ------GVVQVWDVARSQLVTEMKEHEKRVW-------------SIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK 615 (793)
T ss_pred ------CeEEEEECCCCeEEEEecCCCCCEE-------------EEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence 9999999999999999999987763 6999852678999999 9999999998776554332
Q ss_pred ccccCeeeEEEC-CCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccc
Q 005140 358 LKVENVMDFSWS-PTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKK 436 (712)
Q Consensus 358 ~~~~~v~~~~~s-p~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~ 436 (712)
. ...+.++.|+ +++.+|++ |+.++.+
T Consensus 616 ~-~~~v~~v~~~~~~g~~lat-----gs~dg~I----------------------------------------------- 642 (793)
T PLN00181 616 T-KANICCVQFPSESGRSLAF-----GSADHKV----------------------------------------------- 642 (793)
T ss_pred c-CCCeEEEEEeCCCCCEEEE-----EeCCCeE-----------------------------------------------
Confidence 2 2346666663 34566665 4444433
Q ss_pred cccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--c
Q 005140 437 STYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--Q 514 (712)
Q Consensus 437 ~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~ 514 (712)
.+|+++....+. ..+.+|...|.+++|. ++.+|++++.|+ .|++||+..........++..+.+| .
T Consensus 643 ------~iwD~~~~~~~~--~~~~~h~~~V~~v~f~-~~~~lvs~s~D~---~ikiWd~~~~~~~~~~~~l~~~~gh~~~ 710 (793)
T PLN00181 643 ------YYYDLRNPKLPL--CTMIGHSKTVSYVRFV-DSSTLVSSSTDN---TLKLWDLSMSISGINETPLHSFMGHTNV 710 (793)
T ss_pred ------EEEECCCCCccc--eEecCCCCCEEEEEEe-CCCEEEEEECCC---EEEEEeCCCCccccCCcceEEEcCCCCC
Confidence 333333221111 2344788999999997 788999999999 9999999753211122356666655 5
Q ss_pred eeEEEEccCCCeEEEEeccCCCceEEEEECCcceeee---------------eccccceeeEEECCCCCEEEEEEcccee
Q 005140 515 ANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA---------------TAEHFMATDVEWDPTGRYVATAVTSVHE 579 (712)
Q Consensus 515 v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~---------------~~~~~~v~~~~~spdg~~l~t~s~~~~~ 579 (712)
++.++|+|+|.+|++++. |+.|++|+......+. ..+...|.+++|+|+|.+|++++.
T Consensus 711 i~~v~~s~~~~~lasgs~---D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~---- 783 (793)
T PLN00181 711 KNFVGLSVSDGYIATGSE---TNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANS---- 783 (793)
T ss_pred eeEEEEcCCCCEEEEEeC---CCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecC----
Confidence 788999999999999998 9999999976443221 112346899999999999999999
Q ss_pred ccccEEEEEe
Q 005140 580 MENGFNIWSF 589 (712)
Q Consensus 580 ~d~~v~iw~~ 589 (712)
+|.|+||++
T Consensus 784 -dG~I~i~~~ 792 (793)
T PLN00181 784 -TGNIKILEM 792 (793)
T ss_pred -CCcEEEEec
Confidence 999999985
No 39
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=1.9e-24 Score=211.01 Aligned_cols=399 Identities=13% Similarity=0.198 Sum_probs=279.4
Q ss_pred hhccCCCCCce----E------EEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecC---------
Q 005140 174 KWLTDEKARDQ----F------VIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQ--------- 234 (712)
Q Consensus 174 ~~~~~~~~~~~----~------~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~--------- 234 (712)
.|++..+|++. | ++.+.-.+.+++|. .....+.+.+|...|.|++.+||--.+|+|-..
T Consensus 57 ewvygYRG~dcR~Nly~lptgE~vyfvA~V~Vl~n~--ee~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~p 134 (626)
T KOG2106|consen 57 EWVYGYRGVDCRNNLYLLPTGELVYFVAAVGVLYNW--EERSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQP 134 (626)
T ss_pred EEEEeecceeeeceeEEccCccEEEEeccEEEEEee--hhhhcccccCCCCceEEEeecCCceeeccCcccccCCCcCCC
Confidence 57777776653 2 23444566777777 344556789999999999999999888876422
Q ss_pred ceEEeecccCcceeeee--cCCCeeEEEecCC--CCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCccccc
Q 005140 235 GAAVWGGANTFNRLMRY--AHPQVKLIDFSPG--EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAV 310 (712)
Q Consensus 235 ~i~iw~~~~~~~~~~~~--~~~~v~~i~~Spd--g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~ 310 (712)
.++|||.. +...+..+ .+.+|.+++||+- |.+|+..... +...+.|||-..+..+...+.....+.
T Consensus 135 hvriWdsv-~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s--------~~h~lSVWdWqk~~~~~~vk~sne~v~- 204 (626)
T KOG2106|consen 135 HVRIWDSV-TLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDS--------NPHMLSVWDWQKKAKLGPVKTSNEVVF- 204 (626)
T ss_pred eeeecccc-cceeeeeeccccccceeeeecccCCCceEEEecCC--------CccccchhhchhhhccCcceeccceEE-
Confidence 27899977 66655554 4667999999984 5666655433 226789999988877766665555442
Q ss_pred CCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceecccccc----cccCeeeEEECCCCCeEEEEeecCCCCC
Q 005140 311 GGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSL----KVENVMDFSWSPTDPIISLFVPELGGGN 386 (712)
Q Consensus 311 ~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~----~~~~v~~~~~sp~~~~la~~~~~~~~~~ 386 (712)
...|.|.+.+++++++.+.+.+|+...+.+..+.-+ ...-|.+++|.++|..+. +|
T Consensus 205 ------------~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviT--------gD 264 (626)
T KOG2106|consen 205 ------------LATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVIT--------GD 264 (626)
T ss_pred ------------EEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEe--------ec
Confidence 578999555688888899999999887765543211 113499999999998765 56
Q ss_pred CCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccc-------------ccccEE--------EE
Q 005140 387 QPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKS-------------TYTGFE--------LF 445 (712)
Q Consensus 387 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~-------------~~~~~~--------l~ 445 (712)
..+.|.+|+....+..++...+......+.--.+|..|- +..|.....|. .++.++ ++
T Consensus 265 S~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~ 343 (626)
T KOG2106|consen 265 SGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDIL 343 (626)
T ss_pred CCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEE
Confidence 667777887766555555446666666666666776654 44333211111 011110 00
Q ss_pred -------EEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEE
Q 005140 446 -------RIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANAL 518 (712)
Q Consensus 446 -------~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l 518 (712)
.+...-...-.+...+|......++.+|+...|++++.|+ .+++|+- .+. ....+-..++.++
T Consensus 344 vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk---~v~lW~~--~k~-----~wt~~~~d~~~~~ 413 (626)
T KOG2106|consen 344 VGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDK---HVRLWND--HKL-----EWTKIIEDPAECA 413 (626)
T ss_pred EeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcc---eEEEccC--Cce-----eEEEEecCceeEe
Confidence 0000000011233447888899999999999999999999 9999992 111 2233335688999
Q ss_pred EEccCCCeEEEEeccCCCceEEEEECCcceeeee-ccccceeeEEECCCCCEEEEEEccceeccccEEEEEec--Cceee
Q 005140 519 FWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN--GKLLY 595 (712)
Q Consensus 519 ~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~-~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~--g~~~~ 595 (712)
.|+|.| .+++|.. .|...+.|.++..++.. ....+++.+.|+|+|.+||.++. |+.|+||.++ |+.+.
T Consensus 414 ~fhpsg-~va~Gt~---~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~-----d~~iyiy~Vs~~g~~y~ 484 (626)
T KOG2106|consen 414 DFHPSG-VVAVGTA---TGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSH-----DNHIYIYRVSANGRKYS 484 (626)
T ss_pred eccCcc-eEEEeec---cceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecC-----CCeEEEEEECCCCcEEE
Confidence 999999 8888888 99999999998665543 23688999999999999999999 9999999886 55444
Q ss_pred ee---cccceeeeEEecCCCCCCChhhHHHHH
Q 005140 596 RT---LKDHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 596 ~~---~~~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
+. +...|+++.||+|+++|.+.+.|-+|-
T Consensus 485 r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiL 516 (626)
T KOG2106|consen 485 RVGKCSGSPITHLDWSSDSQFLVSNSGDYEIL 516 (626)
T ss_pred EeeeecCceeEEeeecCCCceEEeccCceEEE
Confidence 32 448899999999999999988776553
No 40
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.95 E-value=3.5e-26 Score=213.05 Aligned_cols=190 Identities=48% Similarity=0.899 Sum_probs=166.0
Q ss_pred eeeeecceeEEECcCCCEEEEEEc-ccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcC
Q 005140 406 NLFSVSDCKMYWQSSGDYLAVKVD-RYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGD 484 (712)
Q Consensus 406 ~~~~~~~~~~~~s~~g~~l~~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d 484 (712)
+++.+..+.+.|+++|.+|++.+. +..++++++|+...||.++..+.+...+.+. +.++|.+++|+|+|+.||++.+.
T Consensus 2 ~~f~~~~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~-~~~~I~~~~WsP~g~~favi~g~ 80 (194)
T PF08662_consen 2 NFFNVDDAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK-KEGPIHDVAWSPNGNEFAVIYGS 80 (194)
T ss_pred CccccceEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc-CCCceEEEEECcCCCEEEEEEcc
Confidence 567888899999999999999887 4567889999999999999998888888873 35679999999999999988775
Q ss_pred CCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEEC
Q 005140 485 SPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWD 564 (712)
Q Consensus 485 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~s 564 (712)
.+. .|.|||++ ...+..+....++.+.|||+|++|++++.++..|.|.|||.++.+.+.+.++..++.++||
T Consensus 81 ~~~-~v~lyd~~-------~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~Ws 152 (194)
T PF08662_consen 81 MPA-KVTLYDVK-------GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWS 152 (194)
T ss_pred CCc-ccEEEcCc-------ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEc
Confidence 444 89999995 2367788777899999999999999999877789999999999999999888889999999
Q ss_pred CCCCEEEEEEcc-ceeccccEEEEEecCceeeeecccceee
Q 005140 565 PTGRYVATAVTS-VHEMENGFNIWSFNGKLLYRTLKDHFFQ 604 (712)
Q Consensus 565 pdg~~l~t~s~~-~~~~d~~v~iw~~~g~~~~~~~~~~i~~ 604 (712)
|||++|++++.. ++++|++++||++.|+++.+...+++++
T Consensus 153 PdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~~~~l~~ 193 (194)
T PF08662_consen 153 PDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKKPFDELYQ 193 (194)
T ss_pred CCCCEEEEEEeccceeccccEEEEEecCeEeEecchhhhhC
Confidence 999999999987 7888999999999999998877666554
No 41
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=5.1e-25 Score=227.42 Aligned_cols=390 Identities=13% Similarity=0.167 Sum_probs=285.8
Q ss_pred hhccCCCCCc-eEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee
Q 005140 174 KWLTDEKARD-QFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY 251 (712)
Q Consensus 174 ~~~~~~~~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~ 251 (712)
.-+.+|..+- ..++++..+...+||. +.++.+..|+++...|+++.=||-=..+|.|..+| |.|+++. ..+.+..|
T Consensus 163 tal~HP~TYLNKIvvGs~~G~lql~Nv-rt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK-~dkil~sF 240 (910)
T KOG1539|consen 163 TALLHPSTYLNKIVVGSSQGRLQLWNV-RTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLK-FDKILMSF 240 (910)
T ss_pred eeEecchhheeeEEEeecCCcEEEEEe-ccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcc-cCcEEEEE
Confidence 3456666553 4567788888999999 78999999999999999999999999999999999 8899999 89999999
Q ss_pred cCC--CeeEEEecCCCCEE-EEEcCCCCCCCcCCCccEEEEEEccCCceeeecc-CCCcccccCCCCCcCCCCcCeEEec
Q 005140 252 AHP--QVKLIDFSPGEKYL-VTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFK-GSADEFAVGGTGGVAGVSWPVFRWG 327 (712)
Q Consensus 252 ~~~--~v~~i~~Spdg~~l-~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s 327 (712)
.|+ .|++++|..||..+ |+++.. |.+.+||+...+.+..+. .|.+.+ . ...|-
T Consensus 241 k~d~g~VtslSFrtDG~p~las~~~~----------G~m~~wDLe~kkl~~v~~nah~~sv--------~-----~~~fl 297 (910)
T KOG1539|consen 241 KQDWGRVTSLSFRTDGNPLLASGRSN----------GDMAFWDLEKKKLINVTRNAHYGSV--------T-----GATFL 297 (910)
T ss_pred EccccceeEEEeccCCCeeEEeccCC----------ceEEEEEcCCCeeeeeeeccccCCc--------c-----cceec
Confidence 886 39999999999865 455555 899999998777766665 443333 2 35667
Q ss_pred CCCCCEEEEec-CCeEEEEEcCCce----ecccccccccCeeeEEEC-CCCCeEEEEeecCCCCCC--------------
Q 005140 328 GGKDKYFAKLG-KNMISVYETESFT----LIDKKSLKVENVMDFSWS-PTDPIISLFVPELGGGNQ-------------- 387 (712)
Q Consensus 328 ~~dg~~la~~~-d~~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s-p~~~~la~~~~~~~~~~~-------------- 387 (712)
| ....+++.+ |+.+++|-.+++. ++.....|..+..++.|. .+|.++.. ++.|.
T Consensus 298 ~-~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ils-----a~~Drt~r~fs~~~e~~~~ 371 (910)
T KOG1539|consen 298 P-GEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILS-----AKQDRTLRSFSVISESQSQ 371 (910)
T ss_pred C-CCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEe-----cccCcchhhhhhhHHHHhH
Confidence 7 777888877 8888887655332 333444555555555554 33444433 22222
Q ss_pred ---------------------------------------------------CeEEEEEecCCc-c-ceeee--eeeeecc
Q 005140 388 ---------------------------------------------------PARVSLVQIPSK-E-ELRQK--NLFSVSD 412 (712)
Q Consensus 388 ---------------------------------------------------~~~i~~~~~~~~-~-~~~~~--~~~~~~~ 412 (712)
.++.|.|...+. + .+... +......
T Consensus 372 ~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~ 451 (910)
T KOG1539|consen 372 ELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINA 451 (910)
T ss_pred hhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcce
Confidence 122222221111 1 00000 0022334
Q ss_pred eeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEE
Q 005140 413 CKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISF 492 (712)
Q Consensus 413 ~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i 492 (712)
.+++.++.|++.+.+...+. +.+|++...-.....-.-+.|.++|+.++...-++.+++++.+| .+.+
T Consensus 452 ~av~vs~CGNF~~IG~S~G~---------Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~G---ilkf 519 (910)
T KOG1539|consen 452 TAVCVSFCGNFVFIGYSKGT---------IDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADG---ILKF 519 (910)
T ss_pred EEEEEeccCceEEEeccCCe---------EEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcc---eEEE
Confidence 45566788888888777766 78888765322111111257999999999988889999999999 9999
Q ss_pred EEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCE
Q 005140 493 YSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRY 569 (712)
Q Consensus 493 ~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~ 569 (712)
|+..... ++..+. +..+.++..+.....++++.. +-.|.++|..+.+++.. +|...+++++|||||+|
T Consensus 520 w~f~~k~------l~~~l~l~~~~~~iv~hr~s~l~a~~~d---df~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrW 590 (910)
T KOG1539|consen 520 WDFKKKV------LKKSLRLGSSITGIVYHRVSDLLAIALD---DFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRW 590 (910)
T ss_pred EecCCcc------eeeeeccCCCcceeeeeehhhhhhhhcC---ceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcE
Confidence 9996543 555655 557888888888888888887 89999999998888765 78899999999999999
Q ss_pred EEEEEccceeccccEEEEEec-Cceeeeecc-cceeeeEEecCCCCCCChhhH
Q 005140 570 VATAVTSVHEMENGFNIWSFN-GKLLYRTLK-DHFFQFLWRPRPPSFLTPEKE 620 (712)
Q Consensus 570 l~t~s~~~~~~d~~v~iw~~~-g~~~~~~~~-~~i~~~~w~p~~~~l~s~~~d 620 (712)
|++++. |++|++||+- |.++...+. .....+.++|+|.+|+|...|
T Consensus 591 lisasm-----D~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd 638 (910)
T KOG1539|consen 591 LISASM-----DSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVD 638 (910)
T ss_pred EEEeec-----CCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEec
Confidence 999999 9999999986 666665544 678899999999999998766
No 42
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.7e-26 Score=219.80 Aligned_cols=274 Identities=16% Similarity=0.291 Sum_probs=209.4
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc---eeeeccCCCcccccCCCCCcCCCCcCeEEecC
Q 005140 252 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK---VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGG 328 (712)
Q Consensus 252 ~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 328 (712)
|...|..+.||++|+|||+++.| .+..+|.+.... ..+++.+|...+. .+.|||
T Consensus 223 htdEVWfl~FS~nGkyLAsaSkD----------~Taiiw~v~~d~~~kl~~tlvgh~~~V~-------------yi~wSP 279 (519)
T KOG0293|consen 223 HTDEVWFLQFSHNGKYLASASKD----------STAIIWIVVYDVHFKLKKTLVGHSQPVS-------------YIMWSP 279 (519)
T ss_pred CCCcEEEEEEcCCCeeEeeccCC----------ceEEEEEEecCcceeeeeeeecccCceE-------------EEEECC
Confidence 34459999999999999999999 899999875443 4778888888774 699999
Q ss_pred CCCCEEEEec-CCeEEEEEcCCceecccccc-cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeee
Q 005140 329 GKDKYFAKLG-KNMISVYETESFTLIDKKSL-KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKN 406 (712)
Q Consensus 329 ~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 406 (712)
|++|+++++ +..+.+||+.+|........ +.-.+.+.+|.|||..+++ |+.|..+.
T Consensus 280 -DdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~-----Gs~dr~i~---------------- 337 (519)
T KOG0293|consen 280 -DDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVT-----GSPDRTII---------------- 337 (519)
T ss_pred -CCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEe-----cCCCCcEE----------------
Confidence 999999999 88899999999987654432 2345889999999999988 66664433
Q ss_pred eeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCC
Q 005140 407 LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSP 486 (712)
Q Consensus 407 ~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~ 486 (712)
.|..||+.+- -|.-. ....|.+++.++||+++++...|.
T Consensus 338 ---------~wdlDgn~~~------------------~W~gv-------------r~~~v~dlait~Dgk~vl~v~~d~- 376 (519)
T KOG0293|consen 338 ---------MWDLDGNILG------------------NWEGV-------------RDPKVHDLAITYDGKYVLLVTVDK- 376 (519)
T ss_pred ---------EecCCcchhh------------------ccccc-------------ccceeEEEEEcCCCcEEEEEeccc-
Confidence 3455554421 11100 034688899999999999999988
Q ss_pred CCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccc--cceeeEE
Q 005140 487 RPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEH--FMATDVE 562 (712)
Q Consensus 487 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~--~~v~~~~ 562 (712)
.+++|+..+.... .+. -..+++++++.|.||+++++.-. +..+.+||+...+++.. +|. ..+..-+
T Consensus 377 --~i~l~~~e~~~dr----~li-se~~~its~~iS~d~k~~LvnL~---~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSC 446 (519)
T KOG0293|consen 377 --KIRLYNREARVDR----GLI-SEEQPITSFSISKDGKLALVNLQ---DQEIHLWDLEENKLVRKYFGHKQGHFIIRSC 446 (519)
T ss_pred --ceeeechhhhhhh----ccc-cccCceeEEEEcCCCcEEEEEcc---cCeeEEeecchhhHHHHhhcccccceEEEec
Confidence 8999998764321 111 12468999999999999998877 89999999997776654 332 2333445
Q ss_pred ECC-CCCEEEEEEccceeccccEEEEEec-Cceeeee--cccceeeeEEecCC-CCCCChhhHHHHHHH
Q 005140 563 WDP-TGRYVATAVTSVHEMENGFNIWSFN-GKLLYRT--LKDHFFQFLWRPRP-PSFLTPEKEEEIAKN 626 (712)
Q Consensus 563 ~sp-dg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~--~~~~i~~~~w~p~~-~~l~s~~~d~~i~~~ 626 (712)
|-- +..++++|+. |+.|+||+.. |.++... |...+++++|+|.. .+++|+++|++||-|
T Consensus 447 Fgg~~~~fiaSGSE-----D~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIW 510 (519)
T KOG0293|consen 447 FGGGNDKFIASGSE-----DSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIW 510 (519)
T ss_pred cCCCCcceEEecCC-----CceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEe
Confidence 544 4579999999 9999999965 7776655 77899999999965 588899999999854
No 43
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.6e-24 Score=224.42 Aligned_cols=267 Identities=13% Similarity=0.164 Sum_probs=215.2
Q ss_pred hccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee-c
Q 005140 175 WLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-A 252 (712)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~ 252 (712)
.-++| .|.-.+++-..+++-+|+. .-+..+..|..|.++|+.++|+|++.++++|+.|- |+||+.. +.+++.++ .
T Consensus 15 lsFHP-~rPwILtslHsG~IQlWDY-RM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk-~rrclftL~G 91 (1202)
T KOG0292|consen 15 LSFHP-KRPWILTSLHSGVIQLWDY-RMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK-TRRCLFTLLG 91 (1202)
T ss_pred eecCC-CCCEEEEeecCceeeeehh-hhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc-cceehhhhcc
Confidence 33444 3445566777888899999 66777889999999999999999999999999998 8899999 77777776 4
Q ss_pred CCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC
Q 005140 253 HPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 331 (712)
Q Consensus 253 ~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg 331 (712)
|-+ |+.+.|++.-.+|+++|.| .+|+||+..+++++..+++|..-+. |-+|.| ..
T Consensus 92 HlDYVRt~~FHheyPWIlSASDD----------QTIrIWNwqsr~~iavltGHnHYVM-------------cAqFhp-tE 147 (1202)
T KOG0292|consen 92 HLDYVRTVFFHHEYPWILSASDD----------QTIRIWNWQSRKCIAVLTGHNHYVM-------------CAQFHP-TE 147 (1202)
T ss_pred ccceeEEeeccCCCceEEEccCC----------CeEEEEeccCCceEEEEecCceEEE-------------eeccCC-cc
Confidence 555 9999999999999999999 9999999999999999999998774 679999 99
Q ss_pred CEEEEec-CCeEEEEEcCCcee---------------------c--------ccccccccCeeeEEECCCCCeEEEEeec
Q 005140 332 KYFAKLG-KNMISVYETESFTL---------------------I--------DKKSLKVENVMDFSWSPTDPIISLFVPE 381 (712)
Q Consensus 332 ~~la~~~-d~~i~iwd~~~~~~---------------------~--------~~~~~~~~~v~~~~~sp~~~~la~~~~~ 381 (712)
..+++++ |.+|+|||+...+. . .....|..+|+-++|+|.-..|++
T Consensus 148 DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVS---- 223 (1202)
T KOG0292|consen 148 DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVS---- 223 (1202)
T ss_pred ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEe----
Confidence 9999999 99999999863210 0 011235567999999999999999
Q ss_pred CCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecC
Q 005140 382 LGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDN 461 (712)
Q Consensus 382 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~ 461 (712)
|+.|..+++|.|+-..--.+..-..+..+..++-|+|....+++.+.|++ +++|++.....- .++..
T Consensus 224 -G~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDks---------irVwDm~kRt~v---~tfrr 290 (1202)
T KOG0292|consen 224 -GADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKS---------IRVWDMTKRTSV---QTFRR 290 (1202)
T ss_pred -cCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCcc---------EEEEecccccce---eeeec
Confidence 99999999999987654444443444455556678999999999999988 899998765332 22323
Q ss_pred CCCceEEEEEeeCCCEEEEEEcCC
Q 005140 462 KNDKIIAFAWEPKGHRFAVIHGDS 485 (712)
Q Consensus 462 h~~~v~~~~~sp~g~~l~~~~~d~ 485 (712)
-++..+.++-+|..+.||+++..|
T Consensus 291 endRFW~laahP~lNLfAAgHDsG 314 (1202)
T KOG0292|consen 291 ENDRFWILAAHPELNLFAAGHDSG 314 (1202)
T ss_pred cCCeEEEEEecCCcceeeeecCCc
Confidence 367888889999999888887655
No 44
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4.5e-25 Score=199.41 Aligned_cols=282 Identities=16% Similarity=0.250 Sum_probs=225.7
Q ss_pred eeeeccCCCcccccCCCCCcCCCCcCeEEecCCC-CCEEEEec-CCeEEEEEcCCcee-cccc---cccccCeeeEEECC
Q 005140 297 VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK-DKYFAKLG-KNMISVYETESFTL-IDKK---SLKVENVMDFSWSP 370 (712)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d-g~~la~~~-d~~i~iwd~~~~~~-~~~~---~~~~~~v~~~~~sp 370 (712)
.++.+.+|.+.+ | .++|+| . |..||+++ |+.|++|+...+.. ..+. ..|...|.+++|+|
T Consensus 6 ~~~~~~gh~~r~------------W-~~awhp-~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp 71 (312)
T KOG0645|consen 6 LEQKLSGHKDRV------------W-SVAWHP-GKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP 71 (312)
T ss_pred eEEeecCCCCcE------------E-EEEecc-CCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC
Confidence 356677777765 7 599999 6 88999999 99999999884321 1111 13667799999999
Q ss_pred CCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecC
Q 005140 371 TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKER 450 (712)
Q Consensus 371 ~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 450 (712)
.|++|++ ++-|.+..||.-.-...+.+.....+.....+++|+++|.+||+++.+.. +-+|.+.+.
T Consensus 72 ~g~~La~-----aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKS---------VWiWe~ded 137 (312)
T KOG0645|consen 72 HGRYLAS-----ASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKS---------VWIWEIDED 137 (312)
T ss_pred CCcEEEE-----eeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCe---------EEEEEecCC
Confidence 9999999 88888888887666666777777777777778899999999999999987 788888865
Q ss_pred CcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEE
Q 005140 451 DIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIV 528 (712)
Q Consensus 451 ~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~ 528 (712)
+.-...--|.+|...|..+.|+|....|++++.|. +|++|.-.. ...+....++.++ .+.+++|+|.|..|+
T Consensus 138 dEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDn---TIk~~~~~~---dddW~c~~tl~g~~~TVW~~~F~~~G~rl~ 211 (312)
T KOG0645|consen 138 DEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDN---TIKVYRDED---DDDWECVQTLDGHENTVWSLAFDNIGSRLV 211 (312)
T ss_pred CcEEEEeeeccccccccEEEEcCCcceeEEeccCC---eEEEEeecC---CCCeeEEEEecCccceEEEEEecCCCceEE
Confidence 54444445789999999999999999999999999 999998753 2335677888776 689999999999999
Q ss_pred EEeccCCCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCc-------eee---eec
Q 005140 529 LAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK-------LLY---RTL 598 (712)
Q Consensus 529 ~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~-------~~~---~~~ 598 (712)
+++. |++++||-.. .-+...|...+..+.|. ...|++++. |+.|++|..... ++. ..|
T Consensus 212 s~sd---D~tv~Iw~~~--~~~~~~~sr~~Y~v~W~--~~~IaS~gg-----D~~i~lf~~s~~~d~p~~~l~~~~~~aH 279 (312)
T KOG0645|consen 212 SCSD---DGTVSIWRLY--TDLSGMHSRALYDVPWD--NGVIASGGG-----DDAIRLFKESDSPDEPSWNLLAKKEGAH 279 (312)
T ss_pred EecC---CcceEeeeec--cCcchhcccceEeeeec--ccceEeccC-----CCEEEEEEecCCCCCchHHHHHhhhccc
Confidence 9998 9999999755 22344566888999999 457999999 999999976531 222 236
Q ss_pred ccceeeeEEecC-CCCCCChhhHHHHH
Q 005140 599 KDHFFQFLWRPR-PPSFLTPEKEEEIA 624 (712)
Q Consensus 599 ~~~i~~~~w~p~-~~~l~s~~~d~~i~ 624 (712)
...|+++.|.|. +..|+++++|+.++
T Consensus 280 e~dVNsV~w~p~~~~~L~s~~DDG~v~ 306 (312)
T KOG0645|consen 280 EVDVNSVQWNPKVSNRLASGGDDGIVN 306 (312)
T ss_pred ccccceEEEcCCCCCceeecCCCceEE
Confidence 678999999995 67899999998875
No 45
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.94 E-value=2e-25 Score=208.82 Aligned_cols=295 Identities=18% Similarity=0.278 Sum_probs=240.3
Q ss_pred eeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecC
Q 005140 249 MRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGG 328 (712)
Q Consensus 249 ~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 328 (712)
...|..-|.|+++-|...++++|+.| ++|+|||+.+|++..++.+|...+. .+++|+
T Consensus 147 i~gHlgWVr~vavdP~n~wf~tgs~D----------rtikIwDlatg~LkltltGhi~~vr-------------~vavS~ 203 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPGNEWFATGSAD----------RTIKIWDLATGQLKLTLTGHIETVR-------------GVAVSK 203 (460)
T ss_pred hhhccceEEEEeeCCCceeEEecCCC----------ceeEEEEcccCeEEEeecchhheee-------------eeeecc
Confidence 33344459999999999999999999 9999999999999999999987763 589999
Q ss_pred CCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeee
Q 005140 329 GKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL 407 (712)
Q Consensus 329 ~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 407 (712)
-..|+.+++ |+.|+.||+...+.+.....|..+|.+++.+|.-..|++ ++.|..++||. +.++..+.....
T Consensus 204 -rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t-----~grDst~RvWD--iRtr~~V~~l~G 275 (460)
T KOG0285|consen 204 -RHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVT-----GGRDSTIRVWD--IRTRASVHVLSG 275 (460)
T ss_pred -cCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEe-----cCCcceEEEee--ecccceEEEecC
Confidence 889999999 999999999999999988899999999999999999999 77888777655 455555666666
Q ss_pred eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCC
Q 005140 408 FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPR 487 (712)
Q Consensus 408 ~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~ 487 (712)
+.....++.+.|-...+++++.|.+ +++|++..... ...+..|+..|.+++.+|.-..||+++.|.
T Consensus 276 H~~~V~~V~~~~~dpqvit~S~D~t---------vrlWDl~agkt---~~tlt~hkksvral~lhP~e~~fASas~dn-- 341 (460)
T KOG0285|consen 276 HTNPVASVMCQPTDPQVITGSHDST---------VRLWDLRAGKT---MITLTHHKKSVRALCLHPKENLFASASPDN-- 341 (460)
T ss_pred CCCcceeEEeecCCCceEEecCCce---------EEEeeeccCce---eEeeecccceeeEEecCCchhhhhccCCcc--
Confidence 6777777888888888999999988 89999986543 356778999999999999999999988874
Q ss_pred CeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeec----------cc
Q 005140 488 PDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATA----------EH 555 (712)
Q Consensus 488 ~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~----------~~ 555 (712)
++-|++..+. .+..+.++ .+++++.+.|| ++++|+. +|.+.+||..++-..+.. ..
T Consensus 342 --ik~w~~p~g~------f~~nlsgh~~iintl~~nsD~-v~~~G~d---ng~~~fwdwksg~nyQ~~~t~vqpGSl~sE 409 (460)
T KOG0285|consen 342 --IKQWKLPEGE------FLQNLSGHNAIINTLSVNSDG-VLVSGGD---NGSIMFWDWKSGHNYQRGQTIVQPGSLESE 409 (460)
T ss_pred --ceeccCCccc------hhhccccccceeeeeeeccCc-eEEEcCC---ceEEEEEecCcCcccccccccccCCccccc
Confidence 8999996655 34445544 57889998887 6667776 899999999876544321 22
Q ss_pred cceeeEEECCCCCEEEEEEccceeccccEEEEEecCceeeeecccceeeeEEecC
Q 005140 556 FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLKDHFFQFLWRPR 610 (712)
Q Consensus 556 ~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~~~~~i~~~~w~p~ 610 (712)
..|.+.+|+..|..|++|.. |.+|++|.-+.......|. +.|.|.
T Consensus 410 agI~as~fDktg~rlit~ea-----dKtIk~~keDe~aT~EthP-----l~w~P~ 454 (460)
T KOG0285|consen 410 AGIFASCFDKTGSRLITGEA-----DKTIKMYKEDEHATEETHP-----LNWKPE 454 (460)
T ss_pred cceeEEeecccCceEEeccC-----CcceEEEecccccCcccCC-----cCCCCc
Confidence 56889999999999999999 9999999865433222221 677775
No 46
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=6.1e-25 Score=223.32 Aligned_cols=274 Identities=18% Similarity=0.331 Sum_probs=218.6
Q ss_pred ccceEEEcCCCcEEEEEecCceEEeecccCcce--eeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEc
Q 005140 215 TESFVQWSPLGTYLATVHRQGAAVWGGANTFNR--LMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDV 292 (712)
Q Consensus 215 ~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~--~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~ 292 (712)
..+-+.|| ....||.+....|.+|+.. ++.. +..++...|+++.|+++|++|++|..+ |.|.|||.
T Consensus 179 Y~nlldWs-s~n~laValg~~vylW~~~-s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~----------g~v~iwD~ 246 (484)
T KOG0305|consen 179 YLNLLDWS-SANVLAVALGQSVYLWSAS-SGSVTELCSFGEELVTSVKWSPDGSHLAVGTSD----------GTVQIWDV 246 (484)
T ss_pred hhhHhhcc-cCCeEEEEecceEEEEecC-CCceEEeEecCCCceEEEEECCCCCEEEEeecC----------CeEEEEeh
Confidence 34568999 5568999999999999998 5553 344443459999999999999999999 99999999
Q ss_pred cCCceeeeccC-CCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccc-ccccccCeeeEEEC
Q 005140 293 RTGKVMRDFKG-SADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDK-KSLKVENVMDFSWS 369 (712)
Q Consensus 293 ~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s 369 (712)
.+.+.++.+.+ |...+. +++|.. ..+.+++ ++.|..+|+...+.... ...|...|..+.|+
T Consensus 247 ~~~k~~~~~~~~h~~rvg-------------~laW~~---~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws 310 (484)
T KOG0305|consen 247 KEQKKTRTLRGSHASRVG-------------SLAWNS---SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS 310 (484)
T ss_pred hhccccccccCCcCceeE-------------EEeccC---ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC
Confidence 99999999998 655543 788964 6778888 99999999987664444 55677789999999
Q ss_pred CCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEec
Q 005140 370 PTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKE 449 (712)
Q Consensus 370 p~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 449 (712)
+|+.++|. |+.|+.+.||... .
T Consensus 311 ~d~~~lAS-----GgnDN~~~Iwd~~--~--------------------------------------------------- 332 (484)
T KOG0305|consen 311 PDGNQLAS-----GGNDNVVFIWDGL--S--------------------------------------------------- 332 (484)
T ss_pred CCCCeecc-----CCCccceEeccCC--C---------------------------------------------------
Confidence 99999998 6667666655431 0
Q ss_pred CCcceeEEEecCCCCceEEEEEee-CCCEEEEEEc--CCCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCC
Q 005140 450 RDIPIEVLELDNKNDKIIAFAWEP-KGHRFAVIHG--DSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGR 525 (712)
Q Consensus 450 ~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~~~~~--d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~ 525 (712)
+...+.+..|...|.+++|+| ....||+|++ |+ .|+||+..++. .+..+. +.+|..+.|++..+
T Consensus 333 ---~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~---~i~fwn~~~g~------~i~~vdtgsQVcsL~Wsk~~k 400 (484)
T KOG0305|consen 333 ---PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADR---CIKFWNTNTGA------RIDSVDTGSQVCSLIWSKKYK 400 (484)
T ss_pred ---ccccEEEeccceeeeEeeeCCCccCceEEcCCCccc---EEEEEEcCCCc------EecccccCCceeeEEEcCCCC
Confidence 011144557899999999999 5667777766 55 99999998665 555555 55899999999998
Q ss_pred eEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCc
Q 005140 526 FIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK 592 (712)
Q Consensus 526 ~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~ 592 (712)
-|+++. |..++.|.||++.+.+.+.. +|...|.+++|||||.+|++++. |.++++|++-+.
T Consensus 401 Ei~sth-G~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~-----DETlrfw~~f~~ 463 (484)
T KOG0305|consen 401 ELLSTH-GYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAA-----DETLRFWNLFDE 463 (484)
T ss_pred EEEEec-CCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecc-----cCcEEeccccCC
Confidence 877764 44478999999998877764 78899999999999999999999 999999997653
No 47
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=9.6e-25 Score=196.14 Aligned_cols=282 Identities=16% Similarity=0.298 Sum_probs=207.0
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeec--cCCCcccccCCCCCcCCCCcCeEEecCC
Q 005140 252 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDF--KGSADEFAVGGTGGVAGVSWPVFRWGGG 329 (712)
Q Consensus 252 ~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 329 (712)
+...|.+++|+.+|.+|++++.+ +++.+|++..++.+..+ .+|...+. .++|+|.
T Consensus 19 ~~~~v~Sv~wn~~g~~lasgs~d----------ktv~v~n~e~~r~~~~~~~~gh~~svd-------------ql~w~~~ 75 (313)
T KOG1407|consen 19 HVQKVHSVAWNCDGTKLASGSFD----------KTVSVWNLERDRFRKELVYRGHTDSVD-------------QLCWDPK 75 (313)
T ss_pred hhhcceEEEEcccCceeeecccC----------CceEEEEecchhhhhhhcccCCCcchh-------------hheeCCC
Confidence 34459999999999999999999 99999999777554433 44554432 4677774
Q ss_pred CCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeee
Q 005140 330 KDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLF 408 (712)
Q Consensus 330 dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 408 (712)
....|++++ |.+|++||+..++.+.......+. ..+.|+|+|.++++ ++..-.|..++..+.+.+....+
T Consensus 76 ~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~-------~~kdD~it~id~r~~~~~~~~~~- 146 (313)
T KOG1407|consen 76 HPDLFATASGDKTIRIWDIRSGKCTARIETKGEN-INITWSPDGEYIAV-------GNKDDRITFIDARTYKIVNEEQF- 146 (313)
T ss_pred CCcceEEecCCceEEEEEeccCcEEEEeeccCcc-eEEEEcCCCCEEEE-------ecCcccEEEEEecccceeehhcc-
Confidence 556777777 999999999998877655444443 45799999999998 44444566667666554443332
Q ss_pred eecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCC
Q 005140 409 SVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRP 488 (712)
Q Consensus 409 ~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~ 488 (712)
......+.|+.++..++.....+. +.|.....- . ....+.+|.....|+.|+|+|++||+|+.|.
T Consensus 147 ~~e~ne~~w~~~nd~Fflt~GlG~---------v~ILsypsL-k--pv~si~AH~snCicI~f~p~GryfA~GsADA--- 211 (313)
T KOG1407|consen 147 KFEVNEISWNNSNDLFFLTNGLGC---------VEILSYPSL-K--PVQSIKAHPSNCICIEFDPDGRYFATGSADA--- 211 (313)
T ss_pred cceeeeeeecCCCCEEEEecCCce---------EEEEecccc-c--cccccccCCcceEEEEECCCCceEeeccccc---
Confidence 222234578877776666555444 455544421 1 2345778999999999999999999999999
Q ss_pred eEEEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeecc-ccceeeEEECC
Q 005140 489 DISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE-HFMATDVEWDP 565 (712)
Q Consensus 489 ~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~-~~~v~~~~~sp 565 (712)
.+.+||++..- .++.+. .-+|..++||.||++||+|+. |-.|-|-++.+|..+...+ .++...++|+|
T Consensus 212 lvSLWD~~ELi------C~R~isRldwpVRTlSFS~dg~~lASaSE---Dh~IDIA~vetGd~~~eI~~~~~t~tVAWHP 282 (313)
T KOG1407|consen 212 LVSLWDVDELI------CERCISRLDWPVRTLSFSHDGRMLASASE---DHFIDIAEVETGDRVWEIPCEGPTFTVAWHP 282 (313)
T ss_pred eeeccChhHhh------hheeeccccCceEEEEeccCcceeeccCc---cceEEeEecccCCeEEEeeccCCceeEEecC
Confidence 89999996432 444444 338999999999999999998 9999999999999887744 47788999999
Q ss_pred CCCEEEEEEccc----eeccccEEEEEe
Q 005140 566 TGRYVATAVTSV----HEMENGFNIWSF 589 (712)
Q Consensus 566 dg~~l~t~s~~~----~~~d~~v~iw~~ 589 (712)
....||.+..+. .+-.++++||-+
T Consensus 283 k~~LLAyA~ddk~~d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 283 KRPLLAYACDDKDGDSNREAGTVKIFGL 310 (313)
T ss_pred CCceeeEEecCCCCccccccceeEEecC
Confidence 999999998741 112256777654
No 48
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.3e-24 Score=200.38 Aligned_cols=303 Identities=16% Similarity=0.181 Sum_probs=203.5
Q ss_pred ccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCccee-eee-----cCCCeeEEEecCCCCEEEEEcCCCCCCC
Q 005140 207 PVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRL-MRY-----AHPQVKLIDFSPGEKYLVTYSSHEPSNP 279 (712)
Q Consensus 207 ~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~-~~~-----~~~~v~~i~~Spdg~~l~t~s~d~~~~~ 279 (712)
..+++|...|++++||.||++|||++.|+ |+||++. .+... .++ .-...+.+.|+||-+-++......
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~-DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g---- 154 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVR-DFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRG---- 154 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecc-hhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccC----
Confidence 46799999999999999999999999999 8899988 55421 111 222478899999987666554431
Q ss_pred cCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccc
Q 005140 280 RDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSL 358 (712)
Q Consensus 280 ~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~ 358 (712)
..+++|.+...+. ..+..|......-.-.....+..-.+-... +++||++++ |..|.+|++. |+++.....
T Consensus 155 -----~~l~vyk~~K~~d-G~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~idt 226 (420)
T KOG2096|consen 155 -----NKLCVYKLVKKTD-GSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSIDT 226 (420)
T ss_pred -----CEEEEEEeeeccc-CCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cceeeeecc
Confidence 5799998632211 111111000000000000000000234445 788999999 9999999999 777655544
Q ss_pred cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccc
Q 005140 359 KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKST 438 (712)
Q Consensus 359 ~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~ 438 (712)
....-...+.||+|++|++ ++-.-.++||-. .|..+|.+-
T Consensus 227 nq~~n~~aavSP~GRFia~-----~gFTpDVkVwE~---------------------~f~kdG~fq-------------- 266 (420)
T KOG2096|consen 227 NQSSNYDAAVSPDGRFIAV-----SGFTPDVKVWEP---------------------IFTKDGTFQ-------------- 266 (420)
T ss_pred ccccccceeeCCCCcEEEE-----ecCCCCceEEEE---------------------EeccCcchh--------------
Confidence 4455677899999999998 555555555432 345555431
Q ss_pred cccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeeccccc-CceeEEEEeC------
Q 005140 439 YTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHA-GRVSKLTTLK------ 511 (712)
Q Consensus 439 ~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~-~~~~~~~~~~------ 511 (712)
.....++|.+|...|..++|||++.++++.+.|| +++|||.+-.-.. ..-+.++..+
T Consensus 267 -------------ev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG---~wriwdtdVrY~~~qDpk~Lk~g~~pl~aa 330 (420)
T KOG2096|consen 267 -------------EVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG---KWRIWDTDVRYEAGQDPKILKEGSAPLHAA 330 (420)
T ss_pred -------------hhhhhheeccchhheeeeeeCCCcceeEEEecCC---cEEEeeccceEecCCCchHhhcCCcchhhc
Confidence 0112256779999999999999999999999999 9999998521000 0011222221
Q ss_pred CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee---ccccceeeEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 512 GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT---AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 512 ~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~---~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
+..-.-+..||.|+.|+.+. ...|.+|..++++.... .|...|++++|+++|+|+++++. ..+++..
T Consensus 331 g~~p~RL~lsP~g~~lA~s~----gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd------r~vrv~~ 400 (420)
T KOG2096|consen 331 GSEPVRLELSPSGDSLAVSF----GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD------RYVRVIR 400 (420)
T ss_pred CCCceEEEeCCCCcEEEeec----CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc------eeeeeec
Confidence 11223699999999999876 57899999998776554 67899999999999999999986 5666654
No 49
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=3.4e-25 Score=236.41 Aligned_cols=289 Identities=18% Similarity=0.301 Sum_probs=214.4
Q ss_pred CCCcccceEEEcCCCcEEEEEe--cCc-eEEeecccC-----------cceeeee-cCCC-eeEEEecCCCCEEEEEcCC
Q 005140 211 RSYWTESFVQWSPLGTYLATVH--RQG-AAVWGGANT-----------FNRLMRY-AHPQ-VKLIDFSPGEKYLVTYSSH 274 (712)
Q Consensus 211 ~~~~~v~~v~~Spdg~~lat~~--~~~-i~iw~~~~~-----------~~~~~~~-~~~~-v~~i~~Spdg~~l~t~s~d 274 (712)
++...|.+++.+|||..+|||+ .|+ ++||+.+.- .+.+++. .|.+ |.|+.|||||+|||+|+.|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 3445688999999999999999 666 779976510 1112222 2444 9999999999999999999
Q ss_pred CCCCCcCCCccEEEEEEccC------------------CceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEE
Q 005140 275 EPSNPRDANRVVINIFDVRT------------------GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAK 336 (712)
Q Consensus 275 ~~~~~~~~~~~~I~iwd~~~------------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~ 336 (712)
+.|.||.... .+.+..+.+|...+. .++|+| ++.+||+
T Consensus 91 ----------~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~-------------Dv~Wsp-~~~~lvS 146 (942)
T KOG0973|consen 91 ----------RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVL-------------DVNWSP-DDSLLVS 146 (942)
T ss_pred ----------ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccc-------------eeccCC-CccEEEE
Confidence 8999998652 125667788877764 699999 9999999
Q ss_pred ec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeE
Q 005140 337 LG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKM 415 (712)
Q Consensus 337 ~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 415 (712)
++ |++|.||+..++..+.....|..-|..+.|.|-|++||+ -+.|..++||...- .......+
T Consensus 147 ~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~AS-----qsdDrtikvwrt~d--w~i~k~It--------- 210 (942)
T KOG0973|consen 147 VSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFAS-----QSDDRTLKVWRTSD--WGIEKSIT--------- 210 (942)
T ss_pred ecccceEEEEccccceeeeeeecccccccceEECCccCeeee-----ecCCceEEEEEccc--ceeeEeec---------
Confidence 99 999999999999888888889999999999999999999 67888888776211 00000000
Q ss_pred EECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEc-CCCCCeEEEEE
Q 005140 416 YWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDISFYS 494 (712)
Q Consensus 416 ~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~-d~~~~~v~i~d 494 (712)
.|.....+ ...+..+.|||||++|++... .++.+.+.|.+
T Consensus 211 ------------------------------------~pf~~~~~---~T~f~RlSWSPDG~~las~nA~n~~~~~~~Iie 251 (942)
T KOG0973|consen 211 ------------------------------------KPFEESPL---TTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIE 251 (942)
T ss_pred ------------------------------------cchhhCCC---cceeeecccCCCcCeecchhhccCCcceeEEEe
Confidence 00000001 334566889999999998866 55566888877
Q ss_pred eecccccCceeEEEEeCCC--ceeEEEEccC--------C-------C--eEEEEeccCCCceEEEEECCcceeeeeccc
Q 005140 495 MRTAQHAGRVSKLTTLKGK--QANALFWSPS--------G-------R--FIVLAGLKGFNGQLEFYNVDELETMATAEH 555 (712)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~--~v~~l~~spd--------g-------~--~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~ 555 (712)
..+-+ .-..+-+| ++.++.|+|. | . .+|+|+. |+.|.||.....+.+...|+
T Consensus 252 R~tWk------~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSq---DrSlSVW~T~~~RPl~vi~~ 322 (942)
T KOG0973|consen 252 RGTWK------VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQ---DRSLSVWNTALPRPLFVIHN 322 (942)
T ss_pred cCCce------eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecC---CccEEEEecCCCCchhhhhh
Confidence 63322 23334344 7899999882 1 1 3445555 99999999987777766544
Q ss_pred ---cceeeEEECCCCCEEEEEEccceeccccEEEEEecCc
Q 005140 556 ---FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK 592 (712)
Q Consensus 556 ---~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~ 592 (712)
..|.+++|||||..|+.+|. ||+|.+..+..+
T Consensus 323 lf~~SI~DmsWspdG~~LfacS~-----DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 323 LFNKSIVDMSWSPDGFSLFACSL-----DGTVALIHFEEK 357 (942)
T ss_pred hhcCceeeeeEcCCCCeEEEEec-----CCeEEEEEcchH
Confidence 78999999999999999999 999999998743
No 50
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=1.3e-25 Score=218.51 Aligned_cols=285 Identities=14% Similarity=0.265 Sum_probs=218.5
Q ss_pred CCCCCCccchhhccCCCCCc----------eEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEec
Q 005140 164 KPYTPGENLQKWLTDEKARD----------QFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHR 233 (712)
Q Consensus 164 ~~~~~~~~l~~~~~~~~~~~----------~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~ 233 (712)
.-|.|+.+.+.|-.+++|-. .++..+-|+.+.+|+.-....+++.|.+|..+|..++||++|+.+.+++-
T Consensus 199 rc~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sf 278 (503)
T KOG0282|consen 199 RCYLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASF 278 (503)
T ss_pred eeeccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeec
Confidence 44556677777777776543 34445557888899986678899999999999999999999999999999
Q ss_pred Cc-eEEeecccCcceeeeecCCC-eeEEEecCCC-CEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCccccc
Q 005140 234 QG-AAVWGGANTFNRLMRYAHPQ-VKLIDFSPGE-KYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAV 310 (712)
Q Consensus 234 ~~-i~iw~~~~~~~~~~~~~~~~-v~~i~~Spdg-~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~ 310 (712)
|+ +++||.+ +++.+.+|+... +.|+.|+||+ +.+++|+.+ +.|+.||+++|+.++.+..|.+.+.
T Consensus 279 D~~lKlwDtE-TG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd----------~ki~~wDiRs~kvvqeYd~hLg~i~- 346 (503)
T KOG0282|consen 279 DRFLKLWDTE-TGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSD----------KKIRQWDIRSGKVVQEYDRHLGAIL- 346 (503)
T ss_pred ceeeeeeccc-cceEEEEEecCCCceeeecCCCCCcEEEEecCC----------CcEEEEeccchHHHHHHHhhhhhee-
Confidence 99 8899999 999999998776 8999999999 788889999 9999999999999999988877653
Q ss_pred CCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccccc-ccccCeeeEEECCCCCeEEEEeecCCCCCCC
Q 005140 311 GGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKS-LKVENVMDFSWSPTDPIISLFVPELGGGNQP 388 (712)
Q Consensus 311 ~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~ 388 (712)
.+.|-+ +|+++++.+ +++++||+......+.... ...-...++..+|.+++++. -+.++
T Consensus 347 ------------~i~F~~-~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~a-----Qs~dN- 407 (503)
T KOG0282|consen 347 ------------DITFVD-EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAA-----QSMDN- 407 (503)
T ss_pred ------------eeEEcc-CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehh-----hccCc-
Confidence 789999 999999999 9999999988665443221 12223567888999888886 22222
Q ss_pred eEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCC--CCce
Q 005140 389 ARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNK--NDKI 466 (712)
Q Consensus 389 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h--~~~v 466 (712)
+|.++.+.. .|.+..+ ..+.+| .+.-
T Consensus 408 -~i~ifs~~~---------------------------------------------~~r~nkk------K~feGh~vaGys 435 (503)
T KOG0282|consen 408 -YIAIFSTVP---------------------------------------------PFRLNKK------KRFEGHSVAGYS 435 (503)
T ss_pred -eEEEEeccc---------------------------------------------ccccCHh------hhhcceeccCce
Confidence 333332111 1111110 112233 3556
Q ss_pred EEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCC-CeEEEEeccCCCceEEEEE
Q 005140 467 IAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSG-RFIVLAGLKGFNGQLEFYN 543 (712)
Q Consensus 467 ~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg-~~l~~~~~~~~dg~v~iwd 543 (712)
..+.|||||.+|++|..+| .+.+||.++.. .+..+..| ++..+.|+|.. ..+|+++. +|.|++|+
T Consensus 436 ~~v~fSpDG~~l~SGdsdG---~v~~wdwkt~k------l~~~lkah~~~ci~v~wHP~e~Skvat~~w---~G~Ikiwd 503 (503)
T KOG0282|consen 436 CQVDFSPDGRTLCSGDSDG---KVNFWDWKTTK------LVSKLKAHDQPCIGVDWHPVEPSKVATCGW---DGLIKIWD 503 (503)
T ss_pred eeEEEcCCCCeEEeecCCc---cEEEeechhhh------hhhccccCCcceEEEEecCCCcceeEeccc---CceeEecC
Confidence 6789999999999999999 99999997644 55555544 78999999965 56788888 99999996
No 51
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=1.3e-24 Score=219.93 Aligned_cols=233 Identities=13% Similarity=0.207 Sum_probs=178.0
Q ss_pred CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECc---CCCEEEEEEcccccccccc
Q 005140 362 NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS---SGDYLAVKVDRYTKTKKST 438 (712)
Q Consensus 362 ~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~---~g~~l~~~~~~~~~~~~~~ 438 (712)
++.+++.||+|++||. +|..+.+.+|++.+.+.+.....+...+.++.++. ..+.||.++.+..
T Consensus 461 G~R~~~vSp~gqhLAs-------GDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRl------ 527 (1080)
T KOG1408|consen 461 GFRALAVSPDGQHLAS-------GDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRL------ 527 (1080)
T ss_pred ceEEEEECCCcceecc-------cCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCce------
Confidence 4889999999999998 77777777888877776666666777777776664 2356777776655
Q ss_pred cccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCC--CEEEEEEcCCCCCeEEEEEeecccccCce--eEEEEeCCCc
Q 005140 439 YTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG--HRFAVIHGDSPRPDISFYSMRTAQHAGRV--SKLTTLKGKQ 514 (712)
Q Consensus 439 ~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g--~~l~~~~~d~~~~~v~i~d~~~~~~~~~~--~~~~~~~~~~ 514 (712)
+.+|++...-.+ ..++.+|...|+++.|.-+| ..+++++.|. .| .|+........++ ....++....
T Consensus 528 ---IHV~Dv~rny~l--~qtld~HSssITsvKFa~~gln~~MiscGADk---si-mFr~~qk~~~g~~f~r~t~t~~ktT 598 (1080)
T KOG1408|consen 528 ---IHVYDVKRNYDL--VQTLDGHSSSITSVKFACNGLNRKMISCGADK---SI-MFRVNQKASSGRLFPRHTQTLSKTT 598 (1080)
T ss_pred ---EEEEecccccch--hhhhcccccceeEEEEeecCCceEEEeccCch---hh-heehhccccCceeccccccccccce
Confidence 677777543222 24577899999999999887 6777777776 33 4444332221111 1122233346
Q ss_pred eeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee-----ccccceeeEEECCCCCEEEEEEccceeccccEEEEEe
Q 005140 515 ANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-----AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSF 589 (712)
Q Consensus 515 v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~-----~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~ 589 (712)
+..++..|..+++++++. |..|+||++.++++..+ .|.+....+..+|.|-|||++.. |.++.++|+
T Consensus 599 lYDm~Vdp~~k~v~t~cQ---Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScs-----dktl~~~Df 670 (1080)
T KOG1408|consen 599 LYDMAVDPTSKLVVTVCQ---DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCS-----DKTLCFVDF 670 (1080)
T ss_pred EEEeeeCCCcceEEEEec---ccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeec-----CCceEEEEe
Confidence 788999999999999998 99999999999998875 34477889999999999999999 999999998
Q ss_pred c-Cceeeee--cccceeeeEEecCCCCCCChhhHHHHH
Q 005140 590 N-GKLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 590 ~-g~~~~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
. |+++.+. |.+.|+.+.|.+|.+.|++.+.|+.|.
T Consensus 671 ~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIF 708 (1080)
T KOG1408|consen 671 VSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIF 708 (1080)
T ss_pred ccchhhhhhcCcchheeeeeecccchhheeecCCceEE
Confidence 6 6776654 778999999999999999999999875
No 52
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=1.2e-25 Score=207.27 Aligned_cols=274 Identities=16% Similarity=0.222 Sum_probs=217.4
Q ss_pred CcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee----------cCCCeeEEEecCCCCEEEEEcCCCCCCCcC
Q 005140 213 YWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY----------AHPQVKLIDFSPGEKYLVTYSSHEPSNPRD 281 (712)
Q Consensus 213 ~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~----------~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~ 281 (712)
...+.|..|||||+||++|+-|| |-+|+.. +++....+ ....|.|+.||.|...||+|+.|
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~-~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqD------- 284 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYT-TGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQD------- 284 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhc-cchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcC-------
Confidence 45577899999999999999999 6799987 55543322 23359999999999999999999
Q ss_pred CCccEEEEEEccCCceeeecc-CCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccccccc
Q 005140 282 ANRVVINIFDVRTGKVMRDFK-GSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLK 359 (712)
Q Consensus 282 ~~~~~I~iwd~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~ 359 (712)
|.|+||.+.+|.+++.|. .|...++ +++||. |+..+.+++ |.+++|.-+.+|+.+.....|
T Consensus 285 ---GkIKvWri~tG~ClRrFdrAHtkGvt-------------~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGH 347 (508)
T KOG0275|consen 285 ---GKIKVWRIETGQCLRRFDRAHTKGVT-------------CLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGH 347 (508)
T ss_pred ---CcEEEEEEecchHHHHhhhhhccCee-------------EEEEcc-CcchhhcccccceEEEeccccchhHHHhcCc
Confidence 999999999999999997 5665553 899999 999999888 999999999999999988899
Q ss_pred ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccccc
Q 005140 360 VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTY 439 (712)
Q Consensus 360 ~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~ 439 (712)
..-|+...|+++|+++++ ++.|++++||... +...+.. |.|-
T Consensus 348 sSyvn~a~ft~dG~~iis-----aSsDgtvkvW~~K--tteC~~T------------fk~~------------------- 389 (508)
T KOG0275|consen 348 SSYVNEATFTDDGHHIIS-----ASSDGTVKVWHGK--TTECLST------------FKPL------------------- 389 (508)
T ss_pred cccccceEEcCCCCeEEE-----ecCCccEEEecCc--chhhhhh------------ccCC-------------------
Confidence 999999999999999999 8888888876432 1111111 1111
Q ss_pred ccEEEEEEecCCcceeEEEecCCCCceEEEEEee-CCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-----CC
Q 005140 440 TGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-----GK 513 (712)
Q Consensus 440 ~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-----~~ 513 (712)
+...+|+++..-| +-..++++.... +|.|.++... .+.++. ++
T Consensus 390 ---------------------~~d~~vnsv~~~PKnpeh~iVCNrsn---tv~imn~qGQ-------vVrsfsSGkREgG 438 (508)
T KOG0275|consen 390 ---------------------GTDYPVNSVILLPKNPEHFIVCNRSN---TVYIMNMQGQ-------VVRSFSSGKREGG 438 (508)
T ss_pred ---------------------CCcccceeEEEcCCCCceEEEEcCCC---eEEEEeccce-------EEeeeccCCccCC
Confidence 1134555555555 345677776666 8889888432 455554 23
Q ss_pred ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 514 QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 514 ~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
..-+.+.||.|.++++.+. |+.++.|...+|++-.+ .|...+..++-+|....||+.+. |+.+++|.
T Consensus 439 dFi~~~lSpkGewiYcigE---D~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsE-----DgllKLWk 507 (508)
T KOG0275|consen 439 DFINAILSPKGEWIYCIGE---DGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSE-----DGLLKLWK 507 (508)
T ss_pred ceEEEEecCCCcEEEEEcc---CcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcc-----cchhhhcC
Confidence 4567789999999999998 99999999998887665 56678889999999999999999 99999995
No 53
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.94 E-value=6.4e-25 Score=226.55 Aligned_cols=201 Identities=14% Similarity=0.258 Sum_probs=173.8
Q ss_pred cccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCc
Q 005140 208 VYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANR 284 (712)
Q Consensus 208 ~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~ 284 (712)
.+-+|.++|..+.|||+.++|++++.|+ +++|.+. +...+..+. |. .|.++.|+|-|-|+||++.|
T Consensus 446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~-t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D---------- 514 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLD-TWSCLVIYKGHLAPVWDVQFAPRGYYFATASHD---------- 514 (707)
T ss_pred EeecCCCceeeeeecccccceeeccCCcceeeeecc-cceeEEEecCCCcceeeEEecCCceEEEecCCC----------
Confidence 3678999999999999999999999998 8999999 777666553 44 49999999999999999999
Q ss_pred cEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCe
Q 005140 285 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENV 363 (712)
Q Consensus 285 ~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v 363 (712)
++.++|......++|.|.+|...+. |+.|.| +..|+|+++ |.++++||+.+|..+.....|...|
T Consensus 515 ~tArLWs~d~~~PlRifaghlsDV~-------------cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V 580 (707)
T KOG0263|consen 515 QTARLWSTDHNKPLRIFAGHLSDVD-------------CVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPV 580 (707)
T ss_pred ceeeeeecccCCchhhhcccccccc-------------eEEECC-cccccccCCCCceEEEEEcCCCcEEEEecCCCCce
Confidence 9999999999999999999988874 799999 999999999 9999999999999998889999999
Q ss_pred eeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEE
Q 005140 364 MDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFE 443 (712)
Q Consensus 364 ~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 443 (712)
.+++|||+|++|++ |+.++.+.|| +++....+
T Consensus 581 ~al~~Sp~Gr~LaS-----g~ed~~I~iW--Dl~~~~~v----------------------------------------- 612 (707)
T KOG0263|consen 581 TALAFSPCGRYLAS-----GDEDGLIKIW--DLANGSLV----------------------------------------- 612 (707)
T ss_pred EEEEEcCCCceEee-----cccCCcEEEE--EcCCCcch-----------------------------------------
Confidence 99999999999998 6566555544 33322111
Q ss_pred EEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeec
Q 005140 444 LFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRT 497 (712)
Q Consensus 444 l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~ 497 (712)
..+.+|.+.|.++.||.+|..||+++.|. +|++||+..
T Consensus 613 -------------~~l~~Ht~ti~SlsFS~dg~vLasgg~Dn---sV~lWD~~~ 650 (707)
T KOG0263|consen 613 -------------KQLKGHTGTIYSLSFSRDGNVLASGGADN---SVRLWDLTK 650 (707)
T ss_pred -------------hhhhcccCceeEEEEecCCCEEEecCCCC---eEEEEEchh
Confidence 23457888999999999999999999998 899999864
No 54
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.94 E-value=2.5e-24 Score=197.42 Aligned_cols=291 Identities=14% Similarity=0.163 Sum_probs=227.8
Q ss_pred CCCCCCCCCccchhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEe
Q 005140 161 PEHKPYTPGENLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVW 239 (712)
Q Consensus 161 p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw 239 (712)
|....+...+.+....++|+| ..|+.+..|..+++||.....+-...+++|...|..+.|++||..|++++.|. ++.|
T Consensus 39 p~m~l~gh~geI~~~~F~P~g-s~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDG-SCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred hhhhcCCCcceEEEEEECCCC-CeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 333444445677788888954 47788888899999997555556667889999999999999999999999999 8899
Q ss_pred ecccCcceeeeec-CCC-eeEEEecCCCCEE-EEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCc
Q 005140 240 GGANTFNRLMRYA-HPQ-VKLIDFSPGEKYL-VTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGV 316 (712)
Q Consensus 240 ~~~~~~~~~~~~~-~~~-v~~i~~Spdg~~l-~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~ 316 (712)
|.. +++++.++. |.. |.++.-+.-|..| .+++.| ++++|||+++...++++.......
T Consensus 118 D~~-tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD----------~t~kl~D~R~k~~~~t~~~kyqlt-------- 178 (338)
T KOG0265|consen 118 DAE-TGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDD----------GTLKLWDIRKKEAIKTFENKYQLT-------- 178 (338)
T ss_pred ecc-cceeeehhccccceeeecCccccCCeEEEecCCC----------ceEEEEeecccchhhccccceeEE--------
Confidence 999 899888874 555 7888755556554 566666 999999999999988886665544
Q ss_pred CCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEe
Q 005140 317 AGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQ 395 (712)
Q Consensus 317 ~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~ 395 (712)
++.|.. .+..+.+++ |+.|++||+.....+.....|.+.|..++.+|+|.++.+ .+.+..+++|.+.
T Consensus 179 ------Av~f~d-~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~lls-----nsMd~tvrvwd~r 246 (338)
T KOG0265|consen 179 ------AVGFKD-TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLS-----NSMDNTVRVWDVR 246 (338)
T ss_pred ------EEEecc-cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCcccc-----ccccceEEEEEec
Confidence 789998 888888888 999999999988888888899999999999999999998 6677777777654
Q ss_pred cCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCC
Q 005140 396 IPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG 475 (712)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g 475 (712)
. |.|.-+.+.+.... . ..+ .......+|||++
T Consensus 247 p--------------------~~p~~R~v~if~g~------------------~-------hnf---eknlL~cswsp~~ 278 (338)
T KOG0265|consen 247 P--------------------FAPSQRCVKIFQGH------------------I-------HNF---EKNLLKCSWSPNG 278 (338)
T ss_pred c--------------------cCCCCceEEEeecc------------------h-------hhh---hhhcceeeccCCC
Confidence 2 44544433221110 0 001 2233457999999
Q ss_pred CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEE
Q 005140 476 HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYN 543 (712)
Q Consensus 476 ~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd 543 (712)
.++.+++.|. .+++||..... .+..+++| .|+++.|+|...+|.+++. |.+|++=.
T Consensus 279 ~~i~ags~dr---~vyvwd~~~r~------~lyklpGh~gsvn~~~Fhp~e~iils~~s---dk~i~lge 336 (338)
T KOG0265|consen 279 TKITAGSADR---FVYVWDTTSRR------ILYKLPGHYGSVNEVDFHPTEPIILSCSS---DKTIYLGE 336 (338)
T ss_pred Cccccccccc---eEEEeeccccc------EEEEcCCcceeEEEeeecCCCcEEEEecc---CceeEeec
Confidence 9999999999 99999985533 67788877 6999999999999999998 88887643
No 55
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3e-24 Score=189.93 Aligned_cols=268 Identities=13% Similarity=0.227 Sum_probs=216.6
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC
Q 005140 252 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 331 (712)
Q Consensus 252 ~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg 331 (712)
+...|..+.|+-||+|.++++.| .+|++|+...|.+++++.+|...+. ..+.+. |+
T Consensus 16 ~qgaV~avryN~dGnY~ltcGsd----------rtvrLWNp~rg~liktYsghG~EVl-------------D~~~s~-Dn 71 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDGNYCLTCGSD----------RTVRLWNPLRGALIKTYSGHGHEVL-------------DAALSS-DN 71 (307)
T ss_pred cccceEEEEEccCCCEEEEcCCC----------ceEEeecccccceeeeecCCCceee-------------eccccc-cc
Confidence 44559999999999999999999 9999999999999999999988773 466677 88
Q ss_pred CEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeee
Q 005140 332 KYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV 410 (712)
Q Consensus 332 ~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 410 (712)
..|++++ |..+.+||+.+|+.+.+...|...|+.+.|+.+...+++ |+-|...++|.....+.+++....
T Consensus 72 skf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~S-----gsfD~s~r~wDCRS~s~ePiQild---- 142 (307)
T KOG0316|consen 72 SKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVAS-----GSFDSSVRLWDCRSRSFEPIQILD---- 142 (307)
T ss_pred cccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEe-----ccccceeEEEEcccCCCCccchhh----
Confidence 8888887 999999999999999999999999999999999999998 778888777765443333222111
Q ss_pred cceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeE
Q 005140 411 SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDI 490 (712)
Q Consensus 411 ~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v 490 (712)
...+.|.++.. .+..|+.++.|| ++
T Consensus 143 --------------------------------------------------ea~D~V~Si~v--~~heIvaGS~DG---tv 167 (307)
T KOG0316|consen 143 --------------------------------------------------EAKDGVSSIDV--AEHEIVAGSVDG---TV 167 (307)
T ss_pred --------------------------------------------------hhcCceeEEEe--cccEEEeeccCC---cE
Confidence 11455656555 467899999999 99
Q ss_pred EEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccc--eeeEEECCC
Q 005140 491 SFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFM--ATDVEWDPT 566 (712)
Q Consensus 491 ~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~--v~~~~~spd 566 (712)
+.||++.+. .....-+++|++++||+||+..+.++. +++|++.|-.+|+++.. +|... -.+++++..
T Consensus 168 RtydiR~G~------l~sDy~g~pit~vs~s~d~nc~La~~l---~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qs 238 (307)
T KOG0316|consen 168 RTYDIRKGT------LSSDYFGHPITSVSFSKDGNCSLASSL---DSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQS 238 (307)
T ss_pred EEEEeecce------eehhhcCCcceeEEecCCCCEEEEeec---cceeeecccchhHHHHHhcccccceeeeeeeeccc
Confidence 999998765 445556889999999999999999998 99999999999999876 44433 346778888
Q ss_pred CCEEEEEEccceeccccEEEEEec-Cceeeeec--cc-ceeeeEEecCCCCCCChhhHH
Q 005140 567 GRYVATAVTSVHEMENGFNIWSFN-GKLLYRTL--KD-HFFQFLWRPRPPSFLTPEKEE 621 (712)
Q Consensus 567 g~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~~--~~-~i~~~~w~p~~~~l~s~~~d~ 621 (712)
...+++|+. ||.+++|++. +.++.+.. .. .+.++.++|.-..++++...+
T Consensus 239 dthV~sgSE-----DG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~ 292 (307)
T KOG0316|consen 239 DTHVFSGSE-----DGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHG 292 (307)
T ss_pred ceeEEeccC-----CceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCc
Confidence 889999999 9999999986 45555442 23 378999999988888776544
No 56
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2e-24 Score=223.73 Aligned_cols=308 Identities=15% Similarity=0.205 Sum_probs=242.2
Q ss_pred ccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee-cCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCcc
Q 005140 209 YKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-AHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRV 285 (712)
Q Consensus 209 ~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~ 285 (712)
|......|..++|+|.-.++.++...| |.+||.. -+..+.+| .|.+ |+.++|+|++.++++|+.| .
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYR-M~tli~rFdeHdGpVRgv~FH~~qplFVSGGDD----------y 73 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYR-MGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDD----------Y 73 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhh-hhhHHhhhhccCCccceeeecCCCCeEEecCCc----------c
Confidence 344456788899999999999999999 7799998 77788888 4665 9999999999999999999 8
Q ss_pred EEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCee
Q 005140 286 VINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVM 364 (712)
Q Consensus 286 ~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~ 364 (712)
.|+||+..+.+++-++.+|.+-+. .+.|++ .=-.|.+++ |.+|+||+..+.+.+.....|..-|.
T Consensus 74 kIkVWnYk~rrclftL~GHlDYVR-------------t~~FHh-eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVM 139 (1202)
T KOG0292|consen 74 KIKVWNYKTRRCLFTLLGHLDYVR-------------TVFFHH-EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVM 139 (1202)
T ss_pred EEEEEecccceehhhhccccceeE-------------EeeccC-CCceEEEccCCCeEEEEeccCCceEEEEecCceEEE
Confidence 999999999999999999988774 578888 888999999 99999999999999999999999999
Q ss_pred eEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEE
Q 005140 365 DFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFEL 444 (712)
Q Consensus 365 ~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l 444 (712)
|..|+|....+++ +|-|++++||....-..+......+. - ...|..+ + ..+
T Consensus 140 cAqFhptEDlIVS-----aSLDQTVRVWDisGLRkk~~~pg~~e----~----~~~~~~~-----~-----------~dL 190 (1202)
T KOG0292|consen 140 CAQFHPTEDLIVS-----ASLDQTVRVWDISGLRKKNKAPGSLE----D----QMRGQQG-----N-----------SDL 190 (1202)
T ss_pred eeccCCccceEEE-----ecccceEEEEeecchhccCCCCCCch----h----hhhcccc-----c-----------hhh
Confidence 9999999999998 88999999988765333221111000 0 0011110 0 001
Q ss_pred EEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEcc
Q 005140 445 FRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSP 522 (712)
Q Consensus 445 ~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~sp 522 (712)
+- ..-.+-...+.||...|+-++|+|.-..|++|+.|. .|++|.+...+. -.+.+..+| .|+++.|+|
T Consensus 191 fg---~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDR---qVKlWrmnetKa----WEvDtcrgH~nnVssvlfhp 260 (1202)
T KOG0292|consen 191 FG---QTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDR---QVKLWRMNETKA----WEVDTCRGHYNNVSSVLFHP 260 (1202)
T ss_pred cC---CcCeeeeeeecccccccceEEecCCcceEEecCCcc---eeeEEEeccccc----eeehhhhcccCCcceEEecC
Confidence 10 001112244679999999999999999999999999 999999964332 134455555 799999999
Q ss_pred CCCeEEEEeccCCCceEEEEECCcceeeeec--cccceeeEEECCCCCEEEEEEccceeccccEEEEEe
Q 005140 523 SGRFIVLAGLKGFNGQLEFYNVDELETMATA--EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSF 589 (712)
Q Consensus 523 dg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~--~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~ 589 (712)
....+++.+. |+.|++||+...+.+.+. .+...+.++-+|....+|.|.. +++.+|.+
T Consensus 261 ~q~lIlSnsE---DksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHD------sGm~VFkl 320 (1202)
T KOG0292|consen 261 HQDLILSNSE---DKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHD------SGMIVFKL 320 (1202)
T ss_pred ccceeEecCC---CccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecC------CceEEEEE
Confidence 9999999998 999999999988777765 6678889999999988877764 45555544
No 57
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.93 E-value=4.3e-24 Score=192.58 Aligned_cols=287 Identities=13% Similarity=0.189 Sum_probs=224.2
Q ss_pred cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCC
Q 005140 252 AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK 330 (712)
Q Consensus 252 ~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d 330 (712)
.|. .++.+.++.+|..|.+++.| .++.||-..+|+.+-++.+|.+.+ | ++...- +
T Consensus 8 GHERplTqiKyN~eGDLlFscaKD----------~~~~vw~s~nGerlGty~GHtGav------------W-~~Did~-~ 63 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCAKD----------STPTVWYSLNGERLGTYDGHTGAV------------W-CCDIDW-D 63 (327)
T ss_pred cCccccceEEecCCCcEEEEecCC----------CCceEEEecCCceeeeecCCCceE------------E-EEEecC-C
Confidence 354 49999999999999999999 889999988999999999999987 8 577777 8
Q ss_pred CCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCC-------ccce
Q 005140 331 DKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS-------KEEL 402 (712)
Q Consensus 331 g~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~-------~~~~ 402 (712)
.+++++++ |.++++||+++|+.+...... ..|..+.|+++|+++++..... .+.+..|.+++++. ..++
T Consensus 64 s~~liTGSAD~t~kLWDv~tGk~la~~k~~-~~Vk~~~F~~~gn~~l~~tD~~--mg~~~~v~~fdi~~~~~~~~s~ep~ 140 (327)
T KOG0643|consen 64 SKHLITGSADQTAKLWDVETGKQLATWKTN-SPVKRVDFSFGGNLILASTDKQ--MGYTCFVSVFDIRDDSSDIDSEEPY 140 (327)
T ss_pred cceeeeccccceeEEEEcCCCcEEEEeecC-CeeEEEeeccCCcEEEEEehhh--cCcceEEEEEEccCChhhhcccCce
Confidence 89999999 999999999999988655332 3489999999999998866555 56677788888763 2334
Q ss_pred eeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEE
Q 005140 403 RQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIH 482 (712)
Q Consensus 403 ~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~ 482 (712)
..............|+|-+++|+++..++. +..|+++.....+... ..|...|++++++||..+|++++
T Consensus 141 ~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~---------is~~da~~g~~~v~s~--~~h~~~Ind~q~s~d~T~FiT~s 209 (327)
T KOG0643|consen 141 LKIPTPDSKITSALWGPLGETIIAGHEDGS---------ISIYDARTGKELVDSD--EEHSSKINDLQFSRDRTYFITGS 209 (327)
T ss_pred EEecCCccceeeeeecccCCEEEEecCCCc---------EEEEEcccCceeeech--hhhccccccccccCCcceEEecc
Confidence 444444555667789999999999999887 7888887643333222 34788999999999999999999
Q ss_pred cCCCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEE------------EEECCccee
Q 005140 483 GDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLE------------FYNVDELET 549 (712)
Q Consensus 483 ~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~------------iwd~~~~~~ 549 (712)
.|. +-++||+.+-. .++++. ..|+++.+++|-..+++.++..+ ...|. +|++-..+.
T Consensus 210 ~Dt---takl~D~~tl~------v~Kty~te~PvN~aaisP~~d~VilgGGqe-A~dVTTT~~r~GKFEArFyh~i~eEE 279 (327)
T KOG0643|consen 210 KDT---TAKLVDVRTLE------VLKTYTTERPVNTAAISPLLDHVILGGGQE-AMDVTTTSTRAGKFEARFYHLIFEEE 279 (327)
T ss_pred cCc---cceeeecccee------eEEEeeecccccceecccccceEEecCCce-eeeeeeecccccchhhhHHHHHHHHH
Confidence 999 88999997643 566665 45899999999988888876421 11121 122111122
Q ss_pred ee--eccccceeeEEECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 550 MA--TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 550 ~~--~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
+. ++|-++|++++|+|+|+-.++|+. ||.|+|..+..
T Consensus 280 igrvkGHFGPINsvAfhPdGksYsSGGE-----DG~VR~h~Fd~ 318 (327)
T KOG0643|consen 280 IGRVKGHFGPINSVAFHPDGKSYSSGGE-----DGYVRLHHFDS 318 (327)
T ss_pred hccccccccCcceeEECCCCcccccCCC-----CceEEEEEecc
Confidence 22 367799999999999999999999 99999987764
No 58
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=9.2e-25 Score=233.17 Aligned_cols=279 Identities=19% Similarity=0.328 Sum_probs=196.9
Q ss_pred cCCCCCceEEEEE--CCeeEEEecCCCC-----------CCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecc
Q 005140 177 TDEKARDQFVIRS--GTDTEVLWNDARH-----------LKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGA 242 (712)
Q Consensus 177 ~~~~~~~~~~~~~--~~~~~~~w~~~~~-----------~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~ 242 (712)
.+|+|. .|+.+. .|+.+++|+...- .+.......|..+|+|+.|||||+|||+|+.|+ |.||...
T Consensus 21 v~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~ 99 (942)
T KOG0973|consen 21 VHPDGV-KFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERA 99 (942)
T ss_pred ecCCce-eEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeec
Confidence 344443 344444 4666779986321 122234467999999999999999999999999 5699765
Q ss_pred c-----------------Ccceeeee-cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccC
Q 005140 243 N-----------------TFNRLMRY-AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKG 303 (712)
Q Consensus 243 ~-----------------~~~~~~~~-~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~ 303 (712)
. .++.+..+ .|. .|..++|||++.+||+++.| ++|.||+..+.+.++.+.+
T Consensus 100 ~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~D----------nsViiwn~~tF~~~~vl~~ 169 (942)
T KOG0973|consen 100 EIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLD----------NSVIIWNAKTFELLKVLRG 169 (942)
T ss_pred ccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEeccc----------ceEEEEccccceeeeeeec
Confidence 1 11122333 344 59999999999999999999 9999999999999999999
Q ss_pred CCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccccccccc------CeeeEEECCCCCeEE
Q 005140 304 SADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVE------NVMDFSWSPTDPIIS 376 (712)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~------~v~~~~~sp~~~~la 376 (712)
|...+ . -+.|.| -|+|||+.+ |++|+||.+.+.........+.. -+.-++|||||.+|+
T Consensus 170 H~s~V--------K-----Gvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~la 235 (942)
T KOG0973|consen 170 HQSLV--------K-----GVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLA 235 (942)
T ss_pred ccccc--------c-----ceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeec
Confidence 98765 3 378999 999999999 99999999887655443322222 266778888888888
Q ss_pred EEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeE
Q 005140 377 LFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEV 456 (712)
Q Consensus 377 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 456 (712)
+. .+- + .+...+....++ -|.. .
T Consensus 236 s~-----nA~-------------------------------n-~~~~~~~IieR~------------tWk~--------~ 258 (942)
T KOG0973|consen 236 SP-----NAV-------------------------------N-GGKSTIAIIERG------------TWKV--------D 258 (942)
T ss_pred ch-----hhc-------------------------------c-CCcceeEEEecC------------Ccee--------e
Confidence 62 110 0 111111111111 1111 1
Q ss_pred EEecCCCCceEEEEEeeC-----CC------------EEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEE
Q 005140 457 LELDNKNDKIIAFAWEPK-----GH------------RFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALF 519 (712)
Q Consensus 457 ~~l~~h~~~v~~~~~sp~-----g~------------~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~ 519 (712)
..|-+|..++.++.|+|. .+ .+|+|+.|+ +|.||...... .+-.++.+.++.|..++
T Consensus 259 ~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDr---SlSVW~T~~~R---Pl~vi~~lf~~SI~Dms 332 (942)
T KOG0973|consen 259 KDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDR---SLSVWNTALPR---PLFVIHNLFNKSIVDMS 332 (942)
T ss_pred eeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCc---cEEEEecCCCC---chhhhhhhhcCceeeee
Confidence 446689999999999872 11 466777788 99999974322 12233445577899999
Q ss_pred EccCCCeEEEEeccCCCceEEEEECCc
Q 005140 520 WSPSGRFIVLAGLKGFNGQLEFYNVDE 546 (712)
Q Consensus 520 ~spdg~~l~~~~~~~~dg~v~iwd~~~ 546 (712)
|||||..|+.++. ||+|.++.++.
T Consensus 333 WspdG~~LfacS~---DGtV~~i~Fee 356 (942)
T KOG0973|consen 333 WSPDGFSLFACSL---DGTVALIHFEE 356 (942)
T ss_pred EcCCCCeEEEEec---CCeEEEEEcch
Confidence 9999999999999 99999999874
No 59
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.93 E-value=6.8e-24 Score=214.29 Aligned_cols=270 Identities=19% Similarity=0.365 Sum_probs=211.2
Q ss_pred CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCC
Q 005140 253 HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK 332 (712)
Q Consensus 253 ~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~ 332 (712)
...|.+++|+|++++|++++.+ +.|++|++.+++....+..|...+. .+.|++ +++
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~~----------g~i~i~~~~~~~~~~~~~~~~~~i~-------------~~~~~~-~~~ 64 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSGD----------GTIKVWDLETGELLRTLKGHTGPVR-------------DVAASA-DGT 64 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeecC----------cEEEEEEeeCCCcEEEEecCCccee-------------EEEECC-CCC
Confidence 3459999999999999999998 9999999998888888877765542 589999 999
Q ss_pred EEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeec
Q 005140 333 YFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVS 411 (712)
Q Consensus 333 ~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 411 (712)
++++++ ++.|.+|++.+++.+.....+...+.++.|+|++.++++ ++.++. +.+|++.+.+
T Consensus 65 ~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~--i~~~~~~~~~----------- 126 (289)
T cd00200 65 YLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSS-----SSRDKT--IKVWDVETGK----------- 126 (289)
T ss_pred EEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEE-----ecCCCe--EEEEECCCcE-----------
Confidence 999988 999999999987666555556667899999998877776 333443 3333332110
Q ss_pred ceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEE
Q 005140 412 DCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDIS 491 (712)
Q Consensus 412 ~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~ 491 (712)
....+..|...+.+++|+|++.++++++.++ .|.
T Consensus 127 -------------------------------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~---~i~ 160 (289)
T cd00200 127 -------------------------------------------CLTTLRGHTDWVNSVAFSPDGTFVASSSQDG---TIK 160 (289)
T ss_pred -------------------------------------------EEEEeccCCCcEEEEEEcCcCCEEEEEcCCC---cEE
Confidence 0012225678899999999988888887678 899
Q ss_pred EEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCC
Q 005140 492 FYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTG 567 (712)
Q Consensus 492 i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg 567 (712)
+|+++++. .+..+. ...+.++.|+|+++.+++++. ++.|.+||+..++.+.. .+...+.++.|+|++
T Consensus 161 i~d~~~~~------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 231 (289)
T cd00200 161 LWDLRTGK------CVATLTGHTGEVNSVAFSPDGEKLLSSSS---DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDG 231 (289)
T ss_pred EEEccccc------cceeEecCccccceEEECCCcCEEEEecC---CCcEEEEECCCCceecchhhcCCceEEEEEcCCC
Confidence 99997544 233333 336899999999999999987 99999999998777665 455689999999999
Q ss_pred CEEEEEEccceeccccEEEEEec-Cceeeee--cccceeeeEEecCCCCCCChhhHHHHH
Q 005140 568 RYVATAVTSVHEMENGFNIWSFN-GKLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 568 ~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
.++++++. ++.+++|++. +..+... +...+.++.|+|++..|++++.++.++
T Consensus 232 ~~~~~~~~-----~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 286 (289)
T cd00200 232 YLLASGSE-----DGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIR 286 (289)
T ss_pred cEEEEEcC-----CCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEE
Confidence 99999987 8999999987 4444333 556899999999999999998887653
No 60
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=1.5e-24 Score=212.25 Aligned_cols=301 Identities=14% Similarity=0.205 Sum_probs=206.5
Q ss_pred CCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcc-e------eeeecCCCeeEEEecCCCCEEEEEcCC
Q 005140 203 LKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN-R------LMRYAHPQVKLIDFSPGEKYLVTYSSH 274 (712)
Q Consensus 203 ~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~-~------~~~~~~~~v~~i~~Spdg~~l~t~s~d 274 (712)
...+..+++|+..|+.+++-|.|..|++|+-|. |++||.. ... . +.-.....|.+++|||.|..|++.+..
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~-gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQ-GMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS 235 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecc-cccccchhhhccCcccccccceeeecCCCCeEEEEecC
Confidence 445667899999999999999999999999998 8899987 332 1 111123349999999999988888877
Q ss_pred CCCCCcCCCccEEEEEEccCCceeeecc-CCCcccccCCC-CCcCCCCcCeEEecCCCCC-EEEEec-CCeEEEEEcCCc
Q 005140 275 EPSNPRDANRVVINIFDVRTGKVMRDFK-GSADEFAVGGT-GGVAGVSWPVFRWGGGKDK-YFAKLG-KNMISVYETESF 350 (712)
Q Consensus 275 ~~~~~~~~~~~~I~iwd~~~g~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~s~~dg~-~la~~~-d~~i~iwd~~~~ 350 (712)
.+.+|+| +.|..+..+. +.........+ +++..+. +.+|.| +.+ .|.+++ |++++||++.
T Consensus 236 ----------aqakl~D-RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt--~g~whP-~~k~~FlT~s~DgtlRiWdv~-- 299 (641)
T KOG0772|consen 236 ----------AQAKLLD-RDGFEIVEFSKGDQYIRDMYNTKGHIAELT--CGCWHP-DNKEEFLTCSYDGTLRIWDVN-- 299 (641)
T ss_pred ----------cceeEEc-cCCceeeeeeccchhhhhhhccCCceeeee--cccccc-CcccceEEecCCCcEEEEecC--
Confidence 7899999 4665433321 11100000000 0011111 345555 332 333333 5555555554
Q ss_pred eecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc--ceeee--eeeeecceeEEECcCCCEEEE
Q 005140 351 TLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE--ELRQK--NLFSVSDCKMYWQSSGDYLAV 426 (712)
Q Consensus 351 ~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~--~~~~~~~~~~~~s~~g~~l~~ 426 (712)
....+ .+..+ ....+....++|+++|+.||.
T Consensus 300 ---------------------------------------------~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAa 334 (641)
T KOG0772|consen 300 ---------------------------------------------NTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAA 334 (641)
T ss_pred ---------------------------------------------CchhheeEEeeccCCCcccCceeeecCCCcchhhh
Confidence 22111 11111 112344555689999999999
Q ss_pred EEcccccccccccccEEEEEEecCCcceeEEEecCCCC--ceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCce
Q 005140 427 KVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKND--KIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRV 504 (712)
Q Consensus 427 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~--~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~ 504 (712)
+..++. +++|+............-.+|.. .|+|++||++|++|++-+.|. ++++||++..+.
T Consensus 335 gc~DGS---------IQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~---tLKvWDLrq~kk---- 398 (641)
T KOG0772|consen 335 GCLDGS---------IQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDD---TLKVWDLRQFKK---- 398 (641)
T ss_pred cccCCc---------eeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCC---ceeeeecccccc----
Confidence 999988 89999765443333333347777 899999999999999999999 999999987553
Q ss_pred eEEEEeC----CCceeEEEEccCCCeEEEEeccC---CCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEc
Q 005140 505 SKLTTLK----GKQANALFWSPSGRFIVLAGLKG---FNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 505 ~~~~~~~----~~~v~~l~~spdg~~l~~~~~~~---~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~ 575 (712)
++.... ..+-+.++|||+.+.|++|.... ..|.|+|||..+...+.. .....|..+.|+|.=..|..++.
T Consensus 399 -pL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsg 477 (641)
T KOG0772|consen 399 -PLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSG 477 (641)
T ss_pred -chhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecC
Confidence 333322 22567899999999999986422 357899999999888876 34577889999999889999999
Q ss_pred cceeccccEEEE
Q 005140 576 SVHEMENGFNIW 587 (712)
Q Consensus 576 ~~~~~d~~v~iw 587 (712)
||+++||
T Consensus 478 -----dG~~~vy 484 (641)
T KOG0772|consen 478 -----DGTAHVY 484 (641)
T ss_pred -----CCceEEE
Confidence 8999886
No 61
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=6.4e-23 Score=190.32 Aligned_cols=286 Identities=14% Similarity=0.255 Sum_probs=212.2
Q ss_pred CCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCC--CeeEEEecCCCCEEEEEcCCCCCCC
Q 005140 203 LKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHP--QVKLIDFSPGEKYLVTYSSHEPSNP 279 (712)
Q Consensus 203 ~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~--~v~~i~~Spdg~~l~t~s~d~~~~~ 279 (712)
.++...|..-...++++.||++|.+|++++.|. ++|||.. ++.++.++.+. ++..+.|......++.++..
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~-~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk----- 77 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSL-SGKQVKTINSKKYGVDLACFTHHSNTVIHSSTK----- 77 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcC-CCceeeEeecccccccEEEEecCCceEEEccCC-----
Confidence 344455555667899999999999999988775 8899999 88988888765 69999998888877777762
Q ss_pred cCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccc
Q 005140 280 RDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSL 358 (712)
Q Consensus 280 ~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~ 358 (712)
.+.+|+..++.+.+.+|.|.||...+. .++.+| -+..+.+++ |++|++||++..+.... +
T Consensus 78 ---~d~tIryLsl~dNkylRYF~GH~~~V~-------------sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~--l 138 (311)
T KOG1446|consen 78 ---EDDTIRYLSLHDNKYLRYFPGHKKRVN-------------SLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGL--L 138 (311)
T ss_pred ---CCCceEEEEeecCceEEEcCCCCceEE-------------EEEecC-CCCeEEecccCCeEEeeEecCCCCceE--E
Confidence 016899999999999999999999875 789999 788888888 99999999985544322 2
Q ss_pred cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccc
Q 005140 359 KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKST 438 (712)
Q Consensus 359 ~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~ 438 (712)
+..+-...+|.|.|-++|+ +.+.. .|.+|++
T Consensus 139 ~~~~~pi~AfDp~GLifA~-----~~~~~--~IkLyD~------------------------------------------ 169 (311)
T KOG1446|consen 139 NLSGRPIAAFDPEGLIFAL-----ANGSE--LIKLYDL------------------------------------------ 169 (311)
T ss_pred ecCCCcceeECCCCcEEEE-----ecCCC--eEEEEEe------------------------------------------
Confidence 3333445677777777776 22222 4444443
Q ss_pred cccEEEEEEecC-CcceeEEEec-CCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCc--
Q 005140 439 YTGFELFRIKER-DIPIEVLELD-NKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQ-- 514 (712)
Q Consensus 439 ~~~~~l~~l~~~-~~~~~~~~l~-~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~-- 514 (712)
+.- ..|...+.+. +-....+.+.|||||++++.+...+ .+++.|.-+|. .+.++..++
T Consensus 170 ---------Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s---~~~~lDAf~G~------~~~tfs~~~~~ 231 (311)
T KOG1446|consen 170 ---------RSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS---FIYLLDAFDGT------VKSTFSGYPNA 231 (311)
T ss_pred ---------cccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC---cEEEEEccCCc------EeeeEeeccCC
Confidence 321 2233333332 2245678899999999999999888 78888875554 444444331
Q ss_pred ---eeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--c-cccceeeEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 515 ---ANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--A-EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 515 ---v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~-~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
--..+|+|||+++++++. ||+|.+|+++++..+.. + +.+.++++.|+|.-..+++++. .+.+|-
T Consensus 232 ~~~~~~a~ftPds~Fvl~gs~---dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s-------~l~fw~ 301 (311)
T KOG1446|consen 232 GNLPLSATFTPDSKFVLSGSD---DGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS-------NLVFWL 301 (311)
T ss_pred CCcceeEEECCCCcEEEEecC---CCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc-------eEEEEe
Confidence 246889999999999998 99999999999988775 3 4578899999997666666655 677775
Q ss_pred ec
Q 005140 589 FN 590 (712)
Q Consensus 589 ~~ 590 (712)
..
T Consensus 302 p~ 303 (311)
T KOG1446|consen 302 PD 303 (311)
T ss_pred cc
Confidence 44
No 62
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.93 E-value=2.4e-23 Score=203.29 Aligned_cols=416 Identities=13% Similarity=0.174 Sum_probs=276.5
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCCccCCceEEEEEeecccccccCCCCCCCCCCCCCCCCCccchhhccCCCCCceEE
Q 005140 107 KSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFDDFDKFMKVPDEWAPPEHKPYTPGENLQKWLTDEKARDQFV 186 (712)
Q Consensus 107 ~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~ 186 (712)
..+|.+-|.|+........+.. .-...|.+.|..|..-.+...+...-.. +...-++|... .++
T Consensus 153 f~~GV~~vaFsk~~~G~~l~~v----D~s~~h~lSVWdWqk~~~~~~vk~sne~-----------v~~a~FHPtd~-nli 216 (626)
T KOG2106|consen 153 FDRGVTCVAFSKINGGSLLCAV----DDSNPHMLSVWDWQKKAKLGPVKTSNEV-----------VFLATFHPTDP-NLI 216 (626)
T ss_pred ccccceeeeecccCCCceEEEe----cCCCccccchhhchhhhccCcceeccce-----------EEEEEeccCCC-cEE
Confidence 4567777777653222111110 1113477888888777776655433221 11222334333 568
Q ss_pred EEECCeeEEEecCCCCCC---Cccccc-CCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee-cCC-CeeEE
Q 005140 187 IRSGTDTEVLWNDARHLK---PEPVYK-RSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-AHP-QVKLI 259 (712)
Q Consensus 187 ~~~~~~~~~~w~~~~~~~---~~~~~~-~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~~-~v~~i 259 (712)
+++|.+...+|... .+. ....|. +....|.|++|.++|. ++||..+| |.||+.. +.+...+. .|+ +|.++
T Consensus 217 it~Gk~H~~Fw~~~-~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~-~~~~~k~~~aH~ggv~~L 293 (626)
T KOG2106|consen 217 ITCGKGHLYFWTLR-GGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKG-TNRISKQVHAHDGGVFSL 293 (626)
T ss_pred EEeCCceEEEEEcc-CCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCC-CceEEeEeeecCCceEEE
Confidence 99999999999763 322 222333 3447899999999997 56888888 7799987 44433332 455 49999
Q ss_pred EecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeec------------cCCCcccccCCC--------------
Q 005140 260 DFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDF------------KGSADEFAVGGT-------------- 313 (712)
Q Consensus 260 ~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~------------~~~~~~~~~~~~-------------- 313 (712)
+.-.+|..| +|+.| ..|..|| ..-+.++.. ........+|.+
T Consensus 294 ~~lr~Gtll-SGgKD----------Rki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~ 361 (626)
T KOG2106|consen 294 CMLRDGTLL-SGGKD----------RKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFT 361 (626)
T ss_pred EEecCccEe-ecCcc----------ceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCce
Confidence 999999855 59999 8999998 232222211 111111111100
Q ss_pred ----CCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCC
Q 005140 314 ----GGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQP 388 (712)
Q Consensus 314 ----~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~ 388 (712)
+... -.|. ++-.| +...+++++ |+.+++|+ ..+++..+ .-...+.++.|+|.| .+|+ +...
T Consensus 362 ~~v~gh~d-elwg-la~hp-s~~q~~T~gqdk~v~lW~--~~k~~wt~-~~~d~~~~~~fhpsg-~va~-------Gt~~ 427 (626)
T KOG2106|consen 362 LTVQGHGD-ELWG-LATHP-SKNQLLTCGQDKHVRLWN--DHKLEWTK-IIEDPAECADFHPSG-VVAV-------GTAT 427 (626)
T ss_pred EEEEeccc-ceee-EEcCC-ChhheeeccCcceEEEcc--CCceeEEE-EecCceeEeeccCcc-eEEE-------eecc
Confidence 0011 2364 77788 888888888 99999999 44555444 334568999999999 7777 5566
Q ss_pred eEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEE
Q 005140 389 ARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIA 468 (712)
Q Consensus 389 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~ 468 (712)
++..+++..+...+..+.- ......+.|+|+|.+||+++.++. +.+|.++..+........ .|..+|+.
T Consensus 428 G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~---------iyiy~Vs~~g~~y~r~~k-~~gs~ith 496 (626)
T KOG2106|consen 428 GRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNH---------IYIYRVSANGRKYSRVGK-CSGSPITH 496 (626)
T ss_pred ceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCe---------EEEEEECCCCcEEEEeee-ecCceeEE
Confidence 6777888877655555544 555666789999999999999987 899999988776554443 34489999
Q ss_pred EEEeeCCCEEEEEEcCCCCCeEEEEEeecccccC----------ceeE-EEEeC---CCceeEEEEccCCCeEEEEeccC
Q 005140 469 FAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAG----------RVSK-LTTLK---GKQANALFWSPSGRFIVLAGLKG 534 (712)
Q Consensus 469 ~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~----------~~~~-~~~~~---~~~v~~l~~spdg~~l~~~~~~~ 534 (712)
+.||+|+++|.+.+.|- .|-+|......... +|.. ...+. +..++.++-|.+.+.+++|..
T Consensus 497 LDwS~Ds~~~~~~S~d~---eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd-- 571 (626)
T KOG2106|consen 497 LDWSSDSQFLVSNSGDY---EILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDD-- 571 (626)
T ss_pred eeecCCCceEEeccCce---EEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhcccc--
Confidence 99999999999999988 89999432211100 0110 01111 223566777888889999887
Q ss_pred CCceEEEEECCccee-----eeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEe
Q 005140 535 FNGQLEFYNVDELET-----MATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSF 589 (712)
Q Consensus 535 ~dg~v~iwd~~~~~~-----~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~ 589 (712)
.|.|++|...-.+. ....|.+.+++++|+-+...+++.+. |.++..|++
T Consensus 572 -~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~-----D~Si~qW~l 625 (626)
T KOG2106|consen 572 -FGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGK-----DTSIMQWRL 625 (626)
T ss_pred -CceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCC-----CceEEEEEe
Confidence 89999998763222 23477789999999998888888887 999999986
No 63
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=9e-24 Score=225.01 Aligned_cols=276 Identities=17% Similarity=0.215 Sum_probs=217.4
Q ss_pred chhhccCCCCCceEEEEECCeeEEEecCCCCCC--CcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCccee
Q 005140 172 LQKWLTDEKARDQFVIRSGTDTEVLWNDARHLK--PEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRL 248 (712)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~ 248 (712)
...+-+.++|+- ++....++.+.+|+. .... ....+.+|...|+.++|||+|++|++++.|+ ++||++...+..+
T Consensus 162 v~~~~fs~~g~~-l~~~~~~~~i~~~~~-~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~ 239 (456)
T KOG0266|consen 162 VTCVDFSPDGRA-LAAASSDGLIRIWKL-EGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNL 239 (456)
T ss_pred eEEEEEcCCCCe-EEEccCCCcEEEeec-ccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEE
Confidence 444667788886 677778999999998 3444 6667789999999999999999999999999 8899995255666
Q ss_pred eee-cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEe
Q 005140 249 MRY-AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRW 326 (712)
Q Consensus 249 ~~~-~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (712)
..+ .|. .|++++|+|+|+.|++|+.| ++|+|||+.++++++.+.+|...++ .++|
T Consensus 240 ~~l~gH~~~v~~~~f~p~g~~i~Sgs~D----------~tvriWd~~~~~~~~~l~~hs~~is-------------~~~f 296 (456)
T KOG0266|consen 240 KTLKGHSTYVTSVAFSPDGNLLVSGSDD----------GTVRIWDVRTGECVRKLKGHSDGIS-------------GLAF 296 (456)
T ss_pred EEecCCCCceEEEEecCCCCEEEEecCC----------CcEEEEeccCCeEEEeeeccCCceE-------------EEEE
Confidence 655 455 49999999999999999999 9999999999999999999998774 7899
Q ss_pred cCCCCCEEEEec-CCeEEEEEcCCcee--ccccccccc--CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccc
Q 005140 327 GGGKDKYFAKLG-KNMISVYETESFTL--IDKKSLKVE--NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE 401 (712)
Q Consensus 327 s~~dg~~la~~~-d~~i~iwd~~~~~~--~~~~~~~~~--~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~ 401 (712)
++ ++.+|++++ |+.|+|||+.++.. +.....+.. .+..+.|+|++.+|++ ++.++.+++|.+. ....
T Consensus 297 ~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~-----~~~d~~~~~w~l~--~~~~ 368 (456)
T KOG0266|consen 297 SP-DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLS-----ASLDRTLKLWDLR--SGKS 368 (456)
T ss_pred CC-CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEE-----ecCCCeEEEEEcc--CCcc
Confidence 99 999999999 99999999998883 232222222 5899999999999999 7777777766655 3332
Q ss_pred eeeeeeeee---cceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCC-CCceEEEEEeeCCCE
Q 005140 402 LRQKNLFSV---SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNK-NDKIIAFAWEPKGHR 477 (712)
Q Consensus 402 ~~~~~~~~~---~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h-~~~v~~~~~sp~g~~ 477 (712)
+.....+.. .......++.|.+++++..+.. +.+|++...... ..+.+| ...+..++|+|...+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~---------v~~~~~~s~~~~---~~l~~h~~~~~~~~~~~~~~~~ 436 (456)
T KOG0266|consen 369 VGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGS---------VYVWDSSSGGIL---QRLEGHSKAAVSDLSSHPTENL 436 (456)
T ss_pred eeeecccCCcceeEecccccCCCCeEEEEeCCce---------EEEEeCCccchh---hhhcCCCCCceeccccCCCcCe
Confidence 222222222 1222344789999999999887 889988763322 346678 889999999999999
Q ss_pred EEEEE--cCCCCCeEEEEEe
Q 005140 478 FAVIH--GDSPRPDISFYSM 495 (712)
Q Consensus 478 l~~~~--~d~~~~~v~i~d~ 495 (712)
+++.+ .|+ .+++|..
T Consensus 437 ~~s~s~~~d~---~~~~w~~ 453 (456)
T KOG0266|consen 437 IASSSFEGDG---LIRLWKY 453 (456)
T ss_pred eeecCcCCCc---eEEEecC
Confidence 99998 456 8999975
No 64
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.93 E-value=1.2e-24 Score=193.97 Aligned_cols=279 Identities=14% Similarity=0.244 Sum_probs=225.3
Q ss_pred cccccCCCcccceEEEcC---CCcEEEEEecCc-eEEeecccCcceeeee-cCCC-eeEEEecCCCCEEEEEcCCCCCCC
Q 005140 206 EPVYKRSYWTESFVQWSP---LGTYLATVHRQG-AAVWGGANTFNRLMRY-AHPQ-VKLIDFSPGEKYLVTYSSHEPSNP 279 (712)
Q Consensus 206 ~~~~~~~~~~v~~v~~Sp---dg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~~~-v~~i~~Spdg~~l~t~s~d~~~~~ 279 (712)
-....+|..+|-.++||| +|-+|++++.|+ -.+-+.+ ++.-+.+| .|.+ |.+.++..+-...|+++.|
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~-tgdwigtfeghkgavw~~~l~~na~~aasaaad----- 80 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGD-TGDWIGTFEGHKGAVWSATLNKNATRAASAAAD----- 80 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCC-CCCcEEeeeccCcceeeeecCchhhhhhhhccc-----
Confidence 345689999999999995 899999999999 4578888 88888888 3555 9999999999999999999
Q ss_pred cCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceec-cccc
Q 005140 280 RDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLI-DKKS 357 (712)
Q Consensus 280 ~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~-~~~~ 357 (712)
-+-+|||.-+|..+.+|....... .++|+. |.++|.+++ +.-++||+++.-+.- ....
T Consensus 81 -----ftakvw~a~tgdelhsf~hkhivk--------------~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ 140 (334)
T KOG0278|consen 81 -----FTAKVWDAVTGDELHSFEHKHIVK--------------AVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEIS 140 (334)
T ss_pred -----chhhhhhhhhhhhhhhhhhhheee--------------eEEecc-cchhhhccchHHHhhhhhccCCCCCchhhc
Confidence 889999999999999997654433 689999 999999999 999999999865432 2344
Q ss_pred ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccc
Q 005140 358 LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKS 437 (712)
Q Consensus 358 ~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~ 437 (712)
.|..+|..+.|...++.|++ +..++.+|+|.
T Consensus 141 ghtg~Ir~v~wc~eD~~iLS-----Sadd~tVRLWD-------------------------------------------- 171 (334)
T KOG0278|consen 141 GHTGGIRTVLWCHEDKCILS-----SADDKTVRLWD-------------------------------------------- 171 (334)
T ss_pred CCCCcceeEEEeccCceEEe-----eccCCceEEEE--------------------------------------------
Confidence 67778988888888777776 44555555443
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-CCcee
Q 005140 438 TYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQAN 516 (712)
Q Consensus 438 ~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~ 516 (712)
.+.. ..+..+.+ +.+|+++..+++|++|.++.+. .|.+||..+-. +++... ...|.
T Consensus 172 ---------~rTg-t~v~sL~~---~s~VtSlEvs~dG~ilTia~gs----sV~Fwdaksf~------~lKs~k~P~nV~ 228 (334)
T KOG0278|consen 172 ---------HRTG-TEVQSLEF---NSPVTSLEVSQDGRILTIAYGS----SVKFWDAKSFG------LLKSYKMPCNVE 228 (334)
T ss_pred ---------eccC-cEEEEEec---CCCCcceeeccCCCEEEEecCc----eeEEecccccc------ceeeccCccccc
Confidence 2221 12233445 7889999999999988877664 69999996533 666655 33688
Q ss_pred EEEEccCCCeEEEEeccCCCceEEEEECCcceeee---eccccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 517 ALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA---TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 517 ~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~---~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
+.+.+|+-..+++|+. |+.++.||..+++.+. ++|.++|.++.|||||...|+|+. ||+|+||...
T Consensus 229 SASL~P~k~~fVaGge---d~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSE-----DGTirlWQt~ 297 (334)
T KOG0278|consen 229 SASLHPKKEFFVAGGE---DFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSE-----DGTIRLWQTT 297 (334)
T ss_pred cccccCCCceEEecCc---ceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCC-----CceEEEEEec
Confidence 9999999999999888 9999999999887764 478899999999999999999999 9999999876
No 65
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.2e-23 Score=205.36 Aligned_cols=277 Identities=14% Similarity=0.194 Sum_probs=221.3
Q ss_pred CCCcccceEEEcCCCcE-EEEEecCceEEeecccCcceeeeec--CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEE
Q 005140 211 RSYWTESFVQWSPLGTY-LATVHRQGAAVWGGANTFNRLMRYA--HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVI 287 (712)
Q Consensus 211 ~~~~~v~~v~~Spdg~~-lat~~~~~i~iw~~~~~~~~~~~~~--~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I 287 (712)
....+|++++|||...+ +|+++.-++.||+.. +.....++. ...|.+++|-.||+.||.|... |.|
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~-~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~s----------G~V 92 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSV-TRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDES----------GHV 92 (487)
T ss_pred cccCcceeEecCCCCCCceEEecccEEEEEecc-hhhhhhhHHhhccceeEEEeecCCeEEEccCCc----------CcE
Confidence 34468999999996554 888888899999998 666666553 3459999999999999999998 999
Q ss_pred EEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeE
Q 005140 288 NIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDF 366 (712)
Q Consensus 288 ~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 366 (712)
+|||..+...++.+..|..++. .+.|+|.+++.|++++ |+.+++||+.+.........|.+.|.+.
T Consensus 93 ~vfD~k~r~iLR~~~ah~apv~-------------~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g 159 (487)
T KOG0310|consen 93 KVFDMKSRVILRQLYAHQAPVH-------------VTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCG 159 (487)
T ss_pred EEeccccHHHHHHHhhccCcee-------------EEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEee
Confidence 9999877778999999988763 6889995666778888 8889999999888755667788899999
Q ss_pred EECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEE
Q 005140 367 SWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFR 446 (712)
Q Consensus 367 ~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~ 446 (712)
+|+|...++++. ||.|+.+++|..
T Consensus 160 ~~~~~~~hivvt----GsYDg~vrl~Dt---------------------------------------------------- 183 (487)
T KOG0310|consen 160 DISPANDHIVVT----GSYDGKVRLWDT---------------------------------------------------- 183 (487)
T ss_pred ccccCCCeEEEe----cCCCceEEEEEe----------------------------------------------------
Confidence 999986655442 666666655443
Q ss_pred EecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCC
Q 005140 447 IKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSG 524 (712)
Q Consensus 447 l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg 524 (712)
+..+ ....++ .|..+|.++.+-|.|..||++++. .|++||+-++.. .+..+. ...|+|+++..++
T Consensus 184 -R~~~--~~v~el-nhg~pVe~vl~lpsgs~iasAgGn----~vkVWDl~~G~q-----ll~~~~~H~KtVTcL~l~s~~ 250 (487)
T KOG0310|consen 184 -RSLT--SRVVEL-NHGCPVESVLALPSGSLIASAGGN----SVKVWDLTTGGQ-----LLTSMFNHNKTVTCLRLASDS 250 (487)
T ss_pred -ccCC--ceeEEe-cCCCceeeEEEcCCCCEEEEcCCC----eEEEEEecCCce-----ehhhhhcccceEEEEEeecCC
Confidence 2221 112344 678999999999999999998874 699999976543 343333 3479999999999
Q ss_pred CeEEEEeccCCCceEEEEECCcceeeeec-cccceeeEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 525 RFIVLAGLKGFNGQLEFYNVDELETMATA-EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 525 ~~l~~~~~~~~dg~v~iwd~~~~~~~~~~-~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
..|++++. |+.+++||+.+.+.+... -.++|.+++.||+++.++.|-. +|.+.+-+
T Consensus 251 ~rLlS~sL---D~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGms-----nGlv~~rr 307 (487)
T KOG0310|consen 251 TRLLSGSL---DRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMS-----NGLVSIRR 307 (487)
T ss_pred ceEeeccc---ccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecc-----cceeeeeh
Confidence 99999999 999999999999998874 4488999999999999999998 77766653
No 66
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=5.5e-23 Score=208.41 Aligned_cols=388 Identities=12% Similarity=0.224 Sum_probs=257.1
Q ss_pred CeeEEEecCCCCCCCcccccCCCcccceEEEcCCCc---EEEEEecCc-eEEeecc-cCcceeeeecCCCeeEEEecCCC
Q 005140 191 TDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGT---YLATVHRQG-AAVWGGA-NTFNRLMRYAHPQVKLIDFSPGE 265 (712)
Q Consensus 191 ~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~---~lat~~~~~-i~iw~~~-~~~~~~~~~~~~~v~~i~~Spdg 265 (712)
...+.+|+. .+......+.+|...|+|+.|-|+.+ ++++|+.|+ |++|.+. .....+..+++-.+.+++++..-
T Consensus 33 ~~~Iav~dp-~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~ 111 (764)
T KOG1063|consen 33 GPAIAVADP-EKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARS 111 (764)
T ss_pred CceEEEeCc-ccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeee
Confidence 344557776 33345567899999999999999988 899999999 8899887 23334444544345556655433
Q ss_pred CEEEEEcCCCCCCCcCCCccEEEEEEccCCc-------------------------------------------------
Q 005140 266 KYLVTYSSHEPSNPRDANRVVINIFDVRTGK------------------------------------------------- 296 (712)
Q Consensus 266 ~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~------------------------------------------------- 296 (712)
......+.+ +++.+||.+..+
T Consensus 112 ~~~~~~~ad----------~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f 181 (764)
T KOG1063|consen 112 SVMTCKAAD----------GTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSF 181 (764)
T ss_pred eEEEeeccC----------ceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcce
Confidence 333222444 677777762222
Q ss_pred -eeeeccCCCcccccCCCCCcCCCCcCeEEecCC--CCCEEEEec-CCeEEEEEcCCcee--------------------
Q 005140 297 -VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGG--KDKYFAKLG-KNMISVYETESFTL-------------------- 352 (712)
Q Consensus 297 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--dg~~la~~~-d~~i~iwd~~~~~~-------------------- 352 (712)
.+..+.+|.+-+ + .++|... +.-+||+++ |..|+||.+.-+..
T Consensus 182 ~~v~el~GH~DWI--------r-----sl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~ 248 (764)
T KOG1063|consen 182 ARVAELEGHTDWI--------R-----SLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFM 248 (764)
T ss_pred eEEEEeeccchhh--------h-----hhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceee
Confidence 122223333322 2 3444431 345788888 99999998752220
Q ss_pred -ccc----------ccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeec-----ceeEE
Q 005140 353 -IDK----------KSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVS-----DCKMY 416 (712)
Q Consensus 353 -~~~----------~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~ 416 (712)
+.. ...|.+-|.++.|+|.+..|++ ++.|.+..||.-+-.++--+....+.... -....
T Consensus 249 ~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLS-----ASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~l 323 (764)
T KOG1063|consen 249 ILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLS-----ASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGL 323 (764)
T ss_pred eeeeEEEEEehhhhhcCcccceEEEEEccchhhhee-----cccCcceEEEecCCccceEEEEEEeecccccccceeeEE
Confidence 001 1134455999999999977777 88999988887776655433333332222 23447
Q ss_pred ECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEE---
Q 005140 417 WQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFY--- 493 (712)
Q Consensus 417 ~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~--- 493 (712)
|+|++..++..+.. +.+++|...++..=.....+.||.+.|.+++|+|.|.+|.+++.|. +-++|
T Consensus 324 w~~n~~~ii~~g~~---------Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQ---TTRlFa~w 391 (764)
T KOG1063|consen 324 WSPNSNVIIAHGRT---------GGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQ---TTRLFARW 391 (764)
T ss_pred EcCCCCEEEEeccc---------CcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEecccc---ceeeeccc
Confidence 99999887765544 3488888333222222233569999999999999999999998886 33332
Q ss_pred -----------------EeecccccC------------------------------------------------------
Q 005140 494 -----------------SMRTAQHAG------------------------------------------------------ 502 (712)
Q Consensus 494 -----------------d~~~~~~~~------------------------------------------------------ 502 (712)
|+..-...+
T Consensus 392 g~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSn 471 (764)
T KOG1063|consen 392 GRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSN 471 (764)
T ss_pred ccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccC
Confidence 221000000
Q ss_pred ------------c---ee---------------------------EEEEeCCC--ceeEEEEccCCCeEEEEeccC--CC
Q 005140 503 ------------R---VS---------------------------KLTTLKGK--QANALFWSPSGRFIVLAGLKG--FN 536 (712)
Q Consensus 503 ------------~---~~---------------------------~~~~~~~~--~v~~l~~spdg~~l~~~~~~~--~d 536 (712)
. +. .++.+-+| .+.+++.||+|+++|+++... ..
T Consensus 472 Ka~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~eh 551 (764)
T KOG1063|consen 472 KAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEH 551 (764)
T ss_pred CCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccc
Confidence 0 00 01111223 477899999999999998643 35
Q ss_pred ceEEEEECCcceeee--eccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCcee-------eeecccceeeeEE
Q 005140 537 GQLEFYNVDELETMA--TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLL-------YRTLKDHFFQFLW 607 (712)
Q Consensus 537 g~v~iwd~~~~~~~~--~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~-------~~~~~~~i~~~~w 607 (712)
..|++|+..+..... ..|.-.|+.++|||||+||++.+. |.++.+|....... .+.|..-||+..|
T Consensus 552 AvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsR-----DRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW 626 (764)
T KOG1063|consen 552 AVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSR-----DRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSW 626 (764)
T ss_pred eEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeec-----CceEEeeeeecccchhhhhccccccceEEEEccc
Confidence 679999998766655 478899999999999999999999 99999998753322 2336677999999
Q ss_pred ecCCCCCCChhhHHHHH
Q 005140 608 RPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 608 ~p~~~~l~s~~~d~~i~ 624 (712)
+|++.+++|+|.|++++
T Consensus 627 ~pde~~FaTaSRDK~Vk 643 (764)
T KOG1063|consen 627 SPDEKYFATASRDKKVK 643 (764)
T ss_pred CcccceeEEecCCceEE
Confidence 99999999999999875
No 67
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=4.5e-23 Score=182.55 Aligned_cols=275 Identities=17% Similarity=0.252 Sum_probs=212.5
Q ss_pred CcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-CCC-eeEEEecCCCCEEEEEcCCCCCCCcC
Q 005140 205 PEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HPQ-VKLIDFSPGEKYLVTYSSHEPSNPRD 281 (712)
Q Consensus 205 ~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~ 281 (712)
....+..|+..|+.+.|+-||+|.++++.+. +++|+.. .+..+.++. |.. |..++.+.|...+++++.|
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~-rg~liktYsghG~EVlD~~~s~Dnskf~s~GgD------- 80 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPL-RGALIKTYSGHGHEVLDAALSSDNSKFASCGGD------- 80 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeeccc-ccceeeeecCCCceeeeccccccccccccCCCC-------
Confidence 4456688999999999999999999999998 7899999 889999885 443 9999999999999999999
Q ss_pred CCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCce--ecccccc
Q 005140 282 ANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT--LIDKKSL 358 (712)
Q Consensus 282 ~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~--~~~~~~~ 358 (712)
..|.+||+.+|+.++.|.+|...+. .++|+. +...+++++ |.++++||..+.. ++....-
T Consensus 81 ---k~v~vwDV~TGkv~Rr~rgH~aqVN-------------tV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQilde 143 (307)
T KOG0316|consen 81 ---KAVQVWDVNTGKVDRRFRGHLAQVN-------------TVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDE 143 (307)
T ss_pred ---ceEEEEEcccCeeeeecccccceee-------------EEEecC-cceEEEeccccceeEEEEcccCCCCccchhhh
Confidence 8999999999999999999998874 799999 999999999 9999999988544 3333323
Q ss_pred cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccc
Q 005140 359 KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKST 438 (712)
Q Consensus 359 ~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~ 438 (712)
...+|.++..+ +..|+. |+.|+..+.
T Consensus 144 a~D~V~Si~v~--~heIva-----GS~DGtvRt----------------------------------------------- 169 (307)
T KOG0316|consen 144 AKDGVSSIDVA--EHEIVA-----GSVDGTVRT----------------------------------------------- 169 (307)
T ss_pred hcCceeEEEec--ccEEEe-----eccCCcEEE-----------------------------------------------
Confidence 34456665554 233444 445555443
Q ss_pred cccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCc----
Q 005140 439 YTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQ---- 514 (712)
Q Consensus 439 ~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~---- 514 (712)
|+++...... --+ ..+|++++|+++|+..++++.++ +|++.|-.++. ++..+.+|.
T Consensus 170 ------ydiR~G~l~s--Dy~---g~pit~vs~s~d~nc~La~~l~s---tlrLlDk~tGk------lL~sYkGhkn~ey 229 (307)
T KOG0316|consen 170 ------YDIRKGTLSS--DYF---GHPITSVSFSKDGNCSLASSLDS---TLRLLDKETGK------LLKSYKGHKNMEY 229 (307)
T ss_pred ------EEeecceeeh--hhc---CCcceeEEecCCCCEEEEeeccc---eeeecccchhH------HHHHhccccccee
Confidence 3333211100 012 67899999999999999999999 99999988766 566666553
Q ss_pred eeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccc---cceeeEEECCCCCEEEEEEccceeccccEEEE
Q 005140 515 ANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEH---FMATDVEWDPTGRYVATAVTSVHEMENGFNIW 587 (712)
Q Consensus 515 v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~---~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw 587 (712)
-...+++.....+++++. ||.|++||+....++..... ..++++++.|.-..++++.. +.+..|
T Consensus 230 kldc~l~qsdthV~sgSE---DG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~------~~~~~~ 296 (307)
T KOG0316|consen 230 KLDCCLNQSDTHVFSGSE---DGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG------HGDLFW 296 (307)
T ss_pred eeeeeecccceeEEeccC---CceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC------Cceece
Confidence 245677777888999988 99999999998887765322 23789999998887887776 455555
No 68
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.1e-22 Score=203.55 Aligned_cols=380 Identities=14% Similarity=0.173 Sum_probs=247.9
Q ss_pred eEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-CCC-eeEEE
Q 005140 184 QFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HPQ-VKLID 260 (712)
Q Consensus 184 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~~-v~~i~ 260 (712)
-+++++.|..+.++|. .+...+..|..|...++|++.+|.-.|+.|++.|- |++|++++...+...|. |.. |.+++
T Consensus 69 Wiv~GsDD~~IrVfny-nt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~ 147 (794)
T KOG0276|consen 69 WIVTGSDDMQIRVFNY-NTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVA 147 (794)
T ss_pred eEEEecCCceEEEEec-ccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEE
Confidence 3566777788889999 78889999999999999999999999999999998 88999997788888884 555 99999
Q ss_pred ecCC-CCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCC-CCCEEEEec
Q 005140 261 FSPG-EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGG-KDKYFAKLG 338 (712)
Q Consensus 261 ~Spd-g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-dg~~la~~~ 338 (712)
|.|. .+.+|+++-| ++|+||.+.+..+..++.+|...+. ++.+-++ |..||++++
T Consensus 148 fnPkD~ntFaS~sLD----------rTVKVWslgs~~~nfTl~gHekGVN-------------~Vdyy~~gdkpylIsga 204 (794)
T KOG0276|consen 148 FNPKDPNTFASASLD----------RTVKVWSLGSPHPNFTLEGHEKGVN-------------CVDYYTGGDKPYLISGA 204 (794)
T ss_pred ecCCCccceeeeecc----------ccEEEEEcCCCCCceeeeccccCcc-------------eEEeccCCCcceEEecC
Confidence 9994 5789999999 9999999988889999999987664 6777762 234999999
Q ss_pred -CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEE
Q 005140 339 -KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYW 417 (712)
Q Consensus 339 -d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (712)
|.+|+|||..+...+.....|..+|..+.|+|.-.+|++ |+.|++++||.- .+.+.....++.-....++.-
T Consensus 205 DD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiis-----gsEDGTvriWhs--~Ty~lE~tLn~gleRvW~I~~ 277 (794)
T KOG0276|consen 205 DDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIIS-----GSEDGTVRIWNS--KTYKLEKTLNYGLERVWCIAA 277 (794)
T ss_pred CCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEE-----ecCCccEEEecC--cceehhhhhhcCCceEEEEee
Confidence 999999999999999999999999999999999999999 889999887743 333222233332233333444
Q ss_pred CcCCCEEEEEEccccccccc---------ccccEEEEEEecC---------C----------cceeEEEecCCCCceEEE
Q 005140 418 QSSGDYLAVKVDRYTKTKKS---------TYTGFELFRIKER---------D----------IPIEVLELDNKNDKIIAF 469 (712)
Q Consensus 418 s~~g~~l~~~~~~~~~~~~~---------~~~~~~l~~l~~~---------~----------~~~~~~~l~~h~~~v~~~ 469 (712)
.+.+..++++.+.+....+. -..+-.+|..... + .|....++-.-.-....+
T Consensus 278 ~k~~~~i~vG~Deg~i~v~lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L 357 (794)
T KOG0276|consen 278 HKGDGKIAVGFDEGSVTVKLGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTL 357 (794)
T ss_pred cCCCCeEEEeccCCcEEEEccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHh
Confidence 55566666666655421100 0001122221110 0 011111111111123346
Q ss_pred EEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCccee
Q 005140 470 AWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET 549 (712)
Q Consensus 470 ~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~ 549 (712)
+-||+|++++++ +|| .-.||..-. .+.-.-+....+.|++|....++-.. ++.|.++ .+++.
T Consensus 358 ~hsPNGrfV~Vc-gdG---EyiIyTala---------~RnK~fG~~~eFvw~~dsne~avRes---~~~vki~--knfke 419 (794)
T KOG0276|consen 358 AHSPNGRFVVVC-GDG---EYIIYTALA---------LRNKAFGSGLEFVWAADSNEFAVRES---NGNVKIF--KNFKE 419 (794)
T ss_pred ccCCCCcEEEEe-cCc---cEEEEEeee---------hhhcccccceeEEEcCCCCeEEEEec---CCceEEE--eccee
Confidence 778888766654 456 566665411 11111234566778887666665544 6777777 44444
Q ss_pred eeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEec-CceeeeecccceeeeEEecCCCCCCChhhHH
Q 005140 550 MATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRTLKDHFFQFLWRPRPPSFLTPEKEE 621 (712)
Q Consensus 550 ~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~~~~~i~~~~w~p~~~~l~s~~~d~ 621 (712)
..+...... +..--.|.+|...+ ++.+++||.. |.++.++. -...++.|+-+|..++.++.+.
T Consensus 420 ~ksi~~~~~--~e~i~gg~Llg~~s------s~~~~fydW~~~~lVrrI~-v~~k~v~w~d~g~lVai~~d~S 483 (794)
T KOG0276|consen 420 HKSIRPDMS--AEGIFGGPLLGVRS------SDFLCFYDWESGELVRRIE-VTSKHVYWSDNGELVAIAGDDS 483 (794)
T ss_pred ccccccccc--eeeecCCceEEEEe------CCeEEEEEcccceEEEEEe-eccceeEEecCCCEEEEEecCc
Confidence 433222221 11111233333333 4778888855 45554443 2344667777777666555443
No 69
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=8.6e-24 Score=198.45 Aligned_cols=279 Identities=14% Similarity=0.276 Sum_probs=208.3
Q ss_pred CcccccCCCcccceEEEcCCC-cEEEEEecCc-eEEeecccCcceeeeec-CCC-eeEEEecCCCCEEEEEcCCCCCCCc
Q 005140 205 PEPVYKRSYWTESFVQWSPLG-TYLATVHRQG-AAVWGGANTFNRLMRYA-HPQ-VKLIDFSPGEKYLVTYSSHEPSNPR 280 (712)
Q Consensus 205 ~~~~~~~~~~~v~~v~~Spdg-~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~~-v~~i~~Spdg~~l~t~s~d~~~~~~ 280 (712)
.+..+.+|...|.|++=+|.. ..+|+|+.|| |+|||+. ...++.++. |.+ |..|+++. ..+++++.|
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnls-qR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdD------ 128 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLS-QRECIRTFKAHEGLVRGICVTQ--TSFFTVGDD------ 128 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehh-hhhhhheeecccCceeeEEecc--cceEEecCC------
Confidence 344668999999999999987 7899999999 8899999 777777773 665 99999987 678899999
Q ss_pred CCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceecccccccc
Q 005140 281 DANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKV 360 (712)
Q Consensus 281 ~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~ 360 (712)
.+|+.|.+ .|.+++++.+..... | +.-+. .+..+|+++ ..|.|||.....++.......
T Consensus 129 ----KtvK~wk~-~~~p~~tilg~s~~~---------g-----Idh~~-~~~~FaTcG-e~i~IWD~~R~~Pv~smswG~ 187 (433)
T KOG0268|consen 129 ----KTVKQWKI-DGPPLHTILGKSVYL---------G-----IDHHR-KNSVFATCG-EQIDIWDEQRDNPVSSMSWGA 187 (433)
T ss_pred ----cceeeeec-cCCcceeeecccccc---------c-----ccccc-ccccccccC-ceeeecccccCCccceeecCC
Confidence 89999997 556677776554322 2 22222 445667665 458999998777776666777
Q ss_pred cCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccc
Q 005140 361 ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 440 (712)
Q Consensus 361 ~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~ 440 (712)
+.|.++.|+|....|+.. ++.|+. |.+||
T Consensus 188 Dti~svkfNpvETsILas----~~sDrs--IvLyD--------------------------------------------- 216 (433)
T KOG0268|consen 188 DSISSVKFNPVETSILAS----CASDRS--IVLYD--------------------------------------------- 216 (433)
T ss_pred CceeEEecCCCcchheee----eccCCc--eEEEe---------------------------------------------
Confidence 778888888876544421 223332 33333
Q ss_pred cEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEE
Q 005140 441 GFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANAL 518 (712)
Q Consensus 441 ~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l 518 (712)
++.. .|...+.+ ...-+.++|+|.+-.|++++.|. +++.||++.... ++....+| .+.++
T Consensus 217 ------~R~~-~Pl~KVi~---~mRTN~IswnPeafnF~~a~ED~---nlY~~DmR~l~~-----p~~v~~dhvsAV~dV 278 (433)
T KOG0268|consen 217 ------LRQA-SPLKKVIL---TMRTNTICWNPEAFNFVAANEDH---NLYTYDMRNLSR-----PLNVHKDHVSAVMDV 278 (433)
T ss_pred ------cccC-Cccceeee---eccccceecCccccceeeccccc---cceehhhhhhcc-----cchhhcccceeEEEe
Confidence 3321 22223333 44556789999888888988898 899999976543 45555554 68999
Q ss_pred EEccCCCeEEEEeccCCCceEEEEECCcceeeeecc---ccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 519 FWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE---HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 519 ~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~---~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
.|||.|+-+++|++ |.+|+||..+.+......| ...|.++.||.|.+||++||. |+.|++|...
T Consensus 279 dfsptG~Efvsgsy---DksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSd-----d~nvRlWka~ 345 (433)
T KOG0268|consen 279 DFSPTGQEFVSGSY---DKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSD-----DGNVRLWKAK 345 (433)
T ss_pred ccCCCcchhccccc---cceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCC-----Ccceeeeecc
Confidence 99999999999999 9999999998665544433 367899999999999999999 9999999865
No 70
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.7e-23 Score=207.95 Aligned_cols=356 Identities=14% Similarity=0.210 Sum_probs=262.7
Q ss_pred cccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCC--CeeEEEecCCCCEEEEEcCCCCCCCcCC
Q 005140 206 EPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHP--QVKLIDFSPGEKYLVTYSSHEPSNPRDA 282 (712)
Q Consensus 206 ~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~--~v~~i~~Spdg~~l~t~s~d~~~~~~~~ 282 (712)
.+.+..+...|.++.|+|...++.++..+| +.||+.+ +...+..++.. .|++..|-+--+++++|+.|
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnye-tqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD-------- 76 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYE-TQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDD-------- 76 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecc-cceeeeeeeecccchhhheeeeccceEEEecCC--------
Confidence 345666888999999999999999999888 8899999 88888888754 48999999999999999999
Q ss_pred CccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCc-eecccccccc
Q 005140 283 NRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESF-TLIDKKSLKV 360 (712)
Q Consensus 283 ~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~-~~~~~~~~~~ 360 (712)
..|+||+..|++.++.|..|.+-+. +++.+| ..-|+.+++ |-+|++|+.+.. .+......|.
T Consensus 77 --~~IrVfnynt~ekV~~FeAH~DyIR-------------~iavHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~ 140 (794)
T KOG0276|consen 77 --MQIRVFNYNTGEKVKTFEAHSDYIR-------------SIAVHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHE 140 (794)
T ss_pred --ceEEEEecccceeeEEeecccccee-------------eeeecC-CCCeEEecCCccEEEEeeccCceeeeeEEcCcc
Confidence 9999999999999999999998774 789999 999999999 899999998844 3444456677
Q ss_pred cCeeeEEECCC-CCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeee--ecceeEEECcCCCEEEEEEccccccccc
Q 005140 361 ENVMDFSWSPT-DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFS--VSDCKMYWQSSGDYLAVKVDRYTKTKKS 437 (712)
Q Consensus 361 ~~v~~~~~sp~-~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~g~~l~~~~~~~~~~~~~ 437 (712)
.-|.+++|.|. .+.+|+ ++-|.+++||.+..+... .+...+. ++.+...-.++-.||+++++|.+
T Consensus 141 HyVMqv~fnPkD~ntFaS-----~sLDrTVKVWslgs~~~n--fTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t----- 208 (794)
T KOG0276|consen 141 HYVMQVAFNPKDPNTFAS-----ASLDRTVKVWSLGSPHPN--FTLEGHEKGVNCVDYYTGGDKPYLISGADDLT----- 208 (794)
T ss_pred eEEEEEEecCCCccceee-----eeccccEEEEEcCCCCCc--eeeeccccCcceEEeccCCCcceEEecCCCce-----
Confidence 78999999996 567787 788999998877654432 2222233 33333323345569999999988
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeE
Q 005140 438 TYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANA 517 (712)
Q Consensus 438 ~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~ 517 (712)
+.+|+...+.+ ..++.+|...|..+.|+|.-..|++|+.|| +++||+..+-.. .....+....+.+
T Consensus 209 ----iKvWDyQtk~C---V~TLeGHt~Nvs~v~fhp~lpiiisgsEDG---TvriWhs~Ty~l----E~tLn~gleRvW~ 274 (794)
T KOG0276|consen 209 ----IKVWDYQTKSC---VQTLEGHTNNVSFVFFHPELPIIISGSEDG---TVRIWNSKTYKL----EKTLNYGLERVWC 274 (794)
T ss_pred ----EEEeecchHHH---HHHhhcccccceEEEecCCCcEEEEecCCc---cEEEecCcceeh----hhhhhcCCceEEE
Confidence 89999886543 356889999999999999999999999999 999999754321 1222233457888
Q ss_pred EEEccCCCeEEEEeccCCCceEE------------------EEECCc------------------ceeeee--cccc---
Q 005140 518 LFWSPSGRFIVLAGLKGFNGQLE------------------FYNVDE------------------LETMAT--AEHF--- 556 (712)
Q Consensus 518 l~~spdg~~l~~~~~~~~dg~v~------------------iwd~~~------------------~~~~~~--~~~~--- 556 (712)
++-.+.++.+++|.. .|.+. ||...+ ++.+.. ..-+
T Consensus 275 I~~~k~~~~i~vG~D---eg~i~v~lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~e 351 (794)
T KOG0276|consen 275 IAAHKGDGKIAVGFD---EGSVTVKLGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVE 351 (794)
T ss_pred EeecCCCCeEEEecc---CCcEEEEccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccc
Confidence 888887777777654 33332 222110 111100 0000
Q ss_pred -ceeeEEECCCCCEEEEEEccceeccccEEEEEecCceeeeecccceeeeEEecCCCCCCChhhHHHH
Q 005140 557 -MATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLKDHFFQFLWRPRPPSFLTPEKEEEI 623 (712)
Q Consensus 557 -~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~~~~~i~~~~w~p~~~~l~s~~~d~~i 623 (712)
....++-||+|++++.++. |.+.||..-+ +.....+.-..+.|.+++...+.-...+.|
T Consensus 352 iyPq~L~hsPNGrfV~Vcgd------GEyiIyTala--~RnK~fG~~~eFvw~~dsne~avRes~~~v 411 (794)
T KOG0276|consen 352 IYPQTLAHSPNGRFVVVCGD------GEYIIYTALA--LRNKAFGSGLEFVWAADSNEFAVRESNGNV 411 (794)
T ss_pred cchHHhccCCCCcEEEEecC------ccEEEEEeee--hhhcccccceeEEEcCCCCeEEEEecCCce
Confidence 1125788999999888875 8999997421 233455777889999997766655444444
No 71
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.92 E-value=1.8e-23 Score=195.87 Aligned_cols=295 Identities=16% Similarity=0.217 Sum_probs=236.9
Q ss_pred ecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-CC-CeeEEEecCCCCEEEEEcC
Q 005140 197 WNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPGEKYLVTYSS 273 (712)
Q Consensus 197 w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~~Spdg~~l~t~s~ 273 (712)
|.. .-+...++++|..=|.|+++-|-.++++||+.|+ +.|||+. +++...++. |- .|..+++|+--.||++++.
T Consensus 137 WHa--pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDla-tg~LkltltGhi~~vr~vavS~rHpYlFs~ge 213 (460)
T KOG0285|consen 137 WHA--PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLA-TGQLKLTLTGHIETVRGVAVSKRHPYLFSAGE 213 (460)
T ss_pred ccC--cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcc-cCeEEEeecchhheeeeeeecccCceEEEecC
Confidence 544 3456678899999999999999999999999999 7799999 888887774 54 4999999999999999999
Q ss_pred CCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCcee
Q 005140 274 HEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTL 352 (712)
Q Consensus 274 d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~ 352 (712)
| +.|+.||+...+.+|.+.+|-..+. ++...| .-..|++++ |.+++|||+.+...
T Consensus 214 d----------k~VKCwDLe~nkvIR~YhGHlS~V~-------------~L~lhP-Tldvl~t~grDst~RvWDiRtr~~ 269 (460)
T KOG0285|consen 214 D----------KQVKCWDLEYNKVIRHYHGHLSGVY-------------CLDLHP-TLDVLVTGGRDSTIRVWDIRTRAS 269 (460)
T ss_pred C----------CeeEEEechhhhhHHHhccccceeE-------------EEeccc-cceeEEecCCcceEEEeeecccce
Confidence 9 9999999999999999999988763 788999 899999999 99999999998888
Q ss_pred cccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccc
Q 005140 353 IDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYT 432 (712)
Q Consensus 353 ~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~ 432 (712)
+.....|...|..+.+.|.+..+++ ++.|.++++ |++..++......-++.....+..+|.-..+++++.+..
T Consensus 270 V~~l~GH~~~V~~V~~~~~dpqvit-----~S~D~tvrl--WDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dni 342 (460)
T KOG0285|consen 270 VHVLSGHTNPVASVMCQPTDPQVIT-----GSHDSTVRL--WDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNI 342 (460)
T ss_pred EEEecCCCCcceeEEeecCCCceEE-----ecCCceEEE--eeeccCceeEeeecccceeeEEecCCchhhhhccCCccc
Confidence 8788889999999999999999998 777777665 555556655555556666777788998888888877754
Q ss_pred cccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEE---EE
Q 005140 433 KTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKL---TT 509 (712)
Q Consensus 433 ~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~---~~ 509 (712)
+-|.+.....- ..+.+|+..|++++.+.|| ++++|+..+ .+.+||.+++-.......+ .+
T Consensus 343 ----------k~w~~p~g~f~---~nlsgh~~iintl~~nsD~-v~~~G~dng---~~~fwdwksg~nyQ~~~t~vqpGS 405 (460)
T KOG0285|consen 343 ----------KQWKLPEGEFL---QNLSGHNAIINTLSVNSDG-VLVSGGDNG---SIMFWDWKSGHNYQRGQTIVQPGS 405 (460)
T ss_pred ----------eeccCCccchh---hccccccceeeeeeeccCc-eEEEcCCce---EEEEEecCcCcccccccccccCCc
Confidence 66766654322 2367899999999998776 566777777 8999999876432111111 11
Q ss_pred eC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 510 LK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 510 ~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
+. ...|.+.+|...|..|+++.. |.+|++|.-+
T Consensus 406 l~sEagI~as~fDktg~rlit~ea---dKtIk~~keD 439 (460)
T KOG0285|consen 406 LESEAGIFASCFDKTGSRLITGEA---DKTIKMYKED 439 (460)
T ss_pred cccccceeEEeecccCceEEeccC---CcceEEEecc
Confidence 11 225788999999999999988 9999999765
No 72
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.92 E-value=5.5e-23 Score=235.94 Aligned_cols=287 Identities=12% Similarity=0.228 Sum_probs=207.3
Q ss_pred Cc-eEEeecccCcceeeee------cCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc--------e
Q 005140 234 QG-AAVWGGANTFNRLMRY------AHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK--------V 297 (712)
Q Consensus 234 ~~-i~iw~~~~~~~~~~~~------~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~--------~ 297 (712)
+| .++|+.. .......+ .|.+ |.+++|+|+|++||+++.| +.|+||++.+.. .
T Consensus 457 ~gl~~~~~~~-~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D----------~~I~iwd~~~~~~~~~~~~~~ 525 (793)
T PLN00181 457 EGLCKYLSFS-KLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVN----------KKIKIFECESIIKDGRDIHYP 525 (793)
T ss_pred hhhhhhhccc-ceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCC----------CEEEEEECCcccccccccccc
Confidence 45 4577776 44433222 2444 9999999999999999999 999999975321 1
Q ss_pred eeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECC-CCCeE
Q 005140 298 MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSP-TDPII 375 (712)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l 375 (712)
+..+.++. .+ . .++|++.++.+|++++ |++|++||+.+++.+.....|...|.+++|+| ++.+|
T Consensus 526 ~~~~~~~~-~v--------~-----~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L 591 (793)
T PLN00181 526 VVELASRS-KL--------S-----GICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLL 591 (793)
T ss_pred eEEecccC-ce--------e-----eEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEE
Confidence 11122211 11 1 5888762467899888 99999999998887777777888899999997 67888
Q ss_pred EEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCccee
Q 005140 376 SLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIE 455 (712)
Q Consensus 376 a~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 455 (712)
++ ++.|+.+++|.+. +.. .+
T Consensus 592 ~S-----gs~Dg~v~iWd~~--~~~----------------------~~------------------------------- 611 (793)
T PLN00181 592 AS-----GSDDGSVKLWSIN--QGV----------------------SI------------------------------- 611 (793)
T ss_pred EE-----EcCCCEEEEEECC--CCc----------------------EE-------------------------------
Confidence 88 7777776665432 111 00
Q ss_pred EEEecCCCCceEEEEEe-eCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEec
Q 005140 456 VLELDNKNDKIIAFAWE-PKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGL 532 (712)
Q Consensus 456 ~~~l~~h~~~v~~~~~s-p~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~ 532 (712)
..+. +...+.++.|+ ++|.+|++++.|+ .|++||+++... .+..+.+| .|.++.|+ ++.+|++++.
T Consensus 612 -~~~~-~~~~v~~v~~~~~~g~~latgs~dg---~I~iwD~~~~~~-----~~~~~~~h~~~V~~v~f~-~~~~lvs~s~ 680 (793)
T PLN00181 612 -GTIK-TKANICCVQFPSESGRSLAFGSADH---KVYYYDLRNPKL-----PLCTMIGHSKTVSYVRFV-DSSTLVSSST 680 (793)
T ss_pred -EEEe-cCCCeEEEEEeCCCCCEEEEEeCCC---eEEEEECCCCCc-----cceEecCCCCCEEEEEEe-CCCEEEEEEC
Confidence 0011 13467788885 5799999999999 999999975432 23334333 68999997 7889999988
Q ss_pred cCCCceEEEEECCcc------eeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCc-eee--------
Q 005140 533 KGFNGQLEFYNVDEL------ETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK-LLY-------- 595 (712)
Q Consensus 533 ~~~dg~v~iwd~~~~------~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~-~~~-------- 595 (712)
|+.|++||+... ..+.+ +|...++.++|+|+|.+|++++. |+.++||+.... .+.
T Consensus 681 ---D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~-----D~~v~iw~~~~~~~~~s~~~~~~~ 752 (793)
T PLN00181 681 ---DNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSE-----TNEVFVYHKAFPMPVLSYKFKTID 752 (793)
T ss_pred ---CCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeC-----CCEEEEEECCCCCceEEEecccCC
Confidence 999999999742 33333 56677889999999999999999 999999996522 110
Q ss_pred -------eecccceeeeEEecCCCCCCChhhHHHHH
Q 005140 596 -------RTLKDHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 596 -------~~~~~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
..+...|.+++|+|++..|++++.++.|+
T Consensus 753 ~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~ 788 (793)
T PLN00181 753 PVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIK 788 (793)
T ss_pred cccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEE
Confidence 11224589999999999999999988775
No 73
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.92 E-value=6e-23 Score=185.23 Aligned_cols=289 Identities=16% Similarity=0.227 Sum_probs=217.4
Q ss_pred ccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee-cCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCC
Q 005140 207 PVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-AHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDAN 283 (712)
Q Consensus 207 ~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~ 283 (712)
..+++|..+++-+.++.+|.+|.+++.|. ..||-.. +++++.++ .|.+ |.|++.+-+.++|+||+.|
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~-nGerlGty~GHtGavW~~Did~~s~~liTGSAD--------- 73 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSL-NGERLGTYDGHTGAVWCCDIDWDSKHLITGSAD--------- 73 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEec-CCceeeeecCCCceEEEEEecCCcceeeecccc---------
Confidence 35789999999999999999999999999 5599887 78888888 4665 9999999999999999999
Q ss_pred ccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec------CCeEEEEEcCCc-------
Q 005140 284 RVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG------KNMISVYETESF------- 350 (712)
Q Consensus 284 ~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~------d~~i~iwd~~~~------- 350 (712)
.++++||+.+|+.+..++...... .+.|++ +|++++.+. .+.|.+++++..
T Consensus 74 -~t~kLWDv~tGk~la~~k~~~~Vk--------------~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ 137 (327)
T KOG0643|consen 74 -QTAKLWDVETGKQLATWKTNSPVK--------------RVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSE 137 (327)
T ss_pred -ceeEEEEcCCCcEEEEeecCCeeE--------------EEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhccc
Confidence 899999999999999998765543 589999 999888776 367999998732
Q ss_pred eecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc-ceeeeeeeeecceeEEECcCCCEEEEEEc
Q 005140 351 TLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE-ELRQKNLFSVSDCKMYWQSSGDYLAVKVD 429 (712)
Q Consensus 351 ~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~g~~l~~~~~ 429 (712)
.++.+...+...++..-|+|-+.+|++ +...+.|..|+..++. .+.....+...+..+.++++..++++++.
T Consensus 138 ep~~kI~t~~skit~a~Wg~l~~~ii~-------Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~ 210 (327)
T KOG0643|consen 138 EPYLKIPTPDSKITSALWGPLGETIIA-------GHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK 210 (327)
T ss_pred CceEEecCCccceeeeeecccCCEEEE-------ecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc
Confidence 223333344466899999999999998 4445566677777753 44455566667778889999999999999
Q ss_pred ccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCc------
Q 005140 430 RYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGR------ 503 (712)
Q Consensus 430 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~------ 503 (712)
|.+ ..+|++..-... .+... ..||++.+++|...+++.+++.... .|.-=+.+.++...+
T Consensus 211 Dtt---------akl~D~~tl~v~-Kty~t---e~PvN~aaisP~~d~VilgGGqeA~-dVTTT~~r~GKFEArFyh~i~ 276 (327)
T KOG0643|consen 211 DTT---------AKLVDVRTLEVL-KTYTT---ERPVNTAAISPLLDHVILGGGQEAM-DVTTTSTRAGKFEARFYHLIF 276 (327)
T ss_pred Ccc---------ceeeeccceeeE-EEeee---cccccceecccccceEEecCCceee-eeeeecccccchhhhHHHHHH
Confidence 877 577776643221 11222 6799999999988888887764311 222222222222111
Q ss_pred eeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 504 VSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 504 ~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
...+..+.+| +|++++|+|+|+..++|+. ||.|++.-++
T Consensus 277 eEEigrvkGHFGPINsvAfhPdGksYsSGGE---DG~VR~h~Fd 317 (327)
T KOG0643|consen 277 EEEIGRVKGHFGPINSVAFHPDGKSYSSGGE---DGYVRLHHFD 317 (327)
T ss_pred HHHhccccccccCcceeEECCCCcccccCCC---CceEEEEEec
Confidence 1234455555 8999999999999999998 9999987544
No 74
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=3.6e-24 Score=197.62 Aligned_cols=276 Identities=17% Similarity=0.238 Sum_probs=213.3
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEE
Q 005140 255 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYF 334 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~l 334 (712)
.+.|..|||||+||++|+.| |-|.+||..+|+..+.++......-.-...++. |+.||. |...+
T Consensus 215 h~EcA~FSPDgqyLvsgSvD----------GFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVl-----ci~FSR-DsEMl 278 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSVD----------GFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVL-----CISFSR-DSEML 278 (508)
T ss_pred chhheeeCCCCceEeecccc----------ceeeeehhccchhhhhhhhhhhcceeecccceE-----EEeecc-cHHHh
Confidence 48999999999999999999 999999999998766654432211000111111 789999 99999
Q ss_pred EEec-CCeEEEEEcCCceeccccc-ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecc
Q 005140 335 AKLG-KNMISVYETESFTLIDKKS-LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSD 412 (712)
Q Consensus 335 a~~~-d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 412 (712)
|+++ ||.|++|.+.+|..+.... .|..+|+++.||.|+..+++ ++.|..++|.-+
T Consensus 279 AsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS-----~sfD~tvRiHGl------------------ 335 (508)
T KOG0275|consen 279 ASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILS-----ASFDQTVRIHGL------------------ 335 (508)
T ss_pred hccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhc-----ccccceEEEecc------------------
Confidence 9999 9999999999999987764 68889999999999999988 777776664211
Q ss_pred eeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEE
Q 005140 413 CKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISF 492 (712)
Q Consensus 413 ~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i 492 (712)
..|+. ..++.+|...|+...|+++|+++++++.|+ +|++
T Consensus 336 ------KSGK~--------------------------------LKEfrGHsSyvn~a~ft~dG~~iisaSsDg---tvkv 374 (508)
T KOG0275|consen 336 ------KSGKC--------------------------------LKEFRGHSSYVNEATFTDDGHHIISASSDG---TVKV 374 (508)
T ss_pred ------ccchh--------------------------------HHHhcCccccccceEEcCCCCeEEEecCCc---cEEE
Confidence 11111 134668999999999999999999999999 9999
Q ss_pred EEeecccccCceeEEEEeC----CCceeEEEEccCC-CeEEEEeccCCCceEEEEECCcceeeee-----ccccceeeEE
Q 005140 493 YSMRTAQHAGRVSKLTTLK----GKQANALFWSPSG-RFIVLAGLKGFNGQLEFYNVDELETMAT-----AEHFMATDVE 562 (712)
Q Consensus 493 ~d~~~~~~~~~~~~~~~~~----~~~v~~l~~spdg-~~l~~~~~~~~dg~v~iwd~~~~~~~~~-----~~~~~v~~~~ 562 (712)
|+.++.. .+.++. ..+|+++..-|.. ..++++.. .++|+|.++. |+++.+ ...+...+.+
T Consensus 375 W~~Ktte------C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr---sntv~imn~q-GQvVrsfsSGkREgGdFi~~~ 444 (508)
T KOG0275|consen 375 WHGKTTE------CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR---SNTVYIMNMQ-GQVVRSFSSGKREGGDFINAI 444 (508)
T ss_pred ecCcchh------hhhhccCCCCcccceeEEEcCCCCceEEEEcC---CCeEEEEecc-ceEEeeeccCCccCCceEEEE
Confidence 9997755 333333 2267887777754 46667766 7899999998 555544 2335667889
Q ss_pred ECCCCCEEEEEEccceeccccEEEEEec-Cceeeee--cccceeeeEEecCCCCCCChhhHHHHHH
Q 005140 563 WDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEIAK 625 (712)
Q Consensus 563 ~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i~~ 625 (712)
.||.|.|+.+.+. |+.++.+.+. |.+-... |...+..++-+|..+.|++-++|+.++-
T Consensus 445 lSpkGewiYcigE-----D~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKL 505 (508)
T KOG0275|consen 445 LSPKGEWIYCIGE-----DGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKL 505 (508)
T ss_pred ecCCCcEEEEEcc-----CcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhh
Confidence 9999999999999 9999999876 5554443 5567888999999999999999998763
No 75
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.6e-23 Score=210.50 Aligned_cols=266 Identities=17% Similarity=0.278 Sum_probs=210.6
Q ss_pred eEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec--CCC-eeEE
Q 005140 184 QFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA--HPQ-VKLI 259 (712)
Q Consensus 184 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~--~~~-v~~i 259 (712)
.+++.. ...+.+|+. ..+.......-+...|+++.|+++|++||.|..+| |.|||.. ..+.+..+. |.. |.++
T Consensus 190 ~laVal-g~~vylW~~-~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~-~~k~~~~~~~~h~~rvg~l 266 (484)
T KOG0305|consen 190 VLAVAL-GQSVYLWSA-SSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVK-EQKKTRTLRGSHASRVGSL 266 (484)
T ss_pred eEEEEe-cceEEEEec-CCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehh-hccccccccCCcCceeEEE
Confidence 344444 345669998 34444444444478999999999999999999999 7799998 666665552 444 9999
Q ss_pred EecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeee-ccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec
Q 005140 260 DFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRD-FKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG 338 (712)
Q Consensus 260 ~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~ 338 (712)
+|+ +..+.+|+.+ +.|..+|++..+.... +.+|...+. .++|++ |+.++|+++
T Consensus 267 aW~--~~~lssGsr~----------~~I~~~dvR~~~~~~~~~~~H~qeVC-------------gLkws~-d~~~lASGg 320 (484)
T KOG0305|consen 267 AWN--SSVLSSGSRD----------GKILNHDVRISQHVVSTLQGHRQEVC-------------GLKWSP-DGNQLASGG 320 (484)
T ss_pred ecc--CceEEEecCC----------CcEEEEEEecchhhhhhhhcccceee-------------eeEECC-CCCeeccCC
Confidence 998 6788999999 9999999988876554 777877763 589999 999999999
Q ss_pred -CCeEEEEEcCCceecccccccccCeeeEEECCC-CCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEE
Q 005140 339 -KNMISVYETESFTLIDKKSLKVENVMDFSWSPT-DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMY 416 (712)
Q Consensus 339 -d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~-~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (712)
|+.+.|||......+.....|...|..++|+|- ...||+ |++.....|.+|+..+...+.... ....++.+.
T Consensus 321 nDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAs-----GGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~ 394 (484)
T KOG0305|consen 321 NDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLAT-----GGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLI 394 (484)
T ss_pred CccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEE-----cCCCcccEEEEEEcCCCcEecccc-cCCceeeEE
Confidence 999999999766666666678889999999996 667887 777777888888887766555443 455778899
Q ss_pred ECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEee
Q 005140 417 WQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMR 496 (712)
Q Consensus 417 ~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~ 496 (712)
|++..+-|+++..... ..+.||...... ....+.+|...|..++|||||..+++++.|. +++||++-
T Consensus 395 Wsk~~kEi~sthG~s~-------n~i~lw~~ps~~---~~~~l~gH~~RVl~la~SPdg~~i~t~a~DE---Tlrfw~~f 461 (484)
T KOG0305|consen 395 WSKKYKELLSTHGYSE-------NQITLWKYPSMK---LVAELLGHTSRVLYLALSPDGETIVTGAADE---TLRFWNLF 461 (484)
T ss_pred EcCCCCEEEEecCCCC-------CcEEEEeccccc---eeeeecCCcceeEEEEECCCCCEEEEecccC---cEEecccc
Confidence 9999998888655432 247899886522 3356779999999999999999999999999 99999984
Q ss_pred c
Q 005140 497 T 497 (712)
Q Consensus 497 ~ 497 (712)
.
T Consensus 462 ~ 462 (484)
T KOG0305|consen 462 D 462 (484)
T ss_pred C
Confidence 3
No 76
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.91 E-value=1.8e-23 Score=199.65 Aligned_cols=284 Identities=14% Similarity=0.200 Sum_probs=208.8
Q ss_pred CCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcc--eeeeec--CCCeeEEEecCCCCEEEEEcCCCCCC
Q 005140 204 KPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN--RLMRYA--HPQVKLIDFSPGEKYLVTYSSHEPSN 278 (712)
Q Consensus 204 ~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~--~~~~~~--~~~v~~i~~Spdg~~l~t~s~d~~~~ 278 (712)
.....+..|.+.|..+.|-++...|++|+.|. |.+|+.. ..+ .+.++. ..+|+++.|.++++++++.+.|
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~-~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d---- 240 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVL-GEKSELISTLAGSLGNITSIDFDSDNKHVIAASND---- 240 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcc-cchhhhhhhhhccCCCcceeeecCCCceEEeecCC----
Confidence 34456788999999999999989999999999 7799987 333 333332 3359999999999999999999
Q ss_pred CcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccccc
Q 005140 279 PRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKS 357 (712)
Q Consensus 279 ~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~ 357 (712)
+.+++|++..++...++.+|.+.++ ++.|.- ....+++++ |.+|++||+.........
T Consensus 241 ------~~~r~Wnvd~~r~~~TLsGHtdkVt-------------~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~- 299 (459)
T KOG0288|consen 241 ------KNLRLWNVDSLRLRHTLSGHTDKVT-------------AAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTV- 299 (459)
T ss_pred ------Cceeeeeccchhhhhhhccccccee-------------eehhhc-cccceeeccccchhhhhhhhhhheeccc-
Confidence 8999999999999999999998874 567776 666688888 999999999875544222
Q ss_pred ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccc
Q 005140 358 LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKS 437 (712)
Q Consensus 358 ~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~ 437 (712)
+....+.++..+ ...+++ +..|+.
T Consensus 300 l~~S~cnDI~~~--~~~~~S-----gH~Dkk------------------------------------------------- 323 (459)
T KOG0288|consen 300 LPGSQCNDIVCS--ISDVIS-----GHFDKK------------------------------------------------- 323 (459)
T ss_pred cccccccceEec--ceeeee-----cccccc-------------------------------------------------
Confidence 233334444443 122222 223333
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeE
Q 005140 438 TYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANA 517 (712)
Q Consensus 438 ~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~ 517 (712)
+++|+++.... ...+.+ .+.|+++..+++|..+.+++.|. ++.+.|+++......+.......++..+.
T Consensus 324 ----vRfwD~Rs~~~-~~sv~~---gg~vtSl~ls~~g~~lLsssRDd---tl~viDlRt~eI~~~~sA~g~k~asDwtr 392 (459)
T KOG0288|consen 324 ----VRFWDIRSADK-TRSVPL---GGRVTSLDLSMDGLELLSSSRDD---TLKVIDLRTKEIRQTFSAEGFKCASDWTR 392 (459)
T ss_pred ----eEEEeccCCce-eeEeec---CcceeeEeeccCCeEEeeecCCC---ceeeeecccccEEEEeeccccccccccce
Confidence 34455443221 112333 56999999999999999998888 89999997654221111111111335788
Q ss_pred EEEccCCCeEEEEeccCCCceEEEEECCcceeeee---cc-ccceeeEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 518 LFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT---AE-HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 518 l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~---~~-~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
+.|||+|.|+++|+. ||.|+||++.++++... .+ +..|++++|+|.|.++++++. +..+.+|.
T Consensus 393 vvfSpd~~YvaAGS~---dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk-----~~~v~lW~ 459 (459)
T KOG0288|consen 393 VVFSPDGSYVAAGSA---DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADK-----QKAVTLWT 459 (459)
T ss_pred eEECCCCceeeeccC---CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccC-----CcceEecC
Confidence 999999999999998 99999999999888664 22 236999999999999999999 88999983
No 77
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=9.2e-23 Score=212.65 Aligned_cols=246 Identities=17% Similarity=0.272 Sum_probs=178.5
Q ss_pred cc-CCCcccceEEEcCCCcEEEEEecCc-eEEeeccc------------------------------C-c---c------
Q 005140 209 YK-RSYWTESFVQWSPLGTYLATVHRQG-AAVWGGAN------------------------------T-F---N------ 246 (712)
Q Consensus 209 ~~-~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~------------------------------~-~---~------ 246 (712)
++ .|.+.|.++.||+||+|||+|+.|+ |+||.+.. . . .
T Consensus 262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 35 8999999999999999999999999 67997652 0 0 0
Q ss_pred -------------------eeeee-cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCC
Q 005140 247 -------------------RLMRY-AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSA 305 (712)
Q Consensus 247 -------------------~~~~~-~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~ 305 (712)
+++.| +|. .|.+|.||.++ +|++++.| .+|++|++....+|+.|....
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMD----------KTVRLWh~~~~~CL~~F~Hnd 410 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMD----------KTVRLWHPGRKECLKVFSHND 410 (712)
T ss_pred ccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEecccc----------ccEEeecCCCcceeeEEecCC
Confidence 00011 133 48999999764 89999999 999999999999999997554
Q ss_pred cccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCC
Q 005140 306 DEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGG 384 (712)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~ 384 (712)
- ++ |++|+|.|++||++|+ |+.++||++...+++.-.-++ .-|++++|+|+|+..++ |+
T Consensus 411 f-VT-------------cVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avI-----Gt 470 (712)
T KOG0283|consen 411 F-VT-------------CVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVI-----GT 470 (712)
T ss_pred e-eE-------------EEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEE-----EE
Confidence 4 33 8999998889999999 999999999987766433333 45999999999999998 66
Q ss_pred CCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCC
Q 005140 385 GNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKND 464 (712)
Q Consensus 385 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~ 464 (712)
-++.++++ +....+ +.. -+.+...... .. .|.
T Consensus 471 ~~G~C~fY--~t~~lk-----------------------~~~-----------------~~~I~~~~~K----k~-~~~- 502 (712)
T KOG0283|consen 471 FNGYCRFY--DTEGLK-----------------------LVS-----------------DFHIRLHNKK----KK-QGK- 502 (712)
T ss_pred eccEEEEE--EccCCe-----------------------EEE-----------------eeeEeeccCc----cc-cCc-
Confidence 66655543 222111 100 0111110000 01 223
Q ss_pred ceEEEEEee-CCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC----ceeEEEEccCCCeEEEEeccCCCceE
Q 005140 465 KIIAFAWEP-KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK----QANALFWSPSGRFIVLAGLKGFNGQL 539 (712)
Q Consensus 465 ~v~~~~~sp-~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~----~v~~l~~spdg~~l~~~~~~~~dg~v 539 (712)
.|+.+.|.| +...+++.++|. .|+|||.++.. ++..+.+. .-....|+.||++|++++. |..|
T Consensus 503 rITG~Q~~p~~~~~vLVTSnDS---rIRI~d~~~~~------lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~se---Ds~V 570 (712)
T KOG0283|consen 503 RITGLQFFPGDPDEVLVTSNDS---RIRIYDGRDKD------LVHKFKGFRNTSSQISASFSSDGKHIVSASE---DSWV 570 (712)
T ss_pred eeeeeEecCCCCCeEEEecCCC---ceEEEeccchh------hhhhhcccccCCcceeeeEccCCCEEEEeec---CceE
Confidence 899999998 445688888998 99999996544 44444432 2356789999999999998 9999
Q ss_pred EEEECC
Q 005140 540 EFYNVD 545 (712)
Q Consensus 540 ~iwd~~ 545 (712)
++|+++
T Consensus 571 YiW~~~ 576 (712)
T KOG0283|consen 571 YIWKND 576 (712)
T ss_pred EEEeCC
Confidence 999985
No 78
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3.8e-22 Score=193.30 Aligned_cols=285 Identities=14% Similarity=0.209 Sum_probs=213.8
Q ss_pred CcccceEEEcCCCcEEEEEecCc-eEEeecccCc-ceeeeecCC--CeeEEEecCCCC-EEEEEcCCCCCCCcCCCccEE
Q 005140 213 YWTESFVQWSPLGTYLATVHRQG-AAVWGGANTF-NRLMRYAHP--QVKLIDFSPGEK-YLVTYSSHEPSNPRDANRVVI 287 (712)
Q Consensus 213 ~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~-~~~~~~~~~--~v~~i~~Spdg~-~l~t~s~d~~~~~~~~~~~~I 287 (712)
...|++|+|+|.-.+|.+++.++ ++||.+++.. ..+..++.. .|.+.+|+|+|. .+++++.. ..+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rr----------ky~ 282 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRR----------KYL 282 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccc----------eEE
Confidence 46799999999999999999999 7899776332 344444433 499999999999 78888877 789
Q ss_pred EEEEccCCcee--eeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCee
Q 005140 288 NIFDVRTGKVM--RDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVM 364 (712)
Q Consensus 288 ~iwd~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~ 364 (712)
..||+.+++.. ....++.... ...+..|+ ++++|+..+ .|.|.+....++.++....+ .+.|.
T Consensus 283 ysyDle~ak~~k~~~~~g~e~~~------------~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~ 348 (514)
T KOG2055|consen 283 YSYDLETAKVTKLKPPYGVEEKS------------MERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVS 348 (514)
T ss_pred EEeeccccccccccCCCCcccch------------hheeEecC-CCCeEEEcccCceEEeehhhhhhhhheeee-ccEEe
Confidence 99999888743 3333333211 11578899 999999999 99999999998888765422 23489
Q ss_pred eEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEE
Q 005140 365 DFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFEL 444 (712)
Q Consensus 365 ~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l 444 (712)
++.|+.+++.|+. + ++.+.||.|++.....+.. |.-+|.
T Consensus 349 ~~~fsSdsk~l~~-----~--~~~GeV~v~nl~~~~~~~r------------f~D~G~---------------------- 387 (514)
T KOG2055|consen 349 DFTFSSDSKELLA-----S--GGTGEVYVWNLRQNSCLHR------------FVDDGS---------------------- 387 (514)
T ss_pred eEEEecCCcEEEE-----E--cCCceEEEEecCCcceEEE------------EeecCc----------------------
Confidence 9999999998887 3 3344788888765432211 211111
Q ss_pred EEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC--CceeEEEEcc
Q 005140 445 FRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG--KQANALFWSP 522 (712)
Q Consensus 445 ~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~v~~l~~sp 522 (712)
-.-+++|.|++|.+||+|+..| -|.|||.++.-....-+++..+.+ ..|+++.|+|
T Consensus 388 -------------------v~gts~~~S~ng~ylA~GS~~G---iVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~ 445 (514)
T KOG2055|consen 388 -------------------VHGTSLCISLNGSYLATGSDSG---IVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNH 445 (514)
T ss_pred -------------------cceeeeeecCCCceEEeccCcc---eEEEeccchhhccCCCCchhhhhhhheeeeeeeeCc
Confidence 1224578889999999999999 999999765433333446666553 3689999999
Q ss_pred CCCeEEEEeccCCCceEEEEECCcceeeee-----ccccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 523 SGRFIVLAGLKGFNGQLEFYNVDELETMAT-----AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 523 dg~~l~~~~~~~~dg~v~iwd~~~~~~~~~-----~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
|++.|+.++... ...+++..+.+..+... ...+.++|++|||.|.|+|.|.. ++.+.+|.+.
T Consensus 446 d~qiLAiaS~~~-knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe-----~grv~l~kL~ 512 (514)
T KOG2055|consen 446 DAQILAIASRVK-KNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNE-----AGRVHLFKLH 512 (514)
T ss_pred chhhhhhhhhcc-ccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecC-----CCceeeEeec
Confidence 999999998655 78899998887766653 23378999999999999999999 8999999874
No 79
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.90 E-value=2.3e-21 Score=200.71 Aligned_cols=396 Identities=13% Similarity=0.192 Sum_probs=287.4
Q ss_pred EEECCeeEEEecCCCCCCC----cccccCCCcccceEEEcCCC--cEEEEEecCc-eEEeecccCcceeeeecCC--Cee
Q 005140 187 IRSGTDTEVLWNDARHLKP----EPVYKRSYWTESFVQWSPLG--TYLATVHRQG-AAVWGGANTFNRLMRYAHP--QVK 257 (712)
Q Consensus 187 ~~~~~~~~~~w~~~~~~~~----~~~~~~~~~~v~~v~~Spdg--~~lat~~~~~-i~iw~~~~~~~~~~~~~~~--~v~ 257 (712)
....++.+.+|+......+ ...++.....++++ ++|.- +-|+.|+.+| +.||++. +.+.+.++.+- .|+
T Consensus 129 a~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvr-t~K~v~~f~~~~s~IT 206 (910)
T KOG1539|consen 129 AVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LHPSTYLNKIVVGSSQGRLQLWNVR-TGKVVYTFQEFFSRIT 206 (910)
T ss_pred EEEccCcEEEEEeccccccccccceeeeccCCceeeE-ecchhheeeEEEeecCCcEEEEEec-cCcEEEEeccccccee
Confidence 3344566779987332111 11122222225544 45542 3467778887 9999999 99999998643 499
Q ss_pred EEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEe
Q 005140 258 LIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKL 337 (712)
Q Consensus 258 ~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~ 337 (712)
++.=+|-=..+|.|..+ |+|.|++++.++.+.+|+...+.++ .++|.. ||..+...
T Consensus 207 ~ieqsPaLDVVaiG~~~----------G~ViifNlK~dkil~sFk~d~g~Vt-------------slSFrt-DG~p~las 262 (910)
T KOG1539|consen 207 AIEQSPALDVVAIGLEN----------GTVIIFNLKFDKILMSFKQDWGRVT-------------SLSFRT-DGNPLLAS 262 (910)
T ss_pred EeccCCcceEEEEeccC----------ceEEEEEcccCcEEEEEEcccccee-------------EEEecc-CCCeeEEe
Confidence 99999999999999999 9999999999999999998766654 799999 99865544
Q ss_pred c--CCeEEEEEcCCceeccccc-ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc--cceeeeeeeeecc
Q 005140 338 G--KNMISVYETESFTLIDKKS-LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK--EELRQKNLFSVSD 412 (712)
Q Consensus 338 ~--d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~ 412 (712)
+ .|.+.+||++..+++.... .|.++|....|.|....+++ ++.|+..++|++|.+.+ +.++....|..+.
T Consensus 263 ~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~t-----a~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp 337 (910)
T KOG1539|consen 263 GRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVT-----AGADNSLKVWVFDSGDGVPRLLRSRGGHSAPP 337 (910)
T ss_pred ccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEee-----ccCCCceeEEEeeCCCCcchheeeccCCCCCc
Confidence 4 7999999999887766543 67788999999999999998 88999999999997665 4566666666666
Q ss_pred eeEEEC-cCCCEEEEEEcccccccccc-----------------------c-----------------------------
Q 005140 413 CKMYWQ-SSGDYLAVKVDRYTKTKKST-----------------------Y----------------------------- 439 (712)
Q Consensus 413 ~~~~~s-~~g~~l~~~~~~~~~~~~~~-----------------------~----------------------------- 439 (712)
..+.|. .+|.++..+..|.+-...+. .
T Consensus 338 ~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~ 417 (910)
T KOG1539|consen 338 SCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITA 417 (910)
T ss_pred hheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEE
Confidence 666554 66777776665543110000 0
Q ss_pred ----ccEEEEEEecCCcceeEEE---ecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC
Q 005140 440 ----TGFELFRIKERDIPIEVLE---LDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG 512 (712)
Q Consensus 440 ----~~~~l~~l~~~~~~~~~~~---l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~ 512 (712)
.....|+++.+......+. +..-...+++++.+++|++.+.|+..| .|.+|+++++-....+. -...+.
T Consensus 418 h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G---~Id~fNmQSGi~r~sf~-~~~ah~ 493 (910)
T KOG1539|consen 418 HKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKG---TIDRFNMQSGIHRKSFG-DSPAHK 493 (910)
T ss_pred ecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCC---eEEEEEcccCeeecccc-cCcccc
Confidence 0123344433222111111 111136788999999999999999888 99999998875321110 001224
Q ss_pred CceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeecc-ccceeeEEECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 513 KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE-HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 513 ~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~-~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
.+|..++...-++.+++++. +|.+.+||+.+..++.+.. ...++.+..+.....+|.+.. |-.|+++|...
T Consensus 494 ~~V~gla~D~~n~~~vsa~~---~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~d-----df~I~vvD~~t 565 (910)
T KOG1539|consen 494 GEVTGLAVDGTNRLLVSAGA---DGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALD-----DFSIRVVDVVT 565 (910)
T ss_pred CceeEEEecCCCceEEEccC---cceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcC-----ceeEEEEEchh
Confidence 47899999888999999998 9999999999877666533 356788888888888999998 89999999886
Q ss_pred ceeeee---cccceeeeEEecCCCCCCChhhHHHHHH
Q 005140 592 KLLYRT---LKDHFFQFLWRPRPPSFLTPEKEEEIAK 625 (712)
Q Consensus 592 ~~~~~~---~~~~i~~~~w~p~~~~l~s~~~d~~i~~ 625 (712)
..+.+. |.++|+++.|||+|++|++++.|++||.
T Consensus 566 ~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~ 602 (910)
T KOG1539|consen 566 RKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRT 602 (910)
T ss_pred hhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEE
Confidence 655433 7799999999999999999999998874
No 80
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=5.8e-22 Score=192.15 Aligned_cols=277 Identities=13% Similarity=0.196 Sum_probs=209.8
Q ss_pred cccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCccee----ee----------------ecCCCeeEEEecCC
Q 005140 206 EPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRL----MR----------------YAHPQVKLIDFSPG 264 (712)
Q Consensus 206 ~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~----~~----------------~~~~~v~~i~~Spd 264 (712)
...+..|+-++.|+++|||++++.+++.++ |.=|+.. +++.. .+ .|...+.+++.|||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~-tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVL-TGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehh-cCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence 345678999999999999999999999999 6688776 33311 11 11223899999999
Q ss_pred CCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEE
Q 005140 265 EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMIS 343 (712)
Q Consensus 265 g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~ 343 (712)
|+|||+|+.+ ..|.||+..+++.++.|++|.+.+. +++|-. ...-+++++ |.+++
T Consensus 214 gkylatgg~d----------~~v~Iw~~~t~ehv~~~~ghr~~V~-------------~L~fr~-gt~~lys~s~Drsvk 269 (479)
T KOG0299|consen 214 GKYLATGGRD----------RHVQIWDCDTLEHVKVFKGHRGAVS-------------SLAFRK-GTSELYSASADRSVK 269 (479)
T ss_pred CcEEEecCCC----------ceEEEecCcccchhhccccccccee-------------eeeeec-CccceeeeecCCceE
Confidence 9999999999 8999999999999999999998874 678876 445555555 99999
Q ss_pred EEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCE
Q 005140 344 VYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDY 423 (712)
Q Consensus 344 iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 423 (712)
+|+++....+...-.|...|.++.-..-.+.+.+ |+.|.+.++|.+ +. ...
T Consensus 270 vw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtV-----GgrDrT~rlwKi--~e----------------------esq 320 (479)
T KOG0299|consen 270 VWSIDQLSYVETLYGHQDGVLGIDALSRERCVTV-----GGRDRTVRLWKI--PE----------------------ESQ 320 (479)
T ss_pred EEehhHhHHHHHHhCCccceeeechhcccceEEe-----ccccceeEEEec--cc----------------------cce
Confidence 9999988888888789899999988877888777 777777776653 11 001
Q ss_pred EEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCc
Q 005140 424 LAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGR 503 (712)
Q Consensus 424 l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~ 503 (712)
+.+.+|.+.+-|++|- +...|++|+.+| .|.+|++........
T Consensus 321 ---------------------------------lifrg~~~sidcv~~I-n~~HfvsGSdnG---~IaLWs~~KKkplf~ 363 (479)
T KOG0299|consen 321 ---------------------------------LIFRGGEGSIDCVAFI-NDEHFVSGSDNG---SIALWSLLKKKPLFT 363 (479)
T ss_pred ---------------------------------eeeeCCCCCeeeEEEe-cccceeeccCCc---eEEEeeecccCceeE
Confidence 2223556777888886 567889999999 999999976542100
Q ss_pred eeEEEE-eCCC-------ceeEEEEccCCCeEEEEeccCCCceEEEEECCcc----eeeeec-cccceeeEEECCCCCEE
Q 005140 504 VSKLTT-LKGK-------QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL----ETMATA-EHFMATDVEWDPTGRYV 570 (712)
Q Consensus 504 ~~~~~~-~~~~-------~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~----~~~~~~-~~~~v~~~~~spdg~~l 570 (712)
....+. .+.. .|++++..|...++++|+. +|.|++|-+..+ .++... -.+.|++++|+++|++|
T Consensus 364 ~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~---~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~i 440 (479)
T KOG0299|consen 364 SRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSW---SGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRI 440 (479)
T ss_pred eeccccccCCccccccccceeeeEecccCceEEecCC---CCceEEEEecCCccccceeeecccccEEEEEEEccCCCEE
Confidence 000010 1111 5788999999999999998 999999998855 333332 34789999999999988
Q ss_pred EEEEcc
Q 005140 571 ATAVTS 576 (712)
Q Consensus 571 ~t~s~~ 576 (712)
++|...
T Consensus 441 vagiGk 446 (479)
T KOG0299|consen 441 VAGIGK 446 (479)
T ss_pred EEeccc
Confidence 888763
No 81
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=4.4e-21 Score=189.80 Aligned_cols=315 Identities=16% Similarity=0.280 Sum_probs=219.1
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEE
Q 005140 256 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA 335 (712)
Q Consensus 256 v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la 335 (712)
-+.+.|||-|.||+|.... | |.+|--.+-..++.|..+... .+.||| +.+||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~----------G-I~lWGG~~f~r~~RF~Hp~Vq---------------~idfSP-~EkYLV 265 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQ----------G-IALWGGESFDRIQRFYHPGVQ---------------FIDFSP-NEKYLV 265 (698)
T ss_pred eeeEEecCCceEEEEEecc----------c-eeeecCccHHHHHhccCCCce---------------eeecCC-ccceEE
Confidence 5789999999999999988 5 889987666677777655433 589999 999999
Q ss_pred Eec------C------CeEEEEEcCCceeccccccccc---CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc
Q 005140 336 KLG------K------NMISVYETESFTLIDKKSLKVE---NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE 400 (712)
Q Consensus 336 ~~~------d------~~i~iwd~~~~~~~~~~~~~~~---~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~ 400 (712)
+-+ + ..+.|||+.+|.+......... .-.-+.||.|++++|..+. -.|.+|+.++..
T Consensus 266 T~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~--------~sisIyEtpsf~ 337 (698)
T KOG2314|consen 266 TYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG--------NSISIYETPSFM 337 (698)
T ss_pred EecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc--------ceEEEEecCcee
Confidence 876 1 5799999999987765433112 2346799999999997422 347889999888
Q ss_pred ceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEE
Q 005140 401 ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAV 480 (712)
Q Consensus 401 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~ 480 (712)
.+..+.+.-..+..+.|+|.+..||+-+.... .....+.|..+.... .+....+ |+-.-..+.|-.+|.+||+
T Consensus 338 lld~Kslki~gIr~FswsP~~~llAYwtpe~~----~~parvtL~evPs~~-~iRt~nl--fnVsDckLhWQk~gdyLcv 410 (698)
T KOG2314|consen 338 LLDKKSLKISGIRDFSWSPTSNLLAYWTPETN----NIPARVTLMEVPSKR-EIRTKNL--FNVSDCKLHWQKSGDYLCV 410 (698)
T ss_pred eecccccCCccccCcccCCCcceEEEEccccc----CCcceEEEEecCccc-eeeeccc--eeeeccEEEeccCCcEEEE
Confidence 77777776677778899999999998766433 111123333333221 1111111 1222334789999999998
Q ss_pred EEcCC-------CCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCc----ce
Q 005140 481 IHGDS-------PRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE----LE 548 (712)
Q Consensus 481 ~~~d~-------~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~----~~ 548 (712)
-.... ...++.||.++.... ++..+. ...+-.++|-|.|..+++.+......++.+|.+.+ .+
T Consensus 411 kvdR~tK~~~~g~f~n~eIfrireKdI-----pve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~ 485 (698)
T KOG2314|consen 411 KVDRHTKSKVKGQFSNLEIFRIREKDI-----PVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPS 485 (698)
T ss_pred EEEeeccccccceEeeEEEEEeeccCC-----CceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchh
Confidence 65432 223577787765543 444444 34688999999999887766444467899998872 33
Q ss_pred eeeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEecC-ceeeee--cccceeeeEEecCCCCCCChhh
Q 005140 549 TMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG-KLLYRT--LKDHFFQFLWRPRPPSFLTPEK 619 (712)
Q Consensus 549 ~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g-~~~~~~--~~~~i~~~~w~p~~~~l~s~~~ 619 (712)
++.......++.+.|||.|++++.+... +..+.+..+|.+- ...... .....+.+.|.|.|+++++++.
T Consensus 486 lVk~~dk~~~N~vfwsPkG~fvvva~l~--s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 486 LVKELDKKFANTVFWSPKGRFVVVAALV--SRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred hhhhhcccccceEEEcCCCcEEEEEEec--ccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeee
Confidence 4445666788899999999999988762 1267888898773 222222 2345778999999999998763
No 82
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=6.8e-21 Score=176.96 Aligned_cols=263 Identities=16% Similarity=0.239 Sum_probs=202.9
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEE
Q 005140 255 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYF 334 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~l 334 (712)
.|.++.||++|.+|++++.| .+++|||..+|+.++++..++-.+. .++|.. ....+
T Consensus 16 ~i~sl~fs~~G~~litss~d----------Dsl~LYd~~~g~~~~ti~skkyG~~-------------~~~Fth-~~~~~ 71 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSSED----------DSLRLYDSLSGKQVKTINSKKYGVD-------------LACFTH-HSNTV 71 (311)
T ss_pred ceeEEEecCCCCEEEEecCC----------CeEEEEEcCCCceeeEeeccccccc-------------EEEEec-CCceE
Confidence 49999999999999999888 7999999999999999988754432 577877 55544
Q ss_pred EEec---CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeec
Q 005140 335 AKLG---KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVS 411 (712)
Q Consensus 335 a~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 411 (712)
..++ |.+|+.-++.+.+.+.-...|...|..++.+|-+..+++ ++.|.++++|.+..+.
T Consensus 72 i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS-----~S~D~tvrLWDlR~~~------------- 133 (311)
T KOG1446|consen 72 IHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLS-----SSLDKTVRLWDLRVKK------------- 133 (311)
T ss_pred EEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEe-----cccCCeEEeeEecCCC-------------
Confidence 4444 899999999999999888899999999999999888887 7777777766554321
Q ss_pred ceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEE
Q 005140 412 DCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDIS 491 (712)
Q Consensus 412 ~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~ 491 (712)
.+.. +. ...-...||.|.|-.||++.+.. .|+
T Consensus 134 ----------------------------------------cqg~-l~----~~~~pi~AfDp~GLifA~~~~~~---~Ik 165 (311)
T KOG1446|consen 134 ----------------------------------------CQGL-LN----LSGRPIAAFDPEGLIFALANGSE---LIK 165 (311)
T ss_pred ----------------------------------------CceE-Ee----cCCCcceeECCCCcEEEEecCCC---eEE
Confidence 1100 01 11222468999999999998876 899
Q ss_pred EEEeecccccCceeEEEEeC-----CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccc----c-ceeeE
Q 005140 492 FYSMRTAQHAGRVSKLTTLK-----GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEH----F-MATDV 561 (712)
Q Consensus 492 i~d~~~~~~~~~~~~~~~~~-----~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~----~-~v~~~ 561 (712)
+||++.-... +..++. ....+.+.|||||++++++.. .+.+++.|.-+|.++.+... . -..+.
T Consensus 166 LyD~Rs~dkg----PF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~---~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a 238 (311)
T KOG1446|consen 166 LYDLRSFDKG----PFTTFSITDNDEAEWTDLEFSPDGKSILLSTN---ASFIYLLDAFDGTVKSTFSGYPNAGNLPLSA 238 (311)
T ss_pred EEEecccCCC----CceeEccCCCCccceeeeEEcCCCCEEEEEeC---CCcEEEEEccCCcEeeeEeeccCCCCcceeE
Confidence 9999875332 333332 225788999999999999987 89999999988887765221 1 22478
Q ss_pred EECCCCCEEEEEEccceeccccEEEEEec-Cceeeee---cccceeeeEEecCCCCCCChhh
Q 005140 562 EWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRT---LKDHFFQFLWRPRPPSFLTPEK 619 (712)
Q Consensus 562 ~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~---~~~~i~~~~w~p~~~~l~s~~~ 619 (712)
+|+|||++|++++. |+.+.+|++. |..+... +...+.++.|.|.-..++|++.
T Consensus 239 ~ftPds~Fvl~gs~-----dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s 295 (311)
T KOG1446|consen 239 TFTPDSKFVLSGSD-----DGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS 295 (311)
T ss_pred EECCCCcEEEEecC-----CCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc
Confidence 99999999999999 9999999987 5554433 4578888999999888888764
No 83
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.90 E-value=4.5e-23 Score=184.07 Aligned_cols=272 Identities=14% Similarity=0.213 Sum_probs=217.8
Q ss_pred cCCCeeEEEecC---CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecC
Q 005140 252 AHPQVKLIDFSP---GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGG 328 (712)
Q Consensus 252 ~~~~v~~i~~Sp---dg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 328 (712)
|...|..++||| +|-+|++++.| +.-.+=+-.+|.-+.+|.+|++.+ |. .....
T Consensus 13 htrpvvdl~~s~itp~g~flisa~kd----------~~pmlr~g~tgdwigtfeghkgav------------w~-~~l~~ 69 (334)
T KOG0278|consen 13 HTRPVVDLAFSPITPDGYFLISASKD----------GKPMLRNGDTGDWIGTFEGHKGAV------------WS-ATLNK 69 (334)
T ss_pred CCcceeEEeccCCCCCceEEEEeccC----------CCchhccCCCCCcEEeeeccCcce------------ee-eecCc
Confidence 344589999985 89999999999 666666778999999999999887 75 55555
Q ss_pred CCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeee
Q 005140 329 GKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL 407 (712)
Q Consensus 329 ~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 407 (712)
+-...|+++ |-+-+|||.-+|..+... .|..-|..++|+.|.++|++ |+.+.-.+|+
T Consensus 70 -na~~aasaaadftakvw~a~tgdelhsf-~hkhivk~~af~~ds~~llt-----gg~ekllrvf--------------- 127 (334)
T KOG0278|consen 70 -NATRAASAAADFTAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLT-----GGQEKLLRVF--------------- 127 (334)
T ss_pred -hhhhhhhhcccchhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhc-----cchHHHhhhh---------------
Confidence 666677777 999999999998877554 34445888899998888887 5554444433
Q ss_pred eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCC
Q 005140 408 FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPR 487 (712)
Q Consensus 408 ~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~ 487 (712)
++.....| ..++.+|.+.|..+.|....+.|++++.|+
T Consensus 128 --------------------------------------dln~p~Ap--p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~-- 165 (334)
T KOG0278|consen 128 --------------------------------------DLNRPKAP--PKEISGHTGGIRTVLWCHEDKCILSSADDK-- 165 (334)
T ss_pred --------------------------------------hccCCCCC--chhhcCCCCcceeEEEeccCceEEeeccCC--
Confidence 33322222 245668999999999999889999988888
Q ss_pred CeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccc-cceeeEEECC
Q 005140 488 PDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEH-FMATDVEWDP 565 (712)
Q Consensus 488 ~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~-~~v~~~~~sp 565 (712)
+|++||.+++. .+.++. .++++++.+|++|++|.++. .+.|.+||..+..++..... ..|.+.+.+|
T Consensus 166 -tVRLWD~rTgt------~v~sL~~~s~VtSlEvs~dG~ilTia~----gssV~Fwdaksf~~lKs~k~P~nV~SASL~P 234 (334)
T KOG0278|consen 166 -TVRLWDHRTGT------EVQSLEFNSPVTSLEVSQDGRILTIAY----GSSVKFWDAKSFGLLKSYKMPCNVESASLHP 234 (334)
T ss_pred -ceEEEEeccCc------EEEEEecCCCCcceeeccCCCEEEEec----CceeEEeccccccceeeccCccccccccccC
Confidence 99999999876 556655 66899999999999998876 68999999999999887554 6789999999
Q ss_pred CCCEEEEEEccceeccccEEEEEec-Cceee---eecccceeeeEEecCCCCCCChhhHHHHHHH
Q 005140 566 TGRYVATAVTSVHEMENGFNIWSFN-GKLLY---RTLKDHFFQFLWRPRPPSFLTPEKEEEIAKN 626 (712)
Q Consensus 566 dg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~---~~~~~~i~~~~w~p~~~~l~s~~~d~~i~~~ 626 (712)
+..++++|+. |..++.||+. |..+. +.|.++|.++.|+|+|...+++|+|++||-|
T Consensus 235 ~k~~fVaGge-----d~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlW 294 (334)
T KOG0278|consen 235 KKEFFVAGGE-----DFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLW 294 (334)
T ss_pred CCceEEecCc-----ceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEE
Confidence 9999999999 8999999987 44333 4477999999999999999999999999844
No 84
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.1e-20 Score=166.29 Aligned_cols=274 Identities=16% Similarity=0.299 Sum_probs=197.9
Q ss_pred eeeeecC-CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEc------cCCc---------eeeeccCCCccccc
Q 005140 247 RLMRYAH-PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDV------RTGK---------VMRDFKGSADEFAV 310 (712)
Q Consensus 247 ~~~~~~~-~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~------~~g~---------~~~~~~~~~~~~~~ 310 (712)
.+..+.. +.|.+++|+|.|...+.|+.. .+++|--. +.+. ..+.-+.|.+.+
T Consensus 25 ~i~~l~dsqairav~fhp~g~lyavgsns----------kt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsi-- 92 (350)
T KOG0641|consen 25 AINILEDSQAIRAVAFHPAGGLYAVGSNS----------KTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSI-- 92 (350)
T ss_pred EEEEecchhheeeEEecCCCceEEeccCC----------ceEEEEccccccCcccccccccCCCeEEeeeccccCccE--
Confidence 3444433 359999999999999999887 67776532 1111 112233344443
Q ss_pred CCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcC--Cceecc---cccccccCeeeEEECCC----CCeEEEEee
Q 005140 311 GGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETE--SFTLID---KKSLKVENVMDFSWSPT----DPIISLFVP 380 (712)
Q Consensus 311 ~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~--~~~~~~---~~~~~~~~v~~~~~sp~----~~~la~~~~ 380 (712)
+ |.+||| +|.+||+++ |++|++.-.+ +.+... ....|.+.|.+++|-.+ +.+|++
T Consensus 93 ----------y-c~~ws~-~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s--- 157 (350)
T KOG0641|consen 93 ----------Y-CTAWSP-CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILAS--- 157 (350)
T ss_pred ----------E-EEEecC-ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEe---
Confidence 2 789999 999999999 9999986544 333322 23456677888888544 445553
Q ss_pred cCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEec
Q 005140 381 ELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELD 460 (712)
Q Consensus 381 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~ 460 (712)
++-+..+|++-+....+.+ ..+.
T Consensus 158 ---~gagdc~iy~tdc~~g~~~------------------------------------------------------~a~s 180 (350)
T KOG0641|consen 158 ---AGAGDCKIYITDCGRGQGF------------------------------------------------------HALS 180 (350)
T ss_pred ---cCCCcceEEEeecCCCCcc------------------------------------------------------eeec
Confidence 2444555555443322211 2344
Q ss_pred CCCCceEEE-EEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC---------CCceeEEEEccCCCeEEEE
Q 005140 461 NKNDKIIAF-AWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK---------GKQANALFWSPSGRFIVLA 530 (712)
Q Consensus 461 ~h~~~v~~~-~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~---------~~~v~~l~~spdg~~l~~~ 530 (712)
+|.+.|.++ .| +|-.|++++.|. +|++||++-.. .+.++. ...|.+++..|.|+.|+++
T Consensus 181 ghtghilalysw--n~~m~~sgsqdk---tirfwdlrv~~------~v~~l~~~~~~~glessavaav~vdpsgrll~sg 249 (350)
T KOG0641|consen 181 GHTGHILALYSW--NGAMFASGSQDK---TIRFWDLRVNS------CVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASG 249 (350)
T ss_pred CCcccEEEEEEe--cCcEEEccCCCc---eEEEEeeeccc------eeeeccCcccCCCcccceeEEEEECCCcceeeec
Confidence 777777765 45 688999999999 99999997533 233222 2357889999999999999
Q ss_pred eccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCceee-------eecccc
Q 005140 531 GLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLY-------RTLKDH 601 (712)
Q Consensus 531 ~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~-------~~~~~~ 601 (712)
-. |....+||++.++.+.. .|...|.++.|||...|+++++. |..|++-|++|.+.. ..|.+.
T Consensus 250 ~~---dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~sy-----d~~ikltdlqgdla~el~~~vv~ehkdk 321 (350)
T KOG0641|consen 250 HA---DSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSY-----DMKIKLTDLQGDLAHELPIMVVAEHKDK 321 (350)
T ss_pred cC---CCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecc-----cceEEEeecccchhhcCceEEEEeccCc
Confidence 88 99999999999998876 45588999999999999999999 999999999987543 347789
Q ss_pred eeeeEEecCCCCCCChhhHHHH
Q 005140 602 FFQFLWRPRPPSFLTPEKEEEI 623 (712)
Q Consensus 602 i~~~~w~p~~~~l~s~~~d~~i 623 (712)
+.++.|+|+.-.+++.+.|++.
T Consensus 322 ~i~~rwh~~d~sfisssadkt~ 343 (350)
T KOG0641|consen 322 AIQCRWHPQDFSFISSSADKTA 343 (350)
T ss_pred eEEEEecCccceeeeccCcceE
Confidence 9999999999888888887654
No 85
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1e-21 Score=176.02 Aligned_cols=272 Identities=15% Similarity=0.262 Sum_probs=196.6
Q ss_pred ceEEEcC--CCcE-EEEEe-----cCc-eEEeecccCcc---eeeeecC-CCeeEEEecCC-CCEEEEEcCCCCCCCcCC
Q 005140 217 SFVQWSP--LGTY-LATVH-----RQG-AAVWGGANTFN---RLMRYAH-PQVKLIDFSPG-EKYLVTYSSHEPSNPRDA 282 (712)
Q Consensus 217 ~~v~~Sp--dg~~-lat~~-----~~~-i~iw~~~~~~~---~~~~~~~-~~v~~i~~Spd-g~~l~t~s~d~~~~~~~~ 282 (712)
.+++||| .+++ +|++. +.| +.|-+.. ..+ ....+.. .++..++||++ ...+++++.|
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~-~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GD-------- 82 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVT-DPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGD-------- 82 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecC-CCCCeEEEEeeecccceeEeeecCCCcceEEEEecC--------
Confidence 5689999 3443 22222 233 5676664 233 3334443 45999999996 5788899999
Q ss_pred CccEEEEEEcc-CCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccc
Q 005140 283 NRVVINIFDVR-TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKV 360 (712)
Q Consensus 283 ~~~~I~iwd~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~ 360 (712)
|+++|||+. ...+++.++.|...+. ++.|++.++..+++++ |++|++|+....+.+.....|.
T Consensus 83 --GSLrl~d~~~~s~Pi~~~kEH~~EV~-------------Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~ 147 (311)
T KOG0277|consen 83 --GSLRLFDLTMPSKPIHKFKEHKREVY-------------SVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHN 147 (311)
T ss_pred --ceEEEeccCCCCcchhHHHhhhhheE-------------EeccccccceeEEeeccCCceEeecCCCCcceEeecCCc
Confidence 999999963 2357899999988873 5788773444566667 9999999998777776666777
Q ss_pred cCeeeEEECCC-CCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccccc
Q 005140 361 ENVMDFSWSPT-DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTY 439 (712)
Q Consensus 361 ~~v~~~~~sp~-~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~ 439 (712)
.-|....|||. .+.+++ +++|+..++|.+
T Consensus 148 ~~Iy~a~~sp~~~nlfas-----~Sgd~~l~lwdv--------------------------------------------- 177 (311)
T KOG0277|consen 148 SCIYQAAFSPHIPNLFAS-----ASGDGTLRLWDV--------------------------------------------- 177 (311)
T ss_pred cEEEEEecCCCCCCeEEE-----ccCCceEEEEEe---------------------------------------------
Confidence 77888888886 455565 566666555543
Q ss_pred ccEEEEEEecCCcceeEEEecCCCCceEEEEEee-CCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--cee
Q 005140 440 TGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QAN 516 (712)
Q Consensus 440 ~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~ 516 (712)
+..+.+ +.++.|...|.++.|+. +-..+++++.|+ .|+.||++.... ++..+.+| .|.
T Consensus 178 --------r~~gk~---~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~---~vr~wDir~~r~-----pl~eL~gh~~AVR 238 (311)
T KOG0277|consen 178 --------RSPGKF---MSIEAHNSEILCCDWSKYNHNVLATGGVDN---LVRGWDIRNLRT-----PLFELNGHGLAVR 238 (311)
T ss_pred --------cCCCce---eEEEeccceeEeecccccCCcEEEecCCCc---eEEEEehhhccc-----cceeecCCceEEE
Confidence 333222 22456788999999998 455667777788 999999987553 56777666 689
Q ss_pred EEEEccCC-CeEEEEeccCCCceEEEEECCcceee-e--eccccceeeEEECC-CCCEEEEEEccceeccccEEEEEe
Q 005140 517 ALFWSPSG-RFIVLAGLKGFNGQLEFYNVDELETM-A--TAEHFMATDVEWDP-TGRYVATAVTSVHEMENGFNIWSF 589 (712)
Q Consensus 517 ~l~~spdg-~~l~~~~~~~~dg~v~iwd~~~~~~~-~--~~~~~~v~~~~~sp-dg~~l~t~s~~~~~~d~~v~iw~~ 589 (712)
.+.|||.. ..|+++++ |-+++|||.....-. . ..|..-+..+.||+ ++.++|+++- |..++||+.
T Consensus 239 kvk~Sph~~~lLaSasY---DmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gW-----De~l~Vw~p 308 (311)
T KOG0277|consen 239 KVKFSPHHASLLASASY---DMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGW-----DELLYVWNP 308 (311)
T ss_pred EEecCcchhhHhhhccc---cceEEecccccchhhhhhhhccceEEeccccccccCceeeeccc-----ccceeeecc
Confidence 99999975 57788888 999999998843322 2 25557788899998 5679999999 999999984
No 86
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.89 E-value=7.4e-22 Score=186.78 Aligned_cols=300 Identities=15% Similarity=0.269 Sum_probs=220.3
Q ss_pred CcceeeeecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcC
Q 005140 244 TFNRLMRYAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWP 322 (712)
Q Consensus 244 ~~~~~~~~~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (712)
..+.+..+.|++ |.++... +++|++|+.| |.++|||. .|+....+.+|...+.
T Consensus 95 aP~pl~~~~hdDWVSsv~~~--~~~IltgsYD----------g~~riWd~-~Gk~~~~~~Ght~~ik------------- 148 (423)
T KOG0313|consen 95 APKPLQCFLHDDWVSSVKGA--SKWILTGSYD----------GTSRIWDL-KGKSIKTIVGHTGPIK------------- 148 (423)
T ss_pred CCCccccccchhhhhhhccc--CceEEEeecC----------CeeEEEec-CCceEEEEecCCccee-------------
Confidence 334455555666 8888887 7899999999 99999995 8999999999988762
Q ss_pred eEEecCCC--CCEEEEec-CCeEEEEEcCCceec----ccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEe
Q 005140 323 VFRWGGGK--DKYFAKLG-KNMISVYETESFTLI----DKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQ 395 (712)
Q Consensus 323 ~~~~s~~d--g~~la~~~-d~~i~iwd~~~~~~~----~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~ 395 (712)
.+.|--.+ ...|++++ |.++++|..+.+... .....|...|.+++..++|..+++ ++.|..+.||...
T Consensus 149 ~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~S-----gS~D~~lkiWs~~ 223 (423)
T KOG0313|consen 149 SVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCS-----GSWDTMLKIWSVE 223 (423)
T ss_pred eeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEe-----ecccceeeecccC
Confidence 35553302 23578888 999999998866532 223478888999999999999999 8899999988732
Q ss_pred cCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCC
Q 005140 396 IPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG 475 (712)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g 475 (712)
......+...+. -+.++ .+ .....+.....+.+.+|..+|.++.|++ .
T Consensus 224 ~~~~~~~E~~s~----------~rrk~---------~~------------~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~ 271 (423)
T KOG0313|consen 224 TDEEDELESSSN----------RRRKK---------QK------------REKEGGTRTPLVTLEGHTEPVSSVVWSD-A 271 (423)
T ss_pred CCccccccccch----------hhhhh---------hh------------hhhcccccCceEEecccccceeeEEEcC-C
Confidence 211111110000 00000 00 0001112233467889999999999998 6
Q ss_pred CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEe-CCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcc--eeee-
Q 005140 476 HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL-KGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL--ETMA- 551 (712)
Q Consensus 476 ~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~-~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~--~~~~- 551 (712)
..+++++.|. +|+.||+.++.. +.++ .+...+++..+|..++|++|+. |..+++||.+++ ..+.
T Consensus 272 ~v~yS~SwDH---TIk~WDletg~~------~~~~~~~ksl~~i~~~~~~~Ll~~gss---dr~irl~DPR~~~gs~v~~ 339 (423)
T KOG0313|consen 272 TVIYSVSWDH---TIKVWDLETGGL------KSTLTTNKSLNCISYSPLSKLLASGSS---DRHIRLWDPRTGDGSVVSQ 339 (423)
T ss_pred CceEeecccc---eEEEEEeecccc------eeeeecCcceeEeecccccceeeecCC---CCceeecCCCCCCCceeEE
Confidence 7788899999 999999988763 3333 3568899999999999999998 999999999853 3332
Q ss_pred --eccccceeeEEECCCCCE-EEEEEccceeccccEEEEEecC--ceeeee--cccceeeeEEecCCCCCCChhhHHHHH
Q 005140 552 --TAEHFMATDVEWDPTGRY-VATAVTSVHEMENGFNIWSFNG--KLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 552 --~~~~~~v~~~~~spdg~~-l~t~s~~~~~~d~~v~iw~~~g--~~~~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
.+|..-|.++.|+|...| |++++. ||++++||+.. ..++.+ |.+.|.++.|.. +..++|++.|.+|+
T Consensus 340 s~~gH~nwVssvkwsp~~~~~~~S~S~-----D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~ 413 (423)
T KOG0313|consen 340 SLIGHKNWVSSVKWSPTNEFQLVSGSY-----DNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLR 413 (423)
T ss_pred eeecchhhhhheecCCCCceEEEEEec-----CCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceEE
Confidence 378889999999998876 566667 99999999873 256655 668999999985 56799999998876
No 87
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.89 E-value=1.5e-22 Score=188.70 Aligned_cols=266 Identities=12% Similarity=0.218 Sum_probs=209.2
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCE
Q 005140 254 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 333 (712)
Q Consensus 254 ~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ 333 (712)
.+|.|+.+ |...+++|..| .+|+|||..+-.+++.+.+|.+.+. |+++ +.+.
T Consensus 198 kgVYClQY--DD~kiVSGlrD----------nTikiWD~n~~~c~~~L~GHtGSVL-------------CLqy---d~rv 249 (499)
T KOG0281|consen 198 KGVYCLQY--DDEKIVSGLRD----------NTIKIWDKNSLECLKILTGHTGSVL-------------CLQY---DERV 249 (499)
T ss_pred CceEEEEe--cchhhhccccc----------CceEEeccccHHHHHhhhcCCCcEE-------------eeec---cceE
Confidence 35889888 56779999999 9999999989999999999999873 4544 7789
Q ss_pred EEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeee-eeeec
Q 005140 334 FAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKN-LFSVS 411 (712)
Q Consensus 334 la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~ 411 (712)
|++++ |.+|+|||.++++.+.....|.+.|..+.|+. .++++ ++.|.++.||.+..|+...+...- .+...
T Consensus 250 iisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvt-----cSkDrsiaVWdm~sps~it~rrVLvGHrAa 322 (499)
T KOG0281|consen 250 IVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVT-----CSKDRSIAVWDMASPTDITLRRVLVGHRAA 322 (499)
T ss_pred EEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEE-----ecCCceeEEEeccCchHHHHHHHHhhhhhh
Confidence 99998 99999999999999988888889999999974 67777 889999999999888744322211 11111
Q ss_pred ceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEE
Q 005140 412 DCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDIS 491 (712)
Q Consensus 412 ~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~ 491 (712)
...+ .-+.+++++++.+.+ +++|++.... ...++.+|...|-|+.+ .|+++++|+.|. +|+
T Consensus 323 VNvV--dfd~kyIVsASgDRT---------ikvW~~st~e---fvRtl~gHkRGIAClQY--r~rlvVSGSSDn---tIR 383 (499)
T KOG0281|consen 323 VNVV--DFDDKYIVSASGDRT---------IKVWSTSTCE---FVRTLNGHKRGIACLQY--RDRLVVSGSSDN---TIR 383 (499)
T ss_pred eeee--ccccceEEEecCCce---------EEEEecccee---eehhhhcccccceehhc--cCeEEEecCCCc---eEE
Confidence 1112 345679999999988 7888876532 22457789999988876 688999999998 999
Q ss_pred EEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceee---------e--eccccce
Q 005140 492 FYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETM---------A--TAEHFMA 558 (712)
Q Consensus 492 i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~---------~--~~~~~~v 558 (712)
+||+..|. .+..+.+| -|.++.| |.+.+++|++ ||+|++||+..+..- . ..|.+.|
T Consensus 384 lwdi~~G~------cLRvLeGHEeLvRciRF--d~krIVSGaY---DGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRV 452 (499)
T KOG0281|consen 384 LWDIECGA------CLRVLEGHEELVRCIRF--DNKRIVSGAY---DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRV 452 (499)
T ss_pred EEeccccH------HHHHHhchHHhhhheee--cCceeeeccc---cceEEEEecccccCCcccccchHHHhhhhcccee
Confidence 99998766 66677777 4788888 5689999999 999999999854321 1 1455788
Q ss_pred eeEEECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 559 TDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 559 ~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
..+.|+ ...|++++. |.+|.|||+..
T Consensus 453 FrLQFD--~fqIvsssH-----ddtILiWdFl~ 478 (499)
T KOG0281|consen 453 FRLQFD--EFQIISSSH-----DDTILIWDFLN 478 (499)
T ss_pred EEEeec--ceEEEeccC-----CCeEEEEEcCC
Confidence 888886 467888888 89999999863
No 88
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=7.2e-20 Score=185.81 Aligned_cols=438 Identities=14% Similarity=0.149 Sum_probs=268.4
Q ss_pred EEEEEeecccccccCCCCCCCCCCCCCCCCCccchhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccce
Q 005140 139 IFAVNMFDDFDKFMKVPDEWAPPEHKPYTPGENLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESF 218 (712)
Q Consensus 139 ~l~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~ 218 (712)
.+.+.+....-++-++...|-....-...+.+.+...+..+.+| ++....++.+.-|+. ...++...+.....++.+
T Consensus 39 ~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~R--LFS~g~sg~i~EwDl-~~lk~~~~~d~~gg~IWs 115 (691)
T KOG2048|consen 39 QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGR--LFSSGLSGSITEWDL-HTLKQKYNIDSNGGAIWS 115 (691)
T ss_pred ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCe--EEeecCCceEEEEec-ccCceeEEecCCCcceeE
Confidence 34555544444444555455443333322323333222223333 344455777889999 577888888888899999
Q ss_pred EEEcCCCcEEEEEecCceE-EeecccCcceeeee----cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc
Q 005140 219 VQWSPLGTYLATVHRQGAA-VWGGANTFNRLMRY----AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR 293 (712)
Q Consensus 219 v~~Spdg~~lat~~~~~i~-iw~~~~~~~~~~~~----~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~ 293 (712)
++.+|.++.++.|+.+|+. +.++. ........ ....|.+++|+|++..|++|+.| |.|++||+.
T Consensus 116 iai~p~~~~l~IgcddGvl~~~s~~-p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D----------g~Iriwd~~ 184 (691)
T KOG2048|consen 116 IAINPENTILAIGCDDGVLYDFSIG-PDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID----------GVIRIWDVK 184 (691)
T ss_pred EEeCCccceEEeecCCceEEEEecC-CceEEEEeecccccceEEEEEecCCccEEEecccC----------ceEEEEEcC
Confidence 9999999999999999943 55555 33332222 23459999999999999999999 999999999
Q ss_pred CCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCC
Q 005140 294 TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTD 372 (712)
Q Consensus 294 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~ 372 (712)
++..+.......+.. ..+-..+.|. +.+-. ++ .|+++. .|+|.+||...+.++.....|...|.+++.++++
T Consensus 185 ~~~t~~~~~~~~d~l----~k~~~~iVWS-v~~Lr-d~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~ 257 (691)
T KOG2048|consen 185 SGQTLHIITMQLDRL----SKREPTIVWS-VLFLR-DS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNE 257 (691)
T ss_pred CCceEEEeeeccccc----ccCCceEEEE-EEEee-cC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCC
Confidence 998877332221111 1112224464 55555 55 456666 9999999999999999999999999999999999
Q ss_pred CeEEEEeecCCCCCCCeEEEEEecCCcc--ce--eeeeeeeecceeEEECcC-----CC--EEEEEEccccc--------
Q 005140 373 PIISLFVPELGGGNQPARVSLVQIPSKE--EL--RQKNLFSVSDCKMYWQSS-----GD--YLAVKVDRYTK-------- 433 (712)
Q Consensus 373 ~~la~~~~~~~~~~~~~~i~~~~~~~~~--~~--~~~~~~~~~~~~~~~s~~-----g~--~l~~~~~~~~~-------- 433 (712)
..+.+ +|.|.. |..|.....+ .+ ....++..+..+++..++ |. .|++......+
T Consensus 258 d~vfs-----aGvd~~--ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~ 330 (691)
T KOG2048|consen 258 DRVFS-----AGVDPK--IIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHRQKN 330 (691)
T ss_pred CeEEE-----ccCCCc--eEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEccccccCchhhhccc
Confidence 99988 555554 4444433221 11 111111111111111111 11 11111111100
Q ss_pred ----------ccc------cccccEEEEEEecCC-------cceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeE
Q 005140 434 ----------TKK------STYTGFELFRIKERD-------IPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDI 490 (712)
Q Consensus 434 ----------~~~------~~~~~~~l~~l~~~~-------~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v 490 (712)
... -....+.+|++...- .....+.+ .....|.+.+.||+|+.||++.-. .+
T Consensus 331 ~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~-k~~~nIs~~aiSPdg~~Ia~st~~----~~ 405 (691)
T KOG2048|consen 331 LFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFT-KEKENISCAAISPDGNLIAISTVS----RT 405 (691)
T ss_pred cccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeec-CCccceeeeccCCCCCEEEEeecc----ce
Confidence 000 001224455554320 01112222 234578899999999999998763 58
Q ss_pred EEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcc--eeee----eccccceeeEE
Q 005140 491 SFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL--ETMA----TAEHFMATDVE 562 (712)
Q Consensus 491 ~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~--~~~~----~~~~~~v~~~~ 562 (712)
+||.++... ..+...+...+ ...+..+.|+-|+..++.++. ....+.++++.+. +.+. +.....|+.+.
T Consensus 406 ~iy~L~~~~-~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~--~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~ 482 (691)
T KOG2048|consen 406 KIYRLQPDP-NVKVINVDDVPLALLDASAISFTIDKNKLFLVSK--NIFSLEEFELETPSFKELKSIQSQAKCPSISRLV 482 (691)
T ss_pred EEEEeccCc-ceeEEEeccchhhhccceeeEEEecCceEEEEec--ccceeEEEEecCcchhhhhccccccCCCcceeEE
Confidence 899886432 11112222222 125678999999988888872 1788888887743 2222 23457889999
Q ss_pred ECCCCCEEEEEEccceeccccEEEEEecCceeeee---cccceeeeEEecCC-CCCCCh
Q 005140 563 WDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRT---LKDHFFQFLWRPRP-PSFLTP 617 (712)
Q Consensus 563 ~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~---~~~~i~~~~w~p~~-~~l~s~ 617 (712)
.||+|.|||+.+. .+.|.+|++.+...... ....++..+++|.. +.|+.+
T Consensus 483 ~SsdG~yiaa~~t-----~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvva 536 (691)
T KOG2048|consen 483 VSSDGNYIAAIST-----RGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVA 536 (691)
T ss_pred EcCCCCEEEEEec-----cceEEEEEcccceeecchhccCcceeeeeccccccCcEEEE
Confidence 9999999999999 89999999987644433 23678888888543 344433
No 89
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=3.7e-20 Score=189.12 Aligned_cols=282 Identities=13% Similarity=0.173 Sum_probs=191.2
Q ss_pred CcEEEEEecCc-eEEeecccCcceeeeec-CCCeeEEEecCCCCEE-EEEcCCCCCCCcCCCccEEEEEEccCCceeeec
Q 005140 225 GTYLATVHRQG-AAVWGGANTFNRLMRYA-HPQVKLIDFSPGEKYL-VTYSSHEPSNPRDANRVVINIFDVRTGKVMRDF 301 (712)
Q Consensus 225 g~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~~v~~i~~Spdg~~l-~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~ 301 (712)
+..+++++.++ +.+||.. +.+.+..+. +..+.+++|+|+|+++ ++++.+ +.|++||+.+++.++.+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~-t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~----------~~v~~~d~~~~~~~~~~ 69 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTA-TLEVTRTFPVGQRPRGITLSKDGKLLYVCASDS----------DTIQVIDLATGEVIGTL 69 (300)
T ss_pred CcEEEEecCCCEEEEEECC-CCceEEEEECCCCCCceEECCCCCEEEEEECCC----------CeEEEEECCCCcEEEec
Confidence 35678888888 8899998 677766665 4458889999999987 455666 78999999999888777
Q ss_pred cCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEe-c-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEe
Q 005140 302 KGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKL-G-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFV 379 (712)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~-~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~ 379 (712)
..+.... .+.|+| ++++++.+ . ++.|.+||+.+...+..... ...+.+++|+|+|..+++
T Consensus 70 ~~~~~~~--------------~~~~~~-~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~-- 131 (300)
T TIGR03866 70 PSGPDPE--------------LFALHP-NGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVN-- 131 (300)
T ss_pred cCCCCcc--------------EEEECC-CCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEE--
Confidence 6544333 588999 99977554 4 89999999987765543321 123577889999888876
Q ss_pred ecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEe
Q 005140 380 PELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL 459 (712)
Q Consensus 380 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 459 (712)
++.+.. .+..|+..+.. .+ .....
T Consensus 132 ---~~~~~~-~~~~~d~~~~~----------------------~~------------------------------~~~~~ 155 (300)
T TIGR03866 132 ---TSETTN-MAHFIDTKTYE----------------------IV------------------------------DNVLV 155 (300)
T ss_pred ---EecCCC-eEEEEeCCCCe----------------------EE------------------------------EEEEc
Confidence 322221 12222221110 00 00001
Q ss_pred cCCCCceEEEEEeeCCCEEEEEEc-CCCCCeEEEEEeecccccCceeEEEEeC--C-----C--ceeEEEEccCCCeEEE
Q 005140 460 DNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDISFYSMRTAQHAGRVSKLTTLK--G-----K--QANALFWSPSGRFIVL 529 (712)
Q Consensus 460 ~~h~~~v~~~~~sp~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~-----~--~v~~l~~spdg~~l~~ 529 (712)
...+.+++|+|+|++|++++. ++ .|.+||+.++.. +..+. . . ....++|+|+|+++++
T Consensus 156 ---~~~~~~~~~s~dg~~l~~~~~~~~---~v~i~d~~~~~~------~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~ 223 (300)
T TIGR03866 156 ---DQRPRFAEFTADGKELWVSSEIGG---TVSVIDVATRKV------IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFV 223 (300)
T ss_pred ---CCCccEEEECCCCCEEEEEcCCCC---EEEEEEcCccee------eeeeeecccccccccCCccceEECCCCCEEEE
Confidence 233467899999998876654 66 899999976542 22211 0 1 2346889999998766
Q ss_pred EeccCCCceEEEEECCcceeeee-ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCc-eeeeec-ccceeeeE
Q 005140 530 AGLKGFNGQLEFYNVDELETMAT-AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK-LLYRTL-KDHFFQFL 606 (712)
Q Consensus 530 ~~~~~~dg~v~iwd~~~~~~~~~-~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~-~~~~~~-~~~i~~~~ 606 (712)
+..+ ++.+.+||..+++.+.. .+...+.+++|+|+|++|+++... ++.+.+||+.+. .+.... ....+.++
T Consensus 224 ~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~----~~~i~v~d~~~~~~~~~~~~~~~~~~~~ 297 (300)
T TIGR03866 224 ALGP--ANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGV----SNDVSVIDVAALKVIKSIKVGRLPWGVV 297 (300)
T ss_pred EcCC--CCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCC----CCeEEEEECCCCcEEEEEEcccccceeE
Confidence 5421 56899999998887654 344578899999999999887532 799999999854 334332 24567777
Q ss_pred Eec
Q 005140 607 WRP 609 (712)
Q Consensus 607 w~p 609 (712)
++|
T Consensus 298 ~~~ 300 (300)
T TIGR03866 298 VRP 300 (300)
T ss_pred eCC
Confidence 765
No 90
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=8.8e-21 Score=192.55 Aligned_cols=386 Identities=17% Similarity=0.216 Sum_probs=245.6
Q ss_pred EEECCeeEEEecCC-CCCCCcccccCCCcccceEEEcCCCc---EEEEEecCc-eEEeecccCc----------------
Q 005140 187 IRSGTDTEVLWNDA-RHLKPEPVYKRSYWTESFVQWSPLGT---YLATVHRQG-AAVWGGANTF---------------- 245 (712)
Q Consensus 187 ~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~v~~v~~Spdg~---~lat~~~~~-i~iw~~~~~~---------------- 245 (712)
++..+..+.++... .+......+.+|..-|.+++|+..|. +||+++.|. |+||.+.-..
T Consensus 164 ~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~ 243 (764)
T KOG1063|consen 164 CGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSN 243 (764)
T ss_pred ecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccC
Confidence 33334444455442 23355667899999999999997655 899999998 8899653111
Q ss_pred ----cee--ee---------ecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC--ceeeeccCCCcc
Q 005140 246 ----NRL--MR---------YAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG--KVMRDFKGSADE 307 (712)
Q Consensus 246 ----~~~--~~---------~~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g--~~~~~~~~~~~~ 307 (712)
... .+ ..|.+ |.++.|+|.+..|++++.| .++.+|...+. --+......
T Consensus 244 ~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaD----------ksmiiW~pd~~tGiWv~~vRlG--- 310 (764)
T KOG1063|consen 244 LPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASAD----------KSMIIWKPDENTGIWVDVVRLG--- 310 (764)
T ss_pred CceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccC----------cceEEEecCCccceEEEEEEee---
Confidence 001 01 13665 9999999999999999999 89999986433 222222111
Q ss_pred cccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCC---ceecccccccccCeeeEEECCCCCeEEEEeecCC
Q 005140 308 FAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETES---FTLIDKKSLKVENVMDFSWSPTDPIISLFVPELG 383 (712)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~---~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~ 383 (712)
+.++..+--| ...|+| ++..+++-+ .|..++|.... .......+.|..+|.+++|+|.|.+|++ .
T Consensus 311 ----e~gg~a~GF~-g~lw~~-n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLs-----v 379 (764)
T KOG1063|consen 311 ----EVGGSAGGFW-GGLWSP-NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLS-----V 379 (764)
T ss_pred ----ccccccccee-eEEEcC-CCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEE-----e
Confidence 1111111114 478999 999888888 99999998332 1234455689999999999999999999 7
Q ss_pred CCCCCeEEEEEecC--CccceeeeeeeeecceeEEECcCCCEEEEEEcccc-----------------------------
Q 005140 384 GGNQPARVSLVQIP--SKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYT----------------------------- 432 (712)
Q Consensus 384 ~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~----------------------------- 432 (712)
|.|++.|++---.. +..++.....+..+..++.+-+....++.+.+...
T Consensus 380 s~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p 459 (764)
T KOG1063|consen 380 SLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELP 459 (764)
T ss_pred ccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcc
Confidence 88888887542211 11223333333322222332221112222211110
Q ss_pred ---------cccccccc-----c---EEEEEEecCC-------cc-----------eeEEEecCCCCceEEEEEeeCCCE
Q 005140 433 ---------KTKKSTYT-----G---FELFRIKERD-------IP-----------IEVLELDNKNDKIIAFAWEPKGHR 477 (712)
Q Consensus 433 ---------~~~~~~~~-----~---~~l~~l~~~~-------~~-----------~~~~~l~~h~~~v~~~~~sp~g~~ 477 (712)
.+.+..+. + ..-+...... .| .+...+.||...|.+++.+|+|+.
T Consensus 460 ~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnl 539 (764)
T KOG1063|consen 460 DGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNL 539 (764)
T ss_pred cccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCE
Confidence 00111110 0 0001110000 00 011234589999999999999999
Q ss_pred EEEEEcCCC--CCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceee---
Q 005140 478 FAVIHGDSP--RPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETM--- 550 (712)
Q Consensus 478 l~~~~~d~~--~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~--- 550 (712)
+|++..... ...|++|+..+-. ....+.+| .|+.++|||||++|++++. |.++.+|........
T Consensus 540 iASaCKS~~~ehAvI~lw~t~~W~------~~~~L~~HsLTVT~l~FSpdg~~LLsvsR---DRt~sl~~~~~~~~~e~~ 610 (764)
T KOG1063|consen 540 IASACKSSLKEHAVIRLWNTANWL------QVQELEGHSLTVTRLAFSPDGRYLLSVSR---DRTVSLYEVQEDIKDEFR 610 (764)
T ss_pred EeehhhhCCccceEEEEEeccchh------hhheecccceEEEEEEECCCCcEEEEeec---CceEEeeeeecccchhhh
Confidence 999876432 2368899875432 44566666 5899999999999999998 999999987632221
Q ss_pred ---eeccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCc---eeee----ecccceeeeEEecC
Q 005140 551 ---ATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK---LLYR----TLKDHFFQFLWRPR 610 (712)
Q Consensus 551 ---~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~---~~~~----~~~~~i~~~~w~p~ 610 (712)
.+.|..-|.++.|+|++++++|+|. |..|++|..... .+.. .....|+.++|.|-
T Consensus 611 fa~~k~HtRIIWdcsW~pde~~FaTaSR-----DK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~ 675 (764)
T KOG1063|consen 611 FACLKAHTRIIWDCSWSPDEKYFATASR-----DKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPV 675 (764)
T ss_pred hccccccceEEEEcccCcccceeEEecC-----CceEEEEeccCchhhhhhhhchhccCCceeeEEeecc
Confidence 2367788999999999999999999 999999998643 2222 13467888888874
No 91
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.89 E-value=1e-21 Score=180.63 Aligned_cols=284 Identities=12% Similarity=0.194 Sum_probs=210.2
Q ss_pred ccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCc------------------ceeeee-cC-CCeeEEEecCCC
Q 005140 207 PVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTF------------------NRLMRY-AH-PQVKLIDFSPGE 265 (712)
Q Consensus 207 ~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~------------------~~~~~~-~~-~~v~~i~~Spdg 265 (712)
..++.|..++++.+|||||.++|||+.|. |+|.|++ .. ..+.++ .| ..|+++.|+|..
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildve-rmlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVE-RMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehh-hhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 35688999999999999999999999998 8899875 11 122333 23 359999999999
Q ss_pred CEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEE
Q 005140 266 KYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISV 344 (712)
Q Consensus 266 ~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~i 344 (712)
..|++++.| ++|++||...-...+.++.-.... .+. ++.|.| .|.+|+.+. -.++++
T Consensus 185 ~ILiS~srD----------~tvKlFDfsK~saKrA~K~~qd~~------~vr-----siSfHP-sGefllvgTdHp~~rl 242 (430)
T KOG0640|consen 185 TILISGSRD----------NTVKLFDFSKTSAKRAFKVFQDTE------PVR-----SISFHP-SGEFLLVGTDHPTLRL 242 (430)
T ss_pred heEEeccCC----------CeEEEEecccHHHHHHHHHhhccc------eee-----eEeecC-CCceEEEecCCCceeE
Confidence 999999999 999999986544333333221111 111 689999 999999999 678999
Q ss_pred EEcCCceeccc---ccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCC
Q 005140 345 YETESFTLIDK---KSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSG 421 (712)
Q Consensus 345 wd~~~~~~~~~---~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 421 (712)
||+++.+.... ...|.+.|+++.+|+.++..++ ++.|+.+++| +.-+.+.+...
T Consensus 243 Ydv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvT-----aSkDG~Iklw--DGVS~rCv~t~---------------- 299 (430)
T KOG0640|consen 243 YDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVT-----ASKDGAIKLW--DGVSNRCVRTI---------------- 299 (430)
T ss_pred EeccceeEeeecCcccccccceeEEEecCCccEEEE-----eccCCcEEee--ccccHHHHHHH----------------
Confidence 99998775432 2346677999999999998888 7777776654 32222211110
Q ss_pred CEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCC-CCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccc
Q 005140 422 DYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNK-NDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQH 500 (712)
Q Consensus 422 ~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h-~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~ 500 (712)
. .+| ...|.+..|..+|+|+++.+.|. .+++|.+.++.
T Consensus 300 ------------------------------------~-~AH~gsevcSa~Ftkn~kyiLsSG~DS---~vkLWEi~t~R- 338 (430)
T KOG0640|consen 300 ------------------------------------G-NAHGGSEVCSAVFTKNGKYILSSGKDS---TVKLWEISTGR- 338 (430)
T ss_pred ------------------------------------H-hhcCCceeeeEEEccCCeEEeecCCcc---eeeeeeecCCc-
Confidence 0 023 34688889999999999999999 99999997765
Q ss_pred cCceeEEEEeCCC-------ceeEEEEccCCCeEEEEeccCCCceEEEEECCccee---eeeccccceeeEEECCCCCEE
Q 005140 501 AGRVSKLTTLKGK-------QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET---MATAEHFMATDVEWDPTGRYV 570 (712)
Q Consensus 501 ~~~~~~~~~~~~~-------~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~---~~~~~~~~v~~~~~spdg~~l 570 (712)
.+..+.+. ..+...|+....|+++-.. ..+.+.-||.++... +..+|.+.+..+.-||.+.-+
T Consensus 339 -----~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDE--as~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~F 411 (430)
T KOG0640|consen 339 -----MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDE--ASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAF 411 (430)
T ss_pred -----eEEEEecCCcccchhhhhhhhhcCccceEEcccc--ccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCce
Confidence 44444322 1355677877888877653 257899999987554 445889999999999999999
Q ss_pred EEEEccceeccccEEEEEe
Q 005140 571 ATAVTSVHEMENGFNIWSF 589 (712)
Q Consensus 571 ~t~s~~~~~~d~~v~iw~~ 589 (712)
++++. |...++|--
T Consensus 412 mTcsd-----D~raRFWyr 425 (430)
T KOG0640|consen 412 MTCSD-----DFRARFWYR 425 (430)
T ss_pred eeecc-----cceeeeeee
Confidence 99999 999999953
No 92
>PTZ00420 coronin; Provisional
Probab=99.89 E-value=6e-21 Score=202.89 Aligned_cols=251 Identities=14% Similarity=0.199 Sum_probs=168.4
Q ss_pred eeEEEecCCCCCCCcccccCCCcccceEEEcCC-CcEEEEEecCc-eEEeecccCcc-------eeeee-cCC-CeeEEE
Q 005140 192 DTEVLWNDARHLKPEPVYKRSYWTESFVQWSPL-GTYLATVHRQG-AAVWGGANTFN-------RLMRY-AHP-QVKLID 260 (712)
Q Consensus 192 ~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spd-g~~lat~~~~~-i~iw~~~~~~~-------~~~~~-~~~-~v~~i~ 260 (712)
+++.+|+.. ...+...+.+|...|.+++|+|+ +.+||+++.|+ |+||++..... .+..+ .|. .|.+++
T Consensus 54 gvI~L~~~~-r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVa 132 (568)
T PTZ00420 54 GAIRLENQM-RKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIID 132 (568)
T ss_pred eEEEeeecC-CCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEE
Confidence 456688874 34566778999999999999997 89999999999 88999872221 12222 244 599999
Q ss_pred ecCCCCEE-EEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-
Q 005140 261 FSPGEKYL-VTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG- 338 (712)
Q Consensus 261 ~Spdg~~l-~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~- 338 (712)
|+|++.++ ++++.| ++|+|||+.+++.+..+..+ ..+. +++|+| +|.+|++++
T Consensus 133 f~P~g~~iLaSgS~D----------gtIrIWDl~tg~~~~~i~~~-~~V~-------------Slswsp-dG~lLat~s~ 187 (568)
T PTZ00420 133 WNPMNYYIMCSSGFD----------SFVNIWDIENEKRAFQINMP-KKLS-------------SLKWNI-KGNLLSGTCV 187 (568)
T ss_pred ECCCCCeEEEEEeCC----------CeEEEEECCCCcEEEEEecC-CcEE-------------EEEECC-CCCEEEEEec
Confidence 99999765 688999 99999999999877776533 2221 799999 999999888
Q ss_pred CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEEC
Q 005140 339 KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQ 418 (712)
Q Consensus 339 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s 418 (712)
|+.|+|||+.++..+.....|...+....+. . ..|+
T Consensus 188 D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~-----------------------~---------------------~~fs 223 (568)
T PTZ00420 188 GKHMHIIDPRKQEIASSFHIHDGGKNTKNIW-----------------------I---------------------DGLG 223 (568)
T ss_pred CCEEEEEECCCCcEEEEEecccCCceeEEEE-----------------------e---------------------eeEc
Confidence 9999999999887665444444332211100 0 0123
Q ss_pred cCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecc
Q 005140 419 SSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTA 498 (712)
Q Consensus 419 ~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~ 498 (712)
+++.+|++++.+.. ....+.||+++..+.++....+..+.+.+..+..+++|.++++|.+|+ +|++|++..+
T Consensus 224 ~d~~~IlTtG~d~~-----~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~---tIr~~e~~~~ 295 (568)
T PTZ00420 224 GDDNYILSTGFSKN-----NMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG---NCRYYQHSLG 295 (568)
T ss_pred CCCCEEEEEEcCCC-----CccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC---eEEEEEccCC
Confidence 44444444333221 001256666665445554455544445444444456789999999999 9999999654
Q ss_pred cccCceeEEEEeC-CCceeEEEEccCC
Q 005140 499 QHAGRVSKLTTLK-GKQANALFWSPSG 524 (712)
Q Consensus 499 ~~~~~~~~~~~~~-~~~v~~l~~spdg 524 (712)
. +..+..+. ..+..+++|.|+-
T Consensus 296 ~----~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 296 S----IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred c----EEeecccccCCCccceEEcccc
Confidence 2 22344333 3367889999964
No 93
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=2.5e-21 Score=189.24 Aligned_cols=269 Identities=14% Similarity=0.206 Sum_probs=206.4
Q ss_pred CCCeeEEEecCCCCE-EEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC
Q 005140 253 HPQVKLIDFSPGEKY-LVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 331 (712)
Q Consensus 253 ~~~v~~i~~Spdg~~-l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg 331 (712)
|..|.+++|||...| +|+.+.- .+.||+..+...++++..-...+. ++.|.. ||
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~-----------rvqly~~~~~~~~k~~srFk~~v~-------------s~~fR~-DG 80 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSV-----------RVQLYSSVTRSVRKTFSRFKDVVY-------------SVDFRS-DG 80 (487)
T ss_pred cCcceeEecCCCCCCceEEeccc-----------EEEEEecchhhhhhhHHhhcccee-------------EEEeec-CC
Confidence 556999999997543 4444433 588999888777776665555442 688999 99
Q ss_pred CEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeee
Q 005140 332 KYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV 410 (712)
Q Consensus 332 ~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 410 (712)
+++|.|. .|.|+|||..+...+.....|..+|....|+|.++.+++. |+.+...++|
T Consensus 81 ~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s----~sDd~v~k~~------------------ 138 (487)
T KOG0310|consen 81 RLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVS----GSDDKVVKYW------------------ 138 (487)
T ss_pred eEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEe----cCCCceEEEE------------------
Confidence 9999999 9999999977766676777788889999999987776653 4444444433
Q ss_pred cceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeC-CCEEEEEEcCCCCCe
Q 005140 411 SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK-GHRFAVIHGDSPRPD 489 (712)
Q Consensus 411 ~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~-g~~l~~~~~d~~~~~ 489 (712)
++...- .+.++.+|.+.|.+.+|+|- ++.+++|+.|| .
T Consensus 139 -----------------------------------d~s~a~---v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg---~ 177 (487)
T KOG0310|consen 139 -----------------------------------DLSTAY---VQAELSGHTDYVRCGDISPANDHIVVTGSYDG---K 177 (487)
T ss_pred -----------------------------------EcCCcE---EEEEecCCcceeEeeccccCCCeEEEecCCCc---e
Confidence 332211 13567799999999999995 55788888899 9
Q ss_pred EEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCccee-eee--ccccceeeEEECC
Q 005140 490 ISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET-MAT--AEHFMATDVEWDP 565 (712)
Q Consensus 490 v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~-~~~--~~~~~v~~~~~sp 565 (712)
|++||++.... .+.++. +++|..+.+-|.|..+++++ ...|++||+.+|.+ +.. .|+..|||+.+..
T Consensus 178 vrl~DtR~~~~-----~v~elnhg~pVe~vl~lpsgs~iasAg----Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s 248 (487)
T KOG0310|consen 178 VRLWDTRSLTS-----RVVELNHGCPVESVLALPSGSLIASAG----GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS 248 (487)
T ss_pred EEEEEeccCCc-----eeEEecCCCceeeEEEcCCCCEEEEcC----CCeEEEEEecCCceehhhhhcccceEEEEEeec
Confidence 99999987542 566665 66999999999999999998 57999999995544 433 4889999999999
Q ss_pred CCCEEEEEEccceeccccEEEEEecCce-eeee-cccceeeeEEecCCCCCCChhhHHHH
Q 005140 566 TGRYVATAVTSVHEMENGFNIWSFNGKL-LYRT-LKDHFFQFLWRPRPPSFLTPEKEEEI 623 (712)
Q Consensus 566 dg~~l~t~s~~~~~~d~~v~iw~~~g~~-~~~~-~~~~i~~~~w~p~~~~l~s~~~d~~i 623 (712)
+++.|++++. |+.+++|++..-. ++.. -.++|.+++.+|++..++.+-.++.+
T Consensus 249 ~~~rLlS~sL-----D~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv 303 (487)
T KOG0310|consen 249 DSTRLLSGSL-----DRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLV 303 (487)
T ss_pred CCceEeeccc-----ccceEEEEccceEEEEeeecccceeeEEecCCCceEEEeccccee
Confidence 9999999999 9999999976433 3333 34899999999998877776655543
No 94
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.88 E-value=7.7e-21 Score=179.95 Aligned_cols=273 Identities=15% Similarity=0.278 Sum_probs=204.2
Q ss_pred hhccCCCCCceEEE-EECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCc---EEEEEecCc-eEEeecccCcce-
Q 005140 174 KWLTDEKARDQFVI-RSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGT---YLATVHRQG-AAVWGGANTFNR- 247 (712)
Q Consensus 174 ~~~~~~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~---~lat~~~~~-i~iw~~~~~~~~- 247 (712)
+|+..-++...+++ ++-|++..+|+. .++....+.+|..++.+++|--... .+++++.|. +.+|..+ ....
T Consensus 106 DWVSsv~~~~~~IltgsYDg~~riWd~--~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~-~~~~~ 182 (423)
T KOG0313|consen 106 DWVSSVKGASKWILTGSYDGTSRIWDL--KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWN-VGENK 182 (423)
T ss_pred hhhhhhcccCceEEEeecCCeeEEEec--CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEec-Cchhh
Confidence 67777776665554 445888999998 6888889999999999888854333 599999998 7799776 3332
Q ss_pred -----eeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc-------------------------CCce
Q 005140 248 -----LMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR-------------------------TGKV 297 (712)
Q Consensus 248 -----~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~-------------------------~g~~ 297 (712)
.++.|...|.+++..++|..+++|+.| .+|.||+.. ++.+
T Consensus 183 ~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D----------~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P 252 (423)
T KOG0313|consen 183 VKALKVCRGHKRSVDSVSVDSSGTRFCSGSWD----------TMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTP 252 (423)
T ss_pred hhHHhHhcccccceeEEEecCCCCeEEeeccc----------ceeeecccCCCccccccccchhhhhhhhhhhcccccCc
Confidence 222233459999999999999999999 899999931 1224
Q ss_pred eeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEE
Q 005140 298 MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIIS 376 (712)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la 376 (712)
+-++.+|...+. ++.|++ ...+.+++ |.+|+.||+.+++....+ .....+.+++.+|..+.|+
T Consensus 253 ~vtl~GHt~~Vs-------------~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~-~~~ksl~~i~~~~~~~Ll~ 316 (423)
T KOG0313|consen 253 LVTLEGHTEPVS-------------SVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTL-TTNKSLNCISYSPLSKLLA 316 (423)
T ss_pred eEEeccccccee-------------eEEEcC--CCceEeecccceEEEEEeecccceeee-ecCcceeEeecccccceee
Confidence 555667766653 688876 45566677 999999999998877554 2334588999999888888
Q ss_pred EEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeE
Q 005140 377 LFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEV 456 (712)
Q Consensus 377 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 456 (712)
+ |+.+...++|. -+..+..+..
T Consensus 317 ~-----gssdr~irl~D-----------------------------------------------------PR~~~gs~v~ 338 (423)
T KOG0313|consen 317 S-----GSSDRHIRLWD-----------------------------------------------------PRTGDGSVVS 338 (423)
T ss_pred e-----cCCCCceeecC-----------------------------------------------------CCCCCCceeE
Confidence 8 66666655433 2222222334
Q ss_pred EEecCCCCceEEEEEeeCC-CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEecc
Q 005140 457 LELDNKNDKIIAFAWEPKG-HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLK 533 (712)
Q Consensus 457 ~~l~~h~~~v~~~~~sp~g-~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~ 533 (712)
.++.+|+..|.++.|+|.. ..|++++.|+ ++++||+++... ++..+.+| .+.++.|+. |.+|++|+.
T Consensus 339 ~s~~gH~nwVssvkwsp~~~~~~~S~S~D~---t~klWDvRS~k~-----plydI~~h~DKvl~vdW~~-~~~IvSGGa- 408 (423)
T KOG0313|consen 339 QSLIGHKNWVSSVKWSPTNEFQLVSGSYDN---TVKLWDVRSTKA-----PLYDIAGHNDKVLSVDWNE-GGLIVSGGA- 408 (423)
T ss_pred EeeecchhhhhheecCCCCceEEEEEecCC---eEEEEEeccCCC-----cceeeccCCceEEEEeccC-CceEEeccC-
Confidence 5677999999999999954 5677888899 999999988665 67777766 688999974 668999998
Q ss_pred CCCceEEEEECC
Q 005140 534 GFNGQLEFYNVD 545 (712)
Q Consensus 534 ~~dg~v~iwd~~ 545 (712)
|.+|+|+...
T Consensus 409 --D~~l~i~~~~ 418 (423)
T KOG0313|consen 409 --DNKLRIFKGS 418 (423)
T ss_pred --cceEEEeccc
Confidence 9999998654
No 95
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=1.6e-22 Score=189.97 Aligned_cols=266 Identities=14% Similarity=0.203 Sum_probs=192.7
Q ss_pred eEEecCCCC-CEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc
Q 005140 323 VFRWGGGKD-KYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE 400 (712)
Q Consensus 323 ~~~~s~~dg-~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~ 400 (712)
+++=.| .. ..+++++ ||.|+|||+.....+.....|.+-|.++++.. ..+++ +|.|.+++.|.++.+-..
T Consensus 71 ~lakhp-~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~t-----vgdDKtvK~wk~~~~p~~ 142 (433)
T KOG0268|consen 71 CLAKHP-NKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFT-----VGDDKTVKQWKIDGPPLH 142 (433)
T ss_pred hhhcCc-chhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEE-----ecCCcceeeeeccCCcce
Confidence 566666 44 5678888 99999999998888877778888899999987 44555 678999999999886322
Q ss_pred ceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCC-CEEE
Q 005140 401 ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG-HRFA 479 (712)
Q Consensus 401 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g-~~l~ 479 (712)
.+...... ..+.-+..+..++++... +.||+.... .|+..++. ..+.|.++.|+|.- ..|+
T Consensus 143 tilg~s~~----~gIdh~~~~~~FaTcGe~-----------i~IWD~~R~-~Pv~smsw--G~Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 143 TILGKSVY----LGIDHHRKNSVFATCGEQ-----------IDIWDEQRD-NPVSSMSW--GADSISSVKFNPVETSILA 204 (433)
T ss_pred eeeccccc----cccccccccccccccCce-----------eeecccccC-Cccceeec--CCCceeEEecCCCcchhee
Confidence 22211110 011111222233333222 788987542 45444444 36789999999965 4566
Q ss_pred EEEcCCCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCccee---eeeccc
Q 005140 480 VIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET---MATAEH 555 (712)
Q Consensus 480 ~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~---~~~~~~ 555 (712)
++..|+ .|.+||+++.. +++.+. ....+.|+|+|.+-.+++|+. |..++.||+..... +...|.
T Consensus 205 s~~sDr---sIvLyD~R~~~------Pl~KVi~~mRTN~IswnPeafnF~~a~E---D~nlY~~DmR~l~~p~~v~~dhv 272 (433)
T KOG0268|consen 205 SCASDR---SIVLYDLRQAS------PLKKVILTMRTNTICWNPEAFNFVAANE---DHNLYTYDMRNLSRPLNVHKDHV 272 (433)
T ss_pred eeccCC---ceEEEecccCC------ccceeeeeccccceecCccccceeeccc---cccceehhhhhhcccchhhcccc
Confidence 666788 89999998766 444433 345689999997767777776 99999999985543 334777
Q ss_pred cceeeEEECCCCCEEEEEEccceeccccEEEEEecCce----eeeecccceeeeEEecCCCCCCChhhHHHHHHHHHHhh
Q 005140 556 FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKL----LYRTLKDHFFQFLWRPRPPSFLTPEKEEEIAKNLKKYS 631 (712)
Q Consensus 556 ~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~----~~~~~~~~i~~~~w~p~~~~l~s~~~d~~i~~~~~~~~ 631 (712)
..|.+++|||.|+-+++|+. |.+|+||..+... .++....+|.++.||.|.++++|+|+|+.||-|-...+
T Consensus 273 sAV~dVdfsptG~Efvsgsy-----DksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 273 SAVMDVDFSPTGQEFVSGSY-----DKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred eeEEEeccCCCcchhccccc-----cceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchh
Confidence 89999999999999999999 9999999987432 23446689999999999999999999999985544333
No 96
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.88 E-value=1.9e-21 Score=190.72 Aligned_cols=281 Identities=12% Similarity=0.272 Sum_probs=189.7
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc-eeeecc---CCCcccccCCCCCcCCCCcCeEEecCCC
Q 005140 255 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK-VMRDFK---GSADEFAVGGTGGVAGVSWPVFRWGGGK 330 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~d 330 (712)
.|..+++.|.|-.|++|+.| ..|++||+.... ..+.|+ ...... ..+++||+ .
T Consensus 169 ~Vsal~~Dp~GaR~~sGs~D----------y~v~~wDf~gMdas~~~fr~l~P~E~h~------------i~sl~ys~-T 225 (641)
T KOG0772|consen 169 IVSALAVDPSGARFVSGSLD----------YTVKFWDFQGMDASMRSFRQLQPCETHQ------------INSLQYSV-T 225 (641)
T ss_pred EEEEeeecCCCceeeecccc----------ceEEEEecccccccchhhhccCcccccc------------cceeeecC-C
Confidence 39999999999999999999 899999985432 122222 111111 11689999 8
Q ss_pred CCEEEEec-CCeEEEEEcCCceecc------------cccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecC
Q 005140 331 DKYFAKLG-KNMISVYETESFTLID------------KKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIP 397 (712)
Q Consensus 331 g~~la~~~-d~~i~iwd~~~~~~~~------------~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~ 397 (712)
|..|++.+ ....+|+|-....... ....|...+++-+
T Consensus 226 g~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~------------------------------ 275 (641)
T KOG0772|consen 226 GDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGC------------------------------ 275 (641)
T ss_pred CCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccc------------------------------
Confidence 87666655 8888999876443321 1112333344444
Q ss_pred CccceeeeeeeeecceeEEECcCCC-EEEEEEcccccccccccccEEEEEEecCCcceeEEE---ecCCCCceEEEEEee
Q 005140 398 SKEELRQKNLFSVSDCKMYWQSSGD-YLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLE---LDNKNDKIIAFAWEP 473 (712)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~s~~g~-~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~---l~~h~~~v~~~~~sp 473 (712)
|+|..+ .+++++.+++ +++|++.........+. ..+..-++++++|+|
T Consensus 276 -------------------whP~~k~~FlT~s~Dgt---------lRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr 327 (641)
T KOG0772|consen 276 -------------------WHPDNKEEFLTCSYDGT---------LRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR 327 (641)
T ss_pred -------------------cccCcccceEEecCCCc---------EEEEecCCchhheeEEeeccCCCcccCceeeecCC
Confidence 555443 3444444444 56666655433322222 123355788999999
Q ss_pred CCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEeccCCCceEEEEECCccee-e
Q 005140 474 KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET-M 550 (712)
Q Consensus 474 ~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~-~ 550 (712)
+|+.||++..|| .|.+|+..+.... ....+...+ +..|+++.||+||++|++-+. |+++++||++..+. +
T Consensus 328 dg~~iAagc~DG---SIQ~W~~~~~~v~-p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~---D~tLKvWDLrq~kkpL 400 (641)
T KOG0772|consen 328 DGKLIAAGCLDG---SIQIWDKGSRTVR-PVMKVKDAHLPGQDITSISFSYDGNYLLSRGF---DDTLKVWDLRQFKKPL 400 (641)
T ss_pred CcchhhhcccCC---ceeeeecCCcccc-cceEeeeccCCCCceeEEEeccccchhhhccC---CCceeeeeccccccch
Confidence 999999999999 9999998543221 112233322 347999999999999999988 99999999996543 3
Q ss_pred ee----ccccceeeEEECCCCCEEEEEEcc-ceeccccEEEEEec-Cceeeeec--ccceeeeEEecCCCCCCChhhHHH
Q 005140 551 AT----AEHFMATDVEWDPTGRYVATAVTS-VHEMENGFNIWSFN-GKLLYRTL--KDHFFQFLWRPRPPSFLTPEKEEE 622 (712)
Q Consensus 551 ~~----~~~~~v~~~~~spdg~~l~t~s~~-~~~~d~~v~iw~~~-g~~~~~~~--~~~i~~~~w~p~~~~l~s~~~d~~ 622 (712)
.. .....-+.++|||+.+.|++|++. .-...+.+.+|+.. -..++++. ...|..+.|+|.-+.|+.++.++.
T Consensus 401 ~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~ 480 (641)
T KOG0772|consen 401 NVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGT 480 (641)
T ss_pred hhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCc
Confidence 32 334667899999999999999875 22224678888854 34555553 367889999999998888887776
Q ss_pred H
Q 005140 623 I 623 (712)
Q Consensus 623 i 623 (712)
+
T Consensus 481 ~ 481 (641)
T KOG0772|consen 481 A 481 (641)
T ss_pred e
Confidence 5
No 97
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=3.7e-21 Score=200.79 Aligned_cols=238 Identities=16% Similarity=0.291 Sum_probs=170.1
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC--------------------------------------
Q 005140 254 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG-------------------------------------- 295 (712)
Q Consensus 254 ~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g-------------------------------------- 295 (712)
..|.++.||+||+|||+|+.| +.|+||.+...
T Consensus 268 gaIw~mKFS~DGKyLAsaGeD----------~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 268 GAIWAMKFSHDGKYLASAGED----------GVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred CcEEEEEeCCCCceeeecCCC----------ceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 349999999999999999999 99999987540
Q ss_pred ----------------------ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCcee
Q 005140 296 ----------------------KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTL 352 (712)
Q Consensus 296 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~ 352 (712)
++++.|.+|...+. .+.||. + ++|.+++ |.+|++|++.....
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DIL-------------DlSWSK-n-~fLLSSSMDKTVRLWh~~~~~C 402 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADIL-------------DLSWSK-N-NFLLSSSMDKTVRLWHPGRKEC 402 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhhe-------------eccccc-C-CeeEeccccccEEeecCCCcce
Confidence 01122334443331 688987 4 5666666 99999999998777
Q ss_pred cccccccccCeeeEEECCC-CCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccc
Q 005140 353 IDKKSLKVENVMDFSWSPT-DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRY 431 (712)
Q Consensus 353 ~~~~~~~~~~v~~~~~sp~-~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~ 431 (712)
+... .|..-|+|++|+|- ++++++ |+-|+.++||- ++..+ ++
T Consensus 403 L~~F-~HndfVTcVaFnPvDDryFiS-----GSLD~KvRiWs--I~d~~-----------------------Vv------ 445 (712)
T KOG0283|consen 403 LKVF-SHNDFVTCVAFNPVDDRYFIS-----GSLDGKVRLWS--ISDKK-----------------------VV------ 445 (712)
T ss_pred eeEE-ecCCeeEEEEecccCCCcEee-----cccccceEEee--cCcCe-----------------------eE------
Confidence 7554 68888999999994 688888 77777766653 22211 11
Q ss_pred ccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEE---
Q 005140 432 TKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLT--- 508 (712)
Q Consensus 432 ~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~--- 508 (712)
.| ..+ ..-|++++++|||++.++|+-+| .++||+....+..... .+.
T Consensus 446 ------------~W-----------~Dl---~~lITAvcy~PdGk~avIGt~~G---~C~fY~t~~lk~~~~~-~I~~~~ 495 (712)
T KOG0283|consen 446 ------------DW-----------NDL---RDLITAVCYSPDGKGAVIGTFNG---YCRFYDTEGLKLVSDF-HIRLHN 495 (712)
T ss_pred ------------ee-----------hhh---hhhheeEEeccCCceEEEEEecc---EEEEEEccCCeEEEee-eEeecc
Confidence 11 012 46789999999999999999999 9999998653321000 011
Q ss_pred --EeCCCceeEEEEccCCC-eEEEEeccCCCceEEEEECCcceeeeecc----ccceeeEEECCCCCEEEEEEccceecc
Q 005140 509 --TLKGKQANALFWSPSGR-FIVLAGLKGFNGQLEFYNVDELETMATAE----HFMATDVEWDPTGRYVATAVTSVHEME 581 (712)
Q Consensus 509 --~~~~~~v~~l~~spdg~-~l~~~~~~~~dg~v~iwd~~~~~~~~~~~----~~~v~~~~~spdg~~l~t~s~~~~~~d 581 (712)
...++.|+.+.|.|... .+++.+. |..|+|||..+..++.... ...-....|+.||++|++++. |
T Consensus 496 ~Kk~~~~rITG~Q~~p~~~~~vLVTSn---DSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~se-----D 567 (712)
T KOG0283|consen 496 KKKKQGKRITGLQFFPGDPDEVLVTSN---DSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASE-----D 567 (712)
T ss_pred CccccCceeeeeEecCCCCCeEEEecC---CCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeec-----C
Confidence 11233699999998543 3555555 9999999997666655422 134457899999999999998 9
Q ss_pred ccEEEEEecC
Q 005140 582 NGFNIWSFNG 591 (712)
Q Consensus 582 ~~v~iw~~~g 591 (712)
..|+||++..
T Consensus 568 s~VYiW~~~~ 577 (712)
T KOG0283|consen 568 SWVYIWKNDS 577 (712)
T ss_pred ceEEEEeCCC
Confidence 9999999854
No 98
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.88 E-value=1.7e-20 Score=180.52 Aligned_cols=285 Identities=14% Similarity=0.247 Sum_probs=222.6
Q ss_pred eeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEec
Q 005140 248 LMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWG 327 (712)
Q Consensus 248 ~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 327 (712)
+.....+++.++...|....+++|+.| ..+.++|..+++.+..|+||...++ .+.++
T Consensus 214 LH~t~~pgi~ald~~~s~~~ilTGG~d----------~~av~~d~~s~q~l~~~~Gh~kki~-------------~v~~~ 270 (506)
T KOG0289|consen 214 LHSTSTPGITALDIIPSSSKILTGGED----------KTAVLFDKPSNQILATLKGHTKKIT-------------SVKFH 270 (506)
T ss_pred eeccCCCCeeEEeecCCCCcceecCCC----------CceEEEecchhhhhhhccCcceEEE-------------EEEec
Confidence 333445678999999988889999999 8899999999999999999988764 68899
Q ss_pred CCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeee
Q 005140 328 GGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKN 406 (712)
Q Consensus 328 ~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 406 (712)
+ +...+++++ |..|+||.............|...|+.+..+|.|.||+. ++.++... ..++.+...+....
T Consensus 271 ~-~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYlls-----As~d~~w~--Fsd~~~g~~lt~vs 342 (506)
T KOG0289|consen 271 K-DLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLS-----ASNDGTWA--FSDISSGSQLTVVS 342 (506)
T ss_pred c-chhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEE-----ecCCceEE--EEEccCCcEEEEEe
Confidence 9 988888888 999999999876655555567888999999999999998 55555443 34445555444333
Q ss_pred e--eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcC
Q 005140 407 L--FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGD 484 (712)
Q Consensus 407 ~--~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d 484 (712)
. ..+...+..|+|||-.+.+++.++. +.+|++.... ..-.+++|.++|.+++|+-+|-+||++..|
T Consensus 343 ~~~s~v~~ts~~fHpDgLifgtgt~d~~---------vkiwdlks~~---~~a~Fpght~~vk~i~FsENGY~Lat~add 410 (506)
T KOG0289|consen 343 DETSDVEYTSAAFHPDGLIFGTGTPDGV---------VKIWDLKSQT---NVAKFPGHTGPVKAISFSENGYWLATAADD 410 (506)
T ss_pred eccccceeEEeeEcCCceEEeccCCCce---------EEEEEcCCcc---ccccCCCCCCceeEEEeccCceEEEEEecC
Confidence 2 2344556689999999999999877 8999998754 335688999999999999999999999999
Q ss_pred CCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECC--cceeeee--ccccceee
Q 005140 485 SPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD--ELETMAT--AEHFMATD 560 (712)
Q Consensus 485 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~--~~~~~~~--~~~~~v~~ 560 (712)
+ .|++||++.... ++.+..-....++++.|.+.|.+|++++. +=+|++++-. ....+.. .|.+..+.
T Consensus 411 ~---~V~lwDLRKl~n---~kt~~l~~~~~v~s~~fD~SGt~L~~~g~---~l~Vy~~~k~~k~W~~~~~~~~~sg~st~ 481 (506)
T KOG0289|consen 411 G---SVKLWDLRKLKN---FKTIQLDEKKEVNSLSFDQSGTYLGIAGS---DLQVYICKKKTKSWTEIKELADHSGLSTG 481 (506)
T ss_pred C---eEEEEEehhhcc---cceeeccccccceeEEEcCCCCeEEeecc---eeEEEEEecccccceeeehhhhcccccce
Confidence 9 899999975442 12222222346999999999999999976 6666666633 4445544 34467889
Q ss_pred EEECCCCCEEEEEEccceeccccEEEEEe
Q 005140 561 VEWDPTGRYVATAVTSVHEMENGFNIWSF 589 (712)
Q Consensus 561 ~~~spdg~~l~t~s~~~~~~d~~v~iw~~ 589 (712)
+.|...-+++++++. |..++++.+
T Consensus 482 v~Fg~~aq~l~s~sm-----d~~l~~~a~ 505 (506)
T KOG0289|consen 482 VRFGEHAQYLASTSM-----DAILRLYAL 505 (506)
T ss_pred eeecccceEEeeccc-----hhheEEeec
Confidence 999999999999999 888888764
No 99
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.6e-21 Score=180.01 Aligned_cols=272 Identities=14% Similarity=0.251 Sum_probs=194.9
Q ss_pred eeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEec
Q 005140 248 LMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWG 327 (712)
Q Consensus 248 ~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 327 (712)
..++.++...|+.||+.|.+||+|..+ |.|.|||+.|...-+.+.+|..++. +++||
T Consensus 18 ~~tld~~~a~~~~Fs~~G~~lAvGc~n----------G~vvI~D~~T~~iar~lsaH~~pi~-------------sl~WS 74 (405)
T KOG1273|consen 18 THTLDNPLAECCQFSRWGDYLAVGCAN----------GRVVIYDFDTFRIARMLSAHVRPIT-------------SLCWS 74 (405)
T ss_pred ceeccCCccceEEeccCcceeeeeccC----------CcEEEEEccccchhhhhhcccccee-------------EEEec
Confidence 344455568999999999999999999 9999999999998899999988764 89999
Q ss_pred CCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeee
Q 005140 328 GGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKN 406 (712)
Q Consensus 328 ~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 406 (712)
+ ||+.|.+++ |..|.+||+..|.++....+. ..|....|+|.....++.+. -+....+.
T Consensus 75 ~-dgr~LltsS~D~si~lwDl~~gs~l~rirf~-spv~~~q~hp~k~n~~va~~----~~~sp~vi-------------- 134 (405)
T KOG1273|consen 75 R-DGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD-SPVWGAQWHPRKRNKCVATI----MEESPVVI-------------- 134 (405)
T ss_pred C-CCCEeeeecCCceeEEEeccCCCceeEEEcc-CccceeeeccccCCeEEEEE----ecCCcEEE--------------
Confidence 9 999999999 999999999999877554333 35899999997544333211 11111111
Q ss_pred eeeecceeEEECcCCCEEEEE-EcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCC
Q 005140 407 LFSVSDCKMYWQSSGDYLAVK-VDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDS 485 (712)
Q Consensus 407 ~~~~~~~~~~~s~~g~~l~~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~ 485 (712)
.+++ +..-+.. .+++. + +....+..|.+.|+++++|...|
T Consensus 135 ---------~~s~-~~h~~Lp~d~d~d--------------------------l---n~sas~~~fdr~g~yIitGtsKG 175 (405)
T KOG1273|consen 135 ---------DFSD-PKHSVLPKDDDGD--------------------------L---NSSASHGVFDRRGKYIITGTSKG 175 (405)
T ss_pred ---------EecC-CceeeccCCCccc--------------------------c---ccccccccccCCCCEEEEecCcc
Confidence 1222 1111111 11100 0 11222236888999999999988
Q ss_pred CCCeEEEEEeecccccCceeEEEEeC--C-CceeEEEEccCCCeEEEEeccCCCceEEEEECCcc-------eee--ee-
Q 005140 486 PRPDISFYSMRTAQHAGRVSKLTTLK--G-KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL-------ETM--AT- 552 (712)
Q Consensus 486 ~~~~v~i~d~~~~~~~~~~~~~~~~~--~-~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~-------~~~--~~- 552 (712)
.+.+|+..+.. .+..+. . ..|.++.++..|++|++-+. |..|+.|++... ++- ..
T Consensus 176 ---kllv~~a~t~e------~vas~rits~~~IK~I~~s~~g~~liiNts---DRvIR~ye~~di~~~~r~~e~e~~~K~ 243 (405)
T KOG1273|consen 176 ---KLLVYDAETLE------CVASFRITSVQAIKQIIVSRKGRFLIINTS---DRVIRTYEISDIDDEGRDGEVEPEHKL 243 (405)
T ss_pred ---eEEEEecchhe------eeeeeeechheeeeEEEEeccCcEEEEecC---CceEEEEehhhhcccCccCCcChhHHH
Confidence 89999987653 333332 2 46888999999999999988 999999998731 111 11
Q ss_pred ---ccccceeeEEECCCCCEEEEEEccceeccccEEEEEec-Cceeeeecc---cceeeeEEecCCCCCCCh
Q 005140 553 ---AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRTLK---DHFFQFLWRPRPPSFLTP 617 (712)
Q Consensus 553 ---~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~~~---~~i~~~~w~p~~~~l~s~ 617 (712)
.....-.+++||.+|.|++.++.. -..++||.-+ |.++...|. ....++.|+|-...+++.
T Consensus 244 qDvVNk~~Wk~ccfs~dgeYv~a~s~~----aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si 311 (405)
T KOG1273|consen 244 QDVVNKLQWKKCCFSGDGEYVCAGSAR----AHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI 311 (405)
T ss_pred HHHHhhhhhhheeecCCccEEEecccc----ceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec
Confidence 122344579999999999988864 6799999977 777666654 457889999999888876
No 100
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=3.3e-20 Score=170.65 Aligned_cols=272 Identities=14% Similarity=0.172 Sum_probs=187.8
Q ss_pred CCCcccceEEEcC-CCcEEEEEecCc-eEEeecccCcceeee--ecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCcc
Q 005140 211 RSYWTESFVQWSP-LGTYLATVHRQG-AAVWGGANTFNRLMR--YAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRV 285 (712)
Q Consensus 211 ~~~~~v~~v~~Sp-dg~~lat~~~~~-i~iw~~~~~~~~~~~--~~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~ 285 (712)
....+|++++||| ...+|+.++-|+ |++|+++.++..+-+ ..|++ |.+++||.||..+++|+.| +
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~D----------k 94 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCD----------K 94 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccC----------C
Confidence 3457899999999 555666888888 999999844443333 23554 9999999999999999999 9
Q ss_pred EEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCC--EEEEec-CCeEEEEEcCCceecccccccccC
Q 005140 286 VINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK--YFAKLG-KNMISVYETESFTLIDKKSLKVEN 362 (712)
Q Consensus 286 ~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~--~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~ 362 (712)
.+++||+.+++ +..+..|...+. .+.|-+ ... .|++++ |++|+.||+.....+....+. +.
T Consensus 95 ~~k~wDL~S~Q-~~~v~~Hd~pvk-------------t~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP-eR 158 (347)
T KOG0647|consen 95 QAKLWDLASGQ-VSQVAAHDAPVK-------------TCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP-ER 158 (347)
T ss_pred ceEEEEccCCC-eeeeeeccccee-------------EEEEec-CCCcceeEecccccceeecccCCCCeeeeeecc-ce
Confidence 99999999995 566777777663 678877 555 789999 999999999866554332221 11
Q ss_pred eeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccE
Q 005140 363 VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGF 442 (712)
Q Consensus 363 v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~ 442 (712)
+.++..- ...+++ +.++..+
T Consensus 159 vYa~Dv~--~pm~vV-----ata~r~i----------------------------------------------------- 178 (347)
T KOG0647|consen 159 VYAADVL--YPMAVV-----ATAERHI----------------------------------------------------- 178 (347)
T ss_pred eeehhcc--CceeEE-----EecCCcE-----------------------------------------------------
Confidence 2222211 122222 2222222
Q ss_pred EEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeeccc--ccCceeEEEEe---CC--Cce
Q 005140 443 ELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQ--HAGRVSKLTTL---KG--KQA 515 (712)
Q Consensus 443 ~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~--~~~~~~~~~~~---~~--~~v 515 (712)
.+|.|.+.......++- .-+..+.+++..++.+.+|.|+-+| .+.|..++.+. .+..++..+.- .+ -.|
T Consensus 179 ~vynL~n~~te~k~~~S-pLk~Q~R~va~f~d~~~~alGsiEG---rv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaV 254 (347)
T KOG0647|consen 179 AVYNLENPPTEFKRIES-PLKWQTRCVACFQDKDGFALGSIEG---RVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAV 254 (347)
T ss_pred EEEEcCCCcchhhhhcC-cccceeeEEEEEecCCceEeeeecc---eEEEEecCCCCccCceeEEEeccCCCCCCceEEe
Confidence 23333221111000100 1156788999999999999999999 88888887642 22223333321 11 157
Q ss_pred eEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEc
Q 005140 516 NALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 516 ~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~ 575 (712)
++++|+|.-..|++++. ||++.+||-+....+.+ .+..+|++.+|+.+|.++|.+..
T Consensus 255 Nsi~FhP~hgtlvTaGs---DGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 255 NSIAFHPVHGTLVTAGS---DGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred cceEeecccceEEEecC---CceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEee
Confidence 89999999889999988 99999999987666655 56689999999999999998877
No 101
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.7e-20 Score=196.57 Aligned_cols=263 Identities=14% Similarity=0.295 Sum_probs=185.8
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC-ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCC
Q 005140 252 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG-KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK 330 (712)
Q Consensus 252 ~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d 330 (712)
|..+-+.|+|.|+|.+|++++.+ +.|++|+...- ....++..+...+ ..... +
T Consensus 12 ht~G~t~i~~d~~gefi~tcgsd----------g~ir~~~~~sd~e~P~ti~~~g~~v---------------~~ia~-~ 65 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTCGSD----------GDIRKWKTNSDEEEPETIDISGELV---------------SSIAC-Y 65 (933)
T ss_pred ccCceEEEEEcCCCCEEEEecCC----------CceEEeecCCcccCCchhhccCcee---------------EEEee-c
Confidence 44569999999999999999999 99999997544 3333333222222 23344 6
Q ss_pred CCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeee
Q 005140 331 DKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFS 409 (712)
Q Consensus 331 g~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 409 (712)
+.+|++++ +++|.+|..+++..-....--.-++.+++++.+|+++|. ||.|-.+++
T Consensus 66 s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaa-----gsdD~~vK~------------------ 122 (933)
T KOG1274|consen 66 SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAA-----GSDDTAVKL------------------ 122 (933)
T ss_pred ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEe-----ecCceeEEE------------------
Confidence 66888888 999999999877543222112224677777777777776 555544443
Q ss_pred ecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCe
Q 005140 410 VSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPD 489 (712)
Q Consensus 410 ~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~ 489 (712)
..+...+ ....+.+|.++|.++.++|.+++||+.+.|| .
T Consensus 123 -----------------------------------~~~~D~s---~~~~lrgh~apVl~l~~~p~~~fLAvss~dG---~ 161 (933)
T KOG1274|consen 123 -----------------------------------LNLDDSS---QEKVLRGHDAPVLQLSYDPKGNFLAVSSCDG---K 161 (933)
T ss_pred -----------------------------------Eeccccc---hheeecccCCceeeeeEcCCCCEEEEEecCc---e
Confidence 2221111 1144568999999999999999999999999 9
Q ss_pred EEEEEeecccccCceeEEE---EeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee----ccccceeeE
Q 005140 490 ISFYSMRTAQHAGRVSKLT---TLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT----AEHFMATDV 561 (712)
Q Consensus 490 v~i~d~~~~~~~~~~~~~~---~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~----~~~~~v~~~ 561 (712)
|+||++.++.....+..+. .+. ...++.++|+|+|..+++.+. ++.|.+|+..++..... .++..++++
T Consensus 162 v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~---d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~ 238 (933)
T KOG1274|consen 162 VQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV---DNTVKVYSRKGWELQFKLRDKLSSSKFSDL 238 (933)
T ss_pred EEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc---CCeEEEEccCCceeheeecccccccceEEE
Confidence 9999998754321111111 111 234678999999777777776 99999999998776554 334558999
Q ss_pred EECCCCCEEEEEEccceeccccEEEEEecCceeeeecccceeeeEEecCCCC
Q 005140 562 EWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLKDHFFQFLWRPRPPS 613 (712)
Q Consensus 562 ~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~~~~~i~~~~w~p~~~~ 613 (712)
+|||+|+|||+++. +|.|.|||..... .......|.+++|.|+.+.
T Consensus 239 ~wsPnG~YiAAs~~-----~g~I~vWnv~t~~-~~~~~~~Vc~~aw~p~~n~ 284 (933)
T KOG1274|consen 239 QWSPNGKYIAASTL-----DGQILVWNVDTHE-RHEFKRAVCCEAWKPNANA 284 (933)
T ss_pred EEcCCCcEEeeecc-----CCcEEEEecccch-hccccceeEEEecCCCCCe
Confidence 99999999999999 9999999998621 1233468999999998753
No 102
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.87 E-value=1.7e-20 Score=190.37 Aligned_cols=319 Identities=14% Similarity=0.218 Sum_probs=229.6
Q ss_pred hccCCCCCceEEEEECCeeEEEecCCCCCCCc--ccccCCCcccceEEEcC------------CCcEEEEEecCc-eEEe
Q 005140 175 WLTDEKARDQFVIRSGTDTEVLWNDARHLKPE--PVYKRSYWTESFVQWSP------------LGTYLATVHRQG-AAVW 239 (712)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~--~~~~~~~~~v~~v~~Sp------------dg~~lat~~~~~-i~iw 239 (712)
..+|+ .++.+.+.|+|..+.+|+.....+.- ..+-.|...|..+.--| -| .++|++.|+ |++|
T Consensus 330 ~~Fde-t~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~-cF~TCSsD~TIRlW 407 (1080)
T KOG1408|consen 330 CQFDE-TTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRG-CFTTCSSDGTIRLW 407 (1080)
T ss_pred EEecC-CCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCcc-ceeEecCCCcEEEe
Confidence 44444 56677889999999999984333222 22344554444333222 23 467788887 8899
Q ss_pred eccc--Ccceeee---------------------------e---------cCCCeeEEEecCCCCEEEEEcCCCCCCCcC
Q 005140 240 GGAN--TFNRLMR---------------------------Y---------AHPQVKLIDFSPGEKYLVTYSSHEPSNPRD 281 (712)
Q Consensus 240 ~~~~--~~~~~~~---------------------------~---------~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~ 281 (712)
++.. ......+ + ...++++++.||+|++||+|...
T Consensus 408 ~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~------- 480 (1080)
T KOG1408|consen 408 DLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRG------- 480 (1080)
T ss_pred ecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCcc-------
Confidence 9872 0111100 0 01248999999999999999998
Q ss_pred CCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCC--CCCEEEEec-CCeEEEEEcC-Cceeccccc
Q 005140 282 ANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGG--KDKYFAKLG-KNMISVYETE-SFTLIDKKS 357 (712)
Q Consensus 282 ~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--dg~~la~~~-d~~i~iwd~~-~~~~~~~~~ 357 (712)
|+|+||++..-+....+..|...+. ++.+|.. ..++||+++ |.-|.|||+. ...++....
T Consensus 481 ---GnlrVy~Lq~l~~~~~~eAHesEil-------------cLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld 544 (1080)
T KOG1408|consen 481 ---GNLRVYDLQELEYTCFMEAHESEIL-------------CLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLD 544 (1080)
T ss_pred ---CceEEEEehhhhhhhheecccceeE-------------EEeecCchhhhHhhhhccCCceEEEEecccccchhhhhc
Confidence 9999999998888888888988763 6777642 346899999 9999999987 344555666
Q ss_pred ccccCeeeEEECCCC--CeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccc
Q 005140 358 LKVENVMDFSWSPTD--PIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTK 435 (712)
Q Consensus 358 ~~~~~v~~~~~sp~~--~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~ 435 (712)
.|...|+++.|...| ..+++ +|.|..+......- +.+|..+.-..
T Consensus 545 ~HSssITsvKFa~~gln~~Mis-----cGADksimFr~~qk---------------------~~~g~~f~r~t------- 591 (1080)
T KOG1408|consen 545 GHSSSITSVKFACNGLNRKMIS-----CGADKSIMFRVNQK---------------------ASSGRLFPRHT------- 591 (1080)
T ss_pred ccccceeEEEEeecCCceEEEe-----ccCchhhheehhcc---------------------ccCceeccccc-------
Confidence 778889999998776 55555 55665544221110 11121111000
Q ss_pred ccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--
Q 005140 436 KSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK-- 513 (712)
Q Consensus 436 ~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-- 513 (712)
.++ ....+.+++..|..++++++..|. +|+||++.+++ ..+.+++.
T Consensus 592 ---------------------~t~--~ktTlYDm~Vdp~~k~v~t~cQDr---nirif~i~sgK------q~k~FKgs~~ 639 (1080)
T KOG1408|consen 592 ---------------------QTL--SKTTLYDMAVDPTSKLVVTVCQDR---NIRIFDIESGK------QVKSFKGSRD 639 (1080)
T ss_pred ---------------------ccc--ccceEEEeeeCCCcceEEEEeccc---ceEEEeccccc------eeeeeccccc
Confidence 001 145677889999999999999999 99999998776 45555432
Q ss_pred ---ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 514 ---QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 514 ---~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
..-.+...|.|-||++.+. |.+|.|+|+.+++++.+ +|...|+.+.|++|.+.|++.+. |+.|+||.
T Consensus 640 ~eG~lIKv~lDPSgiY~atScs---dktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsg-----DgCIFvW~ 711 (1080)
T KOG1408|consen 640 HEGDLIKVILDPSGIYLATSCS---DKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSG-----DGCIFVWK 711 (1080)
T ss_pred CCCceEEEEECCCccEEEEeec---CCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecC-----CceEEEEE
Confidence 3566889999999999998 99999999999999986 78899999999999999999999 99999999
Q ss_pred ecC
Q 005140 589 FNG 591 (712)
Q Consensus 589 ~~g 591 (712)
+.-
T Consensus 712 lp~ 714 (1080)
T KOG1408|consen 712 LPL 714 (1080)
T ss_pred Cch
Confidence 864
No 103
>PTZ00421 coronin; Provisional
Probab=99.87 E-value=7.4e-20 Score=193.95 Aligned_cols=266 Identities=8% Similarity=0.157 Sum_probs=180.7
Q ss_pred cccceEEEcCCCcEEEEEecCce-EEeecccCc---------c-----eeeeecCCCeeEEEecC-CCCEEEEEcCCCCC
Q 005140 214 WTESFVQWSPLGTYLATVHRQGA-AVWGGANTF---------N-----RLMRYAHPQVKLIDFSP-GEKYLVTYSSHEPS 277 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~~~i-~iw~~~~~~---------~-----~~~~~~~~~v~~i~~Sp-dg~~l~t~s~d~~~ 277 (712)
..|+....++|+..+++++.+.+ ..|+..+.. + .+...|...|.+++|+| ++++|++++.|
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~D--- 97 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASED--- 97 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCC---
Confidence 34455566666665666555553 356544211 1 11222333499999999 88999999999
Q ss_pred CCcCCCccEEEEEEccCCc-------eeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC-CEEEEec-CCeEEEEEcC
Q 005140 278 NPRDANRVVINIFDVRTGK-------VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD-KYFAKLG-KNMISVYETE 348 (712)
Q Consensus 278 ~~~~~~~~~I~iwd~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg-~~la~~~-d~~i~iwd~~ 348 (712)
++|+|||+.++. .+..+.+|...+. +++|+| ++ .+|++++ |++|+|||+.
T Consensus 98 -------gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~-------------~l~f~P-~~~~iLaSgs~DgtVrIWDl~ 156 (493)
T PTZ00421 98 -------GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVG-------------IVSFHP-SAMNVLASAGADMVVNVWDVE 156 (493)
T ss_pred -------CEEEEEecCCCccccccCcceEEecCCCCcEE-------------EEEeCc-CCCCEEEEEeCCCEEEEEECC
Confidence 999999997652 4667778876653 799999 86 6888888 9999999999
Q ss_pred CceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeec-ceeEEECcCCCEEEEE
Q 005140 349 SFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVS-DCKMYWQSSGDYLAVK 427 (712)
Q Consensus 349 ~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~g~~l~~~ 427 (712)
++..+.....|...|.+++|+|+|..|++ ++.|+.++| |+..+.+.+.....+... ...+.|.+++..+++.
T Consensus 157 tg~~~~~l~~h~~~V~sla~spdG~lLat-----gs~Dg~IrI--wD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~ 229 (493)
T PTZ00421 157 RGKAVEVIKCHSDQITSLEWNLDGSLLCT-----TSKDKKLNI--IDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITL 229 (493)
T ss_pred CCeEEEEEcCCCCceEEEEEECCCCEEEE-----ecCCCEEEE--EECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEE
Confidence 88877666667788999999999999998 777776665 555555544443333222 2356799988887765
Q ss_pred EcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEE-cCCCCCeEEEEEeecccccCceeE
Q 005140 428 VDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIH-GDSPRPDISFYSMRTAQHAGRVSK 506 (712)
Q Consensus 428 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~-~d~~~~~v~i~d~~~~~~~~~~~~ 506 (712)
..... ....+.+|+++....+.....+ .+...+....|+|++++|++++ +|+ .|++|++.++.. ..
T Consensus 230 G~s~s-----~Dr~VklWDlr~~~~p~~~~~~-d~~~~~~~~~~d~d~~~L~lggkgDg---~Iriwdl~~~~~----~~ 296 (493)
T PTZ00421 230 GCSKS-----QQRQIMLWDTRKMASPYSTVDL-DQSSALFIPFFDEDTNLLYIGSKGEG---NIRCFELMNERL----TF 296 (493)
T ss_pred ecCCC-----CCCeEEEEeCCCCCCceeEecc-CCCCceEEEEEcCCCCEEEEEEeCCC---eEEEEEeeCCce----EE
Confidence 43211 1233899999876555443333 2334566678999999999887 588 999999976542 11
Q ss_pred EEEeC-CCceeEEEEccC
Q 005140 507 LTTLK-GKQANALFWSPS 523 (712)
Q Consensus 507 ~~~~~-~~~v~~l~~spd 523 (712)
...+. ..+...++|.|.
T Consensus 297 ~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 297 CSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred EeeccCCCCCcceEeccc
Confidence 11222 235677888885
No 104
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.87 E-value=3.7e-19 Score=181.73 Aligned_cols=288 Identities=13% Similarity=0.201 Sum_probs=194.2
Q ss_pred eEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEE-EEEecCc-eEEeecccCcceeeeec-CCCeeEEE
Q 005140 184 QFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYL-ATVHRQG-AAVWGGANTFNRLMRYA-HPQVKLID 260 (712)
Q Consensus 184 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~l-at~~~~~-i~iw~~~~~~~~~~~~~-~~~v~~i~ 260 (712)
.|+....++.+.+|+. ..++....+..+. .+.+++|+|+|+++ ++++.++ +.+|+.. +++.+..+. +..+..++
T Consensus 3 ~~~s~~~d~~v~~~d~-~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~~ 79 (300)
T TIGR03866 3 AYVSNEKDNTISVIDT-ATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLA-TGEVIGTLPSGPDPELFA 79 (300)
T ss_pred EEEEecCCCEEEEEEC-CCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECC-CCcEEEeccCCCCccEEE
Confidence 4666777888999998 4555666666554 36789999999977 4555566 8899998 666666554 34478899
Q ss_pred ecCCCCEEEEEc-CCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-
Q 005140 261 FSPGEKYLVTYS-SHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG- 338 (712)
Q Consensus 261 ~Spdg~~l~t~s-~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~- 338 (712)
|+|+|++|++++ .+ +.|++||+.+++.+..+..+.... .++|+| +|++++++.
T Consensus 80 ~~~~g~~l~~~~~~~----------~~l~~~d~~~~~~~~~~~~~~~~~--------------~~~~~~-dg~~l~~~~~ 134 (300)
T TIGR03866 80 LHPNGKILYIANEDD----------NLVTVIDIETRKVLAEIPVGVEPE--------------GMAVSP-DGKIVVNTSE 134 (300)
T ss_pred ECCCCCEEEEEcCCC----------CeEEEEECCCCeEEeEeeCCCCcc--------------eEEECC-CCCEEEEEec
Confidence 999999886654 45 789999999888877775433222 589999 999998887
Q ss_pred C-CeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEE
Q 005140 339 K-NMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYW 417 (712)
Q Consensus 339 d-~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (712)
+ ..+.+|+..++..+.... .......++|+|+++.|++ + ......|.+|+..+.+.+.... +
T Consensus 135 ~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~-----~-~~~~~~v~i~d~~~~~~~~~~~----------~ 197 (300)
T TIGR03866 135 TTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWV-----S-SEIGGTVSVIDVATRKVIKKIT----------F 197 (300)
T ss_pred CCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEE-----E-cCCCCEEEEEEcCcceeeeeee----------e
Confidence 4 457778988776543321 2234577899999998865 2 2223345566654433221111 0
Q ss_pred CcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEc-CCCCCeEEEEEee
Q 005140 418 QSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDISFYSMR 496 (712)
Q Consensus 418 s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~-d~~~~~v~i~d~~ 496 (712)
... +.. ........++|+|++++++++.. ++ .+.+||+.
T Consensus 198 ~~~------------------------------~~~-------~~~~~~~~i~~s~dg~~~~~~~~~~~---~i~v~d~~ 237 (300)
T TIGR03866 198 EIP------------------------------GVH-------PEAVQPVGIKLTKDGKTAFVALGPAN---RVAVVDAK 237 (300)
T ss_pred ccc------------------------------ccc-------cccCCccceEECCCCCEEEEEcCCCC---eEEEEECC
Confidence 000 000 00112345789999998766544 34 79999986
Q ss_pred cccccCceeEEEEe-CCCceeEEEEccCCCeEEEEe-ccCCCceEEEEECCcceeeeec-cccceeeEEECC
Q 005140 497 TAQHAGRVSKLTTL-KGKQANALFWSPSGRFIVLAG-LKGFNGQLEFYNVDELETMATA-EHFMATDVEWDP 565 (712)
Q Consensus 497 ~~~~~~~~~~~~~~-~~~~v~~l~~spdg~~l~~~~-~~~~dg~v~iwd~~~~~~~~~~-~~~~v~~~~~sp 565 (712)
++. .+..+ .++.+.+++|+|+|++|++++ . +|.|.+||+.+++.+... .....+.++++|
T Consensus 238 ~~~------~~~~~~~~~~~~~~~~~~~g~~l~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 238 TYE------VLDYLLVGQRVWQLAFTPDEKYLLTTNGV---SNDVSVIDVAALKVIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred CCc------EEEEEEeCCCcceEEECCCCCEEEEEcCC---CCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence 543 22222 345788999999999998864 3 799999999998876653 235567777765
No 105
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.87 E-value=5.3e-21 Score=177.53 Aligned_cols=343 Identities=15% Similarity=0.225 Sum_probs=230.0
Q ss_pred eEEEcCCCcEEEEEecCceEEeecccCcceeeeec-CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc
Q 005140 218 FVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYA-HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK 296 (712)
Q Consensus 218 ~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~-~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~ 296 (712)
.++|||+|+|||+.+...+.|-|.. +.+...-|. ...|..+.|+.|..+++.+.... +.|.+|++..-+
T Consensus 13 ~c~fSp~g~yiAs~~~yrlviRd~~-tlq~~qlf~cldki~yieW~ads~~ilC~~yk~---------~~vqvwsl~Qpe 82 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLVIRDSE-TLQLHQLFLCLDKIVYIEWKADSCHILCVAYKD---------PKVQVWSLVQPE 82 (447)
T ss_pred ceeECCCCCeeeeeeeeEEEEeccc-hhhHHHHHHHHHHhhheeeeccceeeeeeeecc---------ceEEEEEeecce
Confidence 5799999999999999999899988 776655553 44588999999998877665431 689999997666
Q ss_pred eeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCeeeEEECCCCCe
Q 005140 297 VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPI 374 (712)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 374 (712)
--..+....... + ..+||| ||+.|...+ +-.|.||.+.+.+..... ....++..++|+|||++
T Consensus 83 w~ckIdeg~agl-----------s--~~~WSP-dgrhiL~tseF~lriTVWSL~t~~~~~~~-~pK~~~kg~~f~~dg~f 147 (447)
T KOG4497|consen 83 WYCKIDEGQAGL-----------S--SISWSP-DGRHILLTSEFDLRITVWSLNTQKGYLLP-HPKTNVKGYAFHPDGQF 147 (447)
T ss_pred eEEEeccCCCcc-----------e--eeeECC-CcceEeeeecceeEEEEEEeccceeEEec-ccccCceeEEECCCCce
Confidence 555554443332 2 689999 997666655 899999999865533211 22335789999999999
Q ss_pred EEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcce
Q 005140 375 ISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPI 454 (712)
Q Consensus 375 la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 454 (712)
.+..... |..-.+.+........++.......+...+.|+|||..|++-..--. ..+|.
T Consensus 148 ~ai~sRr----DCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le---------ykv~a-------- 206 (447)
T KOG4497|consen 148 CAILSRR----DCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE---------YKVYA-------- 206 (447)
T ss_pred eeeeecc----cHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh---------heeee--------
Confidence 9884322 21111111111122223333334455566799999999987543211 11111
Q ss_pred eEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecc---------------c--------------------
Q 005140 455 EVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTA---------------Q-------------------- 499 (712)
Q Consensus 455 ~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~---------------~-------------------- 499 (712)
.+- .-.+..++|+|.+++|++|+.|+ .+++.+--+- .
T Consensus 207 --Ye~---~lG~k~v~wsP~~qflavGsyD~---~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLs 278 (447)
T KOG4497|consen 207 --YER---GLGLKFVEWSPCNQFLAVGSYDQ---MLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLS 278 (447)
T ss_pred --eee---ccceeEEEeccccceEEeeccch---hhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccc
Confidence 111 34677899999999999999996 4444321110 0
Q ss_pred --------ccC-----c------eeEEEEeC------C--CceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee
Q 005140 500 --------HAG-----R------VSKLTTLK------G--KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT 552 (712)
Q Consensus 500 --------~~~-----~------~~~~~~~~------~--~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~ 552 (712)
... . ...+..+. + ..+.-++||+|..|+++-.. +..+.+.+||++..++...
T Consensus 279 f~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd-~~PnalW~Wdlq~l~l~av 357 (447)
T KOG4497|consen 279 FTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRND-KYPNALWLWDLQNLKLHAV 357 (447)
T ss_pred cCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecC-CCCceEEEEechhhhhhhh
Confidence 000 0 00011111 1 12456999999999998763 3478899999998777654
Q ss_pred -ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCceeeeecc--cceeeeEEecCCCCCCChhhH
Q 005140 553 -AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLK--DHFFQFLWRPRPPSFLTPEKE 620 (712)
Q Consensus 553 -~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~~~--~~i~~~~w~p~~~~l~s~~~d 620 (712)
....+|..+.|+|....|+.+.. ...+++|...|......+. -.|..+.|.-.|..++-.+.|
T Consensus 358 LiQk~piraf~WdP~~prL~vctg-----~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kD 423 (447)
T KOG4497|consen 358 LIQKHPIRAFEWDPGRPRLVVCTG-----KSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKD 423 (447)
T ss_pred hhhccceeEEEeCCCCceEEEEcC-----CceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCC
Confidence 44578999999999888888887 6789999999866555443 468899999999887766655
No 106
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.87 E-value=1.9e-21 Score=178.97 Aligned_cols=275 Identities=15% Similarity=0.236 Sum_probs=208.6
Q ss_pred eEEecCCCCCEEEEec-CCeEEEEEcCCc------------e------ecccccccccCeeeEEECCCCCeEEEEeecCC
Q 005140 323 VFRWGGGKDKYFAKLG-KNMISVYETESF------------T------LIDKKSLKVENVMDFSWSPTDPIISLFVPELG 383 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~-d~~i~iwd~~~~------------~------~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~ 383 (712)
+-+||+ ||.++|+++ |..|+|.|++.+ . ++..+--|.+.|+++.|+|...+|++ +
T Consensus 117 ~aafs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS-----~ 190 (430)
T KOG0640|consen 117 AAAFSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILIS-----G 190 (430)
T ss_pred eeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEe-----c
Confidence 679999 999999999 999999998721 1 12222236677999999999999999 8
Q ss_pred CCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCC
Q 005140 384 GGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKN 463 (712)
Q Consensus 384 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~ 463 (712)
+.|+.++++.+.-++-+.-...-.......++.|+|.|.+|+++++..+ +++|++.....-+....-.+|.
T Consensus 191 srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~---------~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 191 SRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPT---------LRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred cCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCc---------eeEEeccceeEeeecCcccccc
Confidence 8999998888776653311100001123345689999999999999877 7899987655443333445789
Q ss_pred CceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEe---C-CCceeEEEEccCCCeEEEEeccCCCceE
Q 005140 464 DKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL---K-GKQANALFWSPSGRFIVLAGLKGFNGQL 539 (712)
Q Consensus 464 ~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~---~-~~~v~~l~~spdg~~l~~~~~~~~dg~v 539 (712)
+.|+++.+|+.|+..++++.|| .|+|||=-+.. .+.++ + +..|.+..|+.+|+|+++.+. |..+
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG---~IklwDGVS~r------Cv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~---DS~v 329 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDG---AIKLWDGVSNR------CVRTIGNAHGGSEVCSAVFTKNGKYILSSGK---DSTV 329 (430)
T ss_pred cceeEEEecCCccEEEEeccCC---cEEeeccccHH------HHHHHHhhcCCceeeeEEEccCCeEEeecCC---ccee
Confidence 9999999999999999999999 99999953322 33333 2 336899999999999999998 9999
Q ss_pred EEEECCcceeeeeccc-------cceeeEEECCCCCEEEEEEccceeccccEEEEEec-Cc---eeeeecccceeeeEEe
Q 005140 540 EFYNVDELETMATAEH-------FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GK---LLYRTLKDHFFQFLWR 608 (712)
Q Consensus 540 ~iwd~~~~~~~~~~~~-------~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~---~~~~~~~~~i~~~~w~ 608 (712)
++|.+.+++.+..... ..-+...|+....|++.-... .+.+.-||.. +. ++..-|.+.+..+.-|
T Consensus 330 kLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEa----s~slcsWdaRtadr~~l~slgHn~a~R~i~HS 405 (430)
T KOG0640|consen 330 KLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEA----SNSLCSWDARTADRVALLSLGHNGAVRWIVHS 405 (430)
T ss_pred eeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccc----cCceeeccccchhhhhhcccCCCCCceEEEeC
Confidence 9999999988875322 223456788888888877664 6788889865 32 3334477889999999
Q ss_pred cCCCCCCChhhHHHHHHHHH
Q 005140 609 PRPPSFLTPEKEEEIAKNLK 628 (712)
Q Consensus 609 p~~~~l~s~~~d~~i~~~~~ 628 (712)
|.++-+++++.|-.+|-|++
T Consensus 406 P~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 406 PVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred CCCCceeeecccceeeeeee
Confidence 99999999999988886654
No 107
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.86 E-value=1.8e-20 Score=183.03 Aligned_cols=277 Identities=13% Similarity=0.140 Sum_probs=209.8
Q ss_pred CCCcccceEEEcCCCcEEEEEecCceEEeecccCc--ceeeeec---CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCc
Q 005140 211 RSYWTESFVQWSPLGTYLATVHRQGAAVWGGANTF--NRLMRYA---HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANR 284 (712)
Q Consensus 211 ~~~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~--~~~~~~~---~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~ 284 (712)
.|..-|..+..|...+++.||+..+|+|||+...+ ..+..+. .. -|+++.++|||+.|++|+.-
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGea---------- 486 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEA---------- 486 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccc----------
Confidence 46677889999999999999999999999987332 2333332 12 39999999999999999998
Q ss_pred cEEEEEEccCCcee--eeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccccccccc
Q 005140 285 VVINIFDVRTGKVM--RDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVE 361 (712)
Q Consensus 285 ~~I~iwd~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~ 361 (712)
.++.|||+..-..- ..+...... +.+++.|| |.+.+.++. ||.|.|||+.+..++..+..|.+
T Consensus 487 stlsiWDLAapTprikaeltssapa-------------CyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtD 552 (705)
T KOG0639|consen 487 STLSIWDLAAPTPRIKAELTSSAPA-------------CYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 552 (705)
T ss_pred ceeeeeeccCCCcchhhhcCCcchh-------------hhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCC
Confidence 89999998654421 122221111 22588999 998665554 99999999999999999999999
Q ss_pred CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccccccc
Q 005140 362 NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTG 441 (712)
Q Consensus 362 ~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~ 441 (712)
++.||..+++|..|.+ |+-|+.++.| ++...+.+.++. |...+.++...|++.+|+++.....
T Consensus 553 GascIdis~dGtklWT-----GGlDntvRcW--Dlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~--------- 615 (705)
T KOG0639|consen 553 GASCIDISKDGTKLWT-----GGLDNTVRCW--DLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSN--------- 615 (705)
T ss_pred CceeEEecCCCceeec-----CCCccceeeh--hhhhhhhhhhhh-hhhhheecccCCCccceeeecccCc---------
Confidence 9999999999999999 7788877755 555555444444 5566777788999999999988754
Q ss_pred EEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEc
Q 005140 442 FELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWS 521 (712)
Q Consensus 442 ~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~s 521 (712)
+|.+...+.. ...+.-|..-|.++.|++.|++|++.+.|. -+..|...-+.. .+..-...+|.++.+|
T Consensus 616 --vevlh~skp~--kyqlhlheScVLSlKFa~cGkwfvStGkDn---lLnawrtPyGas-----iFqskE~SsVlsCDIS 683 (705)
T KOG0639|consen 616 --VEVLHTSKPE--KYQLHLHESCVLSLKFAYCGKWFVSTGKDN---LLNAWRTPYGAS-----IFQSKESSSVLSCDIS 683 (705)
T ss_pred --EEEEecCCcc--ceeecccccEEEEEEecccCceeeecCchh---hhhhccCccccc-----eeeccccCcceeeeec
Confidence 4444433322 244556899999999999999999999998 788898765542 2333335589999999
Q ss_pred cCCCeEEEEeccCCCceEEEEE
Q 005140 522 PSGRFIVLAGLKGFNGQLEFYN 543 (712)
Q Consensus 522 pdg~~l~~~~~~~~dg~v~iwd 543 (712)
.|.++|++|+. |..-.+|.
T Consensus 684 ~ddkyIVTGSG---dkkATVYe 702 (705)
T KOG0639|consen 684 FDDKYIVTGSG---DKKATVYE 702 (705)
T ss_pred cCceEEEecCC---CcceEEEE
Confidence 99999999986 66666664
No 108
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.1e-19 Score=168.03 Aligned_cols=281 Identities=16% Similarity=0.231 Sum_probs=183.6
Q ss_pred cceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee--cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEc
Q 005140 216 ESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY--AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDV 292 (712)
Q Consensus 216 v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~--~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~ 292 (712)
..|+.||+.|.+||.|+.+| +.|||.. ++..-..+ |...|++++||+||+.|+|++.| ..|.+||+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~-T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D----------~si~lwDl 94 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFD-TFRIARMLSAHVRPITSLCWSRDGRKLLTSSRD----------WSIKLWDL 94 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcc-ccchhhhhhccccceeEEEecCCCCEeeeecCC----------ceeEEEec
Confidence 67999999999999999999 8899999 77644443 44569999999999999999999 89999999
Q ss_pred cCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCC-CCEEEEecCCeEEEEEcCCc--eecccccccccCeeeEEEC
Q 005140 293 RTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK-DKYFAKLGKNMISVYETESF--TLIDKKSLKVENVMDFSWS 369 (712)
Q Consensus 293 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d-g~~la~~~d~~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s 369 (712)
..|.+++.+...... | ..+|.|.+ .+.+|+.-+..-.+.++... .++. -+
T Consensus 95 ~~gs~l~rirf~spv-------------~-~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp-------------~d 147 (405)
T KOG1273|consen 95 LKGSPLKRIRFDSPV-------------W-GAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLP-------------KD 147 (405)
T ss_pred cCCCceeEEEccCcc-------------c-eeeeccccCCeEEEEEecCCcEEEEecCCceeecc-------------CC
Confidence 999999888766443 4 47888842 23444443443444333321 1111 11
Q ss_pred CCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEec
Q 005140 370 PTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKE 449 (712)
Q Consensus 370 p~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 449 (712)
+++..=.+ + . ...|.+.|+++++++..+. +.+|+...
T Consensus 148 ~d~dln~s-----a--------------------s---------~~~fdr~g~yIitGtsKGk---------llv~~a~t 184 (405)
T KOG1273|consen 148 DDGDLNSS-----A--------------------S---------HGVFDRRGKYIITGTSKGK---------LLVYDAET 184 (405)
T ss_pred Cccccccc-----c--------------------c---------cccccCCCCEEEEecCcce---------EEEEecch
Confidence 11100000 0 0 0023455555555554433 33333332
Q ss_pred CCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeeccccc---CceeEEEEeC----CCceeEEEEcc
Q 005140 450 RDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHA---GRVSKLTTLK----GKQANALFWSP 522 (712)
Q Consensus 450 ~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~---~~~~~~~~~~----~~~v~~l~~sp 522 (712)
...- ....+. ....|..+.++-.|..|++-+.|. .|+.|+++.-... ....+.+.+. ..+-++++||.
T Consensus 185 ~e~v-as~rit-s~~~IK~I~~s~~g~~liiNtsDR---vIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~ 259 (405)
T KOG1273|consen 185 LECV-ASFRIT-SVQAIKQIIVSRKGRFLIINTSDR---VIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG 259 (405)
T ss_pred heee-eeeeec-hheeeeEEEEeccCcEEEEecCCc---eEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC
Confidence 1110 111110 035677888999999999999998 9999998632111 1111222221 11346789999
Q ss_pred CCCeEEEEeccCCCceEEEEECCcceeeeeccc---cceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 523 SGRFIVLAGLKGFNGQLEFYNVDELETMATAEH---FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 523 dg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~---~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
+|.|++.++. ....++||....|.+++..|. ....++.|.|--..|++-.. |.++||...
T Consensus 260 dgeYv~a~s~--~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~s------g~v~iw~~~ 322 (405)
T KOG1273|consen 260 DGEYVCAGSA--RAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIAS------GVVYIWAVV 322 (405)
T ss_pred CccEEEeccc--cceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccC------CceEEEEee
Confidence 9999998874 367899999999988877554 34678999999888888754 899999854
No 109
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.1e-18 Score=153.68 Aligned_cols=283 Identities=14% Similarity=0.236 Sum_probs=195.1
Q ss_pred CcccceEEEcCCCcEEEEEecCc-eEEeeccc-----Ccc--------ee--eeecCCC-eeEEEecCCCCEEEEEcCCC
Q 005140 213 YWTESFVQWSPLGTYLATVHRQG-AAVWGGAN-----TFN--------RL--MRYAHPQ-VKLIDFSPGEKYLVTYSSHE 275 (712)
Q Consensus 213 ~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~-----~~~--------~~--~~~~~~~-v~~i~~Spdg~~l~t~s~d~ 275 (712)
...|.+++|+|.|.+.|.|+... .+|..... ... .+ ..-+|.+ |.|.+|||+|..|++|+.|
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd- 110 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND- 110 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC-
Confidence 45788999999999999999887 44542210 110 11 1124555 9999999999999999999
Q ss_pred CCCCcCCCccEEEEEEccCCce-----eeeccCCCcccccCCCCCcCCCCcCeEEecCC---CCCEEEEec--CCeEEEE
Q 005140 276 PSNPRDANRVVINIFDVRTGKV-----MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGG---KDKYFAKLG--KNMISVY 345 (712)
Q Consensus 276 ~~~~~~~~~~~I~iwd~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---dg~~la~~~--d~~i~iw 345 (712)
.+|++.-.....+ -..|..|.+.+. .++|-.. .+.+|++++ |..|.+-
T Consensus 111 ---------k~ik~l~fn~dt~~~~g~dle~nmhdgtir-------------dl~fld~~~s~~~il~s~gagdc~iy~t 168 (350)
T KOG0641|consen 111 ---------KTIKVLPFNADTCNATGHDLEFNMHDGTIR-------------DLAFLDDPESGGAILASAGAGDCKIYIT 168 (350)
T ss_pred ---------ceEEEEecccccccccCcceeeeecCCcee-------------eeEEecCCCcCceEEEecCCCcceEEEe
Confidence 8888875432211 123444444432 4666431 456888888 6666666
Q ss_pred EcCCceecccccccccCeeeE-EECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEE
Q 005140 346 ETESFTLIDKKSLKVENVMDF-SWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYL 424 (712)
Q Consensus 346 d~~~~~~~~~~~~~~~~v~~~-~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l 424 (712)
|..+|+.+...+.|.+.|..+ .|+ |-.+++ |+.|.+++.|.+.++.--.
T Consensus 169 dc~~g~~~~a~sghtghilalyswn--~~m~~s-----gsqdktirfwdlrv~~~v~----------------------- 218 (350)
T KOG0641|consen 169 DCGRGQGFHALSGHTGHILALYSWN--GAMFAS-----GSQDKTIRFWDLRVNSCVN----------------------- 218 (350)
T ss_pred ecCCCCcceeecCCcccEEEEEEec--CcEEEc-----cCCCceEEEEeeeccceee-----------------------
Confidence 777777776666777665543 443 556666 6677777766655432100
Q ss_pred EEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCce
Q 005140 425 AVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRV 504 (712)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~ 504 (712)
+-+.. ....+ + ....|.+++..|.|+.|+++..|. ...+||++.+.
T Consensus 219 ---~l~~~--------------~~~~g-------l--essavaav~vdpsgrll~sg~~ds---sc~lydirg~r----- 264 (350)
T KOG0641|consen 219 ---TLDND--------------FHDGG-------L--ESSAVAAVAVDPSGRLLASGHADS---SCMLYDIRGGR----- 264 (350)
T ss_pred ---eccCc--------------ccCCC-------c--ccceeEEEEECCCcceeeeccCCC---ceEEEEeeCCc-----
Confidence 00000 00000 0 146788999999999999999998 89999998765
Q ss_pred eEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcc-----eeee-eccccceeeEEECCCCCEEEEEEcc
Q 005140 505 SKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL-----ETMA-TAEHFMATDVEWDPTGRYVATAVTS 576 (712)
Q Consensus 505 ~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~-----~~~~-~~~~~~v~~~~~spdg~~l~t~s~~ 576 (712)
.+..+..| .|.++.|||...|++++++ |..|++-|++.- ..+. ..|...+..+.|.|..--+++.+.
T Consensus 265 -~iq~f~phsadir~vrfsp~a~yllt~sy---d~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssa- 339 (350)
T KOG0641|consen 265 -MIQRFHPHSADIRCVRFSPGAHYLLTCSY---DMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSA- 339 (350)
T ss_pred -eeeeeCCCccceeEEEeCCCceEEEEecc---cceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccC-
Confidence 67777655 5899999999999999999 999999999831 1122 245577788999999888888888
Q ss_pred ceeccccEEEEEecC
Q 005140 577 VHEMENGFNIWSFNG 591 (712)
Q Consensus 577 ~~~~d~~v~iw~~~g 591 (712)
|.+..+|.++|
T Consensus 340 ----dkt~tlwa~~~ 350 (350)
T KOG0641|consen 340 ----DKTATLWALNG 350 (350)
T ss_pred ----cceEEEeccCC
Confidence 99999998764
No 110
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.86 E-value=2.8e-21 Score=184.76 Aligned_cols=271 Identities=17% Similarity=0.260 Sum_probs=204.1
Q ss_pred eeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc--eeeeccCCCcccccCCCCCcCCCCcCeEE
Q 005140 248 LMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK--VMRDFKGSADEFAVGGTGGVAGVSWPVFR 325 (712)
Q Consensus 248 ~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (712)
...+|...+..+.|-++...|++++.| ..|.+|++..++ .+.++.+..+.+. .+.
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~D----------r~Ik~W~v~~~k~~~~~tLaGs~g~it-------------~~d 226 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSD----------RIIKLWNVLGEKSELISTLAGSLGNIT-------------SID 226 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchh----------hhhhhhhcccchhhhhhhhhccCCCcc-------------eee
Confidence 334455569999999998999999999 899999986655 4566666655543 688
Q ss_pred ecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceee
Q 005140 326 WGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ 404 (712)
Q Consensus 326 ~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (712)
|.+ ++++++..+ |+.+++|++....+...+++|.+.|+++.|.-....++. ++.|.++++|.+. .....+
T Consensus 227 ~d~-~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVs-----gs~DRtiK~WDl~--k~~C~k- 297 (459)
T KOG0288|consen 227 FDS-DNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVS-----GSADRTIKLWDLQ--KAYCSK- 297 (459)
T ss_pred ecC-CCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceee-----ccccchhhhhhhh--hhheec-
Confidence 988 888777777 999999999999999999999999999999877666666 6677666655432 111000
Q ss_pred eeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcC
Q 005140 405 KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGD 484 (712)
Q Consensus 405 ~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d 484 (712)
. + + ....+.+++.+ ...+++++.|
T Consensus 298 -t-----------------~----------------------------------l--~~S~cnDI~~~--~~~~~SgH~D 321 (459)
T KOG0288|consen 298 -T-----------------V----------------------------------L--PGSQCNDIVCS--ISDVISGHFD 321 (459)
T ss_pred -c-----------------c----------------------------------c--ccccccceEec--ceeeeecccc
Confidence 0 0 0 02233334433 4557777888
Q ss_pred CCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeec------cccc
Q 005140 485 SPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATA------EHFM 557 (712)
Q Consensus 485 ~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~------~~~~ 557 (712)
+ +|++||+++.. +....+ ++.|+++..+++|..|.+++. |.++.+.|+.+.++.... ....
T Consensus 322 k---kvRfwD~Rs~~------~~~sv~~gg~vtSl~ls~~g~~lLsssR---Ddtl~viDlRt~eI~~~~sA~g~k~asD 389 (459)
T KOG0288|consen 322 K---KVRFWDIRSAD------KTRSVPLGGRVTSLDLSMDGLELLSSSR---DDTLKVIDLRTKEIRQTFSAEGFKCASD 389 (459)
T ss_pred c---ceEEEeccCCc------eeeEeecCcceeeEeeccCCeEEeeecC---CCceeeeecccccEEEEeeccccccccc
Confidence 8 89999998765 455555 447999999999999999987 999999999987766542 1234
Q ss_pred eeeEEECCCCCEEEEEEccceeccccEEEEEecCceeeee----cc-cceeeeEEecCCCCCCChhhHHHH
Q 005140 558 ATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRT----LK-DHFFQFLWRPRPPSFLTPEKEEEI 623 (712)
Q Consensus 558 v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~----~~-~~i~~~~w~p~~~~l~s~~~d~~i 623 (712)
.+.+.|||+|.|+++|+. |+.|+||++.+..+... +. ..|++++|+|.|..|++++.++.+
T Consensus 390 wtrvvfSpd~~YvaAGS~-----dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v 455 (459)
T KOG0288|consen 390 WTRVVFSPDGSYVAAGSA-----DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAV 455 (459)
T ss_pred cceeEECCCCceeeeccC-----CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcce
Confidence 788999999999999999 99999999885544433 22 269999999999999998876543
No 111
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=7.1e-20 Score=169.35 Aligned_cols=279 Identities=14% Similarity=0.184 Sum_probs=193.7
Q ss_pred eeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccccc----ccccCeeeEEECCCC
Q 005140 298 MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKS----LKVENVMDFSWSPTD 372 (712)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~----~~~~~v~~~~~sp~~ 372 (712)
+..+++|...++ +++||. ||++||+++ |++|++|++..+....... ...+..+.+.|+||-
T Consensus 79 ~~~LKgH~~~vt-------------~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc 144 (420)
T KOG2096|consen 79 VSVLKGHKKEVT-------------DVAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDC 144 (420)
T ss_pred hhhhhccCCcee-------------eeEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCc
Confidence 456778888775 799999 999999999 9999999998765433221 233456889999998
Q ss_pred CeEEEEeecCCCCCCCeEEEEEecCCcc-------cee---eeeeeeecceeEEECcCCCEEEEEEcccccccccccccE
Q 005140 373 PIISLFVPELGGGNQPARVSLVQIPSKE-------ELR---QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGF 442 (712)
Q Consensus 373 ~~la~~~~~~~~~~~~~~i~~~~~~~~~-------~~~---~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~ 442 (712)
+.+++++. .+...+++...-.+.. ... ....+.+....+-....+.+|++++.+.. +
T Consensus 145 ~s~vv~~~----~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~---------i 211 (420)
T KOG2096|consen 145 KSVVVSVK----RGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTK---------I 211 (420)
T ss_pred ceEEEEEc----cCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCc---------E
Confidence 88887643 3344444443322211 011 11223444455556678889999988877 8
Q ss_pred EEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeeccc-c-cCceeEEEEeCCC--ceeEE
Q 005140 443 ELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQ-H-AGRVSKLTTLKGK--QANAL 518 (712)
Q Consensus 443 ~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~-~-~~~~~~~~~~~~~--~v~~l 518 (712)
.||++... .... +......-+..+.||+|+++++++-.- .|++|.+--+. + -.....+..+.+| .|..+
T Consensus 212 ~lw~lkGq--~L~~--idtnq~~n~~aavSP~GRFia~~gFTp---DVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~ 284 (420)
T KOG2096|consen 212 CLWDLKGQ--LLQS--IDTNQSSNYDAAVSPDGRFIAVSGFTP---DVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAA 284 (420)
T ss_pred EEEecCCc--eeee--eccccccccceeeCCCCcEEEEecCCC---CceEEEEEeccCcchhhhhhhheeccchhheeee
Confidence 99998732 2111 111233455678999999999987755 79999974221 1 1223455667777 58999
Q ss_pred EEccCCCeEEEEeccCCCceEEEEECCc-------ceeeeec------cccceeeEEECCCCCEEEEEEccceeccccEE
Q 005140 519 FWSPSGRFIVLAGLKGFNGQLEFYNVDE-------LETMATA------EHFMATDVEWDPTGRYVATAVTSVHEMENGFN 585 (712)
Q Consensus 519 ~~spdg~~l~~~~~~~~dg~v~iwd~~~-------~~~~~~~------~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~ 585 (712)
+|||+.+.+++.+. ||.++|||.+- .+++..+ ..+....++.||.|+.||.+.. ..++
T Consensus 285 aFsn~S~r~vtvSk---DG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g------s~l~ 355 (420)
T KOG2096|consen 285 AFSNSSTRAVTVSK---DGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG------SDLK 355 (420)
T ss_pred eeCCCcceeEEEec---CCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC------CceE
Confidence 99999999999999 99999999872 2223222 1233448999999999998887 6788
Q ss_pred EEEec-Cce---eeeecccceeeeEEecCCCCCCChhh
Q 005140 586 IWSFN-GKL---LYRTLKDHFFQFLWRPRPPSFLTPEK 619 (712)
Q Consensus 586 iw~~~-g~~---~~~~~~~~i~~~~w~p~~~~l~s~~~ 619 (712)
++... |+. +...|.+.|.+++|+|+|++++|+++
T Consensus 356 ~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 356 VFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD 393 (420)
T ss_pred EEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc
Confidence 88765 443 33457889999999999999999875
No 112
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=6.4e-19 Score=171.58 Aligned_cols=286 Identities=13% Similarity=0.153 Sum_probs=204.7
Q ss_pred EEEecCc--eEEeecccCcceeeeecCCC----eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceee-ec
Q 005140 229 ATVHRQG--AAVWGGANTFNRLMRYAHPQ----VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMR-DF 301 (712)
Q Consensus 229 at~~~~~--i~iw~~~~~~~~~~~~~~~~----v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~-~~ 301 (712)
.+++.+. +.+||+. ++....++.... -..-+. .+.|++++.... ..|.+|.+....... .+
T Consensus 11 sssS~d~~~~~~~dl~-TGt~~~~ykg~~~a~~~sl~~l--~~~yllsaq~~r---------p~l~vw~i~k~~~~~q~~ 78 (476)
T KOG0646|consen 11 SSSSFDPINCIVWDLR-TGTSLLQYKGSYLAQAASLTAL--NNEYLLSAQLKR---------PLLHVWEILKKDQVVQYI 78 (476)
T ss_pred eccCCCCcceeEEecC-CCceeEEecCcccccchhhhhh--chhheeeecccC---------ccccccccCchhhhhhhc
Confidence 3344443 6799999 777777775331 111122 237888877662 368899985444333 11
Q ss_pred cCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEee
Q 005140 302 KGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVP 380 (712)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~ 380 (712)
..+ +.+. +++-+| +|.|++.++ .+.|++|.+.+|.++.....|...|+++.|+-||.+|++
T Consensus 79 v~P-g~v~-------------al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiT--- 140 (476)
T KOG0646|consen 79 VLP-GPVH-------------ALASSN-LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIIT--- 140 (476)
T ss_pred ccc-ccee-------------eeecCC-CceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEe---
Confidence 111 1111 678899 999999997 999999999999999988899999999999999999999
Q ss_pred cCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEec
Q 005140 381 ELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELD 460 (712)
Q Consensus 381 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~ 460 (712)
+|.|+.+.+|..-. ..+++... .+.....+.
T Consensus 141 --gskDg~V~vW~l~~-------------------lv~a~~~~----------------------------~~~p~~~f~ 171 (476)
T KOG0646|consen 141 --GSKDGAVLVWLLTD-------------------LVSADNDH----------------------------SVKPLHIFS 171 (476)
T ss_pred --cCCCccEEEEEEEe-------------------ecccccCC----------------------------Cccceeeec
Confidence 88999888886531 01111111 111113345
Q ss_pred CCCCceEEEEEeeC--CCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCc
Q 005140 461 NKNDKIIAFAWEPK--GHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNG 537 (712)
Q Consensus 461 ~h~~~v~~~~~sp~--g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg 537 (712)
.|.-+|+++...+. ..++++++.|. ++++||+..+. ++.++. ..++++++.+|-++.+++|+. +|
T Consensus 172 ~HtlsITDl~ig~Gg~~~rl~TaS~D~---t~k~wdlS~g~------LLlti~fp~si~av~lDpae~~~yiGt~---~G 239 (476)
T KOG0646|consen 172 DHTLSITDLQIGSGGTNARLYTASEDR---TIKLWDLSLGV------LLLTITFPSSIKAVALDPAERVVYIGTE---EG 239 (476)
T ss_pred cCcceeEEEEecCCCccceEEEecCCc---eEEEEEeccce------eeEEEecCCcceeEEEcccccEEEecCC---cc
Confidence 78888999887764 46899999999 99999998765 454443 557899999999999999998 99
Q ss_pred eEEEEECCcce----------------e--eeecccc--ceeeEEECCCCCEEEEEEccceeccccEEEEEecCceeee-
Q 005140 538 QLEFYNVDELE----------------T--MATAEHF--MATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYR- 596 (712)
Q Consensus 538 ~v~iwd~~~~~----------------~--~~~~~~~--~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~- 596 (712)
.|.+.++.+.. . ...+|.. .|++++.|-||..|++|+. ||.|.|||+...++.+
T Consensus 240 ~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~-----dg~VcvWdi~S~Q~iRt 314 (476)
T KOG0646|consen 240 KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDE-----DGKVCVWDIYSKQCIRT 314 (476)
T ss_pred eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCC-----CCCEEEEecchHHHHHH
Confidence 99998875321 1 1124555 8999999999999999999 9999999998654332
Q ss_pred e--cccceeeeEEecC
Q 005140 597 T--LKDHFFQFLWRPR 610 (712)
Q Consensus 597 ~--~~~~i~~~~w~p~ 610 (712)
. ..++|+.+.+.|-
T Consensus 315 l~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 315 LQTSKGPVTNLQINPL 330 (476)
T ss_pred HhhhccccceeEeecc
Confidence 2 2366666666543
No 113
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.86 E-value=1.4e-19 Score=174.12 Aligned_cols=268 Identities=12% Similarity=0.223 Sum_probs=203.2
Q ss_pred eEEEEECC-eeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCC-CeeEEE
Q 005140 184 QFVIRSGT-DTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHP-QVKLID 260 (712)
Q Consensus 184 ~~~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~-~v~~i~ 260 (712)
.++.+.|. ..+++++. ...+....|+||...|+.+.|+|+...+++++.+. |+||.............|. .|+.+.
T Consensus 232 ~~ilTGG~d~~av~~d~-~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls 310 (506)
T KOG0289|consen 232 SKILTGGEDKTAVLFDK-PSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLS 310 (506)
T ss_pred CcceecCCCCceEEEec-chhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeee
Confidence 34445554 48889888 57778889999999999999999999999999998 7899987444444444455 599999
Q ss_pred ecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-C
Q 005140 261 FSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-K 339 (712)
Q Consensus 261 ~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d 339 (712)
.+|.|.||++++.+ ++..+.|+++|..+.........+ .+.+.+|+| ||.+|+++. |
T Consensus 311 ~h~tgeYllsAs~d----------~~w~Fsd~~~g~~lt~vs~~~s~v-----------~~ts~~fHp-DgLifgtgt~d 368 (506)
T KOG0289|consen 311 LHPTGEYLLSASND----------GTWAFSDISSGSQLTVVSDETSDV-----------EYTSAAFHP-DGLIFGTGTPD 368 (506)
T ss_pred eccCCcEEEEecCC----------ceEEEEEccCCcEEEEEeeccccc-----------eeEEeeEcC-CceEEeccCCC
Confidence 99999999999999 999999999999887665542222 133789999 999999999 9
Q ss_pred CeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECc
Q 005140 340 NMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS 419 (712)
Q Consensus 340 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 419 (712)
+.++|||+.+...+.++..|.+.|..++|+-+|-+|++ +..|+.+++ ||+...+
T Consensus 369 ~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat-----~add~~V~l--wDLRKl~------------------- 422 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLAT-----AADDGSVKL--WDLRKLK------------------- 422 (506)
T ss_pred ceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEE-----EecCCeEEE--EEehhhc-------------------
Confidence 99999999998888888889999999999999999998 555555443 3332211
Q ss_pred CCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeeccc
Q 005140 420 SGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQ 499 (712)
Q Consensus 420 ~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~ 499 (712)
....+.+.. ...+.++.|.+.|.+|++++. .|+||-.....
T Consensus 423 ---------------------------------n~kt~~l~~-~~~v~s~~fD~SGt~L~~~g~-----~l~Vy~~~k~~ 463 (506)
T KOG0289|consen 423 ---------------------------------NFKTIQLDE-KKEVNSLSFDQSGTYLGIAGS-----DLQVYICKKKT 463 (506)
T ss_pred ---------------------------------ccceeeccc-cccceeEEEcCCCCeEEeecc-----eeEEEEEeccc
Confidence 111122211 336889999999999999966 45555443222
Q ss_pred ccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEEC
Q 005140 500 HAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNV 544 (712)
Q Consensus 500 ~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~ 544 (712)
..+..+..+..+ ..+++.|..+.+++++++. |..++++.+
T Consensus 464 --k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~sm---d~~l~~~a~ 505 (506)
T KOG0289|consen 464 --KSWTEIKELADHSGLSTGVRFGEHAQYLASTSM---DAILRLYAL 505 (506)
T ss_pred --ccceeeehhhhcccccceeeecccceEEeeccc---hhheEEeec
Confidence 224456655544 5788999999999999998 888888754
No 114
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=5.5e-19 Score=163.60 Aligned_cols=241 Identities=15% Similarity=0.166 Sum_probs=181.1
Q ss_pred CcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee-cCCC-eeEEEecCCCC--EEEEEcCCCCCCC
Q 005140 205 PEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-AHPQ-VKLIDFSPGEK--YLVTYSSHEPSNP 279 (712)
Q Consensus 205 ~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~~~-v~~i~~Spdg~--~l~t~s~d~~~~~ 279 (712)
+...++.|..++++++.| |.|+|+|+.|. |.|||.. +...+..+ .|.+ |+++.|.++-. .|++|+.|
T Consensus 35 ~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~-k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdD----- 106 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMR-KRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDD----- 106 (362)
T ss_pred ccccccccccceeEEEec--ceeEeccCCCCcEEEEecc-chhhhcceeccccceEEEEecCCcchhheeeecCC-----
Confidence 355778999999999987 89999999988 8899999 66655554 5655 99999999875 89999999
Q ss_pred cCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccc
Q 005140 280 RDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSL 358 (712)
Q Consensus 280 ~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~ 358 (712)
|.|.+|++..-.++.++++|...++ .++..| .|++..+.+ |+.+++|++-+|+.-....+
T Consensus 107 -----G~i~iw~~~~W~~~~slK~H~~~Vt-------------~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L 167 (362)
T KOG0294|consen 107 -----GHIIIWRVGSWELLKSLKAHKGQVT-------------DLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNL 167 (362)
T ss_pred -----CcEEEEEcCCeEEeeeecccccccc-------------eeEecC-CCceEEEEcCCceeeeehhhcCccceeecc
Confidence 9999999999999999999988764 689999 999888877 99999999988775443333
Q ss_pred cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccc
Q 005140 359 KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKST 438 (712)
Q Consensus 359 ~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~ 438 (712)
... ...+.|+|.|.++++.. ..+|-+|.+..-+.+...... .....+.| -++..|+++.++..
T Consensus 168 ~~~-at~v~w~~~Gd~F~v~~--------~~~i~i~q~d~A~v~~~i~~~-~r~l~~~~-l~~~~L~vG~d~~~------ 230 (362)
T KOG0294|consen 168 KNK-ATLVSWSPQGDHFVVSG--------RNKIDIYQLDNASVFREIENP-KRILCATF-LDGSELLVGGDNEW------ 230 (362)
T ss_pred CCc-ceeeEEcCCCCEEEEEe--------ccEEEEEecccHhHhhhhhcc-ccceeeee-cCCceEEEecCCce------
Confidence 222 34489999999888732 224666666554433322211 11222223 35678888888765
Q ss_pred cccEEEEEEecCCcceeEEEecCCCCceEEEEE--eeCCCEEEEEEcCCCCCeEEEEEeecc
Q 005140 439 YTGFELFRIKERDIPIEVLELDNKNDKIIAFAW--EPKGHRFAVIHGDSPRPDISFYSMRTA 498 (712)
Q Consensus 439 ~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~--sp~g~~l~~~~~d~~~~~v~i~d~~~~ 498 (712)
+.+|+-+.. .+ ...+.+|...|.++.+ .|++.+|++++.|| .|++||++..
T Consensus 231 ---i~~~D~ds~-~~--~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG---~I~vWd~~~~ 283 (362)
T KOG0294|consen 231 ---ISLKDTDSD-TP--LTEFLAHENRVKDIASYTNPEHEYLVTASSDG---FIKVWDIDME 283 (362)
T ss_pred ---EEEeccCCC-cc--ceeeecchhheeeeEEEecCCceEEEEeccCc---eEEEEEcccc
Confidence 667776542 22 2456689999999874 56789999999999 9999999754
No 115
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=6e-20 Score=178.16 Aligned_cols=271 Identities=13% Similarity=0.254 Sum_probs=200.0
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc---eeeeccCCCcccccCCCCCcCCCCcCeEEecC
Q 005140 252 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK---VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGG 328 (712)
Q Consensus 252 ~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 328 (712)
.|.+|+++.|+|.-..|++++.| ++++||.+ +|+ .+..+.....++. +.+|.|
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d----------~~lrifqv-DGk~N~~lqS~~l~~fPi~-------------~a~f~p 267 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLD----------GTLRIFQV-DGKVNPKLQSIHLEKFPIQ-------------KAEFAP 267 (514)
T ss_pred CcCCceEEEecCCCceEEEecCC----------CcEEEEEe-cCccChhheeeeeccCccc-------------eeeecC
Confidence 35679999999999999999999 99999987 443 3444443333331 578999
Q ss_pred CCCC-EEEEec-CCeEEEEEcCCceecccccc---cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcccee
Q 005140 329 GKDK-YFAKLG-KNMISVYETESFTLIDKKSL---KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELR 403 (712)
Q Consensus 329 ~dg~-~la~~~-d~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~ 403 (712)
+|+ .+++++ ...+..||+.+.+...-... ....+..+..||++++|++ .+..+.|.++...+++.+
T Consensus 268 -~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~-------~G~~G~I~lLhakT~eli- 338 (514)
T KOG2055|consen 268 -NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAI-------AGNNGHIHLLHAKTKELI- 338 (514)
T ss_pred -CCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEE-------cccCceEEeehhhhhhhh-
Confidence 998 777777 88899999998775532221 1235788999999999998 344444444332222111
Q ss_pred eeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEc
Q 005140 404 QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG 483 (712)
Q Consensus 404 ~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~ 483 (712)
..+.+ .+.|.+++|+.+|+.|+++++
T Consensus 339 ---------------------------------------------------~s~Ki---eG~v~~~~fsSdsk~l~~~~~ 364 (514)
T KOG2055|consen 339 ---------------------------------------------------TSFKI---EGVVSDFTFSSDSKELLASGG 364 (514)
T ss_pred ---------------------------------------------------heeee---ccEEeeEEEecCCcEEEEEcC
Confidence 11233 788999999999999999999
Q ss_pred CCCCCeEEEEEeecccccCceeEEEEeC-CC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcc------eeeeec-
Q 005140 484 DSPRPDISFYSMRTAQHAGRVSKLTTLK-GK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL------ETMATA- 553 (712)
Q Consensus 484 d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~------~~~~~~- 553 (712)
+| .|++||++... .++.+. .+ .-++++.|++|.|||+|+. .|.|.|||.++. +.+.+.
T Consensus 365 ~G---eV~v~nl~~~~------~~~rf~D~G~v~gts~~~S~ng~ylA~GS~---~GiVNIYd~~s~~~s~~PkPik~~d 432 (514)
T KOG2055|consen 365 TG---EVYVWNLRQNS------CLHRFVDDGSVHGTSLCISLNGSYLATGSD---SGIVNIYDGNSCFASTNPKPIKTVD 432 (514)
T ss_pred Cc---eEEEEecCCcc------eEEEEeecCccceeeeeecCCCceEEeccC---cceEEEeccchhhccCCCCchhhhh
Confidence 99 99999997653 444443 22 3478999999999999998 999999997632 223332
Q ss_pred -cccceeeEEECCCCCEEEEEEccceeccccEEEEEecCceeee------ecccceeeeEEecCCCCCCChhhHHHHH
Q 005140 554 -EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYR------TLKDHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 554 -~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~------~~~~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
-...|++++|+||++.||.+|. ..++.+++-.+....++. ...+.+++++|+|.+-+++.+.+.+.+.
T Consensus 433 NLtt~Itsl~Fn~d~qiLAiaS~---~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~ 507 (514)
T KOG2055|consen 433 NLTTAITSLQFNHDAQILAIASR---VKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVH 507 (514)
T ss_pred hhheeeeeeeeCcchhhhhhhhh---ccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCcee
Confidence 2367899999999999999987 347899998876554442 2457899999999999999988877654
No 116
>PTZ00421 coronin; Provisional
Probab=99.85 E-value=4.3e-19 Score=188.20 Aligned_cols=229 Identities=14% Similarity=0.221 Sum_probs=164.0
Q ss_pred cccCCCcccceEEEcC-CCcEEEEEecCc-eEEeecccCc------ceeeee-cCC-CeeEEEecCCC-CEEEEEcCCCC
Q 005140 208 VYKRSYWTESFVQWSP-LGTYLATVHRQG-AAVWGGANTF------NRLMRY-AHP-QVKLIDFSPGE-KYLVTYSSHEP 276 (712)
Q Consensus 208 ~~~~~~~~v~~v~~Sp-dg~~lat~~~~~-i~iw~~~~~~------~~~~~~-~~~-~v~~i~~Spdg-~~l~t~s~d~~ 276 (712)
.+.+|...|++++|+| ++.+||+++.|+ |+||++.... ..+..+ .|. .|.+++|+|++ .+|++++.|
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D-- 147 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD-- 147 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC--
Confidence 4789999999999999 899999999999 8899987221 123333 344 59999999986 699999999
Q ss_pred CCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccc
Q 005140 277 SNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDK 355 (712)
Q Consensus 277 ~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~ 355 (712)
++|+|||+.+++.+..+.+|...+. +++|+| +|.+|++++ |+.|+|||+.+++.+..
T Consensus 148 --------gtVrIWDl~tg~~~~~l~~h~~~V~-------------sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~t 205 (493)
T PTZ00421 148 --------MVVNVWDVERGKAVEVIKCHSDQIT-------------SLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSS 205 (493)
T ss_pred --------CEEEEEECCCCeEEEEEcCCCCceE-------------EEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEE
Confidence 9999999999999999988877653 799999 999999999 99999999998887665
Q ss_pred ccccccC-eeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc-ceeeeeeee-ecceeEEECcCCCEEEEEEc-cc
Q 005140 356 KSLKVEN-VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE-ELRQKNLFS-VSDCKMYWQSSGDYLAVKVD-RY 431 (712)
Q Consensus 356 ~~~~~~~-v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~-~~~~~~~~s~~g~~l~~~~~-~~ 431 (712)
...|... +..+.|+|++..|++... +......|.+|++.... .+....... .......|++++..|++++. ++
T Consensus 206 l~~H~~~~~~~~~w~~~~~~ivt~G~---s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg 282 (493)
T PTZ00421 206 VEAHASAKSQRCLWAKRKDLIITLGC---SKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEG 282 (493)
T ss_pred EecCCCCcceEEEEcCCCCeEEEEec---CCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCC
Confidence 5555543 456789998877765210 11223345555654432 222222221 12233468999999988763 55
Q ss_pred ccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeC
Q 005140 432 TKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK 474 (712)
Q Consensus 432 ~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~ 474 (712)
. +++|++.... ....... .+..++..++|.|.
T Consensus 283 ~---------Iriwdl~~~~-~~~~~~~-~s~~~~~g~~~~pk 314 (493)
T PTZ00421 283 N---------IRCFELMNER-LTFCSSY-SSVEPHKGLCMMPK 314 (493)
T ss_pred e---------EEEEEeeCCc-eEEEeec-cCCCCCcceEeccc
Confidence 5 8999998643 2222222 34566778888874
No 117
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=1.3e-18 Score=160.94 Aligned_cols=269 Identities=13% Similarity=0.164 Sum_probs=188.9
Q ss_pred CcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEE
Q 005140 213 YWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIF 290 (712)
Q Consensus 213 ~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iw 290 (712)
...|+.+.|||.+..|+.++-|| +++|++. .......+.|.. +.+++|.+ ...+++|+.| |.|+.+
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~-~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~d----------g~vr~~ 80 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVP-ANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLD----------GQVRRY 80 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEecc-chhhhhheecCCceeeeeccC-CceEEEeccC----------ceEEEE
Confidence 46789999999999999999999 8999999 677777777765 99999987 5678999999 999999
Q ss_pred EccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEEC
Q 005140 291 DVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWS 369 (712)
Q Consensus 291 d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 369 (712)
|+.++.... +..|...+. ++..++ -...+++++ |++|++||.......... -....|.++
T Consensus 81 Dln~~~~~~-igth~~~i~-------------ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~-d~~kkVy~~--- 141 (323)
T KOG1036|consen 81 DLNTGNEDQ-IGTHDEGIR-------------CIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTF-DQGKKVYCM--- 141 (323)
T ss_pred EecCCccee-eccCCCceE-------------EEEeec-cCCeEEEcccCccEEEEecccccccccc-ccCceEEEE---
Confidence 998877544 334444432 788888 777788888 999999998842221110 000112222
Q ss_pred CCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEec
Q 005140 370 PTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKE 449 (712)
Q Consensus 370 p~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 449 (712)
+-.|..|+++..+.. +.+|+++.
T Consensus 142 ------------------------------------------------~v~g~~LvVg~~~r~---------v~iyDLRn 164 (323)
T KOG1036|consen 142 ------------------------------------------------DVSGNRLVVGTSDRK---------VLIYDLRN 164 (323)
T ss_pred ------------------------------------------------eccCCEEEEeecCce---------EEEEEccc
Confidence 223444445444433 45666665
Q ss_pred CCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEee----cccccCceeEEEEeC-----CCceeEEEE
Q 005140 450 RDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMR----TAQHAGRVSKLTTLK-----GKQANALFW 520 (712)
Q Consensus 450 ~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~----~~~~~~~~~~~~~~~-----~~~v~~l~~ 520 (712)
...+.... -..-+..+.++++-|++.-+++++-+|.. .+..+|.. ..+.. ++...... ..+|++++|
T Consensus 165 ~~~~~q~r-eS~lkyqtR~v~~~pn~eGy~~sSieGRV-avE~~d~s~~~~skkya--FkCHr~~~~~~~~~yPVNai~F 240 (323)
T KOG1036|consen 165 LDEPFQRR-ESSLKYQTRCVALVPNGEGYVVSSIEGRV-AVEYFDDSEEAQSKKYA--FKCHRLSEKDTEIIYPVNAIAF 240 (323)
T ss_pred ccchhhhc-cccceeEEEEEEEecCCCceEEEeecceE-EEEccCCchHHhhhcee--EEeeecccCCceEEEEeceeEe
Confidence 44433111 11226788999999999999999999822 34445544 11111 12222211 127899999
Q ss_pred ccCCCeEEEEeccCCCceEEEEECCcceeeeeccc--cceeeEEECCCCCEEEEEEcc
Q 005140 521 SPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEH--FMATDVEWDPTGRYVATAVTS 576 (712)
Q Consensus 521 spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~--~~v~~~~~spdg~~l~t~s~~ 576 (712)
+|--..+++|+. ||.|.+||+.+.+.+...+. ..|.+++|+.||..||+++..
T Consensus 241 hp~~~tfaTgGs---DG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy 295 (323)
T KOG1036|consen 241 HPIHGTFATGGS---DGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSY 295 (323)
T ss_pred ccccceEEecCC---CceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEech
Confidence 999999999998 99999999998888887665 468999999999999999874
No 118
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=7e-20 Score=169.06 Aligned_cols=285 Identities=15% Similarity=0.198 Sum_probs=217.9
Q ss_pred CCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee-cCCC-eeEEEecCCCCEEEEEcCCCCCCCc
Q 005140 204 KPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-AHPQ-VKLIDFSPGEKYLVTYSSHEPSNPR 280 (712)
Q Consensus 204 ~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~ 280 (712)
.....|.+|...|..++-......+.+++.|. ..||.++ ++.++.++ .|.+ |.+|.|++.+..+++++.|
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~E-sg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD------ 211 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLE-SGACLATYTGHTGSVNSIKFHNSGLLLLTASGD------ 211 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeec-cccceeeecccccceeeEEeccccceEEEccCC------
Confidence 34556789999988888777777899999998 5699999 88988888 3555 9999999999999999999
Q ss_pred CCCccEEEEEEc------cC------------------------------C----ceeeeccCCCcccccCCCCCcCCCC
Q 005140 281 DANRVVINIFDV------RT------------------------------G----KVMRDFKGSADEFAVGGTGGVAGVS 320 (712)
Q Consensus 281 ~~~~~~I~iwd~------~~------------------------------g----~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (712)
++..||.. .. | .++..|.+|...+.
T Consensus 212 ----~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~----------- 276 (481)
T KOG0300|consen 212 ----ETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVS----------- 276 (481)
T ss_pred ----cchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceE-----------
Confidence 66677752 10 0 12334555554442
Q ss_pred cCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc
Q 005140 321 WPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 399 (712)
Q Consensus 321 ~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 399 (712)
+..|-. .|+.+++++ |.+..+||++++.++..+..|....+..+-+|..+++++ ++.|.+.++|.|.
T Consensus 277 --a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvT-----sSrDtTFRLWDFR---- 344 (481)
T KOG0300|consen 277 --ACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVT-----SSRDTTFRLWDFR---- 344 (481)
T ss_pred --ehhhhc-CcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEE-----eccCceeEeccch----
Confidence 567888 899999999 999999999999999888888887888888888777777 5566665555543
Q ss_pred cceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEE
Q 005140 400 EELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFA 479 (712)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~ 479 (712)
+. ++ ..--+.+|...|++..|.-+ ..++
T Consensus 345 -------------------------------------------------ea-I~-sV~VFQGHtdtVTS~vF~~d-d~vV 372 (481)
T KOG0300|consen 345 -------------------------------------------------EA-IQ-SVAVFQGHTDTVTSVVFNTD-DRVV 372 (481)
T ss_pred -------------------------------------------------hh-cc-eeeeecccccceeEEEEecC-Ccee
Confidence 11 11 01225689999999999854 5678
Q ss_pred EEEcCCCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeee------e
Q 005140 480 VIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA------T 552 (712)
Q Consensus 480 ~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~------~ 552 (712)
+++.|. +|++||+++... ++.++. ..+++-++.+..+..|++--. +..|++||+++..+.. .
T Consensus 373 SgSDDr---TvKvWdLrNMRs-----plATIRtdS~~NRvavs~g~~iIAiPhD---NRqvRlfDlnG~RlaRlPrtsRq 441 (481)
T KOG0300|consen 373 SGSDDR---TVKVWDLRNMRS-----PLATIRTDSPANRVAVSKGHPIIAIPHD---NRQVRLFDLNGNRLARLPRTSRQ 441 (481)
T ss_pred ecCCCc---eEEEeeeccccC-----cceeeecCCccceeEeecCCceEEeccC---CceEEEEecCCCccccCCccccc
Confidence 888888 999999987654 566665 457899999998888888776 8899999999654432 3
Q ss_pred ccccceeeEEECCCC--CEEEEEEccceeccccEEEEEec
Q 005140 553 AEHFMATDVEWDPTG--RYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 553 ~~~~~v~~~~~spdg--~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
+|..+|++++|..+- ..|++++. |..+.=|+++
T Consensus 442 gHrRMV~c~AW~eehp~cnLftcGF-----DR~v~gW~in 476 (481)
T KOG0300|consen 442 GHRRMVTCCAWLEEHPACNLFTCGF-----DRMVAGWKIN 476 (481)
T ss_pred ccceeeeeeeccccCcccccccccc-----cceeeeeEec
Confidence 677899999998653 35778888 8999999876
No 119
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.85 E-value=1.7e-20 Score=175.20 Aligned_cols=273 Identities=15% Similarity=0.189 Sum_probs=205.6
Q ss_pred CCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee-cCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEE
Q 005140 212 SYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-AHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVIN 288 (712)
Q Consensus 212 ~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~ 288 (712)
....|+|+++. ...+++|..|. |+|||.. +...+..+ +|.+ |.|+.| |.+.|++|+.| .+|+
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n-~~~c~~~L~GHtGSVLCLqy--d~rviisGSSD----------sTvr 260 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKN-SLECLKILTGHTGSVLCLQY--DERVIVSGSSD----------STVR 260 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccc-cHHHHHhhhcCCCcEEeeec--cceEEEecCCC----------ceEE
Confidence 44678899884 55789999998 8899998 66655544 4555 999988 56799999999 8999
Q ss_pred EEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceec---ccccccccCee
Q 005140 289 IFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLI---DKKSLKVENVM 364 (712)
Q Consensus 289 iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~---~~~~~~~~~v~ 364 (712)
|||+.+|+++.++-+|...+. .+.|+. .++++++ |.++.+|++.+...+ .....|...|+
T Consensus 261 vWDv~tge~l~tlihHceaVL-------------hlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 261 VWDVNTGEPLNTLIHHCEAVL-------------HLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred EEeccCCchhhHHhhhcceeE-------------EEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 999999999999999988763 577755 7899999 999999998855432 22345777889
Q ss_pred eEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEE
Q 005140 365 DFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFEL 444 (712)
Q Consensus 365 ~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l 444 (712)
.+.|+. ++|++ +++|.++++| ++.+.+.++..+.+.-.+.++ .-.|+++++++.+.+ +++
T Consensus 325 vVdfd~--kyIVs-----ASgDRTikvW--~~st~efvRtl~gHkRGIACl--QYr~rlvVSGSSDnt---------IRl 384 (499)
T KOG0281|consen 325 VVDFDD--KYIVS-----ASGDRTIKVW--STSTCEFVRTLNGHKRGIACL--QYRDRLVVSGSSDNT---------IRL 384 (499)
T ss_pred eecccc--ceEEE-----ecCCceEEEE--eccceeeehhhhcccccceeh--hccCeEEEecCCCce---------EEE
Confidence 888864 58888 7788877755 556666677776666666555 456889999999988 899
Q ss_pred EEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCc---eeEEEEeC--CCceeEEE
Q 005140 445 FRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGR---VSKLTTLK--GKQANALF 519 (712)
Q Consensus 445 ~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~---~~~~~~~~--~~~v~~l~ 519 (712)
|++..... ...+.+|..-|.++.| |.+.+++|+.|| +|++||+.++..... ...+.++. .+.|..+.
T Consensus 385 wdi~~G~c---LRvLeGHEeLvRciRF--d~krIVSGaYDG---kikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQ 456 (499)
T KOG0281|consen 385 WDIECGAC---LRVLEGHEELVRCIRF--DNKRIVSGAYDG---KIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQ 456 (499)
T ss_pred EeccccHH---HHHHhchHHhhhheee--cCceeeeccccc---eEEEEecccccCCcccccchHHHhhhhccceeEEEe
Confidence 99875432 2346789999999999 678999999999 999999976543200 00112222 22455666
Q ss_pred EccCCCeEEEEeccCCCceEEEEECCcce
Q 005140 520 WSPSGRFIVLAGLKGFNGQLEFYNVDELE 548 (712)
Q Consensus 520 ~spdg~~l~~~~~~~~dg~v~iwd~~~~~ 548 (712)
| |...+++++. |.+|.|||+.++.
T Consensus 457 F--D~fqIvsssH---ddtILiWdFl~~~ 480 (499)
T KOG0281|consen 457 F--DEFQIISSSH---DDTILIWDFLNGP 480 (499)
T ss_pred e--cceEEEeccC---CCeEEEEEcCCCC
Confidence 6 5678888888 9999999987553
No 120
>PTZ00420 coronin; Provisional
Probab=99.85 E-value=1.5e-18 Score=184.68 Aligned_cols=239 Identities=11% Similarity=0.121 Sum_probs=161.2
Q ss_pred cEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCC-CCEEEEec-CCeEEEEEcCCcee-c-------c
Q 005140 285 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK-DKYFAKLG-KNMISVYETESFTL-I-------D 354 (712)
Q Consensus 285 ~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d-g~~la~~~-d~~i~iwd~~~~~~-~-------~ 354 (712)
+.|++|+......+..+.+|...+. +++|+| + +.+||+++ |++|+||++.++.. . .
T Consensus 54 gvI~L~~~~r~~~v~~L~gH~~~V~-------------~lafsP-~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~ 119 (568)
T PTZ00420 54 GAIRLENQMRKPPVIKLKGHTSSIL-------------DLQFNP-CFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQC 119 (568)
T ss_pred eEEEeeecCCCceEEEEcCCCCCEE-------------EEEEcC-CCCCEEEEEeCCCeEEEEECCCCCccccccccceE
Confidence 7899999877778888999987764 799999 7 78999999 99999999985431 1 1
Q ss_pred cccccccCeeeEEECCCCCeE-EEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccc
Q 005140 355 KKSLKVENVMDFSWSPTDPII-SLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTK 433 (712)
Q Consensus 355 ~~~~~~~~v~~~~~sp~~~~l-a~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~ 433 (712)
....|...|.+++|+|++..+ ++ ++.|+.++||
T Consensus 120 ~L~gH~~~V~sVaf~P~g~~iLaS-----gS~DgtIrIW----------------------------------------- 153 (568)
T PTZ00420 120 ILKGHKKKISIIDWNPMNYYIMCS-----SGFDSFVNIW----------------------------------------- 153 (568)
T ss_pred EeecCCCcEEEEEECCCCCeEEEE-----EeCCCeEEEE-----------------------------------------
Confidence 122344557777777766544 33 3445444433
Q ss_pred ccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC
Q 005140 434 TKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK 513 (712)
Q Consensus 434 ~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~ 513 (712)
++..... ...+ .|...|.+++|+|+|.+|++++.|+ .|+|||++++. .+..+.+|
T Consensus 154 ------------Dl~tg~~---~~~i-~~~~~V~SlswspdG~lLat~s~D~---~IrIwD~Rsg~------~i~tl~gH 208 (568)
T PTZ00420 154 ------------DIENEKR---AFQI-NMPKKLSSLKWNIKGNLLSGTCVGK---HMHIIDPRKQE------IASSFHIH 208 (568)
T ss_pred ------------ECCCCcE---EEEE-ecCCcEEEEEECCCCCEEEEEecCC---EEEEEECCCCc------EEEEEecc
Confidence 3322111 0112 2356799999999999999999888 99999998754 44555544
Q ss_pred --ce-----eEEEEccCCCeEEEEeccC-CCceEEEEECCc-ceeeeec-cc---cceeeEEECCCCCEEEEEEccceec
Q 005140 514 --QA-----NALFWSPSGRFIVLAGLKG-FNGQLEFYNVDE-LETMATA-EH---FMATDVEWDPTGRYVATAVTSVHEM 580 (712)
Q Consensus 514 --~v-----~~l~~spdg~~l~~~~~~~-~dg~v~iwd~~~-~~~~~~~-~~---~~v~~~~~spdg~~l~t~s~~~~~~ 580 (712)
.+ ....|++++.+|++++... .+++|+|||+++ .+.+... +. +.+......++|.++++|+.
T Consensus 209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkG----- 283 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKG----- 283 (568)
T ss_pred cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEEC-----
Confidence 22 2234579999999988621 124899999985 4444331 11 22223333556889999999
Q ss_pred cccEEEEEecCceeeee----cccceeeeEEecCCCC
Q 005140 581 ENGFNIWSFNGKLLYRT----LKDHFFQFLWRPRPPS 613 (712)
Q Consensus 581 d~~v~iw~~~g~~~~~~----~~~~i~~~~w~p~~~~ 613 (712)
|+.|++|++....+... +..++..++|.|....
T Consensus 284 D~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~~ 320 (568)
T PTZ00420 284 DGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQIC 320 (568)
T ss_pred CCeEEEEEccCCcEEeecccccCCCccceEEcccccc
Confidence 99999999975443332 3366788999997543
No 121
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.85 E-value=3.3e-19 Score=189.11 Aligned_cols=274 Identities=14% Similarity=0.214 Sum_probs=212.6
Q ss_pred CCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeee-e-cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccE
Q 005140 211 RSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMR-Y-AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVV 286 (712)
Q Consensus 211 ~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~-~-~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~ 286 (712)
.+...+.|.+|. +.++++++.+. +.+|+.. .+..+.. + .|. +|.+++|..-+.+|++|+.| .+
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~-~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D----------~t 272 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLN-NGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTD----------KT 272 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecc-cceEEEeeccCCCCCceeEEEecCCCEEEEEecC----------Cc
Confidence 356778899998 56788888888 6699999 5555544 4 455 59999999888999999999 99
Q ss_pred EEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeee
Q 005140 287 INIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMD 365 (712)
Q Consensus 287 I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~ 365 (712)
++|||+.+|.+...+.+|...+ .+.+- .+.++++++ |.+|++|+++++..+.....|...|.+
T Consensus 273 ~rvWd~~sg~C~~~l~gh~stv---------------~~~~~-~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~ 336 (537)
T KOG0274|consen 273 ERVWDCSTGECTHSLQGHTSSV---------------RCLTI-DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNC 336 (537)
T ss_pred EEeEecCCCcEEEEecCCCceE---------------EEEEc-cCceEeeccCCceEEEEeccCcceEEEeccccccEEE
Confidence 9999999999999999998775 23344 557777777 999999999999888777668888999
Q ss_pred EEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEE
Q 005140 366 FSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELF 445 (712)
Q Consensus 366 ~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~ 445 (712)
+..+ +.++++ |+.++.++||.+. . ++
T Consensus 337 v~~~--~~~lvs-----gs~d~~v~VW~~~--~----------------------~~----------------------- 362 (537)
T KOG0274|consen 337 VQLD--EPLLVS-----GSYDGTVKVWDPR--T----------------------GK----------------------- 362 (537)
T ss_pred EEec--CCEEEE-----EecCceEEEEEhh--h----------------------ce-----------------------
Confidence 8887 677776 6666666655432 1 01
Q ss_pred EEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCC
Q 005140 446 RIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGR 525 (712)
Q Consensus 446 ~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~ 525 (712)
....+.+|...|.++.+.+. .+++.++.|+ .|++||+.+.. ..+.++.++.-..-.....++
T Consensus 363 ---------cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~---~IkvWdl~~~~-----~c~~tl~~h~~~v~~l~~~~~ 424 (537)
T KOG0274|consen 363 ---------CLKSLSGHTGRVYSLIVDSE-NRLLSGSLDT---TIKVWDLRTKR-----KCIHTLQGHTSLVSSLLLRDN 424 (537)
T ss_pred ---------eeeeecCCcceEEEEEecCc-ceEEeeeecc---ceEeecCCchh-----hhhhhhcCCcccccccccccc
Confidence 11345689999999987665 8999999998 99999998762 266777766433344555788
Q ss_pred eEEEEeccCCCceEEEEECCcceeeeec---cccceeeEEECCCCCEEEEEEccceeccccEEEEEec-Cceee
Q 005140 526 FIVLAGLKGFNGQLEFYNVDELETMATA---EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLY 595 (712)
Q Consensus 526 ~l~~~~~~~~dg~v~iwd~~~~~~~~~~---~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~ 595 (712)
+|++++. |++|++||..+++++.+. |...++.+++. -..+++++. |+.+.+||+. +....
T Consensus 425 ~Lvs~~a---D~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~-----~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 425 FLVSSSA---DGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSD-----DGSVKLWDLRSGTLIR 488 (537)
T ss_pred eeEeccc---cccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEec-----CCeeEEEecccCchhh
Confidence 9999998 999999999998888763 44778888877 456778888 8999999987 44333
No 122
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.84 E-value=1.2e-19 Score=177.43 Aligned_cols=263 Identities=14% Similarity=0.227 Sum_probs=200.8
Q ss_pred ceEEEEECCeeEEEecCCCCC--CCcccc--cCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcce--eeeecC--
Q 005140 183 DQFVIRSGTDTEVLWNDARHL--KPEPVY--KRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNR--LMRYAH-- 253 (712)
Q Consensus 183 ~~~~~~~~~~~~~~w~~~~~~--~~~~~~--~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~--~~~~~~-- 253 (712)
.+.+.+.|.+.+.+|++...+ .++..+ ......++++..+|||+.|++|+.-. +.|||+. .-.. ...+..
T Consensus 431 trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA-apTprikaeltssa 509 (705)
T KOG0639|consen 431 TRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA-APTPRIKAELTSSA 509 (705)
T ss_pred cceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc-CCCcchhhhcCCcc
Confidence 456778889999999984332 233333 22346788999999999999999866 7799987 3322 223333
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCE
Q 005140 254 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 333 (712)
Q Consensus 254 ~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ 333 (712)
+....++.|||.+..+++..| |.|.|||+.+...++.|++|.+... |+..++ ||..
T Consensus 510 paCyALa~spDakvcFsccsd----------GnI~vwDLhnq~~VrqfqGhtDGas-------------cIdis~-dGtk 565 (705)
T KOG0639|consen 510 PACYALAISPDAKVCFSCCSD----------GNIAVWDLHNQTLVRQFQGHTDGAS-------------CIDISK-DGTK 565 (705)
T ss_pred hhhhhhhcCCccceeeeeccC----------CcEEEEEcccceeeecccCCCCCce-------------eEEecC-CCce
Confidence 458889999999999999999 9999999999999999999988764 899999 9999
Q ss_pred EEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecc
Q 005140 334 FAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSD 412 (712)
Q Consensus 334 la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 412 (712)
|-+++ |++|+-||+..+..+....+. ..|.++..+|.+.+|++ +-....+++......+ -.+..++....
T Consensus 566 lWTGGlDntvRcWDlregrqlqqhdF~-SQIfSLg~cP~~dWlav-------GMens~vevlh~skp~-kyqlhlheScV 636 (705)
T KOG0639|consen 566 LWTGGLDNTVRCWDLREGRQLQQHDFS-SQIFSLGYCPTGDWLAV-------GMENSNVEVLHTSKPE-KYQLHLHESCV 636 (705)
T ss_pred eecCCCccceeehhhhhhhhhhhhhhh-hhheecccCCCccceee-------ecccCcEEEEecCCcc-ceeecccccEE
Confidence 99999 999999999988776544333 34889999999999999 3444456665543322 22334456667
Q ss_pred eeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEE
Q 005140 413 CKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISF 492 (712)
Q Consensus 413 ~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i 492 (712)
.++.|.+.|++++....|+....|.+..+..||...+ ...|.+..+|-|.++|+++++|. ...+
T Consensus 637 LSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE-------------~SsVlsCDIS~ddkyIVTGSGdk---kATV 700 (705)
T KOG0639|consen 637 LSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-------------SSSVLSCDISFDDKYIVTGSGDK---KATV 700 (705)
T ss_pred EEEEecccCceeeecCchhhhhhccCccccceeeccc-------------cCcceeeeeccCceEEEecCCCc---ceEE
Confidence 7889999999999988887755555444445554432 67899999999999999999998 6777
Q ss_pred EEe
Q 005140 493 YSM 495 (712)
Q Consensus 493 ~d~ 495 (712)
|.+
T Consensus 701 YeV 703 (705)
T KOG0639|consen 701 YEV 703 (705)
T ss_pred EEE
Confidence 765
No 123
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.84 E-value=2.7e-18 Score=173.36 Aligned_cols=270 Identities=14% Similarity=0.284 Sum_probs=186.5
Q ss_pred cchhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceee
Q 005140 171 NLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLM 249 (712)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~ 249 (712)
.+++..+-|+|. |+++..++... +++. ..+.....+++|..+|+|++||.||+.+|+|+.|. |+||+.. .+-+.
T Consensus 14 ci~d~afkPDGs-qL~lAAg~rll-iyD~-ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k--lEG~L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGT-QLILAAGSRLL-VYDT-SDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK--LEGIL 88 (1081)
T ss_pred chheeEECCCCc-eEEEecCCEEE-EEeC-CCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc--cccee
Confidence 456677778887 55666666554 6776 67888899999999999999999999999999999 7899987 55667
Q ss_pred eecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecC
Q 005140 250 RYAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGG 328 (712)
Q Consensus 250 ~~~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 328 (712)
++.|.+ |.|+.|+|....|++++-. ..-+|..... .+...+...... +++|..
T Consensus 89 kYSH~D~IQCMsFNP~~h~LasCsLs-----------dFglWS~~qK-~V~K~kss~R~~--------------~CsWtn 142 (1081)
T KOG1538|consen 89 KYSHNDAIQCMSFNPITHQLASCSLS-----------DFGLWSPEQK-SVSKHKSSSRII--------------CCSWTN 142 (1081)
T ss_pred eeccCCeeeEeecCchHHHhhhcchh-----------hccccChhhh-hHHhhhhheeEE--------------EeeecC
Confidence 777776 9999999999999999976 3558985332 222222222221 689999
Q ss_pred CCCCEEEEec-CCeEEEEEcCCce--ecccccccccCeeeEEECCCC-----CeEEEEeecCCCCCCCeEEEEEecCCcc
Q 005140 329 GKDKYFAKLG-KNMISVYETESFT--LIDKKSLKVENVMDFSWSPTD-----PIISLFVPELGGGNQPARVSLVQIPSKE 400 (712)
Q Consensus 329 ~dg~~la~~~-d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~~-----~~la~~~~~~~~~~~~~~i~~~~~~~~~ 400 (712)
||+|++.+- +|+|.|-+...-. .+.......++|.+++|+|.. ..+++ .-.+++ +..+.+.. +
T Consensus 143 -DGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV-----~DW~qT--LSFy~LsG-~ 213 (1081)
T KOG1538|consen 143 -DGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAV-----ADWGQT--LSFYQLSG-K 213 (1081)
T ss_pred -CCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEE-----Eeccce--eEEEEecc-e
Confidence 999999998 9999988644211 222233455679999999973 34444 112222 22232221 2
Q ss_pred ceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEE
Q 005140 401 ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAV 480 (712)
Q Consensus 401 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~ 480 (712)
.+..........+++.+-++|.|++++..++. +.+|.-. +... -++......|++++..|++++++.
T Consensus 214 ~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~---------L~~fTR~--GvrL--GTvg~~D~WIWtV~~~PNsQ~v~~ 280 (1081)
T KOG1538|consen 214 QIGKDRALNFDPCCISYFTNGEYILLGGSDKQ---------LSLFTRD--GVRL--GTVGEQDSWIWTVQAKPNSQYVVV 280 (1081)
T ss_pred eecccccCCCCchhheeccCCcEEEEccCCCc---------eEEEeec--CeEE--eeccccceeEEEEEEccCCceEEE
Confidence 22211112344566788899999999988866 5555432 2211 122223678999999999999999
Q ss_pred EEcCCCCCeEEEEEee
Q 005140 481 IHGDSPRPDISFYSMR 496 (712)
Q Consensus 481 ~~~d~~~~~v~i~d~~ 496 (712)
|..|| +|--|++-
T Consensus 281 GCqDG---TiACyNl~ 293 (1081)
T KOG1538|consen 281 GCQDG---TIACYNLI 293 (1081)
T ss_pred EEccC---eeehhhhH
Confidence 99999 77777653
No 124
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.4e-19 Score=162.46 Aligned_cols=291 Identities=16% Similarity=0.238 Sum_probs=205.2
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCCccCCceEEEEEeecccccccCCCCCCCCCCCCCCCCCccchhhccCCCCCceEEE
Q 005140 108 SLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFDDFDKFMKVPDEWAPPEHKPYTPGENLQKWLTDEKARDQFVI 187 (712)
Q Consensus 108 ~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~ 187 (712)
..||+ |+|+--.+-..|+..-..+-|.|+-+|.+--..+-..+. ....|.-.+.|.+..-.+...+|.++
T Consensus 9 f~Gys-vqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~---------e~~s~d~~D~LfdV~Wse~~e~~~~~ 78 (311)
T KOG0277|consen 9 FHGYS-VQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQ---------ECQSYDTEDGLFDVAWSENHENQVIA 78 (311)
T ss_pred cccce-eEecccccchhheeehhhcccccCceEEEEecCCCCCeE---------EEEeeecccceeEeeecCCCcceEEE
Confidence 34554 555544444555555455555554444444333222221 11233344556666777888899999
Q ss_pred EECCeeEEEecCCCCCCCcccccCCCcccceEEEcC-CCcEEEEEecCc-eEEeecccCcceeeeec-CCC-eeEEEecC
Q 005140 188 RSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSP-LGTYLATVHRQG-AAVWGGANTFNRLMRYA-HPQ-VKLIDFSP 263 (712)
Q Consensus 188 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Sp-dg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~~-v~~i~~Sp 263 (712)
..||+...+|+.+....|+..++.|...|.++.|++ ++..+++++-|+ |+||+.. ....+.+|. |.. |....|||
T Consensus 79 a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~-r~~Sv~Tf~gh~~~Iy~a~~sp 157 (311)
T KOG0277|consen 79 ASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPN-RPNSVQTFNGHNSCIYQAAFSP 157 (311)
T ss_pred EecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCC-CCcceEeecCCccEEEEEecCC
Confidence 999999999999888899999999999999999998 456677788888 8899998 777777774 554 99999999
Q ss_pred C-CCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCe
Q 005140 264 G-EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNM 341 (712)
Q Consensus 264 d-g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~ 341 (712)
- ...+++++.| +++++||++.......+..|...+. ++.|+.-+...+++++ |+.
T Consensus 158 ~~~nlfas~Sgd----------~~l~lwdvr~~gk~~~i~ah~~Eil-------------~cdw~ky~~~vl~Tg~vd~~ 214 (311)
T KOG0277|consen 158 HIPNLFASASGD----------GTLRLWDVRSPGKFMSIEAHNSEIL-------------CCDWSKYNHNVLATGGVDNL 214 (311)
T ss_pred CCCCeEEEccCC----------ceEEEEEecCCCceeEEEeccceeE-------------eecccccCCcEEEecCCCce
Confidence 4 6889999999 9999999975443344888875553 6788874556788888 999
Q ss_pred EEEEEcCCce-ecccccccccCeeeEEECCCC-CeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECc
Q 005140 342 ISVYETESFT-LIDKKSLKVENVMDFSWSPTD-PIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS 419 (712)
Q Consensus 342 i~iwd~~~~~-~~~~~~~~~~~v~~~~~sp~~-~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 419 (712)
|++||+...+ .+.....|.-.|..+.|||.. ..|++ ++-|.+.+||.+..+..
T Consensus 215 vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaS-----asYDmT~riw~~~~~ds-------------------- 269 (311)
T KOG0277|consen 215 VRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLAS-----ASYDMTVRIWDPERQDS-------------------- 269 (311)
T ss_pred EEEEehhhccccceeecCCceEEEEEecCcchhhHhhh-----ccccceEEecccccchh--------------------
Confidence 9999998655 333334455568899999974 45566 66777777765432110
Q ss_pred CCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee-CCCEEEEEEcCCCCCeEEEEEe
Q 005140 420 SGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHRFAVIHGDSPRPDISFYSM 495 (712)
Q Consensus 420 ~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~~~~~d~~~~~v~i~d~ 495 (712)
.+ .+..-|..-+..+.||+ ++.++|.++-|. .++||+.
T Consensus 270 ---------------------------------~~--e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe---~l~Vw~p 308 (311)
T KOG0277|consen 270 ---------------------------------AI--ETVDHHTEFVCGLDWSLFDPGQVASTGWDE---LLYVWNP 308 (311)
T ss_pred ---------------------------------hh--hhhhccceEEeccccccccCceeeeccccc---ceeeecc
Confidence 00 01123566777888888 677888888898 8999974
No 125
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=9.8e-19 Score=174.81 Aligned_cols=297 Identities=14% Similarity=0.200 Sum_probs=209.7
Q ss_pred cccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCCC-eeEEEecCCCC--EEEEEcCCC--CCCC
Q 005140 206 EPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQ-VKLIDFSPGEK--YLVTYSSHE--PSNP 279 (712)
Q Consensus 206 ~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~-v~~i~~Spdg~--~l~t~s~d~--~~~~ 279 (712)
...|.+|...|.|++..|.|.+||+|+.+| ++||.+. ++.++.++...+ |.||+|+|.+. .||++-... ..++
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~-TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp 471 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIA-TGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNP 471 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEee-cceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence 346789999999999999999999999999 8899999 999999998766 99999999875 344443331 0000
Q ss_pred --------------------cCCCccEEEEEEccCCc----eeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEE
Q 005140 280 --------------------RDANRVVINIFDVRTGK----VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA 335 (712)
Q Consensus 280 --------------------~~~~~~~I~iwd~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la 335 (712)
.......+..|.-...+ -++....|...+ + .+.|+. .|.||+
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i--------~-----~vtWHr-kGDYla 537 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSI--------R-----QVTWHR-KGDYLA 537 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCcc--------c-----eeeeec-CCceEE
Confidence 01222344455422110 011111222222 1 689999 999999
Q ss_pred Eec----CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeec
Q 005140 336 KLG----KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVS 411 (712)
Q Consensus 336 ~~~----d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 411 (712)
+.. ...|.|+++........+....+.|.++.|+|...+|++.+ .. .|.+|++.....+.....+...
T Consensus 538 tV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT------q~--~vRiYdL~kqelvKkL~tg~kw 609 (733)
T KOG0650|consen 538 TVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT------QR--SVRIYDLSKQELVKKLLTGSKW 609 (733)
T ss_pred EeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe------cc--ceEEEehhHHHHHHHHhcCCee
Confidence 887 46799999986665544444555699999999999888732 22 3666777664433332223333
Q ss_pred ceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEE
Q 005140 412 DCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDIS 491 (712)
Q Consensus 412 ~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~ 491 (712)
...|+.+|.|..|++++.++. +..|+++....|... +.-|...+++++|++.-..||+++.|+ ++.
T Consensus 610 iS~msihp~GDnli~gs~d~k---------~~WfDldlsskPyk~--lr~H~~avr~Va~H~ryPLfas~sdDg---tv~ 675 (733)
T KOG0650|consen 610 ISSMSIHPNGDNLILGSYDKK---------MCWFDLDLSSKPYKT--LRLHEKAVRSVAFHKRYPLFASGSDDG---TVI 675 (733)
T ss_pred eeeeeecCCCCeEEEecCCCe---------eEEEEcccCcchhHH--hhhhhhhhhhhhhccccceeeeecCCC---cEE
Confidence 445677999999999998877 788899887777644 445889999999999999999999999 677
Q ss_pred EEEee---cccccCceeEEEEeCCCc------eeEEEEccCCCeEEEEeccCCCceEEEE
Q 005140 492 FYSMR---TAQHAGRVSKLTTLKGKQ------ANALFWSPSGRFIVLAGLKGFNGQLEFY 542 (712)
Q Consensus 492 i~d~~---~~~~~~~~~~~~~~~~~~------v~~l~~spdg~~l~~~~~~~~dg~v~iw 542 (712)
+|--. ....+.-+.+++.+.+|. |....|+|...+|++++. ||+|++|
T Consensus 676 Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGA---d~tirlf 732 (733)
T KOG0650|consen 676 VFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGA---DGTIRLF 732 (733)
T ss_pred EEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCC---CceEEee
Confidence 66421 111223356778888774 456779999999999998 9999998
No 126
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=2.9e-19 Score=159.51 Aligned_cols=246 Identities=14% Similarity=0.267 Sum_probs=186.0
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC---ceeeeccCCCcccccCCCCCcCCCCcCeEEecC-CC
Q 005140 255 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG---KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGG-GK 330 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~d 330 (712)
-|.++...-.|++|||++.| ++|+|+.++.+ +++.++.+|.+++ |. +.|.. .-
T Consensus 13 ~IHda~lDyygkrlATcsSD----------~tVkIf~v~~n~~s~ll~~L~Gh~GPV------------wq-v~wahPk~ 69 (299)
T KOG1332|consen 13 MIHDAQLDYYGKRLATCSSD----------GTVKIFEVRNNGQSKLLAELTGHSGPV------------WK-VAWAHPKF 69 (299)
T ss_pred hhhHhhhhhhcceeeeecCC----------ccEEEEEEcCCCCceeeeEecCCCCCe------------eE-Eeeccccc
Confidence 37888888889999999999 99999999754 4688999999988 64 77753 36
Q ss_pred CCEEEEec-CCeEEEEEcCCceec--ccccccccCeeeEEECCC--CCeEEEEeecCCCCCCCeEEEEEecCCc-cceee
Q 005140 331 DKYFAKLG-KNMISVYETESFTLI--DKKSLKVENVMDFSWSPT--DPIISLFVPELGGGNQPARVSLVQIPSK-EELRQ 404 (712)
Q Consensus 331 g~~la~~~-d~~i~iwd~~~~~~~--~~~~~~~~~v~~~~~sp~--~~~la~~~~~~~~~~~~~~i~~~~~~~~-~~~~~ 404 (712)
|.+||+++ ||.|.||.-.+++-. .....|...|++++|.|. |-.|++ ++.|+.+.|..++.... ...+.
T Consensus 70 G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~Lac-----asSDG~vsvl~~~~~g~w~t~ki 144 (299)
T KOG1332|consen 70 GTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLAC-----ASSDGKVSVLTYDSSGGWTTSKI 144 (299)
T ss_pred CcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEE-----eeCCCcEEEEEEcCCCCccchhh
Confidence 88999999 999999998877432 233457778999999998 456666 77899998888877622 12222
Q ss_pred eeeeeecceeEEECcC---C-----------CEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEE
Q 005140 405 KNLFSVSDCKMYWQSS---G-----------DYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFA 470 (712)
Q Consensus 405 ~~~~~~~~~~~~~s~~---g-----------~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~ 470 (712)
...+......+.|.|. | +.|+++..|+. +.+|......-. ....|.+|.+.|+.++
T Consensus 145 ~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~---------VkiW~~~~~~w~-~e~~l~~H~dwVRDVA 214 (299)
T KOG1332|consen 145 VFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNL---------VKIWKFDSDSWK-LERTLEGHKDWVRDVA 214 (299)
T ss_pred hhccccccceeeecCcCCCccccccCcccccceeeccCCccc---------eeeeecCCcchh-hhhhhhhcchhhhhhh
Confidence 3345556667788886 5 45777777766 788888764222 2234779999999999
Q ss_pred EeeCC----CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 471 WEPKG----HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 471 ~sp~g----~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
|.|.- .+||+++.|+ +|.||..+......+.+++..+ ...+..++||+.|..|++++. |+.|.+|.-+
T Consensus 215 waP~~gl~~s~iAS~SqDg---~viIwt~~~e~e~wk~tll~~f-~~~~w~vSWS~sGn~LaVs~G---dNkvtlwke~ 286 (299)
T KOG1332|consen 215 WAPSVGLPKSTIASCSQDG---TVIIWTKDEEYEPWKKTLLEEF-PDVVWRVSWSLSGNILAVSGG---DNKVTLWKEN 286 (299)
T ss_pred hccccCCCceeeEEecCCC---cEEEEEecCccCcccccccccC-CcceEEEEEeccccEEEEecC---CcEEEEEEeC
Confidence 99964 5899999999 9999998643333333445554 346899999999999999987 9999999654
No 127
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=3.1e-17 Score=166.86 Aligned_cols=383 Identities=12% Similarity=0.123 Sum_probs=253.4
Q ss_pred chhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCC-cccceEEEcCCCcEEEEEecCc-eEEeecccCcceee
Q 005140 172 LQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSY-WTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLM 249 (712)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~ 249 (712)
+.+..+..+.+ |++++..++.+-+||....--.+..+.++. ..+.+++|++.| .|.+.+.+| |.-||+. +.+++.
T Consensus 28 I~slA~s~kS~-~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~-~lk~~~ 104 (691)
T KOG2048|consen 28 IVSLAYSHKSN-QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSGLSGSITEWDLH-TLKQKY 104 (691)
T ss_pred eEEEEEeccCC-ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEeecCCceEEEEecc-cCceeE
Confidence 33444444333 678888999999999955444555666654 678999999655 566666677 8899999 888888
Q ss_pred eecCCC--eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcee--eeccCCCcccccCCCCCcCCCCcCeEE
Q 005140 250 RYAHPQ--VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVM--RDFKGSADEFAVGGTGGVAGVSWPVFR 325 (712)
Q Consensus 250 ~~~~~~--v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (712)
.+...+ |.+++.+|.+..++.|+.+ |.+..+++..++.. +.|...+..+. ++.
T Consensus 105 ~~d~~gg~IWsiai~p~~~~l~Igcdd----------Gvl~~~s~~p~~I~~~r~l~rq~sRvL-------------sls 161 (691)
T KOG2048|consen 105 NIDSNGGAIWSIAINPENTILAIGCDD----------GVLYDFSIGPDKITYKRSLMRQKSRVL-------------SLS 161 (691)
T ss_pred EecCCCcceeEEEeCCccceEEeecCC----------ceEEEEecCCceEEEEeecccccceEE-------------EEE
Confidence 776443 9999999999999999999 98888887766643 33333333332 799
Q ss_pred ecCCCCCEEEEec-CCeEEEEEcCCceeccccccccc--------CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEec
Q 005140 326 WGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVE--------NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQI 396 (712)
Q Consensus 326 ~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~--------~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~ 396 (712)
|+| ++..|++|+ ||.|++||+.++..+........ -|.++.+-.++. |++ +|..+.|..|+.
T Consensus 162 w~~-~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~s-------gDS~G~V~FWd~ 232 (691)
T KOG2048|consen 162 WNP-TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IAS-------GDSAGTVTFWDS 232 (691)
T ss_pred ecC-CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEE-------ecCCceEEEEcc
Confidence 999 999999998 99999999998876542211111 156666665554 444 788888999998
Q ss_pred CCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCc-ceeEEEecCCCCceEEEEEeeCC
Q 005140 397 PSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDI-PIEVLELDNKNDKIIAFAWEPKG 475 (712)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~l~~h~~~v~~~~~sp~g 475 (712)
.....+.....+.....+++-++++.++.+++.+.. +-.|....... -+.......|...|.+++..++
T Consensus 233 ~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~---------ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~- 302 (691)
T KOG2048|consen 233 IFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPK---------IIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN- 302 (691)
T ss_pred cCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCc---------eEEEEecCCccceeeeccccCCcccceeeeeecc-
Confidence 888888888888889999999999998888877765 22333322211 1111223467888999999877
Q ss_pred CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-CCce-eEEEEccCCCeEEEEeccCCCceEEEEECCcc------
Q 005140 476 HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQA-NALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL------ 547 (712)
Q Consensus 476 ~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v-~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~------ 547 (712)
.+++++.|. .+.+-........ -+..+ ..+. .-+..+|..+.++.-. ...+.+|.+.+.
T Consensus 303 -~l~sgG~d~---~l~i~~s~~~~~~-----~h~~~~~~p~~~~v~~a~~~~L~~~w~----~h~v~lwrlGS~~~~g~~ 369 (691)
T KOG2048|consen 303 -ALISGGRDF---TLAICSSREFKNM-----DHRQKNLFPASDRVSVAPENRLLVLWK----AHGVDLWRLGSVILQGEY 369 (691)
T ss_pred -eEEecceee---EEEEccccccCch-----hhhccccccccceeecCccceEEEEec----cccccceeccCccccccc
Confidence 677777777 6766554321110 00011 0111 1233344443433332 456667766533
Q ss_pred -----eeeeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCc-eeeeec-------ccceeeeEEecCCCCC
Q 005140 548 -----ETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK-LLYRTL-------KDHFFQFLWRPRPPSF 614 (712)
Q Consensus 548 -----~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~-~~~~~~-------~~~i~~~~w~p~~~~l 614 (712)
-.+.+.....|++.+.||+|.+|+.++- ..++||.++-. .+.... .-....+.|+-++..+
T Consensus 370 ~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~------~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~ 443 (691)
T KOG2048|consen 370 NYIHLLKLFTKEKENISCAAISPDGNLIAISTV------SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKL 443 (691)
T ss_pred ChhhheeeecCCccceeeeccCCCCCEEEEeec------cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceE
Confidence 1122355678999999999999999987 57788887632 222111 1245667777777665
Q ss_pred CChh
Q 005140 615 LTPE 618 (712)
Q Consensus 615 ~s~~ 618 (712)
+..+
T Consensus 444 ~~~s 447 (691)
T KOG2048|consen 444 FLVS 447 (691)
T ss_pred EEEe
Confidence 5544
No 128
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.82 E-value=2.1e-18 Score=173.19 Aligned_cols=155 Identities=15% Similarity=0.373 Sum_probs=119.5
Q ss_pred CCceEEEEEee-CCCEEEEEEcCCCCCeEEEEEeecccccCc---eeEEEEeCCCceeEEEEccC-CCeEEEEeccCCCc
Q 005140 463 NDKIIAFAWEP-KGHRFAVIHGDSPRPDISFYSMRTAQHAGR---VSKLTTLKGKQANALFWSPS-GRFIVLAGLKGFNG 537 (712)
Q Consensus 463 ~~~v~~~~~sp-~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~---~~~~~~~~~~~v~~l~~spd-g~~l~~~~~~~~dg 537 (712)
...|++++|.| |...||++..|+ .|++|.+..+..... -..+.+.++..|+++.|+|- ...|+++++ |.
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg---~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asy---d~ 700 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDG---QINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASY---DS 700 (1012)
T ss_pred CceeeecccCCCChHHeeecccCc---eEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhc---cc
Confidence 45689999999 889999999999 999999976543211 12334444557999999994 467888888 99
Q ss_pred eEEEEECCcceeee--eccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCc--eeeeec---ccceeeeEEecC
Q 005140 538 QLEFYNVDELETMA--TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK--LLYRTL---KDHFFQFLWRPR 610 (712)
Q Consensus 538 ~v~iwd~~~~~~~~--~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~--~~~~~~---~~~i~~~~w~p~ 610 (712)
+|++||+.+++... .+|...|.+++|||||+.+|+.+. |+.+++|+-... .++... ..+-..+.|.-+
T Consensus 701 Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcK-----Dg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacd 775 (1012)
T KOG1445|consen 701 TIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCK-----DGTLRVYEPRSREQPVYEGKGPVGTRGARILWACD 775 (1012)
T ss_pred eeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeec-----CceEEEeCCCCCCCccccCCCCccCcceeEEEEec
Confidence 99999999876654 488899999999999999999999 999999996532 233221 145567899999
Q ss_pred CCCCCChhhHHHHHHHHH
Q 005140 611 PPSFLTPEKEEEIAKNLK 628 (712)
Q Consensus 611 ~~~l~s~~~d~~i~~~~~ 628 (712)
|++++..+-|+.-.+.+.
T Consensus 776 gr~viv~Gfdk~SeRQv~ 793 (1012)
T KOG1445|consen 776 GRIVIVVGFDKSSERQVQ 793 (1012)
T ss_pred CcEEEEecccccchhhhh
Confidence 999988777665554443
No 129
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=3.1e-18 Score=179.84 Aligned_cols=269 Identities=17% Similarity=0.264 Sum_probs=192.3
Q ss_pred CCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEE
Q 005140 211 RSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVI 287 (712)
Q Consensus 211 ~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I 287 (712)
.|...-+.++|.|+|.+|.+++.+| |++|+.......-..+. +. .|.+++- ++.+|++++.+ ++|
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~----------~tv 78 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQ----------NTV 78 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeecc----------ceE
Confidence 4556667899999999999999999 88998762212111222 22 2555544 56699999999 999
Q ss_pred EEEEccCCc---eeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCe
Q 005140 288 NIFDVRTGK---VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENV 363 (712)
Q Consensus 288 ~iwd~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v 363 (712)
.+|...++. .+..|..+.. +++++. +|+++|.++ |-.|++-++.+.........|...|
T Consensus 79 ~~y~fps~~~~~iL~Rftlp~r----------------~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apV 141 (933)
T KOG1274|consen 79 LRYKFPSGEEDTILARFTLPIR----------------DLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPV 141 (933)
T ss_pred EEeeCCCCCccceeeeeeccce----------------EEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCce
Confidence 999987775 4555554432 579999 999999999 8899999998887777777888899
Q ss_pred eeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEE
Q 005140 364 MDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFE 443 (712)
Q Consensus 364 ~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 443 (712)
.++.|+|.+++||+ .+.++.++|| ++..+........ . .++..
T Consensus 142 l~l~~~p~~~fLAv-----ss~dG~v~iw--~~~~~~~~~tl~~--v-------~k~n~--------------------- 184 (933)
T KOG1274|consen 142 LQLSYDPKGNFLAV-----SSCDGKVQIW--DLQDGILSKTLTG--V-------DKDNE--------------------- 184 (933)
T ss_pred eeeeEcCCCCEEEE-----EecCceEEEE--Ecccchhhhhccc--C-------Ccccc---------------------
Confidence 99999999999999 5566655554 4433322111110 0 00000
Q ss_pred EEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC----CCceeEEE
Q 005140 444 LFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK----GKQANALF 519 (712)
Q Consensus 444 l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~----~~~v~~l~ 519 (712)
... ...+..++|+|+|..|++...++ .|++|+..+.. ....+. ...++++.
T Consensus 185 -------------~~~---s~i~~~~aW~Pk~g~la~~~~d~---~Vkvy~r~~we------~~f~Lr~~~~ss~~~~~~ 239 (933)
T KOG1274|consen 185 -------------FIL---SRICTRLAWHPKGGTLAVPPVDN---TVKVYSRKGWE------LQFKLRDKLSSSKFSDLQ 239 (933)
T ss_pred -------------ccc---cceeeeeeecCCCCeEEeeccCC---eEEEEccCCce------eheeecccccccceEEEE
Confidence 001 34566789999988888888888 89999986544 333332 22378999
Q ss_pred EccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEc
Q 005140 520 WSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 520 ~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~ 575 (712)
|||+|+|||+++. +|.|.|||.++... ......|.+++|-|++.-|-.-..
T Consensus 240 wsPnG~YiAAs~~---~g~I~vWnv~t~~~--~~~~~~Vc~~aw~p~~n~it~~~~ 290 (933)
T KOG1274|consen 240 WSPNGKYIAASTL---DGQILVWNVDTHER--HEFKRAVCCEAWKPNANAITLITA 290 (933)
T ss_pred EcCCCcEEeeecc---CCcEEEEecccchh--ccccceeEEEecCCCCCeeEEEee
Confidence 9999999999998 99999999997332 233468999999999876544443
No 130
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=4.4e-19 Score=177.22 Aligned_cols=305 Identities=13% Similarity=0.213 Sum_probs=203.3
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC
Q 005140 252 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 331 (712)
Q Consensus 252 ~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg 331 (712)
|...|.+|+..|.|.+|++|+.| |+|+||.+.||.+++++....... +++|+| .+
T Consensus 399 Htg~Vr~iSvdp~G~wlasGsdD----------GtvriWEi~TgRcvr~~~~d~~I~--------------~vaw~P-~~ 453 (733)
T KOG0650|consen 399 HTGLVRSISVDPSGEWLASGSDD----------GTVRIWEIATGRCVRTVQFDSEIR--------------SVAWNP-LS 453 (733)
T ss_pred cCCeEEEEEecCCcceeeecCCC----------CcEEEEEeecceEEEEEeecceeE--------------EEEecC-CC
Confidence 34449999999999999999999 999999999999999988765443 799999 77
Q ss_pred C--EEEEecCCeEEEEEcCCceecccc----cccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeee
Q 005140 332 K--YFAKLGKNMISVYETESFTLIDKK----SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK 405 (712)
Q Consensus 332 ~--~la~~~d~~i~iwd~~~~~~~~~~----~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 405 (712)
. .||.+....+.|-+..-|..+... .+..... .-.|+. .++.|.... .+.. ...+...
T Consensus 454 ~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~---~~~p~~-~~~~W~~~~--~~e~----------~~~v~~~ 517 (733)
T KOG0650|consen 454 DLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPN---ESEPDA-AVVTWSRAS--LDEL----------EKGVCIV 517 (733)
T ss_pred CceeEEEEecCceEEeCccccchhhhcchhhhhhcCCC---ccCCcc-cceeechhh--hhhh----------ccceEEE
Confidence 6 444444555666654433211100 0000000 000111 122221110 0000 0001111
Q ss_pred eeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCC
Q 005140 406 NLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDS 485 (712)
Q Consensus 406 ~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~ 485 (712)
--+.....++.|+..|.||++...++. ...+.|+.+.....+ ..+.-..+.|.++.|+|...+|++++..
T Consensus 518 I~~~k~i~~vtWHrkGDYlatV~~~~~------~~~VliHQLSK~~sQ---~PF~kskG~vq~v~FHPs~p~lfVaTq~- 587 (733)
T KOG0650|consen 518 IKHPKSIRQVTWHRKGDYLATVMPDSG------NKSVLIHQLSKRKSQ---SPFRKSKGLVQRVKFHPSKPYLFVATQR- 587 (733)
T ss_pred EecCCccceeeeecCCceEEEeccCCC------cceEEEEeccccccc---CchhhcCCceeEEEecCCCceEEEEecc-
Confidence 112334456789999999999777644 223677777754333 2232347889999999999999988874
Q ss_pred CCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcc-eeee--eccccceee
Q 005140 486 PRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL-ETMA--TAEHFMATD 560 (712)
Q Consensus 486 ~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~-~~~~--~~~~~~v~~ 560 (712)
.|+|||+..+. +++.+. ...+..++.+|.|..|++++. ++.+..||++-. +... ..|...+++
T Consensus 588 ---~vRiYdL~kqe------lvKkL~tg~kwiS~msihp~GDnli~gs~---d~k~~WfDldlsskPyk~lr~H~~avr~ 655 (733)
T KOG0650|consen 588 ---SVRIYDLSKQE------LVKKLLTGSKWISSMSIHPNGDNLILGSY---DKKMCWFDLDLSSKPYKTLRLHEKAVRS 655 (733)
T ss_pred ---ceEEEehhHHH------HHHHHhcCCeeeeeeeecCCCCeEEEecC---CCeeEEEEcccCcchhHHhhhhhhhhhh
Confidence 59999996533 333333 236899999999999999999 999999999843 2333 256688999
Q ss_pred EEECCCCCEEEEEEccceeccccEEEEEe--cCce-----ee---ee--cc----cceeeeEEecCCCCCCChhhHHHHH
Q 005140 561 VEWDPTGRYVATAVTSVHEMENGFNIWSF--NGKL-----LY---RT--LK----DHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 561 ~~~spdg~~l~t~s~~~~~~d~~v~iw~~--~g~~-----~~---~~--~~----~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
++|++.=..+++|+. |+.+.|+.- -..+ +. .. |. -.|.++.|+|...+|+|++.|++||
T Consensus 656 Va~H~ryPLfas~sd-----Dgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tir 730 (733)
T KOG0650|consen 656 VAFHKRYPLFASGSD-----DGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIR 730 (733)
T ss_pred hhhccccceeeeecC-----CCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEE
Confidence 999999889999999 999998742 1222 21 11 22 3588889999999999999999886
No 131
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.82 E-value=6.4e-18 Score=161.85 Aligned_cols=311 Identities=16% Similarity=0.234 Sum_probs=195.2
Q ss_pred cccceEEEcCCCc-EEEEEecCc-eEEeeccc----Cc--c--ee--eeecCCCeeEEEecCCCCEEEEEcCCCCCCCcC
Q 005140 214 WTESFVQWSPLGT-YLATVHRQG-AAVWGGAN----TF--N--RL--MRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRD 281 (712)
Q Consensus 214 ~~v~~v~~Spdg~-~lat~~~~~-i~iw~~~~----~~--~--~~--~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~ 281 (712)
.++..+.|.+++. .|||++.|. |+||.... ++ . -+ ...|+..|+++.|+|+|..||+|+.+
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~------- 86 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDG------- 86 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCC-------
Confidence 5678888988776 999999998 99996541 11 1 11 12244569999999999999999999
Q ss_pred CCccEEEEEEcc--------C--------CceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEE
Q 005140 282 ANRVVINIFDVR--------T--------GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISV 344 (712)
Q Consensus 282 ~~~~~I~iwd~~--------~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~i 344 (712)
+.|.+|... + ....+.+.+|...+. .++|+| ++.++++++ |+.+.+
T Consensus 87 ---g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diy-------------dL~Ws~-d~~~l~s~s~dns~~l 149 (434)
T KOG1009|consen 87 ---GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIY-------------DLAWSP-DSNFLVSGSVDNSVRL 149 (434)
T ss_pred ---ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchh-------------hhhccC-CCceeeeeeccceEEE
Confidence 999999864 2 112345556665552 589999 999999999 999999
Q ss_pred EEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc----------------ceeeeeee
Q 005140 345 YETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE----------------ELRQKNLF 408 (712)
Q Consensus 345 wd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~----------------~~~~~~~~ 408 (712)
||+..|.++.....|...|+.++|.|-++++++ -+.+...++........- .-....++
T Consensus 150 ~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s-----~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLf 224 (434)
T KOG1009|consen 150 WDVHAGQLLAILDDHEHYVQGVAWDPLNQYVAS-----KSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLF 224 (434)
T ss_pred EEeccceeEeeccccccccceeecchhhhhhhh-----hccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeee
Confidence 999999998888778888999999999999987 445553333322221110 00111112
Q ss_pred eec-----ceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEc
Q 005140 409 SVS-----DCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG 483 (712)
Q Consensus 409 ~~~-----~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~ 483 (712)
... -.++.|+|+|..|++.................+|.-.....|+ ..+++-..++..+.++|
T Consensus 225 hDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~--~~lp~~~k~~lavr~~p---------- 292 (434)
T KOG1009|consen 225 HDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPA--ARLPSPKKPALAVRFSP---------- 292 (434)
T ss_pred ecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCce--eecCCCCcceEEEEeee----------
Confidence 111 1245789999988875543221111001111222221111111 11111111222222221
Q ss_pred CCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeee---eccccceee
Q 005140 484 DSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA---TAEHFMATD 560 (712)
Q Consensus 484 d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~---~~~~~~v~~ 560 (712)
..|.++.-. .. .. +.--|-+-.+++++ ...|+|||.++...+. ..|...+++
T Consensus 293 -------Vy~elrp~~---------~~---~~--~~~lpyrlvfaiAt----~~svyvydtq~~~P~~~v~nihy~~iTD 347 (434)
T KOG1009|consen 293 -------VYYELRPLS---------SE---KF--LFVLPYRLVFAIAT----KNSVYVYDTQTLEPLAVVDNIHYSAITD 347 (434)
T ss_pred -------eEEEecccc---------cc---cc--ccccccceEEEEee----cceEEEeccccccceEEEeeeeeeeecc
Confidence 123332110 00 00 22234445566666 5789999999766554 478899999
Q ss_pred EEECCCCCEEEEEEccceeccccEEEEEecCceee
Q 005140 561 VEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLY 595 (712)
Q Consensus 561 ~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~ 595 (712)
++||+||.+|+.++. ||-..+-.+.+..+.
T Consensus 348 iaws~dg~~l~vSS~-----DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 348 IAWSDDGSVLLVSST-----DGFCSLVTFEPWELG 377 (434)
T ss_pred eeecCCCcEEEEecc-----CCceEEEEEcchhcc
Confidence 999999999999999 999988888766554
No 132
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.81 E-value=1.1e-17 Score=153.48 Aligned_cols=295 Identities=16% Similarity=0.184 Sum_probs=207.2
Q ss_pred cCCCcccceEEEcC-CCcEEEEEecCc-eEEeecccCcc---------eee--eecCC-----CeeEEEecC-CCCEEEE
Q 005140 210 KRSYWTESFVQWSP-LGTYLATVHRQG-AAVWGGANTFN---------RLM--RYAHP-----QVKLIDFSP-GEKYLVT 270 (712)
Q Consensus 210 ~~~~~~v~~v~~Sp-dg~~lat~~~~~-i~iw~~~~~~~---------~~~--~~~~~-----~v~~i~~Sp-dg~~l~t 270 (712)
..|.+.|++++.-| .|+|+++|+.|| +.|||+++... .++ ..+|+ .|.++.|-| |.-.+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 46778999999987 699999999999 77999873221 111 22233 388999999 4456777
Q ss_pred EcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC---CEEEEec-CCeEEEEE
Q 005140 271 YSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD---KYFAKLG-KNMISVYE 346 (712)
Q Consensus 271 ~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg---~~la~~~-d~~i~iwd 346 (712)
++.| .+++|||..|-+..-.|+...... .-+||| -. -++|++. +-.|++-|
T Consensus 120 sSFD----------htlKVWDtnTlQ~a~~F~me~~VY--------------shamSp-~a~sHcLiA~gtr~~~VrLCD 174 (397)
T KOG4283|consen 120 SSFD----------HTLKVWDTNTLQEAVDFKMEGKVY--------------SHAMSP-MAMSHCLIAAGTRDVQVRLCD 174 (397)
T ss_pred cccc----------ceEEEeecccceeeEEeecCceee--------------hhhcCh-hhhcceEEEEecCCCcEEEEe
Confidence 8888 899999999988888887665443 345665 32 3666666 88999999
Q ss_pred cCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEE
Q 005140 347 TESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAV 426 (712)
Q Consensus 347 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~ 426 (712)
+.+|..-..++.|.++|..+.|||...++++. |+.|+.+++|.+.-.+ |.+.
T Consensus 175 i~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLat----gsaDg~irlWDiRras----------------------gcf~-- 226 (397)
T KOG4283|consen 175 IASGSFSHTLSGHRDGVLAVEWSPSSEWVLAT----GSADGAIRLWDIRRAS----------------------GCFR-- 226 (397)
T ss_pred ccCCcceeeeccccCceEEEEeccCceeEEEe----cCCCceEEEEEeeccc----------------------ceeE--
Confidence 99999988889999999999999998877653 7788887777654321 1111
Q ss_pred EEcccccccccccccEEEEEEec-CCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCcee
Q 005140 427 KVDRYTKTKKSTYTGFELFRIKE-RDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVS 505 (712)
Q Consensus 427 ~~~~~~~~~~~~~~~~~l~~l~~-~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~ 505 (712)
+.+... +..|+.. .-++|.+.+..++|+.+|.++++++.|. .+++|+..++... ..
T Consensus 227 -----------------~lD~hn~k~~p~~~-~n~ah~gkvngla~tSd~~~l~~~gtd~---r~r~wn~~~G~nt--l~ 283 (397)
T KOG4283|consen 227 -----------------VLDQHNTKRPPILK-TNTAHYGKVNGLAWTSDARYLASCGTDD---RIRVWNMESGRNT--LR 283 (397)
T ss_pred -----------------EeecccCccCcccc-ccccccceeeeeeecccchhhhhccCcc---ceEEeecccCccc--cc
Confidence 111111 1112111 2457899999999999999999999988 8999999876542 11
Q ss_pred EEEEeC----CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEcccee
Q 005140 506 KLTTLK----GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHE 579 (712)
Q Consensus 506 ~~~~~~----~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~ 579 (712)
....+. .+....+. +-+...++.--. ++.+.++++-.+..+.. .|...+.+..+.|+=+...++..
T Consensus 284 ~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~---~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~---- 355 (397)
T KOG4283|consen 284 EFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPN---DGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDM---- 355 (397)
T ss_pred ccccccccccccceEEEe-ecccceEEEEec---CCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcccc----
Confidence 111111 11111122 333333333333 78899998887777654 66788899999999888888888
Q ss_pred ccccEEEEEe
Q 005140 580 MENGFNIWSF 589 (712)
Q Consensus 580 ~d~~v~iw~~ 589 (712)
|+.+..|..
T Consensus 356 -d~ni~~w~p 364 (397)
T KOG4283|consen 356 -NGNIYMWSP 364 (397)
T ss_pred -CCccccccc
Confidence 899988875
No 133
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=2.3e-18 Score=159.08 Aligned_cols=269 Identities=14% Similarity=0.254 Sum_probs=195.9
Q ss_pred CCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEee------ccc----------
Q 005140 181 ARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWG------GAN---------- 243 (712)
Q Consensus 181 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~------~~~---------- 243 (712)
++..+...+.|.+..+|.+ ..+.+...|++|.++|+|+.|+|.|.+++++++|+ ..||. ...
T Consensus 159 tqpi~gtASADhTA~iWs~-Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsE 237 (481)
T KOG0300|consen 159 TQPICGTASADHTARIWSL-ESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSE 237 (481)
T ss_pred CCcceeecccccceeEEee-ccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCch
Confidence 4444455667889999999 78999999999999999999999999999999999 45885 110
Q ss_pred -------------------Cc----ceeeee-cCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcee
Q 005140 244 -------------------TF----NRLMRY-AHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVM 298 (712)
Q Consensus 244 -------------------~~----~~~~~~-~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~ 298 (712)
.+ .++.++ .|.. |.+..|-..|+.+++++.| .+..+||+++|..+
T Consensus 238 eE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWD----------RTAnlwDVEtge~v 307 (481)
T KOG0300|consen 238 EEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWD----------RTANLWDVETGEVV 307 (481)
T ss_pred hhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecc----------ccceeeeeccCcee
Confidence 00 012222 2444 7888999999999999999 89999999999999
Q ss_pred eeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCC-ceecccccccccCeeeEEECCCCCeEE
Q 005140 299 RDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETES-FTLIDKKSLKVENVMDFSWSPTDPIIS 376 (712)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~sp~~~~la 376 (712)
..+.+|....+ .++-.| ..+++++.+ |.+.++||... -..+..+..|.+.|++..|.-+.+.+.
T Consensus 308 ~~LtGHd~ELt-------------HcstHp-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVS 373 (481)
T KOG0300|consen 308 NILTGHDSELT-------------HCSTHP-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVS 373 (481)
T ss_pred ccccCcchhcc-------------ccccCC-cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceee
Confidence 99999988763 456677 888888888 99999999872 223334456777788877776655443
Q ss_pred EEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeE
Q 005140 377 LFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEV 456 (712)
Q Consensus 377 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 456 (712)
++.|.+++ +|++++...|+..
T Consensus 374 ------gSDDrTvK-----------------------------------------------------vWdLrNMRsplAT 394 (481)
T KOG0300|consen 374 ------GSDDRTVK-----------------------------------------------------VWDLRNMRSPLAT 394 (481)
T ss_pred ------cCCCceEE-----------------------------------------------------EeeeccccCccee
Confidence 45555544 4444444455555
Q ss_pred EEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEE--EeCCC--ceeEEEEccCC--CeEEEE
Q 005140 457 LELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLT--TLKGK--QANALFWSPSG--RFIVLA 530 (712)
Q Consensus 457 ~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~--~~~~~--~v~~l~~spdg--~~l~~~ 530 (712)
+.. ..+++.++.+..+..|+.-..+. .|++||+..... ..+. .-.+| .+.|.+|+.+- .-|+++
T Consensus 395 IRt---dS~~NRvavs~g~~iIAiPhDNR---qvRlfDlnG~Rl----aRlPrtsRqgHrRMV~c~AW~eehp~cnLftc 464 (481)
T KOG0300|consen 395 IRT---DSPANRVAVSKGHPIIAIPHDNR---QVRLFDLNGNRL----ARLPRTSRQGHRRMVTCCAWLEEHPACNLFTC 464 (481)
T ss_pred eec---CCccceeEeecCCceEEeccCCc---eEEEEecCCCcc----ccCCcccccccceeeeeeeccccCcccccccc
Confidence 555 77888888887777777776666 999999964321 1111 11233 58999997543 457778
Q ss_pred eccCCCceEEEEECCc
Q 005140 531 GLKGFNGQLEFYNVDE 546 (712)
Q Consensus 531 ~~~~~dg~v~iwd~~~ 546 (712)
+. |..+.=|++..
T Consensus 465 GF---DR~v~gW~in~ 477 (481)
T KOG0300|consen 465 GF---DRMVAGWKINT 477 (481)
T ss_pred cc---cceeeeeEecc
Confidence 87 99999998763
No 134
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.81 E-value=5.1e-18 Score=165.01 Aligned_cols=275 Identities=14% Similarity=0.200 Sum_probs=201.6
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccC-------CCcccccCCCCCcCCCCcCeE
Q 005140 252 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKG-------SADEFAVGGTGGVAGVSWPVF 324 (712)
Q Consensus 252 ~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 324 (712)
|+-.+.+++++|+++++++++.+ ++|.-|++.+|+..+.+-. |..........++.-+ . ++
T Consensus 141 H~~s~~~vals~d~~~~fsask~----------g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~kei-l-~~ 208 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDKRVFSASKD----------GTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEI-L-TL 208 (479)
T ss_pred ccCcceEEEeeccccceeecCCC----------cceeeeehhcCcccccccccchhhhhccCCCCccccccccee-E-EE
Confidence 44569999999999999999999 9999999999885532211 1111100000111111 1 68
Q ss_pred EecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcccee
Q 005140 325 RWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELR 403 (712)
Q Consensus 325 ~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~ 403 (712)
+.|+ ||+|||+++ |..|.||+..+++.+.....|.+.|.+++|-.....|.+ ++.|..+++|..+-.
T Consensus 209 avS~-Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys-----~s~Drsvkvw~~~~~------ 276 (479)
T KOG0299|consen 209 AVSS-DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYS-----ASADRSVKVWSIDQL------ 276 (479)
T ss_pred EEcC-CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceee-----eecCCceEEEehhHh------
Confidence 9999 999999999 999999999999988877788888999998877666666 667777666544311
Q ss_pred eeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEc
Q 005140 404 QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG 483 (712)
Q Consensus 404 ~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~ 483 (712)
.. .-++.+|.+.|.++.-..-++.+.+++.
T Consensus 277 -----------------------------------------------s~---vetlyGHqd~v~~IdaL~reR~vtVGgr 306 (479)
T KOG0299|consen 277 -----------------------------------------------SY---VETLYGHQDGVLGIDALSRERCVTVGGR 306 (479)
T ss_pred -----------------------------------------------HH---HHHHhCCccceeeechhcccceEEeccc
Confidence 00 0234578888888877777777777778
Q ss_pred CCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee---ccc-----
Q 005140 484 DSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT---AEH----- 555 (712)
Q Consensus 484 d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~---~~~----- 555 (712)
|. ++++|.+.... +++..-....+.|++|-.+. .+++|+. +|.|.+|++...+.+.+ .|+
T Consensus 307 Dr---T~rlwKi~ees-----qlifrg~~~sidcv~~In~~-HfvsGSd---nG~IaLWs~~KKkplf~~~~AHgv~~~~ 374 (479)
T KOG0299|consen 307 DR---TVRLWKIPEES-----QLIFRGGEGSIDCVAFINDE-HFVSGSD---NGSIALWSLLKKKPLFTSRLAHGVIPEL 374 (479)
T ss_pred cc---eeEEEeccccc-----eeeeeCCCCCeeeEEEeccc-ceeeccC---CceEEEeeecccCceeEeeccccccCCc
Confidence 88 99999994332 24555445578888887654 6678887 99999999987776654 121
Q ss_pred ------cceeeEEECCCCCEEEEEEccceeccccEEEEEecCc-----eeeee-cccceeeeEEecCCCCCCCh
Q 005140 556 ------FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK-----LLYRT-LKDHFFQFLWRPRPPSFLTP 617 (712)
Q Consensus 556 ------~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~-----~~~~~-~~~~i~~~~w~p~~~~l~s~ 617 (712)
..|++++..|....+|+|+. +|.+++|.+... +++.. ..+-|+.++|+++|..++.+
T Consensus 375 ~~~~~~~Witsla~i~~sdL~asGS~-----~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 375 DPVNGNFWITSLAVIPGSDLLASGSW-----SGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred cccccccceeeeEecccCceEEecCC-----CCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 26889999999999999999 999999998743 33333 33789999999999977655
No 135
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.80 E-value=1.6e-17 Score=153.18 Aligned_cols=276 Identities=16% Similarity=0.141 Sum_probs=189.5
Q ss_pred ccchhhccCCCCCceEEEEECCeeEEEecCCCCCCCc-ccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcce
Q 005140 170 ENLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPE-PVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNR 247 (712)
Q Consensus 170 ~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~ 247 (712)
+.+....++|.....++.++-|+++.+|.....+..+ .....|..+|.+++||.||+.+++|+.|+ +++||+. +++.
T Consensus 28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~-S~Q~ 106 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA-SGQV 106 (347)
T ss_pred cchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEcc-CCCe
Confidence 5566677778666566788889999999985533322 34567889999999999999999999999 8899999 6665
Q ss_pred eeeecCCC-eeEEEecCCCC--EEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeE
Q 005140 248 LMRYAHPQ-VKLIDFSPGEK--YLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVF 324 (712)
Q Consensus 248 ~~~~~~~~-v~~i~~Spdg~--~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (712)
.....|.+ |..+.|-+... .|+||+.| .+|+.||.+...++.++..+.... ++
T Consensus 107 ~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWD----------KTlKfWD~R~~~pv~t~~LPeRvY--------------a~ 162 (347)
T KOG0647|consen 107 SQVAAHDAPVKTCHWVPGMNYQCLVTGSWD----------KTLKFWDTRSSNPVATLQLPERVY--------------AA 162 (347)
T ss_pred eeeeecccceeEEEEecCCCcceeEecccc----------cceeecccCCCCeeeeeeccceee--------------eh
Confidence 55445554 99999988765 89999999 999999999999988887776543 12
Q ss_pred EecCCCCCEEEEec-CCeEEEEEcCCceecccccc--cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccc
Q 005140 325 RWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSL--KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE 401 (712)
Q Consensus 325 ~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~ 401 (712)
.. --..++.+. ++.|.+|++..+....+... -.-.+.+++..++....++ |+-.+.+.|..++.+..+
T Consensus 163 Dv---~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~al-----GsiEGrv~iq~id~~~~~- 233 (347)
T KOG0647|consen 163 DV---LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFAL-----GSIEGRVAIQYIDDPNPK- 233 (347)
T ss_pred hc---cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEe-----eeecceEEEEecCCCCcc-
Confidence 11 122444444 99999999976543322211 1113788888888776677 555554444433322110
Q ss_pred eeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEE
Q 005140 402 LRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVI 481 (712)
Q Consensus 402 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~ 481 (712)
..+.+...+.. .. ..+.-..|++++|+|.-..|+++
T Consensus 234 --------------------~nFtFkCHR~~----------------~~--------~~~~VYaVNsi~FhP~hgtlvTa 269 (347)
T KOG0647|consen 234 --------------------DNFTFKCHRST----------------NS--------VNDDVYAVNSIAFHPVHGTLVTA 269 (347)
T ss_pred --------------------CceeEEEeccC----------------CC--------CCCceEEecceEeecccceEEEe
Confidence 00111001100 00 00002467889999999999999
Q ss_pred EcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEec
Q 005140 482 HGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGL 532 (712)
Q Consensus 482 ~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~ 532 (712)
++|| ++.+||-+... .+++.+ ..+|++.+|+.+|.+++.+..
T Consensus 270 GsDG---tf~FWDkdar~------kLk~s~~~~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 270 GSDG---TFSFWDKDART------KLKTSETHPQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred cCCc---eEEEecchhhh------hhhccCcCCCccceeEecCCCCEEEEEee
Confidence 9999 99999976543 334433 458999999999999988753
No 136
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=9.2e-18 Score=155.56 Aligned_cols=231 Identities=19% Similarity=0.318 Sum_probs=174.0
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCC--
Q 005140 255 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK-- 332 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~-- 332 (712)
.+++++. +|.|+|+|+.| -+|+|||+.+...+..+..|.+.++ ++.|.+ +-.
T Consensus 45 sitavAV--s~~~~aSGssD----------etI~IYDm~k~~qlg~ll~Hagsit-------------aL~F~~-~~S~s 98 (362)
T KOG0294|consen 45 SITALAV--SGPYVASGSSD----------ETIHIYDMRKRKQLGILLSHAGSIT-------------ALKFYP-PLSKS 98 (362)
T ss_pred ceeEEEe--cceeEeccCCC----------CcEEEEeccchhhhcceeccccceE-------------EEEecC-Ccchh
Confidence 3889988 58999999999 8999999999999999988887764 789988 664
Q ss_pred EEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeec
Q 005140 333 YFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVS 411 (712)
Q Consensus 333 ~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 411 (712)
.|.+++ ||.|.+|+.....++.....|...|+.++.+|.+++-++ .++|+..+.|. +-.++
T Consensus 99 hLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALs-----Vg~D~~lr~WN--LV~Gr----------- 160 (362)
T KOG0294|consen 99 HLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALS-----VGGDQVLRTWN--LVRGR----------- 160 (362)
T ss_pred heeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEE-----EcCCceeeeeh--hhcCc-----------
Confidence 666666 999999999999988888888888999999999987776 55666665443 21111
Q ss_pred ceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEE
Q 005140 412 DCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDIS 491 (712)
Q Consensus 412 ~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~ 491 (712)
. .....+ ....+.+.|+|.|.+|+++..++ |-
T Consensus 161 -----------~------------------------------a~v~~L---~~~at~v~w~~~Gd~F~v~~~~~----i~ 192 (362)
T KOG0294|consen 161 -----------V------------------------------AFVLNL---KNKATLVSWSPQGDHFVVSGRNK----ID 192 (362)
T ss_pred -----------c------------------------------ceeecc---CCcceeeEEcCCCCEEEEEeccE----EE
Confidence 0 000112 22334489999999999988764 88
Q ss_pred EEEeecccccCceeEEEEeCC-CceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeee--eccccceeeEE--ECCC
Q 005140 492 FYSMRTAQHAGRVSKLTTLKG-KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA--TAEHFMATDVE--WDPT 566 (712)
Q Consensus 492 i~d~~~~~~~~~~~~~~~~~~-~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~--~~~~~~v~~~~--~spd 566 (712)
+|.+.+.. .+..+.. ..+.++.|- ++..|++|+. ++.|.+||.+....+. ..|...|-++. -.|+
T Consensus 193 i~q~d~A~------v~~~i~~~~r~l~~~~l-~~~~L~vG~d---~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~ 262 (362)
T KOG0294|consen 193 IYQLDNAS------VFREIENPKRILCATFL-DGSELLVGGD---NEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPE 262 (362)
T ss_pred EEecccHh------Hhhhhhccccceeeeec-CCceEEEecC---CceEEEeccCCCccceeeecchhheeeeEEEecCC
Confidence 99886543 2223322 234455554 5668888887 9999999999766554 37778888876 3678
Q ss_pred CCEEEEEEccceeccccEEEEEecCc
Q 005140 567 GRYVATAVTSVHEMENGFNIWSFNGK 592 (712)
Q Consensus 567 g~~l~t~s~~~~~~d~~v~iw~~~g~ 592 (712)
+.||+++++ ||.|+||++.-.
T Consensus 263 ~~~lvTaSS-----DG~I~vWd~~~~ 283 (362)
T KOG0294|consen 263 HEYLVTASS-----DGFIKVWDIDME 283 (362)
T ss_pred ceEEEEecc-----CceEEEEEcccc
Confidence 899999999 999999998743
No 137
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=3.3e-17 Score=159.80 Aligned_cols=287 Identities=13% Similarity=0.185 Sum_probs=193.8
Q ss_pred eeEEEecCCCCCCCcccccCCC-cc-cceEEEcCCCcEEEEEecCc--eEEeecccCcceee-eecCCC-eeEEEecCCC
Q 005140 192 DTEVLWNDARHLKPEPVYKRSY-WT-ESFVQWSPLGTYLATVHRQG--AAVWGGANTFNRLM-RYAHPQ-VKLIDFSPGE 265 (712)
Q Consensus 192 ~~~~~w~~~~~~~~~~~~~~~~-~~-v~~v~~Spdg~~lat~~~~~--i~iw~~~~~~~~~~-~~~~~~-v~~i~~Spdg 265 (712)
...++|+. ..+.....|++.. .. -.+-+. .+.|++++.... +.+|.+. ...+.. .+-.++ |.+++-+|+|
T Consensus 18 ~~~~~~dl-~TGt~~~~ykg~~~a~~~sl~~l--~~~yllsaq~~rp~l~vw~i~-k~~~~~q~~v~Pg~v~al~s~n~G 93 (476)
T KOG0646|consen 18 INCIVWDL-RTGTSLLQYKGSYLAQAASLTAL--NNEYLLSAQLKRPLLHVWEIL-KKDQVVQYIVLPGPVHALASSNLG 93 (476)
T ss_pred cceeEEec-CCCceeEEecCcccccchhhhhh--chhheeeecccCccccccccC-chhhhhhhcccccceeeeecCCCc
Confidence 34668887 4555444554431 10 011112 236777776554 7799987 444443 333455 9999999999
Q ss_pred CEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEE
Q 005140 266 KYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISV 344 (712)
Q Consensus 266 ~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~i 344 (712)
.||+.|... +.|++|.+.+|.++..+..|-..++ ++.|+. ||.+|++++ ||.|.+
T Consensus 94 ~~l~ag~i~----------g~lYlWelssG~LL~v~~aHYQ~IT-------------cL~fs~-dgs~iiTgskDg~V~v 149 (476)
T KOG0646|consen 94 YFLLAGTIS----------GNLYLWELSSGILLNVLSAHYQSIT-------------CLKFSD-DGSHIITGSKDGAVLV 149 (476)
T ss_pred eEEEeeccc----------CcEEEEEeccccHHHHHHhhcccee-------------EEEEeC-CCcEEEecCCCccEEE
Confidence 999998777 8999999999999999999988875 899999 999999999 999999
Q ss_pred EEcCCce---------ecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeE
Q 005140 345 YETESFT---------LIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKM 415 (712)
Q Consensus 345 wd~~~~~---------~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 415 (712)
|.+.+.- .+.....|.-.|+++...+
T Consensus 150 W~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~--------------------------------------------- 184 (476)
T KOG0646|consen 150 WLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGS--------------------------------------------- 184 (476)
T ss_pred EEEEeecccccCCCccceeeeccCcceeEEEEecC---------------------------------------------
Confidence 9875211 1111111222233332222
Q ss_pred EECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEe
Q 005140 416 YWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSM 495 (712)
Q Consensus 416 ~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~ 495 (712)
.+...+|++.+.|.+ +++|++... .-...+.+ ...+.+++.+|-...+++|+.+| .|.+.++
T Consensus 185 --Gg~~~rl~TaS~D~t---------~k~wdlS~g-~LLlti~f---p~si~av~lDpae~~~yiGt~~G---~I~~~~~ 246 (476)
T KOG0646|consen 185 --GGTNARLYTASEDRT---------IKLWDLSLG-VLLLTITF---PSSIKAVALDPAERVVYIGTEEG---KIFQNLL 246 (476)
T ss_pred --CCccceEEEecCCce---------EEEEEeccc-eeeEEEec---CCcceeEEEcccccEEEecCCcc---eEEeeeh
Confidence 222335556666655 566666543 22223444 77899999999999999999999 7777776
Q ss_pred ecccccC----------ceeEEEEeCCC----ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeecc--cccee
Q 005140 496 RTAQHAG----------RVSKLTTLKGK----QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE--HFMAT 559 (712)
Q Consensus 496 ~~~~~~~----------~~~~~~~~~~~----~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~--~~~v~ 559 (712)
....+.. ....+..+.+| +|+|+++|-||..|++|+. ||.|+|||+.+.+++++.. .++|+
T Consensus 247 ~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~---dg~VcvWdi~S~Q~iRtl~~~kgpVt 323 (476)
T KOG0646|consen 247 FKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDE---DGKVCVWDIYSKQCIRTLQTSKGPVT 323 (476)
T ss_pred hcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCC---CCCEEEEecchHHHHHHHhhhccccc
Confidence 4322110 01123333333 6999999999999999998 9999999999999888743 58899
Q ss_pred eEEECCCCCEEEE
Q 005140 560 DVEWDPTGRYVAT 572 (712)
Q Consensus 560 ~~~~spdg~~l~t 572 (712)
.+.+.|=-+-++.
T Consensus 324 nL~i~~~~~~~~l 336 (476)
T KOG0646|consen 324 NLQINPLERGIIL 336 (476)
T ss_pred eeEeeccccceec
Confidence 9999665443333
No 138
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=7.2e-18 Score=150.71 Aligned_cols=248 Identities=17% Similarity=0.153 Sum_probs=183.0
Q ss_pred ccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcc--eeeee-cCCC-eeEEEecC--CCCEEEEEcCCCCCCCcC
Q 005140 209 YKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN--RLMRY-AHPQ-VKLIDFSP--GEKYLVTYSSHEPSNPRD 281 (712)
Q Consensus 209 ~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~--~~~~~-~~~~-v~~i~~Sp--dg~~l~t~s~d~~~~~~~ 281 (712)
-+.|...|..++..--|+.|||++.|+ |+|+...++.+ .+..+ .|.+ |..++|.. -|.+||+++.|
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYD------- 79 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYD------- 79 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecC-------
Confidence 367888888888888899999999999 88999875543 44444 3555 99999976 79999999999
Q ss_pred CCccEEEEEEccCCc--eeeeccCCCcccccCCCCCcCCCCcCeEEecCC-CCCEEEEec-CCeEEEEEcCCc-eeccc-
Q 005140 282 ANRVVINIFDVRTGK--VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGG-KDKYFAKLG-KNMISVYETESF-TLIDK- 355 (712)
Q Consensus 282 ~~~~~I~iwd~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-dg~~la~~~-d~~i~iwd~~~~-~~~~~- 355 (712)
+.|.||.-.+|+ ....+..|...+. +++|.|+ -|-.|++++ ||.|.|.+..+. .-...
T Consensus 80 ---gkVIiWke~~g~w~k~~e~~~h~~SVN-------------sV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~k 143 (299)
T KOG1332|consen 80 ---GKVIIWKEENGRWTKAYEHAAHSASVN-------------SVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSK 143 (299)
T ss_pred ---ceEEEEecCCCchhhhhhhhhhcccce-------------eecccccccceEEEEeeCCCcEEEEEEcCCCCccchh
Confidence 999999977774 2445556665543 6788773 345777777 999999987743 22211
Q ss_pred -ccccccCeeeEEECCC---C-----------CeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcC
Q 005140 356 -KSLKVENVMDFSWSPT---D-----------PIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSS 420 (712)
Q Consensus 356 -~~~~~~~v~~~~~sp~---~-----------~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 420 (712)
...|.-+|++++|.|. | +.|++ |+.|..++||.++..+-..-+....+..-...++|.|.
T Consensus 144 i~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvS-----gGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~ 218 (299)
T KOG1332|consen 144 IVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVS-----GGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPS 218 (299)
T ss_pred hhhccccccceeeecCcCCCccccccCcccccceeec-----cCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccc
Confidence 2347778999999997 4 45777 88999999999987654333333334444556688886
Q ss_pred C----CEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEee
Q 005140 421 G----DYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMR 496 (712)
Q Consensus 421 g----~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~ 496 (712)
- .+|++++.+++ +.||..+....+-...-+......+..+.||+.|+.|+++++|. .|.+|.-.
T Consensus 219 ~gl~~s~iAS~SqDg~---------viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdN---kvtlwke~ 286 (299)
T KOG1332|consen 219 VGLPKSTIASCSQDGT---------VIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDN---KVTLWKEN 286 (299)
T ss_pred cCCCceeeEEecCCCc---------EEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCc---EEEEEEeC
Confidence 5 47888888877 78888775433332222333477899999999999999999998 99999753
No 139
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.79 E-value=6.1e-18 Score=170.80 Aligned_cols=273 Identities=18% Similarity=0.289 Sum_probs=198.7
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEE
Q 005140 255 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYF 334 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~l 334 (712)
.|..++|-|||..|+.+..+ .+.+||...|..+.++++|++.+. +++||. ||+.+
T Consensus 14 ci~d~afkPDGsqL~lAAg~-----------rlliyD~ndG~llqtLKgHKDtVy-------------cVAys~-dGkrF 68 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-----------RLLVYDTSDGTLLQPLKGHKDTVY-------------CVAYAK-DGKRF 68 (1081)
T ss_pred chheeEECCCCceEEEecCC-----------EEEEEeCCCcccccccccccceEE-------------EEEEcc-CCcee
Confidence 58999999999999888777 689999999999999999999874 799999 99999
Q ss_pred EEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecce
Q 005140 335 AKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDC 413 (712)
Q Consensus 335 a~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 413 (712)
|+++ |+.|.+|+..--..+ +-.|.+.|.|++|+|-..+|++ ++-.. .-+|....+.....+. ....+
T Consensus 69 ASG~aDK~VI~W~~klEG~L--kYSH~D~IQCMsFNP~~h~Las-----CsLsd---FglWS~~qK~V~K~ks--s~R~~ 136 (1081)
T KOG1538|consen 69 ASGSADKSVIIWTSKLEGIL--KYSHNDAIQCMSFNPITHQLAS-----CSLSD---FGLWSPEQKSVSKHKS--SSRII 136 (1081)
T ss_pred ccCCCceeEEEeccccccee--eeccCCeeeEeecCchHHHhhh-----cchhh---ccccChhhhhHHhhhh--heeEE
Confidence 9999 999999986532222 1246778999999999999987 32221 2234433333332222 33455
Q ss_pred eEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEe-cCCCCceEEEEEeeCC-----CEEEEEEcCCCC
Q 005140 414 KMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL-DNKNDKIIAFAWEPKG-----HRFAVIHGDSPR 487 (712)
Q Consensus 414 ~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~~h~~~v~~~~~sp~g-----~~l~~~~~d~~~ 487 (712)
..+|+.||++++.+..+++ +.+-. ..+.+.-.+.- .+.+.+|.+++|+|.. ..+++.....
T Consensus 137 ~CsWtnDGqylalG~~nGT---------IsiRN--k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~q-- 203 (1081)
T KOG1538|consen 137 CCSWTNDGQYLALGMFNGT---------ISIRN--KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQ-- 203 (1081)
T ss_pred EeeecCCCcEEEEeccCce---------EEeec--CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccc--
Confidence 6789999999999999887 22221 11222222222 2457899999999963 4667776666
Q ss_pred CeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee-c-cccceeeEEECC
Q 005140 488 PDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-A-EHFMATDVEWDP 565 (712)
Q Consensus 488 ~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~-~-~~~~v~~~~~sp 565 (712)
++.+|.+..... ..-+.+ +-...|+++-|+|.|+++|+. ++.+.+|.-+ |-.+.+ + ....|..++..|
T Consensus 204 -TLSFy~LsG~~I----gk~r~L-~FdP~CisYf~NGEy~LiGGs---dk~L~~fTR~-GvrLGTvg~~D~WIWtV~~~P 273 (1081)
T KOG1538|consen 204 -TLSFYQLSGKQI----GKDRAL-NFDPCCISYFTNGEYILLGGS---DKQLSLFTRD-GVRLGTVGEQDSWIWTVQAKP 273 (1081)
T ss_pred -eeEEEEecceee----cccccC-CCCchhheeccCCcEEEEccC---CCceEEEeec-CeEEeeccccceeEEEEEEcc
Confidence 889998854221 011122 223478999999999999998 9999999776 334433 2 346789999999
Q ss_pred CCCEEEEEEccceeccccEEEEEecCc
Q 005140 566 TGRYVATAVTSVHEMENGFNIWSFNGK 592 (712)
Q Consensus 566 dg~~l~t~s~~~~~~d~~v~iw~~~g~ 592 (712)
+|++++.|.. ||++.-|++...
T Consensus 274 NsQ~v~~GCq-----DGTiACyNl~fS 295 (1081)
T KOG1538|consen 274 NSQYVVVGCQ-----DGTIACYNLIFS 295 (1081)
T ss_pred CCceEEEEEc-----cCeeehhhhHHh
Confidence 9999999999 999999987543
No 140
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2.1e-16 Score=166.09 Aligned_cols=323 Identities=14% Similarity=0.203 Sum_probs=213.6
Q ss_pred eEEEEECCeeEEEecCCCCCCCccc---ccCCCcccceEEEcCCCcEEEEEecCc-eEEeeccc--C---cceeeeecCC
Q 005140 184 QFVIRSGTDTEVLWNDARHLKPEPV---YKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGAN--T---FNRLMRYAHP 254 (712)
Q Consensus 184 ~~~~~~~~~~~~~w~~~~~~~~~~~---~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~--~---~~~~~~~~~~ 254 (712)
+|.....+....+|+.+...+.... -..|...++|.++||+++++|++..+| |.+|.--+ . ...+...||.
T Consensus 173 e~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~ 252 (792)
T KOG1963|consen 173 EFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHD 252 (792)
T ss_pred eEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccc
Confidence 3444444555667887543322111 145777789999999999999999999 99996442 1 1134445788
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCC-CcccccCCCCCcCCCCcCeEEecCCCCCE
Q 005140 255 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGS-ADEFAVGGTGGVAGVSWPVFRWGGGKDKY 333 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ 333 (712)
.|.+++||++|.||++|+.. +.+.+|.+.+++ +.|-.. ...+. .+.||| |+.+
T Consensus 253 ~V~~L~fS~~G~~LlSGG~E----------~VLv~Wq~~T~~--kqfLPRLgs~I~-------------~i~vS~-ds~~ 306 (792)
T KOG1963|consen 253 EVNSLSFSSDGAYLLSGGRE----------GVLVLWQLETGK--KQFLPRLGSPIL-------------HIVVSP-DSDL 306 (792)
T ss_pred ccceeEEecCCceEeecccc----------eEEEEEeecCCC--cccccccCCeeE-------------EEEEcC-CCCe
Confidence 89999999999999999999 999999999988 344332 22221 689999 9998
Q ss_pred EEEec-CCeEEEEEcCCceecccccc-----------cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccc
Q 005140 334 FAKLG-KNMISVYETESFTLIDKKSL-----------KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE 401 (712)
Q Consensus 334 la~~~-d~~i~iwd~~~~~~~~~~~~-----------~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~ 401 (712)
.+... |+.|.+....++......+. ...-.+.++++|.-+.+++ ...++.|..|++-+.+.
T Consensus 307 ~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vl-------n~~~g~vQ~ydl~td~~ 379 (792)
T KOG1963|consen 307 YSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVL-------NGHPGHVQFYDLYTDST 379 (792)
T ss_pred EEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceee-------cCCCceEEEEeccccce
Confidence 77766 99999998876543322111 1112567889997777777 55666777777766543
Q ss_pred eeeee-----------eeeecceeEEECcCCCEEEEEEccccccccc-ccccEEEEEEecCCcce--eEEEecCCCCceE
Q 005140 402 LRQKN-----------LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKS-TYTGFELFRIKERDIPI--EVLELDNKNDKII 467 (712)
Q Consensus 402 ~~~~~-----------~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~-~~~~~~l~~l~~~~~~~--~~~~l~~h~~~v~ 467 (712)
+.... .........+.+..|.++++.-....+.... ....+++|......... .+.-..+|...+.
T Consensus 380 i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~v 459 (792)
T KOG1963|consen 380 IYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFV 459 (792)
T ss_pred eeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeE
Confidence 32211 1122334445566688888765443211111 12246677665543221 1122236776666
Q ss_pred EEEEee-C-CCEEEEEEcCCCCCeEEEEEeec------ccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceE
Q 005140 468 AFAWEP-K-GHRFAVIHGDSPRPDISFYSMRT------AQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQL 539 (712)
Q Consensus 468 ~~~~sp-~-g~~l~~~~~d~~~~~v~i~d~~~------~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v 539 (712)
..++.+ . ...+++++.++ .++||-+.. ......|..+..++..++++++||.||..|+++. ++.|
T Consensus 460 at~~~~~~rs~~~vta~~dg---~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~----~~~I 532 (792)
T KOG1963|consen 460 ATIFLNPTRSVRCVTASVDG---DFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSF----DDTI 532 (792)
T ss_pred EEEEecCcccceeEEeccCC---eEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEec----CCEE
Confidence 665554 2 33788888888 899999833 3333456677777777899999999997777765 8999
Q ss_pred EEEECCc
Q 005140 540 EFYNVDE 546 (712)
Q Consensus 540 ~iwd~~~ 546 (712)
.+||..+
T Consensus 533 tiwd~~~ 539 (792)
T KOG1963|consen 533 TIWDYDT 539 (792)
T ss_pred EEecCCC
Confidence 9999987
No 141
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.79 E-value=5.5e-18 Score=164.93 Aligned_cols=252 Identities=15% Similarity=0.305 Sum_probs=167.8
Q ss_pred eeeeecCCC-eeEEEecCCCCEE-EEEcCCCCCCCcCCCccEEEEEEccCCce----------eeeccCCCcccccCCCC
Q 005140 247 RLMRYAHPQ-VKLIDFSPGEKYL-VTYSSHEPSNPRDANRVVINIFDVRTGKV----------MRDFKGSADEFAVGGTG 314 (712)
Q Consensus 247 ~~~~~~~~~-v~~i~~Spdg~~l-~t~s~d~~~~~~~~~~~~I~iwd~~~g~~----------~~~~~~~~~~~~~~~~~ 314 (712)
...++.|++ |..+..-|....| |+.+.. +.|.|||..+-.. -.++.+|...-
T Consensus 117 i~~~i~h~gEVnRaRymPQnp~iVAt~t~~----------~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg------ 180 (422)
T KOG0264|consen 117 ISQKINHDGEVNRARYMPQNPNIVATKTSS----------GDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEG------ 180 (422)
T ss_pred EEEeccCCccchhhhhCCCCCcEEEecCCC----------CCEEEEEeccCCCcccccccCCCceEEEeecccc------
Confidence 344555665 9999999977555 455555 7899999743321 12455665521
Q ss_pred CcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceec-------ccccccccCeeeEEECCCCCeEEEEeecCCCCC
Q 005140 315 GVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLI-------DKKSLKVENVMDFSWSPTDPIISLFVPELGGGN 386 (712)
Q Consensus 315 ~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~-------~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~ 386 (712)
. .++|++...-++++++ |++|++||+...... .....|...|.+++|+|-...+... ++.+
T Consensus 181 --~-----glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~s----v~dd 249 (422)
T KOG0264|consen 181 --Y-----GLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGS----VGDD 249 (422)
T ss_pred --c-----ccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhhee----ecCC
Confidence 2 3677773334666666 999999999854331 1123345557777777764443321 2233
Q ss_pred CCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCce
Q 005140 387 QPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKI 466 (712)
Q Consensus 387 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v 466 (712)
+. +.||+++.. .........+|.+.|
T Consensus 250 ~~-----------------------------------------------------L~iwD~R~~-~~~~~~~~~ah~~~v 275 (422)
T KOG0264|consen 250 GK-----------------------------------------------------LMIWDTRSN-TSKPSHSVKAHSAEV 275 (422)
T ss_pred Ce-----------------------------------------------------EEEEEcCCC-CCCCcccccccCCce
Confidence 32 344444431 111123345889999
Q ss_pred EEEEEee-CCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCC-eEEEEeccCCCceEEEE
Q 005140 467 IAFAWEP-KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGR-FIVLAGLKGFNGQLEFY 542 (712)
Q Consensus 467 ~~~~~sp-~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~-~l~~~~~~~~dg~v~iw 542 (712)
+|++|+| ++..||+++.|+ +|.+||+++... ++.++.+| .|.++.|||+.. .|++++. |+.+.+|
T Consensus 276 n~~~fnp~~~~ilAT~S~D~---tV~LwDlRnL~~-----~lh~~e~H~dev~~V~WSPh~etvLASSg~---D~rl~vW 344 (422)
T KOG0264|consen 276 NCVAFNPFNEFILATGSADK---TVALWDLRNLNK-----PLHTFEGHEDEVFQVEWSPHNETVLASSGT---DRRLNVW 344 (422)
T ss_pred eEEEeCCCCCceEEeccCCC---cEEEeechhccc-----CceeccCCCcceEEEEeCCCCCceeEeccc---CCcEEEE
Confidence 9999999 566778888899 999999987654 67777766 689999999765 5556665 9999999
Q ss_pred ECCcc--------------ee--eeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCcee
Q 005140 543 NVDEL--------------ET--MATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLL 594 (712)
Q Consensus 543 d~~~~--------------~~--~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~ 594 (712)
|+... ++ +..+|...|+++.|+|+-.+++++... ||.+.||.....+.
T Consensus 345 Dls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Svae----DN~LqIW~~s~~i~ 408 (422)
T KOG0264|consen 345 DLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAE----DNILQIWQMAENIY 408 (422)
T ss_pred eccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecC----CceEEEeecccccc
Confidence 99731 11 223777899999999998876655543 99999999875443
No 142
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.79 E-value=3e-17 Score=152.56 Aligned_cols=265 Identities=16% Similarity=0.260 Sum_probs=182.2
Q ss_pred EEEcCCCcEEEEEecCc-eEEeecccC-------------cceeeeecCCC-eeEEEec-------CCCCEEEEEcCCCC
Q 005140 219 VQWSPLGTYLATVHRQG-AAVWGGANT-------------FNRLMRYAHPQ-VKLIDFS-------PGEKYLVTYSSHEP 276 (712)
Q Consensus 219 v~~Spdg~~lat~~~~~-i~iw~~~~~-------------~~~~~~~~~~~-v~~i~~S-------pdg~~l~t~s~d~~ 276 (712)
+.|||||+.|.+-+.+. +.+|++... .....++..+. |...+|- |+..++|+.+.+
T Consensus 55 ckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~-- 132 (406)
T KOG2919|consen 55 CKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD-- 132 (406)
T ss_pred ceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc--
Confidence 78999999999988877 779987511 01122222333 6777774 777889998888
Q ss_pred CCCcCCCccEEEEEEccCCceeeeccCCC--cccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcC-Cceec
Q 005140 277 SNPRDANRVVINIFDVRTGKVMRDFKGSA--DEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETE-SFTLI 353 (712)
Q Consensus 277 ~~~~~~~~~~I~iwd~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~-~~~~~ 353 (712)
.-|.+||.-+|+...++.+-. ..+ .+. . +++||| ||.+|..+-+..|+++|+. .|...
T Consensus 133 --------~PIh~wdaftG~lraSy~~ydh~de~--------taA-h-sL~Fs~-DGeqlfaGykrcirvFdt~RpGr~c 193 (406)
T KOG2919|consen 133 --------QPIHLWDAFTGKLRASYRAYDHQDEY--------TAA-H-SLQFSP-DGEQLFAGYKRCIRVFDTSRPGRDC 193 (406)
T ss_pred --------CceeeeeccccccccchhhhhhHHhh--------hhh-e-eEEecC-CCCeEeecccceEEEeeccCCCCCC
Confidence 679999999999877776532 222 111 1 699999 9999999999999999984 44322
Q ss_pred ccc-------cccccCeeeEEECCCCC-eEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEE
Q 005140 354 DKK-------SLKVENVMDFSWSPTDP-IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLA 425 (712)
Q Consensus 354 ~~~-------~~~~~~v~~~~~sp~~~-~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~ 425 (712)
... ....+-+.+++|+|... .+++ ++-.+..-|+.++ +
T Consensus 194 ~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~-----gsY~q~~giy~~~-------------------------~---- 239 (406)
T KOG2919|consen 194 PVYTTVTKGKFGQKGIISCFAFSPMDSKTLAV-----GSYGQRVGIYNDD-------------------------G---- 239 (406)
T ss_pred cchhhhhcccccccceeeeeeccCCCCcceee-----ecccceeeeEecC-------------------------C----
Confidence 111 11233478889999765 5555 4433333322111 0
Q ss_pred EEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCcee
Q 005140 426 VKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVS 505 (712)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~ 505 (712)
..|. ..+.+|.+.|+.+.|.++|+.|.+++.... .|..||++....
T Consensus 240 -------------------------~~pl--~llggh~gGvThL~~~edGn~lfsGaRk~d--kIl~WDiR~~~~----- 285 (406)
T KOG2919|consen 240 -------------------------RRPL--QLLGGHGGGVTHLQWCEDGNKLFSGARKDD--KILCWDIRYSRD----- 285 (406)
T ss_pred -------------------------CCce--eeecccCCCeeeEEeccCcCeecccccCCC--eEEEEeehhccc-----
Confidence 0111 224488999999999999999999987432 799999975432
Q ss_pred EEEEeCCC-----ceeEEEEccCCCeEEEEeccCCCceEEEEECCc-ceeee--eccccceeeEEECCCCCEEEEEEc
Q 005140 506 KLTTLKGK-----QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE-LETMA--TAEHFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 506 ~~~~~~~~-----~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~-~~~~~--~~~~~~v~~~~~spdg~~l~t~s~ 575 (712)
++..+..+ +.--+...|+|++|++|+. +|.|.+||+++ +..+. ..+...++.++++|-=..+|+++.
T Consensus 286 pv~~L~rhv~~TNQRI~FDld~~~~~LasG~t---dG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 286 PVYALERHVGDTNQRILFDLDPKGEILASGDT---DGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred hhhhhhhhccCccceEEEecCCCCceeeccCC---CccEEEEecCCCCCcccccccccccccceecCcccceeeeccC
Confidence 44444333 2334667899999999987 99999999996 44232 255678899999999777777776
No 143
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=5e-18 Score=174.90 Aligned_cols=269 Identities=12% Similarity=0.189 Sum_probs=189.5
Q ss_pred cceEEEcCCCcEEEEEecCceEEeeccc-Ccc--eeeeec-----CCCeeEEEecC-CCCEEEEEcCCCCCCCcCCCccE
Q 005140 216 ESFVQWSPLGTYLATVHRQGAAVWGGAN-TFN--RLMRYA-----HPQVKLIDFSP-GEKYLVTYSSHEPSNPRDANRVV 286 (712)
Q Consensus 216 v~~v~~Spdg~~lat~~~~~i~iw~~~~-~~~--~~~~~~-----~~~v~~i~~Sp-dg~~l~t~s~d~~~~~~~~~~~~ 286 (712)
.+.|+..++-..|+.++..-+.|+.+.. .+. ...++. +-.+..+.|+. +.++|||++.. |.
T Consensus 42 ~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~n----------G~ 111 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTN----------GV 111 (839)
T ss_pred cceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCC----------Cc
Confidence 3456777888888888887777776551 111 112221 11266788875 46899999999 99
Q ss_pred EEEEEccC---CceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccC
Q 005140 287 INIFDVRT---GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVEN 362 (712)
Q Consensus 287 I~iwd~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~ 362 (712)
|.+||+.. .+.+..|..|...+. .+.|++-...+|++++ ||+|++||+...+-........+.
T Consensus 112 i~vWdlnk~~rnk~l~~f~EH~Rs~~-------------~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSES 178 (839)
T KOG0269|consen 112 ISVWDLNKSIRNKLLTVFNEHERSAN-------------KLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSES 178 (839)
T ss_pred EEEEecCccccchhhhHhhhhcccee-------------eeeeccCCccEEEecCCCceEEEEeeecccccccccccchh
Confidence 99999966 566778888887763 6888872335777888 999999999876655444455667
Q ss_pred eeeEEECCCC-CeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccccccc
Q 005140 363 VMDFSWSPTD-PIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTG 441 (712)
Q Consensus 363 v~~~~~sp~~-~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~ 441 (712)
|.++.|+|.. .++++ +.+.+.
T Consensus 179 iRDV~fsp~~~~~F~s-------------------------------------------------~~dsG~--------- 200 (839)
T KOG0269|consen 179 IRDVKFSPGYGNKFAS-------------------------------------------------IHDSGY--------- 200 (839)
T ss_pred hhceeeccCCCceEEE-------------------------------------------------ecCCce---------
Confidence 8888888853 33333 222222
Q ss_pred EEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEE
Q 005140 442 FELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFW 520 (712)
Q Consensus 442 ~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~ 520 (712)
+++|+++...... ..+.+|.++|.++.|+|++.+||+|+.|+ .|+||++.+... .++.++. ..++..+.|
T Consensus 201 lqlWDlRqp~r~~--~k~~AH~GpV~c~nwhPnr~~lATGGRDK---~vkiWd~t~~~~----~~~~tInTiapv~rVkW 271 (839)
T KOG0269|consen 201 LQLWDLRQPDRCE--KKLTAHNGPVLCLNWHPNREWLATGGRDK---MVKIWDMTDSRA----KPKHTINTIAPVGRVKW 271 (839)
T ss_pred EEEeeccCchhHH--HHhhcccCceEEEeecCCCceeeecCCCc---cEEEEeccCCCc----cceeEEeecceeeeeee
Confidence 5667766544332 45678999999999999999999999999 999999965432 2555555 448999999
Q ss_pred ccCCCe-EEEEeccCCCceEEEEECCccee---eeeccccceeeEEECC-CCCEEEEEEc
Q 005140 521 SPSGRF-IVLAGLKGFNGQLEFYNVDELET---MATAEHFMATDVEWDP-TGRYVATAVT 575 (712)
Q Consensus 521 spdg~~-l~~~~~~~~dg~v~iwd~~~~~~---~~~~~~~~v~~~~~sp-dg~~l~t~s~ 575 (712)
-|.-++ |++++... |-.|+|||+...-+ ...-|...++.++|.. |-..+.+++.
T Consensus 272 RP~~~~hLAtcsmv~-dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sK 330 (839)
T KOG0269|consen 272 RPARSYHLATCSMVV-DTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSK 330 (839)
T ss_pred ccCccchhhhhhccc-cceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecC
Confidence 998765 55655555 88999999984322 2235678888999987 3345667766
No 144
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=3.9e-18 Score=172.34 Aligned_cols=242 Identities=14% Similarity=0.228 Sum_probs=179.6
Q ss_pred EEEec-CCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc------eeeeccCCCcccccCCCCCcCCCCcCeEEecCCC
Q 005140 258 LIDFS-PGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK------VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK 330 (712)
Q Consensus 258 ~i~~S-pdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d 330 (712)
.+..+ |.++||+||+.| |.|++|++.... .+.++..|.+-+. .+.... +
T Consensus 29 ~Lq~da~~~ryLfTgGRD----------g~i~~W~~~~d~~~~s~~~~asme~HsDWVN-------------DiiL~~-~ 84 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRD----------GIIRLWSVTQDSNEPSTPYIASMEHHSDWVN-------------DIILCG-N 84 (735)
T ss_pred hccccCCCCceEEecCCC----------ceEEEeccccccCCcccchhhhhhhhHhHHh-------------hHHhhc-C
Confidence 34444 467889999999 999999975332 2556666655432 344556 7
Q ss_pred CCEEEEec-CCeEEEEEcCCce--ecccccccccCeeeEEE-CCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeee
Q 005140 331 DKYFAKLG-KNMISVYETESFT--LIDKKSLKVENVMDFSW-SPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKN 406 (712)
Q Consensus 331 g~~la~~~-d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~-sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 406 (712)
++.|++++ |-+|++|+...+. .......|.+.|.+++. .++...+|+ ||-|..+.+|.++....+.+...+
T Consensus 85 ~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaS-----gGLD~~IflWDin~~~~~l~~s~n 159 (735)
T KOG0308|consen 85 GKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVAS-----GGLDRKIFLWDINTGTATLVASFN 159 (735)
T ss_pred CCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEe-----cCCCccEEEEEccCcchhhhhhcc
Confidence 88888888 9999999998664 33344567788999999 777777777 667776666655432211111100
Q ss_pred eeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEec-CCCCceEEEEEeeCCCEEEEEEcCC
Q 005140 407 LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELD-NKNDKIIAFAWEPKGHRFAVIHGDS 485 (712)
Q Consensus 407 ~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~h~~~v~~~~~sp~g~~l~~~~~d~ 485 (712)
. .+ ...+. ++..+|.+++-++.|..|+.|+..+
T Consensus 160 ~--------------------------------------------~t--~~sl~sG~k~siYSLA~N~t~t~ivsGgtek 193 (735)
T KOG0308|consen 160 N--------------------------------------------VT--VNSLGSGPKDSIYSLAMNQTGTIIVSGGTEK 193 (735)
T ss_pred c--------------------------------------------cc--cccCCCCCccceeeeecCCcceEEEecCccc
Confidence 0 00 01111 6688999999999998888888888
Q ss_pred CCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeE
Q 005140 486 PRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDV 561 (712)
Q Consensus 486 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~ 561 (712)
.|++||.++.. .+..+.+| .|..+..++||+.+++++. ||+|++||+...+++.+ .|...+.++
T Consensus 194 ---~lr~wDprt~~------kimkLrGHTdNVr~ll~~dDGt~~ls~sS---DgtIrlWdLgqQrCl~T~~vH~e~VWaL 261 (735)
T KOG0308|consen 194 ---DLRLWDPRTCK------KIMKLRGHTDNVRVLLVNDDGTRLLSASS---DGTIRLWDLGQQRCLATYIVHKEGVWAL 261 (735)
T ss_pred ---ceEEecccccc------ceeeeeccccceEEEEEcCCCCeEeecCC---CceEEeeeccccceeeeEEeccCceEEE
Confidence 89999998765 56666666 6899999999999999998 99999999998888876 566789999
Q ss_pred EECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 562 EWDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 562 ~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
..+|+=.++.+|+. |+.|..=++..
T Consensus 262 ~~~~sf~~vYsG~r-----d~~i~~Tdl~n 286 (735)
T KOG0308|consen 262 QSSPSFTHVYSGGR-----DGNIYRTDLRN 286 (735)
T ss_pred eeCCCcceEEecCC-----CCcEEecccCC
Confidence 99999999999999 88888777654
No 145
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.78 E-value=7.5e-17 Score=164.39 Aligned_cols=274 Identities=13% Similarity=0.174 Sum_probs=204.8
Q ss_pred CCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCccee--eeec-CCC-eeE-EEecC-CCCEEEEEcCCCC
Q 005140 204 KPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRL--MRYA-HPQ-VKL-IDFSP-GEKYLVTYSSHEP 276 (712)
Q Consensus 204 ~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~--~~~~-~~~-v~~-i~~Sp-dg~~l~t~s~d~~ 276 (712)
+....+.+|...|..++..+.+ .++++++++ +++|.-. ..+.+ ..+. +.+ |.+ +++-+ ++-.|++|+.|
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~-~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D-- 80 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKK-GKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMD-- 80 (745)
T ss_pred eeEEEeccCccchheeEecCCe-EEeecCCCCceeeeecc-CcccccceecccCcceeeccceeccccCcceEeeccc--
Confidence 3455678999999888876554 889999998 8899976 33322 2332 334 444 77775 44469999999
Q ss_pred CCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccc
Q 005140 277 SNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDK 355 (712)
Q Consensus 277 ~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~ 355 (712)
.+|.+|.+.+..++..+.+|...++ ++.-.. ++. +++++ |.++++|..... ...
T Consensus 81 --------~~i~v~~~~~~~P~~~LkgH~snVC-------------~ls~~~-~~~-~iSgSWD~TakvW~~~~l--~~~ 135 (745)
T KOG0301|consen 81 --------TTIIVFKLSQAEPLYTLKGHKSNVC-------------SLSIGE-DGT-LISGSWDSTAKVWRIGEL--VYS 135 (745)
T ss_pred --------ceEEEEecCCCCchhhhhcccccee-------------eeecCC-cCc-eEecccccceEEecchhh--hcc
Confidence 8999999999999999999998872 343333 444 78888 999999986633 333
Q ss_pred ccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccc
Q 005140 356 KSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTK 435 (712)
Q Consensus 356 ~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~ 435 (712)
...|...|..+..-|.+ .+++ |++|..+++|.= |+.
T Consensus 136 l~gH~asVWAv~~l~e~-~~vT-----gsaDKtIklWk~--------------------------~~~------------ 171 (745)
T KOG0301|consen 136 LQGHTASVWAVASLPEN-TYVT-----GSADKTIKLWKG--------------------------GTL------------ 171 (745)
T ss_pred cCCcchheeeeeecCCC-cEEe-----ccCcceeeeccC--------------------------Cch------------
Confidence 55788889999888888 4455 778887776521 110
Q ss_pred ccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--
Q 005140 436 KSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK-- 513 (712)
Q Consensus 436 ~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-- 513 (712)
..++.+|.+.|+.+++-|++ .|+++++|| .|++|++. +. .+..+.+|
T Consensus 172 --------------------l~tf~gHtD~VRgL~vl~~~-~flScsNDg---~Ir~w~~~-ge------~l~~~~ghtn 220 (745)
T KOG0301|consen 172 --------------------LKTFSGHTDCVRGLAVLDDS-HFLSCSNDG---SIRLWDLD-GE------VLLEMHGHTN 220 (745)
T ss_pred --------------------hhhhccchhheeeeEEecCC-CeEeecCCc---eEEEEecc-Cc------eeeeeeccce
Confidence 13456899999999998765 477889999 99999993 22 56666666
Q ss_pred ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 514 QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 514 ~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
-+.++...+++..+++++. |++++||+.....+..+...-.+.++.+-++|. |++|++ ||.|+||...
T Consensus 221 ~vYsis~~~~~~~Ivs~gE---DrtlriW~~~e~~q~I~lPttsiWsa~~L~NgD-Ivvg~S-----DG~VrVfT~~ 288 (745)
T KOG0301|consen 221 FVYSISMALSDGLIVSTGE---DRTLRIWKKDECVQVITLPTTSIWSAKVLLNGD-IVVGGS-----DGRVRVFTVD 288 (745)
T ss_pred EEEEEEecCCCCeEEEecC---CceEEEeecCceEEEEecCccceEEEEEeeCCC-EEEecc-----CceEEEEEec
Confidence 4788888888889999998 999999999855444455556888898888887 566777 8999999876
No 146
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.78 E-value=6.5e-17 Score=171.74 Aligned_cols=263 Identities=14% Similarity=0.165 Sum_probs=201.1
Q ss_pred ceEEEEECCeeEEEecCCCCCCCccc-ccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-CCC-eeE
Q 005140 183 DQFVIRSGTDTEVLWNDARHLKPEPV-YKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HPQ-VKL 258 (712)
Q Consensus 183 ~~~~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~~-v~~ 258 (712)
+.++.+..+.++.+|+. ..+..+.. +.+|...|.++++..-+.+|++|+.|. ++|||.. ++.++..+. |.. |.+
T Consensus 219 ~~~~~~s~~~tl~~~~~-~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~-sg~C~~~l~gh~stv~~ 296 (537)
T KOG0274|consen 219 GFFKSGSDDSTLHLWDL-NNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCS-TGECTHSLQGHTSSVRC 296 (537)
T ss_pred CeEEecCCCceeEEeec-ccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecC-CCcEEEEecCCCceEEE
Confidence 34556667778889999 45555555 999999999999998888999999998 8899988 999988885 655 777
Q ss_pred EEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec
Q 005140 259 IDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG 338 (712)
Q Consensus 259 i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~ 338 (712)
+.. .+.++++|+.| .+|++|++.++..++.+.+|...+. ++. - ++.++++++
T Consensus 297 ~~~--~~~~~~sgs~D----------~tVkVW~v~n~~~l~l~~~h~~~V~-------------~v~--~-~~~~lvsgs 348 (537)
T KOG0274|consen 297 LTI--DPFLLVSGSRD----------NTVKVWDVTNGACLNLLRGHTGPVN-------------CVQ--L-DEPLLVSGS 348 (537)
T ss_pred EEc--cCceEeeccCC----------ceEEEEeccCcceEEEeccccccEE-------------EEE--e-cCCEEEEEe
Confidence 766 45678888999 8999999999999999999887763 344 4 678999998
Q ss_pred -CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEE
Q 005140 339 -KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYW 417 (712)
Q Consensus 339 -d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (712)
|++|.+|++.+++.+.....|...|.++.+.+. ..++. |+.|..+++|.+.... +
T Consensus 349 ~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~S-----gs~D~~IkvWdl~~~~-~----------------- 404 (537)
T KOG0274|consen 349 YDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLS-----GSLDTTIKVWDLRTKR-K----------------- 404 (537)
T ss_pred cCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEe-----eeeccceEeecCCchh-h-----------------
Confidence 999999999999999998899999999987765 56665 6666555554433211 0
Q ss_pred CcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeec
Q 005140 418 QSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRT 497 (712)
Q Consensus 418 s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~ 497 (712)
....+.+|..-+..+.+ .+++|++++.|+ +|++||..+
T Consensus 405 -------------------------------------c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~---~Ik~WD~~~ 442 (537)
T KOG0274|consen 405 -------------------------------------CIHTLQGHTSLVSSLLL--RDNFLVSSSADG---TIKLWDAEE 442 (537)
T ss_pred -------------------------------------hhhhhcCCccccccccc--ccceeEeccccc---cEEEeeccc
Confidence 11234455666644443 678999999999 999999977
Q ss_pred ccccCceeEEEEeCC---CceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee
Q 005140 498 AQHAGRVSKLTTLKG---KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT 552 (712)
Q Consensus 498 ~~~~~~~~~~~~~~~---~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~ 552 (712)
+. .+..+.+ ..+..+++. -..+++++. +|.+++||+++++....
T Consensus 443 ~~------~~~~~~~~~~~~v~~l~~~--~~~il~s~~---~~~~~l~dl~~~~~~~~ 489 (537)
T KOG0274|consen 443 GE------CLRTLEGRHVGGVSALALG--KEEILCSSD---DGSVKLWDLRSGTLIRT 489 (537)
T ss_pred Cc------eeeeeccCCcccEEEeecC--cceEEEEec---CCeeEEEecccCchhhh
Confidence 65 5555554 245666655 356666666 99999999998877664
No 147
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=1.3e-17 Score=171.88 Aligned_cols=233 Identities=16% Similarity=0.321 Sum_probs=174.5
Q ss_pred cccceEEEcC-CCcEEEEEecCc-eEEeecccC---cceeeee-cCCC-eeEEEecCCC-CEEEEEcCCCCCCCcCCCcc
Q 005140 214 WTESFVQWSP-LGTYLATVHRQG-AAVWGGANT---FNRLMRY-AHPQ-VKLIDFSPGE-KYLVTYSSHEPSNPRDANRV 285 (712)
Q Consensus 214 ~~v~~v~~Sp-dg~~lat~~~~~-i~iw~~~~~---~~~~~~~-~~~~-v~~i~~Spdg-~~l~t~s~d~~~~~~~~~~~ 285 (712)
.++..|.|+. +.++|||++.+| |.+||+. . .+.+..| .|.. +.+++|++.. .+|++|+.| |
T Consensus 88 ~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln-k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQD----------g 156 (839)
T KOG0269|consen 88 YSAADVKWGQLYSNLIATCSTNGVISVWDLN-KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQD----------G 156 (839)
T ss_pred eehhhcccccchhhhheeecCCCcEEEEecC-ccccchhhhHhhhhccceeeeeeccCCccEEEecCCC----------c
Confidence 4566788885 568999999999 6799998 4 2333334 3554 9999999976 678899999 9
Q ss_pred EEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCce-ecccccccccCe
Q 005140 286 VINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT-LIDKKSLKVENV 363 (712)
Q Consensus 286 ~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~-~~~~~~~~~~~v 363 (712)
+|++||++..+...++.+....+. .++|+|+.+.+|+++. .|.+++||+..-. ...++..|.+.|
T Consensus 157 ~vK~~DlR~~~S~~t~~~nSESiR-------------DV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV 223 (839)
T KOG0269|consen 157 TVKCWDLRSKKSKSTFRSNSESIR-------------DVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPV 223 (839)
T ss_pred eEEEEeeecccccccccccchhhh-------------ceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCce
Confidence 999999999988888888665553 6899997777888888 8999999998443 444566799999
Q ss_pred eeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEE-EEEEcccccccccccccE
Q 005140 364 MDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYL-AVKVDRYTKTKKSTYTGF 442 (712)
Q Consensus 364 ~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l-~~~~~~~~~~~~~~~~~~ 442 (712)
.++.|+|++.+||+ ||.|+.++||.+..+....+...+ ......++.|-|.-.+. ++++.-. ...+
T Consensus 224 ~c~nwhPnr~~lAT-----GGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~-------dtsV 290 (839)
T KOG0269|consen 224 LCLNWHPNREWLAT-----GGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVV-------DTSV 290 (839)
T ss_pred EEEeecCCCceeee-----cCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccc-------cceE
Confidence 99999999999999 999999999988865554433322 12233467899988754 3333211 1348
Q ss_pred EEEEEecCCcceeEEEecCCCCceEEEEEee-CCCEEEEEEcCC
Q 005140 443 ELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHRFAVIHGDS 485 (712)
Q Consensus 443 ~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~~~~~d~ 485 (712)
.+|+++..-+|. ..+..|...++.++|.. |-..|.+++.|+
T Consensus 291 ~VWDvrRPYIP~--~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~ 332 (839)
T KOG0269|consen 291 HVWDVRRPYIPY--ATFLEHTDSVTGIAWDSGDRINLWSCSKDG 332 (839)
T ss_pred EEEeeccccccc--eeeeccCccccceeccCCCceeeEeecCcc
Confidence 999999877776 44557899999999965 344555566666
No 148
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.77 E-value=3.3e-17 Score=152.54 Aligned_cols=323 Identities=15% Similarity=0.245 Sum_probs=203.3
Q ss_pred eEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc--eEEeecccCcceeeeecCCCeeEEEe
Q 005140 184 QFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG--AAVWGGANTFNRLMRYAHPQVKLIDF 261 (712)
Q Consensus 184 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~--i~iw~~~~~~~~~~~~~~~~v~~i~~ 261 (712)
++.+.+.++.+..|+. .+..-.-.+......+.+++|||||+.|...+.=. |.||.+.++..........++..++|
T Consensus 63 ilC~~yk~~~vqvwsl-~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f 141 (447)
T KOG4497|consen 63 ILCVAYKDPKVQVWSL-VQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAF 141 (447)
T ss_pred eeeeeeccceEEEEEe-ecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEE
Confidence 5556778888889998 34444445566678889999999997766665443 77999983333334444456999999
Q ss_pred cCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec---
Q 005140 262 SPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--- 338 (712)
Q Consensus 262 Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--- 338 (712)
+|||++.+.++..+.. .-+.|.....-..++.|.......+ .+.||| ||..||...
T Consensus 142 ~~dg~f~ai~sRrDCk-------dyv~i~~c~~W~ll~~f~~dT~Dlt-------------gieWsP-dg~~laVwd~~L 200 (447)
T KOG4497|consen 142 HPDGQFCAILSRRDCK-------DYVQISSCKAWILLKEFKLDTIDLT-------------GIEWSP-DGNWLAVWDNVL 200 (447)
T ss_pred CCCCceeeeeecccHH-------HHHHHHhhHHHHHHHhcCCCccccc-------------CceECC-CCcEEEEecchh
Confidence 9999999988765111 1233333333445666766655432 589999 999888655
Q ss_pred CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEEC
Q 005140 339 KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQ 418 (712)
Q Consensus 339 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s 418 (712)
+-.|..|.-. -++..++|+|.+++|++ |+.|+..+|... +.|.
T Consensus 201 eykv~aYe~~------------lG~k~v~wsP~~qflav-----GsyD~~lrvlnh--------------------~tWk 243 (447)
T KOG4497|consen 201 EYKVYAYERG------------LGLKFVEWSPCNQFLAV-----GSYDQMLRVLNH--------------------FTWK 243 (447)
T ss_pred hheeeeeeec------------cceeEEEeccccceEEe-----eccchhhhhhce--------------------eeee
Confidence 3444444322 35888999999999999 888887765321 1222
Q ss_pred cCCCEEEEEEcccccc-------------------cccccccEEEEEEecC-----CcceeEEE------ecCCCCceEE
Q 005140 419 SSGDYLAVKVDRYTKT-------------------KKSTYTGFELFRIKER-----DIPIEVLE------LDNKNDKIIA 468 (712)
Q Consensus 419 ~~g~~l~~~~~~~~~~-------------------~~~~~~~~~l~~l~~~-----~~~~~~~~------l~~h~~~v~~ 468 (712)
+-|.++-.++-..... ......+..+|...+. ..++.... .++..-.+.-
T Consensus 244 ~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~ 323 (447)
T KOG4497|consen 244 PFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGK 323 (447)
T ss_pred ehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccce
Confidence 2222211111100000 0000000011111100 01111111 1122345667
Q ss_pred EEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEe-CCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcc
Q 005140 469 FAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL-KGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL 547 (712)
Q Consensus 469 ~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~-~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~ 547 (712)
++||+|..++|+....-+ +.+.+||++... ....+ ..++|..+.|.|....|+++.. ...+++|.....
T Consensus 324 lafs~Ds~y~aTrnd~~P-nalW~Wdlq~l~------l~avLiQk~piraf~WdP~~prL~vctg---~srLY~W~psg~ 393 (447)
T KOG4497|consen 324 LAFSCDSTYAATRNDKYP-NALWLWDLQNLK------LHAVLIQKHPIRAFEWDPGRPRLVVCTG---KSRLYFWAPSGP 393 (447)
T ss_pred eeecCCceEEeeecCCCC-ceEEEEechhhh------hhhhhhhccceeEEEeCCCCceEEEEcC---CceEEEEcCCCc
Confidence 999999999988776544 389999996533 22222 3568999999999888888775 678999999876
Q ss_pred eeeee-ccccceeeEEECCCCCEEEEEEc
Q 005140 548 ETMAT-AEHFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 548 ~~~~~-~~~~~v~~~~~spdg~~l~t~s~ 575 (712)
..+.. .....|.++.|.-+|.+++..+.
T Consensus 394 ~~V~vP~~GF~i~~l~W~~~g~~i~l~~k 422 (447)
T KOG4497|consen 394 RVVGVPKKGFNIQKLQWLQPGEFIVLCGK 422 (447)
T ss_pred eEEecCCCCceeeeEEecCCCcEEEEEcC
Confidence 66654 45588999999999999999887
No 149
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.76 E-value=7.5e-17 Score=154.58 Aligned_cols=306 Identities=14% Similarity=0.262 Sum_probs=187.9
Q ss_pred ccCCCCCceEEEEECCeeEEEecCCC----CC----CCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecc----
Q 005140 176 LTDEKARDQFVIRSGTDTEVLWNDAR----HL----KPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGA---- 242 (712)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~w~~~~----~~----~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~---- 242 (712)
.+.+.....++...+|..+++|.... .+ .....+.+|...|+++.|+|+|.+||+|+.+| +.+|-..
T Consensus 20 dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~ 99 (434)
T KOG1009|consen 20 DFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRI 99 (434)
T ss_pred EeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCC
Confidence 33343334677788889999997631 11 12336789999999999999999999999999 7799543
Q ss_pred ----c-----C--cce--eeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccc
Q 005140 243 ----N-----T--FNR--LMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFA 309 (712)
Q Consensus 243 ----~-----~--~~~--~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~ 309 (712)
+ . +.. +.+.+...|..++|+|++.++++++.+ ..+++||+..|..+..+..|...+.
T Consensus 100 ~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~d----------ns~~l~Dv~~G~l~~~~~dh~~yvq 169 (434)
T KOG1009|consen 100 FDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVD----------NSVRLWDVHAGQLLAILDDHEHYVQ 169 (434)
T ss_pred ccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeecc----------ceEEEEEeccceeEeeccccccccc
Confidence 1 0 111 222234459999999999999999999 8999999999999999998877652
Q ss_pred cCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccc-------------------cccccC----eee
Q 005140 310 VGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKK-------------------SLKVEN----VMD 365 (712)
Q Consensus 310 ~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~-------------------~~~~~~----v~~ 365 (712)
.++|.| -++|+++.+ |...+++.+.....+... ..|.+. ...
T Consensus 170 -------------gvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrR 235 (434)
T KOG1009|consen 170 -------------GVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRR 235 (434)
T ss_pred -------------eeecch-hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhh
Confidence 489999 999999988 766666655432222111 011111 345
Q ss_pred EEECCCCCeEEEEeecCCCCCCC--eEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEE
Q 005140 366 FSWSPTDPIISLFVPELGGGNQP--ARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFE 443 (712)
Q Consensus 366 ~~~sp~~~~la~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 443 (712)
++|+|+|..|++-...--.+.+. ...+.|+ ++.+.. .++.+ -+|.--.+++... ..
T Consensus 236 lsfTPdG~llvtPag~~~~g~~~~~n~tYvfs---rk~l~r------P~~~l-p~~~k~~lavr~~------------pV 293 (434)
T KOG1009|consen 236 LSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFS---RKDLKR------PAARL-PSPKKPALAVRFS------------PV 293 (434)
T ss_pred cccCCCCcEEEcccceeeeCCceeeceeEeec---cccccC------ceeec-CCCCcceEEEEee------------ee
Confidence 78999999888610000000000 0011111 111100 00000 0111112222211 12
Q ss_pred EEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccC
Q 005140 444 LFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPS 523 (712)
Q Consensus 444 l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spd 523 (712)
.|.++.... ... +---|-+-.||++..+ .|.|||.++.. .+..+..++...++.++||+|
T Consensus 294 y~elrp~~~-----------~~~--~~~lpyrlvfaiAt~~----svyvydtq~~~---P~~~v~nihy~~iTDiaws~d 353 (434)
T KOG1009|consen 294 YYELRPLSS-----------EKF--LFVLPYRLVFAIATKN----SVYVYDTQTLE---PLAVVDNIHYSAITDIAWSDD 353 (434)
T ss_pred EEEeccccc-----------ccc--ccccccceEEEEeecc----eEEEecccccc---ceEEEeeeeeeeecceeecCC
Confidence 333321110 000 1122556667776665 59999986532 233455566678999999999
Q ss_pred CCeEEEEeccCCCceEEEEECCcceee
Q 005140 524 GRFIVLAGLKGFNGQLEFYNVDELETM 550 (712)
Q Consensus 524 g~~l~~~~~~~~dg~v~iwd~~~~~~~ 550 (712)
|.+|++.+. ||.+.+..++..++-
T Consensus 354 g~~l~vSS~---DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 354 GSVLLVSST---DGFCSLVTFEPWELG 377 (434)
T ss_pred CcEEEEecc---CCceEEEEEcchhcc
Confidence 999999998 999888877755543
No 150
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.76 E-value=7.9e-17 Score=157.71 Aligned_cols=285 Identities=14% Similarity=0.213 Sum_probs=186.2
Q ss_pred EEECCeeEEEecCCC-CCCCcccccCCCcccceEEEcCCCcEEEEEec--Cc-eEEeecccC---cceeeeecCCCeeEE
Q 005140 187 IRSGTDTEVLWNDAR-HLKPEPVYKRSYWTESFVQWSPLGTYLATVHR--QG-AAVWGGANT---FNRLMRYAHPQVKLI 259 (712)
Q Consensus 187 ~~~~~~~~~~w~~~~-~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~--~~-i~iw~~~~~---~~~~~~~~~~~v~~i 259 (712)
+.++...+.+|+... ..++....+.....+.++.|+.... |++++. +. +++|.-.+. -.++.......-.|+
T Consensus 7 ~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv 85 (673)
T KOG4378|consen 7 VASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCV 85 (673)
T ss_pred eeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHHHH
Confidence 344445566998621 2222222222223488999998765 555544 44 568865522 112222222333444
Q ss_pred EecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-
Q 005140 260 DFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG- 338 (712)
Q Consensus 260 ~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~- 338 (712)
+......|+++|+.. ++|+|||++...+.+.++.|...++ ++.+.- .+.|||+++
T Consensus 86 ~~~s~S~y~~sgG~~----------~~Vkiwdl~~kl~hr~lkdh~stvt-------------~v~YN~-~DeyiAsvs~ 141 (673)
T KOG4378|consen 86 ACASQSLYEISGGQS----------GCVKIWDLRAKLIHRFLKDHQSTVT-------------YVDYNN-TDEYIASVSD 141 (673)
T ss_pred hhhhcceeeeccCcC----------ceeeehhhHHHHHhhhccCCcceeE-------------EEEecC-CcceeEEecc
Confidence 444444899999999 9999999987777888888887664 677887 889999999
Q ss_pred CCeEEEEEcCCceecccccccc-cCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEE
Q 005140 339 KNMISVYETESFTLIDKKSLKV-ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYW 417 (712)
Q Consensus 339 d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (712)
.|.|.|..+.++.....+.... ..|.-+.|||..++++.. ++.++.+.
T Consensus 142 gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~----asd~G~Vt--------------------------- 190 (673)
T KOG4378|consen 142 GGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSI----ASDKGAVT--------------------------- 190 (673)
T ss_pred CCcEEEEecccCccccceecCCCCeEEEeecccccceeeEe----eccCCeEE---------------------------
Confidence 8899999988765443332221 235567777776666543 33333333
Q ss_pred CcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCC-CEEEEEEcCCCCCeEEEEEee
Q 005140 418 QSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG-HRFAVIHGDSPRPDISFYSMR 496 (712)
Q Consensus 418 s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g-~~l~~~~~d~~~~~v~i~d~~ 496 (712)
+|++....... .-...|..+...++|+|.. ..|++.+.|. .|.+||+.
T Consensus 191 --------------------------lwDv~g~sp~~--~~~~~HsAP~~gicfspsne~l~vsVG~Dk---ki~~yD~~ 239 (673)
T KOG4378|consen 191 --------------------------LWDVQGMSPIF--HASEAHSAPCRGICFSPSNEALLVSVGYDK---KINIYDIR 239 (673)
T ss_pred --------------------------EEeccCCCccc--chhhhccCCcCcceecCCccceEEEecccc---eEEEeecc
Confidence 33332211000 1123678899999999965 5566667788 99999997
Q ss_pred cccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCccee---eeeccccceeeEEECCCC
Q 005140 497 TAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET---MATAEHFMATDVEWDPTG 567 (712)
Q Consensus 497 ~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~---~~~~~~~~v~~~~~spdg 567 (712)
+.. ....+. .++...++|+++|.+|+.|.. .|.|..||++..+. +...|...|++++|-|.-
T Consensus 240 s~~------s~~~l~y~~Plstvaf~~~G~~L~aG~s---~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 240 SQA------STDRLTYSHPLSTVAFSECGTYLCAGNS---KGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ccc------ccceeeecCCcceeeecCCceEEEeecC---CceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 543 222332 568899999999999999998 99999999995443 234677889999998764
No 151
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=6.6e-17 Score=163.54 Aligned_cols=339 Identities=11% Similarity=0.099 Sum_probs=220.5
Q ss_pred EEEEECCeeEEEecCCCCCC-----CcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcc--eeeee-cCCC
Q 005140 185 FVIRSGTDTEVLWNDARHLK-----PEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN--RLMRY-AHPQ 255 (712)
Q Consensus 185 ~~~~~~~~~~~~w~~~~~~~-----~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~--~~~~~-~~~~ 255 (712)
++.++.|+.+++|+...... ....++.|..=|+.++.-.+|+.|++++.|. |++|+.. ... .+.++ .|.+
T Consensus 40 LfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~-~~~~~c~stir~H~D 118 (735)
T KOG0308|consen 40 LFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAH-KDNTFCMSTIRTHKD 118 (735)
T ss_pred EEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecc-cCcchhHhhhhcccc
Confidence 34445577888999854333 3567788998889999999999999999998 8899988 432 22233 3554
Q ss_pred -eeEEEe-cCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC--ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC
Q 005140 256 -VKLIDF-SPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG--KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 331 (712)
Q Consensus 256 -v~~i~~-Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg 331 (712)
|.|++. -++...+|+|+-| +.|.+||+.+| ..+.++..-...... .+...+ .+ +++-.+ .|
T Consensus 119 YVkcla~~ak~~~lvaSgGLD----------~~IflWDin~~~~~l~~s~n~~t~~sl~--sG~k~s-iY-SLA~N~-t~ 183 (735)
T KOG0308|consen 119 YVKCLAYIAKNNELVASGGLD----------RKIFLWDINTGTATLVASFNNVTVNSLG--SGPKDS-IY-SLAMNQ-TG 183 (735)
T ss_pred hheeeeecccCceeEEecCCC----------ccEEEEEccCcchhhhhhccccccccCC--CCCccc-ee-eeecCC-cc
Confidence 999999 8888999999999 99999999888 344444332221110 011111 12 577788 88
Q ss_pred CEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeee
Q 005140 332 KYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV 410 (712)
Q Consensus 332 ~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 410 (712)
..|++++ .+.|++||..+++.+-+...|..+|..+..++||..+++ ++.|+.+++ |++...+.+.+...+..
T Consensus 184 t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls-----~sSDgtIrl--WdLgqQrCl~T~~vH~e 256 (735)
T KOG0308|consen 184 TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLS-----ASSDGTIRL--WDLGQQRCLATYIVHKE 256 (735)
T ss_pred eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEee-----cCCCceEEe--eeccccceeeeEEeccC
Confidence 8899988 999999999999888888899999999999999999999 777777664 56666667776666666
Q ss_pred cceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeE
Q 005140 411 SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDI 490 (712)
Q Consensus 411 ~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v 490 (712)
....+.-+|+=.+++++..++. +..-+++.. ...++-+ ....+|..+..+-..+-+-++..|+ .|
T Consensus 257 ~VWaL~~~~sf~~vYsG~rd~~---------i~~Tdl~n~--~~~tlic-k~daPv~~l~~~~~~~~~WvtTtds---~I 321 (735)
T KOG0308|consen 257 GVWALQSSPSFTHVYSGGRDGN---------IYRTDLRNP--AKSTLIC-KEDAPVLKLHLHEHDNSVWVTTTDS---SI 321 (735)
T ss_pred ceEEEeeCCCcceEEecCCCCc---------EEecccCCc--hhheEee-cCCCchhhhhhccccCCceeeeccc---cc
Confidence 6666666777778888777765 233333322 1111111 1244555555554333334455555 66
Q ss_pred EEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCc-ceeeeeccccceeeEEECCCCCE
Q 005140 491 SFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE-LETMATAEHFMATDVEWDPTGRY 569 (712)
Q Consensus 491 ~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~-~~~~~~~~~~~v~~~~~spdg~~ 569 (712)
+-|...- .+.+++.|+....++ +.....++... -..+. .....+...+.-.|-|+
T Consensus 322 ~rW~~~~-------------------~~~l~~s~~~~~~~T----~~~~~~~~~~~tp~~vi-~Gg~ai~k~~mL~dkRh 377 (735)
T KOG0308|consen 322 KRWKLEP-------------------DIALSVSGDLDFFST----DSNNHSCDLTNTPDSVI-PGGAAIKKHAMLNDKRH 377 (735)
T ss_pred eecCCcc-------------------ccccccCCCCCcccc----cCCCccccccCCCceec-cCchhhhhhhhhcCcce
Confidence 6665421 113444555444332 33333333221 11111 11234455566667888
Q ss_pred EEEEEccceeccccEEEEEec
Q 005140 570 VATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 570 l~t~s~~~~~~d~~v~iw~~~ 590 (712)
++|-.. .|.+.+||+-
T Consensus 378 VlTkDa-----~gnv~lwDIl 393 (735)
T KOG0308|consen 378 VLTKDA-----KGNVALWDIL 393 (735)
T ss_pred EeeecC-----CCCEEEEEee
Confidence 888888 8889999864
No 152
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=5.3e-16 Score=143.53 Aligned_cols=252 Identities=17% Similarity=0.328 Sum_probs=175.9
Q ss_pred CCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC----ceeeeccCCCcccccCCCCCcCCCCcCeEEec
Q 005140 253 HPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG----KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWG 327 (712)
Q Consensus 253 ~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 327 (712)
|.+ |.++.|.+-|+++|+|+.| ++|+|||..+. .+-...+.|.+.+ | .+.|.
T Consensus 12 h~DlihdVs~D~~GRRmAtCSsD----------q~vkI~d~~~~s~~W~~Ts~Wrah~~Si------------~-rV~WA 68 (361)
T KOG2445|consen 12 HKDLIHDVSFDFYGRRMATCSSD----------QTVKIWDSTSDSGTWSCTSSWRAHDGSI------------W-RVVWA 68 (361)
T ss_pred CcceeeeeeecccCceeeeccCC----------CcEEEEeccCCCCceEEeeeEEecCCcE------------E-EEEec
Confidence 444 9999999999999999999 99999996433 2455667777766 5 47886
Q ss_pred CC-CCCEEEEec-CCeEEEEEcCCce-------e--cccccccccCeeeEEECCC--CCeEEEEeecCCCCCCCeEEEEE
Q 005140 328 GG-KDKYFAKLG-KNMISVYETESFT-------L--IDKKSLKVENVMDFSWSPT--DPIISLFVPELGGGNQPARVSLV 394 (712)
Q Consensus 328 ~~-dg~~la~~~-d~~i~iwd~~~~~-------~--~~~~~~~~~~v~~~~~sp~--~~~la~~~~~~~~~~~~~~i~~~ 394 (712)
+. -|+.+|+++ |+++.||+-.... - .....-....|.++.|+|. |-.||+ ++.|+.+|| |
T Consensus 69 hPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~-----~~aDG~lRI--Y 141 (361)
T KOG2445|consen 69 HPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAA-----ASADGILRI--Y 141 (361)
T ss_pred CccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEE-----eccCcEEEE--E
Confidence 53 588999999 9999999853111 1 1111123345999999997 667777 566666554 5
Q ss_pred ecCCccceee-------------eeeeeecceeEEECcC---CCEEEEEEcccccccccccccEEEEEEecCCcc-eeEE
Q 005140 395 QIPSKEELRQ-------------KNLFSVSDCKMYWQSS---GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIP-IEVL 457 (712)
Q Consensus 395 ~~~~~~~~~~-------------~~~~~~~~~~~~~s~~---g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~ 457 (712)
+.+..-.+.. ...+.....++.|+|. ..+|+++++... .......||...+.+.. ...-
T Consensus 142 EA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a----~~~~~~~Iye~~e~~rKw~kva 217 (361)
T KOG2445|consen 142 EAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDA----PHLNKVKIYEYNENGRKWLKVA 217 (361)
T ss_pred ecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCC----ccccceEEEEecCCcceeeeeh
Confidence 5444322221 1123445567789864 358888887622 11223678888776633 3334
Q ss_pred EecCCCCceEEEEEeeC----CCEEEEEEcCCCCCeEEEEEeecc--------------cccCceeEEEEeCCC--ceeE
Q 005140 458 ELDNKNDKIIAFAWEPK----GHRFAVIHGDSPRPDISFYSMRTA--------------QHAGRVSKLTTLKGK--QANA 517 (712)
Q Consensus 458 ~l~~h~~~v~~~~~sp~----g~~l~~~~~d~~~~~v~i~d~~~~--------------~~~~~~~~~~~~~~~--~v~~ 517 (712)
++++|..+|++++|+|+ -..||+++.|| |+||.+... .....+..+..+.+| .+..
T Consensus 218 ~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg----v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWr 293 (361)
T KOG2445|consen 218 ELPDHTDPIRDISWAPNIGRSYHLLAVATKDG----VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWR 293 (361)
T ss_pred hcCCCCCcceeeeeccccCCceeeEEEeecCc----EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEE
Confidence 57899999999999995 35788888887 999999731 111234556666665 6899
Q ss_pred EEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 518 LFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 518 l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
+.|+-.|..|++.+. ||.|++|...
T Consensus 294 v~wNmtGtiLsStGd---DG~VRLWkan 318 (361)
T KOG2445|consen 294 VRWNMTGTILSSTGD---DGCVRLWKAN 318 (361)
T ss_pred EEEeeeeeEEeecCC---Cceeeehhhh
Confidence 999999999999988 9999999765
No 153
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.75 E-value=4.9e-16 Score=142.62 Aligned_cols=289 Identities=17% Similarity=0.261 Sum_probs=179.3
Q ss_pred cCCCeeEEEecC-CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCce--eeeccCCCcc-cc-cCCCCCcCCCCcCeEEe
Q 005140 252 AHPQVKLIDFSP-GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKV--MRDFKGSADE-FA-VGGTGGVAGVSWPVFRW 326 (712)
Q Consensus 252 ~~~~v~~i~~Sp-dg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~--~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~ 326 (712)
|...|.++...| .|+|+++|+.| |.|.|||++.... ...+...... +. +...+...+++ .+.|
T Consensus 42 HgGsvNsL~id~tegrymlSGgad----------gsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~is--s~~W 109 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGAD----------GSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAIS--SAIW 109 (397)
T ss_pred CCCccceeeeccccceEEeecCCC----------ccEEEEEeccccchhhccceeheeeeccccCCccceeeee--eeEE
Confidence 334589999888 48999999999 9999999965431 0000000000 00 00111122222 6788
Q ss_pred cCCCCCEEEEec-CCeEEEEEcCCceeccccccccc-CeeeEEECCCCC---eEEEEeecCCCCCCCeEEEEEecCCccc
Q 005140 327 GGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVE-NVMDFSWSPTDP---IISLFVPELGGGNQPARVSLVQIPSKEE 401 (712)
Q Consensus 327 s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~sp~~~---~la~~~~~~~~~~~~~~i~~~~~~~~~~ 401 (712)
-|.|...|.+++ |.+++|||.++.+..... .++ .|..-+|||-.. .||+ |..+. .
T Consensus 110 yP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F--~me~~VYshamSp~a~sHcLiA~-----gtr~~--~----------- 169 (397)
T KOG4283|consen 110 YPIDTGMFTSSSFDHTLKVWDTNTLQEAVDF--KMEGKVYSHAMSPMAMSHCLIAA-----GTRDV--Q----------- 169 (397)
T ss_pred eeecCceeecccccceEEEeecccceeeEEe--ecCceeehhhcChhhhcceEEEE-----ecCCC--c-----------
Confidence 886666777777 999999999977654332 232 366667777421 2232 22222 2
Q ss_pred eeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEE-EE
Q 005140 402 LRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRF-AV 480 (712)
Q Consensus 402 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l-~~ 480 (712)
++|.++.... ....|.+|.+.|.++.|+|...++ ++
T Consensus 170 ----------------------------------------VrLCDi~SGs---~sH~LsGHr~~vlaV~Wsp~~e~vLat 206 (397)
T KOG4283|consen 170 ----------------------------------------VRLCDIASGS---FSHTLSGHRDGVLAVEWSPSSEWVLAT 206 (397)
T ss_pred ----------------------------------------EEEEeccCCc---ceeeeccccCceEEEEeccCceeEEEe
Confidence 3333333221 225677999999999999988765 55
Q ss_pred EEcCCCCCeEEEEEeecccccCce---------eEEE--EeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCccee
Q 005140 481 IHGDSPRPDISFYSMRTAQHAGRV---------SKLT--TLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET 549 (712)
Q Consensus 481 ~~~d~~~~~v~i~d~~~~~~~~~~---------~~~~--~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~ 549 (712)
++.|+ .|++||++...+-..+ ..+. .-..+.++.++|+.+|+++++.+. |..+++|+..+|+.
T Consensus 207 gsaDg---~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt---d~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 207 GSADG---AIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT---DDRIRVWNMESGRN 280 (397)
T ss_pred cCCCc---eEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC---ccceEEeecccCcc
Confidence 66688 9999999864331111 0011 111235789999999999999998 99999999886543
Q ss_pred eee-----cc----ccceeeEEECCCCCEEEEEEccceeccccEEEEEec-Cceeee--ecccceeeeEEecCCCCCCCh
Q 005140 550 MAT-----AE----HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYR--TLKDHFFQFLWRPRPPSFLTP 617 (712)
Q Consensus 550 ~~~-----~~----~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~--~~~~~i~~~~w~p~~~~l~s~ 617 (712)
... .+ +..+. +. +.+...++.--. ++++.++++- |..+.. .|...+.+..++|+-+...++
T Consensus 281 tl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~-----~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg 353 (397)
T KOG4283|consen 281 TLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPN-----DGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTG 353 (397)
T ss_pred cccccccccccccccceEE-Ee-ecccceEEEEec-----CCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcc
Confidence 221 11 11122 22 333333333333 6778888754 554443 356788899999999999999
Q ss_pred hhHHHHHHHHH
Q 005140 618 EKEEEIAKNLK 628 (712)
Q Consensus 618 ~~d~~i~~~~~ 628 (712)
..++.|--++.
T Consensus 354 ~~d~ni~~w~p 364 (397)
T KOG4283|consen 354 DMNGNIYMWSP 364 (397)
T ss_pred ccCCccccccc
Confidence 99988876654
No 154
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.75 E-value=4.1e-15 Score=141.30 Aligned_cols=235 Identities=14% Similarity=0.254 Sum_probs=171.8
Q ss_pred CcccceEEEcCCCcEEEEEecCceEEeecccCcceeeeecCCC--eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEE
Q 005140 213 YWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQ--VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIF 290 (712)
Q Consensus 213 ~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~~--v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iw 290 (712)
..++.++.|..++..|..|+.+|.+++... .+........++ |--+.||.+ .+|..+.+.+ ..+++.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~-~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qp--------r~Lkv~ 73 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCS-PFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQP--------RKLKVV 73 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecC-chHHhhcccCCCeEEEEeecccc--eeEEEecCCC--------ceEEEE
Confidence 346677889999999999999999999988 555422222333 666777754 5555555421 579999
Q ss_pred EccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceeccccccc---ccCeeeEE
Q 005140 291 DVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLK---VENVMDFS 367 (712)
Q Consensus 291 d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~---~~~v~~~~ 367 (712)
+...+..+..+..+.... ++++.. +.|+.+-...|.|||+.+++++...... ..++..++
T Consensus 74 ~~Kk~~~ICe~~fpt~IL--------------~VrmNr---~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS 136 (391)
T KOG2110|consen 74 HFKKKTTICEIFFPTSIL--------------AVRMNR---KRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALS 136 (391)
T ss_pred EcccCceEEEEecCCceE--------------EEEEcc---ceEEEEEcccEEEEecccceeehhhhccCCCccceEeec
Confidence 998888888777666544 566644 6777777666999999999998765432 33577777
Q ss_pred ECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEE
Q 005140 368 WSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRI 447 (712)
Q Consensus 368 ~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l 447 (712)
.++.+.+||+ .+....+.|.+|+..+.
T Consensus 137 ~n~~n~ylAy-----p~s~t~GdV~l~d~~nl------------------------------------------------ 163 (391)
T KOG2110|consen 137 PNNANCYLAY-----PGSTTSGDVVLFDTINL------------------------------------------------ 163 (391)
T ss_pred cCCCCceEEe-----cCCCCCceEEEEEcccc------------------------------------------------
Confidence 7777889988 33333444444433211
Q ss_pred ecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC----ceeEEEEccC
Q 005140 448 KERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK----QANALFWSPS 523 (712)
Q Consensus 448 ~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~----~v~~l~~spd 523 (712)
.++ ..+.+|.+++-+++|+|+|.+||+++..|+ -|++|.+.+++ .+..+..+ .|.+++|+|+
T Consensus 164 ----~~v--~~I~aH~~~lAalafs~~G~llATASeKGT--VIRVf~v~~G~------kl~eFRRG~~~~~IySL~Fs~d 229 (391)
T KOG2110|consen 164 ----QPV--NTINAHKGPLAALAFSPDGTLLATASEKGT--VIRVFSVPEGQ------KLYEFRRGTYPVSIYSLSFSPD 229 (391)
T ss_pred ----eee--eEEEecCCceeEEEECCCCCEEEEeccCce--EEEEEEcCCcc------EeeeeeCCceeeEEEEEEECCC
Confidence 111 234589999999999999999999999884 78999997766 56666644 5789999999
Q ss_pred CCeEEEEeccCCCceEEEEECC
Q 005140 524 GRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 524 g~~l~~~~~~~~dg~v~iwd~~ 545 (712)
+++|++.+. .++|++|.++
T Consensus 230 s~~L~~sS~---TeTVHiFKL~ 248 (391)
T KOG2110|consen 230 SQFLAASSN---TETVHIFKLE 248 (391)
T ss_pred CCeEEEecC---CCeEEEEEec
Confidence 999999987 8999999886
No 155
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.75 E-value=1.6e-16 Score=148.14 Aligned_cols=311 Identities=10% Similarity=0.155 Sum_probs=215.9
Q ss_pred cCCCcccceEEEcC-----CCcEEEEEecCceEEeecccCc--ceeeeec---CC-CeeEEEecCC----CCEEEEEcCC
Q 005140 210 KRSYWTESFVQWSP-----LGTYLATVHRQGAAVWGGANTF--NRLMRYA---HP-QVKLIDFSPG----EKYLVTYSSH 274 (712)
Q Consensus 210 ~~~~~~v~~v~~Sp-----dg~~lat~~~~~i~iw~~~~~~--~~~~~~~---~~-~v~~i~~Spd----g~~l~t~s~d 274 (712)
..|..++..++|.+ .-+.+||++.+.+.||...+.+ ..+.++. ++ ....++|+-| ..+||.++.-
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~ 114 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYL 114 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecce
Confidence 45667888888885 3357888888888898876433 3344442 33 2677888765 3478888887
Q ss_pred CCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceec
Q 005140 275 EPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLI 353 (712)
Q Consensus 275 ~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~ 353 (712)
|.|+|.|+.+++....+.+|...+. .+++.|.+.+++++++ |.+|++|++.+...+
T Consensus 115 ----------GvIrVid~~~~~~~~~~~ghG~sIN-------------eik~~p~~~qlvls~SkD~svRlwnI~~~~Cv 171 (385)
T KOG1034|consen 115 ----------GVIRVIDVVSGQCSKNYRGHGGSIN-------------EIKFHPDRPQLVLSASKDHSVRLWNIQTDVCV 171 (385)
T ss_pred ----------eEEEEEecchhhhccceeccCccch-------------hhhcCCCCCcEEEEecCCceEEEEeccCCeEE
Confidence 9999999999999999999988764 6888883446888888 999999999998866
Q ss_pred ccc---cccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcc
Q 005140 354 DKK---SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDR 430 (712)
Q Consensus 354 ~~~---~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~ 430 (712)
... ..|...|.++.|+++|.+|++ +|.|...++|.++.+.....- ...+.|+|++...-+.+..
T Consensus 172 ~VfGG~egHrdeVLSvD~~~~gd~i~S-----cGmDhslk~W~l~~~~f~~~l--------E~s~~~~~~~t~~pfpt~~ 238 (385)
T KOG1034|consen 172 AVFGGVEGHRDEVLSVDFSLDGDRIAS-----CGMDHSLKLWRLNVKEFKNKL--------ELSITYSPNKTTRPFPTPK 238 (385)
T ss_pred EEecccccccCcEEEEEEcCCCCeeec-----cCCcceEEEEecChhHHhhhh--------hhhcccCCCCccCcCCccc
Confidence 433 457777999999999999999 889999998887765543211 1123466665432111000
Q ss_pred cccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeec-cc-------ccC
Q 005140 431 YTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRT-AQ-------HAG 502 (712)
Q Consensus 431 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~-~~-------~~~ 502 (712)
..+.+.. +-.-|...|-|+.|- |+++++-+.++ .|..|..-. .. ...
T Consensus 239 -----------~~fp~fs---------t~diHrnyVDCvrw~--gd~ilSkscen---aI~~w~pgkl~e~~~~vkp~es 293 (385)
T KOG1034|consen 239 -----------THFPDFS---------TTDIHRNYVDCVRWF--GDFILSKSCEN---AIVCWKPGKLEESIHNVKPPES 293 (385)
T ss_pred -----------ccccccc---------ccccccchHHHHHHH--hhheeecccCc---eEEEEecchhhhhhhccCCCcc
Confidence 0111111 112467788888874 57787777777 888887721 11 111
Q ss_pred ceeEEEEeCCC--cee--EEEEccCCCeEEEEeccCCCceEEEEECCcceee------eeccccceeeEEECCCCCEEEE
Q 005140 503 RVSKLTTLKGK--QAN--ALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETM------ATAEHFMATDVEWDPTGRYVAT 572 (712)
Q Consensus 503 ~~~~~~~~~~~--~v~--~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~------~~~~~~~v~~~~~spdg~~l~t 572 (712)
....+..+.-. .+. .++|.|-++.||.+.. .|.|++||++..... .......|...+||.||..|+.
T Consensus 294 ~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq---~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~ 370 (385)
T KOG1034|consen 294 ATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQ---SGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVL 370 (385)
T ss_pred ceeeeeEeccCccceEEEEEeecHHHHHHhhccC---CCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEE
Confidence 12233444322 233 3567788999999988 999999999865431 1233467889999999999999
Q ss_pred EEccceeccccEEEEEe
Q 005140 573 AVTSVHEMENGFNIWSF 589 (712)
Q Consensus 573 ~s~~~~~~d~~v~iw~~ 589 (712)
... |+.|.=||.
T Consensus 371 vcd-----d~~Vwrwdr 382 (385)
T KOG1034|consen 371 VCD-----DGTVWRWDR 382 (385)
T ss_pred EeC-----CCcEEEEEe
Confidence 999 899988884
No 156
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=7.8e-16 Score=142.77 Aligned_cols=273 Identities=15% Similarity=0.145 Sum_probs=186.5
Q ss_pred ccchhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCccee
Q 005140 170 ENLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRL 248 (712)
Q Consensus 170 ~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~ 248 (712)
+-+.+.-++| ....+++++-|+...+|+.+.. .....-.|..++.+++|.++ ..+++|+-|| |+++|+. +....
T Consensus 14 d~IS~v~f~~-~~~~LLvssWDgslrlYdv~~~--~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln-~~~~~ 88 (323)
T KOG1036|consen 14 DGISSVKFSP-SSSDLLVSSWDGSLRLYDVPAN--SLKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLN-TGNED 88 (323)
T ss_pred hceeeEEEcC-cCCcEEEEeccCcEEEEeccch--hhhhheecCCceeeeeccCC-ceEEEeccCceEEEEEec-CCcce
Confidence 4445555664 4445677789999999998433 33334467889999999985 4578888888 9999999 55555
Q ss_pred eeecCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEec
Q 005140 249 MRYAHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWG 327 (712)
Q Consensus 249 ~~~~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 327 (712)
....|. +|+||.+++-...+++|+.| ++|++||.+.....-.+..... ..+.+
T Consensus 89 ~igth~~~i~ci~~~~~~~~vIsgsWD----------~~ik~wD~R~~~~~~~~d~~kk----------------Vy~~~ 142 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVGCVISGSWD----------KTIKFWDPRNKVVVGTFDQGKK----------------VYCMD 142 (323)
T ss_pred eeccCCCceEEEEeeccCCeEEEcccC----------ccEEEEeccccccccccccCce----------------EEEEe
Confidence 555555 59999999988899999999 9999999876544445544432 23445
Q ss_pred CCCCCEEEEec-CCeEEEEEcCCceecccc---cccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcccee
Q 005140 328 GGKDKYFAKLG-KNMISVYETESFTLIDKK---SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELR 403 (712)
Q Consensus 328 ~~dg~~la~~~-d~~i~iwd~~~~~~~~~~---~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~ 403 (712)
- .|..|+.+. +..+.+||+++....... .++. .+.++++-|++.-.++ ++-++.+.+-.++.. ....
T Consensus 143 v-~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lky-qtR~v~~~pn~eGy~~-----sSieGRVavE~~d~s--~~~~ 213 (323)
T KOG1036|consen 143 V-SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKY-QTRCVALVPNGEGYVV-----SSIEGRVAVEYFDDS--EEAQ 213 (323)
T ss_pred c-cCCEEEEeecCceEEEEEcccccchhhhcccccee-EEEEEEEecCCCceEE-----EeecceEEEEccCCc--hHHh
Confidence 5 666676655 999999999976643211 1121 3789999997766666 556665555444432 1100
Q ss_pred eeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEc
Q 005140 404 QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG 483 (712)
Q Consensus 404 ~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~ 483 (712)
.+..++ +.++...++.. + -.+|++++|+|-...||+++.
T Consensus 214 -----------------skkyaF----------------kCHr~~~~~~~-----~---~yPVNai~Fhp~~~tfaTgGs 252 (323)
T KOG1036|consen 214 -----------------SKKYAF----------------KCHRLSEKDTE-----I---IYPVNAIAFHPIHGTFATGGS 252 (323)
T ss_pred -----------------hhceeE----------------EeeecccCCce-----E---EEEeceeEeccccceEEecCC
Confidence 111111 22222222211 1 358999999999999999999
Q ss_pred CCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEec
Q 005140 484 DSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGL 532 (712)
Q Consensus 484 d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~ 532 (712)
|| .|.+||+.+.+ .+..+. ...|.+++|+-+|..||+++.
T Consensus 253 DG---~V~~Wd~~~rK------rl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 253 DG---IVNIWDLFNRK------RLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred Cc---eEEEccCcchh------hhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 99 99999996544 334443 336899999999999999875
No 157
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=9.6e-17 Score=173.08 Aligned_cols=241 Identities=19% Similarity=0.352 Sum_probs=173.8
Q ss_pred cCeEEecCCCCCE----EEEec-CCeEEEEEcCCc------eecccccccccCeeeEEECCCCC-eEEEEeecCCCCCCC
Q 005140 321 WPVFRWGGGKDKY----FAKLG-KNMISVYETESF------TLIDKKSLKVENVMDFSWSPTDP-IISLFVPELGGGNQP 388 (712)
Q Consensus 321 ~~~~~~s~~dg~~----la~~~-d~~i~iwd~~~~------~~~~~~~~~~~~v~~~~~sp~~~-~la~~~~~~~~~~~~ 388 (712)
|..++|++ .|.. ||.+. ||.|.+|+.... .++..+..|.+.|..+.|++... .||. ++..
T Consensus 67 F~kL~W~~-~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLAS-------Ga~~ 138 (1049)
T KOG0307|consen 67 FNKLAWGS-YGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLAS-------GADD 138 (1049)
T ss_pred ceeeeecc-cCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeec-------cCCC
Confidence 44789988 7765 66666 999999997642 24555667888899999999865 7776 5555
Q ss_pred eEEEEEecCCccc-eee-eeeeeecceeEEECcCCCEE-EEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCc
Q 005140 389 ARVSLVQIPSKEE-LRQ-KNLFSVSDCKMYWQSSGDYL-AVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDK 465 (712)
Q Consensus 389 ~~i~~~~~~~~~~-~~~-~~~~~~~~~~~~~s~~g~~l-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~ 465 (712)
+.|++||+...+. ... .......+..++|+..-.++ +.++.++. ..+|+++.+ .++-.+...+....
T Consensus 139 geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~---------~~iWDlr~~-~pii~ls~~~~~~~ 208 (1049)
T KOG0307|consen 139 GEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGR---------AVIWDLRKK-KPIIKLSDTPGRMH 208 (1049)
T ss_pred CcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCC---------ceeccccCC-CcccccccCCCccc
Confidence 5666677655332 111 11134455667898876654 44544444 689999976 33322222222345
Q ss_pred eEEEEEeeCC-CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCC-CeEEEEeccCCCceEEE
Q 005140 466 IIAFAWEPKG-HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSG-RFIVLAGLKGFNGQLEF 541 (712)
Q Consensus 466 v~~~~~sp~g-~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg-~~l~~~~~~~~dg~v~i 541 (712)
+..++|+|+. ..++++++|...+.|.+||++.... +++.+.+| .|.++.|++.+ ++|++++. |+.+.+
T Consensus 209 ~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass-----P~k~~~~H~~GilslsWc~~D~~lllSsgk---D~~ii~ 280 (1049)
T KOG0307|consen 209 CSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS-----PLKILEGHQRGILSLSWCPQDPRLLLSSGK---DNRIIC 280 (1049)
T ss_pred eeeeeeCCCCceeeeeecCCCCCceeEeecccccCC-----chhhhcccccceeeeccCCCCchhhhcccC---CCCeeE
Confidence 7789999965 6788888887777999999976543 55555555 68999999977 78888888 999999
Q ss_pred EECCcceeeeeccc--cceeeEEECCCCC-EEEEEEccceeccccEEEEEecCc
Q 005140 542 YNVDELETMATAEH--FMATDVEWDPTGR-YVATAVTSVHEMENGFNIWSFNGK 592 (712)
Q Consensus 542 wd~~~~~~~~~~~~--~~v~~~~~spdg~-~l~t~s~~~~~~d~~v~iw~~~g~ 592 (712)
|+.++++++..... ..+..+.|+|..- .++.++- ||.|.||++.|.
T Consensus 281 wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asf-----dgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 281 WNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASF-----DGKISIYSLQGT 329 (1049)
T ss_pred ecCCCceEeeecCCCCcceeeeeecCCCcchhhhhee-----ccceeeeeeecC
Confidence 99999999987544 6789999999776 6666677 999999998754
No 158
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.74 E-value=4.1e-16 Score=145.08 Aligned_cols=278 Identities=15% Similarity=0.240 Sum_probs=179.3
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceee------eccCCCcccccCCCCCcCCCCcCeEEec--
Q 005140 256 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMR------DFKGSADEFAVGGTGGVAGVSWPVFRWG-- 327 (712)
Q Consensus 256 v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~s-- 327 (712)
...+.|||||..|++-+.+ ..+.+|++...-.-. .+..+.. +.......+. ..+|-
T Consensus 52 ~kgckWSPDGSciL~~sed----------n~l~~~nlP~dlys~~~~~~~~~~~~~~-~r~~eg~tvy-----dy~wYs~ 115 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSED----------NCLNCWNLPFDLYSKKADGPLNFSKHLS-YRYQEGETVY-----DYCWYSR 115 (406)
T ss_pred hccceeCCCCceEEeeccc----------CeeeEEecChhhcccCCCCcccccccee-EEeccCCEEE-----EEEeeec
Confidence 5688999999999999999 889999974211000 0110100 0000011112 23443
Q ss_pred -----CCCCCEEEEec-CCeEEEEEcCCceecccccc--cc---cCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEec
Q 005140 328 -----GGKDKYFAKLG-KNMISVYETESFTLIDKKSL--KV---ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQI 396 (712)
Q Consensus 328 -----~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~--~~---~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~ 396 (712)
| +..++|+.+ +.-|++||.-+|++...... |. ....+++|+|||..|.. +....++|+...-
T Consensus 116 M~s~qP-~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa------GykrcirvFdt~R 188 (406)
T KOG2919|consen 116 MKSDQP-STNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA------GYKRCIRVFDTSR 188 (406)
T ss_pred cccCCC-ccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee------cccceEEEeeccC
Confidence 5 667888888 99999999999987665433 22 24678899999998874 3444545433221
Q ss_pred CCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeC-C
Q 005140 397 PSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK-G 475 (712)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~-g 475 (712)
|-... .+|..-.++ . .+..+-|.+++|+|. .
T Consensus 189 pGr~c-----------------------------------------~vy~t~~~~------k-~gq~giisc~a~sP~~~ 220 (406)
T KOG2919|consen 189 PGRDC-----------------------------------------PVYTTVTKG------K-FGQKGIISCFAFSPMDS 220 (406)
T ss_pred CCCCC-----------------------------------------cchhhhhcc------c-ccccceeeeeeccCCCC
Confidence 11110 000000000 0 022677889999994 5
Q ss_pred CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCccee-eee
Q 005140 476 HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET-MAT 552 (712)
Q Consensus 476 ~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~-~~~ 552 (712)
+.+++++... .+-||.-..+. ++..+.++ .|+.++|.++|+.|++|+.. +-.|..||++.... +..
T Consensus 221 ~~~a~gsY~q---~~giy~~~~~~------pl~llggh~gGvThL~~~edGn~lfsGaRk--~dkIl~WDiR~~~~pv~~ 289 (406)
T KOG2919|consen 221 KTLAVGSYGQ---RVGIYNDDGRR------PLQLLGGHGGGVTHLQWCEDGNKLFSGARK--DDKILCWDIRYSRDPVYA 289 (406)
T ss_pred cceeeecccc---eeeeEecCCCC------ceeeecccCCCeeeEEeccCcCeecccccC--CCeEEEEeehhccchhhh
Confidence 5777777655 67777764433 55555544 69999999999999998752 77899999985332 222
Q ss_pred --cc---ccceeeEEECCCCCEEEEEEccceeccccEEEEEecC--ce--eeeecccceeeeEEecCCCCCCChhhH
Q 005140 553 --AE---HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG--KL--LYRTLKDHFFQFLWRPRPPSFLTPEKE 620 (712)
Q Consensus 553 --~~---~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g--~~--~~~~~~~~i~~~~w~p~~~~l~s~~~d 620 (712)
.| ...-.-+...|+|++|++|+. ||.|++||+.+ +. +...+.+.++.++++|--+.+++++..
T Consensus 290 L~rhv~~TNQRI~FDld~~~~~LasG~t-----dG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 290 LERHVGDTNQRILFDLDPKGEILASGDT-----DGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred hhhhccCccceEEEecCCCCceeeccCC-----CccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 11 223335677899999999999 99999999974 42 333466889999999998888887754
No 159
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=8.8e-18 Score=171.74 Aligned_cols=238 Identities=13% Similarity=0.296 Sum_probs=188.6
Q ss_pred eEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCC
Q 005140 236 AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGG 315 (712)
Q Consensus 236 i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~ 315 (712)
+++|+.. .+ ..|...|.++..-..++.+++|+.+ ..+.+|.+..-..+..|.+|...+.
T Consensus 16 Lr~~~~~-~~----~~hsaav~~lk~~~s~r~~~~Gg~~----------~k~~L~~i~kp~~i~S~~~hespIe------ 74 (825)
T KOG0267|consen 16 LRVWDTR-EF----VAHSAAVGCLKIRKSSRSLVTGGED----------EKVNLWAIGKPNAITSLTGHESPIE------ 74 (825)
T ss_pred cccccch-hh----hhhhhhhceeeeeccceeeccCCCc----------eeeccccccCCchhheeeccCCcce------
Confidence 6677766 21 1122347777777778999999999 7888999877677778888887764
Q ss_pred cCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEE
Q 005140 316 VAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLV 394 (712)
Q Consensus 316 ~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~ 394 (712)
++.|++ +..+|+.+. +|+|++||+..++.+..+..|...+..+.|+|-+.+.+. ++.+...
T Consensus 75 -------Sl~f~~-~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~-----gStdtd~----- 136 (825)
T KOG0267|consen 75 -------SLTFDT-SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFAS-----GSTDTDL----- 136 (825)
T ss_pred -------eeecCc-chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEecc-----ccccccc-----
Confidence 799999 999999888 999999999999888877788888888888888877765 3344333
Q ss_pred ecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeC
Q 005140 395 QIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK 474 (712)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~ 474 (712)
.+|+++..+.. ....+|...+..+.|+|+
T Consensus 137 ------------------------------------------------~iwD~Rk~Gc~---~~~~s~~~vv~~l~lsP~ 165 (825)
T KOG0267|consen 137 ------------------------------------------------KIWDIRKKGCS---HTYKSHTRVVDVLRLSPD 165 (825)
T ss_pred ------------------------------------------------eehhhhccCce---eeecCCcceeEEEeecCC
Confidence 44554433322 334467888999999999
Q ss_pred CCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee
Q 005140 475 GHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT 552 (712)
Q Consensus 475 g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~ 552 (712)
|++++.++.|. .++|||+..+. .+..+..| .+..+.|+|..-.++.|+. |++++|||+++.+++..
T Consensus 166 Gr~v~~g~ed~---tvki~d~~agk------~~~ef~~~e~~v~sle~hp~e~Lla~Gs~---d~tv~f~dletfe~I~s 233 (825)
T KOG0267|consen 166 GRWVASGGEDN---TVKIWDLTAGK------LSKEFKSHEGKVQSLEFHPLEVLLAPGSS---DRTVRFWDLETFEVISS 233 (825)
T ss_pred CceeeccCCcc---eeeeecccccc------cccccccccccccccccCchhhhhccCCC---CceeeeeccceeEEeec
Confidence 99999999988 99999997665 56666654 6788889999988999988 99999999999998876
Q ss_pred c--cccceeeEEECCCCCEEEEEEc
Q 005140 553 A--EHFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 553 ~--~~~~v~~~~~spdg~~l~t~s~ 575 (712)
. ....|.+..|+|+|+.+++|..
T Consensus 234 ~~~~~~~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 234 GKPETDGVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred cCCccCCceeeeecCCceeeecCch
Confidence 4 3478999999999999988876
No 160
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.73 E-value=1.2e-15 Score=142.46 Aligned_cols=302 Identities=14% Similarity=0.191 Sum_probs=179.8
Q ss_pred CCceEEEEECCeeEEEecCCCCC--CCcccc--cCCCcccceEEEcCC----CcEEEEEecCc-eEEeecccCcceeeee
Q 005140 181 ARDQFVIRSGTDTEVLWNDARHL--KPEPVY--KRSYWTESFVQWSPL----GTYLATVHRQG-AAVWGGANTFNRLMRY 251 (712)
Q Consensus 181 ~~~~~~~~~~~~~~~~w~~~~~~--~~~~~~--~~~~~~v~~v~~Spd----g~~lat~~~~~-i~iw~~~~~~~~~~~~ 251 (712)
+..|.+++.|...+.++..+..+ .....+ ..|...-..++|+-| .-+||.++.-| |+|.|.. +.+....+
T Consensus 53 ~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~-~~~~~~~~ 131 (385)
T KOG1034|consen 53 DEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVV-SGQCSKNY 131 (385)
T ss_pred CCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecc-hhhhccce
Confidence 33466677777777788875554 222222 235556677888764 34788888888 6799998 77766555
Q ss_pred -cCCC-eeEEEecCCC-CEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeecc---CCCcccccCCCCCcCCCCcCeEE
Q 005140 252 -AHPQ-VKLIDFSPGE-KYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFK---GSADEFAVGGTGGVAGVSWPVFR 325 (712)
Q Consensus 252 -~~~~-v~~i~~Spdg-~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 325 (712)
.|.+ |..|.|.|+. ++|++++.| ..|++|+++++.++..|- +|.+.+. ++.
T Consensus 132 ~ghG~sINeik~~p~~~qlvls~SkD----------~svRlwnI~~~~Cv~VfGG~egHrdeVL-------------SvD 188 (385)
T KOG1034|consen 132 RGHGGSINEIKFHPDRPQLVLSASKD----------HSVRLWNIQTDVCVAVFGGVEGHRDEVL-------------SVD 188 (385)
T ss_pred eccCccchhhhcCCCCCcEEEEecCC----------ceEEEEeccCCeEEEEecccccccCcEE-------------EEE
Confidence 4554 9999999986 789999999 899999999999988775 4666653 799
Q ss_pred ecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceee
Q 005140 326 WGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ 404 (712)
Q Consensus 326 ~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (712)
|++ +|.+|++++ |.+|.+|+++..+...... .++.|+|++...-+ -.....+..|......
T Consensus 189 ~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE------~s~~~~~~~t~~pf-------pt~~~~fp~fst~diH---- 250 (385)
T KOG1034|consen 189 FSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLE------LSITYSPNKTTRPF-------PTPKTHFPDFSTTDIH---- 250 (385)
T ss_pred EcC-CCCeeeccCCcceEEEEecChhHHhhhhh------hhcccCCCCccCcC-------Cccccccccccccccc----
Confidence 999 999999999 9999999998433221110 11333443322111 0000000000000000
Q ss_pred eeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEec-----------CCc--ceeEEEecCCCCceEEEEE
Q 005140 405 KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKE-----------RDI--PIEVLELDNKNDKIIAFAW 471 (712)
Q Consensus 405 ~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~-----------~~~--~~~~~~l~~h~~~v~~~~~ 471 (712)
-..++++ .|- |.++++.+..+. +..|.-.. ... ....+.++...-...-++|
T Consensus 251 --rnyVDCv--rw~--gd~ilSkscena---------I~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~ 315 (385)
T KOG1034|consen 251 --RNYVDCV--RWF--GDFILSKSCENA---------IVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAF 315 (385)
T ss_pred --cchHHHH--HHH--hhheeecccCce---------EEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEee
Confidence 0000000 000 111111111111 11111100 000 0000111111112234677
Q ss_pred eeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 472 EPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 472 sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
.|-++.||.+...| .|.+||++.........+.+...+..|...+||-||..|+..+. ++.|.-||.-
T Consensus 316 d~~~~~la~gnq~g---~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcd---d~~Vwrwdrv 383 (385)
T KOG1034|consen 316 DPWQKMLALGNQSG---KVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCD---DGTVWRWDRV 383 (385)
T ss_pred cHHHHHHhhccCCC---cEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeC---CCcEEEEEee
Confidence 88899999999988 99999998655432233444555667899999999999999988 9999988853
No 161
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.9e-15 Score=142.79 Aligned_cols=294 Identities=18% Similarity=0.319 Sum_probs=174.6
Q ss_pred eEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCC-CcEEEEEecCceEEeecccCcc--e-----------ee
Q 005140 184 QFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPL-GTYLATVHRQGAAVWGGANTFN--R-----------LM 249 (712)
Q Consensus 184 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spd-g~~lat~~~~~i~iw~~~~~~~--~-----------~~ 249 (712)
.|++...|.++.+++... ..+...-...+..|+|++|-|. ++-||.++..||.||...-+.. + +.
T Consensus 112 ~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl 190 (445)
T KOG2139|consen 112 AFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVL 190 (445)
T ss_pred hhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhhe
Confidence 467778888998998732 2222222344578999999996 4679999999999997651111 1 11
Q ss_pred ee-cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecC
Q 005140 250 RY-AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGG 328 (712)
Q Consensus 250 ~~-~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 328 (712)
+. .|..|++++|.+||..|++++.+. ..|.|||..+|..+.......+.++ .+.|||
T Consensus 191 ~~pgh~pVtsmqwn~dgt~l~tAS~gs---------ssi~iWdpdtg~~~pL~~~glgg~s-------------lLkwSP 248 (445)
T KOG2139|consen 191 QDPGHNPVTSMQWNEDGTILVTASFGS---------SSIMIWDPDTGQKIPLIPKGLGGFS-------------LLKWSP 248 (445)
T ss_pred eCCCCceeeEEEEcCCCCEEeecccCc---------ceEEEEcCCCCCcccccccCCCcee-------------eEEEcC
Confidence 11 233499999999999999999772 6899999999887655422222221 689999
Q ss_pred CCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeee
Q 005140 329 GKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL 407 (712)
Q Consensus 329 ~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 407 (712)
||.+|..+. |+..++|+.........-....+.|+..+|+|+|++|++.+. +..+++....+.......
T Consensus 249 -dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s------gsp~lysl~f~~~~~~~~--- 318 (445)
T KOG2139|consen 249 -DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS------GSPRLYSLTFDGEDSVFL--- 318 (445)
T ss_pred -CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc------CCceEEEEeecCCCcccc---
Confidence 999988888 999999965533222222234447999999999999987422 223343333222111000
Q ss_pred eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCC-
Q 005140 408 FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSP- 486 (712)
Q Consensus 408 ~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~- 486 (712)
.+.+..- .+.+.++.+-.+......+ .+.+.+++|.|.|.++|+....++
T Consensus 319 ----------~~~~~k~----------------~lliaDL~e~ti~ag~~l~---cgeaq~lawDpsGeyLav~fKg~~~ 369 (445)
T KOG2139|consen 319 ----------RPQSIKR----------------VLLIADLQEVTICAGQRLC---CGEAQCLAWDPSGEYLAVIFKGQSF 369 (445)
T ss_pred ----------Cccccee----------------eeeeccchhhhhhcCcccc---cCccceeeECCCCCEEEEEEcCCch
Confidence 0111100 0122233221111111112 578899999999999999877543
Q ss_pred ----CCeEEEEEeecccccCceeEE--EEeCCCceeEEEEcc---CCCeEEEEeccCCCceEEEEECC
Q 005140 487 ----RPDISFYSMRTAQHAGRVSKL--TTLKGKQANALFWSP---SGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 487 ----~~~v~i~d~~~~~~~~~~~~~--~~~~~~~v~~l~~sp---dg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
+..|.+||.+.... +... ..+.+..-..++|+| +|++|.++=. .|.+.-|++.
T Consensus 370 v~~~k~~i~~fdtr~sp~---vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWs---TGriq~ypl~ 431 (445)
T KOG2139|consen 370 VLLCKLHISRFDTRKSPP---VELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWS---TGRIQRYPLT 431 (445)
T ss_pred hhhhhhhhhhhcccccCc---eEEEecccccCCCCceEEeeecccCCcEEEEEec---cCceEeeeeE
Confidence 22456666543211 1111 111222334566665 4555555544 5666666554
No 162
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.73 E-value=1.1e-15 Score=148.65 Aligned_cols=292 Identities=11% Similarity=0.166 Sum_probs=198.4
Q ss_pred eeecCCCeeEEEecCCCC--EEEEEcCCCCCCCcCCCccEEEEEEccCCc----eeeeccCCCcccccCCCCCcCCCCcC
Q 005140 249 MRYAHPQVKLIDFSPGEK--YLVTYSSHEPSNPRDANRVVINIFDVRTGK----VMRDFKGSADEFAVGGTGGVAGVSWP 322 (712)
Q Consensus 249 ~~~~~~~v~~i~~Spdg~--~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (712)
.+.....|++++|+|... .+|+|... |+|-+||+.+.+ .+..|..|...+.
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~----------G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs------------- 238 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKG----------GQVGLWNFGTQEKDKDGVYLFTPHSGPVS------------- 238 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCC----------CcEEEEecCCCCCccCceEEeccCCcccc-------------
Confidence 334455699999999865 66777777 999999995322 3556677766654
Q ss_pred eEEecCCCCCEEEEec-CCeEEEEEcCCceecccccc--cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc
Q 005140 323 VFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSL--KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 399 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 399 (712)
++.|+|.+...+.+.+ ||+|++-|+++...-..... ....+.++.|+.....+++ ++..+.+.+|+....
T Consensus 239 ~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~-------~~~~G~f~~iD~R~~ 311 (498)
T KOG4328|consen 239 GLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLF-------GDNVGNFNVIDLRTD 311 (498)
T ss_pred ceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEE-------eecccceEEEEeecC
Confidence 6899994334555555 99999999986543222222 2234677888888777776 333334444444332
Q ss_pred c-ceeeeeeeeecceeEEECcCCC-EEEEEEcccccccccccccEEEEEEecCCcce-eEEEecCCCCceEEEEEeeCCC
Q 005140 400 E-ELRQKNLFSVSDCKMYWQSSGD-YLAVKVDRYTKTKKSTYTGFELFRIKERDIPI-EVLELDNKNDKIIAFAWEPKGH 476 (712)
Q Consensus 400 ~-~~~~~~~~~~~~~~~~~s~~g~-~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~l~~h~~~v~~~~~sp~g~ 476 (712)
. ......++...++.++++|... +|++++.|.+ ..||+++.-.... ..+....|...|.+..|||.|-
T Consensus 312 ~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T---------~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g 382 (498)
T KOG4328|consen 312 GSEYENLRLHKKKITSVALNPVCPWFLATASLDQT---------AKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG 382 (498)
T ss_pred CccchhhhhhhcccceeecCCCCchheeecccCcc---------eeeeehhhhcCCCCcceecccccceeeeeEEcCCCC
Confidence 2 2333333444666778898765 6778888877 7899998643322 2456668999999999999888
Q ss_pred EEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-----CC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCccee
Q 005140 477 RFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-----GK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET 549 (712)
Q Consensus 477 ~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-----~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~ 549 (712)
.|++.+.|. .|+|||..--. ....+...+. +. ..-...|.|+-.+++++.+ -..|-|||-..++.
T Consensus 383 tl~TT~~D~---~IRv~dss~~s--a~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~---~r~IDv~~~~~~q~ 454 (498)
T KOG4328|consen 383 TLLTTCQDN---EIRVFDSSCIS--AKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRY---PRPIDVFDGNGGQM 454 (498)
T ss_pred ceEeeccCC---ceEEeeccccc--ccCCccceeeccCcccccccchhheeCCCccEEEEecc---CcceeEEcCCCCEE
Confidence 899999998 99999984100 1111222222 11 2345789999999999988 78899999999887
Q ss_pred eeecccc---cee-eEEECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 550 MATAEHF---MAT-DVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 550 ~~~~~~~---~v~-~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
+...|.. .|. -..|+|-+..+++|+.+ .|.|+||.-.+
T Consensus 455 v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s----~Gki~vft~k~ 496 (498)
T KOG4328|consen 455 VCELHDPESSTIPSVNEFHPMRDTLAAGGNS----SGKIYVFTNKK 496 (498)
T ss_pred eeeccCccccccccceeecccccceeccCCc----cceEEEEecCC
Confidence 7775553 333 36899998877777764 67788886543
No 163
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.72 E-value=6.7e-16 Score=155.38 Aligned_cols=156 Identities=23% Similarity=0.383 Sum_probs=118.1
Q ss_pred cceeEEECc-CCCEEEEEEcccccccccccccEEEEEEecCCcceeE----EEecCCCCceEEEEEee-CCCEEEEEEcC
Q 005140 411 SDCKMYWQS-SGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEV----LELDNKNDKIIAFAWEP-KGHRFAVIHGD 484 (712)
Q Consensus 411 ~~~~~~~s~-~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~----~~l~~h~~~v~~~~~sp-~g~~l~~~~~d 484 (712)
....++|.| |...|+++.+++. +.||++...+.+... ..++.|...|+++.|+| -.+.|++++.|
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~---------i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd 699 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQ---------INLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYD 699 (1012)
T ss_pred eeeecccCCCChHHeeecccCce---------EEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhcc
Confidence 455778998 5678999999887 899999876654322 34678999999999999 56788899999
Q ss_pred CCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeee-eccc---cce
Q 005140 485 SPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA-TAEH---FMA 558 (712)
Q Consensus 485 ~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~-~~~~---~~v 558 (712)
. +|++||+.++. ....+.+| +|..++|||+|+.+++.+. ||+|++|+..+++.-. .+.. ..-
T Consensus 700 ~---Ti~lWDl~~~~------~~~~l~gHtdqIf~~AWSpdGr~~AtVcK---Dg~~rVy~Prs~e~pv~Eg~gpvgtRg 767 (1012)
T KOG1445|consen 700 S---TIELWDLANAK------LYSRLVGHTDQIFGIAWSPDGRRIATVCK---DGTLRVYEPRSREQPVYEGKGPVGTRG 767 (1012)
T ss_pred c---eeeeeehhhhh------hhheeccCcCceeEEEECCCCcceeeeec---CceEEEeCCCCCCCccccCCCCccCcc
Confidence 8 99999998765 23344444 7999999999999999999 9999999988665432 2211 334
Q ss_pred eeEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 559 TDVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 559 ~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
..+.|--||++|++.+.+ ......+.+|+
T Consensus 768 ARi~wacdgr~viv~Gfd-k~SeRQv~~Y~ 796 (1012)
T KOG1445|consen 768 ARILWACDGRIVIVVGFD-KSSERQVQMYD 796 (1012)
T ss_pred eeEEEEecCcEEEEeccc-ccchhhhhhhh
Confidence 468899999998887753 11234555554
No 164
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.72 E-value=4.9e-16 Score=151.50 Aligned_cols=245 Identities=13% Similarity=0.220 Sum_probs=164.4
Q ss_pred CCCCceEEEEECCeeEEEecCCC---------CCCCcccccCCCcccceEEEcCCC-cEEEEEecCc-eEEeecccCcc-
Q 005140 179 EKARDQFVIRSGTDTEVLWNDAR---------HLKPEPVYKRSYWTESFVQWSPLG-TYLATVHRQG-AAVWGGANTFN- 246 (712)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~w~~~~---------~~~~~~~~~~~~~~v~~v~~Spdg-~~lat~~~~~-i~iw~~~~~~~- 246 (712)
|.....++.....+-+.+|+..+ ...|...+.+|...-..++|++.- -+|++++.++ |.+||+.....
T Consensus 134 PQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~ 213 (422)
T KOG0264|consen 134 PQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKE 213 (422)
T ss_pred CCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccC
Confidence 33334445555666677888632 223445789999888899999853 3577777777 88999873222
Q ss_pred -----eeeee-cCC-CeeEEEecCCC-CEEEEEcCCCCCCCcCCCccEEEEEEcc--CCceeeeccCCCcccccCCCCCc
Q 005140 247 -----RLMRY-AHP-QVKLIDFSPGE-KYLVTYSSHEPSNPRDANRVVINIFDVR--TGKVMRDFKGSADEFAVGGTGGV 316 (712)
Q Consensus 247 -----~~~~~-~~~-~v~~i~~Spdg-~~l~t~s~d~~~~~~~~~~~~I~iwd~~--~g~~~~~~~~~~~~~~~~~~~~~ 316 (712)
....+ .|. .|..++|+|-. ..+++++.| +.+.|||++ +.+..+...+|...+.
T Consensus 214 ~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd----------~~L~iwD~R~~~~~~~~~~~ah~~~vn------- 276 (422)
T KOG0264|consen 214 DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDD----------GKLMIWDTRSNTSKPSHSVKAHSAEVN------- 276 (422)
T ss_pred CccccceEEeecCCcceehhhccccchhhheeecCC----------CeEEEEEcCCCCCCCcccccccCCcee-------
Confidence 11122 244 49999999954 567788888 999999999 4555666677776663
Q ss_pred CCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCce-ecccccccccCeeeEEECCCCC-eEEEEeecCCCCCCCeEEEE
Q 005140 317 AGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT-LIDKKSLKVENVMDFSWSPTDP-IISLFVPELGGGNQPARVSL 393 (712)
Q Consensus 317 ~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~sp~~~-~la~~~~~~~~~~~~~~i~~ 393 (712)
+++|+|.++..||+++ |++|.+||+++.. .+.....|.+.|.++.|||... .||+ ++.|+...||.
T Consensus 277 ------~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLAS-----Sg~D~rl~vWD 345 (422)
T KOG0264|consen 277 ------CVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLAS-----SGTDRRLNVWD 345 (422)
T ss_pred ------EEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEe-----cccCCcEEEEe
Confidence 7999996777889998 9999999999765 3444556777899999999864 5555 55666655554
Q ss_pred EecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee
Q 005140 394 VQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP 473 (712)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp 473 (712)
+.--..+.. + .-.+.+.|...+.-.||...|..+.|+|
T Consensus 346 ls~ig~eq~----------------~--------------------------eda~dgppEllF~HgGH~~kV~DfsWnp 383 (422)
T KOG0264|consen 346 LSRIGEEQS----------------P--------------------------EDAEDGPPELLFIHGGHTAKVSDFSWNP 383 (422)
T ss_pred ccccccccC----------------h--------------------------hhhccCCcceeEEecCcccccccccCCC
Confidence 432111100 0 0001111212233458999999999999
Q ss_pred CCCEEEE-EEcCCCCCeEEEEEee
Q 005140 474 KGHRFAV-IHGDSPRPDISFYSMR 496 (712)
Q Consensus 474 ~g~~l~~-~~~d~~~~~v~i~d~~ 496 (712)
+..+.++ ++.|+ .+.||.+.
T Consensus 384 ~ePW~I~SvaeDN---~LqIW~~s 404 (422)
T KOG0264|consen 384 NEPWTIASVAEDN---ILQIWQMA 404 (422)
T ss_pred CCCeEEEEecCCc---eEEEeecc
Confidence 8776554 45566 99999985
No 165
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.72 E-value=6.7e-16 Score=151.29 Aligned_cols=281 Identities=12% Similarity=0.224 Sum_probs=187.8
Q ss_pred EEEEEecCceEEeecccCcceeeee----cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc-----e
Q 005140 227 YLATVHRQGAAVWGGANTFNRLMRY----AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK-----V 297 (712)
Q Consensus 227 ~lat~~~~~i~iw~~~~~~~~~~~~----~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~-----~ 297 (712)
+++..+.+.++|||.. .....-.+ ..+++.++.|+.... |++++.. +...|++|. ..|+ .
T Consensus 5 l~~aS~gd~~kl~D~s-~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~--------gdk~~~~~~-K~g~~~~Vp~ 73 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFS-DLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMA--------GDKVMRIKE-KDGKTPEVPR 73 (673)
T ss_pred eeeeccCCceEEeecc-cccCccccccCCCCCcceeeeccccce-EEEeecC--------CceeEEEec-ccCCCCccce
Confidence 5666677889999987 55444333 234599999998764 5544433 116888997 4554 1
Q ss_pred eeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEE
Q 005140 298 MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIIS 376 (712)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la 376 (712)
++...+.. .. |+.... ...|+++++ .+.|+|||+....+......|...|+++.++-.+.+||
T Consensus 74 ~~k~~gd~-~~--------------Cv~~~s-~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiA 137 (673)
T KOG4378|consen 74 VRKLTGDN-AF--------------CVACAS-QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIA 137 (673)
T ss_pred eeccccch-HH--------------HHhhhh-cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeE
Confidence 22222221 11 344444 456999999 99999999995555555556778899999999999999
Q ss_pred EEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeE
Q 005140 377 LFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEV 456 (712)
Q Consensus 377 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 456 (712)
. ++.++.+.| ..+.++... ..
T Consensus 138 s-----vs~gGdiii--h~~~t~~~t----------------------------------------------------t~ 158 (673)
T KOG4378|consen 138 S-----VSDGGDIII--HGTKTKQKT----------------------------------------------------TT 158 (673)
T ss_pred E-----eccCCcEEE--EecccCccc----------------------------------------------------cc
Confidence 8 444443332 111111000 00
Q ss_pred EEecCCCCceEEEEEeeCCCEEEEEEc-CCCCCeEEEEEeecccccCceeEEEEe---CCCceeEEEEccCC-CeEEEEe
Q 005140 457 LELDNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDISFYSMRTAQHAGRVSKLTTL---KGKQANALFWSPSG-RFIVLAG 531 (712)
Q Consensus 457 ~~l~~h~~~v~~~~~sp~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~---~~~~v~~l~~spdg-~~l~~~~ 531 (712)
+.. +....|.-+.++|..+.++.... +| .|.+||+.... ++... +..+...++|||.. ..|++.+
T Consensus 159 f~~-~sgqsvRll~ys~skr~lL~~asd~G---~VtlwDv~g~s------p~~~~~~~HsAP~~gicfspsne~l~vsVG 228 (673)
T KOG4378|consen 159 FTI-DSGQSVRLLRYSPSKRFLLSIASDKG---AVTLWDVQGMS------PIFHASEAHSAPCRGICFSPSNEALLVSVG 228 (673)
T ss_pred eec-CCCCeEEEeecccccceeeEeeccCC---eEEEEeccCCC------cccchhhhccCCcCcceecCCccceEEEec
Confidence 111 11334556888988776666555 56 99999997654 33332 23477889999965 4667777
Q ss_pred ccCCCceEEEEECCcceeeee-ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCc--ee--eeecccceeeeE
Q 005140 532 LKGFNGQLEFYNVDELETMAT-AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK--LL--YRTLKDHFFQFL 606 (712)
Q Consensus 532 ~~~~dg~v~iwd~~~~~~~~~-~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~--~~--~~~~~~~i~~~~ 606 (712)
. |..|.+||....+.... .-..+.+.++|+++|.+|+.|+. .|.+..||+.+. .+ ...|...|++++
T Consensus 229 ~---Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s-----~G~~i~YD~R~~k~Pv~v~sah~~sVt~va 300 (673)
T KOG4378|consen 229 Y---DKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNS-----KGELIAYDMRSTKAPVAVRSAHDASVTRVA 300 (673)
T ss_pred c---cceEEEeecccccccceeeecCCcceeeecCCceEEEeecC-----CceEEEEecccCCCCceEeeecccceeEEE
Confidence 7 99999999996665544 23467889999999999999999 899999999864 22 234677899999
Q ss_pred EecCC
Q 005140 607 WRPRP 611 (712)
Q Consensus 607 w~p~~ 611 (712)
|.|.+
T Consensus 301 fq~s~ 305 (673)
T KOG4378|consen 301 FQPSP 305 (673)
T ss_pred eeecc
Confidence 99986
No 166
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.72 E-value=5.5e-15 Score=145.97 Aligned_cols=363 Identities=16% Similarity=0.280 Sum_probs=237.6
Q ss_pred hccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecC----------------ceEE
Q 005140 175 WLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQ----------------GAAV 238 (712)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~----------------~i~i 238 (712)
...+|.|+ |++......+.+|..+... ....+. | ..|..+.|||.|+||.|-+.. .+.+
T Consensus 38 ~~~SP~G~--~l~~~~~~~V~~~~g~~~~-~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~v 112 (561)
T COG5354 38 VSESPLGT--YLFSEHAAGVECWGGPSKA-KLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFV 112 (561)
T ss_pred eeecCcch--heehhhccceEEccccchh-heeeee-c-CCceecccCcccceeeeeccCCccChhhccCCccccCceeE
Confidence 34566666 4455556667799885444 222222 2 467889999999999996633 3569
Q ss_pred eecccCcceeeeecCCC-----eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCC
Q 005140 239 WGGANTFNRLMRYAHPQ-----VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGT 313 (712)
Q Consensus 239 w~~~~~~~~~~~~~~~~-----v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~ 313 (712)
||.. ++..+..+.... -.-+.||-+.+|+|-...+ .+.|+++ ++... ....+...
T Consensus 113 wd~~-sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~-----------sl~i~e~-t~n~~-~~p~~~lr------ 172 (561)
T COG5354 113 WDIA-SGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGS-----------SLYIHEI-TDNIE-EHPFKNLR------ 172 (561)
T ss_pred Eecc-CceeEeeccccCCcccccceeeeeecchhhhhhccC-----------eEEEEec-CCccc-cCchhhcc------
Confidence 9999 888888875332 3378999999999877655 6899997 44321 11111110
Q ss_pred CCcCCCCcCeEEecCC-CCCEEEEec------CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCC
Q 005140 314 GGVAGVSWPVFRWGGG-KDKYFAKLG------KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGN 386 (712)
Q Consensus 314 ~~~~~~~~~~~~~s~~-dg~~la~~~------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~ 386 (712)
+.|+ ..+.|||. ++.-||+.. ...+++|.++.+..+..+.+-.-.-..+.|.+.|++|++.+......+
T Consensus 173 --~~gi--~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksn 248 (561)
T COG5354 173 --PVGI--LDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSN 248 (561)
T ss_pred --ccce--eeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecc
Confidence 1121 16888982 234566554 678999999977777655543333456899999999988764432122
Q ss_pred ----CCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCC
Q 005140 387 ----QPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNK 462 (712)
Q Consensus 387 ----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h 462 (712)
+...++++++..+..-... ........+.|+|.++.+++.+.-... .+.+|+++.+ +.+...
T Consensus 249 KsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa-------~~s~~~lr~N------l~~~~P 314 (561)
T COG5354 249 KSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPA-------SVSVFDLRGN------LRFYFP 314 (561)
T ss_pred cceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEeccccc-------ceeecccccc------eEEecC
Confidence 2245777777643322221 334556678999999988887643221 1345555432 112122
Q ss_pred CCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccC---CCceE
Q 005140 463 NDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKG---FNGQL 539 (712)
Q Consensus 463 ~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~---~dg~v 539 (712)
...-+.+.|||.++++++++-+....++.+|+... +...+..+.+....-+.|||||.++.++..+. .|..+
T Consensus 315 e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~-----rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i 389 (561)
T COG5354 315 EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG-----RFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSI 389 (561)
T ss_pred CcccccccccCcccEEEEecCCccccceEEeccCC-----ceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcce
Confidence 44556688999999999988765555899999743 34456566666677789999999998876432 58889
Q ss_pred EEEECCcceeeeeccccceeeEEECCCCCEEEEEEcc-ceeccccEEEEEecC
Q 005140 540 EFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTS-VHEMENGFNIWSFNG 591 (712)
Q Consensus 540 ~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~-~~~~d~~v~iw~~~g 591 (712)
.||++...... ..+.+.|.|.|++..+.+.. .|...++.++.++.|
T Consensus 390 ~l~~v~g~~~f------el~~~~W~p~~~~~ttsSs~~~h~~~~~~~~~k~~G 436 (561)
T COG5354 390 KLWDVYGAKVF------ELTNITWDPSGQYVTTSSSCPKHKVEHGYKIFKIAG 436 (561)
T ss_pred EEEEecCchhh------hhhhccccCCcccceeeccCCCCccccccccccccc
Confidence 99998844332 67789999999998888775 444455566665544
No 167
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=3.5e-15 Score=158.29 Aligned_cols=241 Identities=13% Similarity=0.192 Sum_probs=152.1
Q ss_pred cEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec----CCeEEEEEcCCceecccccccc
Q 005140 285 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG----KNMISVYETESFTLIDKKSLKV 360 (712)
Q Consensus 285 ~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~----d~~i~iwd~~~~~~~~~~~~~~ 360 (712)
..|.+||...+. .+.+..+..... .++||| ||+.|+..+ +..|.+|++.+++..... ...
T Consensus 179 ~~l~~~d~dg~~-~~~lt~~~~~~~-------------~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~ 242 (429)
T PRK03629 179 YELRVSDYDGYN-QFVVHRSPQPLM-------------SPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFP 242 (429)
T ss_pred eeEEEEcCCCCC-CEEeecCCCcee-------------eeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCC
Confidence 579999975443 333433332221 689999 999998764 457889998876532111 111
Q ss_pred cCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccc
Q 005140 361 ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 440 (712)
Q Consensus 361 ~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~ 440 (712)
..+..+.|||||+.|++.. ..++...||++++.+..
T Consensus 243 ~~~~~~~~SPDG~~La~~~----~~~g~~~I~~~d~~tg~---------------------------------------- 278 (429)
T PRK03629 243 RHNGAPAFSPDGSKLAFAL----SKTGSLNLYVMDLASGQ---------------------------------------- 278 (429)
T ss_pred CCcCCeEECCCCCEEEEEE----cCCCCcEEEEEECCCCC----------------------------------------
Confidence 2345678888888887631 12333345555443211
Q ss_pred cEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEE
Q 005140 441 GFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFW 520 (712)
Q Consensus 441 ~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~ 520 (712)
. ..+..+...+..++|+|||+.|++++..+....|+++++.++. ...+ +..+.....+.|
T Consensus 279 -------------~--~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~----~~~l-t~~~~~~~~~~~ 338 (429)
T PRK03629 279 -------------I--RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA----PQRI-TWEGSQNQDADV 338 (429)
T ss_pred -------------E--EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC----eEEe-ecCCCCccCEEE
Confidence 0 1111223456678999999999988875433355555664432 1222 223344567999
Q ss_pred ccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEccceeccc---cEEEEEecCceeeee
Q 005140 521 SPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMEN---GFNIWSFNGKLLYRT 597 (712)
Q Consensus 521 spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~---~v~iw~~~g~~~~~~ 597 (712)
||||++|++.+.......|++||+.+++..............|||||++|++++. ++ .+.+++++|......
T Consensus 339 SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~-----~~~~~~l~~~~~~G~~~~~l 413 (429)
T PRK03629 339 SSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSS-----QGMGSVLNLVSTDGRFKARL 413 (429)
T ss_pred CCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEc-----CCCceEEEEEECCCCCeEEC
Confidence 9999999887653224578899998776443222233457899999999999998 44 367788888766555
Q ss_pred --cccceeeeEEecC
Q 005140 598 --LKDHFFQFLWRPR 610 (712)
Q Consensus 598 --~~~~i~~~~w~p~ 610 (712)
+.+.+...+|+|.
T Consensus 414 ~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 414 PATDGQVKFPAWSPY 428 (429)
T ss_pred ccCCCCcCCcccCCC
Confidence 4567889999984
No 168
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.71 E-value=2.1e-15 Score=153.94 Aligned_cols=254 Identities=13% Similarity=0.169 Sum_probs=191.8
Q ss_pred EEEEECCeeEEEecCCC-CCCCcccccCCCcccce-EEEcC-CCcEEEEEecCc-eEEeecccCcceeeee-cCC-CeeE
Q 005140 185 FVIRSGTDTEVLWNDAR-HLKPEPVYKRSYWTESF-VQWSP-LGTYLATVHRQG-AAVWGGANTFNRLMRY-AHP-QVKL 258 (712)
Q Consensus 185 ~~~~~~~~~~~~w~~~~-~~~~~~~~~~~~~~v~~-v~~Sp-dg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~~-~v~~ 258 (712)
.+..+.++++.+|.-.. ..-....+.+|..-+.+ +++-+ ++-.|++|+.|. +.+|... +..++..+ .|. .|.+
T Consensus 28 i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~-~~~P~~~LkgH~snVC~ 106 (745)
T KOG0301|consen 28 IISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLS-QAEPLYTLKGHKSNVCS 106 (745)
T ss_pred EeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecC-CCCchhhhhccccceee
Confidence 33444588888998722 22333456777766655 77775 555699999999 7799998 77777666 355 5999
Q ss_pred EEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec
Q 005140 259 IDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG 338 (712)
Q Consensus 259 i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~ 338 (712)
++.-.++. |++||.| .++++|- .+++...+.+|...+ |. +..-| .+. +++++
T Consensus 107 ls~~~~~~-~iSgSWD----------~TakvW~--~~~l~~~l~gH~asV------------WA-v~~l~-e~~-~vTgs 158 (745)
T KOG0301|consen 107 LSIGEDGT-LISGSWD----------STAKVWR--IGELVYSLQGHTASV------------WA-VASLP-ENT-YVTGS 158 (745)
T ss_pred eecCCcCc-eEecccc----------cceEEec--chhhhcccCCcchhe------------ee-eeecC-CCc-EEecc
Confidence 99888888 9999999 9999997 577778899998887 84 66667 664 45555
Q ss_pred -CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEE
Q 005140 339 -KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYW 417 (712)
Q Consensus 339 -d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (712)
|.+|++|.- ++.+.....|.+.|+.+++-|++.+|. ++.|+.++.|
T Consensus 159 aDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flS------csNDg~Ir~w------------------------- 205 (745)
T KOG0301|consen 159 ADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLS------CSNDGSIRLW------------------------- 205 (745)
T ss_pred CcceeeeccC--CchhhhhccchhheeeeEEecCCCeEe------ecCCceEEEE-------------------------
Confidence 999999986 567777788999999999999888777 4455555533
Q ss_pred CcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeec
Q 005140 418 QSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRT 497 (712)
Q Consensus 418 s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~ 497 (712)
+-+|..| .++.+|...+.+++..+++..+++++.|+ +++||+..
T Consensus 206 ~~~ge~l--------------------------------~~~~ghtn~vYsis~~~~~~~Ivs~gEDr---tlriW~~~- 249 (745)
T KOG0301|consen 206 DLDGEVL--------------------------------LEMHGHTNFVYSISMALSDGLIVSTGEDR---TLRIWKKD- 249 (745)
T ss_pred eccCcee--------------------------------eeeeccceEEEEEEecCCCCeEEEecCCc---eEEEeecC-
Confidence 2223222 34558888999999888899999999999 99999974
Q ss_pred ccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 498 AQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 498 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
.|....++++..+.++.+-++|..++.+ . ||.|+||..+
T Consensus 250 -----e~~q~I~lPttsiWsa~~L~NgDIvvg~-S---DG~VrVfT~~ 288 (745)
T KOG0301|consen 250 -----ECVQVITLPTTSIWSAKVLLNGDIVVGG-S---DGRVRVFTVD 288 (745)
T ss_pred -----ceEEEEecCccceEEEEEeeCCCEEEec-c---CceEEEEEec
Confidence 3445666777789999999999765544 4 9999999876
No 169
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.70 E-value=7.5e-14 Score=144.12 Aligned_cols=274 Identities=11% Similarity=0.055 Sum_probs=167.3
Q ss_pred eEEEEECCeeEEEecCCCCCC--CcccccCCCcccceEEEcCCCcEEEEEec-Cc-eEEeecccCcc--eeeeecCC-Ce
Q 005140 184 QFVIRSGTDTEVLWNDARHLK--PEPVYKRSYWTESFVQWSPLGTYLATVHR-QG-AAVWGGANTFN--RLMRYAHP-QV 256 (712)
Q Consensus 184 ~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~~~~v~~v~~Spdg~~lat~~~-~~-i~iw~~~~~~~--~~~~~~~~-~v 256 (712)
.|++...++.+.+|+....+. ....++ +......+++||+|++|+.++. ++ |.+|+...++. .+...... ..
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p 82 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSP 82 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCc
Confidence 356666678888998842222 222332 2345678999999999877754 33 78898862222 23333333 47
Q ss_pred eEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC-Cc---eeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCC
Q 005140 257 KLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT-GK---VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK 332 (712)
Q Consensus 257 ~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~-g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~ 332 (712)
..++|+|+|++|++++... +.|.+|++.+ |. .+..+.+..... .++++| +++
T Consensus 83 ~~i~~~~~g~~l~v~~~~~---------~~v~v~~~~~~g~~~~~~~~~~~~~~~~--------------~~~~~p-~g~ 138 (330)
T PRK11028 83 THISTDHQGRFLFSASYNA---------NCVSVSPLDKDGIPVAPIQIIEGLEGCH--------------SANIDP-DNR 138 (330)
T ss_pred eEEEECCCCCEEEEEEcCC---------CeEEEEEECCCCCCCCceeeccCCCccc--------------EeEeCC-CCC
Confidence 7899999999999887531 7899999863 32 222222222222 578999 999
Q ss_pred EEEEec--CCeEEEEEcCCceeccc---c--cc-cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc--ce
Q 005140 333 YFAKLG--KNMISVYETESFTLIDK---K--SL-KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE--EL 402 (712)
Q Consensus 333 ~la~~~--d~~i~iwd~~~~~~~~~---~--~~-~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~--~~ 402 (712)
+++.+. ++.|.+|++.+...+.. . .. ...+...+.|+|+|+++++. ...++.+.+|.++..+.. .+
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~----~~~~~~v~v~~~~~~~~~~~~~ 214 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCV----NELNSSVDVWQLKDPHGEIECV 214 (330)
T ss_pred EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEE----ecCCCEEEEEEEeCCCCCEEEE
Confidence 886665 79999999986432211 0 11 12346789999999998772 113455555555432222 12
Q ss_pred eeeeeee------ecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCC
Q 005140 403 RQKNLFS------VSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGH 476 (712)
Q Consensus 403 ~~~~~~~------~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~ 476 (712)
....... .....+.++|+|++++++.... ..+.+|++...+.....+....-......++++|+|+
T Consensus 215 ~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~--------~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~ 286 (330)
T PRK11028 215 QTLDMMPADFSDTRWAADIHITPDGRHLYACDRTA--------SLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGK 286 (330)
T ss_pred EEEecCCCcCCCCccceeEEECCCCCEEEEecCCC--------CeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCC
Confidence 1111110 1122467899999999874321 1278888876543222121101023456789999999
Q ss_pred EEEEEEc-CCCCCeEEEEEeec
Q 005140 477 RFAVIHG-DSPRPDISFYSMRT 497 (712)
Q Consensus 477 ~l~~~~~-d~~~~~v~i~d~~~ 497 (712)
+|+++.. ++ +|.+|+++.
T Consensus 287 ~l~va~~~~~---~v~v~~~~~ 305 (330)
T PRK11028 287 YLIAAGQKSH---HISVYEIDG 305 (330)
T ss_pred EEEEEEccCC---cEEEEEEcC
Confidence 9999876 45 899999854
No 170
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.70 E-value=4.8e-14 Score=145.55 Aligned_cols=271 Identities=12% Similarity=0.160 Sum_probs=163.4
Q ss_pred EecCceEEeecccCc--ceeeeecC-CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc-CCce--eeeccCC
Q 005140 231 VHRQGAAVWGGANTF--NRLMRYAH-PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR-TGKV--MRDFKGS 304 (712)
Q Consensus 231 ~~~~~i~iw~~~~~~--~~~~~~~~-~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~-~g~~--~~~~~~~ 304 (712)
....+|.+|++.+++ ..+.++.+ .....+++||++++|++++... +.|.+|++. +|.. +......
T Consensus 9 ~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~---------~~i~~~~~~~~g~l~~~~~~~~~ 79 (330)
T PRK11028 9 PESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPE---------FRVLSYRIADDGALTFAAESPLP 79 (330)
T ss_pred CCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCC---------CcEEEEEECCCCceEEeeeecCC
Confidence 334449999986223 34455544 3488999999999997765431 678899986 3432 2222211
Q ss_pred CcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCceeccc-cc--ccccCeeeEEECCCCCeEEEEe
Q 005140 305 ADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDK-KS--LKVENVMDFSWSPTDPIISLFV 379 (712)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~-~~--~~~~~v~~~~~sp~~~~la~~~ 379 (712)
.... .+.++| ++++|++++ ++.|.+|++.+...+.. .. ........++++|+++++++.
T Consensus 80 ~~p~--------------~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~- 143 (330)
T PRK11028 80 GSPT--------------HISTDH-QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVP- 143 (330)
T ss_pred CCce--------------EEEECC-CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEe-
Confidence 1111 589999 999888777 89999999874322111 10 112345667788888777542
Q ss_pred ecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEe
Q 005140 380 PELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL 459 (712)
Q Consensus 380 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 459 (712)
..+...|++|++.....+.... ......
T Consensus 144 -----~~~~~~v~v~d~~~~g~l~~~~-----------------------------------------------~~~~~~ 171 (330)
T PRK11028 144 -----CLKEDRIRLFTLSDDGHLVAQE-----------------------------------------------PAEVTT 171 (330)
T ss_pred -----eCCCCEEEEEEECCCCcccccC-----------------------------------------------CCceec
Confidence 1222334444432211100000 000011
Q ss_pred cCCCCceEEEEEeeCCCEEEEEEc-CCCCCeEEEEEeecccccCceeEEEEeC---CC-----ceeEEEEccCCCeEEEE
Q 005140 460 DNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDISFYSMRTAQHAGRVSKLTTLK---GK-----QANALFWSPSGRFIVLA 530 (712)
Q Consensus 460 ~~h~~~v~~~~~sp~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~~---~~-----~v~~l~~spdg~~l~~~ 530 (712)
.. ......++|+|+|++++++.. ++ .|.+|+++...+ ....+..+. .. ....+.++|+|++++++
T Consensus 172 ~~-g~~p~~~~~~pdg~~lyv~~~~~~---~v~v~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~ 245 (330)
T PRK11028 172 VE-GAGPRHMVFHPNQQYAYCVNELNS---SVDVWQLKDPHG--EIECVQTLDMMPADFSDTRWAADIHITPDGRHLYAC 245 (330)
T ss_pred CC-CCCCceEEECCCCCEEEEEecCCC---EEEEEEEeCCCC--CEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEe
Confidence 01 233567899999999988876 45 899999974321 122333332 11 12358899999999998
Q ss_pred eccCCCceEEEEECCcce----eeeecc-ccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 531 GLKGFNGQLEFYNVDELE----TMATAE-HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 531 ~~~~~dg~v~iwd~~~~~----~~~~~~-~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
.. .++.|.+|+++... .+.... ......+.++|||++|+++... ++.|.+|+++
T Consensus 246 ~~--~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~----~~~v~v~~~~ 304 (330)
T PRK11028 246 DR--TASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQK----SHHISVYEID 304 (330)
T ss_pred cC--CCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEcc----CCcEEEEEEc
Confidence 53 26899999985321 222211 1345689999999999988753 7899999885
No 171
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.69 E-value=2.6e-15 Score=151.84 Aligned_cols=281 Identities=16% Similarity=0.216 Sum_probs=197.0
Q ss_pred EEEecCC---CCEEEEEcCCCCCCCcCCCccEEEEEEccCCc------eeeeccCCCcccccCCCCCcCCCCcCeEEecC
Q 005140 258 LIDFSPG---EKYLVTYSSHEPSNPRDANRVVINIFDVRTGK------VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGG 328 (712)
Q Consensus 258 ~i~~Spd---g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 328 (712)
...|++. ...|+.+..+ |.|.++|..... .++.+..|...+ + .+.|-|
T Consensus 54 ~~sFs~~~n~eHiLavadE~----------G~i~l~dt~~~~fr~ee~~lk~~~aH~nAi------------f-Dl~wap 110 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADED----------GGIILFDTKSIVFRLEERQLKKPLAHKNAI------------F-DLKWAP 110 (720)
T ss_pred cccccCCCCccceEEEecCC----------Cceeeecchhhhcchhhhhhccccccccee------------E-eeccCC
Confidence 4566653 3467777777 899999975432 235556666655 2 589999
Q ss_pred CCCCEEEEec-CCeEEEEEcCCceeccc--ccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccce---
Q 005140 329 GKDKYFAKLG-KNMISVYETESFTLIDK--KSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEEL--- 402 (712)
Q Consensus 329 ~dg~~la~~~-d~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~--- 402 (712)
....|++.+ |.++++||+.+..+... ...|...|.+++|.|.+..+.+. |+.|+.+.||.........+
T Consensus 111 -ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~t----GgRDg~illWD~R~n~~d~~e~~ 185 (720)
T KOG0321|consen 111 -GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCT----GGRDGEILLWDCRCNGVDALEEF 185 (720)
T ss_pred -CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceee----ccCCCcEEEEEEeccchhhHHHH
Confidence 777888877 99999999998888776 55688889999999998765543 78899988888776541100
Q ss_pred ----------------------eeeeeeeecc---eeEEECcCCCEEEEEEc-ccccccccccccEEEEEEecCCcc---
Q 005140 403 ----------------------RQKNLFSVSD---CKMYWQSSGDYLAVKVD-RYTKTKKSTYTGFELFRIKERDIP--- 453 (712)
Q Consensus 403 ----------------------~~~~~~~~~~---~~~~~s~~g~~l~~~~~-~~~~~~~~~~~~~~l~~l~~~~~~--- 453 (712)
+........+ +.+.+..|...|++++. |+. +++|+|+.....
T Consensus 186 ~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~---------iKVWDLRk~~~~~r~ 256 (720)
T KOG0321|consen 186 DNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADST---------IKVWDLRKNYTAYRQ 256 (720)
T ss_pred hhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcc---------eEEEeeccccccccc
Confidence 0000011111 22345566777777655 444 899999864332
Q ss_pred --eeEEEecCC---CCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCcee----EEEEccCC
Q 005140 454 --IEVLELDNK---NDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQAN----ALFWSPSG 524 (712)
Q Consensus 454 --~~~~~l~~h---~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~----~l~~spdg 524 (712)
.....++.| ...+.++.....|.+|.+...|+ .|++|++.+-... ++..+.++.+. .-..|||+
T Consensus 257 ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~---sIy~ynm~s~s~s----P~~~~sg~~~~sf~vks~lSpd~ 329 (720)
T KOG0321|consen 257 EPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN---SIYFYNMRSLSIS----PVAEFSGKLNSSFYVKSELSPDD 329 (720)
T ss_pred CCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC---cEEEEeccccCcC----chhhccCcccceeeeeeecCCCC
Confidence 222233333 34577788878889998888898 9999999764433 55555555433 34579999
Q ss_pred CeEEEEeccCCCceEEEEECCccee---eeeccccceeeEEECCCCC-EEEEEEccceeccccEEEEEec
Q 005140 525 RFIVLAGLKGFNGQLEFYNVDELET---MATAEHFMATDVEWDPTGR-YVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 525 ~~l~~~~~~~~dg~v~iwd~~~~~~---~~~~~~~~v~~~~~spdg~-~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
.+|++|+. |...++|.+.+.+. +..+|...|++++|.|.-. -+++++. |..++||++.
T Consensus 330 ~~l~SgSs---d~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSd-----D~~~kiW~l~ 391 (720)
T KOG0321|consen 330 CSLLSGSS---DEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSD-----DFRVKIWRLS 391 (720)
T ss_pred ceEeccCC---CcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeecc-----CcceEEEecc
Confidence 99999998 99999999986654 3457889999999998543 5777888 9999999985
No 172
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=6.4e-17 Score=165.53 Aligned_cols=214 Identities=14% Similarity=0.225 Sum_probs=175.1
Q ss_pred eEEEEECCeeEE-EecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee--cCCCeeEE
Q 005140 184 QFVIRSGTDTEV-LWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY--AHPQVKLI 259 (712)
Q Consensus 184 ~~~~~~~~~~~~-~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~--~~~~v~~i 259 (712)
.+++.+|....+ +|.. .+...+..|.+|...|.|+.|+++..+|+.|+.+| |++||++ ..+.+.++ +...+.++
T Consensus 41 r~~~~Gg~~~k~~L~~i-~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle-eAk~vrtLtgh~~~~~sv 118 (825)
T KOG0267|consen 41 RSLVTGGEDEKVNLWAI-GKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE-EAKIVRTLTGHLLNITSV 118 (825)
T ss_pred eeeccCCCceeeccccc-cCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehh-hhhhhhhhhccccCccee
Confidence 456666665555 9998 56667777999999999999999999999999998 8899999 77766655 34469999
Q ss_pred EecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-
Q 005140 260 DFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG- 338 (712)
Q Consensus 260 ~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~- 338 (712)
.|+|-|.|.|+|+.| +.+.+||++...+...+.+|...+. +++|+| +|++++.++
T Consensus 119 ~f~P~~~~~a~gStd----------td~~iwD~Rk~Gc~~~~~s~~~vv~-------------~l~lsP-~Gr~v~~g~e 174 (825)
T KOG0267|consen 119 DFHPYGEFFASGSTD----------TDLKIWDIRKKGCSHTYKSHTRVVD-------------VLRLSP-DGRWVASGGE 174 (825)
T ss_pred eeccceEEecccccc----------ccceehhhhccCceeeecCCcceeE-------------EEeecC-CCceeeccCC
Confidence 999999999999999 8899999998889999999876653 789999 999999999
Q ss_pred CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEEC
Q 005140 339 KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQ 418 (712)
Q Consensus 339 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s 418 (712)
|++++|||+..|+++..+..|...+..+.|+|..-.++. |+.+..+++|. +.+...+...........+..|+
T Consensus 175 d~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~-----Gs~d~tv~f~d--letfe~I~s~~~~~~~v~~~~fn 247 (825)
T KOG0267|consen 175 DNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAP-----GSSDRTVRFWD--LETFEVISSGKPETDGVRSLAFN 247 (825)
T ss_pred cceeeeecccccccccccccccccccccccCchhhhhcc-----CCCCceeeeec--cceeEEeeccCCccCCceeeeec
Confidence 799999999999999888788888999999999888888 77777766554 44444444444345555667889
Q ss_pred cCCCEEEEEEcc
Q 005140 419 SSGDYLAVKVDR 430 (712)
Q Consensus 419 ~~g~~l~~~~~~ 430 (712)
|+|..++.+-..
T Consensus 248 ~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 248 PDGKIVLSGEQI 259 (825)
T ss_pred CCceeeecCchh
Confidence 998887776543
No 173
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=6.1e-15 Score=156.93 Aligned_cols=236 Identities=14% Similarity=0.208 Sum_probs=155.9
Q ss_pred CeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECc
Q 005140 340 NMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS 419 (712)
Q Consensus 340 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 419 (712)
..|.+||....... ....+...+..++|||+|+.|++... .++...|++|++.+.+...... .......+.|+|
T Consensus 184 ~~i~i~d~dg~~~~-~lt~~~~~v~~p~wSPDG~~la~~s~----~~~~~~i~i~dl~tg~~~~l~~-~~g~~~~~~wSP 257 (429)
T PRK01742 184 YEVRVADYDGFNQF-IVNRSSQPLMSPAWSPDGSKLAYVSF----ENKKSQLVVHDLRSGARKVVAS-FRGHNGAPAFSP 257 (429)
T ss_pred EEEEEECCCCCCce-EeccCCCccccceEcCCCCEEEEEEe----cCCCcEEEEEeCCCCceEEEec-CCCccCceeECC
Confidence 58999998754422 22233445889999999999987321 2344578888886654222111 122233578999
Q ss_pred CCCEEEEEEc-ccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEc-CCCCCeEEEEEeec
Q 005140 420 SGDYLAVKVD-RYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDISFYSMRT 497 (712)
Q Consensus 420 ~g~~l~~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~-d~~~~~v~i~d~~~ 497 (712)
+|+.|++... ++. ..||.++..+... ..+..+...+.+++|+|||+.|++++. ++ ...||.++.
T Consensus 258 DG~~La~~~~~~g~---------~~Iy~~d~~~~~~--~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g---~~~I~~~~~ 323 (429)
T PRK01742 258 DGSRLAFASSKDGV---------LNIYVMGANGGTP--SQLTSGAGNNTEPSWSPDGQSILFTSDRSG---SPQVYRMSA 323 (429)
T ss_pred CCCEEEEEEecCCc---------EEEEEEECCCCCe--EeeccCCCCcCCEEECCCCCEEEEEECCCC---CceEEEEEC
Confidence 9999998764 332 4677666543333 345556777889999999999988875 34 567777654
Q ss_pred ccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEccc
Q 005140 498 AQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSV 577 (712)
Q Consensus 498 ~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~ 577 (712)
.... ...+ .... ..+.|||||++|++++. + .+.+||+.+++............+.|+|||++|++++.
T Consensus 324 ~~~~--~~~l---~~~~-~~~~~SpDG~~ia~~~~---~-~i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~-- 391 (429)
T PRK01742 324 SGGG--ASLV---GGRG-YSAQISADGKTLVMING---D-NVVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSST-- 391 (429)
T ss_pred CCCC--eEEe---cCCC-CCccCCCCCCEEEEEcC---C-CEEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEc--
Confidence 3221 1122 2112 45789999999998874 4 46669998776443222223457899999999999998
Q ss_pred eeccccEEEEEe---cCceeeee--cccceeeeEEecC
Q 005140 578 HEMENGFNIWSF---NGKLLYRT--LKDHFFQFLWRPR 610 (712)
Q Consensus 578 ~~~d~~v~iw~~---~g~~~~~~--~~~~i~~~~w~p~ 610 (712)
++...+|.+ +|...... +.+.+..++|+|.
T Consensus 392 ---~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 392 ---QGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ---CCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 777777654 57766555 4467889999986
No 174
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=2.9e-14 Score=152.36 Aligned_cols=249 Identities=13% Similarity=0.194 Sum_probs=158.2
Q ss_pred eEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcC
Q 005140 341 MISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSS 420 (712)
Q Consensus 341 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 420 (712)
.|.++|...... .....+...+...+|||||+.|++... .++...|+++++.+..... ...+........|+|+
T Consensus 183 ~l~~~d~dg~~~-~~lt~~~~~v~~p~wSpDG~~lay~s~----~~g~~~i~~~dl~~g~~~~-l~~~~g~~~~~~~SPD 256 (435)
T PRK05137 183 RLAIMDQDGANV-RYLTDGSSLVLTPRFSPNRQEITYMSY----ANGRPRVYLLDLETGQREL-VGNFPGMTFAPRFSPD 256 (435)
T ss_pred EEEEECCCCCCc-EEEecCCCCeEeeEECCCCCEEEEEEe----cCCCCEEEEEECCCCcEEE-eecCCCcccCcEECCC
Confidence 678888764432 223334456899999999999988532 2344688899987654322 1112233445689999
Q ss_pred CCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccc
Q 005140 421 GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQH 500 (712)
Q Consensus 421 g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~ 500 (712)
|+.|++...... ...||.++..+... ..+..+.....+.+|+|||++|++.+.......|+++++.++..
T Consensus 257 G~~la~~~~~~g--------~~~Iy~~d~~~~~~--~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~ 326 (435)
T PRK05137 257 GRKVVMSLSQGG--------NTDIYTMDLRSGTT--TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP 326 (435)
T ss_pred CCEEEEEEecCC--------CceEEEEECCCCce--EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe
Confidence 999887654321 14566665444433 33545566677899999999999988654444788888755432
Q ss_pred cCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEcccee-
Q 005140 501 AGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHE- 579 (712)
Q Consensus 501 ~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~- 579 (712)
..+.. .......+.|||||++|++.........|.+||+.++..........+..+.|+|||++|+..+...-.
T Consensus 327 ----~~lt~-~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~ 401 (435)
T PRK05137 327 ----RRISF-GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFRQTPGSG 401 (435)
T ss_pred ----EEeec-CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEEccCCCC
Confidence 23322 233456789999999999876532235788899875443322223356789999999999887762000
Q ss_pred ccccEEEEEecCceeeeec-ccceeeeEEecC
Q 005140 580 MENGFNIWSFNGKLLYRTL-KDHFFQFLWRPR 610 (712)
Q Consensus 580 ~d~~v~iw~~~g~~~~~~~-~~~i~~~~w~p~ 610 (712)
....+.++++.|....... ...+...+|+|.
T Consensus 402 ~~~~L~~~dl~g~~~~~l~~~~~~~~p~Wsp~ 433 (435)
T PRK05137 402 GAPKLYTVDLTGRNEREVPTPGDASDPAWSPL 433 (435)
T ss_pred CcceEEEEECCCCceEEccCCCCccCcccCCC
Confidence 0025677788776554432 234678889875
No 175
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.69 E-value=2e-13 Score=146.43 Aligned_cols=359 Identities=18% Similarity=0.313 Sum_probs=249.2
Q ss_pred cccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcc-eeeeec--CC-CeeEEEe-cCCCC-EEEEEcC-CCCCCC
Q 005140 208 VYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN-RLMRYA--HP-QVKLIDF-SPGEK-YLVTYSS-HEPSNP 279 (712)
Q Consensus 208 ~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~-~~~~~~--~~-~v~~i~~-Spdg~-~l~t~s~-d~~~~~ 279 (712)
.+..|...+.++.|++.+..++.++.++ +.+|+.. ... .+..+. +. .+..+.+ ++++. +++..+. +
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----- 133 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLD-NGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLD----- 133 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcC-CCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCC-----
Confidence 4568888999999999999999999777 8899998 443 444443 22 4777777 88888 5555444 6
Q ss_pred cCCCccEEEEEEccC-CceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCceecccc
Q 005140 280 RDANRVVINIFDVRT-GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKK 356 (712)
Q Consensus 280 ~~~~~~~I~iwd~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~ 356 (712)
+.+.+|+... ......+..|...+. .+.|+| ++.+++.++ ++.+.+|++..+..+...
T Consensus 134 -----~~~~~~~~~~~~~~~~~~~~~~~~v~-------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (466)
T COG2319 134 -----GTVKLWDLSTPGKLIRTLEGHSESVT-------------SLAFSP-DGKLLASGSSLDGTIKLWDLRTGKPLSTL 194 (466)
T ss_pred -----ccEEEEEecCCCeEEEEEecCcccEE-------------EEEECC-CCCEEEecCCCCCceEEEEcCCCceEEee
Confidence 7899999877 678888888877662 589999 998777776 899999999986666555
Q ss_pred cccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcccee-eeeeeeecceeEEECcCCCEEEEEEccccccc
Q 005140 357 SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELR-QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTK 435 (712)
Q Consensus 357 ~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~ 435 (712)
..|...|.+++|+|++..++.. ++.++.+++| +......+. ....+.... ...|++++.+++++..++.
T Consensus 195 ~~~~~~v~~~~~~~~~~~~~~~----~~~d~~i~~w--d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~--- 264 (466)
T COG2319 195 AGHTDPVSSLAFSPDGGLLIAS----GSSDGTIRLW--DLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT--- 264 (466)
T ss_pred ccCCCceEEEEEcCCcceEEEE----ecCCCcEEEE--ECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCc---
Confidence 5677889999999999833331 3577777755 555444433 222222221 1168999988887777766
Q ss_pred ccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEE-EeCCCc
Q 005140 436 KSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLT-TLKGKQ 514 (712)
Q Consensus 436 ~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~-~~~~~~ 514 (712)
+.+|++.......... .+|...+.++.|+|++..+++++.++ .+.+|++...... .... ......
T Consensus 265 ------~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~~~---~~~~~~~~~~~ 330 (466)
T COG2319 265 ------IRLWDLRSSSSLLRTL--SGHSSSVLSVAFSPDGKLLASGSSDG---TVRLWDLETGKLL---SSLTLKGHEGP 330 (466)
T ss_pred ------EEEeeecCCCcEEEEE--ecCCccEEEEEECCCCCEEEEeeCCC---cEEEEEcCCCceE---EEeeecccCCc
Confidence 7888887655422222 57889999999999999999877775 6999987654321 1111 112224
Q ss_pred eeEEEEccCCCeEEEE-eccCCCceEEEEECCcceeeeecccc-ceeeEEECCCCCEEEE-EEccceeccccEEEEEecC
Q 005140 515 ANALFWSPSGRFIVLA-GLKGFNGQLEFYNVDELETMATAEHF-MATDVEWDPTGRYVAT-AVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 515 v~~l~~spdg~~l~~~-~~~~~dg~v~iwd~~~~~~~~~~~~~-~v~~~~~spdg~~l~t-~s~~~~~~d~~v~iw~~~g 591 (712)
+..+.|++++..++.+ .. ++.+.+|++............ .+..+.+++ ...++. +.. ++.+.+|+...
T Consensus 331 ~~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~ 401 (466)
T COG2319 331 VSSLSFSPDGSLLVSGGSD---DGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-DGRVVSSGST-----DGTVRLWDLST 401 (466)
T ss_pred eEEEEECCCCCEEEEeecC---CCcEEeeecCCCceeEEecCCceEEEEEECC-CCCEEEEecC-----CCceEEEeccc
Confidence 7888884343566666 34 788999999876633332222 278999999 633333 455 89999999885
Q ss_pred ceeeee--cc-cceeeeEEecCCCCCCChhhHHHHH
Q 005140 592 KLLYRT--LK-DHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 592 ~~~~~~--~~-~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
...... .. ..+....+++++..++++..+..++
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (466)
T COG2319 402 GSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIR 437 (466)
T ss_pred CeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEE
Confidence 443322 22 6788889999988887755555443
No 176
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=2.7e-14 Score=150.37 Aligned_cols=324 Identities=13% Similarity=0.195 Sum_probs=204.9
Q ss_pred cceEEEcCCCcEEEEEecCceEEeecccCcceeeee----cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEE
Q 005140 216 ESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRY----AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIF 290 (712)
Q Consensus 216 v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~----~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iw 290 (712)
-.++.+++.|.+.+.....++.+|......+..... +|. .+++.++||+++++|++..+ |.|.+|
T Consensus 163 ~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~d----------GrI~vw 232 (792)
T KOG1963|consen 163 PKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSD----------GRILVW 232 (792)
T ss_pred CccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccC----------CcEEEE
Confidence 467999999999999999999999887222222211 343 38999999999999999999 999999
Q ss_pred EccC--C--ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccc-cCee
Q 005140 291 DVRT--G--KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKV-ENVM 364 (712)
Q Consensus 291 d~~~--g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~-~~v~ 364 (712)
.--. + ...+.+.-|...+. ++.||+ +|.+|.+|+ .+.+.+|.+.+++. +..... ..|.
T Consensus 233 ~d~~~~~~~~t~t~lHWH~~~V~-------------~L~fS~-~G~~LlSGG~E~VLv~Wq~~T~~k--qfLPRLgs~I~ 296 (792)
T KOG1963|consen 233 RDFGSSDDSETCTLLHWHHDEVN-------------SLSFSS-DGAYLLSGGREGVLVLWQLETGKK--QFLPRLGSPIL 296 (792)
T ss_pred eccccccccccceEEEecccccc-------------eeEEec-CCceEeecccceEEEEEeecCCCc--ccccccCCeeE
Confidence 7322 1 13455666666654 799999 999999999 99999999998762 222222 3589
Q ss_pred eEEECCCCCeEEEEeecCCCCCCCeEEEEE-ecCCccceeeeeee--------eecceeEEECcCCCEEEEEEccccccc
Q 005140 365 DFSWSPTDPIISLFVPELGGGNQPARVSLV-QIPSKEELRQKNLF--------SVSDCKMYWQSSGDYLAVKVDRYTKTK 435 (712)
Q Consensus 365 ~~~~sp~~~~la~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~--------~~~~~~~~~s~~g~~l~~~~~~~~~~~ 435 (712)
.+.+|||+...++ ...|+.+.+... ++.....+...... ..-...+..+|.-+.++.....+.
T Consensus 297 ~i~vS~ds~~~sl-----~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~--- 368 (792)
T KOG1963|consen 297 HIVVSPDSDLYSL-----VLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGH--- 368 (792)
T ss_pred EEEEcCCCCeEEE-----EecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCce---
Confidence 9999999998887 335555544333 22222222211111 111122345664444444444333
Q ss_pred ccccccEEEEEEecCCcceeE--EEec------CCCCceEEEEEeeCCCEEEEEEc--------CCCCCeEEEEEeeccc
Q 005140 436 KSTYTGFELFRIKERDIPIEV--LELD------NKNDKIIAFAWEPKGHRFAVIHG--------DSPRPDISFYSMRTAQ 499 (712)
Q Consensus 436 ~~~~~~~~l~~l~~~~~~~~~--~~l~------~h~~~v~~~~~sp~g~~l~~~~~--------d~~~~~v~i~d~~~~~ 499 (712)
+++|++.....-... .... .+...+++++.+-.|.++++.-. ++ ...+++|-.....
T Consensus 369 ------vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~-e~~LKFW~~n~~~ 441 (792)
T KOG1963|consen 369 ------VQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDG-EVSLKFWQYNPNS 441 (792)
T ss_pred ------EEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCc-eEEEEEEEEcCCc
Confidence 566665433211110 0111 11234677777888999988753 22 2368899876543
Q ss_pred ccCceeEEEEeC-CC--c-eeEEEEccCCC-eEEEEeccCCCceEEEEECCc------------ceeeeeccccceeeEE
Q 005140 500 HAGRVSKLTTLK-GK--Q-ANALFWSPSGR-FIVLAGLKGFNGQLEFYNVDE------------LETMATAEHFMATDVE 562 (712)
Q Consensus 500 ~~~~~~~~~~~~-~~--~-v~~l~~spdg~-~l~~~~~~~~dg~v~iwd~~~------------~~~~~~~~~~~v~~~~ 562 (712)
.. +.+...+. .| . +..+..+|... .+++++. ||.++||-+.. ...+...|..+++.++
T Consensus 442 kt--~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~---dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~ 516 (792)
T KOG1963|consen 442 KT--FILNTKINNPHGNAFVATIFLNPTRSVRCVTASV---DGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALC 516 (792)
T ss_pred ce--eEEEEEEecCCCceeEEEEEecCcccceeEEecc---CCeEEEEEEecccccCcCccceEEeeeeccccCcccchh
Confidence 32 33333332 22 2 23334444433 7888888 99999998842 2233346678999999
Q ss_pred ECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 563 WDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 563 ~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
||.||..|+.+. ++.|.|||+..
T Consensus 517 fs~dGslla~s~------~~~Itiwd~~~ 539 (792)
T KOG1963|consen 517 FSQDGSLLAVSF------DDTITIWDYDT 539 (792)
T ss_pred hcCCCcEEEEec------CCEEEEecCCC
Confidence 999997655554 58999999875
No 177
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.68 E-value=1.8e-14 Score=142.71 Aligned_cols=232 Identities=16% Similarity=0.232 Sum_probs=166.4
Q ss_pred cccccccCCCCCCCCCCCCCCCCCccchhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCC
Q 005140 146 DDFDKFMKVPDEWAPPEHKPYTPGENLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLG 225 (712)
Q Consensus 146 ~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg 225 (712)
.+.....+.|+.+.|+...++.. .. .-..+.+-|++.++|+...+-+- .++.+.....|...+.|-.|||||
T Consensus 45 ~~s~~~~~~p~df~pt~~h~~~r-s~-----~~g~~~d~~~i~s~DGkf~il~k--~~rVE~sv~AH~~A~~~gRW~~dG 116 (737)
T KOG1524|consen 45 RDSVEVAKLPDDFVPTDMHLGGR-SS-----GGGKGSDTLLICSNDGRFVILNK--SARVERSISAHAAAISSGRWSPDG 116 (737)
T ss_pred chhhhhhhCCcccCCcccccccc-cc-----CCCCCcceEEEEcCCceEEEecc--cchhhhhhhhhhhhhhhcccCCCC
Confidence 34455667888888887664422 11 11346788999999998887765 566777889999999999999999
Q ss_pred cEEEEEecCc-eEEeecccCcceeeeec-CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccC
Q 005140 226 TYLATVHRQG-AAVWGGANTFNRLMRYA-HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKG 303 (712)
Q Consensus 226 ~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~ 303 (712)
.-|+|++.|| |++|.-. ...+-.-.+ ...|.|++|.|+...++.+..+ ++.|=-+.-...+-..+.
T Consensus 117 tgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~-----------h~~IKpL~~n~k~i~WkA 184 (737)
T KOG1524|consen 117 AGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFCQGG-----------HISIKPLAANSKIIRWRA 184 (737)
T ss_pred ceeeeecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEecCC-----------eEEEeecccccceeEEec
Confidence 9999999999 7799987 333222222 3359999999999888887766 577767766666777888
Q ss_pred CCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecC
Q 005140 304 SADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPEL 382 (712)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~ 382 (712)
|.+.+. ++.|++ ..+++++++ |-..+|||... ..+.....|.-.|++++|+|+ +.++++
T Consensus 185 HDGiiL-------------~~~W~~-~s~lI~sgGED~kfKvWD~~G-~~Lf~S~~~ey~ITSva~npd-~~~~v~---- 244 (737)
T KOG1524|consen 185 HDGLVL-------------SLSWST-QSNIIASGGEDFRFKIWDAQG-ANLFTSAAEEYAITSVAFNPE-KDYLLW---- 244 (737)
T ss_pred cCcEEE-------------EeecCc-cccceeecCCceeEEeecccC-cccccCChhccceeeeeeccc-cceeee----
Confidence 887764 789999 999999999 99999999874 344444566677999999999 555542
Q ss_pred CCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccc
Q 005140 383 GGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYT 432 (712)
Q Consensus 383 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~ 432 (712)
.-+..+ + ......+...++||+||..+++++..+.
T Consensus 245 --S~nt~R---~----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~ 279 (737)
T KOG1524|consen 245 --SYNTAR---F----------SSPRVGSIFNLSWSADGTQATCGTSTGQ 279 (737)
T ss_pred --eeeeee---e----------cCCCccceEEEEEcCCCceeeccccCce
Confidence 112222 1 1112234455677888777777666543
No 178
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=4.8e-14 Score=141.22 Aligned_cols=341 Identities=15% Similarity=0.245 Sum_probs=222.5
Q ss_pred EEEEEecCceEEeecccCcceeeeecCC----CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeecc
Q 005140 227 YLATVHRQGAAVWGGANTFNRLMRYAHP----QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFK 302 (712)
Q Consensus 227 ~lat~~~~~i~iw~~~~~~~~~~~~~~~----~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~ 302 (712)
.++.-+..++.+|++.+.......+.+. .+...++|++|+++|.+..+ .++|++..++..+.+..
T Consensus 4 ~~aVRsSe~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~~~-----------~v~i~~~~~~~~~lt~~ 72 (566)
T KOG2315|consen 4 VYAVRSSEGFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSDNQ-----------VVKVFEIATLKVVLCVE 72 (566)
T ss_pred eEEEEccceeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEcCC-----------eEEEEEccCCcEEEEec
Confidence 3555566778899988555555566542 26789999999999988776 79999988885444443
Q ss_pred CCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec------C-----CeEEEEEcCCceecccccccccCeeeEEECCC
Q 005140 303 GSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG------K-----NMISVYETESFTLIDKKSLKVENVMDFSWSPT 371 (712)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~------d-----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~ 371 (712)
.. ... .+.||| -|.||.+.. + -.+.+|++.++............-.+..|++|
T Consensus 73 ~~-~~~--------------~L~fSP-~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~d 136 (566)
T KOG2315|consen 73 LK-KTY--------------DLLFSP-KGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSID 136 (566)
T ss_pred cc-eee--------------eeeecc-cccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccc
Confidence 33 222 689999 999997652 2 34779999985444333334443468899998
Q ss_pred CCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCC--CEEEEEEcccccccccccccEEEEEEec
Q 005140 372 DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSG--DYLAVKVDRYTKTKKSTYTGFELFRIKE 449 (712)
Q Consensus 372 ~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g--~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 449 (712)
..+.|. .....+.+|++...+.+. ..++......+..||.+ .++|+-..... .....++||.+..
T Consensus 137 Esl~ar--------lv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~k----GaPa~vri~~~~~ 203 (566)
T KOG2315|consen 137 ESLAAR--------LVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKK----GAPASVRIYKYPE 203 (566)
T ss_pred hhhhhh--------hhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCCC----CCCcEEEEecccc
Confidence 776664 223346667766644322 22233333444566654 46666544321 2234478888763
Q ss_pred CC--cceeEEEecCCCCceEEEEEeeCCCEEEEE-Ec--CC------CCCeEEEEEeecccccCceeEEEEeCCCceeEE
Q 005140 450 RD--IPIEVLELDNKNDKIIAFAWEPKGHRFAVI-HG--DS------PRPDISFYSMRTAQHAGRVSKLTTLKGKQANAL 518 (712)
Q Consensus 450 ~~--~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~-~~--d~------~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l 518 (712)
.+ .++...++ ....-..+.|++-|.-|++. +. |. +..++++++++... ..+.-...++|.++
T Consensus 204 ~~~~~~~a~ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s-----~~V~L~k~GPVhdv 276 (566)
T KOG2315|consen 204 EGQHQPVANKSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES-----VSVPLLKEGPVHDV 276 (566)
T ss_pred ccccchhhhccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce-----EEEecCCCCCceEE
Confidence 22 22222222 12334468899877754433 32 22 12368888876211 12333336799999
Q ss_pred EEccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEecC-ceeeee
Q 005140 519 FWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG-KLLYRT 597 (712)
Q Consensus 519 ~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g-~~~~~~ 597 (712)
.|+|+|+-++++- |.+-..+.|||++ +..+.....++-+++-|+|.|++|+.++-. ...|.+-|||+.. +++.+.
T Consensus 277 ~W~~s~~EF~Vvy-GfMPAkvtifnlr-~~~v~df~egpRN~~~fnp~g~ii~lAGFG--NL~G~mEvwDv~n~K~i~~~ 352 (566)
T KOG2315|consen 277 TWSPSGREFAVVY-GFMPAKVTIFNLR-GKPVFDFPEGPRNTAFFNPHGNIILLAGFG--NLPGDMEVWDVPNRKLIAKF 352 (566)
T ss_pred EECCCCCEEEEEE-ecccceEEEEcCC-CCEeEeCCCCCccceEECCCCCEEEEeecC--CCCCceEEEeccchhhcccc
Confidence 9999998766553 4468899999999 677777777788899999999999998874 1258899999875 455555
Q ss_pred cccceeeeEEecCCCCCCChh
Q 005140 598 LKDHFFQFLWRPRPPSFLTPE 618 (712)
Q Consensus 598 ~~~~i~~~~w~p~~~~l~s~~ 618 (712)
....-+-+.|+|+|.+++|+.
T Consensus 353 ~a~~tt~~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 353 KAANTTVFEWSPDGEYFLTAT 373 (566)
T ss_pred ccCCceEEEEcCCCcEEEEEe
Confidence 556677899999999999875
No 179
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.67 E-value=1.3e-15 Score=144.58 Aligned_cols=200 Identities=16% Similarity=0.316 Sum_probs=141.4
Q ss_pred cceeeeeeeeecceeEEECcCCC-EEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeC-CCE
Q 005140 400 EELRQKNLFSVSDCKMYWQSSGD-YLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK-GHR 477 (712)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~s~~g~-~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~-g~~ 477 (712)
+++...+.+......+.|||--. .|+++... ..+.+|......-.+....+.+|...|..++|||. ...
T Consensus 202 ~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~---------~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~v 272 (440)
T KOG0302|consen 202 RPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCV---------KGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGV 272 (440)
T ss_pred CceEEecccCccceeeecccccccccccCccc---------cceEeeeeccCceeecCccccccccchhhhccCCccCce
Confidence 34555555666677888998322 13332222 23788888776666666778899999999999995 568
Q ss_pred EEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcc---eeee--e
Q 005140 478 FAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL---ETMA--T 552 (712)
Q Consensus 478 l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~---~~~~--~ 552 (712)
|++++.|+ +|+|||++.+... ......-++..|+.+.|+-+-.+|++|+. ||++.|||++.. +.++ +
T Consensus 273 faScS~Dg---sIrIWDiRs~~~~--~~~~~kAh~sDVNVISWnr~~~lLasG~D---dGt~~iwDLR~~~~~~pVA~fk 344 (440)
T KOG0302|consen 273 FASCSCDG---SIRIWDIRSGPKK--AAVSTKAHNSDVNVISWNRREPLLASGGD---DGTLSIWDLRQFKSGQPVATFK 344 (440)
T ss_pred EEeeecCc---eEEEEEecCCCcc--ceeEeeccCCceeeEEccCCcceeeecCC---CceEEEEEhhhccCCCcceeEE
Confidence 89999999 9999999886432 11222334557999999999889999987 999999999853 3343 4
Q ss_pred ccccceeeEEECCCCC-EEEEEEccceeccccEEEEEecCc-------------------eeeeecc--cceeeeEEecC
Q 005140 553 AEHFMATDVEWDPTGR-YVATAVTSVHEMENGFNIWSFNGK-------------------LLYRTLK--DHFFQFLWRPR 610 (712)
Q Consensus 553 ~~~~~v~~~~~spdg~-~l~t~s~~~~~~d~~v~iw~~~g~-------------------~~~~~~~--~~i~~~~w~p~ 610 (712)
.|..+|+++.|+|... .|++++. |+.|.|||+.-. +|.-.|. ..+..+.|+++
T Consensus 345 ~Hk~pItsieW~p~e~s~iaasg~-----D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~Q 419 (440)
T KOG0302|consen 345 YHKAPITSIEWHPHEDSVIAASGE-----DNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQ 419 (440)
T ss_pred eccCCeeEEEeccccCceEEeccC-----CCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccC
Confidence 7889999999999655 5556666 999999998521 0111232 46778899988
Q ss_pred CC-CCCChhhHH
Q 005140 611 PP-SFLTPEKEE 621 (712)
Q Consensus 611 ~~-~l~s~~~d~ 621 (712)
-+ +|+|.+.++
T Consensus 420 iPG~lvsTa~dG 431 (440)
T KOG0302|consen 420 IPGLLVSTAIDG 431 (440)
T ss_pred CCCeEEEecccc
Confidence 55 555554443
No 180
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=1e-14 Score=155.22 Aligned_cols=233 Identities=15% Similarity=0.081 Sum_probs=148.0
Q ss_pred eeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc----eEEeecccCcce--eeeecCCCeeEEEecCCC
Q 005140 192 DTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG----AAVWGGANTFNR--LMRYAHPQVKLIDFSPGE 265 (712)
Q Consensus 192 ~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~----i~iw~~~~~~~~--~~~~~~~~v~~i~~Spdg 265 (712)
..+.+|+.+ +.....+..|...+.+++|||||++||+++.++ +.+|++. ++.. +..+. .....++|||||
T Consensus 184 ~~i~i~d~d--g~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~-tg~~~~l~~~~-g~~~~~~wSPDG 259 (429)
T PRK01742 184 YEVRVADYD--GFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLR-SGARKVVASFR-GHNGAPAFSPDG 259 (429)
T ss_pred EEEEEECCC--CCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCC-CCceEEEecCC-CccCceeECCCC
Confidence 455677763 333455678888899999999999999987432 7899998 5443 22222 235579999999
Q ss_pred CEEEEEcC-CCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeE
Q 005140 266 KYLVTYSS-HEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMI 342 (712)
Q Consensus 266 ~~l~t~s~-d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i 342 (712)
++|++++. + +...|++||+.++.. +.+..+..... .+.|+| ||+.|++.+ ++..
T Consensus 260 ~~La~~~~~~--------g~~~Iy~~d~~~~~~-~~lt~~~~~~~-------------~~~wSp-DG~~i~f~s~~~g~~ 316 (429)
T PRK01742 260 SRLAFASSKD--------GVLNIYVMGANGGTP-SQLTSGAGNNT-------------EPSWSP-DGQSILFTSDRSGSP 316 (429)
T ss_pred CEEEEEEecC--------CcEEEEEEECCCCCe-EeeccCCCCcC-------------CEEECC-CCCEEEEEECCCCCc
Confidence 99988753 4 012456667766654 44444433221 589999 999887766 6788
Q ss_pred EEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCC
Q 005140 343 SVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGD 422 (712)
Q Consensus 343 ~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 422 (712)
.||+++........ ....+ ...+|+|+|+.|++ .+.+ .++.+++.+.......... ....+.|+|+|+
T Consensus 317 ~I~~~~~~~~~~~~-l~~~~-~~~~~SpDG~~ia~-----~~~~---~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~ 384 (429)
T PRK01742 317 QVYRMSASGGGASL-VGGRG-YSAQISADGKTLVM-----INGD---NVVKQDLTSGSTEVLSSTF--LDESPSISPNGI 384 (429)
T ss_pred eEEEEECCCCCeEE-ecCCC-CCccCCCCCCEEEE-----EcCC---CEEEEECCCCCeEEecCCC--CCCCceECCCCC
Confidence 88886532111111 11122 45789999999987 3332 3566777665432111111 223467999999
Q ss_pred EEEEEEcccccccccccccEEEEEEe-cCCcceeEEEecCCCCceEEEEEeeC
Q 005140 423 YLAVKVDRYTKTKKSTYTGFELFRIK-ERDIPIEVLELDNKNDKIIAFAWEPK 474 (712)
Q Consensus 423 ~l~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~~~~~l~~h~~~v~~~~~sp~ 474 (712)
+|++++.++. ..+|.+. ..+.. ...+.+|.+.+..++|+|-
T Consensus 385 ~i~~~s~~g~---------~~~l~~~~~~G~~--~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 385 MIIYSSTQGL---------GKVLQLVSADGRF--KARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EEEEEEcCCC---------ceEEEEEECCCCc--eEEccCCCCCCCCcccCCC
Confidence 9999887655 3444443 23332 2445677888999999984
No 181
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=2e-14 Score=152.55 Aligned_cols=238 Identities=14% Similarity=0.075 Sum_probs=149.7
Q ss_pred EecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecC----ceEEeecccCcceeeeecC-CCeeEEEecCCCCEEEE
Q 005140 196 LWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQ----GAAVWGGANTFNRLMRYAH-PQVKLIDFSPGEKYLVT 270 (712)
Q Consensus 196 ~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~----~i~iw~~~~~~~~~~~~~~-~~v~~i~~Spdg~~l~t 270 (712)
+|-.+..+.....++.+...+.+++|||||+.||+.+.. .+.+|++. +++....... ..+..+.|||||++|+.
T Consensus 181 l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~-~G~~~~l~~~~~~~~~~~~SPDG~~La~ 259 (429)
T PRK03629 181 LRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLA-NGAVRQVASFPRHNGAPAFSPDGSKLAF 259 (429)
T ss_pred EEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECC-CCCeEEccCCCCCcCCeEECCCCCEEEE
Confidence 444333444445566677789999999999999987532 27789988 5543322222 23667999999999987
Q ss_pred EcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEE--E
Q 005140 271 YSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVY--E 346 (712)
Q Consensus 271 ~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iw--d 346 (712)
..... +...|++||+.+++..+....+.... .+.|+| ||+.|++.+ ++...|| +
T Consensus 260 ~~~~~-------g~~~I~~~d~~tg~~~~lt~~~~~~~--------------~~~wSP-DG~~I~f~s~~~g~~~Iy~~d 317 (429)
T PRK03629 260 ALSKT-------GSLNLYVMDLASGQIRQVTDGRSNNT--------------EPTWFP-DSQNLAYTSDQAGRPQVYKVN 317 (429)
T ss_pred EEcCC-------CCcEEEEEECCCCCEEEccCCCCCcC--------------ceEECC-CCCEEEEEeCCCCCceEEEEE
Confidence 64320 11369999998887654433322222 589999 999988777 3444555 5
Q ss_pred cCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEE
Q 005140 347 TESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAV 426 (712)
Q Consensus 347 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~ 426 (712)
+.++... .............|||+|++|++.. ..++...|+++++.+......... .......|+|||++|++
T Consensus 318 ~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia~~~----~~~g~~~I~~~dl~~g~~~~Lt~~--~~~~~p~~SpDG~~i~~ 390 (429)
T PRK03629 318 INGGAPQ-RITWEGSQNQDADVSSDGKFMVMVS----SNGGQQHIAKQDLATGGVQVLTDT--FLDETPSIAPNGTMVIY 390 (429)
T ss_pred CCCCCeE-EeecCCCCccCEEECCCCCEEEEEE----ccCCCceEEEEECCCCCeEEeCCC--CCCCCceECCCCCEEEE
Confidence 5555332 1222223356789999999998742 233456788888766542221111 12335689999999999
Q ss_pred EEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee
Q 005140 427 KVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP 473 (712)
Q Consensus 427 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp 473 (712)
.+.++.. ..++.+...+... ..+++|.+.+...+|+|
T Consensus 391 ~s~~~~~--------~~l~~~~~~G~~~--~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 391 SSSQGMG--------SVLNLVSTDGRFK--ARLPATDGQVKFPAWSP 427 (429)
T ss_pred EEcCCCc--------eEEEEEECCCCCe--EECccCCCCcCCcccCC
Confidence 8876541 2344444333322 34556788899999998
No 182
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1e-14 Score=138.89 Aligned_cols=293 Identities=14% Similarity=0.164 Sum_probs=192.7
Q ss_pred cccCCCcccceEEEcCCCcEEEEEecCc-eEEeeccc-----Ccceeeee--cC-CCeeEEEecCCCCEEEEEcCCCCCC
Q 005140 208 VYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGAN-----TFNRLMRY--AH-PQVKLIDFSPGEKYLVTYSSHEPSN 278 (712)
Q Consensus 208 ~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~-----~~~~~~~~--~~-~~v~~i~~Spdg~~l~t~s~d~~~~ 278 (712)
-+.+|.+.|+.+.||.+|++||+|+.+. +.||+++. ..+++... +| ..|.|++|....++|.+|..+
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~---- 126 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW---- 126 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc----
Confidence 4568999999999999999999999998 88998761 11233322 34 459999999999999999999
Q ss_pred CcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCce-ecccc
Q 005140 279 PRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT-LIDKK 356 (712)
Q Consensus 279 ~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~-~~~~~ 356 (712)
++|.+-|+.+.+.+..+...... +.|. .+..+| .++.|++.+ ++.|.+||..... .+...
T Consensus 127 ------~~VI~HDiEt~qsi~V~~~~~~~------~~VY-----~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~ 188 (609)
T KOG4227|consen 127 ------GTVIKHDIETKQSIYVANENNNR------GDVY-----HMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLV 188 (609)
T ss_pred ------ceeEeeecccceeeeeecccCcc------ccee-----ecccCC-CCceEEEEecCceEEEEeccCCCCCCcee
Confidence 99999999999888777544321 1122 367788 888888888 9999999987443 11111
Q ss_pred cc--cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeee-----ecceeEEECcCCCEEEEEEc
Q 005140 357 SL--KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFS-----VSDCKMYWQSSGDYLAVKVD 429 (712)
Q Consensus 357 ~~--~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~g~~l~~~~~ 429 (712)
.. .......+.|+|-...|+.. ++..+...+|....+....++...+.. ..-....|+|+|..++....
T Consensus 189 ~~AN~~~~F~t~~F~P~~P~Li~~----~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR 264 (609)
T KOG4227|consen 189 LPANSGKNFYTAEFHPETPALILV----NSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR 264 (609)
T ss_pred eecCCCccceeeeecCCCceeEEe----ccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc
Confidence 11 12246788999987655543 444555567766666544333221111 11245579999998876554
Q ss_pred ccccccccccccEEEEEEecCCcceeEEEecCCC-------CceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccC
Q 005140 430 RYTKTKKSTYTGFELFRIKERDIPIEVLELDNKN-------DKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAG 502 (712)
Q Consensus 430 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~-------~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~ 502 (712)
... -.+|++.....++ +.. .|+ ..+.+++|.-|- .+++++.+- .|++|.+.......
T Consensus 265 ~~~---------P~~~D~~S~R~~V--~k~-D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~---~i~~WklP~~~ds~ 328 (609)
T KOG4227|consen 265 GKC---------PLYFDFISQRCFV--LKS-DHNPNGYCNIKTIKSMTFIDDY-TVATGSDHW---GIHIWKLPRANDSY 328 (609)
T ss_pred cCC---------CEEeeeeccccee--Eec-cCCCCcceeeeeeeeeeeecce-eeeccCccc---ceEEEecCCCcccc
Confidence 433 2344444333332 111 111 235567776444 377777776 79999985422111
Q ss_pred c-----------------eeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 503 R-----------------VSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 503 ~-----------------~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
. -+.+..+.+| -++.+.|+|...+|++.+. ...++||.--
T Consensus 329 G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGV---E~~~KlWS~~ 387 (609)
T KOG4227|consen 329 GFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGV---ENSFKLWSDH 387 (609)
T ss_pred CccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccch---hhheeccccc
Confidence 1 0224455566 3689999999999999887 8899999643
No 183
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.67 E-value=1.9e-14 Score=132.25 Aligned_cols=288 Identities=14% Similarity=0.239 Sum_probs=183.2
Q ss_pred CcccceEEEcC--C-CcEEEEEec-----CceEEeeccc-Ccce--eeeecCCC-eeEEEecCCCC-----EEEEEcCCC
Q 005140 213 YWTESFVQWSP--L-GTYLATVHR-----QGAAVWGGAN-TFNR--LMRYAHPQ-VKLIDFSPGEK-----YLVTYSSHE 275 (712)
Q Consensus 213 ~~~v~~v~~Sp--d-g~~lat~~~-----~~i~iw~~~~-~~~~--~~~~~~~~-v~~i~~Spdg~-----~l~t~s~d~ 275 (712)
.|+...+.||. + +-+||.|+- +.|.|..+.. ++.. ...|.|+- ++.+.|.|+.+ .|||.+ |
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~-D- 121 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS-D- 121 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc-C-
Confidence 37788899983 3 457888873 3455554321 3333 33456775 99999999863 455554 3
Q ss_pred CCCCcCCCccEEEEEEccC--Cce--eeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCc
Q 005140 276 PSNPRDANRVVINIFDVRT--GKV--MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESF 350 (712)
Q Consensus 276 ~~~~~~~~~~~I~iwd~~~--g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~ 350 (712)
.+++|.+.. ++. ...+..+... ..+++.+ ++.|..-+-++|.+++ |.+..|||+.++
T Consensus 122 ----------~LRlWri~~ee~~~~~~~~L~~~kns---~~~aPlT-----SFDWne~dp~~igtSSiDTTCTiWdie~~ 183 (364)
T KOG0290|consen 122 ----------FLRLWRIGDEESRVELQSVLNNNKNS---EFCAPLT-----SFDWNEVDPNLIGTSSIDTTCTIWDIETG 183 (364)
T ss_pred ----------eEEEEeccCcCCceehhhhhccCccc---ccCCccc-----ccccccCCcceeEeecccCeEEEEEEeec
Confidence 499999863 221 1122222211 1122333 4555442557888888 999999999986
Q ss_pred e---ecccccccccCeeeEEECCCCC-eEEEEeecCCCCCCCeEEEEEecCCcc-ceeeeeeeeecceeEEECcCCC-EE
Q 005140 351 T---LIDKKSLKVENVMDFSWSPTDP-IISLFVPELGGGNQPARVSLVQIPSKE-ELRQKNLFSVSDCKMYWQSSGD-YL 424 (712)
Q Consensus 351 ~---~~~~~~~~~~~v~~~~~sp~~~-~la~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~g~-~l 424 (712)
. +...+..|...|.+++|+.++. .+|+ .|+|+.++++.+.--... .+....-....-.++.|+++.. ++
T Consensus 184 ~~~~vkTQLIAHDKEV~DIaf~~~s~~~FAS-----vgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnym 258 (364)
T KOG0290|consen 184 VSGTVKTQLIAHDKEVYDIAFLKGSRDVFAS-----VGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYM 258 (364)
T ss_pred cccceeeEEEecCcceeEEEeccCccceEEE-----ecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHH
Confidence 3 2333445777899999999765 4455 668888777655432222 2222222234456778988664 66
Q ss_pred EEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeC-CCEEEEEEcCCCCCeEEEEEeecccccCc
Q 005140 425 AVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK-GHRFAVIHGDSPRPDISFYSMRTAQHAGR 503 (712)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~-g~~l~~~~~d~~~~~v~i~d~~~~~~~~~ 503 (712)
|+...+.. .+.+.+++....++ .+|.+|.+.|+.++|.|. +..|++++.|. .+.|||+.+.....-
T Consensus 259 ATf~~dS~--------~V~iLDiR~P~tpv--a~L~~H~a~VNgIaWaPhS~~hictaGDD~---qaliWDl~q~~~~~~ 325 (364)
T KOG0290|consen 259 ATFAMDSN--------KVVILDIRVPCTPV--ARLRNHQASVNGIAWAPHSSSHICTAGDDC---QALIWDLQQMPRENG 325 (364)
T ss_pred hhhhcCCc--------eEEEEEecCCCcce--ehhhcCcccccceEecCCCCceeeecCCcc---eEEEEecccccccCC
Confidence 66555533 26788888776665 567899999999999994 67888888888 899999976443111
Q ss_pred eeEEEEeC-CCceeEEEEcc-CCCeEEEEeccCCCceEEEE
Q 005140 504 VSKLTTLK-GKQANALFWSP-SGRFIVLAGLKGFNGQLEFY 542 (712)
Q Consensus 504 ~~~~~~~~-~~~v~~l~~sp-dg~~l~~~~~~~~dg~v~iw 542 (712)
..++.... ++.|+.+.|+| .+.+++++. +..+.|.
T Consensus 326 ~dPilay~a~~EVNqi~Ws~~~~Dwiai~~----~kkleiL 362 (364)
T KOG0290|consen 326 EDPILAYTAGGEVNQIQWSSSQPDWIAICF----GKKLEIL 362 (364)
T ss_pred CCchhhhhccceeeeeeecccCCCEEEEEe----cCeeeEE
Confidence 22333332 56799999996 567887776 4555553
No 184
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.67 E-value=6.1e-13 Score=130.21 Aligned_cols=394 Identities=15% Similarity=0.226 Sum_probs=224.1
Q ss_pred chhhccCCCCC-ceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEe------cCc--eEEeecc
Q 005140 172 LQKWLTDEKAR-DQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVH------RQG--AAVWGGA 242 (712)
Q Consensus 172 l~~~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~------~~~--i~iw~~~ 242 (712)
+...++.|+=+ |..+..+.|. +|...........++.|-+.|+...|||+|+.+|+.- .++ +.+.+.+
T Consensus 39 M~n~~l~PDI~GD~IiFt~~Dd---lWe~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e 115 (668)
T COG4946 39 MKNYYLNPDIYGDRIIFTCCDD---LWEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSE 115 (668)
T ss_pred hhhhhcCCcccCcEEEEEechH---HHHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCC
Confidence 34456666532 2333333332 6776545555567888999999999999999999831 222 5566666
Q ss_pred cCcc--eeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEc--------------------cCCce---
Q 005140 243 NTFN--RLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDV--------------------RTGKV--- 297 (712)
Q Consensus 243 ~~~~--~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~--------------------~~g~~--- 297 (712)
.++ ++.-+...--.-.-|+|||..|++.....|.... -.+|.+ ..|..
T Consensus 116 -~Ge~kRiTyfGr~fT~VaG~~~dg~iiV~TD~~tPF~q~------~~lYkv~~dg~~~e~LnlGpathiv~~dg~ivig 188 (668)
T COG4946 116 -DGEAKRITYFGRRFTRVAGWIPDGEIIVSTDFHTPFSQW------TELYKVNVDGIKTEPLNLGPATHIVIKDGIIVIG 188 (668)
T ss_pred -CCcEEEEEEeccccceeeccCCCCCEEEEeccCCCcccc------eeeeEEccCCceeeeccCCceeeEEEeCCEEEEc
Confidence 443 3444443335566799999999988776554320 001111 01100
Q ss_pred -----eee---ccCCCcccc-cCCCC---------CcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcC-Cceecccccc
Q 005140 298 -----MRD---FKGSADEFA-VGGTG---------GVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETE-SFTLIDKKSL 358 (712)
Q Consensus 298 -----~~~---~~~~~~~~~-~~~~~---------~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~-~~~~~~~~~~ 358 (712)
+.. +++...... ++..+ -..-++||.+ -. +.-|+.+--+|.=.+|.++ .|+-+.+. .
T Consensus 189 RntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmI--V~-~RvYFlsD~eG~GnlYSvdldGkDlrrH-T 264 (668)
T COG4946 189 RNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMI--VG-ERVYFLSDHEGVGNLYSVDLDGKDLRRH-T 264 (668)
T ss_pred cCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceE--Ec-ceEEEEecccCccceEEeccCCchhhhc-C
Confidence 000 000000000 00000 0011224322 11 1123333335555566554 23333221 1
Q ss_pred cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcccee--ee-eee------e-eccee-E-EEC-cCCCEEE
Q 005140 359 KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELR--QK-NLF------S-VSDCK-M-YWQ-SSGDYLA 425 (712)
Q Consensus 359 ~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~-~~~------~-~~~~~-~-~~s-~~g~~l~ 425 (712)
....-.+=..+.||+.|++. ..+.||+|+..+.+.-. -. .+. . ..... + .|+ .+|.+++
T Consensus 265 nFtdYY~R~~nsDGkrIvFq--------~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia 336 (668)
T COG4946 265 NFTDYYPRNANSDGKRIVFQ--------NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIA 336 (668)
T ss_pred CchhccccccCCCCcEEEEe--------cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEE
Confidence 11122333456788888872 22347777765432111 00 000 0 00000 0 133 2677777
Q ss_pred EEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCcee
Q 005140 426 VKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVS 505 (712)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~ 505 (712)
+.+.. +.|.++...... +.+ +|.+.|.-..+.-+++-++.+..|+. .+-||+.+++.
T Consensus 337 ~VSRG------------kaFi~~~~~~~~--iqv-~~~~~VrY~r~~~~~e~~vigt~dgD--~l~iyd~~~~e------ 393 (668)
T COG4946 337 LVSRG------------KAFIMRPWDGYS--IQV-GKKGGVRYRRIQVDPEGDVIGTNDGD--KLGIYDKDGGE------ 393 (668)
T ss_pred EEecC------------cEEEECCCCCee--EEc-CCCCceEEEEEccCCcceEEeccCCc--eEEEEecCCce------
Confidence 66554 344444433332 444 66788888888888888999998884 79999997654
Q ss_pred EEEEeC--CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceee--eeccccceeeEEECCCCCEEEEEEccceecc
Q 005140 506 KLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETM--ATAEHFMATDVEWDPTGRYVATAVTSVHEME 581 (712)
Q Consensus 506 ~~~~~~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~--~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d 581 (712)
++.+. -+.|.++..+|+|++++++.. ...|.++|++++... .....+.|+.+.|+|++++||.+--+. -..
T Consensus 394 -~kr~e~~lg~I~av~vs~dGK~~vvaNd---r~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~g-y~t 468 (668)
T COG4946 394 -VKRIEKDLGNIEAVKVSPDGKKVVVAND---RFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEG-YYT 468 (668)
T ss_pred -EEEeeCCccceEEEEEcCCCcEEEEEcC---ceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcc-eee
Confidence 23333 346899999999999999987 889999999987654 345668999999999999999986520 013
Q ss_pred ccEEEEEecCceeeee--cccceeeeEEecCCCCCC
Q 005140 582 NGFNIWSFNGKLLYRT--LKDHFFQFLWRPRPPSFL 615 (712)
Q Consensus 582 ~~v~iw~~~g~~~~~~--~~~~i~~~~w~p~~~~l~ 615 (712)
..|++++..|..++.. ....-++.+|.|++++|.
T Consensus 469 q~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLY 504 (668)
T COG4946 469 QSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLY 504 (668)
T ss_pred eeEEEEecCCCeEEEecCCcccccCcccCCCCcEEE
Confidence 5889999998766654 334556678888887653
No 185
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.67 E-value=2.5e-13 Score=139.61 Aligned_cols=313 Identities=17% Similarity=0.229 Sum_probs=181.8
Q ss_pred CcEEEEEe-cCc-eEEeecccCcceeeeecCC-Ce-eEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeee
Q 005140 225 GTYLATVH-RQG-AAVWGGANTFNRLMRYAHP-QV-KLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRD 300 (712)
Q Consensus 225 g~~lat~~-~~~-i~iw~~~~~~~~~~~~~~~-~v-~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~ 300 (712)
+++++... .++ +.|.|.. +.+.+.++... .+ ..+.|+|||+++++++.+ +.|.++|+.+++.+++
T Consensus 5 ~~l~~V~~~~~~~v~viD~~-t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rd----------g~vsviD~~~~~~v~~ 73 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGA-TNKVVARIPTGGAPHAGLKFSPDGRYLYVANRD----------GTVSVIDLATGKVVAT 73 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETT-T-SEEEEEE-STTEEEEEE-TT-SSEEEEEETT----------SEEEEEETTSSSEEEE
T ss_pred ccEEEEEecCCCEEEEEECC-CCeEEEEEcCCCCceeEEEecCCCCEEEEEcCC----------CeEEEEECCcccEEEE
Confidence 34554443 344 8899999 88888888754 34 457899999999999998 8999999999999999
Q ss_pred ccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCceeccccccc-------ccCeeeEEECCC
Q 005140 301 FKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLK-------VENVMDFSWSPT 371 (712)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~sp~ 371 (712)
+....... .+++|+ ||++++.+. ++.+.++|..+.+++...... .+.+..+.-+|.
T Consensus 74 i~~G~~~~--------------~i~~s~-DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~ 138 (369)
T PF02239_consen 74 IKVGGNPR--------------GIAVSP-DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPG 138 (369)
T ss_dssp EE-SSEEE--------------EEEE---TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SS
T ss_pred EecCCCcc--------------eEEEcC-CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCC
Confidence 98877665 699999 999999887 999999999998877543221 234677888888
Q ss_pred CCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeee-ecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecC
Q 005140 372 DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFS-VSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKER 450 (712)
Q Consensus 372 ~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 450 (712)
...+++. -.....||+.+....+.+....+.. .......|+|+|+|++++.....+ +.+++....
T Consensus 139 ~~~fVv~------lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~--------i~viD~~~~ 204 (369)
T PF02239_consen 139 RPEFVVN------LKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNK--------IAVIDTKTG 204 (369)
T ss_dssp SSEEEEE------ETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTE--------EEEEETTTT
T ss_pred CCEEEEE------EccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccce--------eEEEeeccc
Confidence 8855542 2345688999876655443322211 112245799999999887554321 222222211
Q ss_pred CcceeEEEe--cCCCCceEEE-------EEee--CCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeE
Q 005140 451 DIPIEVLEL--DNKNDKIIAF-------AWEP--KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANA 517 (712)
Q Consensus 451 ~~~~~~~~l--~~h~~~v~~~-------~~sp--~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~ 517 (712)
.. ...+.. ..|..++..+ .|.. .+...+...+.. .+.+|+..+. +.+.++. +.+ .-
T Consensus 205 k~-v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~---~v~v~d~~~w------kvv~~I~~~G~g-lF 273 (369)
T PF02239_consen 205 KL-VALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTD---PVSVHDDYAW------KVVKTIPTQGGG-LF 273 (369)
T ss_dssp EE-EEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE-----TTT-STTTBT------SEEEEEE-SSSS---
T ss_pred eE-EEEeeccccccccccccccCCCcceEEeeccccceecccccCC---ccccchhhcC------eEEEEEECCCCc-ce
Confidence 10 000110 0122222222 2322 223322222222 3445555432 2555554 334 67
Q ss_pred EEEccCCCeEEEEe-ccCCCceEEEEECCcceeeeecc---ccceeeEEECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 518 LFWSPSGRFIVLAG-LKGFNGQLEFYNVDELETMATAE---HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 518 l~~spdg~~l~~~~-~~~~dg~v~iwd~~~~~~~~~~~---~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
+..+|+++++.+.. .+...+.|.++|..+.+.+.+.. ...+.++.|+++|+++..+.... ++.|.|||...
T Consensus 274 i~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~---~~~i~v~D~~T 348 (369)
T PF02239_consen 274 IKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDG---NGAIVVYDAKT 348 (369)
T ss_dssp EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE-----TTEEEEEETTT
T ss_pred eecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecC---CCEEEEEECCC
Confidence 78899999999982 12226899999999998776632 23489999999999887776621 33799999764
No 186
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.67 E-value=1.2e-12 Score=140.45 Aligned_cols=345 Identities=21% Similarity=0.326 Sum_probs=234.7
Q ss_pred EEECCeeEEEecCCCCCCCcccccCCC-cccceEEE-cCCCc-EEEEEec-Cc-eEEeecccC-cceeeee-cCC-CeeE
Q 005140 187 IRSGTDTEVLWNDARHLKPEPVYKRSY-WTESFVQW-SPLGT-YLATVHR-QG-AAVWGGANT-FNRLMRY-AHP-QVKL 258 (712)
Q Consensus 187 ~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~v~~v~~-Spdg~-~lat~~~-~~-i~iw~~~~~-~~~~~~~-~~~-~v~~ 258 (712)
....++.+.+|+..........+..+. ..+..+.+ ++++. +++..+. ++ +.+|+.. . ......+ .|. .|..
T Consensus 82 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~~v~~ 160 (466)
T COG2319 82 SGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLS-TPGKLIRTLEGHSESVTS 160 (466)
T ss_pred EecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEec-CCCeEEEEEecCcccEEE
Confidence 334578888999843332455555533 36666666 89898 4554444 66 7799998 4 4444433 344 5999
Q ss_pred EEecCCCCEEEEEcC-CCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCC-EEEE
Q 005140 259 IDFSPGEKYLVTYSS-HEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK-YFAK 336 (712)
Q Consensus 259 i~~Spdg~~l~t~s~-d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~-~la~ 336 (712)
++|+|+++++++++. + +.+++|++.++..+..+.+|...+. .+.|+| ++. ++++
T Consensus 161 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~v~-------------~~~~~~-~~~~~~~~ 216 (466)
T COG2319 161 LAFSPDGKLLASGSSLD----------GTIKLWDLRTGKPLSTLAGHTDPVS-------------SLAFSP-DGGLLIAS 216 (466)
T ss_pred EEECCCCCEEEecCCCC----------CceEEEEcCCCceEEeeccCCCceE-------------EEEEcC-CcceEEEE
Confidence 999999998888875 7 8999999988888888888776653 689999 998 5566
Q ss_pred ec-CCeEEEEEcCCceecc-cccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeeccee
Q 005140 337 LG-KNMISVYETESFTLID-KKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCK 414 (712)
Q Consensus 337 ~~-d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 414 (712)
++ |+.|.+|+...+..+. ....|...+ ...|+|++..++. ++.++.+++|....... .+.....+......
T Consensus 217 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~d~~~~~~~~~~~~~-~~~~~~~~~~~v~~ 289 (466)
T COG2319 217 GSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLAS-----GSSDGTIRLWDLRSSSS-LLRTLSGHSSSVLS 289 (466)
T ss_pred ecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEE-----ecCCCcEEEeeecCCCc-EEEEEecCCccEEE
Confidence 35 9999999888666655 344455543 3389999977776 66777777776654443 11111222344455
Q ss_pred EEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEE-EcCCCCCeEEEE
Q 005140 415 MYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVI-HGDSPRPDISFY 493 (712)
Q Consensus 415 ~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~-~~d~~~~~v~i~ 493 (712)
+.|+|++..++++..+.. +.+|++.......... ...|...+..+.|++++..++.+ ..++ .+.+|
T Consensus 290 ~~~~~~~~~~~~~~~d~~---------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~---~~~~~ 356 (466)
T COG2319 290 VAFSPDGKLLASGSSDGT---------VRLWDLETGKLLSSLT-LKGHEGPVSSLSFSPDGSLLVSGGSDDG---TIRLW 356 (466)
T ss_pred EEECCCCCEEEEeeCCCc---------EEEEEcCCCceEEEee-ecccCCceEEEEECCCCCEEEEeecCCC---cEEee
Confidence 689998888888666643 5777554433222111 23667778999994343566666 3555 78889
Q ss_pred EeecccccCceeEEEEeCCC-ceeEEEEccCCCeEEE-EeccCCCceEEEEECCcceeeeeccc--cceeeEEECCCCCE
Q 005140 494 SMRTAQHAGRVSKLTTLKGK-QANALFWSPSGRFIVL-AGLKGFNGQLEFYNVDELETMATAEH--FMATDVEWDPTGRY 569 (712)
Q Consensus 494 d~~~~~~~~~~~~~~~~~~~-~v~~l~~spdg~~l~~-~~~~~~dg~v~iwd~~~~~~~~~~~~--~~v~~~~~spdg~~ 569 (712)
++.... ........ .+..+.+++ ...++. +.. ++.+.+|+............ ..+....+++++.+
T Consensus 357 ~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (466)
T COG2319 357 DLRTGK------PLKTLEGHSNVLSVSFSP-DGRVVSSGST---DGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKS 426 (466)
T ss_pred ecCCCc------eeEEecCCceEEEEEECC-CCCEEEEecC---CCceEEEecccCeeeeeccCCCCcEEEEEECCCCcE
Confidence 986543 22222222 278899999 633333 344 89999999997776655333 68889999999999
Q ss_pred EEEEEccceeccccEEEEEecC
Q 005140 570 VATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 570 l~t~s~~~~~~d~~v~iw~~~g 591 (712)
+++++. ++.+++|+...
T Consensus 427 ~~~~~~-----~~~~~~~~~~~ 443 (466)
T COG2319 427 LASGSS-----DNTIRLWDLKT 443 (466)
T ss_pred EEEecC-----CCcEEEEeccC
Confidence 999888 89999999876
No 187
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=6.3e-14 Score=129.92 Aligned_cols=251 Identities=16% Similarity=0.255 Sum_probs=168.4
Q ss_pred cCCCcccceEEEcCCCcEEEEEecCc-eEEeecc---cCcceeeee-cCC-CeeEEEecCC--CCEEEEEcCCCCCCCcC
Q 005140 210 KRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGA---NTFNRLMRY-AHP-QVKLIDFSPG--EKYLVTYSSHEPSNPRD 281 (712)
Q Consensus 210 ~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~---~~~~~~~~~-~~~-~v~~i~~Spd--g~~l~t~s~d~~~~~~~ 281 (712)
.+|..-|.|+.|.+-|+.+||++.|+ ++|||.. +++.+.... .|. .|..+.|.+- |+.+|+++.|
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~D------- 82 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYD------- 82 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecC-------
Confidence 57888999999999999999999998 8999953 233344433 244 4999999763 8999999999
Q ss_pred CCccEEEEEEccC------C---ceeeeccCCCcccccCCCCCcCCCCcCeEEecCC-CCCEEEEec-CCeEEEEEcCCc
Q 005140 282 ANRVVINIFDVRT------G---KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGG-KDKYFAKLG-KNMISVYETESF 350 (712)
Q Consensus 282 ~~~~~I~iwd~~~------g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-dg~~la~~~-d~~i~iwd~~~~ 350 (712)
+++.||.-.. | ....++......++ .++|.|. -|-.+|+++ ||.++||++..-
T Consensus 83 ---rtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~-------------DV~FaP~hlGLklA~~~aDG~lRIYEA~dp 146 (361)
T KOG2445|consen 83 ---RTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVT-------------DVKFAPKHLGLKLAAASADGILRIYEAPDP 146 (361)
T ss_pred ---CceeeeeecccccccccceeEEEEEeecCCccee-------------EEEecchhcceEEEEeccCcEEEEEecCCc
Confidence 9999997411 1 12333433333332 6888872 355788888 999999997642
Q ss_pred e------eccccc-------ccccCeeeEEECCC---CCeEEEEeecCCCCCCCeEEEEEecCCcccee--eeeeeeecc
Q 005140 351 T------LIDKKS-------LKVENVMDFSWSPT---DPIISLFVPELGGGNQPARVSLVQIPSKEELR--QKNLFSVSD 412 (712)
Q Consensus 351 ~------~~~~~~-------~~~~~v~~~~~sp~---~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~ 412 (712)
. +..... .+.....|+.|+|. ..+||+...+.+..-+.+.||-++-..++... ...-+...+
T Consensus 147 ~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI 226 (361)
T KOG2445|consen 147 MNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPI 226 (361)
T ss_pred cccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcc
Confidence 2 111111 12234678999986 56788733222111124455555544444322 333345556
Q ss_pred eeEEECcCCC----EEEEEEcccccccccccccEEEEEEec----------------CCcceeEEE-ecCCCCceEEEEE
Q 005140 413 CKMYWQSSGD----YLAVKVDRYTKTKKSTYTGFELFRIKE----------------RDIPIEVLE-LDNKNDKIIAFAW 471 (712)
Q Consensus 413 ~~~~~s~~g~----~l~~~~~~~~~~~~~~~~~~~l~~l~~----------------~~~~~~~~~-l~~h~~~v~~~~~ 471 (712)
..+.|.|+-. .||+++.++ ++||.+.. ...++..+. +.+|++.|..+.|
T Consensus 227 ~di~wAPn~Gr~y~~lAvA~kDg----------v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~w 296 (361)
T KOG2445|consen 227 RDISWAPNIGRSYHLLAVATKDG----------VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRW 296 (361)
T ss_pred eeeeeccccCCceeeEEEeecCc----------EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEE
Confidence 6789999642 567777664 47887763 113334443 6789999999999
Q ss_pred eeCCCEEEEEEcCCCCCeEEEEEee
Q 005140 472 EPKGHRFAVIHGDSPRPDISFYSMR 496 (712)
Q Consensus 472 sp~g~~l~~~~~d~~~~~v~i~d~~ 496 (712)
+-.|..|++.+.|| .|++|...
T Consensus 297 NmtGtiLsStGdDG---~VRLWkan 318 (361)
T KOG2445|consen 297 NMTGTILSSTGDDG---CVRLWKAN 318 (361)
T ss_pred eeeeeEEeecCCCc---eeeehhhh
Confidence 99999999999999 99999874
No 188
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.66 E-value=5e-15 Score=146.57 Aligned_cols=255 Identities=13% Similarity=0.231 Sum_probs=172.7
Q ss_pred cCCCcccceEEEcCCCcEEEEEecCceEEe-ecccCcceeeeecCCCeeEEEe----c----CCCCEEEEEcCCCCCCCc
Q 005140 210 KRSYWTESFVQWSPLGTYLATVHRQGAAVW-GGANTFNRLMRYAHPQVKLIDF----S----PGEKYLVTYSSHEPSNPR 280 (712)
Q Consensus 210 ~~~~~~v~~v~~Spdg~~lat~~~~~i~iw-~~~~~~~~~~~~~~~~v~~i~~----S----pdg~~l~t~s~d~~~~~~ 280 (712)
.+|..-+.|+.|+.+...+.+++.+.+.+| ++......+...+...+....+ | .....++.++.|
T Consensus 11 ~r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~D------ 84 (737)
T KOG1524|consen 11 NRNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSND------ 84 (737)
T ss_pred cccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCC------
Confidence 366666779999988877766666666655 4442333333333222211111 1 112467778888
Q ss_pred CCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccccccc
Q 005140 281 DANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLK 359 (712)
Q Consensus 281 ~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~ 359 (712)
|.+.|.+ +.|+..+.+..|...+. +-+|+| ||.-|.+.+ ||.|++|.-..+ +-......
T Consensus 85 ----Gkf~il~-k~~rVE~sv~AH~~A~~-------------~gRW~~-dGtgLlt~GEDG~iKiWSrsGM-LRStl~Q~ 144 (737)
T KOG1524|consen 85 ----GRFVILN-KSARVERSISAHAAAIS-------------SGRWSP-DGAGLLTAGEDGVIKIWSRSGM-LRSTVVQN 144 (737)
T ss_pred ----ceEEEec-ccchhhhhhhhhhhhhh-------------hcccCC-CCceeeeecCCceEEEEeccch-HHHHHhhc
Confidence 8888887 68888888888887763 579999 999999998 999999986532 21122223
Q ss_pred ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccccc
Q 005140 360 VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTY 439 (712)
Q Consensus 360 ~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~ 439 (712)
...|.|++|.|+.+.++++ .+ +.+.|.-+ .++
T Consensus 145 ~~~v~c~~W~p~S~~vl~c-----~g-~h~~IKpL-----------------------~~n------------------- 176 (737)
T KOG1524|consen 145 EESIRCARWAPNSNSIVFC-----QG-GHISIKPL-----------------------AAN------------------- 176 (737)
T ss_pred CceeEEEEECCCCCceEEe-----cC-CeEEEeec-----------------------ccc-------------------
Confidence 3469999999998888872 11 11111000 011
Q ss_pred ccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEE-eCCCceeEE
Q 005140 440 TGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTT-LKGKQANAL 518 (712)
Q Consensus 440 ~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~-~~~~~v~~l 518 (712)
...+...+|.+-|.++.|+|.++.+++++.|- ..++||-.... +..+ .+.++|+++
T Consensus 177 --------------~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~---kfKvWD~~G~~------Lf~S~~~ey~ITSv 233 (737)
T KOG1524|consen 177 --------------SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDF---RFKIWDAQGAN------LFTSAAEEYAITSV 233 (737)
T ss_pred --------------cceeEEeccCcEEEEeecCccccceeecCCce---eEEeecccCcc------cccCChhccceeee
Confidence 11244558899999999999999999999998 89999974322 2222 235589999
Q ss_pred EEccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEc
Q 005140 519 FWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 519 ~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~ 575 (712)
+|+|+ +.+++++. .+++ +.+...+.|..++|||||..++.|+.
T Consensus 234 a~npd-~~~~v~S~----nt~R---------~~~p~~GSifnlsWS~DGTQ~a~gt~ 276 (737)
T KOG1524|consen 234 AFNPE-KDYLLWSY----NTAR---------FSSPRVGSIFNLSWSADGTQATCGTS 276 (737)
T ss_pred eeccc-cceeeeee----eeee---------ecCCCccceEEEEEcCCCceeecccc
Confidence 99999 66677764 4444 33445678889999999999999988
No 189
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=2.8e-14 Score=151.61 Aligned_cols=246 Identities=15% Similarity=0.222 Sum_probs=154.4
Q ss_pred CeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECc
Q 005140 340 NMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS 419 (712)
Q Consensus 340 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 419 (712)
..|.++|..... ......+...+.+.+|||||+.|++... .++...||++++.+.+...... .........|+|
T Consensus 176 ~~L~~~D~dG~~-~~~l~~~~~~v~~p~wSPDG~~la~~s~----~~~~~~I~~~dl~~g~~~~l~~-~~g~~~~~~~SP 249 (427)
T PRK02889 176 YQLQISDADGQN-AQSALSSPEPIISPAWSPDGTKLAYVSF----ESKKPVVYVHDLATGRRRVVAN-FKGSNSAPAWSP 249 (427)
T ss_pred cEEEEECCCCCC-ceEeccCCCCcccceEcCCCCEEEEEEc----cCCCcEEEEEECCCCCEEEeec-CCCCccceEECC
Confidence 456677664322 2222234456889999999999988421 2344679999987765432221 222334578999
Q ss_pred CCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeeccc
Q 005140 420 SGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQ 499 (712)
Q Consensus 420 ~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~ 499 (712)
+|+.|++...... ...||.++..+... ..+..+.+...+.+|+|||++|++.+..+....|+.+++.++.
T Consensus 250 DG~~la~~~~~~g--------~~~Iy~~d~~~~~~--~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~ 319 (427)
T PRK02889 250 DGRTLAVALSRDG--------NSQIYTVNADGSGL--RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA 319 (427)
T ss_pred CCCEEEEEEccCC--------CceEEEEECCCCCc--EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc
Confidence 9999987544321 25788776544332 3344455566778999999999988764332244444443322
Q ss_pred ccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEcccee
Q 005140 500 HAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHE 579 (712)
Q Consensus 500 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~ 579 (712)
...+ ++.+......+|||||++|+..+.......|++||+.+++............+.|+|||++|++++..
T Consensus 320 ----~~~l-t~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~~--- 391 (427)
T PRK02889 320 ----AQRV-TFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQQ--- 391 (427)
T ss_pred ----eEEE-ecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEec---
Confidence 1122 23333445689999999999876522134799999987665433333345688999999999998873
Q ss_pred ccc--cEEEEEecCceeeee--cccceeeeEEecC
Q 005140 580 MEN--GFNIWSFNGKLLYRT--LKDHFFQFLWRPR 610 (712)
Q Consensus 580 ~d~--~v~iw~~~g~~~~~~--~~~~i~~~~w~p~ 610 (712)
.+ .+.+.+.+|...... +.+.+...+|+|.
T Consensus 392 -~g~~~l~~~~~~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 392 -GGRSVLAAVSSDGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred -CCCEEEEEEECCCCceEEeecCCCCCCCCccCCC
Confidence 22 344556667655444 4467888999985
No 190
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=2.5e-14 Score=152.66 Aligned_cols=244 Identities=16% Similarity=0.179 Sum_probs=150.8
Q ss_pred cEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec----CCeEEEEEcCCceecccccccc
Q 005140 285 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG----KNMISVYETESFTLIDKKSLKV 360 (712)
Q Consensus 285 ~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~----d~~i~iwd~~~~~~~~~~~~~~ 360 (712)
..|.+||.. |...+.+..+...+. .++||| ||+.|++.+ ...|.+|++.++...... ...
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~-------------~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~~~~l~-~~~ 247 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPIL-------------SPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQRELVA-SFR 247 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccc-------------cccCCC-CCCEEEEEecCCCCcEEEEEECCCCCEEEec-cCC
Confidence 579999974 544455544443331 579999 999999876 346999999876542211 111
Q ss_pred cCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccc
Q 005140 361 ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 440 (712)
Q Consensus 361 ~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~ 440 (712)
.....++|+|+|+.|++.. +.++...|+++++.+..
T Consensus 248 g~~~~~~~SpDG~~l~~~~----s~~g~~~Iy~~d~~~g~---------------------------------------- 283 (433)
T PRK04922 248 GINGAPSFSPDGRRLALTL----SRDGNPEIYVMDLGSRQ---------------------------------------- 283 (433)
T ss_pred CCccCceECCCCCEEEEEE----eCCCCceEEEEECCCCC----------------------------------------
Confidence 2234677888888776521 12233344444432211
Q ss_pred cEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEE
Q 005140 441 GFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFW 520 (712)
Q Consensus 441 ~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~ 520 (712)
. ..+..+......++|+|||++|++++.......|+++++.++.. ..+. ..+.....++|
T Consensus 284 -------------~--~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~----~~lt-~~g~~~~~~~~ 343 (433)
T PRK04922 284 -------------L--TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA----ERLT-FQGNYNARASV 343 (433)
T ss_pred -------------e--EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe----EEee-cCCCCccCEEE
Confidence 1 11222333445679999999999887644333566677654331 2232 33344557899
Q ss_pred ccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCceeeee--c
Q 005140 521 SPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRT--L 598 (712)
Q Consensus 521 spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~--~ 598 (712)
||||++|+..+.......|.+||+.+++.....+......+.|+|||++|+..+.. .....+.+++..|...... +
T Consensus 344 SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~--~g~~~L~~~~~~g~~~~~l~~~ 421 (433)
T PRK04922 344 SPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATRE--GGRGVLAAVSTDGRVRQRLVSA 421 (433)
T ss_pred CCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEec--CCceEEEEEECCCCceEEcccC
Confidence 99999999876422134799999987765443333345678999999999888762 1124577778887765544 3
Q ss_pred ccceeeeEEecC
Q 005140 599 KDHFFQFLWRPR 610 (712)
Q Consensus 599 ~~~i~~~~w~p~ 610 (712)
.+.+...+|+|.
T Consensus 422 ~g~~~~p~wsp~ 433 (433)
T PRK04922 422 DGEVREPAWSPY 433 (433)
T ss_pred CCCCCCCccCCC
Confidence 456788899873
No 191
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.65 E-value=1.3e-14 Score=141.35 Aligned_cols=268 Identities=13% Similarity=0.182 Sum_probs=182.5
Q ss_pred eEEecCCCCC--EEEEec-CCeEEEEEcCCce-e---cccccccccCeeeEEECCCCC-eEEEEeecCCCCCCCeEEEEE
Q 005140 323 VFRWGGGKDK--YFAKLG-KNMISVYETESFT-L---IDKKSLKVENVMDFSWSPTDP-IISLFVPELGGGNQPARVSLV 394 (712)
Q Consensus 323 ~~~~s~~dg~--~la~~~-d~~i~iwd~~~~~-~---~~~~~~~~~~v~~~~~sp~~~-~la~~~~~~~~~~~~~~i~~~ 394 (712)
+++|.| ... ++|+|. .|.|-+||+.+.. . +-....|...|.++.|+|.+. .+.. .+.|+.++...+
T Consensus 191 ~l~fHP-t~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~s-----sSyDGtiR~~D~ 264 (498)
T KOG4328|consen 191 SLAFHP-TENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYS-----SSYDGTIRLQDF 264 (498)
T ss_pred EEEecc-cCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheee-----eccCceeeeeee
Confidence 789999 654 666666 8999999995221 1 112234667799999999753 4444 668899888877
Q ss_pred ecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeC
Q 005140 395 QIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK 474 (712)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~ 474 (712)
+....+.+....-.....+.+.++.+...++++.. ++.+.+|+++..+.....+.+ |...|.+++++|.
T Consensus 265 ~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~---------~G~f~~iD~R~~~s~~~~~~l--h~kKI~sv~~NP~ 333 (498)
T KOG4328|consen 265 EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDN---------VGNFNVIDLRTDGSEYENLRL--HKKKITSVALNPV 333 (498)
T ss_pred cchhhHHHhhcCccceeeeeccccCCCccEEEeec---------ccceEEEEeecCCccchhhhh--hhcccceeecCCC
Confidence 76655544333212222233445555555555544 334789999987776555555 6779999999995
Q ss_pred C-CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECC----cce
Q 005140 475 G-HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD----ELE 548 (712)
Q Consensus 475 g-~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~----~~~ 548 (712)
. .+||+++.|+ +++|||++....... -.+.++. .+.|++..|||.|-.|++.+. |..|+|||.. ...
T Consensus 334 ~p~~laT~s~D~---T~kIWD~R~l~~K~s-p~lst~~HrrsV~sAyFSPs~gtl~TT~~---D~~IRv~dss~~sa~~~ 406 (498)
T KOG4328|consen 334 CPWFLATASLDQ---TAKIWDLRQLRGKAS-PFLSTLPHRRSVNSAYFSPSGGTLLTTCQ---DNEIRVFDSSCISAKDE 406 (498)
T ss_pred CchheeecccCc---ceeeeehhhhcCCCC-cceecccccceeeeeEEcCCCCceEeecc---CCceEEeecccccccCC
Confidence 4 5778888898 999999987544321 1344444 347999999999888999998 9999999984 222
Q ss_pred eeeec-------cccceeeEEECCCCCEEEEEEccceeccccEEEEEecCce-eeeeccc---cee-eeEEecCCCCCCC
Q 005140 549 TMATA-------EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKL-LYRTLKD---HFF-QFLWRPRPPSFLT 616 (712)
Q Consensus 549 ~~~~~-------~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~-~~~~~~~---~i~-~~~w~p~~~~l~s 616 (712)
.+.+. .+-......|.|+-.+|+++.. ...|-|++-+|.. +...|.. .|. -..|+|....+++
T Consensus 407 p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~-----~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~a 481 (498)
T KOG4328|consen 407 PLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRY-----PRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAA 481 (498)
T ss_pred ccceeeccCcccccccchhheeCCCccEEEEecc-----CcceeEEcCCCCEEeeeccCccccccccceeecccccceec
Confidence 22221 1123446899999999999988 6789999988766 4443332 222 3589999887776
Q ss_pred hhh
Q 005140 617 PEK 619 (712)
Q Consensus 617 ~~~ 619 (712)
++.
T Consensus 482 G~~ 484 (498)
T KOG4328|consen 482 GGN 484 (498)
T ss_pred cCC
Confidence 653
No 192
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.65 E-value=5.4e-14 Score=136.73 Aligned_cols=291 Identities=15% Similarity=0.220 Sum_probs=181.9
Q ss_pred eEEEcCCCcEEEEEecCc----eEEeecccCcceeeeecCCC-----eeEEEecCC-------CCEEEEEcCCCCCCCcC
Q 005140 218 FVQWSPLGTYLATVHRQG----AAVWGGANTFNRLMRYAHPQ-----VKLIDFSPG-------EKYLVTYSSHEPSNPRD 281 (712)
Q Consensus 218 ~v~~Spdg~~lat~~~~~----i~iw~~~~~~~~~~~~~~~~-----v~~i~~Spd-------g~~l~t~s~d~~~~~~~ 281 (712)
-+..-|+..+|+++.... +-+|=.+ ....-.-.||.- ..|+.|-.. |+|+|.|..+
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn-~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmd------- 201 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYN-EEEENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMD------- 201 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEc-CCCcceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccC-------
Confidence 456778777777776432 2244333 222222234432 356666432 6799999999
Q ss_pred CCccEEEEEEccCCcee---eec----------cCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEc
Q 005140 282 ANRVVINIFDVRTGKVM---RDF----------KGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYET 347 (712)
Q Consensus 282 ~~~~~I~iwd~~~g~~~---~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~ 347 (712)
..|.|||+.-...+ -.+ .+.......+++..+- .+.|.......||+++ |.+|.+||+
T Consensus 202 ---p~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl-----~Ls~n~~~~nVLaSgsaD~TV~lWD~ 273 (463)
T KOG0270|consen 202 ---PEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVL-----ALSWNRNFRNVLASGSADKTVKLWDV 273 (463)
T ss_pred ---ceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHH-----HHHhccccceeEEecCCCceEEEEEc
Confidence 78999997321100 000 0000000011111222 2444441345889998 999999999
Q ss_pred CCceecccccccccCeeeEEECCCCC-eEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCE-EE
Q 005140 348 ESFTLIDKKSLKVENVMDFSWSPTDP-IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDY-LA 425 (712)
Q Consensus 348 ~~~~~~~~~~~~~~~v~~~~~sp~~~-~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~-l~ 425 (712)
.++++......|...|+++.|+|... +|++ |+.++.+.+.....++...... -+....-++.|.|.... ++
T Consensus 274 ~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLs-----Gs~D~~V~l~D~R~~~~s~~~w--k~~g~VEkv~w~~~se~~f~ 346 (463)
T KOG0270|consen 274 DTGKPKSSITHHGKKVQTLEWHPYEPSVLLS-----GSYDGTVALKDCRDPSNSGKEW--KFDGEVEKVAWDPHSENSFF 346 (463)
T ss_pred CCCCcceehhhcCCceeEEEecCCCceEEEe-----ccccceEEeeeccCccccCceE--EeccceEEEEecCCCceeEE
Confidence 99998877777788899999999854 5555 7778877766655433221111 13444556789987764 44
Q ss_pred EEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCC-EEEEEEcCCCCCeEEEEEeecccccCce
Q 005140 426 VKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGH-RFAVIHGDSPRPDISFYSMRTAQHAGRV 504 (712)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~-~l~~~~~d~~~~~v~i~d~~~~~~~~~~ 504 (712)
+++++++ ++-++++..+.++ .++.+|.+.|.++++++.-. .+++++.++ .|++|++...... .
T Consensus 347 ~~tddG~---------v~~~D~R~~~~~v--wt~~AHd~~ISgl~~n~~~p~~l~t~s~d~---~Vklw~~~~~~~~--~ 410 (463)
T KOG0270|consen 347 VSTDDGT---------VYYFDIRNPGKPV--WTLKAHDDEISGLSVNIQTPGLLSTASTDK---VVKLWKFDVDSPK--S 410 (463)
T ss_pred EecCCce---------EEeeecCCCCCce--eEEEeccCCcceEEecCCCCcceeeccccc---eEEEEeecCCCCc--c
Confidence 5556665 7778888777655 66778999999999998654 566777788 9999999754422 1
Q ss_pred eEEEEeCCCceeEEEEccCCCe-EEEEeccCCCceEEEEECCcceee
Q 005140 505 SKLTTLKGKQANALFWSPSGRF-IVLAGLKGFNGQLEFYNVDELETM 550 (712)
Q Consensus 505 ~~~~~~~~~~v~~l~~spdg~~-l~~~~~~~~dg~v~iwd~~~~~~~ 550 (712)
...+.+.-+...|+++.|+-.+ +++|+. .+.+++||+.+...+
T Consensus 411 v~~~~~~~~rl~c~~~~~~~a~~la~GG~---k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 411 VKEHSFKLGRLHCFALDPDVAFTLAFGGE---KAVLRVWDIFTNSPV 454 (463)
T ss_pred cccccccccceeecccCCCcceEEEecCc---cceEEEeecccChhH
Confidence 1223333334677788887654 455554 678999998865544
No 193
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=5.6e-14 Score=149.36 Aligned_cols=245 Identities=15% Similarity=0.165 Sum_probs=157.7
Q ss_pred cEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec----CCeEEEEEcCCceecccccccc
Q 005140 285 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG----KNMISVYETESFTLIDKKSLKV 360 (712)
Q Consensus 285 ~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~----d~~i~iwd~~~~~~~~~~~~~~ 360 (712)
..|.++|. +|...+.+..+...+. .++||| ||+.|++.+ ...|.+|++.++...... ...
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~-------------~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~-~~~ 239 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPII-------------SPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRVVA-NFK 239 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcc-------------cceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEEee-cCC
Confidence 46888886 5555555544443331 589999 999998876 245999999877543211 112
Q ss_pred cCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccc
Q 005140 361 ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 440 (712)
Q Consensus 361 ~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~ 440 (712)
..+...+|||||+.|++. .+.++...||.++...... ............+.|+|||++|++.+++..
T Consensus 240 g~~~~~~~SPDG~~la~~----~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g-------- 306 (427)
T PRK02889 240 GSNSAPAWSPDGRTLAVA----LSRDGNSQIYTVNADGSGL-RRLTQSSGIDTEPFFSPDGRSIYFTSDRGG-------- 306 (427)
T ss_pred CCccceEECCCCCEEEEE----EccCCCceEEEEECCCCCc-EECCCCCCCCcCeEEcCCCCEEEEEecCCC--------
Confidence 345678999999998863 2356678899988765442 221112223345689999999998765421
Q ss_pred cEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEE
Q 005140 441 GFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFW 520 (712)
Q Consensus 441 ~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~ 520 (712)
...+|.++..+.....+... .......+|||+|++|++.+.++....|.+|++.++.. ..+. .......+.|
T Consensus 307 ~~~Iy~~~~~~g~~~~lt~~--g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~----~~lt--~~~~~~~p~~ 378 (427)
T PRK02889 307 APQIYRMPASGGAAQRVTFT--GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV----TALT--DTTRDESPSF 378 (427)
T ss_pred CcEEEEEECCCCceEEEecC--CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe----EEcc--CCCCccCceE
Confidence 24688877544443344432 23345689999999999988765444799999876542 1222 2223467899
Q ss_pred ccCCCeEEEEeccCCCceEEEEECCcceee-eeccccceeeEEECCC
Q 005140 521 SPSGRFIVLAGLKGFNGQLEFYNVDELETM-ATAEHFMATDVEWDPT 566 (712)
Q Consensus 521 spdg~~l~~~~~~~~dg~v~iwd~~~~~~~-~~~~~~~v~~~~~spd 566 (712)
+|||++|++++.......+++.+++..... ...+.+.+..++|||-
T Consensus 379 spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 379 APNGRYILYATQQGGRSVLAAVSSDGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCCCCEEEEEEecCCCEEEEEEECCCCceEEeecCCCCCCCCccCCC
Confidence 999999998876332345777777533222 1234567788899984
No 194
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=9.2e-14 Score=148.51 Aligned_cols=245 Identities=13% Similarity=0.154 Sum_probs=159.4
Q ss_pred cEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec----CCeEEEEEcCCceecccccccc
Q 005140 285 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG----KNMISVYETESFTLIDKKSLKV 360 (712)
Q Consensus 285 ~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~----d~~i~iwd~~~~~~~~~~~~~~ 360 (712)
..|++||. .|...+.+..+...+. .++||| ||+.|++.+ +..|.+|++.++.... .....
T Consensus 182 ~~l~~~d~-dg~~~~~lt~~~~~v~-------------~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~~ 245 (435)
T PRK05137 182 KRLAIMDQ-DGANVRYLTDGSSLVL-------------TPRFSP-NRQEITYMSYANGRPRVYLLDLETGQREL-VGNFP 245 (435)
T ss_pred eEEEEECC-CCCCcEEEecCCCCeE-------------eeEECC-CCCEEEEEEecCCCCEEEEEECCCCcEEE-eecCC
Confidence 57999997 5555555655544432 689999 999998876 4689999998775421 11222
Q ss_pred cCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccc
Q 005140 361 ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 440 (712)
Q Consensus 361 ~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~ 440 (712)
..+...+|||||+.|++. .+.++...||.+++....... ............|+|+|++|++.+++..
T Consensus 246 g~~~~~~~SPDG~~la~~----~~~~g~~~Iy~~d~~~~~~~~-Lt~~~~~~~~~~~spDG~~i~f~s~~~g-------- 312 (435)
T PRK05137 246 GMTFAPRFSPDGRKVVMS----LSQGGNTDIYTMDLRSGTTTR-LTDSPAIDTSPSYSPDGSQIVFESDRSG-------- 312 (435)
T ss_pred CcccCcEECCCCCEEEEE----EecCCCceEEEEECCCCceEE-ccCCCCccCceeEcCCCCEEEEEECCCC--------
Confidence 346788999999988764 234566789999887654322 2222223445789999999998875422
Q ss_pred cEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEE
Q 005140 441 GFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFW 520 (712)
Q Consensus 441 ~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~ 520 (712)
...+|.++..+.....+.. +.+.+....|+|+|++|++...++....|.+|++.++.. ..+. ....+..+.|
T Consensus 313 ~~~Iy~~d~~g~~~~~lt~--~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~----~~lt--~~~~~~~p~~ 384 (435)
T PRK05137 313 SPQLYVMNADGSNPRRISF--GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE----RILT--SGFLVEGPTW 384 (435)
T ss_pred CCeEEEEECCCCCeEEeec--CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce----Eecc--CCCCCCCCeE
Confidence 1356666554444333332 345567789999999999988654434678888744321 1221 1234678999
Q ss_pred ccCCCeEEEEeccCCC---ceEEEEECCcceeeeeccccceeeEEECCC
Q 005140 521 SPSGRFIVLAGLKGFN---GQLEFYNVDELETMATAEHFMATDVEWDPT 566 (712)
Q Consensus 521 spdg~~l~~~~~~~~d---g~v~iwd~~~~~~~~~~~~~~v~~~~~spd 566 (712)
||||++|++.+..... ..|+++++.++........+.+...+|||-
T Consensus 385 spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~~~~~~~p~Wsp~ 433 (435)
T PRK05137 385 APNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVPTPGDASDPAWSPL 433 (435)
T ss_pred CCCCCEEEEEEccCCCCCcceEEEEECCCCceEEccCCCCccCcccCCC
Confidence 9999999887642211 468889988655433233345678899873
No 195
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.63 E-value=2.7e-13 Score=139.37 Aligned_cols=335 Identities=15% Similarity=0.195 Sum_probs=186.1
Q ss_pred ceE-EEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCCC-eeEE
Q 005140 183 DQF-VIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQ-VKLI 259 (712)
Q Consensus 183 ~~~-~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~-v~~i 259 (712)
+.| ++-.+++.+.+.+. ...+....+......-..+.|||||+++++++.++ +.++|+. +.+.+.++.... ..++
T Consensus 6 ~l~~V~~~~~~~v~viD~-~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~-~~~~v~~i~~G~~~~~i 83 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDG-ATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLA-TGKVVATIKVGGNPRGI 83 (369)
T ss_dssp GEEEEEEGGGTEEEEEET-TT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETT-SSSEEEEEE-SSEEEEE
T ss_pred cEEEEEecCCCEEEEEEC-CCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECC-cccEEEEEecCCCcceE
Confidence 344 44556677777777 45666666654443334578999999999999888 8899999 888888887554 8999
Q ss_pred EecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCC-EEEEec
Q 005140 260 DFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK-YFAKLG 338 (712)
Q Consensus 260 ~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~-~la~~~ 338 (712)
++||||+|++++...+ +.+.|+|..+.+.++.+......... ..+++. .+.-+| ... +++..-
T Consensus 84 ~~s~DG~~~~v~n~~~---------~~v~v~D~~tle~v~~I~~~~~~~~~-~~~Rv~-----aIv~s~-~~~~fVv~lk 147 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEP---------GTVSVIDAETLEPVKTIPTGGMPVDG-PESRVA-----AIVASP-GRPEFVVNLK 147 (369)
T ss_dssp EE--TTTEEEEEEEET---------TEEEEEETTT--EEEEEE--EE-TTT-S---EE-----EEEE-S-SSSEEEEEET
T ss_pred EEcCCCCEEEEEecCC---------CceeEeccccccceeecccccccccc-cCCCce-----eEEecC-CCCEEEEEEc
Confidence 9999999999887542 78999999999999887654322100 001111 355677 666 444445
Q ss_pred -CCeEEEEEcCCceeccccccccc-CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeee----eeeecc
Q 005140 339 -KNMISVYETESFTLIDKKSLKVE-NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKN----LFSVSD 412 (712)
Q Consensus 339 -d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~ 412 (712)
.+.|.+.|....+.+.......+ ...+..|+|++++++.. ....-.|..++..+.+.+.... .+....
T Consensus 148 d~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va------~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~ 221 (369)
T PF02239_consen 148 DTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVA------ANGSNKIAVIDTKTGKLVALIDTGKKPHPGPG 221 (369)
T ss_dssp TTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEE------EGGGTEEEEEETTTTEEEEEEE-SSSBEETTE
T ss_pred cCCeEEEEEeccccccceeeecccccccccccCcccceeeec------ccccceeEEEeeccceEEEEeecccccccccc
Confidence 58888888765543322223322 36789999999988752 2223366677766654332211 111111
Q ss_pred e-------eEEECc--CCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEE--
Q 005140 413 C-------KMYWQS--SGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVI-- 481 (712)
Q Consensus 413 ~-------~~~~s~--~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~-- 481 (712)
. ...|.. .+...+.............+.. ..+..+.. ..++ ..+..+|+++++.+.
T Consensus 222 ~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w----------kvv~~I~~--~G~g-lFi~thP~s~~vwvd~~ 288 (369)
T PF02239_consen 222 ANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAW----------KVVKTIPT--QGGG-LFIKTHPDSRYVWVDTF 288 (369)
T ss_dssp EEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBT----------SEEEEEE---SSSS---EE--TT-SEEEEE-T
T ss_pred ccccCCCcceEEeeccccceecccccCCccccchhhcC----------eEEEEEEC--CCCc-ceeecCCCCccEEeecc
Confidence 1 112322 2222222221111111111100 11122333 2333 677889999999998
Q ss_pred -EcCCCCCeEEEEEeecccccCceeEEEEeC---CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccccc
Q 005140 482 -HGDSPRPDISFYSMRTAQHAGRVSKLTTLK---GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFM 557 (712)
Q Consensus 482 -~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~---~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~ 557 (712)
+.+ ...|.++|.++.. .+.++. +..+..+.|+++|+++.++.... ++.|.+||..+.+.+....
T Consensus 289 ~~~~--~~~v~viD~~tl~------~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~-~~~i~v~D~~Tl~~~~~i~--- 356 (369)
T PF02239_consen 289 LNPD--ADTVQVIDKKTLK------VVKTITPGPGKRVVHMEFNPDGKEVWVSVWDG-NGAIVVYDAKTLKEKKRIP--- 356 (369)
T ss_dssp T-SS--HT-EEEEECCGTE------EEE-HHHHHT--EEEEEE-TTSSEEEEEEE---TTEEEEEETTTTEEEEEEE---
T ss_pred CCCC--CceEEEEECcCcc------eeEEEeccCCCcEeccEECCCCCEEEEEEecC-CCEEEEEECCCcEEEEEEE---
Confidence 333 2389999997653 455553 33588999999999988877643 5589999999999887644
Q ss_pred eeeEEECCCCCEE
Q 005140 558 ATDVEWDPTGRYV 570 (712)
Q Consensus 558 v~~~~~spdg~~l 570 (712)
.-+|.|.|.
T Consensus 357 ----~~tP~G~f~ 365 (369)
T PF02239_consen 357 ----VPTPTGKFN 365 (369)
T ss_dssp ------SEEEEEE
T ss_pred ----eeCCCeEec
Confidence 345555553
No 196
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=1.1e-13 Score=147.72 Aligned_cols=242 Identities=17% Similarity=0.166 Sum_probs=145.7
Q ss_pred eEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCC
Q 005140 236 AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGG 315 (712)
Q Consensus 236 i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~ 315 (712)
+.+||..+........+...+.++.|||||++|++++... ....|++||+.+|+.... .......
T Consensus 186 l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~-------~~~~l~~~dl~~g~~~~l-~~~~g~~------- 250 (433)
T PRK04922 186 LQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFER-------GRSAIYVQDLATGQRELV-ASFRGIN------- 250 (433)
T ss_pred EEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCC-------CCcEEEEEECCCCCEEEe-ccCCCCc-------
Confidence 6688887332333333334589999999999999887541 125799999988765332 2211111
Q ss_pred cCCCCcCeEEecCCCCCEEEEec--CC--eEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEE
Q 005140 316 VAGVSWPVFRWGGGKDKYFAKLG--KN--MISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARV 391 (712)
Q Consensus 316 ~~~~~~~~~~~s~~dg~~la~~~--d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i 391 (712)
. .++||| ||+.|+... ++ .|.+|++.++.... ...+......++|+|||+.|++... ..+...|
T Consensus 251 -----~-~~~~Sp-DG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~~~~~~~~~~spDG~~l~f~sd----~~g~~~i 318 (433)
T PRK04922 251 -----G-APSFSP-DGRRLALTLSRDGNPEIYVMDLGSRQLTR-LTNHFGIDTEPTWAPDGKSIYFTSD----RGGRPQI 318 (433)
T ss_pred -----c-CceECC-CCCEEEEEEeCCCCceEEEEECCCCCeEE-CccCCCCccceEECCCCCEEEEEEC----CCCCceE
Confidence 1 479999 999876543 33 68899988765432 2122222456778888877776211 1122233
Q ss_pred EEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEE
Q 005140 392 SLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAW 471 (712)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~ 471 (712)
+.++... .....+.. +......++|
T Consensus 319 y~~dl~~-----------------------------------------------------g~~~~lt~--~g~~~~~~~~ 343 (433)
T PRK04922 319 YRVAASG-----------------------------------------------------GSAERLTF--QGNYNARASV 343 (433)
T ss_pred EEEECCC-----------------------------------------------------CCeEEeec--CCCCccCEEE
Confidence 3333211 11111221 1223346799
Q ss_pred eeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeee
Q 005140 472 EPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA 551 (712)
Q Consensus 472 sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~ 551 (712)
||+|++|++.+.++....|.+|++.++.. ..+. .+.....+.|+|||++|++.+.....+.|+++++.+.....
T Consensus 344 SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~----~~Lt--~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~ 417 (433)
T PRK04922 344 SPDGKKIAMVHGSGGQYRIAVMDLSTGSV----RTLT--PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQR 417 (433)
T ss_pred CCCCCEEEEEECCCCceeEEEEECCCCCe----EECC--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEE
Confidence 99999999887654434789999865432 1221 12234568999999998887753334678889987543332
Q ss_pred e-ccccceeeEEECC
Q 005140 552 T-AEHFMATDVEWDP 565 (712)
Q Consensus 552 ~-~~~~~v~~~~~sp 565 (712)
. .+.+.+..++|||
T Consensus 418 l~~~~g~~~~p~wsp 432 (433)
T PRK04922 418 LVSADGEVREPAWSP 432 (433)
T ss_pred cccCCCCCCCCccCC
Confidence 2 3346678889987
No 197
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.63 E-value=4.4e-14 Score=143.07 Aligned_cols=286 Identities=11% Similarity=0.098 Sum_probs=184.5
Q ss_pred CCCCCceEEEEECCeeEEEecCCCCC-C----CcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeee-
Q 005140 178 DEKARDQFVIRSGTDTEVLWNDARHL-K----PEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMR- 250 (712)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~w~~~~~~-~----~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~- 250 (712)
.+..+..+++.-.++.+.+++..... . .......|...|..+.|-|....|+++++|. +++||+. +...+..
T Consensus 60 ~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk-~s~l~G~~ 138 (720)
T KOG0321|consen 60 APNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVK-TSRLVGGR 138 (720)
T ss_pred CCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeec-cceeecce
Confidence 34556677788888889899873211 1 1244578999999999999667889999888 7899998 5444433
Q ss_pred --ecCCC-eeEEEecCCCC-EEEEEcCCCCCCCcCCCccEEEEEEccCCce-------eeeccCCCc------ccccC--
Q 005140 251 --YAHPQ-VKLIDFSPGEK-YLVTYSSHEPSNPRDANRVVINIFDVRTGKV-------MRDFKGSAD------EFAVG-- 311 (712)
Q Consensus 251 --~~~~~-v~~i~~Spdg~-~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~-------~~~~~~~~~------~~~~~-- 311 (712)
+.|.+ |.+++|+|... .+++|+.| |.|.|||++-... .+....|.. .....
T Consensus 139 ~~~GH~~SvkS~cf~~~n~~vF~tGgRD----------g~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~ 208 (720)
T KOG0321|consen 139 LNLGHTGSVKSECFMPTNPAVFCTGGRD----------GEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIR 208 (720)
T ss_pred eecccccccchhhhccCCCcceeeccCC----------CcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccc
Confidence 45665 99999999774 67899999 9999999853220 011111111 00000
Q ss_pred ----CCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCceec------ccccc--c---ccCeeeEEECCCCCe
Q 005140 312 ----GTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLI------DKKSL--K---VENVMDFSWSPTDPI 374 (712)
Q Consensus 312 ----~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~------~~~~~--~---~~~v~~~~~sp~~~~ 374 (712)
....+.+ .. .+.+.. |+..||+++ |+.|+|||+...... ..... + .-++.++.....|.+
T Consensus 209 k~kA~s~ti~s-sv-Tvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~ 285 (720)
T KOG0321|consen 209 KWKAASNTIFS-SV-TVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTY 285 (720)
T ss_pred ccccccCceee-ee-EEEEEe-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCe
Confidence 0000011 00 145566 888999888 999999999854322 11112 2 235788888888888
Q ss_pred EEEEeecCCCCCCCeEEEEEecCCcc--ceeeeeee--eecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecC
Q 005140 375 ISLFVPELGGGNQPARVSLVQIPSKE--ELRQKNLF--SVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKER 450 (712)
Q Consensus 375 la~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~--~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 450 (712)
|... ..| ..|+.|++.+.. ++...... ....++-..+|+|.+++.++.+.. ..+|.+...
T Consensus 286 L~As-----CtD--~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~---------ayiw~vs~~ 349 (720)
T KOG0321|consen 286 LFAS-----CTD--NSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQ---------AYIWVVSSP 349 (720)
T ss_pred EEEE-----ecC--CcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcc---------eeeeeecCc
Confidence 8772 233 357777776543 22111111 011111235899999999998876 678888765
Q ss_pred CcceeEEEecCCCCceEEEEEeeC-CCEEEEEEcCCCCCeEEEEEeecc
Q 005140 451 DIPIEVLELDNKNDKIIAFAWEPK-GHRFAVIHGDSPRPDISFYSMRTA 498 (712)
Q Consensus 451 ~~~~~~~~l~~h~~~v~~~~~sp~-g~~l~~~~~d~~~~~v~i~d~~~~ 498 (712)
..+. ..+.+|...|++++|.|. -.-+++++.|. .++||++..+
T Consensus 350 e~~~--~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~---~~kiW~l~~~ 393 (720)
T KOG0321|consen 350 EAPP--ALLLGHTREVTTVRWLPSATTPVATCSDDF---RVKIWRLSNG 393 (720)
T ss_pred cCCh--hhhhCcceEEEEEeeccccCCCceeeccCc---ceEEEeccCc
Confidence 4443 445689999999999983 34566668888 8999999653
No 198
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=3.7e-15 Score=161.00 Aligned_cols=244 Identities=16% Similarity=0.277 Sum_probs=167.3
Q ss_pred ccceEEEcCCCcE----EEEEecCc-eEEeecccCc------ceeeee--cCCCeeEEEecCCCC-EEEEEcCCCCCCCc
Q 005140 215 TESFVQWSPLGTY----LATVHRQG-AAVWGGANTF------NRLMRY--AHPQVKLIDFSPGEK-YLVTYSSHEPSNPR 280 (712)
Q Consensus 215 ~v~~v~~Spdg~~----lat~~~~~-i~iw~~~~~~------~~~~~~--~~~~v~~i~~Spdg~-~l~t~s~d~~~~~~ 280 (712)
.-+.++|++.|.. ||.|..|| |.+|+.. .. ..+.++ |+..|..+.|++.+. .||+|+.+
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~-~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~------ 138 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPA-SIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADD------ 138 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecch-hhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCC------
Confidence 4467999998876 88899999 8899987 32 123333 344599999999865 99999999
Q ss_pred CCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccccccc
Q 005140 281 DANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLK 359 (712)
Q Consensus 281 ~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~ 359 (712)
|.|.|||+..-+.-.++... ...+.+. +++|+.+....||+++ +|.+.|||++..+.+-+...+
T Consensus 139 ----geI~iWDlnn~~tP~~~~~~------~~~~eI~-----~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~ 203 (1049)
T KOG0307|consen 139 ----GEILIWDLNKPETPFTPGSQ------APPSEIK-----CLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDT 203 (1049)
T ss_pred ----CcEEEeccCCcCCCCCCCCC------CCcccce-----EeccchhhhHHhhccCCCCCceeccccCCCcccccccC
Confidence 99999998654332222111 0011112 6788763456788888 889999999966555333222
Q ss_pred cc--CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccc
Q 005140 360 VE--NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKS 437 (712)
Q Consensus 360 ~~--~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~ 437 (712)
.. .+..++|+|++.. .|++++++..
T Consensus 204 ~~~~~~S~l~WhP~~aT------------------------------------------------ql~~As~dd~----- 230 (1049)
T KOG0307|consen 204 PGRMHCSVLAWHPDHAT------------------------------------------------QLLVASGDDS----- 230 (1049)
T ss_pred CCccceeeeeeCCCCce------------------------------------------------eeeeecCCCC-----
Confidence 22 2556666666422 2222222221
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCC-CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC--Cc
Q 005140 438 TYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG-HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG--KQ 514 (712)
Q Consensus 438 ~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g-~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~ 514 (712)
...+.+|+++....|... +.+|...|.++.|++.+ +++++++.|+ .|.+|+.+++. .+..+.. ..
T Consensus 231 -~PviqlWDlR~assP~k~--~~~H~~GilslsWc~~D~~lllSsgkD~---~ii~wN~~tgE------vl~~~p~~~nW 298 (1049)
T KOG0307|consen 231 -APVIQLWDLRFASSPLKI--LEGHQRGILSLSWCPQDPRLLLSSGKDN---RIICWNPNTGE------VLGELPAQGNW 298 (1049)
T ss_pred -CceeEeecccccCCchhh--hcccccceeeeccCCCCchhhhcccCCC---CeeEecCCCce------EeeecCCCCcc
Confidence 112678888876666533 46899999999999966 7777777788 89999998765 6666663 46
Q ss_pred eeEEEEccCCC-eEEEEeccCCCceEEEEECCcce
Q 005140 515 ANALFWSPSGR-FIVLAGLKGFNGQLEFYNVDELE 548 (712)
Q Consensus 515 v~~l~~spdg~-~l~~~~~~~~dg~v~iwd~~~~~ 548 (712)
+..+.|.|..- .+++++. +|.|.||.+.++.
T Consensus 299 ~fdv~w~pr~P~~~A~asf---dgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 299 CFDVQWCPRNPSVMAAASF---DGKISIYSLQGTD 330 (1049)
T ss_pred eeeeeecCCCcchhhhhee---ccceeeeeeecCC
Confidence 88999999776 6666776 9999999988544
No 199
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=6.3e-13 Score=140.46 Aligned_cols=252 Identities=12% Similarity=0.075 Sum_probs=149.1
Q ss_pred cEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCE--EEEec--C--CeEEEEEcCCceecccccc
Q 005140 285 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY--FAKLG--K--NMISVYETESFTLIDKKSL 358 (712)
Q Consensus 285 ~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~--la~~~--d--~~i~iwd~~~~~~~~~~~~ 358 (712)
..|.+.|...+. .+.+........ ..+||| ||+. ++..+ + ..|.+.++.++...... .
T Consensus 165 ~~l~~~d~dG~~-~~~lt~~~~~~~-------------sP~wSP-DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~ 228 (428)
T PRK01029 165 GELWSVDYDGQN-LRPLTQEHSLSI-------------TPTWMH-IGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-A 228 (428)
T ss_pred ceEEEEcCCCCC-ceEcccCCCCcc-------------cceEcc-CCCceEEEEEEccCCCceEEEEECCCCCceEee-c
Confidence 578888874443 444444332221 469999 9975 33333 3 35777787766532211 1
Q ss_pred cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc--cceeeee-eeeecceeEEECcCCCEEEEEEccccccc
Q 005140 359 KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK--EELRQKN-LFSVSDCKMYWQSSGDYLAVKVDRYTKTK 435 (712)
Q Consensus 359 ~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~-~~~~~~~~~~~s~~g~~l~~~~~~~~~~~ 435 (712)
........+|||||+.|++..... +.....+..|++... ....... ..........|+|||+.|++.++...
T Consensus 229 ~~g~~~~p~wSPDG~~Laf~s~~~--g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g--- 303 (428)
T PRK01029 229 LQGNQLMPTFSPRKKLLAFISDRY--GNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDG--- 303 (428)
T ss_pred CCCCccceEECCCCCEEEEEECCC--CCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCC---
Confidence 122345689999999999853222 222333433554432 1111111 11122345789999999998775421
Q ss_pred ccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCce
Q 005140 436 KSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQA 515 (712)
Q Consensus 436 ~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v 515 (712)
...+|.+...........+..+...+...+|||||++|++.+.+.....|.+||+.++.. ..+... ...+
T Consensus 304 -----~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~----~~Lt~~-~~~~ 373 (428)
T PRK01029 304 -----RPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD----YQLTTS-PENK 373 (428)
T ss_pred -----CceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe----EEccCC-CCCc
Confidence 135666543211111233434455677899999999999987754445899999876542 122211 2346
Q ss_pred eEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee-ccccceeeEEECCCC
Q 005140 516 NALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-AEHFMATDVEWDPTG 567 (712)
Q Consensus 516 ~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~-~~~~~v~~~~~spdg 567 (712)
..+.|+|||++|++.........|+++|+.+++.... ...+.+...+|||-.
T Consensus 374 ~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 374 ESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred cceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence 7799999999988765433357899999987665433 233556788999854
No 200
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.61 E-value=9.6e-14 Score=132.11 Aligned_cols=202 Identities=15% Similarity=0.230 Sum_probs=143.9
Q ss_pred eeEEEecCCC--CEEEEEcCCCCCCCcCCCccEEEEEEccC----------------CceeeeccCCCcccccCCCCCcC
Q 005140 256 VKLIDFSPGE--KYLVTYSSHEPSNPRDANRVVINIFDVRT----------------GKVMRDFKGSADEFAVGGTGGVA 317 (712)
Q Consensus 256 v~~i~~Spdg--~~l~t~s~d~~~~~~~~~~~~I~iwd~~~----------------g~~~~~~~~~~~~~~~~~~~~~~ 317 (712)
+..+.-++-| .+.++.+.. |.|.||++.. .+++.++.+|...-
T Consensus 154 ~NRvr~~~~~~~~~~aswse~----------G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EG--------- 214 (440)
T KOG0302|consen 154 INRVRVSRLGNEVLCASWSEN----------GRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEG--------- 214 (440)
T ss_pred cceeeecccCCcceeeeeccc----------CcEEEEEchhhhhhhcCccccccccccCceEEecccCccc---------
Confidence 6666666544 455666666 8899999732 23456666666443
Q ss_pred CCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecc---cccccccCeeeEEECCCC-CeEEEEeecCCCCCCCeEEE
Q 005140 318 GVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLID---KKSLKVENVMDFSWSPTD-PIISLFVPELGGGNQPARVS 392 (712)
Q Consensus 318 ~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~---~~~~~~~~v~~~~~sp~~-~~la~~~~~~~~~~~~~~i~ 392 (712)
+ .+.|||.....|+++. -+.|++|...++.-.. ....|...|.+++|||.. ..+++ ++.|+.++||
T Consensus 215 ---y-~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaS-----cS~DgsIrIW 285 (440)
T KOG0302|consen 215 ---Y-GLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFAS-----CSCDGSIRIW 285 (440)
T ss_pred ---e-eeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEe-----eecCceEEEE
Confidence 2 5899983222466666 7889999988765321 223477789999999985 45566 7889999988
Q ss_pred EEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEe
Q 005140 393 LVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWE 472 (712)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~s 472 (712)
.......+.....+.+......+.|+..-.+|+++.++++ +.||+|+.-......-.+.-|..+|+++.|+
T Consensus 286 DiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt---------~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~ 356 (440)
T KOG0302|consen 286 DIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGT---------LSIWDLRQFKSGQPVATFKYHKAPITSIEWH 356 (440)
T ss_pred EecCCCccceeEeeccCCceeeEEccCCcceeeecCCCce---------EEEEEhhhccCCCcceeEEeccCCeeEEEec
Confidence 8776644433333556666667799998889999999988 8999998754333334566699999999999
Q ss_pred eC-CCEEEEEEcCCCCCeEEEEEeec
Q 005140 473 PK-GHRFAVIHGDSPRPDISFYSMRT 497 (712)
Q Consensus 473 p~-g~~l~~~~~d~~~~~v~i~d~~~ 497 (712)
|. ...|++++.|. +|.|||+..
T Consensus 357 p~e~s~iaasg~D~---QitiWDlsv 379 (440)
T KOG0302|consen 357 PHEDSVIAASGEDN---QITIWDLSV 379 (440)
T ss_pred cccCceEEeccCCC---cEEEEEeec
Confidence 94 56677777777 899999964
No 201
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.60 E-value=7e-14 Score=126.84 Aligned_cols=291 Identities=14% Similarity=0.198 Sum_probs=179.6
Q ss_pred eeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecC
Q 005140 249 MRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGG 328 (712)
Q Consensus 249 ~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 328 (712)
.+-++..|+++.|-.+++ |.+|... |.|++|++.+.+.+..+..+.... +. .++-.|
T Consensus 10 LRp~~~~v~s~~fqa~~r-L~sg~~~----------G~V~~w~lqt~r~~~~~r~~g~~~----------it--~lq~~p 66 (323)
T KOG0322|consen 10 LRPHSSSVTSVLFQANER-LMSGLSV----------GIVKMWVLQTERDLPLIRLFGRLF----------IT--NLQSIP 66 (323)
T ss_pred eccccchheehhhccchh-hhccccc----------ceEEEEEeecCccchhhhhhccce----------ee--ceeecC
Confidence 333455699999988876 8888888 999999999998888888544332 01 355566
Q ss_pred CCCCEEEEec-CCeEEEEEcCCceeccccccccc--CeeeEEECCCCC---eEEEEeecCCCCCCCeEEEEEecCCccce
Q 005140 329 GKDKYFAKLG-KNMISVYETESFTLIDKKSLKVE--NVMDFSWSPTDP---IISLFVPELGGGNQPARVSLVQIPSKEEL 402 (712)
Q Consensus 329 ~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~--~v~~~~~sp~~~---~la~~~~~~~~~~~~~~i~~~~~~~~~~~ 402 (712)
++ .+.+-+ |..+.+|++..+..+...++... +..-+++++.++ .++.+ +..++. . +...+.+....+
T Consensus 67 -~d-~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~y-p~rgsd-e---~h~~D~g~~tqv 139 (323)
T KOG0322|consen 67 -ND-SLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEY-PSRGSD-E---THKQDGGDTTQV 139 (323)
T ss_pred -Cc-chhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheec-CCcccc-h---hhhhccCcccee
Confidence 54 455555 99999999986544322221111 122223333322 12221 111100 0 111121111111
Q ss_pred eee---eee-eecceeEEEC-cCCCEE--EEEEcccccccccccccEEEEEEecCCcce-------eEEEecCCCCceEE
Q 005140 403 RQK---NLF-SVSDCKMYWQ-SSGDYL--AVKVDRYTKTKKSTYTGFELFRIKERDIPI-------EVLELDNKNDKIIA 468 (712)
Q Consensus 403 ~~~---~~~-~~~~~~~~~s-~~g~~l--~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-------~~~~l~~h~~~v~~ 468 (712)
... ... ........|. ..++++ +++...+ .+.+|++......+ .......|..+|.+
T Consensus 140 ~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsg---------hvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvls 210 (323)
T KOG0322|consen 140 QIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESG---------HVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLS 210 (323)
T ss_pred EccCchhccccCceeeeeccccccceEEEEEeccCC---------eEEEEEccCCceeeccccccccccchhhccCccee
Confidence 100 000 0111122222 234433 3333333 37899988742211 11123368899999
Q ss_pred EEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcce
Q 005140 469 FAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELE 548 (712)
Q Consensus 469 ~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~ 548 (712)
+.+.+.-..=++++.+. .+..|+++...+.........+.+..+..+.+-||++.+++++. |+.|++|+.+++.
T Consensus 211 ldyas~~~rGisgga~d---kl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGW---D~RiRVyswrtl~ 284 (323)
T KOG0322|consen 211 LDYASSCDRGISGGADD---KLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGW---DHRIRVYSWRTLN 284 (323)
T ss_pred eeechhhcCCcCCCccc---cceeeeeccccCcccccceEEecCCCccceEEccCCcEEeeccc---CCcEEEEEeccCC
Confidence 99987555545555544 78889887544433333455566667899999999999999999 9999999999998
Q ss_pred eeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEe
Q 005140 549 TMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSF 589 (712)
Q Consensus 549 ~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~ 589 (712)
.++. .|...|++++|+|+...+|.++. |..|.+|++
T Consensus 285 pLAVLkyHsagvn~vAfspd~~lmAaask-----D~rISLWkL 322 (323)
T KOG0322|consen 285 PLAVLKYHSAGVNAVAFSPDCELMAAASK-----DARISLWKL 322 (323)
T ss_pred chhhhhhhhcceeEEEeCCCCchhhhccC-----CceEEeeec
Confidence 8764 78899999999999999999999 999999985
No 202
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=2.6e-13 Score=131.61 Aligned_cols=198 Identities=20% Similarity=0.299 Sum_probs=134.3
Q ss_pred eEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccc
Q 005140 323 VFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE 401 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~ 401 (712)
+++|++ +|..+++++ ||+++||+.++...+.....|...|.++.|||||++|++ -+.+ .++||..+. ...
T Consensus 149 ~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~las-----ig~d-~~~VW~~~~--g~~ 219 (398)
T KOG0771|consen 149 VVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLAS-----IGAD-SARVWSVNT--GAA 219 (398)
T ss_pred EEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEE-----ecCC-ceEEEEecc--Cch
Confidence 689999 999999999 999999999988877666677888999999999999999 5555 667665432 211
Q ss_pred eeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCC---CE-
Q 005140 402 LRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG---HR- 477 (712)
Q Consensus 402 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g---~~- 477 (712)
+..+..+ ..+.....+.|+.++ .+
T Consensus 220 ~a~~t~~----------------------------------------------------~k~~~~~~cRF~~d~~~~~l~ 247 (398)
T KOG0771|consen 220 LARKTPF----------------------------------------------------SKDEMFSSCRFSVDNAQETLR 247 (398)
T ss_pred hhhcCCc----------------------------------------------------ccchhhhhceecccCCCceEE
Confidence 1111100 001112222333322 11
Q ss_pred EEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeee---ec
Q 005140 478 FAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA---TA 553 (712)
Q Consensus 478 l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~---~~ 553 (712)
+++....+ ..|..|++.......-...-+.+. ...+++++.|++|++++.|+. +|.|.|++..+.+.+. ..
T Consensus 248 laa~~~~~--~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~---dGsVai~~~~~lq~~~~vk~a 322 (398)
T KOG0771|consen 248 LAASQFPG--GGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM---DGSVAIYDAKSLQRLQYVKEA 322 (398)
T ss_pred EEEecCCC--CceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc---CCcEEEEEeceeeeeEeehhh
Confidence 12211222 145555554322210011111222 237899999999999999998 9999999998777655 47
Q ss_pred cccceeeEEECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 554 EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 554 ~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
|...|+.+.|+||.+++++.+. ++...|..+..
T Consensus 323 H~~~VT~ltF~Pdsr~~~svSs-----~~~~~v~~l~v 355 (398)
T KOG0771|consen 323 HLGFVTGLTFSPDSRYLASVSS-----DNEAAVTKLAV 355 (398)
T ss_pred heeeeeeEEEcCCcCccccccc-----CCceeEEEEee
Confidence 8899999999999999999888 89999888764
No 203
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=9.1e-13 Score=124.93 Aligned_cols=309 Identities=12% Similarity=0.145 Sum_probs=176.6
Q ss_pred ccceEEEcCCCcEEEEEecCc-eEEeecccCcceeee-ecCCCeeEEEecCCC-CEEEEEcCCCCCCCcCCCccEEEEEE
Q 005140 215 TESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMR-YAHPQVKLIDFSPGE-KYLVTYSSHEPSNPRDANRVVINIFD 291 (712)
Q Consensus 215 ~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~-~~~~~v~~i~~Spdg-~~l~t~s~d~~~~~~~~~~~~I~iwd 291 (712)
.+..++|++.=.-+|++..|. |++|+-..+...+.+ ....+|.+++|-|.+ +-|+.+... -|.||.
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~-----------gIciW~ 168 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-----------GICIWS 168 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecc-----------eeEEEE
Confidence 456789998666677777777 789988722222222 234469999999965 567777766 489998
Q ss_pred ccC-C---ceeeeccCCCccccc-CCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCee
Q 005140 292 VRT-G---KVMRDFKGSADEFAV-GGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVM 364 (712)
Q Consensus 292 ~~~-g---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~ 364 (712)
... + +.++-...+...+.. .++..|+ +++|.+ ||..+++++ +..|.|||.+++..+.-.....+++.
T Consensus 169 ~s~tln~~r~~~~~s~~~~qvl~~pgh~pVt-----smqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~s 242 (445)
T KOG2139|consen 169 DSRTLNANRNIRMMSTHHLQVLQDPGHNPVT-----SMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFS 242 (445)
T ss_pred cCcccccccccccccccchhheeCCCCceee-----EEEEcC-CCCEEeecccCcceEEEEcCCCCCcccccccCCCcee
Confidence 632 1 112211222222110 0111112 799999 999999998 89999999999887765556677899
Q ss_pred eEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEE
Q 005140 365 DFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFEL 444 (712)
Q Consensus 365 ~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l 444 (712)
-+.|||||.+|.. +.-|...++|.-. .................-.|+|.|++|++...... .+
T Consensus 243 lLkwSPdgd~lfa-----At~davfrlw~e~--q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp----------~l 305 (445)
T KOG2139|consen 243 LLKWSPDGDVLFA-----ATCDAVFRLWQEN--QSWTKERWILGSGRVQTACWSPCGSFLLFACSGSP----------RL 305 (445)
T ss_pred eEEEcCCCCEEEE-----ecccceeeeehhc--ccceecceeccCCceeeeeecCCCCEEEEEEcCCc----------eE
Confidence 9999999999987 5567777766221 11100111112223333468888888877665433 45
Q ss_pred EEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCC
Q 005140 445 FRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSG 524 (712)
Q Consensus 445 ~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg 524 (712)
|.+.-.+.+. ...-.++.-. .+-+-|+..-... .-..+-.+.+.+++|.|.|
T Consensus 306 ysl~f~~~~~---------------------~~~~~~~~k~---~lliaDL~e~ti~----ag~~l~cgeaq~lawDpsG 357 (445)
T KOG2139|consen 306 YSLTFDGEDS---------------------VFLRPQSIKR---VLLIADLQEVTIC----AGQRLCCGEAQCLAWDPSG 357 (445)
T ss_pred EEEeecCCCc---------------------cccCccccee---eeeeccchhhhhh----cCcccccCccceeeECCCC
Confidence 5543221110 0000000001 2233343211100 0122335578899999999
Q ss_pred CeEEEEeccC-----CCceEEEEECCcceeeee-----ccccceeeEEECC---CCCEEEEEEccceeccccEEEEEec
Q 005140 525 RFIVLAGLKG-----FNGQLEFYNVDELETMAT-----AEHFMATDVEWDP---TGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 525 ~~l~~~~~~~-----~dg~v~iwd~~~~~~~~~-----~~~~~v~~~~~sp---dg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
.+|++.-.+. ..+.|.+||....-.+.. ........++|+| +|+.|..+-+ .|.+.-|.+.
T Consensus 358 eyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWs-----TGriq~ypl~ 431 (445)
T KOG2139|consen 358 EYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWS-----TGRIQRYPLT 431 (445)
T ss_pred CEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEec-----cCceEeeeeE
Confidence 9999987643 123456677664322221 1112234455655 5666666655 5777777654
No 204
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=8.9e-13 Score=140.54 Aligned_cols=247 Identities=14% Similarity=0.202 Sum_probs=153.2
Q ss_pred eEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcC
Q 005140 341 MISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSS 420 (712)
Q Consensus 341 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 420 (712)
.|.++|....... ........+....|||||+.|++... .++...||++++.+.+...... .......+.|+|+
T Consensus 199 ~l~i~d~dG~~~~-~l~~~~~~~~~p~wSPDG~~La~~s~----~~g~~~L~~~dl~tg~~~~lt~-~~g~~~~~~wSPD 272 (448)
T PRK04792 199 QLMIADYDGYNEQ-MLLRSPEPLMSPAWSPDGRKLAYVSF----ENRKAEIFVQDIYTQVREKVTS-FPGINGAPRFSPD 272 (448)
T ss_pred EEEEEeCCCCCce-EeecCCCcccCceECCCCCEEEEEEe----cCCCcEEEEEECCCCCeEEecC-CCCCcCCeeECCC
Confidence 5666676543321 11122345788999999999987432 3445689999987654322211 1222335689999
Q ss_pred CCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccc
Q 005140 421 GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQH 500 (712)
Q Consensus 421 g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~ 500 (712)
|+.|++...... ...||.++..+... ..+..+.......+|+|||++|++.+..+....|+++++.++..
T Consensus 273 G~~La~~~~~~g--------~~~Iy~~dl~tg~~--~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~ 342 (448)
T PRK04792 273 GKKLALVLSKDG--------QPEIYVVDIATKAL--TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV 342 (448)
T ss_pred CCEEEEEEeCCC--------CeEEEEEECCCCCe--EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 999987654321 24566665444333 23444455667899999999999887654434677777755432
Q ss_pred cCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEccceec
Q 005140 501 AGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEM 580 (712)
Q Consensus 501 ~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~ 580 (712)
..+. ..+......+|||||++|++.+.......|.++|+.+++..............|+|||++|+..+.. ..
T Consensus 343 ----~~Lt-~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~--~g 415 (448)
T PRK04792 343 ----SRLT-FEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIYSTTY--QG 415 (448)
T ss_pred ----EEEe-cCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEEEEec--CC
Confidence 2222 2333345679999999998876532223567788887654332222223356899999999888762 00
Q ss_pred cccEEEEEecCceeeee--cccceeeeEEecC
Q 005140 581 ENGFNIWSFNGKLLYRT--LKDHFFQFLWRPR 610 (712)
Q Consensus 581 d~~v~iw~~~g~~~~~~--~~~~i~~~~w~p~ 610 (712)
...+.+++.+|...... +.+.+...+|+|.
T Consensus 416 ~~~l~~~~~~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 416 KQVLAAVSIDGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred ceEEEEEECCCCceEECcCCCCCcCCCccCCC
Confidence 12367778888766554 3356788899984
No 205
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.4e-12 Score=139.12 Aligned_cols=258 Identities=12% Similarity=0.060 Sum_probs=153.0
Q ss_pred EEcCCCcEEEEEecCc----eEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC
Q 005140 220 QWSPLGTYLATVHRQG----AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG 295 (712)
Q Consensus 220 ~~Spdg~~lat~~~~~----i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g 295 (712)
.|+....|+......+ +.++|..+...+........+.+..|||||++|+..+... ....|++||+.+|
T Consensus 180 ~f~~riayv~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~-------g~~~L~~~dl~tg 252 (448)
T PRK04792 180 AFLTRIAYVVVNDKDKYPYQLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFEN-------RKAEIFVQDIYTQ 252 (448)
T ss_pred cccCEEEEEEeeCCCCCceEEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecC-------CCcEEEEEECCCC
Confidence 3444444444433322 4566776333333333334588999999999999876541 1147999999887
Q ss_pred ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CC--eEEEEEcCCceecccccccccCeeeEEECCC
Q 005140 296 KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KN--MISVYETESFTLIDKKSLKVENVMDFSWSPT 371 (712)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~ 371 (712)
+............ .+.||| ||+.|+... ++ .|.++++.++.... ...+.......+|+||
T Consensus 253 ~~~~lt~~~g~~~--------------~~~wSP-DG~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~~~~~~p~wSpD 316 (448)
T PRK04792 253 VREKVTSFPGING--------------APRFSP-DGKKLALVLSKDGQPEIYVVDIATKALTR-ITRHRAIDTEPSWHPD 316 (448)
T ss_pred CeEEecCCCCCcC--------------CeeECC-CCCEEEEEEeCCCCeEEEEEECCCCCeEE-CccCCCCccceEECCC
Confidence 6532221111111 479999 999887654 55 47777887665432 2222234567899999
Q ss_pred CCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCC
Q 005140 372 DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERD 451 (712)
Q Consensus 372 ~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~ 451 (712)
|+.|++.. ..++...||.++..+.+.... ...........|+|+|++|++...... ...+|.++..+
T Consensus 317 G~~I~f~s----~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~~~~SpDG~~l~~~~~~~g--------~~~I~~~dl~~ 383 (448)
T PRK04792 317 GKSLIFTS----ERGGKPQIYRVNLASGKVSRL-TFEGEQNLGGSITPDGRSMIMVNRTNG--------KFNIARQDLET 383 (448)
T ss_pred CCEEEEEE----CCCCCceEEEEECCCCCEEEE-ecCCCCCcCeeECCCCCEEEEEEecCC--------ceEEEEEECCC
Confidence 99988742 234556888888876543221 111122234589999999988765422 24566665444
Q ss_pred cceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEe--CCCceeEEEEccC
Q 005140 452 IPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL--KGKQANALFWSPS 523 (712)
Q Consensus 452 ~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~--~~~~v~~l~~spd 523 (712)
.....+. . .......+|+|+|+.|++.+.++....+.+++.... ....+ ....+..++|||-
T Consensus 384 g~~~~lt--~-~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~-------~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 384 GAMQVLT--S-TRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR-------FKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred CCeEEcc--C-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-------ceEECcCCCCCcCCCccCCC
Confidence 3332222 1 122335689999999999887655445777776322 12223 2345678889883
No 206
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.55 E-value=2.5e-14 Score=125.19 Aligned_cols=81 Identities=21% Similarity=0.332 Sum_probs=73.8
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
..+++|||+|||. +..+++|+++|++||.|.. +.|+.|+.|+++||||||+|+++++|++|++.|||..+++
T Consensus 32 ~~~~~lfVgnL~~------~~te~~L~~~F~~~G~I~~--v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~G 103 (144)
T PLN03134 32 LMSTKLFIGGLSW------GTDDASLRDAFAHFGDVVD--AKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNG 103 (144)
T ss_pred CCCCEEEEeCCCC------CCCHHHHHHHHhcCCCeEE--EEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3578999999997 4559999999999999999 9999999999999999999999999999999999999998
Q ss_pred ceEEEEEeec
Q 005140 137 AHIFAVNMFD 146 (712)
Q Consensus 137 ~~~l~v~~~~ 146 (712)
+ .++|....
T Consensus 104 r-~l~V~~a~ 112 (144)
T PLN03134 104 R-HIRVNPAN 112 (144)
T ss_pred E-EEEEEeCC
Confidence 5 78877643
No 207
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=2.8e-12 Score=135.52 Aligned_cols=248 Identities=10% Similarity=0.038 Sum_probs=142.3
Q ss_pred eEEeecccCcceeeeecCCCeeEEEecCCCCE--EEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCC
Q 005140 236 AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKY--LVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGT 313 (712)
Q Consensus 236 i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~--l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~ 313 (712)
+.+.|.++...+..+.....+.+..|||||+. ++..+... +...|.+.++.+|+..+.........
T Consensus 167 l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~-------g~~~I~~~~l~~g~~~~lt~~~g~~~----- 234 (428)
T PRK01029 167 LWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKL-------GVPKIFLGSLENPAGKKILALQGNQL----- 234 (428)
T ss_pred EEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccC-------CCceEEEEECCCCCceEeecCCCCcc-----
Confidence 44556663333333333334788999999986 33233321 11478999998776433222222222
Q ss_pred CCcCCCCcCeEEecCCCCCEEEEec--CC--e--EEEEEcCCce--ecccccc-cccCeeeEEECCCCCeEEEEeecCCC
Q 005140 314 GGVAGVSWPVFRWGGGKDKYFAKLG--KN--M--ISVYETESFT--LIDKKSL-KVENVMDFSWSPTDPIISLFVPELGG 384 (712)
Q Consensus 314 ~~~~~~~~~~~~~s~~dg~~la~~~--d~--~--i~iwd~~~~~--~~~~~~~-~~~~v~~~~~sp~~~~la~~~~~~~~ 384 (712)
..+||| ||+.|+... +| . +.+|++..+. ....... ........+|||||+.|++.. .
T Consensus 235 ---------~p~wSP-DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s----~ 300 (428)
T PRK01029 235 ---------MPTFSP-RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVS----N 300 (428)
T ss_pred ---------ceEECC-CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEE----C
Confidence 479999 999998766 23 2 3346665431 1111111 112346789999999998742 1
Q ss_pred CCCCeEEEEEecCC-ccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCC
Q 005140 385 GNQPARVSLVQIPS-KEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKN 463 (712)
Q Consensus 385 ~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~ 463 (712)
.++...||++++.. ................+.|+|+|+.|++...... ...+.+|++.. .... .+....
T Consensus 301 ~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g------~~~I~v~dl~~--g~~~--~Lt~~~ 370 (428)
T PRK01029 301 KDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKG------VRQICVYDLAT--GRDY--QLTTSP 370 (428)
T ss_pred CCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCC------CcEEEEEECCC--CCeE--EccCCC
Confidence 34556788887643 2222222222223346789999999998776432 12244554433 3222 232233
Q ss_pred CceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCC
Q 005140 464 DKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSG 524 (712)
Q Consensus 464 ~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg 524 (712)
..+.++.|+|||+.|++....+....|.++++.++.. ..+.. ....+...+|||-.
T Consensus 371 ~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~----~~Lt~-~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 371 ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT----RKIVI-GSGEKRFPSWGAFP 426 (428)
T ss_pred CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE----EEeec-CCCcccCceecCCC
Confidence 4667899999999999877654444788888865442 23332 23346788999864
No 208
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.54 E-value=2.7e-14 Score=148.52 Aligned_cols=271 Identities=14% Similarity=0.181 Sum_probs=186.2
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC
Q 005140 252 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 331 (712)
Q Consensus 252 ~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg 331 (712)
|...|.|+.|...|.|+++|+.| ..++||...++.++.+..+|...++ .++.+. +.
T Consensus 189 H~naVyca~fDrtg~~Iitgsdd----------~lvKiwS~et~~~lAs~rGhs~dit-------------dlavs~-~n 244 (1113)
T KOG0644|consen 189 HRNAVYCAIFDRTGRYIITGSDD----------RLVKIWSMETARCLASCRGHSGDIT-------------DLAVSS-NN 244 (1113)
T ss_pred hhhheeeeeeccccceEeecCcc----------ceeeeeeccchhhhccCCCCccccc-------------hhccch-hh
Confidence 34459999999999999999999 8999999999999999999998874 577787 88
Q ss_pred CEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeee--
Q 005140 332 KYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLF-- 408 (712)
Q Consensus 332 ~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-- 408 (712)
.++|+++ |..|++|.++++.++.....|.+.|+.++|+|-. . .+.++.+++|.|+......+....-+
T Consensus 245 ~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----s-----ss~dgt~~~wd~r~~~~~y~prp~~~~~ 315 (1113)
T KOG0644|consen 245 TMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----S-----SSDDGTCRIWDARLEPRIYVPRPLKFTE 315 (1113)
T ss_pred hhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----c-----CCCCCceEeccccccccccCCCCCCccc
Confidence 8889888 9999999999999998888999999999999965 3 56899999999984333211111111
Q ss_pred eecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCC-CEEEEEEcCCCC
Q 005140 409 SVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG-HRFAVIHGDSPR 487 (712)
Q Consensus 409 ~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g-~~l~~~~~d~~~ 487 (712)
..-.+.+.+...|..+++++.++.. ..|.+.. +..|...+.-+..+.+. .+.+++-.+-
T Consensus 316 ~~~~~s~~~~~~~~~f~Tgs~d~ea---------~n~e~~~---------l~~~~~~lif~t~ssd~~~~~~~ar~~~-- 375 (1113)
T KOG0644|consen 316 KDLVDSILFENNGDRFLTGSRDGEA---------RNHEFEQ---------LAWRSNLLIFVTRSSDLSSIVVTARNDH-- 375 (1113)
T ss_pred ccceeeeeccccccccccccCCccc---------ccchhhH---------hhhhccceEEEeccccccccceeeeeee--
Confidence 1112233455566666666665541 1121110 00111111111111122 2222233333
Q ss_pred CeEEEEEeecccccCceeEEEEeCC--CceeEEEEccCCCeEE-EEeccCCCceEEEEECCcceeeee--ccccceeeEE
Q 005140 488 PDISFYSMRTAQHAGRVSKLTTLKG--KQANALFWSPSGRFIV-LAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVE 562 (712)
Q Consensus 488 ~~v~i~d~~~~~~~~~~~~~~~~~~--~~v~~l~~spdg~~l~-~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~ 562 (712)
.+.+|++.++. +.+.+.+ +.+..+.++|-...++ +++. ||...|||+-.+..+.. ..++.+.+.+
T Consensus 376 -~~~vwnl~~g~------l~H~l~ghsd~~yvLd~Hpfn~ri~msag~---dgst~iwdi~eg~pik~y~~gh~kl~d~k 445 (1113)
T KOG0644|consen 376 -RLCVWNLYTGQ------LLHNLMGHSDEVYVLDVHPFNPRIAMSAGY---DGSTIIWDIWEGIPIKHYFIGHGKLVDGK 445 (1113)
T ss_pred -Eeeeeecccch------hhhhhcccccceeeeeecCCCcHhhhhccC---CCceEeeecccCCcceeeecccceeeccc
Confidence 57788886654 3444433 3678899999776555 5666 99999999987766553 3467788899
Q ss_pred ECCCCCEEEEEEccceeccccEEEEEec
Q 005140 563 WDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 563 ~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
||+||..++.... -|.++|....
T Consensus 446 FSqdgts~~lsd~-----hgql~i~g~g 468 (1113)
T KOG0644|consen 446 FSQDGTSIALSDD-----HGQLYILGTG 468 (1113)
T ss_pred cCCCCceEecCCC-----CCceEEeccC
Confidence 9999999888777 6788887654
No 209
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.54 E-value=3.6e-14 Score=147.65 Aligned_cols=278 Identities=13% Similarity=0.165 Sum_probs=187.8
Q ss_pred CcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee-cCC-CeeEEEecCCCCEEEEEcCCCCCCCcC
Q 005140 205 PEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRD 281 (712)
Q Consensus 205 ~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~ 281 (712)
.+..+-+|...|+|+.|...|.|+++|+.+. ++||..+ +..++... +|. .|+.++.+.+...+++++.|
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~e-t~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D------- 253 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSME-TARCLASCRGHSGDITDLAVSSNNTMIAAASND------- 253 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeecc-chhhhccCCCCccccchhccchhhhhhhhcccC-------
Confidence 3445678999999999999999999999999 7799988 77777665 355 49999999999999999999
Q ss_pred CCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceec--cccccc
Q 005140 282 ANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLI--DKKSLK 359 (712)
Q Consensus 282 ~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~--~~~~~~ 359 (712)
..|++|-+.+|.++..+.+|.+.++ +++||| -- +++.||++++||.. ...+ ......
T Consensus 254 ---~vIrvWrl~~~~pvsvLrghtgavt-------------aiafsP-~~---sss~dgt~~~wd~r-~~~~~y~prp~~ 312 (1113)
T KOG0644|consen 254 ---KVIRVWRLPDGAPVSVLRGHTGAVT-------------AIAFSP-RA---SSSDDGTCRIWDAR-LEPRIYVPRPLK 312 (1113)
T ss_pred ---ceEEEEecCCCchHHHHhcccccee-------------eeccCc-cc---cCCCCCceEecccc-ccccccCCCCCC
Confidence 9999999999999999999998875 799999 32 33449999999987 1111 000011
Q ss_pred ---ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccc--cc
Q 005140 360 ---VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYT--KT 434 (712)
Q Consensus 360 ---~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~--~~ 434 (712)
..-+..+.|...+..+++ ++.++....|.+..-. |...+-.++....+.. ..
T Consensus 313 ~~~~~~~~s~~~~~~~~~f~T-----gs~d~ea~n~e~~~l~------------------~~~~~lif~t~ssd~~~~~~ 369 (1113)
T KOG0644|consen 313 FTEKDLVDSILFENNGDRFLT-----GSRDGEARNHEFEQLA------------------WRSNLLIFVTRSSDLSSIVV 369 (1113)
T ss_pred cccccceeeeecccccccccc-----ccCCcccccchhhHhh------------------hhccceEEEeccccccccce
Confidence 112555666666666666 6667666665544322 2222211111111100 00
Q ss_pred cccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEE-cCCCCCeEEEEEeecccccCceeEEEEeCCC
Q 005140 435 KKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIH-GDSPRPDISFYSMRTAQHAGRVSKLTTLKGK 513 (712)
Q Consensus 435 ~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~-~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~ 513 (712)
....+..+.+|++..... ...+.+|...+..+.++|-...++... .|| ...|||+-.+... .+......
T Consensus 370 ~ar~~~~~~vwnl~~g~l---~H~l~ghsd~~yvLd~Hpfn~ri~msag~dg---st~iwdi~eg~pi----k~y~~gh~ 439 (1113)
T KOG0644|consen 370 TARNDHRLCVWNLYTGQL---LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDG---STIIWDIWEGIPI----KHYFIGHG 439 (1113)
T ss_pred eeeeeeEeeeeecccchh---hhhhcccccceeeeeecCCCcHhhhhccCCC---ceEeeecccCCcc----eeeecccc
Confidence 000011144555543211 123457889999999999777776554 477 8999999765532 22233333
Q ss_pred ceeEEEEccCCCeEEEEeccCCCceEEEEECCcc
Q 005140 514 QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL 547 (712)
Q Consensus 514 ~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~ 547 (712)
.+..-+||+||..+++... -|.++|.....+
T Consensus 440 kl~d~kFSqdgts~~lsd~---hgql~i~g~gqs 470 (1113)
T KOG0644|consen 440 KLVDGKFSQDGTSIALSDD---HGQLYILGTGQS 470 (1113)
T ss_pred eeeccccCCCCceEecCCC---CCceEEeccCCC
Confidence 5677899999999988776 789999877643
No 210
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.53 E-value=2.4e-12 Score=135.89 Aligned_cols=261 Identities=17% Similarity=0.305 Sum_probs=165.9
Q ss_pred eEEeecccCcceeeeecCC-CeeEEEecCCC-CEEEEEcCCCCCCCcCCCccEEEEEEccCCce--eeecc----CCCcc
Q 005140 236 AAVWGGANTFNRLMRYAHP-QVKLIDFSPGE-KYLVTYSSHEPSNPRDANRVVINIFDVRTGKV--MRDFK----GSADE 307 (712)
Q Consensus 236 i~iw~~~~~~~~~~~~~~~-~v~~i~~Spdg-~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~--~~~~~----~~~~~ 307 (712)
+.||++.........+..+ .|.++.|+|.. .+||.|..+ |+|.+||++.+.. ...+. .|...
T Consensus 224 ~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~----------GqV~lWD~~~~~~~~~s~ls~~~~sh~~~ 293 (555)
T KOG1587|consen 224 LLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYN----------GQVVLWDLRKGSDTPPSGLSALEVSHSEP 293 (555)
T ss_pred EEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccC----------ceEEEEEccCCCCCCCcccccccccCCcC
Confidence 5699998554555555544 59999999965 556666666 9999999977664 22222 12222
Q ss_pred cccCCCCCcCCCCcCeEEecCCCC--CEEEEec-CCeEEEEEcCCcee------ccccc------ccccCeeeEEECCCC
Q 005140 308 FAVGGTGGVAGVSWPVFRWGGGKD--KYFAKLG-KNMISVYETESFTL------IDKKS------LKVENVMDFSWSPTD 372 (712)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~s~~dg--~~la~~~-d~~i~iwd~~~~~~------~~~~~------~~~~~v~~~~~sp~~ 372 (712)
+ . .+.|.. +. .-|++++ ||.|..|+++.... ..... ....+++.++|.|..
T Consensus 294 v--------~-----~vvW~~-~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~ 359 (555)
T KOG1587|consen 294 V--------T-----AVVWLQ-NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD 359 (555)
T ss_pred e--------E-----EEEEec-cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCC
Confidence 2 1 567765 33 2366665 99999998764321 11111 122358889999875
Q ss_pred CeEEEEeecCCCCCCCeEE-EEEecCCc-----cceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEE
Q 005140 373 PIISLFVPELGGGNQPARV-SLVQIPSK-----EELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFR 446 (712)
Q Consensus 373 ~~la~~~~~~~~~~~~~~i-~~~~~~~~-----~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~ 446 (712)
....+. |+..|.+.- ........ +.......+......+.++|=+..++..+.|.+ ++||.
T Consensus 360 p~~FiV----GTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~---------vriWs 426 (555)
T KOG1587|consen 360 PNHFIV----GTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWT---------VRIWS 426 (555)
T ss_pred CceEEE----EcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccce---------eEecc
Confidence 433332 444444332 11222111 122233445556666788998876666666766 78888
Q ss_pred EecCCcceeEEEecCCCCceEEEEEeeCC-CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccC
Q 005140 447 IKERDIPIEVLELDNKNDKIIAFAWEPKG-HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPS 523 (712)
Q Consensus 447 l~~~~~~~~~~~l~~h~~~v~~~~~sp~g-~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spd 523 (712)
..-...|. +.+..+...+++++|||.- ..|+++..+| .|.|||+...... ++.+.. ....+.+.|+++
T Consensus 427 ~~~~~~Pl--~~~~~~~~~v~~vaWSptrpavF~~~d~~G---~l~iWDLl~~~~~----Pv~s~~~~~~~l~~~~~s~~ 497 (555)
T KOG1587|consen 427 EDVIASPL--LSLDSSPDYVTDVAWSPTRPAVFATVDGDG---NLDIWDLLQDDEE----PVLSQKVCSPALTRVRWSPN 497 (555)
T ss_pred ccCCCCcc--hhhhhccceeeeeEEcCcCceEEEEEcCCC---ceehhhhhccccC----CcccccccccccceeecCCC
Confidence 76444443 3333456779999999954 5677777788 9999999654332 333332 334578999999
Q ss_pred CCeEEEEeccCCCceEEEEECC
Q 005140 524 GRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 524 g~~l~~~~~~~~dg~v~iwd~~ 545 (712)
|+.|++|.. .|.+.+|++.
T Consensus 498 g~~lavGd~---~G~~~~~~l~ 516 (555)
T KOG1587|consen 498 GKLLAVGDA---NGTTHILKLS 516 (555)
T ss_pred CcEEEEecC---CCcEEEEEcC
Confidence 999999998 9999999986
No 211
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=1.9e-13 Score=132.60 Aligned_cols=193 Identities=17% Similarity=0.274 Sum_probs=134.9
Q ss_pred ceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee--cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc
Q 005140 217 SFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY--AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR 293 (712)
Q Consensus 217 ~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~--~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~ 293 (712)
.+++|+++|+.||+++.|| ++||+++ +...+... +|..|.++.|||||++|++.+.+ ..+||++.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~P-s~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-----------~~~VW~~~ 215 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWP-SMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-----------SARVWSVN 215 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecC-cchhhhhhHhhcCccccceeCCCCcEEEEecCC-----------ceEEEEec
Confidence 6799999999999999999 8899988 66655554 46679999999999999999998 58899999
Q ss_pred CCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC---C-EEEEec--CCeEEEEEcCCce-----ecccccccccC
Q 005140 294 TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD---K-YFAKLG--KNMISVYETESFT-----LIDKKSLKVEN 362 (712)
Q Consensus 294 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg---~-~la~~~--d~~i~iwd~~~~~-----~~~~~~~~~~~ 362 (712)
+|..+........... +..++|+. |+ . ++++.. .+.|..|++.... ...+.......
T Consensus 216 ~g~~~a~~t~~~k~~~-----------~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~s 283 (398)
T KOG0771|consen 216 TGAALARKTPFSKDEM-----------FSSCRFSV-DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKS 283 (398)
T ss_pred cCchhhhcCCcccchh-----------hhhceecc-cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCc
Confidence 9977666653222111 22678888 77 3 333333 5666666654221 22233334557
Q ss_pred eeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccE
Q 005140 363 VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGF 442 (712)
Q Consensus 363 v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~ 442 (712)
|.+++.|++|+++++ |+.++.+.|+. ..+.+
T Consensus 284 iSsl~VS~dGkf~Al-----GT~dGsVai~~--~~~lq------------------------------------------ 314 (398)
T KOG0771|consen 284 ISSLAVSDDGKFLAL-----GTMDGSVAIYD--AKSLQ------------------------------------------ 314 (398)
T ss_pred ceeEEEcCCCcEEEE-----eccCCcEEEEE--eceee------------------------------------------
Confidence 999999999999998 66665554432 11100
Q ss_pred EEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEee
Q 005140 443 ELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMR 496 (712)
Q Consensus 443 ~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~ 496 (712)
.++ +.-..|...|+.+.|+|+.++++..+.+. ...+..+.
T Consensus 315 ~~~-----------~vk~aH~~~VT~ltF~Pdsr~~~svSs~~---~~~v~~l~ 354 (398)
T KOG0771|consen 315 RLQ-----------YVKEAHLGFVTGLTFSPDSRYLASVSSDN---EAAVTKLA 354 (398)
T ss_pred eeE-----------eehhhheeeeeeEEEcCCcCcccccccCC---ceeEEEEe
Confidence 111 11126788999999999999999988877 66666663
No 212
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=2.9e-12 Score=137.27 Aligned_cols=247 Identities=13% Similarity=0.179 Sum_probs=153.5
Q ss_pred eEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcC
Q 005140 341 MISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSS 420 (712)
Q Consensus 341 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 420 (712)
.|.++|...+... ....+...+....|||||+.|++... .++...||++++.+.+...... .......+.|+|+
T Consensus 180 ~l~~~d~~g~~~~-~l~~~~~~~~~p~wSpDG~~la~~s~----~~~~~~l~~~~l~~g~~~~l~~-~~g~~~~~~~SpD 253 (430)
T PRK00178 180 TLQRSDYDGARAV-TLLQSREPILSPRWSPDGKRIAYVSF----EQKRPRIFVQNLDTGRREQITN-FEGLNGAPAWSPD 253 (430)
T ss_pred EEEEECCCCCCce-EEecCCCceeeeeECCCCCEEEEEEc----CCCCCEEEEEECCCCCEEEccC-CCCCcCCeEECCC
Confidence 4666676644322 12223345788999999999987422 2345679999887654322111 1222334789999
Q ss_pred CCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccc
Q 005140 421 GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQH 500 (712)
Q Consensus 421 g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~ 500 (712)
|+.|++...... ...||.++..+... ..+..+........|+|||+.|++.+...+...|+++++.++..
T Consensus 254 G~~la~~~~~~g--------~~~Iy~~d~~~~~~--~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~ 323 (430)
T PRK00178 254 GSKLAFVLSKDG--------NPEIYVMDLASRQL--SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA 323 (430)
T ss_pred CCEEEEEEccCC--------CceEEEEECCCCCe--EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 999987654321 13455554433332 23444555667789999999999887654444777778755432
Q ss_pred cCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEccceec
Q 005140 501 AGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEM 580 (712)
Q Consensus 501 ~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~ 580 (712)
..+. ..+.......|||||++|+..........|.+||+.+++.....+........|+|||++|+.++.. ..
T Consensus 324 ----~~lt-~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~--~g 396 (430)
T PRK00178 324 ----ERVT-FVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQ--QG 396 (430)
T ss_pred ----EEee-cCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEEEEec--CC
Confidence 1222 2233345688999999999876522133688899987654432222233467999999999988762 00
Q ss_pred cccEEEEEecCceeeee--cccceeeeEEecC
Q 005140 581 ENGFNIWSFNGKLLYRT--LKDHFFQFLWRPR 610 (712)
Q Consensus 581 d~~v~iw~~~g~~~~~~--~~~~i~~~~w~p~ 610 (712)
...+.++++.|...... +.+.+...+|+|.
T Consensus 397 ~~~l~~~~~~g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 397 RGVLMLVSINGRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred ceEEEEEECCCCceEECcCCCCCcCCCccCCC
Confidence 23466777877655433 3356788899885
No 213
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.53 E-value=3e-12 Score=117.76 Aligned_cols=255 Identities=17% Similarity=0.262 Sum_probs=164.7
Q ss_pred ccccCCCcccceEEEcCC-CcEEEEEecC--------ceEEeecccC--------cceeeee---cCCCeeEEEecCCCC
Q 005140 207 PVYKRSYWTESFVQWSPL-GTYLATVHRQ--------GAAVWGGANT--------FNRLMRY---AHPQVKLIDFSPGEK 266 (712)
Q Consensus 207 ~~~~~~~~~v~~v~~Spd-g~~lat~~~~--------~i~iw~~~~~--------~~~~~~~---~~~~v~~i~~Spdg~ 266 (712)
..|..|.+.|..++=||- .+.|+|+..+ ++.||.+... .+.+..+ ++..|.|+.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 356778888999999994 5566665431 2569987621 2223333 244699999999999
Q ss_pred EEEEEcCCCCCCCcCCCccEEEEEEccCCce-eeeccCCCcccccCCCCCcCCCCcCeEEecCC-CCCEEEEecCCeEEE
Q 005140 267 YLVTYSSHEPSNPRDANRVVINIFDVRTGKV-MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGG-KDKYFAKLGKNMISV 344 (712)
Q Consensus 267 ~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-dg~~la~~~d~~i~i 344 (712)
.|++.... .|.+|++..+.. +..+......- .. ..+..-+|||+ +|..+++.+++++..
T Consensus 137 klasm~dn-----------~i~l~~l~ess~~vaev~ss~s~e------~~--~~ftsg~WspHHdgnqv~tt~d~tl~~ 197 (370)
T KOG1007|consen 137 KLASMDDN-----------NIVLWSLDESSKIVAEVLSSESAE------MR--HSFTSGAWSPHHDGNQVATTSDSTLQF 197 (370)
T ss_pred eeEEeccC-----------ceEEEEcccCcchheeeccccccc------cc--ceecccccCCCCccceEEEeCCCcEEE
Confidence 99988744 799999987765 33333221110 00 11225689984 999999999999999
Q ss_pred EEcCCceecccc-cccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCE
Q 005140 345 YETESFTLIDKK-SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDY 423 (712)
Q Consensus 345 wd~~~~~~~~~~-~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 423 (712)
||+.+++..... ..|...|.++.|+|+..++++. ++.++.++||
T Consensus 198 ~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt----~gDdgyvriW------------------------------- 242 (370)
T KOG1007|consen 198 WDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVT----CGDDGYVRIW------------------------------- 242 (370)
T ss_pred EEccchhhhcchhhhhcceeeeccCCCCceEEEEE----cCCCccEEEE-------------------------------
Confidence 999987755433 2455668999999987655442 4455554443
Q ss_pred EEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCC-CEEEEEEcCCCCCeEEEEEeeccccc-
Q 005140 424 LAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG-HRFAVIHGDSPRPDISFYSMRTAQHA- 501 (712)
Q Consensus 424 l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g-~~l~~~~~d~~~~~v~i~d~~~~~~~- 501 (712)
+.+....|+ .++++|.-.|.++.|+|.- +.+++++.|. .|.+|...+-...
T Consensus 243 ----------------------D~R~tk~pv--~el~~HsHWvW~VRfn~~hdqLiLs~~SDs---~V~Lsca~svSSE~ 295 (370)
T KOG1007|consen 243 ----------------------DTRKTKFPV--QELPGHSHWVWAVRFNPEHDQLILSGGSDS---AVNLSCASSVSSEQ 295 (370)
T ss_pred ----------------------eccCCCccc--cccCCCceEEEEEEecCccceEEEecCCCc---eeEEEecccccccc
Confidence 333333332 5677899999999999954 5556666677 7888876432200
Q ss_pred -----------------Ccee-----EEEEeCCC--ceeEEEEccCCCeEE-EEeccCCCceEEEEECC
Q 005140 502 -----------------GRVS-----KLTTLKGK--QANALFWSPSGRFIV-LAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 502 -----------------~~~~-----~~~~~~~~--~v~~l~~spdg~~l~-~~~~~~~dg~v~iwd~~ 545 (712)
.+.+ .+.++..| .|.+++||.-..+++ +-++ ||.+.|=.+.
T Consensus 296 qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSY---DGRviIs~V~ 361 (370)
T KOG1007|consen 296 QIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSY---DGRVIISSVP 361 (370)
T ss_pred ccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEecc---CceEEeecCC
Confidence 0111 12233333 688999988766654 4566 8888776554
No 214
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=6.6e-12 Score=134.58 Aligned_cols=243 Identities=12% Similarity=0.066 Sum_probs=145.2
Q ss_pred eEEeecccCcceeeee-cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCC
Q 005140 236 AAVWGGANTFNRLMRY-AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTG 314 (712)
Q Consensus 236 i~iw~~~~~~~~~~~~-~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~ 314 (712)
+.++|.. +....... +...+.++.|||||++|++.+... ....|.+|++.+|+..+.. .......
T Consensus 181 l~~~d~~-g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~-------~~~~l~~~~l~~g~~~~l~-~~~g~~~----- 246 (430)
T PRK00178 181 LQRSDYD-GARAVTLLQSREPILSPRWSPDGKRIAYVSFEQ-------KRPRIFVQNLDTGRREQIT-NFEGLNG----- 246 (430)
T ss_pred EEEECCC-CCCceEEecCCCceeeeeECCCCCEEEEEEcCC-------CCCEEEEEECCCCCEEEcc-CCCCCcC-----
Confidence 5567777 33322222 334589999999999999876541 1247999999888654322 2111110
Q ss_pred CcCCCCcCeEEecCCCCCEEEEec--CC--eEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeE
Q 005140 315 GVAGVSWPVFRWGGGKDKYFAKLG--KN--MISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPAR 390 (712)
Q Consensus 315 ~~~~~~~~~~~~s~~dg~~la~~~--d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~ 390 (712)
.+.||| ||+.|+... ++ .|.+|++.++.... ...+........|+|+|+.|++.. ..++...
T Consensus 247 --------~~~~Sp-DG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s----~~~g~~~ 312 (430)
T PRK00178 247 --------APAWSP-DGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTS----DRGGKPQ 312 (430)
T ss_pred --------CeEECC-CCCEEEEEEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEE----CCCCCce
Confidence 479999 999887543 33 68888988765432 212222356689999999988742 1344567
Q ss_pred EEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEE
Q 005140 391 VSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFA 470 (712)
Q Consensus 391 i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~ 470 (712)
|+.+++...+... ............|+|+|++|++...... ...||.++..+.....+.- ........
T Consensus 313 iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~--------~~~l~~~dl~tg~~~~lt~---~~~~~~p~ 380 (430)
T PRK00178 313 IYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDG--------NFHVAAQDLQRGSVRILTD---TSLDESPS 380 (430)
T ss_pred EEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCC--------ceEEEEEECCCCCEEEccC---CCCCCCce
Confidence 8888876654221 1111122234679999999998765421 1234444433333222222 22334578
Q ss_pred EeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccC
Q 005140 471 WEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPS 523 (712)
Q Consensus 471 ~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spd 523 (712)
|+|+|+.+++.+.+++...|.++++..... ..+. ...+.+..++|||-
T Consensus 381 ~spdg~~i~~~~~~~g~~~l~~~~~~g~~~----~~l~-~~~g~~~~p~ws~~ 428 (430)
T PRK00178 381 VAPNGTMLIYATRQQGRGVLMLVSINGRVR----LPLP-TAQGEVREPSWSPY 428 (430)
T ss_pred ECCCCCEEEEEEecCCceEEEEEECCCCce----EECc-CCCCCcCCCccCCC
Confidence 999999999988765544677777643211 0121 22345677888873
No 215
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.50 E-value=7.2e-12 Score=134.17 Aligned_cols=242 Identities=16% Similarity=0.213 Sum_probs=144.3
Q ss_pred cEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec----CCeEEEEEcCCceecccccccc
Q 005140 285 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG----KNMISVYETESFTLIDKKSLKV 360 (712)
Q Consensus 285 ~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~----d~~i~iwd~~~~~~~~~~~~~~ 360 (712)
..|.++|.. |...+.+..+...+ + .++||| ||++|+.+. ...|.+|++.++...... ...
T Consensus 170 ~~l~~~d~~-g~~~~~l~~~~~~~------------~-~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~-~~~ 233 (417)
T TIGR02800 170 YELQVADYD-GANPQTITRSREPI------------L-SPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREKVA-SFP 233 (417)
T ss_pred ceEEEEcCC-CCCCEEeecCCCce------------e-cccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEee-cCC
Confidence 578898874 44444454444322 1 478999 999999876 247999999876533211 122
Q ss_pred cCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccc
Q 005140 361 ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 440 (712)
Q Consensus 361 ~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~ 440 (712)
..+..++|+|+|+.|++. .+.++...|+.+++.+..
T Consensus 234 ~~~~~~~~spDg~~l~~~----~~~~~~~~i~~~d~~~~~---------------------------------------- 269 (417)
T TIGR02800 234 GMNGAPAFSPDGSKLAVS----LSKDGNPDIYVMDLDGKQ---------------------------------------- 269 (417)
T ss_pred CCccceEECCCCCEEEEE----ECCCCCccEEEEECCCCC----------------------------------------
Confidence 235567888888877652 112233344444432211
Q ss_pred cEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEE
Q 005140 441 GFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFW 520 (712)
Q Consensus 441 ~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~ 520 (712)
. ..+..+.......+|+|+|++|++.+..+....|+++++.++.. ..+ .........+.|
T Consensus 270 -------------~--~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~----~~l-~~~~~~~~~~~~ 329 (417)
T TIGR02800 270 -------------L--TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV----RRL-TFRGGYNASPSW 329 (417)
T ss_pred -------------E--EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE----EEe-ecCCCCccCeEE
Confidence 0 11112233344568999999998887654444677777754331 122 223445678899
Q ss_pred ccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCceeeeec--
Q 005140 521 SPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTL-- 598 (712)
Q Consensus 521 spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~~-- 598 (712)
+|+|++|++++.......|.+||+.++.............+.|+|||++|++++.. .....+.+.+..|.......
T Consensus 330 spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~~~~~--~~~~~l~~~~~~g~~~~~~~~~ 407 (417)
T TIGR02800 330 SPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTR--GGRGVLGLVSTDGRFRARLPLG 407 (417)
T ss_pred CCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEEEEEEeC--CCcEEEEEEECCCceeeECCCC
Confidence 99999999987622123789999887554333333344567999999999988872 00124556666676554442
Q ss_pred ccceeeeEEe
Q 005140 599 KDHFFQFLWR 608 (712)
Q Consensus 599 ~~~i~~~~w~ 608 (712)
.+.+..+.|+
T Consensus 408 ~g~~~~~~ws 417 (417)
T TIGR02800 408 NGDVREPAWS 417 (417)
T ss_pred CCCcCCCCCC
Confidence 2345555553
No 216
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.50 E-value=1.2e-11 Score=132.40 Aligned_cols=241 Identities=15% Similarity=0.149 Sum_probs=138.2
Q ss_pred eEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCC
Q 005140 236 AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGG 315 (712)
Q Consensus 236 i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~ 315 (712)
+.++|..+........+...+.++.|||||++|+++.... ....|++||+.+++...... +....
T Consensus 172 l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~-------~~~~i~v~d~~~g~~~~~~~-~~~~~------- 236 (417)
T TIGR02800 172 LQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFES-------GKPEIYVQDLATGQREKVAS-FPGMN------- 236 (417)
T ss_pred EEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCC-------CCcEEEEEECCCCCEEEeec-CCCCc-------
Confidence 6677776222222222333488999999999999887551 11579999998886543222 22111
Q ss_pred cCCCCcCeEEecCCCCCEEEEec--C--CeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEE
Q 005140 316 VAGVSWPVFRWGGGKDKYFAKLG--K--NMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARV 391 (712)
Q Consensus 316 ~~~~~~~~~~~s~~dg~~la~~~--d--~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i 391 (712)
. .++|+| ||+.|+... + ..|.+|++.++.... ...+........|+|+|+.|++.. ...+...|
T Consensus 237 -----~-~~~~sp-Dg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s----~~~g~~~i 304 (417)
T TIGR02800 237 -----G-APAFSP-DGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTS----DRGGSPQI 304 (417)
T ss_pred -----c-ceEECC-CCCEEEEEECCCCCccEEEEECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEE----CCCCCceE
Confidence 1 479999 999777543 3 358888887654321 111222234567778777776521 11222244
Q ss_pred EEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEE
Q 005140 392 SLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAW 471 (712)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~ 471 (712)
+.++... .... .+..+...+..++|
T Consensus 305 y~~d~~~-----------------------------------------------------~~~~--~l~~~~~~~~~~~~ 329 (417)
T TIGR02800 305 YMMDADG-----------------------------------------------------GEVR--RLTFRGGYNASPSW 329 (417)
T ss_pred EEEECCC-----------------------------------------------------CCEE--EeecCCCCccCeEE
Confidence 4433221 1111 11112344567789
Q ss_pred eeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeee
Q 005140 472 EPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA 551 (712)
Q Consensus 472 sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~ 551 (712)
+|+|+++++++.+++...|.+|++.++. ...+.. ......+.|+|||++|++++.......+++.+........
T Consensus 330 spdg~~i~~~~~~~~~~~i~~~d~~~~~----~~~l~~--~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~ 403 (417)
T TIGR02800 330 SPDGDLIAFVHREGGGFNIAVMDLDGGG----ERVLTD--TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRAR 403 (417)
T ss_pred CCCCCEEEEEEccCCceEEEEEeCCCCC----eEEccC--CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeE
Confidence 9999999998876544478888876532 112211 2234567899999999988763323457777766433221
Q ss_pred -eccccceeeEEEC
Q 005140 552 -TAEHFMATDVEWD 564 (712)
Q Consensus 552 -~~~~~~v~~~~~s 564 (712)
..+.+.+..++||
T Consensus 404 ~~~~~g~~~~~~ws 417 (417)
T TIGR02800 404 LPLGNGDVREPAWS 417 (417)
T ss_pred CCCCCCCcCCCCCC
Confidence 1223455556664
No 217
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.50 E-value=1.5e-12 Score=126.79 Aligned_cols=228 Identities=10% Similarity=0.080 Sum_probs=157.9
Q ss_pred eEEEEECCeeEEEecCCCCC--CCccc------------------ccCCCcccceEEEcCC-CcEEEEEecCc-eEEeec
Q 005140 184 QFVIRSGTDTEVLWNDARHL--KPEPV------------------YKRSYWTESFVQWSPL-GTYLATVHRQG-AAVWGG 241 (712)
Q Consensus 184 ~~~~~~~~~~~~~w~~~~~~--~~~~~------------------~~~~~~~v~~v~~Spd-g~~lat~~~~~-i~iw~~ 241 (712)
-.+++.-+..+-+|+++-.. .|... -++|+..|.+++|... -..||+|+.|. |++||+
T Consensus 194 yvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~ 273 (463)
T KOG0270|consen 194 YVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDV 273 (463)
T ss_pred eEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEc
Confidence 34567777778899974221 11111 2478889999999875 45799999998 889999
Q ss_pred ccCcceeeeec-CCC-eeEEEecCC-CCEEEEEcCCCCCCCcCCCccEEEEEEccCC-ceeeeccCCCcccccCCCCCcC
Q 005140 242 ANTFNRLMRYA-HPQ-VKLIDFSPG-EKYLVTYSSHEPSNPRDANRVVINIFDVRTG-KVMRDFKGSADEFAVGGTGGVA 317 (712)
Q Consensus 242 ~~~~~~~~~~~-~~~-v~~i~~Spd-g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g-~~~~~~~~~~~~~~~~~~~~~~ 317 (712)
. ++++...+. |.+ |+++.|+|. ..+|++|+.| ++|.+.|++.- ..-..++.....-
T Consensus 274 ~-~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D----------~~V~l~D~R~~~~s~~~wk~~g~VE--------- 333 (463)
T KOG0270|consen 274 D-TGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYD----------GTVALKDCRDPSNSGKEWKFDGEVE--------- 333 (463)
T ss_pred C-CCCcceehhhcCCceeEEEecCCCceEEEecccc----------ceEEeeeccCccccCceEEeccceE---------
Confidence 9 888888775 443 999999996 5799999999 99999998731 1111122111111
Q ss_pred CCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCc-eecccccccccCeeeEEECCCCCe-EEEEeecCCCCCCCeEEEEE
Q 005140 318 GVSWPVFRWGGGKDKYFAKLG-KNMISVYETESF-TLIDKKSLKVENVMDFSWSPTDPI-ISLFVPELGGGNQPARVSLV 394 (712)
Q Consensus 318 ~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~~~~-la~~~~~~~~~~~~~~i~~~ 394 (712)
.+.|.|+....+.++. ||+++-+|++.. +.+.....|.++|.++++++.... +++ ++.++.+++|.+
T Consensus 334 -----kv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t-----~s~d~~Vklw~~ 403 (463)
T KOG0270|consen 334 -----KVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLST-----ASTDKVVKLWKF 403 (463)
T ss_pred -----EEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceee-----ccccceEEEEee
Confidence 4788883333444444 999999999864 778888889999999999998655 455 789999999999
Q ss_pred ecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEec
Q 005140 395 QIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKE 449 (712)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 449 (712)
+..+.+.+..+.+.-...++++..|+-.++++...... .+++|++..
T Consensus 404 ~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~--------~~~vwd~~~ 450 (463)
T KOG0270|consen 404 DVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKA--------VLRVWDIFT 450 (463)
T ss_pred cCCCCcccccccccccceeecccCCCcceEEEecCccc--------eEEEeeccc
Confidence 98887766655543333444556666655444332211 267777653
No 218
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.49 E-value=3.9e-10 Score=116.42 Aligned_cols=288 Identities=13% Similarity=0.202 Sum_probs=173.4
Q ss_pred ceEEeeccc-Ccc--eeeee-cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC--ce--eeecc-CCC
Q 005140 235 GAAVWGGAN-TFN--RLMRY-AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG--KV--MRDFK-GSA 305 (712)
Q Consensus 235 ~i~iw~~~~-~~~--~~~~~-~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g--~~--~~~~~-~~~ 305 (712)
+|.+|.++. ++. .+... .......++++|++++|.+..... ...+.|..|.+... .+ +.... ...
T Consensus 14 gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~------~~~g~v~~~~i~~~~g~L~~~~~~~~~g~ 87 (345)
T PF10282_consen 14 GIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGS------GDSGGVSSYRIDPDTGTLTLLNSVPSGGS 87 (345)
T ss_dssp EEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTS------STTTEEEEEEEETTTTEEEEEEEEEESSS
T ss_pred cEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccc------cCCCCEEEEEECCCcceeEEeeeeccCCC
Confidence 577777631 222 22222 234588899999999999887751 11278889988653 32 22232 222
Q ss_pred cccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCC-ceeccccc-c------------cccCeeeEEEC
Q 005140 306 DEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETES-FTLIDKKS-L------------KVENVMDFSWS 369 (712)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~-~~~~~~~~-~------------~~~~v~~~~~s 369 (712)
... .++.+| ++++|+.+. +|.|.++++.. +.+..... . ......++.++
T Consensus 88 ~p~--------------~i~~~~-~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~ 152 (345)
T PF10282_consen 88 SPC--------------HIAVDP-DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFS 152 (345)
T ss_dssp CEE--------------EEEECT-TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-
T ss_pred CcE--------------EEEEec-CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEEC
Confidence 222 588999 999998887 99999999985 43322210 1 12347899999
Q ss_pred CCCCeEEEEeecCCCCCCCeEEEEEecCCcc-ceee---eee-eeecceeEEECcCCCEEEEEEcccccccccccccEEE
Q 005140 370 PTDPIISLFVPELGGGNQPARVSLVQIPSKE-ELRQ---KNL-FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFEL 444 (712)
Q Consensus 370 p~~~~la~~~~~~~~~~~~~~i~~~~~~~~~-~~~~---~~~-~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l 444 (712)
|+++++++. .-+.-+|+.|++.... .+.. ..+ .......+.|+|+|+++++...... .+.+
T Consensus 153 pdg~~v~v~------dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~--------~v~v 218 (345)
T PF10282_consen 153 PDGRFVYVP------DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSN--------TVSV 218 (345)
T ss_dssp TTSSEEEEE------ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTT--------EEEE
T ss_pred CCCCEEEEE------ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCC--------cEEE
Confidence 999988763 2233456666665433 1211 111 1223456789999999888665322 3677
Q ss_pred EEEecCCcceeEEE-ec---C-C--CCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCce
Q 005140 445 FRIKERDIPIEVLE-LD---N-K--NDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQA 515 (712)
Q Consensus 445 ~~l~~~~~~~~~~~-l~---~-h--~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v 515 (712)
|++.........+. +. . . ......++++|||++|+++.... +.|.+|+++...+ .+..+..+. +...
T Consensus 219 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~--~sI~vf~~d~~~g--~l~~~~~~~~~G~~P 294 (345)
T PF10282_consen 219 FDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS--NSISVFDLDPATG--TLTLVQTVPTGGKFP 294 (345)
T ss_dssp EEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT--TEEEEEEECTTTT--TEEEEEEEEESSSSE
T ss_pred EeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccC--CEEEEEEEecCCC--ceEEEEEEeCCCCCc
Confidence 77773222222211 11 1 1 12577899999999999887643 3899999954332 233444443 3456
Q ss_pred eEEEEccCCCeEEEEeccCCCceEEEEECC--cceeeeec---cccceeeEEE
Q 005140 516 NALFWSPSGRFIVLAGLKGFNGQLEFYNVD--ELETMATA---EHFMATDVEW 563 (712)
Q Consensus 516 ~~l~~spdg~~l~~~~~~~~dg~v~iwd~~--~~~~~~~~---~~~~v~~~~~ 563 (712)
..++++|+|++|++++.. ++.|.+|+++ ++.+.... ......|+.|
T Consensus 295 r~~~~s~~g~~l~Va~~~--s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 295 RHFAFSPDGRYLYVANQD--SNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEE-TTSSEEEEEETT--TTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred cEEEEeCCCCEEEEEecC--CCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 889999999999998752 6789998764 66655442 3355566665
No 219
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.48 E-value=6.7e-13 Score=123.84 Aligned_cols=148 Identities=16% Similarity=0.351 Sum_probs=106.5
Q ss_pred EEEEEeeCCCEEEEEEc---CCC----CCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceE
Q 005140 467 IAFAWEPKGHRFAVIHG---DSP----RPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQL 539 (712)
Q Consensus 467 ~~~~~sp~g~~l~~~~~---d~~----~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v 539 (712)
..+.|+|+|++|++... +.. .....+|.++..... ...+..-...+|.+++|+|+|+.+++.. +..++.|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~--~~~i~l~~~~~I~~~~WsP~g~~favi~-g~~~~~v 85 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP--VESIELKKEGPIHDVAWSPNGNEFAVIY-GSMPAKV 85 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc--cceeeccCCCceEEEEECcCCCEEEEEE-ccCCccc
Confidence 46899999999988765 111 114566666443321 1122222234799999999999887664 2237799
Q ss_pred EEEECCcceeeeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEecC-ceeeeecccceeeeEEecCCCCCCChh
Q 005140 540 EFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG-KLLYRTLKDHFFQFLWRPRPPSFLTPE 618 (712)
Q Consensus 540 ~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g-~~~~~~~~~~i~~~~w~p~~~~l~s~~ 618 (712)
.|||++ ++.+...+...++.+.|||+|++|++++.. ...|.+.+||... ..+.......+..+.|+|+|++++++.
T Consensus 86 ~lyd~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~--n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 86 TLYDVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFG--NLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred EEEcCc-ccEeEeecCCCceEEEECCCCCEEEEEEcc--CCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEEE
Confidence 999997 667777777788899999999999999862 1146799999974 455555556788999999999999876
Q ss_pred hH
Q 005140 619 KE 620 (712)
Q Consensus 619 ~d 620 (712)
..
T Consensus 163 t~ 164 (194)
T PF08662_consen 163 TS 164 (194)
T ss_pred ec
Confidence 53
No 220
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.48 E-value=5.8e-12 Score=125.48 Aligned_cols=239 Identities=17% Similarity=0.306 Sum_probs=144.1
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcee------eeccCCCcccccCCCCCcCCCCcCeEEe---
Q 005140 256 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVM------RDFKGSADEFAVGGTGGVAGVSWPVFRW--- 326 (712)
Q Consensus 256 v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 326 (712)
+....++-.|++|+..-.+ .+.+|+.+.+..+ +.+.+.. .. +-.|
T Consensus 126 ~~~~~~~~~gd~lcFnvg~-----------~lyv~~~~g~~~~~~pi~k~~y~gt~-P~--------------cHdfn~~ 179 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVGR-----------ELYVYSYRGAADLSKPIDKREYKGTS-PT--------------CHDFNSF 179 (636)
T ss_pred eeeccccCCCCEEEEecCC-----------eEEEEEccCcchhccchhhhcccCCC-Cc--------------eeccccc
Confidence 5566667778888877665 5889987643221 1122211 11 1122
Q ss_pred --cCCCC-CEEEEecCCeEEEEEcCCceecc----cccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc
Q 005140 327 --GGGKD-KYFAKLGKNMISVYETESFTLID----KKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 399 (712)
Q Consensus 327 --s~~dg-~~la~~~d~~i~iwd~~~~~~~~----~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 399 (712)
.+ .+ .+|+.-+-|.+++++........ ...+....|+++.|-|.+..+.++ +..++ .+++|+....
T Consensus 180 ~a~~-~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~----a~~sG--nlyly~~~~~ 252 (636)
T KOG2394|consen 180 TATP-KGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLV----AHASG--NLYLYDKEIV 252 (636)
T ss_pred ccCC-CCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEE----EEecC--ceEEeecccc
Confidence 22 33 24554557888888765422111 011223569999999976544432 12333 3444443100
Q ss_pred cceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEE
Q 005140 400 EELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFA 479 (712)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~ 479 (712)
.....-.....+++..+++......+ ...|+....+ ..+.|+.++|+|||++||
T Consensus 253 --------~~~t~p~~~~~k~~~~f~i~t~ksk~----------------~rNPv~~w~~--~~g~in~f~FS~DG~~LA 306 (636)
T KOG2394|consen 253 --------CGATAPSYQALKDGDQFAILTSKSKK----------------TRNPVARWHI--GEGSINEFAFSPDGKYLA 306 (636)
T ss_pred --------ccCCCCcccccCCCCeeEEeeeeccc----------------cCCccceeEe--ccccccceeEcCCCceEE
Confidence 01111111123455555554332211 0122222222 156899999999999999
Q ss_pred EEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccc
Q 005140 480 VIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEH 555 (712)
Q Consensus 480 ~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~ 555 (712)
+.+.|+ .++||+..+.. ++..++ -+...|++|||||+||++|+. |.-|.||.+..++++.. +|.
T Consensus 307 ~VSqDG---fLRvF~fdt~e------Llg~mkSYFGGLLCvcWSPDGKyIvtGGE---DDLVtVwSf~erRVVARGqGHk 374 (636)
T KOG2394|consen 307 TVSQDG---FLRIFDFDTQE------LLGVMKSYFGGLLCVCWSPDGKYIVTGGE---DDLVTVWSFEERRVVARGQGHK 374 (636)
T ss_pred EEecCc---eEEEeeccHHH------HHHHHHhhccceEEEEEcCCccEEEecCC---cceEEEEEeccceEEEeccccc
Confidence 999999 99999997644 222222 235799999999999999998 99999999999999886 677
Q ss_pred cceeeEEECC
Q 005140 556 FMATDVEWDP 565 (712)
Q Consensus 556 ~~v~~~~~sp 565 (712)
..|+.++|+|
T Consensus 375 SWVs~VaFDp 384 (636)
T KOG2394|consen 375 SWVSVVAFDP 384 (636)
T ss_pred cceeeEeecc
Confidence 8999999984
No 221
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=1.4e-13 Score=109.88 Aligned_cols=80 Identities=26% Similarity=0.427 Sum_probs=72.7
Q ss_pred cCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 005140 56 SGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135 (712)
Q Consensus 56 ~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 135 (712)
..-+|+|||+||...+. |+.|.++|++.|.|.. |.|-+|+.+..+.|||||+|.++++|..|++.+||+.|+
T Consensus 33 ~r~S~tvyVgNlSfytt------EEqiyELFs~cG~irr--iiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLd 104 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTT------EEQIYELFSKCGDIRR--IIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLD 104 (153)
T ss_pred HhhcceEEEeeeeeeec------HHHHHHHHHhccchhe--eEeccccCCcCccceEEEEEecchhHHHHHHHhccCccc
Confidence 45789999999997554 8899999999999999 999999999999999999999999999999999999999
Q ss_pred CceEEEEEe
Q 005140 136 RAHIFAVNM 144 (712)
Q Consensus 136 ~~~~l~v~~ 144 (712)
.+ ++.+-.
T Consensus 105 dr-~ir~D~ 112 (153)
T KOG0121|consen 105 DR-PIRIDW 112 (153)
T ss_pred cc-ceeeec
Confidence 86 666554
No 222
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=7.7e-10 Score=106.33 Aligned_cols=289 Identities=10% Similarity=0.107 Sum_probs=182.9
Q ss_pred EEEEEC---CeeEEEecCCCCCC--CcccccCCCcccceEEEcCCCcEEEEEecC----ceEEeeccc-Ccc--eeeeec
Q 005140 185 FVIRSG---TDTEVLWNDARHLK--PEPVYKRSYWTESFVQWSPLGTYLATVHRQ----GAAVWGGAN-TFN--RLMRYA 252 (712)
Q Consensus 185 ~~~~~~---~~~~~~w~~~~~~~--~~~~~~~~~~~v~~v~~Spdg~~lat~~~~----~i~iw~~~~-~~~--~~~~~~ 252 (712)
|+.++. ...+..|++..... ....+-.+....+.++|+|++++|.++..+ +|..|.++. ++. .+.+..
T Consensus 6 YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~ 85 (346)
T COG2706 6 YIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT 85 (346)
T ss_pred EEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc
Confidence 444444 55666888752222 222334566778999999999999998766 266665552 122 333332
Q ss_pred CC--CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC-Cceeee--ccCCCcccccCCCCCcCCCCcCeEEec
Q 005140 253 HP--QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT-GKVMRD--FKGSADEFAVGGTGGVAGVSWPVFRWG 327 (712)
Q Consensus 253 ~~--~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~-g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s 327 (712)
.+ ....++++++|++|+++.... +.|.++-+.. |.+... +..|..... ...+..-......++
T Consensus 86 ~~g~~p~yvsvd~~g~~vf~AnY~~---------g~v~v~p~~~dG~l~~~v~~~~h~g~~p---~~rQ~~~h~H~a~~t 153 (346)
T COG2706 86 LPGSPPCYVSVDEDGRFVFVANYHS---------GSVSVYPLQADGSLQPVVQVVKHTGSGP---HERQESPHVHSANFT 153 (346)
T ss_pred cCCCCCeEEEECCCCCEEEEEEccC---------ceEEEEEcccCCccccceeeeecCCCCC---CccccCCccceeeeC
Confidence 22 258899999999999998772 7899998855 443221 111111100 000001001147899
Q ss_pred CCCCCEEEEec--CCeEEEEEcCCceecccccc---cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc--
Q 005140 328 GGKDKYFAKLG--KNMISVYETESFTLIDKKSL---KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE-- 400 (712)
Q Consensus 328 ~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~-- 400 (712)
| ++++|++.. -..|.+|++..+.+...... ...+-+.+.|+|++++..+. .--++.+.+|.|+....+
T Consensus 154 P-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v----~EL~stV~v~~y~~~~g~~~ 228 (346)
T COG2706 154 P-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLV----NELNSTVDVLEYNPAVGKFE 228 (346)
T ss_pred C-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEE----eccCCEEEEEEEcCCCceEE
Confidence 9 999999988 67899999997776543322 23458899999999876653 224667777777764322
Q ss_pred ceeeeee------eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEec-CCCCceEEEEEee
Q 005140 401 ELRQKNL------FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELD-NKNDKIIAFAWEP 473 (712)
Q Consensus 401 ~~~~~~~------~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~h~~~v~~~~~sp 473 (712)
.+..... .......++.+++|++|.+.-.... .+.+|.+...+.....+... .+......+.++|
T Consensus 229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~d--------sI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~ 300 (346)
T COG2706 229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHD--------SIAVFSVDPDGGKLELVGITPTEGQFPRDFNINP 300 (346)
T ss_pred EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCC--------eEEEEEEcCCCCEEEEEEEeccCCcCCccceeCC
Confidence 2222211 1223445678999999987544322 37788888776654444432 2334478899999
Q ss_pred CCCEEEEEEcCCCCCeEEEEEeecccc
Q 005140 474 KGHRFAVIHGDSPRPDISFYSMRTAQH 500 (712)
Q Consensus 474 ~g~~l~~~~~d~~~~~v~i~d~~~~~~ 500 (712)
.|++|+++..++. +|.+|.++...+
T Consensus 301 ~g~~Liaa~q~sd--~i~vf~~d~~TG 325 (346)
T COG2706 301 SGRFLIAANQKSD--NITVFERDKETG 325 (346)
T ss_pred CCCEEEEEccCCC--cEEEEEEcCCCc
Confidence 9999999998774 799999876554
No 223
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=2.3e-13 Score=132.27 Aligned_cols=98 Identities=23% Similarity=0.380 Sum_probs=86.0
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
..+|.|||++||. +..|.+|.-+|++.|+|-+ +.|++|+.+|.+||||||+|.+.++|++||+.||+++|..
T Consensus 81 ~~G~EVfvGkIPr------D~~EdeLvplfEkiG~I~e--lRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~ 152 (506)
T KOG0117|consen 81 PRGCEVFVGKIPR------DVFEDELVPLFEKIGKIYE--LRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRP 152 (506)
T ss_pred CCCceEEecCCCc------cccchhhHHHHHhccceee--EEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccC
Confidence 6899999999998 8889999999999999999 9999999999999999999999999999999999999954
Q ss_pred ceEEEEEe--ecccccccCCCCCCCCCC
Q 005140 137 AHIFAVNM--FDDFDKFMKVPDEWAPPE 162 (712)
Q Consensus 137 ~~~l~v~~--~~~~~~~~~~~~~~~~p~ 162 (712)
.+.|.|+. .+..-.+.++|..|....
T Consensus 153 GK~igvc~Svan~RLFiG~IPK~k~kee 180 (506)
T KOG0117|consen 153 GKLLGVCVSVANCRLFIGNIPKTKKKEE 180 (506)
T ss_pred CCEeEEEEeeecceeEeccCCccccHHH
Confidence 45666654 344666778998886543
No 224
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.46 E-value=5e-10 Score=112.35 Aligned_cols=284 Identities=10% Similarity=0.105 Sum_probs=162.6
Q ss_pred ceEEeecccCcceeeeecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCC
Q 005140 235 GAAVWGGANTFNRLMRYAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGT 313 (712)
Q Consensus 235 ~i~iw~~~~~~~~~~~~~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~ 313 (712)
.|.+.|.. +.+.+..+.... -..+ +||||+.|+.+..--.....+.....|.+||+.+++.++.+..+..+..+ .
T Consensus 28 ~v~ViD~~-~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~--~ 103 (352)
T TIGR02658 28 QVYTIDGE-AGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL--V 103 (352)
T ss_pred eEEEEECC-CCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh--c
Confidence 38899999 888887776443 3334 99999999888771111111112268999999999999988865442100 0
Q ss_pred CCcCCCCcCeEEecCCCCCEEEEec---CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeE
Q 005140 314 GGVAGVSWPVFRWGGGKDKYFAKLG---KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPAR 390 (712)
Q Consensus 314 ~~~~~~~~~~~~~s~~dg~~la~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~ 390 (712)
+.-. + .+++|| ||++|.... ++.|.++|+.+++.+....... +..-+..+.++..+.+ .|+...
T Consensus 104 ~~~~---~-~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~~~~-------~Dg~~~ 170 (352)
T TIGR02658 104 GTYP---W-MTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFFMHC-------RDGSLA 170 (352)
T ss_pred cCcc---c-eEEECC-CCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccEEEe-------ecCceE
Confidence 0000 1 489999 999888765 7999999999988775443311 1222223222222221 222222
Q ss_pred EEEEecCCccceeeeeeeeecc----eeEEECc-CCCEEEEEEcccccccccccccEEEEEEecCC----cceeEEEec-
Q 005140 391 VSLVQIPSKEELRQKNLFSVSD----CKMYWQS-SGDYLAVKVDRYTKTKKSTYTGFELFRIKERD----IPIEVLELD- 460 (712)
Q Consensus 391 i~~~~~~~~~~~~~~~~~~~~~----~~~~~s~-~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~----~~~~~~~l~- 460 (712)
...++...........++.... ....+.+ +|+++.+... +. +.+.++.... .+...+...
T Consensus 171 ~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~---------V~~id~~~~~~~~~~~~~~~~~~~ 240 (352)
T TIGR02658 171 KVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GK---------IFQIDLSSGDAKFLPAIEAFTEAE 240 (352)
T ss_pred EEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-Ce---------EEEEecCCCcceecceeeeccccc
Confidence 2111111111111111111100 0002233 7777766554 33 3444432211 111111110
Q ss_pred ----CCCCceEEEEEeeCCCEEEEEEcC-------CCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCC-eE
Q 005140 461 ----NKNDKIIAFAWEPKGHRFAVIHGD-------SPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGR-FI 527 (712)
Q Consensus 461 ----~h~~~v~~~~~sp~g~~l~~~~~d-------~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~-~l 527 (712)
-+.+.+.-++++|+|+++.+.... .+.+.|.++|..+.+ .+..+. ++.+..+++||||+ +|
T Consensus 241 ~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k------vi~~i~vG~~~~~iavS~Dgkp~l 314 (352)
T TIGR02658 241 KADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK------RLRKIELGHEIDSINVSQDAKPLL 314 (352)
T ss_pred cccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe------EEEEEeCCCceeeEEECCCCCeEE
Confidence 012334459999999999885421 122479999987654 555555 66889999999999 66
Q ss_pred EEEeccCCCceEEEEECCcceeeeec
Q 005140 528 VLAGLKGFNGQLEFYNVDELETMATA 553 (712)
Q Consensus 528 ~~~~~~~~dg~v~iwd~~~~~~~~~~ 553 (712)
++... . ++.|.++|..+++.+.+.
T Consensus 315 yvtn~-~-s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 315 YALST-G-DKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEeCC-C-CCcEEEEECcCCeEEeee
Confidence 66652 2 788999999999888775
No 225
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.45 E-value=1.7e-10 Score=108.22 Aligned_cols=238 Identities=12% Similarity=0.203 Sum_probs=150.8
Q ss_pred cceEEEcCCCcEEEEEecCceEEeecccCcceeeeec--CCC--eeEEEecCCCCEEEEEc-CCCCCCCcCCCccEEEEE
Q 005140 216 ESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYA--HPQ--VKLIDFSPGEKYLVTYS-SHEPSNPRDANRVVINIF 290 (712)
Q Consensus 216 v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~--~~~--v~~i~~Spdg~~l~t~s-~d~~~~~~~~~~~~I~iw 290 (712)
..+++|..|-..++.+...|.+||+.+ -.+...+.. ..+ +.-+.| -.++||-.+ ... |+... ..|.||
T Consensus 8 ~lsvs~NQD~ScFava~~~Gfriyn~~-P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~---pky~p-NkviIW 80 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTGFRIYNCD-PFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSR---PKYPP-NKVIIW 80 (346)
T ss_pred eeEEEEccCCceEEEEecCceEEEecC-chhhhhhhccccCchhhhhHhh--hhceEEEecCCCC---CCCCC-ceEEEE
Confidence 345999999999999999999999998 444332222 222 333333 234554333 332 22223 479999
Q ss_pred EccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcC-Cceeccccccc--ccCeeeEE
Q 005140 291 DVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETE-SFTLIDKKSLK--VENVMDFS 367 (712)
Q Consensus 291 d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~-~~~~~~~~~~~--~~~v~~~~ 367 (712)
|=...+++.++.-..... .+.+++ ..|+..-.+.|.||... +-+.+...... ..++.+++
T Consensus 81 DD~k~~~i~el~f~~~I~--------------~V~l~r---~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~ 143 (346)
T KOG2111|consen 81 DDLKERCIIELSFNSEIK--------------AVKLRR---DRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLC 143 (346)
T ss_pred ecccCcEEEEEEecccee--------------eEEEcC---CeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeec
Confidence 966677777766554433 567766 67888889999999987 33333221111 11111111
Q ss_pred ECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEE
Q 005140 368 WSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRI 447 (712)
Q Consensus 368 ~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l 447 (712)
-+-....||+ | +... +.+++.++
T Consensus 144 ~~~~k~~Laf--P----g~k~---------------------------------------------------GqvQi~dL 166 (346)
T KOG2111|consen 144 PTSNKSLLAF--P----GFKT---------------------------------------------------GQVQIVDL 166 (346)
T ss_pred CCCCceEEEc--C----CCcc---------------------------------------------------ceEEEEEh
Confidence 1111122221 1 1111 12344444
Q ss_pred ecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC----ceeEEEEccC
Q 005140 448 KERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK----QANALFWSPS 523 (712)
Q Consensus 448 ~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~----~v~~l~~spd 523 (712)
...... ....+.+|...|.+++.+-+|..+|+++..|+ -|+|||..++. ++..+..+ .+.+++|||+
T Consensus 167 ~~~~~~-~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGT--LIRIFdt~~g~------~l~E~RRG~d~A~iy~iaFSp~ 237 (346)
T KOG2111|consen 167 ASTKPN-APSIINAHDSDIACVALNLQGTLVATASTKGT--LIRIFDTEDGT------LLQELRRGVDRADIYCIAFSPN 237 (346)
T ss_pred hhcCcC-CceEEEcccCceeEEEEcCCccEEEEeccCcE--EEEEEEcCCCc------EeeeeecCCchheEEEEEeCCC
Confidence 332211 12446689999999999999999999999884 79999998776 55555522 5899999999
Q ss_pred CCeEEEEeccCCCceEEEEECCc
Q 005140 524 GRFIVLAGLKGFNGQLEFYNVDE 546 (712)
Q Consensus 524 g~~l~~~~~~~~dg~v~iwd~~~ 546 (712)
+.+|++++. .|+|.||.+..
T Consensus 238 ~s~LavsSd---KgTlHiF~l~~ 257 (346)
T KOG2111|consen 238 SSWLAVSSD---KGTLHIFSLRD 257 (346)
T ss_pred ccEEEEEcC---CCeEEEEEeec
Confidence 999999998 89999999874
No 226
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.45 E-value=1e-11 Score=119.19 Aligned_cols=204 Identities=12% Similarity=0.190 Sum_probs=138.0
Q ss_pred cccCCCcccceEEEcC-CCcEEEEEecCc-eEEeecccCcce-------eeee-cCC-CeeEEEecCCC-CEEEEEcCCC
Q 005140 208 VYKRSYWTESFVQWSP-LGTYLATVHRQG-AAVWGGANTFNR-------LMRY-AHP-QVKLIDFSPGE-KYLVTYSSHE 275 (712)
Q Consensus 208 ~~~~~~~~v~~v~~Sp-dg~~lat~~~~~-i~iw~~~~~~~~-------~~~~-~~~-~v~~i~~Spdg-~~l~t~s~d~ 275 (712)
.+-+|+..|..++|+| +...||+|+.|. |.||.+. .... +..+ .|. .|..++|+|.- +.|++++.|
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IP-e~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D- 153 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIP-ENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD- 153 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECC-CcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC-
Confidence 4579999999999999 456799999998 7799876 2221 1111 344 59999999974 678899999
Q ss_pred CCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecc
Q 005140 276 PSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLID 354 (712)
Q Consensus 276 ~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~ 354 (712)
.+|.+||+.+|+.+-++. |.+.+ | ++.|+. ||.+|++.. |..|+|||..+++++.
T Consensus 154 ---------n~v~iWnv~tgeali~l~-hpd~i------------~-S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~ 209 (472)
T KOG0303|consen 154 ---------NTVSIWNVGTGEALITLD-HPDMV------------Y-SMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVS 209 (472)
T ss_pred ---------ceEEEEeccCCceeeecC-CCCeE------------E-EEEecc-CCceeeeecccceeEEEcCCCCcEee
Confidence 899999999999988888 65554 3 699999 999999999 9999999999999887
Q ss_pred ccccccc-CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc-ceeeeeeeeecce-eEEECcCCCEEEEEEccc
Q 005140 355 KKSLKVE-NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE-ELRQKNLFSVSDC-KMYWQSSGDYLAVKVDRY 431 (712)
Q Consensus 355 ~~~~~~~-~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~-~~~~s~~g~~l~~~~~~~ 431 (712)
....|.+ .-....|-.+|.++.+-.. .-..-.+-+|+..... ++....+...+.+ -..|.++.+.++.+....
T Consensus 210 e~~~heG~k~~Raifl~~g~i~tTGfs----r~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD 285 (472)
T KOG0303|consen 210 EGVAHEGAKPARAIFLASGKIFTTGFS----RMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGD 285 (472)
T ss_pred ecccccCCCcceeEEeccCceeeeccc----cccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCC
Confidence 6644543 2445667777774443111 1222334455544332 2332333222322 236777777666544321
Q ss_pred ccccccccccEEEEEEec
Q 005140 432 TKTKKSTYTGFELFRIKE 449 (712)
Q Consensus 432 ~~~~~~~~~~~~l~~l~~ 449 (712)
+.++.|.+..
T Consensus 286 --------~~IRYyEit~ 295 (472)
T KOG0303|consen 286 --------SSIRYFEITN 295 (472)
T ss_pred --------cceEEEEecC
Confidence 1256666654
No 227
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.45 E-value=2.8e-11 Score=111.69 Aligned_cols=264 Identities=13% Similarity=0.240 Sum_probs=173.6
Q ss_pred eEEecCC-C-CCEEEEec-----CCeEEEEEcC--Cceecccccc-cccCeeeEEECCCCC-----eEEEEeecCCCCCC
Q 005140 323 VFRWGGG-K-DKYFAKLG-----KNMISVYETE--SFTLIDKKSL-KVENVMDFSWSPTDP-----IISLFVPELGGGNQ 387 (712)
Q Consensus 323 ~~~~s~~-d-g~~la~~~-----d~~i~iwd~~--~~~~~~~~~~-~~~~v~~~~~sp~~~-----~la~~~~~~~~~~~ 387 (712)
++.||.. + ..+||.++ .+.|.|..+. +++.+....+ |.-+++.+.|.|+.. .||+ .+.
T Consensus 49 a~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLAT-------s~D 121 (364)
T KOG0290|consen 49 AMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLAT-------SSD 121 (364)
T ss_pred eeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhc-------ccC
Confidence 4667631 2 34677776 5778776654 4555544333 333689999999853 4554 667
Q ss_pred CeEEEEEecCCccce-------eeeeeeeecceeEEECcC-CCEEEEEEcccccccccccccEEEEEEecCCcceeEEEe
Q 005140 388 PARVSLVQIPSKEEL-------RQKNLFSVSDCKMYWQSS-GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL 459 (712)
Q Consensus 388 ~~~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~s~~-g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 459 (712)
..++|.......+.. ....-+.....++.|+.- -+++.+.+-|.+ ..+|++...........|
T Consensus 122 ~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTT---------CTiWdie~~~~~~vkTQL 192 (364)
T KOG0290|consen 122 FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTT---------CTIWDIETGVSGTVKTQL 192 (364)
T ss_pred eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCe---------EEEEEEeeccccceeeEE
Confidence 788887775333211 112224455566778764 456666666655 789999865221223446
Q ss_pred cCCCCceEEEEEeeCC-CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCC-CeEEEEeccCC
Q 005140 460 DNKNDKIIAFAWEPKG-HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSG-RFIVLAGLKGF 535 (712)
Q Consensus 460 ~~h~~~v~~~~~sp~g-~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg-~~l~~~~~~~~ 535 (712)
.+|...|..++|...| +.||+++.|| .|++||++..... ..+..-+ ..+...++|++.. +++|+-..+
T Consensus 193 IAHDKEV~DIaf~~~s~~~FASvgaDG---SvRmFDLR~leHS---TIIYE~p~~~~pLlRLswnkqDpnymATf~~d-- 264 (364)
T KOG0290|consen 193 IAHDKEVYDIAFLKGSRDVFASVGADG---SVRMFDLRSLEHS---TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMD-- 264 (364)
T ss_pred EecCcceeEEEeccCccceEEEecCCC---cEEEEEecccccc---eEEecCCCCCCcceeeccCcCCchHHhhhhcC--
Confidence 6999999999999855 5788889999 9999999875432 1222222 2356778898854 566665541
Q ss_pred CceEEEEECCcc-eeee--eccccceeeEEECCCCC-EEEEEEccceeccccEEEEEecCce--------eeeeccccee
Q 005140 536 NGQLEFYNVDEL-ETMA--TAEHFMATDVEWDPTGR-YVATAVTSVHEMENGFNIWSFNGKL--------LYRTLKDHFF 603 (712)
Q Consensus 536 dg~v~iwd~~~~-~~~~--~~~~~~v~~~~~spdg~-~l~t~s~~~~~~d~~v~iw~~~g~~--------~~~~~~~~i~ 603 (712)
...|.|.|++.- ..+. ..|.+.|+.++|.|..+ .|++++. |....|||++.-. +.-...+.|.
T Consensus 265 S~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD-----D~qaliWDl~q~~~~~~~dPilay~a~~EVN 339 (364)
T KOG0290|consen 265 SNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD-----DCQALIWDLQQMPRENGEDPILAYTAGGEVN 339 (364)
T ss_pred CceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC-----cceEEEEecccccccCCCCchhhhhccceee
Confidence 567999999842 2232 37889999999999754 7888888 9999999997321 1122447899
Q ss_pred eeEEecC-CCCCC
Q 005140 604 QFLWRPR-PPSFL 615 (712)
Q Consensus 604 ~~~w~p~-~~~l~ 615 (712)
++.|+|. +.+++
T Consensus 340 qi~Ws~~~~Dwia 352 (364)
T KOG0290|consen 340 QIQWSSSQPDWIA 352 (364)
T ss_pred eeeecccCCCEEE
Confidence 9999975 44444
No 228
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.45 E-value=7.9e-13 Score=129.29 Aligned_cols=256 Identities=14% Similarity=0.181 Sum_probs=195.0
Q ss_pred ceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC
Q 005140 217 SFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT 294 (712)
Q Consensus 217 ~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~ 294 (712)
..+.++.+|++|+.|+..| +..+|+. +....+.+... .|.++.|-.+.+++|++-.. .+.||| ..
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~-t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~-----------y~yvYD-~~ 199 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWV-TKKLHFEINVMETVRDVTFLHNEQFFAVAQKK-----------YVYVYD-NN 199 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecc-cceeeeeeehhhhhhhhhhhcchHHHHhhhhc-----------eEEEec-CC
Confidence 4588999999999999999 8999999 88888888755 49999999999999988765 799999 68
Q ss_pred CceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCC
Q 005140 295 GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDP 373 (712)
Q Consensus 295 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~ 373 (712)
|..++.++.+.... .+.|-| -.-+|++++ .|.+.--|+.+|+++.......+.+..++-+|-+.
T Consensus 200 GtElHClk~~~~v~--------------rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na 264 (545)
T KOG1272|consen 200 GTELHCLKRHIRVA--------------RLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA 264 (545)
T ss_pred CcEEeehhhcCchh--------------hhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc
Confidence 98899888876654 588889 777788888 89999999999999988877777788888899888
Q ss_pred eEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcc
Q 005140 374 IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIP 453 (712)
Q Consensus 374 ~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 453 (712)
.+-+ |..++.+.+ |||+.+--+
T Consensus 265 Vih~-----GhsnGtVSl-------------------------WSP~skePL---------------------------- 286 (545)
T KOG1272|consen 265 VIHL-----GHSNGTVSL-------------------------WSPNSKEPL---------------------------- 286 (545)
T ss_pred eEEE-----cCCCceEEe-------------------------cCCCCcchH----------------------------
Confidence 8887 555555443 566543211
Q ss_pred eeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEec
Q 005140 454 IEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGL 532 (712)
Q Consensus 454 ~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~ 532 (712)
..+..|.++|.++++.++|.|+|+++.|. .++|||++... .+.++. .++...+++|..|-. |+ +.
T Consensus 287 ---vKiLcH~g~V~siAv~~~G~YMaTtG~Dr---~~kIWDlR~~~------ql~t~~tp~~a~~ls~SqkglL-A~-~~ 352 (545)
T KOG1272|consen 287 ---VKILCHRGPVSSIAVDRGGRYMATTGLDR---KVKIWDLRNFY------QLHTYRTPHPASNLSLSQKGLL-AL-SY 352 (545)
T ss_pred ---HHHHhcCCCcceEEECCCCcEEeeccccc---ceeEeeecccc------ccceeecCCCccccccccccce-ee-ec
Confidence 22347899999999999999999999999 99999997543 333333 467888999988743 33 33
Q ss_pred cCCCceEEEEECC-c----ceeeeecc--ccceeeEEECCCCCEEEEEEc
Q 005140 533 KGFNGQLEFYNVD-E----LETMATAE--HFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 533 ~~~dg~v~iwd~~-~----~~~~~~~~--~~~v~~~~~spdg~~l~t~s~ 575 (712)
...|.||.=. . ++.....| .+.|.++.|.|--..|-.|..
T Consensus 353 ---G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~ 399 (545)
T KOG1272|consen 353 ---GDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHA 399 (545)
T ss_pred ---CCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeecccc
Confidence 4588999522 1 11111122 258889999997666655554
No 229
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.45 E-value=1.8e-11 Score=122.11 Aligned_cols=136 Identities=19% Similarity=0.435 Sum_probs=103.1
Q ss_pred CCceEEEEEeeCC-CEEEEEEcCCCCCeEEEEEeecccc-----------cCcee-----------EEE--EeCCCceeE
Q 005140 463 NDKIIAFAWEPKG-HRFAVIHGDSPRPDISFYSMRTAQH-----------AGRVS-----------KLT--TLKGKQANA 517 (712)
Q Consensus 463 ~~~v~~~~~sp~g-~~l~~~~~d~~~~~v~i~d~~~~~~-----------~~~~~-----------~~~--~~~~~~v~~ 517 (712)
...|+++.|-|.+ ..|+++..++ .+++||..-.-. ...+. ++. .+....++.
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sG---nlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~ 295 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASG---NLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINE 295 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecC---ceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccc
Confidence 4789999999954 4556666677 788886532100 00000 111 112235788
Q ss_pred EEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccc--cceeeEEECCCCCEEEEEEccceeccccEEEEEecCceee
Q 005140 518 LFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEH--FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLY 595 (712)
Q Consensus 518 l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~--~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~ 595 (712)
++|||||++||+.+. ||.++|||+.+.+++...+. +...+++|||||+||++|+. |.-|.||.+..+.+.
T Consensus 296 f~FS~DG~~LA~VSq---DGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGE-----DDLVtVwSf~erRVV 367 (636)
T KOG2394|consen 296 FAFSPDGKYLATVSQ---DGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGE-----DDLVTVWSFEERRVV 367 (636)
T ss_pred eeEcCCCceEEEEec---CceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCC-----cceEEEEEeccceEE
Confidence 999999999999998 99999999999888776554 78899999999999999999 999999999855444
Q ss_pred -e--ecccceeeeEEec
Q 005140 596 -R--TLKDHFFQFLWRP 609 (712)
Q Consensus 596 -~--~~~~~i~~~~w~p 609 (712)
. -|...|..++|.|
T Consensus 368 ARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 368 ARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EeccccccceeeEeecc
Confidence 3 2778999999998
No 230
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=9.4e-13 Score=132.02 Aligned_cols=243 Identities=12% Similarity=0.152 Sum_probs=162.3
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC--------CceeeeccCCCcccccCCCCCcCCCCcCe
Q 005140 252 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT--------GKVMRDFKGSADEFAVGGTGGVAGVSWPV 323 (712)
Q Consensus 252 ~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (712)
+...|+.+.|.|....|++++.+ +.|.+|++.. -+++.+|.+|.+++. |
T Consensus 293 ~~d~ir~l~~~~sep~lit~sed----------~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl-------------~ 349 (577)
T KOG0642|consen 293 HDDCIRALAFHPSEPVLITASED----------GTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVL-------------C 349 (577)
T ss_pred chhhhhhhhcCCCCCeEEEeccc----------cchhhhhhcccCCccccceeeeEEEecccCceE-------------E
Confidence 34459999999999999999999 9999999932 146889999999874 7
Q ss_pred EEecCCCCCEEEEec-CCeEEEEEcCCce----------ecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEE
Q 005140 324 FRWGGGKDKYFAKLG-KNMISVYETESFT----------LIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVS 392 (712)
Q Consensus 324 ~~~s~~dg~~la~~~-d~~i~iwd~~~~~----------~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~ 392 (712)
++.++ +++.+.+++ ||+|+.|+++... +......|.+.|..+++|+....|+. ++.|++++.|
T Consensus 350 v~v~~-n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Lls-----cs~DgTvr~w 423 (577)
T KOG0642|consen 350 VVVPS-NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLS-----CSSDGTVRLW 423 (577)
T ss_pred EEecC-CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceee-----ecCCceEEee
Confidence 88999 999999999 9999999776211 22233457777889999988888887 7778887776
Q ss_pred EEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEe
Q 005140 393 LVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWE 472 (712)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~s 472 (712)
...-.....+.... ..+...++.+-
T Consensus 424 ~~~~~~~~~f~~~~-------------------------------------------------------e~g~Plsvd~~ 448 (577)
T KOG0642|consen 424 EPTEESPCTFGEPK-------------------------------------------------------EHGYPLSVDRT 448 (577)
T ss_pred ccCCcCccccCCcc-------------------------------------------------------ccCCcceEeec
Confidence 54322110000000 00111111111
Q ss_pred eCCCEEEEEEc-CCCCCeEEEEEeecccccCceeEEEE--eC----CCceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 473 PKGHRFAVIHG-DSPRPDISFYSMRTAQHAGRVSKLTT--LK----GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 473 p~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~--~~----~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
.....+.+++. -+ .-.++++..... ...+.. .+ ...++.+.++|.+.+.+++.. ++.|+++|..
T Consensus 449 ss~~a~~~~s~~~~---~~~~~~~ev~s~---~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he---d~~Ir~~dn~ 519 (577)
T KOG0642|consen 449 SSRPAHSLASFRFG---YTSIDDMEVVSD---LLIFESSASPGPRRYPQINKVVSHPTADITFTAHE---DRSIRFFDNK 519 (577)
T ss_pred cchhHhhhhhcccc---cccchhhhhhhh---eeeccccCCCcccccCccceEEecCCCCeeEeccc---CCceeccccc
Confidence 10000011111 00 111222211110 001100 01 124678899999988888887 9999999999
Q ss_pred cceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCc
Q 005140 546 ELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK 592 (712)
Q Consensus 546 ~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~ 592 (712)
+++++.. .|...++++++.|+|-+|++++. |+.+++|.+.-.
T Consensus 520 ~~~~l~s~~a~~~svtslai~~ng~~l~s~s~-----d~sv~l~kld~k 563 (577)
T KOG0642|consen 520 TGKILHSMVAHKDSVTSLAIDPNGPYLMSGSH-----DGSVRLWKLDVK 563 (577)
T ss_pred ccccchheeeccceecceeecCCCceEEeecC-----Cceeehhhccch
Confidence 9999875 67789999999999999999999 999999998644
No 231
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.44 E-value=1.5e-11 Score=113.25 Aligned_cols=195 Identities=12% Similarity=0.211 Sum_probs=132.8
Q ss_pred ccchhhccCCCCCceEEEEEC---C----eeEEEecCCCCCCC--------cccc-cCCCcccceEEEcCCCcEEEEEec
Q 005140 170 ENLQKWLTDEKARDQFVIRSG---T----DTEVLWNDARHLKP--------EPVY-KRSYWTESFVQWSPLGTYLATVHR 233 (712)
Q Consensus 170 ~~l~~~~~~~~~~~~~~~~~~---~----~~~~~w~~~~~~~~--------~~~~-~~~~~~v~~v~~Spdg~~lat~~~ 233 (712)
+.++.....|..+..++..+. + ..+.+|+++....+ +..+ +.+.+.+.|+-|-|++..||+...
T Consensus 64 gEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~d 143 (370)
T KOG1007|consen 64 GEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMDD 143 (370)
T ss_pred cceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEecc
Confidence 444445555555545544443 1 33459999765444 1122 245668999999999999999998
Q ss_pred CceEEeecccCcceeeeec------CC-CeeEEEecC--CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCC
Q 005140 234 QGAAVWGGANTFNRLMRYA------HP-QVKLIDFSP--GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGS 304 (712)
Q Consensus 234 ~~i~iw~~~~~~~~~~~~~------~~-~v~~i~~Sp--dg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~ 304 (712)
+.|.+|++..+.+.+..+. +. ..++-+||| +|..+++.+.. +++.||+++.+....+...
T Consensus 144 n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~-----------tl~~~D~RT~~~~~sI~dA 212 (370)
T KOG1007|consen 144 NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDS-----------TLQFWDLRTMKKNNSIEDA 212 (370)
T ss_pred CceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCC-----------cEEEEEccchhhhcchhhh
Confidence 8899999984444343332 11 377889999 88888887654 8999999988876666543
Q ss_pred C-cccccCCCCCcCCCCcCeEEecCCCCC-EEEEec-CCeEEEEEcCCc-eecccccccccCeeeEEECCCCC-eEEEEe
Q 005140 305 A-DEFAVGGTGGVAGVSWPVFRWGGGKDK-YFAKLG-KNMISVYETESF-TLIDKKSLKVENVMDFSWSPTDP-IISLFV 379 (712)
Q Consensus 305 ~-~~~~~~~~~~~~~~~~~~~~~s~~dg~-~la~~~-d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~~~-~la~~~ 379 (712)
. ..+. .+.|.| +-+ +|++++ |+.|+|||+..- ..+.....|..-|.++.|+|.-. .|++
T Consensus 213 Hgq~vr-------------dlDfNp-nkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs-- 276 (370)
T KOG1007|consen 213 HGQRVR-------------DLDFNP-NKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILS-- 276 (370)
T ss_pred hcceee-------------eccCCC-CceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEe--
Confidence 3 2221 578899 655 677888 999999998843 35555566777799999999854 4455
Q ss_pred ecCCCCCCCeEEEEE
Q 005140 380 PELGGGNQPARVSLV 394 (712)
Q Consensus 380 ~~~~~~~~~~~i~~~ 394 (712)
+|.|..+.++..
T Consensus 277 ---~~SDs~V~Lsca 288 (370)
T KOG1007|consen 277 ---GGSDSAVNLSCA 288 (370)
T ss_pred ---cCCCceeEEEec
Confidence 666666555443
No 232
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=2.7e-13 Score=121.44 Aligned_cols=78 Identities=26% Similarity=0.437 Sum_probs=71.0
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.+.|-|.|||. +..|.+|+++|.+||.|.. ++|.+|++||.+||||||.|.++++|.+||+.|||+-++.
T Consensus 188 D~~tvRvtNLse------d~~E~dL~eLf~~fg~i~r--vylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~- 258 (270)
T KOG0122|consen 188 DEATVRVTNLSE------DMREDDLEELFRPFGPITR--VYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDN- 258 (270)
T ss_pred ccceeEEecCcc------ccChhHHHHHhhccCccce--eEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccce-
Confidence 457999999998 6669999999999999999 9999999999999999999999999999999999998885
Q ss_pred eEEEEEe
Q 005140 138 HIFAVNM 144 (712)
Q Consensus 138 ~~l~v~~ 144 (712)
-+|+|-.
T Consensus 259 LILrvEw 265 (270)
T KOG0122|consen 259 LILRVEW 265 (270)
T ss_pred EEEEEEe
Confidence 3666654
No 233
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=3.6e-11 Score=115.61 Aligned_cols=219 Identities=18% Similarity=0.228 Sum_probs=149.0
Q ss_pred CCCEEEEecCCeEEEEEcCCceeccccc---ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccce-eee
Q 005140 330 KDKYFAKLGKNMISVYETESFTLIDKKS---LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEEL-RQK 405 (712)
Q Consensus 330 dg~~la~~~d~~i~iwd~~~~~~~~~~~---~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~ 405 (712)
||.++.+.++|.+++|....+.+-.... ...+++..+.-+|....|+.+ ||..+...+-+|++...+.+ ..+
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~----GGke~~n~lkiwdle~~~qiw~aK 190 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVAT----GGKENINELKIWDLEQSKQIWSAK 190 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEec----Cchhcccceeeeecccceeeeecc
Confidence 7777877779999999988554222111 122456777777776666543 54542233334443322111 111
Q ss_pred eeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeC--CCEEEEEEc
Q 005140 406 NLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK--GHRFAVIHG 483 (712)
Q Consensus 406 ~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~--g~~l~~~~~ 483 (712)
++ |+ .+| .+.+ .-.++++.|-|. ...||+++.
T Consensus 191 Nv-----------pn-D~L-------------------------------~LrV---PvW~tdi~Fl~g~~~~~fat~T~ 224 (412)
T KOG3881|consen 191 NV-----------PN-DRL-------------------------------GLRV---PVWITDIRFLEGSPNYKFATITR 224 (412)
T ss_pred CC-----------CC-ccc-------------------------------ccee---eeeeccceecCCCCCceEEEEec
Confidence 10 00 000 0111 224455667665 788999998
Q ss_pred CCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee---ccccce
Q 005140 484 DSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT---AEHFMA 558 (712)
Q Consensus 484 d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~---~~~~~v 558 (712)
-+ .|++||.+.+.. ++..+. .++++++...|+|++|++|.. .|.+..||+++++++.. +-.+.+
T Consensus 225 ~h---qvR~YDt~~qRR-----PV~~fd~~E~~is~~~l~p~gn~Iy~gn~---~g~l~~FD~r~~kl~g~~~kg~tGsi 293 (412)
T KOG3881|consen 225 YH---QVRLYDTRHQRR-----PVAQFDFLENPISSTGLTPSGNFIYTGNT---KGQLAKFDLRGGKLLGCGLKGITGSI 293 (412)
T ss_pred ce---eEEEecCcccCc-----ceeEeccccCcceeeeecCCCcEEEEecc---cchhheecccCceeeccccCCccCCc
Confidence 88 999999975443 555544 568999999999999999988 99999999999888764 445899
Q ss_pred eeEEECCCCCEEEEEEccceeccccEEEEEecCc-eeeee-cccceeeeEEecCCCCC
Q 005140 559 TDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK-LLYRT-LKDHFFQFLWRPRPPSF 614 (712)
Q Consensus 559 ~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~-~~~~~-~~~~i~~~~w~p~~~~l 614 (712)
+++..+|.+++||+++. |.-++|+|+..+ ++++. -..+++.+.++++-+..
T Consensus 294 rsih~hp~~~~las~GL-----DRyvRIhD~ktrkll~kvYvKs~lt~il~~~~~n~e 346 (412)
T KOG3881|consen 294 RSIHCHPTHPVLASCGL-----DRYVRIHDIKTRKLLHKVYVKSRLTFILLRDDVNIE 346 (412)
T ss_pred ceEEEcCCCceEEeecc-----ceeEEEeecccchhhhhhhhhccccEEEecCCcccc
Confidence 99999999999999999 999999999874 44444 44778888998875433
No 234
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.43 E-value=1.6e-09 Score=111.97 Aligned_cols=279 Identities=13% Similarity=0.157 Sum_probs=161.8
Q ss_pred cccceEEEcCCCcEEEEEecC----c-eEEeeccc---CcceeeeecCC--CeeEEEecCCCCEEEEEcCCCCCCCcCCC
Q 005140 214 WTESFVQWSPLGTYLATVHRQ----G-AAVWGGAN---TFNRLMRYAHP--QVKLIDFSPGEKYLVTYSSHEPSNPRDAN 283 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~~----~-i~iw~~~~---~~~~~~~~~~~--~v~~i~~Spdg~~l~t~s~d~~~~~~~~~ 283 (712)
..-+.++++|++++|.+.... + |..|.+.. +...+.+.... ....++++|++++|+++....
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~-------- 108 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGG-------- 108 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTT--------
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccC--------
Confidence 344679999999999998773 3 66776652 22344444422 367899999999999987641
Q ss_pred ccEEEEEEccC-Cceeee--ccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCce--ecccc
Q 005140 284 RVVINIFDVRT-GKVMRD--FKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFT--LIDKK 356 (712)
Q Consensus 284 ~~~I~iwd~~~-g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~--~~~~~ 356 (712)
+.|.++++.. |..... ...+...- .....+.+-.-.++.|+| ++++++... ...|.+|++.... +....
T Consensus 109 -g~v~v~~l~~~g~l~~~~~~~~~~g~g--~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~ 184 (345)
T PF10282_consen 109 -GSVSVFPLDDDGSLGEVVQTVRHEGSG--PNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLTPVD 184 (345)
T ss_dssp -TEEEEEEECTTSEEEEEEEEEESEEEE--SSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEEEEE
T ss_pred -CeEEEEEccCCcccceeeeecccCCCC--CcccccccccceeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEEEee
Confidence 7899999976 443222 11110000 000001111111589999 999888776 7789999987544 32211
Q ss_pred --cc-cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc--ceeeeeee----e--ecceeEEECcCCCEEE
Q 005140 357 --SL-KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE--ELRQKNLF----S--VSDCKMYWQSSGDYLA 425 (712)
Q Consensus 357 --~~-~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~----~--~~~~~~~~s~~g~~l~ 425 (712)
.. ...+...+.|+|+++++.+. ....+.+.++.++..... .+...... . .....+..+|+|++|+
T Consensus 185 ~~~~~~G~GPRh~~f~pdg~~~Yv~----~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~ly 260 (345)
T PF10282_consen 185 SIKVPPGSGPRHLAFSPDGKYAYVV----NELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLY 260 (345)
T ss_dssp EEECSTTSSEEEEEE-TTSSEEEEE----ETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEE
T ss_pred ccccccCCCCcEEEEcCCcCEEEEe----cCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEE
Confidence 11 22458899999999988663 223444555555522322 12111111 1 1344577899999998
Q ss_pred EEEcccccccccccccEEEEEEecCCcceeEE-EecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCce
Q 005140 426 VKVDRYTKTKKSTYTGFELFRIKERDIPIEVL-ELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRV 504 (712)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~ 504 (712)
+..... ..+.+|+++........+ .++........++++|+|++|+++..+.. .|.+|+++...+. +
T Consensus 261 vsnr~~--------~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~--~v~vf~~d~~tG~--l 328 (345)
T PF10282_consen 261 VSNRGS--------NSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSN--TVSVFDIDPDTGK--L 328 (345)
T ss_dssp EEECTT--------TEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTT--EEEEEEEETTTTE--E
T ss_pred EEeccC--------CEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCC--eEEEEEEeCCCCc--E
Confidence 866542 237889986543333222 23222445889999999999999987653 8999998654432 2
Q ss_pred eEEEE-eCCCceeEEEE
Q 005140 505 SKLTT-LKGKQANALFW 520 (712)
Q Consensus 505 ~~~~~-~~~~~v~~l~~ 520 (712)
..... +......|+.|
T Consensus 329 ~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 329 TPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp EEEEEEEESSSEEEEEE
T ss_pred EEecccccCCCCEEEeC
Confidence 23322 33334566655
No 235
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=9.5e-11 Score=123.01 Aligned_cols=209 Identities=11% Similarity=-0.006 Sum_probs=129.6
Q ss_pred eEEEecCCCCCCCcccccCCCcccceEEEcCCCcE-EEEEecC-c---eEEeecccCcceeeeecCCC-eeEEEecCCCC
Q 005140 193 TEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTY-LATVHRQ-G---AAVWGGANTFNRLMRYAHPQ-VKLIDFSPGEK 266 (712)
Q Consensus 193 ~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~-lat~~~~-~---i~iw~~~~~~~~~~~~~~~~-v~~i~~Spdg~ 266 (712)
...+|-.+..+.....+.... ......|||||+. +++.+.. + |.++|+. +++...-...++ .....|||||+
T Consensus 168 ~~~l~~~d~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~-tg~~~~lt~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 168 KSNIVLADYTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLY-TGKKEKIASSQGMLVVSDVSKDGS 245 (419)
T ss_pred cceEEEECCCCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECC-CCcEEEEecCCCcEEeeEECCCCC
Confidence 445666555554444444443 6778999999985 6655543 2 6788987 554433333333 66789999999
Q ss_pred EEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCc-ccccCCCCCcCCCCcCeEEecCCCCCEEEEecC--C--e
Q 005140 267 YLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSAD-EFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGK--N--M 341 (712)
Q Consensus 267 ~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d--~--~ 341 (712)
.|+...... ++..|.++|+.++.. +.+..+.. .. ...|+| ||+.|+..++ + .
T Consensus 246 ~la~~~~~~-------g~~~Iy~~dl~~g~~-~~LT~~~~~d~--------------~p~~SP-DG~~I~F~Sdr~g~~~ 302 (419)
T PRK04043 246 KLLLTMAPK-------GQPDIYLYDTNTKTL-TQITNYPGIDV--------------NGNFVE-DDKRIVFVSDRLGYPN 302 (419)
T ss_pred EEEEEEccC-------CCcEEEEEECCCCcE-EEcccCCCccC--------------ccEECC-CCCEEEEEECCCCCce
Confidence 887665431 125799999877764 34433322 22 368999 9998888873 2 6
Q ss_pred EEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCC--CCCeEEEEEecCCccceeeeeeeeecceeEEECc
Q 005140 342 ISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGG--NQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS 419 (712)
Q Consensus 342 i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 419 (712)
|.++++.++.... +...+.....|||+|+.|++........ .+...|+++++....... .... .......|+|
T Consensus 303 Iy~~dl~~g~~~r---lt~~g~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SP 377 (419)
T PRK04043 303 IFMKKLNSGSVEQ---VVFHGKNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSS 377 (419)
T ss_pred EEEEECCCCCeEe---CccCCCcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECC
Confidence 7777887665422 1111223458999999999854321000 033688888876654221 1111 1233578999
Q ss_pred CCCEEEEEEccc
Q 005140 420 SGDYLAVKVDRY 431 (712)
Q Consensus 420 ~g~~l~~~~~~~ 431 (712)
||+.|++.+..+
T Consensus 378 DG~~I~f~~~~~ 389 (419)
T PRK04043 378 DGGSIMFIKYLG 389 (419)
T ss_pred CCCEEEEEEccC
Confidence 999999887653
No 236
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.43 E-value=3.3e-13 Score=115.20 Aligned_cols=82 Identities=29% Similarity=0.357 Sum_probs=75.7
Q ss_pred cCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 005140 56 SGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135 (712)
Q Consensus 56 ~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 135 (712)
.+-+.+|||+||+. ...++.|.++|-+.|+|.. ++||.|+.|++.+||||++|.++|+|..|++.||..+|-
T Consensus 6 rnqd~tiyvgnld~------kvs~~~l~EL~iqagpVv~--i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLY 77 (203)
T KOG0131|consen 6 RNQDATLYVGNLDE------KVSEELLYELFIQAGPVVN--LHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLY 77 (203)
T ss_pred cCCCceEEEecCCH------HHHHHHHHHHHHhcCceee--eecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhc
Confidence 34566999999997 5668999999999999999 999999999999999999999999999999999999999
Q ss_pred CceEEEEEeec
Q 005140 136 RAHIFAVNMFD 146 (712)
Q Consensus 136 ~~~~l~v~~~~ 146 (712)
++ +++|+...
T Consensus 78 gr-pIrv~kas 87 (203)
T KOG0131|consen 78 GR-PIRVNKAS 87 (203)
T ss_pred Cc-eeEEEecc
Confidence 86 99999877
No 237
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.42 E-value=1.9e-14 Score=122.25 Aligned_cols=81 Identities=30% Similarity=0.409 Sum_probs=74.4
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+..|||+|||. +.+|.+|.-+|++||+|++ |.+.+|+.||++|||||+.|++......|+.+|||..+.++
T Consensus 34 dsA~Iyiggl~~------~LtEgDil~VFSqyGe~vd--inLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gR 105 (219)
T KOG0126|consen 34 DSAYIYIGGLPY------ELTEGDILCVFSQYGEIVD--INLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGR 105 (219)
T ss_pred cceEEEECCCcc------cccCCcEEEEeeccCceEE--EEEEecCCCCcccceEEEEecCccceEEEEeccCCceecce
Confidence 467999999998 7779999999999999999 99999999999999999999999999999999999999986
Q ss_pred eEEEEEeecc
Q 005140 138 HIFAVNMFDD 147 (712)
Q Consensus 138 ~~l~v~~~~~ 147 (712)
+++|-....
T Consensus 106 -tirVDHv~~ 114 (219)
T KOG0126|consen 106 -TIRVDHVSN 114 (219)
T ss_pred -eEEeeeccc
Confidence 888766543
No 238
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=4.3e-11 Score=128.30 Aligned_cols=289 Identities=15% Similarity=0.224 Sum_probs=182.3
Q ss_pred cceEEEcCCCcEEEEEec-CceEEeecccCcceeeeecCC-----CeeEEEecC--CCCEEEEEcCCCCCCCcCCCccEE
Q 005140 216 ESFVQWSPLGTYLATVHR-QGAAVWGGANTFNRLMRYAHP-----QVKLIDFSP--GEKYLVTYSSHEPSNPRDANRVVI 287 (712)
Q Consensus 216 v~~v~~Spdg~~lat~~~-~~i~iw~~~~~~~~~~~~~~~-----~v~~i~~Sp--dg~~l~t~s~d~~~~~~~~~~~~I 287 (712)
-..+.|+|-...++++.. +.|.|||.+ ....+..|+.. .|+.+.+-. |...|++++.| |.|
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e-~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~d----------GvI 1135 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWE-KGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSD----------GVI 1135 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecc-cCceeccccCCCCCCCccceeeeecccchhheeeeccC----------ceE
Confidence 456788888888888874 458999999 88887777532 488888765 45689999999 999
Q ss_pred EEEEc-cCC----ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceeccccccccc-
Q 005140 288 NIFDV-RTG----KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVE- 361 (712)
Q Consensus 288 ~iwd~-~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~~- 361 (712)
+||+- .++ +.+..+.+-.+.. .+..+... .+.|-.+.|.++++|.-..|+|||+..-.++........
T Consensus 1136 RIwk~y~~~~~~~eLVTaw~~Ls~~~-----~~~r~~~~-v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t 1209 (1387)
T KOG1517|consen 1136 RIWKDYADKWKKPELVTAWSSLSDQL-----PGARGTGL-VVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSST 1209 (1387)
T ss_pred EEecccccccCCceeEEeeccccccC-----ccCCCCCe-eeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCc
Confidence 99973 222 3344433322211 01111111 467776344555555578999999986554433322211
Q ss_pred CeeeEEEC-CCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccc
Q 005140 362 NVMDFSWS-PTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 440 (712)
Q Consensus 362 ~v~~~~~s-p~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~ 440 (712)
.|+.++-+ +.|+.|+. |.+|+.++++....+...
T Consensus 1210 ~vTaLS~~~~~gn~i~A-----GfaDGsvRvyD~R~a~~d---------------------------------------- 1244 (1387)
T KOG1517|consen 1210 LVTALSADLVHGNIIAA-----GFADGSVRVYDRRMAPPD---------------------------------------- 1244 (1387)
T ss_pred cceeecccccCCceEEE-----eecCCceEEeecccCCcc----------------------------------------
Confidence 23433322 12455555 555555555443332211
Q ss_pred cEEEEEEecCCcceeEEEecCCCCc--eEEEEEeeCCCE-EEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-CCcee
Q 005140 441 GFELFRIKERDIPIEVLELDNKNDK--IIAFAWEPKGHR-FAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQAN 516 (712)
Q Consensus 441 ~~~l~~l~~~~~~~~~~~l~~h~~~--v~~~~~sp~g~~-l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~ 516 (712)
........|+.. |..+.+.+.|-. |++++.+| .|++||++......-......-. +...+
T Consensus 1245 -------------s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G---~I~~~DlR~~~~e~~~~iv~~~~yGs~lT 1308 (1387)
T KOG1517|consen 1245 -------------SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDG---DIQLLDLRMSSKETFLTIVAHWEYGSALT 1308 (1387)
T ss_pred -------------ccceeecccCCcccceeEEeecCCCcceeeeccCC---eEEEEecccCcccccceeeeccccCccce
Confidence 111112244554 888888887654 99999999 99999998632111111122122 22489
Q ss_pred EEEEccCCCeEEEEeccCCCceEEEEECCcceeee--------eccccceeeEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 517 ALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA--------TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 517 ~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~--------~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
++..+++...+|+|+ .+.|.||++.+.++.. ....+.+++++|+|---.+|+|+. |+.|.||.
T Consensus 1309 al~VH~hapiiAsGs----~q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~-----Ds~V~iYs 1379 (1387)
T KOG1517|consen 1309 ALTVHEHAPIIASGS----AQLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSA-----DSTVSIYS 1379 (1387)
T ss_pred eeeeccCCCeeeecC----cceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccC-----CceEEEee
Confidence 999999999999987 4899999998433221 123367789999999888999988 99999998
Q ss_pred ecC
Q 005140 589 FNG 591 (712)
Q Consensus 589 ~~g 591 (712)
...
T Consensus 1380 ~~k 1382 (1387)
T KOG1517|consen 1380 CEK 1382 (1387)
T ss_pred cCC
Confidence 764
No 239
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=2.2e-11 Score=114.99 Aligned_cols=286 Identities=12% Similarity=0.186 Sum_probs=179.3
Q ss_pred ceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcC--CCcEEEEEecCc-eEEeecccCcceeeee---cCCC-
Q 005140 183 DQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSP--LGTYLATVHRQG-AAVWGGANTFNRLMRY---AHPQ- 255 (712)
Q Consensus 183 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Sp--dg~~lat~~~~~-i~iw~~~~~~~~~~~~---~~~~- 255 (712)
..+++..+++.+.+++. ..++....++++..+++.+.|.. .+..+.+++.|| |++||+. ......++ .+++
T Consensus 41 ~~vav~lSngsv~lyd~-~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R-s~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDK-GTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR-SQAESARISWTQQSGT 118 (376)
T ss_pred eeEEEEecCCeEEEEec-cchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee-cchhhhheeccCCCCC
Confidence 35788899999999998 45778888999999999999987 567899999998 8999998 66655544 3443
Q ss_pred -eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCce-eeec-cCCCcccccCCCCCcCCCCcCeEEecCCCCC
Q 005140 256 -VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKV-MRDF-KGSADEFAVGGTGGVAGVSWPVFRWGGGKDK 332 (712)
Q Consensus 256 -v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~ 332 (712)
-.+++..-.++.+++|..-.- ..-.|.+||++..+. ++.+ ..|.+.++ +++|.|++.+
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~~------s~A~v~lwDvR~~qq~l~~~~eSH~DDVT-------------~lrFHP~~pn 179 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELTR------SDASVVLWDVRSEQQLLRQLNESHNDDVT-------------QLRFHPSDPN 179 (376)
T ss_pred cceEeeccCcCCeEEecccccc------CceEEEEEEeccccchhhhhhhhccCcce-------------eEEecCCCCC
Confidence 556666667788887754311 125799999988776 5554 45666664 7999996778
Q ss_pred EEEEec-CCeEEEEEcCCcee---cccccccccCeeeEEECCCC--CeEEEEeecCCCCCCCeEEEEEecCCccceeeee
Q 005140 333 YFAKLG-KNMISVYETESFTL---IDKKSLKVENVMDFSWSPTD--PIISLFVPELGGGNQPARVSLVQIPSKEELRQKN 406 (712)
Q Consensus 333 ~la~~~-d~~i~iwd~~~~~~---~~~~~~~~~~v~~~~~sp~~--~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 406 (712)
.|++++ ||-|.|||+..-.. +....-+...|..+.|..++ ++.+. +......+|.++-.+ ...
T Consensus 180 lLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~cl------TH~Etf~~~ele~~~--~~~--- 248 (376)
T KOG1188|consen 180 LLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCL------THMETFAIYELEDGS--EET--- 248 (376)
T ss_pred eEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEE------EccCceeEEEccCCC--hhh---
Confidence 999999 99999999874321 11111234458999999887 43332 234444555443322 111
Q ss_pred eeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee-CCCEEEEEEcCC
Q 005140 407 LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHRFAVIHGDS 485 (712)
Q Consensus 407 ~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~~~~~d~ 485 (712)
|.+.-...+.-.. . .+ ....+... .+| ++..+++++++.
T Consensus 249 ----------~~~~~~~~~~d~r--~-----------~~----------------~~dY~I~~-~~~~~~~~~~l~g~~~ 288 (376)
T KOG1188|consen 249 ----------WLENPDVSADDLR--K-----------ED----------------NCDYVINE-HSPGDKDTCALAGTDS 288 (376)
T ss_pred ----------cccCccchhhhHH--h-----------hh----------------hhhheeec-ccCCCcceEEEecccc
Confidence 1111111000000 0 00 00111111 122 445555655532
Q ss_pred CCCeEEEEEeecccccCceeEEEEeCCC---ceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 486 PRPDISFYSMRTAQHAGRVSKLTTLKGK---QANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 486 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~---~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
. ...++-+...........+..+.++ .|.++.|...+.++++|+. ||.|.+|..+
T Consensus 289 n--~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGE---DG~l~~Wk~~ 346 (376)
T KOG1188|consen 289 N--KGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGE---DGLLQAWKVE 346 (376)
T ss_pred C--ceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCC---CceEEEEecC
Confidence 1 5666655431111112244455543 4688999999999999998 9999999853
No 240
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=9.3e-11 Score=105.49 Aligned_cols=258 Identities=15% Similarity=0.210 Sum_probs=168.7
Q ss_pred CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC----------ceeeeccCCCcccccCCCCCcCCCCcC
Q 005140 253 HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG----------KVMRDFKGSADEFAVGGTGGVAGVSWP 322 (712)
Q Consensus 253 ~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (712)
+..|..-+|||.++||+.|+.+ |+|.++.+.+- ..+-.+++|..++.
T Consensus 10 ~~tvf~qa~sp~~~~l~agn~~----------G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy------------- 66 (325)
T KOG0649|consen 10 YNTVFAQAISPSKQYLFAGNLF----------GDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIY------------- 66 (325)
T ss_pred HHHHHHHhhCCcceEEEEecCC----------CeEEEEEehhhhccccCCCCCcceeeccccCCCee-------------
Confidence 3346777899999999999999 99999987431 23344456655542
Q ss_pred eEEecCCCCCEEEEecCCeEEEEEcCCcee-cc------------cccccccCeeeEEECCCCCeEEEEeecCCCCCCCe
Q 005140 323 VFRWGGGKDKYFAKLGKNMISVYETESFTL-ID------------KKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPA 389 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~d~~i~iwd~~~~~~-~~------------~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~ 389 (712)
.++|. +.+|.+++||.|+-|....... .. .-....+.|+.+...|..+.|.+ +++| .
T Consensus 67 ~~~f~---d~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~-----AgGD--~ 136 (325)
T KOG0649|consen 67 YLAFH---DDFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF-----AGGD--G 136 (325)
T ss_pred eeeee---hhheeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE-----ecCC--e
Confidence 46664 3688889999999987653221 00 00122345777777777666666 3333 3
Q ss_pred EEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEE
Q 005140 390 RVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAF 469 (712)
Q Consensus 390 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~ 469 (712)
.++.+++.+++ -+.++.+|.+.|+++
T Consensus 137 ~~y~~dlE~G~------------------------------------------------------i~r~~rGHtDYvH~v 162 (325)
T KOG0649|consen 137 VIYQVDLEDGR------------------------------------------------------IQREYRGHTDYVHSV 162 (325)
T ss_pred EEEEEEecCCE------------------------------------------------------EEEEEcCCcceeeee
Confidence 33333332211 114567999999999
Q ss_pred EEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC---------CceeEEEEccCCCeEEEEeccCCCceEE
Q 005140 470 AWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG---------KQANALFWSPSGRFIVLAGLKGFNGQLE 540 (712)
Q Consensus 470 ~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~---------~~v~~l~~spdg~~l~~~~~~~~dg~v~ 540 (712)
+--.....+.+++.|| ++++||.++++.. +.+..... ..|.+++ -+..++++|+ ...+.
T Consensus 163 v~R~~~~qilsG~EDG---tvRvWd~kt~k~v---~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGg----Gp~ls 230 (325)
T KOG0649|consen 163 VGRNANGQILSGAEDG---TVRVWDTKTQKHV---SMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGG----GPKLS 230 (325)
T ss_pred eecccCcceeecCCCc---cEEEEecccccee---EEeccccChhhcCcccCceeEEEe--ccCceEEecC----CCcee
Confidence 8866666788999999 9999999886632 12222111 1233343 4566888887 57899
Q ss_pred EEECCcceeeeeccc-cceeeEEECCCCCEEEEEEccceeccccEEEEEecCceeeeecc--cceeeeEEecCCCCCCC
Q 005140 541 FYNVDELETMATAEH-FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLK--DHFFQFLWRPRPPSFLT 616 (712)
Q Consensus 541 iwd~~~~~~~~~~~~-~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~~~--~~i~~~~w~p~~~~l~s 616 (712)
+|.++..+......- ..+..+.|..| .+++++. .+.+.-|.++|.+....+. ...+...|+-.+-.++|
T Consensus 231 lwhLrsse~t~vfpipa~v~~v~F~~d--~vl~~G~-----g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s 302 (325)
T KOG0649|consen 231 LWHLRSSESTCVFPIPARVHLVDFVDD--CVLIGGE-----GNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFIS 302 (325)
T ss_pred EEeccCCCceEEEecccceeEeeeecc--eEEEecc-----ccceeeeeeccEEEEeccCCccceeeecccCCceEEEE
Confidence 999998777665433 56667777654 5777776 6899999999987766644 34666777766654444
No 241
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=2.2e-13 Score=119.36 Aligned_cols=81 Identities=27% Similarity=0.407 Sum_probs=75.7
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
.-.++|||+||.. ++.++.|...|-+||.|+. |.+|+|.+++++||||||+|.-.|+|..||.+||+.+|.+
T Consensus 8 ~~KrtlYVGGlad------eVtekvLhaAFIPFGDI~d--IqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~G 79 (298)
T KOG0111|consen 8 NQKRTLYVGGLAD------EVTEKVLHAAFIPFGDIKD--IQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFG 79 (298)
T ss_pred ccceeEEeccchH------HHHHHHHHhccccccchhh--cccccchhcccccceeEEEeeccchhHHHhhcCchhhhcc
Confidence 3457999999997 7789999999999999999 9999999999999999999999999999999999999999
Q ss_pred ceEEEEEeec
Q 005140 137 AHIFAVNMFD 146 (712)
Q Consensus 137 ~~~l~v~~~~ 146 (712)
+ +++||...
T Consensus 80 r-tirVN~Ak 88 (298)
T KOG0111|consen 80 R-TIRVNLAK 88 (298)
T ss_pred e-eEEEeecC
Confidence 6 99999754
No 242
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=3.8e-09 Score=101.65 Aligned_cols=297 Identities=13% Similarity=0.146 Sum_probs=182.2
Q ss_pred EEEEEe---cCceEEeecccCcce---eeee-cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC--Cce
Q 005140 227 YLATVH---RQGAAVWGGANTFNR---LMRY-AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT--GKV 297 (712)
Q Consensus 227 ~lat~~---~~~i~iw~~~~~~~~---~~~~-~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~--g~~ 297 (712)
|+.|.. ..+|.+|++.+.... +... ....++.|+|+|++++|.++..+.. .+.|..|.+.. |++
T Consensus 6 YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~-------~ggvaay~iD~~~G~L 78 (346)
T COG2706 6 YIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGE-------EGGVAAYRIDPDDGRL 78 (346)
T ss_pred EEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCC-------cCcEEEEEEcCCCCeE
Confidence 455555 567999988722222 2222 2445999999999999999887611 15566666643 543
Q ss_pred e--eeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCC-ceeccc--ccccccC--------
Q 005140 298 M--RDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETES-FTLIDK--KSLKVEN-------- 362 (712)
Q Consensus 298 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~-~~~~~~--~~~~~~~-------- 362 (712)
- .......... ..++.++ +|++++++. .|.|.++-+.. |.+... ...|.+.
T Consensus 79 t~ln~~~~~g~~p-------------~yvsvd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~ 144 (346)
T COG2706 79 TFLNRQTLPGSPP-------------CYVSVDE-DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQES 144 (346)
T ss_pred EEeeccccCCCCC-------------eEEEECC-CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccC
Confidence 2 1111111110 1589999 999999988 89999999865 433221 1123332
Q ss_pred --eeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceee--ee-eeeecceeEEECcCCCEEEEEEccccccccc
Q 005140 363 --VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ--KN-LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKS 437 (712)
Q Consensus 363 --v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~-~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~ 437 (712)
+....+.|++++|++. .-+.-+|.+|++..++.... .. ........+.|+|+|++..+...-.
T Consensus 145 ~h~H~a~~tP~~~~l~v~------DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~------ 212 (346)
T COG2706 145 PHVHSANFTPDGRYLVVP------DLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELN------ 212 (346)
T ss_pred CccceeeeCCCCCEEEEe------ecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccC------
Confidence 7888999999999873 34555777777765432211 11 1233445678999999887765432
Q ss_pred ccccEEEEEEecCCcceeEEE----ec---CCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEe
Q 005140 438 TYTGFELFRIKERDIPIEVLE----LD---NKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL 510 (712)
Q Consensus 438 ~~~~~~l~~l~~~~~~~~~~~----l~---~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~ 510 (712)
+.+.+|...........+. ++ .......++..+|||++|.++.... +.|.+|.+....+. +..+...
T Consensus 213 --stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~--dsI~~f~V~~~~g~--L~~~~~~ 286 (346)
T COG2706 213 --STVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGH--DSIAVFSVDPDGGK--LELVGIT 286 (346)
T ss_pred --CEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCC--CeEEEEEEcCCCCE--EEEEEEe
Confidence 2366676665433322222 11 1244567899999999988875532 37999998754432 3333333
Q ss_pred C--CCceeEEEEccCCCeEEEEeccCCCceEEEEECC--cceeeee---ccccceeeEEEC
Q 005140 511 K--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD--ELETMAT---AEHFMATDVEWD 564 (712)
Q Consensus 511 ~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~--~~~~~~~---~~~~~v~~~~~s 564 (712)
. +..-..+.++|.|++|++++.. ...|.+|..+ +|++-.. .......|+.|.
T Consensus 287 ~teg~~PR~F~i~~~g~~Liaa~q~--sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 287 PTEGQFPRDFNINPSGRFLIAANQK--SDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred ccCCcCCccceeCCCCCEEEEEccC--CCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 2 3346889999999999999863 3457787665 5655433 233445555553
No 243
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.40 E-value=1.1e-11 Score=118.90 Aligned_cols=183 Identities=18% Similarity=0.285 Sum_probs=133.9
Q ss_pred CceEEEEEC-CeeEEEecCCCCC------CCcccccCCCcccceEEEcCCC-cEEEEEecCc-eEEeecccCcceeeeec
Q 005140 182 RDQFVIRSG-TDTEVLWNDARHL------KPEPVYKRSYWTESFVQWSPLG-TYLATVHRQG-AAVWGGANTFNRLMRYA 252 (712)
Q Consensus 182 ~~~~~~~~~-~~~~~~w~~~~~~------~~~~~~~~~~~~v~~v~~Spdg-~~lat~~~~~-i~iw~~~~~~~~~~~~~ 252 (712)
+|+.+++++ |.++.+|..+..+ .+...+.+|+..|..++|+|.- +.|++++.|. |.||++. ++..+.++.
T Consensus 93 nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~-tgeali~l~ 171 (472)
T KOG0303|consen 93 NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVG-TGEALITLD 171 (472)
T ss_pred CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEecc-CCceeeecC
Confidence 345555444 5666799986433 4567789999999999999964 4677777777 7899999 888888888
Q ss_pred CCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC
Q 005140 253 HPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 331 (712)
Q Consensus 253 ~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg 331 (712)
|++ |.++.|+.||.+|+|.+.| ..|+|||.++|+.+..-.+|.+... +...|-. +|
T Consensus 172 hpd~i~S~sfn~dGs~l~TtckD----------KkvRv~dpr~~~~v~e~~~heG~k~------------~Raifl~-~g 228 (472)
T KOG0303|consen 172 HPDMVYSMSFNRDGSLLCTTCKD----------KKVRVIDPRRGTVVSEGVAHEGAKP------------ARAIFLA-SG 228 (472)
T ss_pred CCCeEEEEEeccCCceeeeeccc----------ceeEEEcCCCCcEeeecccccCCCc------------ceeEEec-cC
Confidence 888 9999999999999999999 8999999999999988877765431 1467888 89
Q ss_pred CEEEEec----CCeEEEEEcCCcee-cccccc-cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEE
Q 005140 332 KYFAKLG----KNMISVYETESFTL-IDKKSL-KVENVMDFSWSPTDPIISLFVPELGGGNQPARVS 392 (712)
Q Consensus 332 ~~la~~~----d~~i~iwd~~~~~~-~~~~~~-~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~ 392 (712)
+++.++- +..+.+|+...... +.-..+ ...+|.---|.||.+.|.++ |.+|+.++.+
T Consensus 229 ~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~----GKGD~~IRYy 291 (472)
T KOG0303|consen 229 KIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLC----GKGDSSIRYF 291 (472)
T ss_pred ceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEE----ecCCcceEEE
Confidence 8555553 68899999765431 111111 23356666678887777653 3455555543
No 244
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=4.2e-11 Score=114.60 Aligned_cols=280 Identities=12% Similarity=0.206 Sum_probs=177.4
Q ss_pred CCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc------CCceeeeccCCC-cccccCCCCCcCCCCcCeE
Q 005140 253 HPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR------TGKVMRDFKGSA-DEFAVGGTGGVAGVSWPVF 324 (712)
Q Consensus 253 ~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~------~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 324 (712)
|.+ |..+.||.+|++||+|+.| ..+++|++. +-+++.....|. ..+ + ++
T Consensus 55 H~GCiNAlqFS~N~~~L~SGGDD----------~~~~~W~~de~~~~k~~KPI~~~~~~H~SNI------------F-~L 111 (609)
T KOG4227|consen 55 HTGCINALQFSHNDRFLASGGDD----------MHGRVWNVDELMVRKTPKPIGVMEHPHRSNI------------F-SL 111 (609)
T ss_pred hccccceeeeccCCeEEeecCCc----------ceeeeechHHHHhhcCCCCceeccCccccce------------E-EE
Confidence 555 9999999999999999999 899999974 234444443333 222 2 68
Q ss_pred EecCCCCCEEEEec-CCeEEEEEcCCceecccccc--cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc-
Q 005140 325 RWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSL--KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE- 400 (712)
Q Consensus 325 ~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~- 400 (712)
.|.. ...++.+++ +++|...|+.+.+.+..... ..+.|..+..+|.++.+++ .+.+ .+|.+|++....
T Consensus 112 ~F~~-~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~-----~t~~--~~V~~~D~Rd~~~ 183 (609)
T KOG4227|consen 112 EFDL-ENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIV-----VTRA--KLVSFIDNRDRQN 183 (609)
T ss_pred EEcc-CCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEE-----EecC--ceEEEEeccCCCC
Confidence 8988 778888888 99999999998876654322 2236999999999999988 3344 355566654433
Q ss_pred cee--eeeeeeecceeEEECcCCCEEEE-EEcccccccccccccEEEEEEecCCcceeEEE----ecCCCCceEEEEEee
Q 005140 401 ELR--QKNLFSVSDCKMYWQSSGDYLAV-KVDRYTKTKKSTYTGFELFRIKERDIPIEVLE----LDNKNDKIIAFAWEP 473 (712)
Q Consensus 401 ~~~--~~~~~~~~~~~~~~s~~g~~l~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~----l~~h~~~v~~~~~sp 473 (712)
++. ........-...-|+|....|+. ....+ +..+|+++....++.... |+.....-.+..|+|
T Consensus 184 ~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~---------G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~ 254 (609)
T KOG4227|consen 184 PISLVLPANSGKNFYTAEFHPETPALILVNSETG---------GPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP 254 (609)
T ss_pred CCceeeecCCCccceeeeecCCCceeEEeccccC---------CCCceeeccccchHHhhhccccCcccchhhhheeeCC
Confidence 111 11111122233457887665444 33332 367888887655443222 211112225678999
Q ss_pred CCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC--C-----ceeEEEEccCCCeEEEEeccCCCceEEEEECCc
Q 005140 474 KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG--K-----QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE 546 (712)
Q Consensus 474 ~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~-----~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~ 546 (712)
+|+.|.+.-... .-.+||+.+.. |-.++.-++ + .+.+++|.-|- .+++|+. +-.|++|.+..
T Consensus 255 ~G~Q~msiRR~~---~P~~~D~~S~R----~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD---~~~i~~WklP~ 323 (609)
T KOG4227|consen 255 SGNQFMSIRRGK---CPLYFDFISQR----CFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSD---HWGIHIWKLPR 323 (609)
T ss_pred CCCeehhhhccC---CCEEeeeeccc----ceeEeccCCCCcceeeeeeeeeeeecce-eeeccCc---ccceEEEecCC
Confidence 999888766544 33467775422 112222111 1 24456676554 4777776 78899998752
Q ss_pred -----c-------------------ee-eeeccccceeeEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 547 -----L-------------------ET-MATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 547 -----~-------------------~~-~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
| .. +..+|..-++.+.|+|....|++++. .+.++||.
T Consensus 324 ~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGV-----E~~~KlWS 385 (609)
T KOG4227|consen 324 ANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGV-----ENSFKLWS 385 (609)
T ss_pred CccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccch-----hhheeccc
Confidence 1 11 12366777889999999888888877 89999985
No 245
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=3.4e-11 Score=129.10 Aligned_cols=285 Identities=15% Similarity=0.203 Sum_probs=179.4
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecC-CCCCEE
Q 005140 256 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGG-GKDKYF 334 (712)
Q Consensus 256 v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~dg~~l 334 (712)
...+.|+|=...++++... -.|+|||.+.++.+..|..+.... ..|. .+.+-. .|..++
T Consensus 1067 pk~~~~hpf~p~i~~ad~r----------~~i~vwd~e~~~~l~~F~n~~~~~-----t~Vs-----~l~liNe~D~aLl 1126 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDR----------ERIRVWDWEKGRLLNGFDNGAFPD-----TRVS-----DLELINEQDDALL 1126 (1387)
T ss_pred CceeeecCCCceeEEcCCc----------ceEEEEecccCceeccccCCCCCC-----Cccc-----eeeeecccchhhe
Confidence 5678889988888888866 589999999999999887765332 1222 334332 144566
Q ss_pred EEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecce
Q 005140 335 AKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDC 413 (712)
Q Consensus 335 a~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 413 (712)
.+++ ||.|+||+--.... + +..-|+ +|++=...+.. ..+.+ +
T Consensus 1127 Ltas~dGvIRIwk~y~~~~--~---~~eLVT--aw~~Ls~~~~~-------~r~~~-----------------------~ 1169 (1387)
T KOG1517|consen 1127 LTASSDGVIRIWKDYADKW--K---KPELVT--AWSSLSDQLPG-------ARGTG-----------------------L 1169 (1387)
T ss_pred eeeccCceEEEeccccccc--C---CceeEE--eeccccccCcc-------CCCCC-----------------------e
Confidence 6777 99999997431100 0 000011 23221111111 11111 1
Q ss_pred eEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEe-eCCCEEEEEEcCCCCCeEEE
Q 005140 414 KMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWE-PKGHRFAVIHGDSPRPDISF 492 (712)
Q Consensus 414 ~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~s-p~g~~l~~~~~d~~~~~v~i 492 (712)
-+.|..+..+|+++.+-.. +++|+......- ..+.. +....|+++.-+ +.|+.|++|..|| .|++
T Consensus 1170 v~dWqQ~~G~Ll~tGd~r~---------IRIWDa~~E~~~-~diP~-~s~t~vTaLS~~~~~gn~i~AGfaDG---svRv 1235 (1387)
T KOG1517|consen 1170 VVDWQQQSGHLLVTGDVRS---------IRIWDAHKEQVV-ADIPY-GSSTLVTALSADLVHGNIIAAGFADG---SVRV 1235 (1387)
T ss_pred eeehhhhCCeEEecCCeeE---------EEEEecccceeE-eeccc-CCCccceeecccccCCceEEEeecCC---ceEE
Confidence 2357666666666554333 678877642111 11111 223445555433 3579999999999 9999
Q ss_pred EEeecccccCceeEEEEeCCC----ceeEEEEccCCCe-EEEEeccCCCceEEEEECCcceeee--e--c--ccc-ceee
Q 005140 493 YSMRTAQHAGRVSKLTTLKGK----QANALFWSPSGRF-IVLAGLKGFNGQLEFYNVDELETMA--T--A--EHF-MATD 560 (712)
Q Consensus 493 ~d~~~~~~~~~~~~~~~~~~~----~v~~l~~spdg~~-l~~~~~~~~dg~v~iwd~~~~~~~~--~--~--~~~-~v~~ 560 (712)
||.+...... .+.....| +|..+.+.+.|-. |++|+. +|.|++||++...... + . ..+ ..++
T Consensus 1236 yD~R~a~~ds---~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~---~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTa 1309 (1387)
T KOG1517|consen 1236 YDRRMAPPDS---LVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ---DGDIQLLDLRMSSKETFLTIVAHWEYGSALTA 1309 (1387)
T ss_pred eecccCCccc---cceeecccCCcccceeEEeecCCCcceeeecc---CCeEEEEecccCcccccceeeeccccCcccee
Confidence 9997544321 22222222 3888999887765 889988 9999999998522111 1 1 113 4899
Q ss_pred EEECCCCCEEEEEEccceeccccEEEEEecCceeeee---------cccceeeeEEecCCCCCCChhhHHHH
Q 005140 561 VEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRT---------LKDHFFQFLWRPRPPSFLTPEKEEEI 623 (712)
Q Consensus 561 ~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~---------~~~~i~~~~w~p~~~~l~s~~~d~~i 623 (712)
+..++....||+|+. +.++||++.|+++... ..+.+.+++|+|....|+.++.|..|
T Consensus 1310 l~VH~hapiiAsGs~------q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V 1375 (1387)
T KOG1517|consen 1310 LTVHEHAPIIASGSA------QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTV 1375 (1387)
T ss_pred eeeccCCCeeeecCc------ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceE
Confidence 999999999999987 7999999999876543 23678999999998888887766543
No 246
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.39 E-value=8e-12 Score=124.61 Aligned_cols=161 Identities=16% Similarity=0.284 Sum_probs=113.9
Q ss_pred CCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec---CCCeeEEEecC--CCCEEEEEcCCCC
Q 005140 203 LKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA---HPQVKLIDFSP--GEKYLVTYSSHEP 276 (712)
Q Consensus 203 ~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~---~~~v~~i~~Sp--dg~~l~t~s~d~~ 276 (712)
...+..+++|++.|+|+.|+.||.+||+|+.|. +.|||.- ..+.+..++ ..+|.++.|-| +.+.+++|+.|
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~-~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgD-- 116 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPF-EYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGD-- 116 (758)
T ss_pred cchhhhhccccceecceeecCCCCEEeecCCcceEEeecch-hcceeeeeecccccceeEEeeeccCCCeEEEeccCc--
Confidence 445667899999999999999999999999998 9999998 777666653 44599999999 45789999999
Q ss_pred CCCcCCCccEEEEEEccCC----------ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC-CEEEEec-CCeEEE
Q 005140 277 SNPRDANRVVINIFDVRTG----------KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD-KYFAKLG-KNMISV 344 (712)
Q Consensus 277 ~~~~~~~~~~I~iwd~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg-~~la~~~-d~~i~i 344 (712)
..|+++|+... ...+.+..|...+. .++-.| ++ ..+-+++ ||+|+-
T Consensus 117 --------k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVK-------------ria~~p-~~PhtfwsasEDGtirQ 174 (758)
T KOG1310|consen 117 --------KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVK-------------RIATAP-NGPHTFWSASEDGTIRQ 174 (758)
T ss_pred --------ceEEEEecccccccccccCccchhhhhhhhhhhhh-------------heecCC-CCCceEEEecCCcceee
Confidence 89999998642 22344444544431 345556 55 5666777 999999
Q ss_pred EEcCCceecc----------cccccccCeeeEEECCCCC-eEEEEeecCCCCCCCeEEEE
Q 005140 345 YETESFTLID----------KKSLKVENVMDFSWSPTDP-IISLFVPELGGGNQPARVSL 393 (712)
Q Consensus 345 wd~~~~~~~~----------~~~~~~~~v~~~~~sp~~~-~la~~~~~~~~~~~~~~i~~ 393 (712)
||+.....-. ......-...++..+|... +|++ |+.+-.++++.
T Consensus 175 yDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laV-----GgsdpfarLYD 229 (758)
T KOG1310|consen 175 YDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAV-----GGSDPFARLYD 229 (758)
T ss_pred ecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEe-----cCCCchhhhhh
Confidence 9987421110 0111112367899999865 5666 66665555543
No 247
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=1.3e-10 Score=116.94 Aligned_cols=277 Identities=12% Similarity=0.076 Sum_probs=182.9
Q ss_pred CCCcccceEEEcCCCcEEEEEecCc--eEEeecccCcceeeeecCC--CeeEEEecCCCCEEEEEcCCCCCCCcCCCccE
Q 005140 211 RSYWTESFVQWSPLGTYLATVHRQG--AAVWGGANTFNRLMRYAHP--QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVV 286 (712)
Q Consensus 211 ~~~~~v~~v~~Spdg~~lat~~~~~--i~iw~~~~~~~~~~~~~~~--~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~ 286 (712)
.+....+.|..||||+||...+.-. |++||+. .......-+.. .|...-+|-|-..++....| .+
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydla-nLSLKFERhlDae~V~feiLsDD~SK~v~L~~D----------R~ 117 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLA-NLSLKFERHLDAEVVDFEILSDDYSKSVFLQND----------RT 117 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcc-cceeeeeecccccceeEEEeccchhhheEeecC----------ce
Confidence 4556778899999999977666544 9999998 65555544433 37777777777777777777 66
Q ss_pred EEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceecccccccccCeeeE
Q 005140 287 INIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDF 366 (712)
Q Consensus 287 I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 366 (712)
|.+-. .-|... .+..+.... .++++...-.+++.++...|.=+++..|..+.......++++++
T Consensus 118 IefHa-k~G~hy-~~RIP~~GR--------------Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v 181 (703)
T KOG2321|consen 118 IEFHA-KYGRHY-RTRIPKFGR--------------DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVV 181 (703)
T ss_pred eeehh-hcCeee-eeecCcCCc--------------cccccCCCccEEEeecCcceEEEEccccccccccccccccceee
Confidence 66543 233321 122221111 12222103355666667788888999999988887788889999
Q ss_pred EECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEE
Q 005140 367 SWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFR 446 (712)
Q Consensus 367 ~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~ 446 (712)
..++-..+|++ |+.++.+..| +...+..+.... -
T Consensus 182 ~in~~hgLla~-----Gt~~g~VEfw--DpR~ksrv~~l~-----------------------~---------------- 215 (703)
T KOG2321|consen 182 SINEEHGLLAC-----GTEDGVVEFW--DPRDKSRVGTLD-----------------------A---------------- 215 (703)
T ss_pred eecCccceEEe-----cccCceEEEe--cchhhhhheeee-----------------------c----------------
Confidence 99999999998 6556655543 322221111100 0
Q ss_pred EecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccC--
Q 005140 447 IKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPS-- 523 (712)
Q Consensus 447 l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spd-- 523 (712)
... .+ ..........|+++.|+.+|-.+++|...| .+.|||+++.... .+.... .-+|..+.|.+.
T Consensus 216 -~~~-v~--s~pg~~~~~svTal~F~d~gL~~aVGts~G---~v~iyDLRa~~pl----~~kdh~~e~pi~~l~~~~~~~ 284 (703)
T KOG2321|consen 216 -ASS-VN--SHPGGDAAPSVTALKFRDDGLHVAVGTSTG---SVLIYDLRASKPL----LVKDHGYELPIKKLDWQDTDQ 284 (703)
T ss_pred -ccc-cC--CCccccccCcceEEEecCCceeEEeeccCC---cEEEEEcccCCce----eecccCCccceeeecccccCC
Confidence 000 00 000001134589999999999999999999 9999999876531 222221 227899999876
Q ss_pred CCeEEEEeccCCCceEEEEECCcceeeeeccc-cceeeEEECCCCCEEEEEEc
Q 005140 524 GRFIVLAGLKGFNGQLEFYNVDELETMATAEH-FMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 524 g~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~-~~v~~~~~spdg~~l~t~s~ 575 (712)
+..+++.. ...++|||-.+++.+..... ..++++|+-|++..++++-.
T Consensus 285 q~~v~S~D----k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane 333 (703)
T KOG2321|consen 285 QNKVVSMD----KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANE 333 (703)
T ss_pred CceEEecc----hHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecC
Confidence 45566654 57899999999999887543 56899999999999998877
No 248
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=4.7e-12 Score=127.13 Aligned_cols=252 Identities=13% Similarity=0.242 Sum_probs=162.2
Q ss_pred cccCCCcccceEEEcCCCcEEEEEecCc-eEEeecc-------cCcceeeee-cCCC-eeEEEecCCCCEEEEEcCCCCC
Q 005140 208 VYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGA-------NTFNRLMRY-AHPQ-VKLIDFSPGEKYLVTYSSHEPS 277 (712)
Q Consensus 208 ~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~-------~~~~~~~~~-~~~~-v~~i~~Spdg~~l~t~s~d~~~ 277 (712)
.+..|...++.++|.|...-|++++.++ +.+|+++ ...+++.+| .|.+ |.|++.++++.++++|+.|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~D--- 365 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGID--- 365 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccC---
Confidence 4556888899999999999999999999 6799983 123455566 3555 9999999999999999999
Q ss_pred CCcCCCccEEEEEEccCC----------ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEE
Q 005140 278 NPRDANRVVINIFDVRTG----------KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYE 346 (712)
Q Consensus 278 ~~~~~~~~~I~iwd~~~g----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd 346 (712)
|+|+.|++... .....+.||.+.+ | .+.+|+ ....|++++ ||+++.|+
T Consensus 366 -------g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdav------------w-~l~~s~-~~~~Llscs~DgTvr~w~ 424 (577)
T KOG0642|consen 366 -------GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAV------------W-LLALSS-TKDRLLSCSSDGTVRLWE 424 (577)
T ss_pred -------ceeeeeccCCCCCcccccCcchhccceeccccce------------e-eeeecc-cccceeeecCCceEEeec
Confidence 99999976421 1234556666655 7 489999 888888888 99999999
Q ss_pred cCCceecccccc--cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEE
Q 005140 347 TESFTLIDKKSL--KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYL 424 (712)
Q Consensus 347 ~~~~~~~~~~~~--~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l 424 (712)
....... .... ..+--..+.+-.....+++ .+. +...+.+...+..
T Consensus 425 ~~~~~~~-~f~~~~e~g~Plsvd~~ss~~a~~~-------~s~--~~~~~~~~~~ev~---------------------- 472 (577)
T KOG0642|consen 425 PTEESPC-TFGEPKEHGYPLSVDRTSSRPAHSL-------ASF--RFGYTSIDDMEVV---------------------- 472 (577)
T ss_pred cCCcCcc-ccCCccccCCcceEeeccchhHhhh-------hhc--ccccccchhhhhh----------------------
Confidence 7754431 1101 1111122222211111111 000 0000000000000
Q ss_pred EEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCce
Q 005140 425 AVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRV 504 (712)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~ 504 (712)
..+.++.-.....+ .....+.-+.++|.+...+++..+. .|+++|..++.
T Consensus 473 ---------------s~~~~~~s~~~~~~-------~~~~~in~vVs~~~~~~~~~~hed~---~Ir~~dn~~~~----- 522 (577)
T KOG0642|consen 473 ---------------SDLLIFESSASPGP-------RRYPQINKVVSHPTADITFTAHEDR---SIRFFDNKTGK----- 522 (577)
T ss_pred ---------------hheeeccccCCCcc-------cccCccceEEecCCCCeeEecccCC---ceecccccccc-----
Confidence 00111111100000 1134566788999999888888888 99999987665
Q ss_pred eEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCccee
Q 005140 505 SKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET 549 (712)
Q Consensus 505 ~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~ 549 (712)
+++....+ .++++++.|+|-+|++++. |+.+.+|.+....+
T Consensus 523 -~l~s~~a~~~svtslai~~ng~~l~s~s~---d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 523 -ILHSMVAHKDSVTSLAIDPNGPYLMSGSH---DGSVRLWKLDVKTC 565 (577)
T ss_pred -cchheeeccceecceeecCCCceEEeecC---Cceeehhhccchhe
Confidence 45544434 6799999999999999999 99999999874433
No 249
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.38 E-value=1.7e-11 Score=111.57 Aligned_cols=287 Identities=16% Similarity=0.187 Sum_probs=164.0
Q ss_pred CCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec--CC-CeeEEEecCCCCEEEEEcCCCCCC
Q 005140 203 LKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA--HP-QVKLIDFSPGEKYLVTYSSHEPSN 278 (712)
Q Consensus 203 ~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~--~~-~v~~i~~Spdg~~l~t~s~d~~~~ 278 (712)
..|...+..|...++|+.|-.+++ |.+|...| +.+|.+. +...+..+. +. -|+.+.--|+ ..|.+-+.|
T Consensus 4 PdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lq-t~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd---- 76 (323)
T KOG0322|consen 4 PDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQ-TERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRD---- 76 (323)
T ss_pred CCCeeEeccccchheehhhccchh-hhcccccceEEEEEee-cCccchhhhhhccceeeceeecCC-cchhhcCCC----
Confidence 345556678999999999998886 78888888 7799999 666554443 33 3888888887 567888888
Q ss_pred CcCCCccEEEEEEccCCcee--eeccCCCcccccCCCCCcCCCCcCeEEecCCCCC----EEEEecCC--eEEEEEcCCc
Q 005140 279 PRDANRVVINIFDVRTGKVM--RDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK----YFAKLGKN--MISVYETESF 350 (712)
Q Consensus 279 ~~~~~~~~I~iwd~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~----~la~~~d~--~i~iwd~~~~ 350 (712)
..+.+|++.-+..+ +.+.... +.+.-++.++ .++ .++.-+.+ .+.+-|....
T Consensus 77 ------~~L~lw~ia~s~~i~i~Si~~ns-------------lgFCrfSl~~-~~k~~eqll~yp~rgsde~h~~D~g~~ 136 (323)
T KOG0322|consen 77 ------PLLILWTIAYSAFISIHSIVVNS-------------LGFCRFSLVK-KPKNSEQLLEYPSRGSDETHKQDGGDT 136 (323)
T ss_pred ------ceEEEEEccCcceEEEeeeeccc-------------cccccceecc-CCCcchhheecCCcccchhhhhccCcc
Confidence 89999998765432 2222211 1111123333 222 12221111 1222222111
Q ss_pred e--ec--ccccccccCeeeEEECCC-CCeEEEEeecCCCCCCCeEEEEEecCCccce----------eeeeeeeecceeE
Q 005140 351 T--LI--DKKSLKVENVMDFSWSPT-DPIISLFVPELGGGNQPARVSLVQIPSKEEL----------RQKNLFSVSDCKM 415 (712)
Q Consensus 351 ~--~~--~~~~~~~~~v~~~~~sp~-~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~----------~~~~~~~~~~~~~ 415 (712)
. .+ .....+.+.+.+..|..+ +.+++.. .+..++.+.+|++.+...+ ....-+.....++
T Consensus 137 tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lll-----aGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsl 211 (323)
T KOG0322|consen 137 TQVQIADDSERSKLGSVMCQDKDHACGSTFLLL-----AGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSL 211 (323)
T ss_pred ceeEccCchhccccCceeeeeccccccceEEEE-----EeccCCeEEEEEccCCceeeccccccccccchhhccCcceee
Confidence 0 00 011123445777775443 4443331 1334445555655543211 1111122223333
Q ss_pred EECcCCCEEEEEEcccccccccccccEEEEEEecCC--ccee-EEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEE
Q 005140 416 YWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERD--IPIE-VLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISF 492 (712)
Q Consensus 416 ~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~-~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i 492 (712)
.+.+.-..=+.+..+. .+..|.+.... .++. .+++ .+-.|..+.+-||++.+|+++.|+ .+++
T Consensus 212 dyas~~~rGisgga~d---------kl~~~Sl~~s~gslq~~~e~~l--knpGv~gvrIRpD~KIlATAGWD~---RiRV 277 (323)
T KOG0322|consen 212 DYASSCDRGISGGADD---------KLVMYSLNHSTGSLQIRKEITL--KNPGVSGVRIRPDGKILATAGWDH---RIRV 277 (323)
T ss_pred eechhhcCCcCCCccc---------cceeeeeccccCcccccceEEe--cCCCccceEEccCCcEEeecccCC---cEEE
Confidence 3332211111111111 14555555431 1111 1222 255688899999999999999999 9999
Q ss_pred EEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEeccCCCceEEEEEC
Q 005140 493 YSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNV 544 (712)
Q Consensus 493 ~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~ 544 (712)
|+.++.. ++..+. ...+++++|+|+...++.++. |++|.+|++
T Consensus 278 yswrtl~------pLAVLkyHsagvn~vAfspd~~lmAaask---D~rISLWkL 322 (323)
T KOG0322|consen 278 YSWRTLN------PLAVLKYHSAGVNAVAFSPDCELMAAASK---DARISLWKL 322 (323)
T ss_pred EEeccCC------chhhhhhhhcceeEEEeCCCCchhhhccC---CceEEeeec
Confidence 9998766 455444 447999999999999999998 999999986
No 250
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=5.5e-13 Score=119.17 Aligned_cols=76 Identities=26% Similarity=0.349 Sum_probs=66.2
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceE
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~ 139 (712)
++|||+|||+ +...+.|++.|++||+|.+ ..+..|+.||++|||+||+|.+.+.|.+|++..| -.|||| +
T Consensus 13 TKifVggL~w------~T~~~~l~~yFeqfGeI~e--avvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR-~ 82 (247)
T KOG0149|consen 13 TKIFVGGLAW------ETHKETLRRYFEQFGEIVE--AVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGR-K 82 (247)
T ss_pred EEEEEcCccc------ccchHHHHHHHHHhCceEE--EEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Cccccc-c
Confidence 5899999999 4448899999999999999 9999999999999999999999999999999766 346775 5
Q ss_pred EEEEee
Q 005140 140 FAVNMF 145 (712)
Q Consensus 140 l~v~~~ 145 (712)
-.||..
T Consensus 83 aNcnlA 88 (247)
T KOG0149|consen 83 ANCNLA 88 (247)
T ss_pred cccchh
Confidence 555543
No 251
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.37 E-value=1.6e-10 Score=110.43 Aligned_cols=233 Identities=14% Similarity=0.247 Sum_probs=154.1
Q ss_pred eEEecCCCCCEEEEecCCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccce
Q 005140 323 VFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEEL 402 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~ 402 (712)
.+.|.. +...|+.++....++|+................|-.+-||. ..+|+ .+.+.+-++.+++......+
T Consensus 10 ~~~~Nq-d~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvai-----V~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 10 FIGFNQ-DSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAI-----VSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred eeeecc-ceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc--ceeEE-----EecCCCceEEEEEcccCceE
Confidence 456777 88888888866678888876544222111111244555553 45665 33455556666766665555
Q ss_pred eeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEE-ecCCCCceEEEEEeeCCCEEEEE
Q 005140 403 RQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLE-LDNKNDKIIAFAWEPKGHRFAVI 481 (712)
Q Consensus 403 ~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-l~~h~~~v~~~~~sp~g~~l~~~ 481 (712)
.... +......+..+ -+.|++..... +.+|+++.-..- .++. .+.+...+.+++.++.+.++|.-
T Consensus 82 Ce~~-fpt~IL~VrmN--r~RLvV~Lee~----------IyIydI~~MklL-hTI~t~~~n~~gl~AlS~n~~n~ylAyp 147 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMN--RKRLVVCLEES----------IYIYDIKDMKLL-HTIETTPPNPKGLCALSPNNANCYLAYP 147 (391)
T ss_pred EEEe-cCCceEEEEEc--cceEEEEEccc----------EEEEecccceee-hhhhccCCCccceEeeccCCCCceEEec
Confidence 4443 33344433333 34555554432 578888754322 2222 33456667778888788899886
Q ss_pred EcCCCCCeEEEEEeecccccCceeEEEEeCC--CceeEEEEccCCCeEEEEeccCCCce-EEEEECCcceeeeeccc---
Q 005140 482 HGDSPRPDISFYSMRTAQHAGRVSKLTTLKG--KQANALFWSPSGRFIVLAGLKGFNGQ-LEFYNVDELETMATAEH--- 555 (712)
Q Consensus 482 ~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~v~~l~~spdg~~l~~~~~~~~dg~-v~iwd~~~~~~~~~~~~--- 555 (712)
+... ...|.+||..+-. ++..+.. +++.+++|||+|.+||+++. .|+ |++|.+.+|+.+.....
T Consensus 148 ~s~t-~GdV~l~d~~nl~------~v~~I~aH~~~lAalafs~~G~llATASe---KGTVIRVf~v~~G~kl~eFRRG~~ 217 (391)
T KOG2110|consen 148 GSTT-SGDVVLFDTINLQ------PVNTINAHKGPLAALAFSPDGTLLATASE---KGTVIRVFSVPEGQKLYEFRRGTY 217 (391)
T ss_pred CCCC-CceEEEEEcccce------eeeEEEecCCceeEEEECCCCCEEEEecc---CceEEEEEEcCCccEeeeeeCCce
Confidence 5421 1289999986533 5555554 47999999999999999997 665 79999999988876433
Q ss_pred -cceeeEEECCCCCEEEEEEccceeccccEEEEEecCc
Q 005140 556 -FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK 592 (712)
Q Consensus 556 -~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~ 592 (712)
..|.+++|+|++++|++.+. .++|.||.+...
T Consensus 218 ~~~IySL~Fs~ds~~L~~sS~-----TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 218 PVSIYSLSFSPDSQFLAASSN-----TETVHIFKLEKV 250 (391)
T ss_pred eeEEEEEEECCCCCeEEEecC-----CCeEEEEEeccc
Confidence 46789999999999999998 899999998743
No 252
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.37 E-value=1.7e-12 Score=99.92 Aligned_cols=69 Identities=33% Similarity=0.551 Sum_probs=63.3
Q ss_pred EEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEE
Q 005140 62 IVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIF 140 (712)
Q Consensus 62 ~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l 140 (712)
|||+|||. +..+..|+++|++||.|.. +.++.+ .+++++|||||+|.+.++|.+|++.+||+.+.++ .+
T Consensus 1 l~v~nlp~------~~t~~~l~~~f~~~g~i~~--~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~-~i 69 (70)
T PF00076_consen 1 LYVGNLPP------DVTEEELRDFFSQFGKIES--IKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGR-KI 69 (70)
T ss_dssp EEEESETT------TSSHHHHHHHHHTTSTEEE--EEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE-EE
T ss_pred cEEcCCCC------cCCHHHHHHHHHHhhhccc--cccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECcc-Cc
Confidence 79999997 5559999999999999999 999998 4899999999999999999999999999999874 44
No 253
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=5.1e-11 Score=112.57 Aligned_cols=268 Identities=15% Similarity=0.232 Sum_probs=165.6
Q ss_pred cEEEEEecCc-eEEeecccCcceeeeec-CC-CeeEEEecC--CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeee
Q 005140 226 TYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSP--GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRD 300 (712)
Q Consensus 226 ~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~~Sp--dg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~ 300 (712)
+.+|++..+| |+|||.. +++.+..|. ++ .+..+.|.. ...-+.+++.| |+|++||+++......
T Consensus 41 ~~vav~lSngsv~lyd~~-tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssD----------G~Vr~wD~Rs~~e~a~ 109 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKG-TGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSD----------GTVRLWDIRSQAESAR 109 (376)
T ss_pred eeEEEEecCCeEEEEecc-chhhhheecCCCCcccceEEecCCCCCeeEEeccC----------CeEEEEEeecchhhhh
Confidence 5678877777 8999999 777777764 33 377888877 45678899999 9999999987765444
Q ss_pred c--cCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-----CCeEEEEEcCCcee-cccc-cccccCeeeEEECCC
Q 005140 301 F--KGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-----KNMISVYETESFTL-IDKK-SLKVENVMDFSWSPT 371 (712)
Q Consensus 301 ~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-----d~~i~iwd~~~~~~-~~~~-~~~~~~v~~~~~sp~ 371 (712)
+ .++.... +.++.-.. .++.++++. +-.+.+||++..+. +... ..|.+.|+++.|+|.
T Consensus 110 ~~~~~~~~~~------------f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~ 176 (376)
T KOG1188|consen 110 ISWTQQSGTP------------FICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS 176 (376)
T ss_pred eeccCCCCCc------------ceEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC
Confidence 3 3333111 21455554 667888776 56799999986654 4333 247788999999998
Q ss_pred CC-eEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecC
Q 005140 372 DP-IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKER 450 (712)
Q Consensus 372 ~~-~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 450 (712)
+. .|++ |+.|+-+.|+....+... .
T Consensus 177 ~pnlLlS-----GSvDGLvnlfD~~~d~Ee---------------------D---------------------------- 202 (376)
T KOG1188|consen 177 DPNLLLS-----GSVDGLVNLFDTKKDNEE---------------------D---------------------------- 202 (376)
T ss_pred CCCeEEe-----ecccceEEeeecCCCcch---------------------h----------------------------
Confidence 65 4555 666665554332221100 0
Q ss_pred CcceeEEEecCCCCceEEEEEeeCC-CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCce---------eE---
Q 005140 451 DIPIEVLELDNKNDKIIAFAWEPKG-HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQA---------NA--- 517 (712)
Q Consensus 451 ~~~~~~~~l~~h~~~v~~~~~sp~g-~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v---------~~--- 517 (712)
..+..-+|...|..+.|..++ ++|.+.+... +..+|+++.+... ..+....+ ++
T Consensus 203 ----aL~~viN~~sSI~~igw~~~~ykrI~clTH~E---tf~~~ele~~~~~------~~~~~~~~~~~d~r~~~~~dY~ 269 (376)
T KOG1188|consen 203 ----ALLHVINHGSSIHLIGWLSKKYKRIMCLTHME---TFAIYELEDGSEE------TWLENPDVSADDLRKEDNCDYV 269 (376)
T ss_pred ----hHHHhhcccceeeeeeeecCCcceEEEEEccC---ceeEEEccCCChh------hcccCccchhhhHHhhhhhhhe
Confidence 001122456779999999877 3455555555 6999999776521 11111100 00
Q ss_pred E-EEcc-CCCeEEEEeccCCCceEEEEE-CCcceeee------eccccceeeEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 518 L-FWSP-SGRFIVLAGLKGFNGQLEFYN-VDELETMA------TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 518 l-~~sp-dg~~l~~~~~~~~dg~v~iwd-~~~~~~~~------~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
+ ..+| ++..+++++.....+.+.... ..++.... .+|..-|.++.|...+..+.||+. ||.+.+|.
T Consensus 270 I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGE-----DG~l~~Wk 344 (376)
T KOG1188|consen 270 INEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGE-----DGLLQAWK 344 (376)
T ss_pred eecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCC-----CceEEEEe
Confidence 1 1233 344555554311123333332 23332221 234567889999999999999999 99999998
Q ss_pred e
Q 005140 589 F 589 (712)
Q Consensus 589 ~ 589 (712)
.
T Consensus 345 ~ 345 (376)
T KOG1188|consen 345 V 345 (376)
T ss_pred c
Confidence 6
No 254
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.36 E-value=3e-10 Score=120.19 Aligned_cols=261 Identities=11% Similarity=0.130 Sum_probs=165.7
Q ss_pred cEEEEEEccCC-ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCcee--cccc----
Q 005140 285 VVINIFDVRTG-KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTL--IDKK---- 356 (712)
Q Consensus 285 ~~I~iwd~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~--~~~~---- 356 (712)
+.+.||++... .+-..+....... ++.|+|-+..++|.|. +|.|.+||+..+.. ....
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~--------------~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~ 287 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVT--------------CLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALE 287 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCcee--------------EEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccccc
Confidence 36889998765 4445555444433 7899983344555555 99999999986654 2211
Q ss_pred cccccCeeeEEECCCCC--eEEEEeecCCCCCCCeEEEEEecCCc---cceeeee-------eeeecceeEEECcCC-CE
Q 005140 357 SLKVENVMDFSWSPTDP--IISLFVPELGGGNQPARVSLVQIPSK---EELRQKN-------LFSVSDCKMYWQSSG-DY 423 (712)
Q Consensus 357 ~~~~~~v~~~~~sp~~~--~la~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~-------~~~~~~~~~~~s~~g-~~ 423 (712)
..|...+..+.|-.+-. -+++ ++.|+.+..|..+.-.. ..+.... -.......+.|.+.. ..
T Consensus 288 ~sh~~~v~~vvW~~~~~~~~f~s-----~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~ 362 (555)
T KOG1587|consen 288 VSHSEPVTAVVWLQNEHNTEFFS-----LSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNH 362 (555)
T ss_pred ccCCcCeEEEEEeccCCCCceEE-----EecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCce
Confidence 23555688888876533 3555 55788888776554322 1111111 122334456666644 45
Q ss_pred EEEEEcccccccccccccEEEEEEecCCccee-------EEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEee
Q 005140 424 LAVKVDRYTKTKKSTYTGFELFRIKERDIPIE-------VLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMR 496 (712)
Q Consensus 424 l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-------~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~ 496 (712)
+++++..+. ++.....+.... ......|.++|.++.++|=+..+...++|- +|+||...
T Consensus 363 FiVGTe~G~-----------v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW---~vriWs~~ 428 (555)
T KOG1587|consen 363 FIVGTEEGK-----------VYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDW---TVRIWSED 428 (555)
T ss_pred EEEEcCCcE-----------EEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccc---eeEecccc
Confidence 666776654 333222111111 123447899999999999888777777788 89999975
Q ss_pred cccccCceeEEEEeCCC--ceeEEEEccCCCeEEE-EeccCCCceEEEEECCcce--eeee--ccccceeeEEECCCCCE
Q 005140 497 TAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVL-AGLKGFNGQLEFYNVDELE--TMAT--AEHFMATDVEWDPTGRY 569 (712)
Q Consensus 497 ~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~-~~~~~~dg~v~iwd~~~~~--~~~~--~~~~~v~~~~~spdg~~ 569 (712)
.... ++..+..+ .+++++|||--.-+++ +.. +|.|.|||+.... .+.+ .+....+.+.|+++|+.
T Consensus 429 ~~~~-----Pl~~~~~~~~~v~~vaWSptrpavF~~~d~---~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~ 500 (555)
T KOG1587|consen 429 VIAS-----PLLSLDSSPDYVTDVAWSPTRPAVFATVDG---DGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKL 500 (555)
T ss_pred CCCC-----cchhhhhccceeeeeEEcCcCceEEEEEcC---CCceehhhhhccccCCcccccccccccceeecCCCCcE
Confidence 3222 44444432 5899999997655444 444 8999999997322 2222 23456678999999999
Q ss_pred EEEEEccceeccccEEEEEecC
Q 005140 570 VATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 570 l~t~s~~~~~~d~~v~iw~~~g 591 (712)
|++|.. .|.+.+|++..
T Consensus 501 lavGd~-----~G~~~~~~l~~ 517 (555)
T KOG1587|consen 501 LAVGDA-----NGTTHILKLSE 517 (555)
T ss_pred EEEecC-----CCcEEEEEcCc
Confidence 999999 89999999863
No 255
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.36 E-value=3.5e-11 Score=112.64 Aligned_cols=226 Identities=13% Similarity=0.169 Sum_probs=160.4
Q ss_pred ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCC-ccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccc
Q 005140 360 VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS-KEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKST 438 (712)
Q Consensus 360 ~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~ 438 (712)
...|++.+|++|...+|+ +-.+..+.|+...... .+.....+.+......+.|+|.++.|++++.+..
T Consensus 10 ~~pitchAwn~drt~iAv-----~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drn------ 78 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAV-----SPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRN------ 78 (361)
T ss_pred cCceeeeeecCCCceEEe-----ccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCC------
Confidence 456999999999999998 5556666666665555 4455555666666667899999999999888765
Q ss_pred cccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEE
Q 005140 439 YTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANAL 518 (712)
Q Consensus 439 ~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l 518 (712)
-.+|.....+.=...+.+..++..++++.|+|.++.||++++.. .|.+|-++..+.=--.+.++.-....|+++
T Consensus 79 ---ayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar---~isVcy~E~ENdWWVsKhikkPirStv~sl 152 (361)
T KOG1523|consen 79 ---AYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGAR---LISVCYYEQENDWWVSKHIKKPIRSTVTSL 152 (361)
T ss_pred ---ccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCcc---EEEEEEEecccceehhhhhCCccccceeee
Confidence 46777654443334445556699999999999999999999877 888888754332100011222113358999
Q ss_pred EEccCCCeEEEEeccCCCceEEEEECC-----c-------------ceeeee--ccccceeeEEECCCCCEEEEEEccce
Q 005140 519 FWSPSGRFIVLAGLKGFNGQLEFYNVD-----E-------------LETMAT--AEHFMATDVEWDPTGRYVATAVTSVH 578 (712)
Q Consensus 519 ~~spdg~~l~~~~~~~~dg~v~iwd~~-----~-------------~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~ 578 (712)
.|+|++-.|+.|+. |+..++|..- . |+++.. ...+.+..+.|+|+|..|+..+.
T Consensus 153 dWhpnnVLlaaGs~---D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H--- 226 (361)
T KOG1523|consen 153 DWHPNNVLLAAGST---DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH--- 226 (361)
T ss_pred eccCCcceeccccc---CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC---
Confidence 99999999999998 9999998642 1 333333 34477889999999999999999
Q ss_pred eccccEEEEEecCce--eeee--cccceeeeEEecC
Q 005140 579 EMENGFNIWSFNGKL--LYRT--LKDHFFQFLWRPR 610 (712)
Q Consensus 579 ~~d~~v~iw~~~g~~--~~~~--~~~~i~~~~w~p~ 610 (712)
|..+.+-|..+.. +... ..-+..++.|-..
T Consensus 227 --ds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 227 --DSTVSFVDAAGPSERVQSVATAQLPLLSVSWISE 260 (361)
T ss_pred --CCceEEeecCCCchhccchhhccCCceeeEeecC
Confidence 9999999987653 2221 1234556666443
No 256
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.36 E-value=2.3e-12 Score=134.29 Aligned_cols=82 Identities=27% Similarity=0.438 Sum_probs=73.8
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
+.+.+|||+|||. +..++.|+++|++||.|.+ +.|+.|+.||.+||||||+|.+.++|.+|+..|||+.+++
T Consensus 267 ~~~~~lfV~NL~~------~~~e~~L~~~F~~fG~v~~--v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~g 338 (352)
T TIGR01661 267 GAGYCIFVYNLSP------DTDETVLWQLFGPFGAVQN--VKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGN 338 (352)
T ss_pred CCCcEEEEeCCCC------CCCHHHHHHHHHhCCCeEE--EEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3456899999997 4459999999999999999 9999999999999999999999999999999999999998
Q ss_pred ceEEEEEeecc
Q 005140 137 AHIFAVNMFDD 147 (712)
Q Consensus 137 ~~~l~v~~~~~ 147 (712)
+ .+.|.....
T Consensus 339 r-~i~V~~~~~ 348 (352)
T TIGR01661 339 R-VLQVSFKTN 348 (352)
T ss_pred e-EEEEEEccC
Confidence 6 888876543
No 257
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.35 E-value=2.9e-12 Score=125.37 Aligned_cols=251 Identities=13% Similarity=0.208 Sum_probs=176.4
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCE
Q 005140 254 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 333 (712)
Q Consensus 254 ~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ 333 (712)
-+...+.++.+|++|+.|+.. |.|-.+|..++++...+....... .+.|-. +.++
T Consensus 130 FGPY~~~ytrnGrhlllgGrK----------GHlAa~Dw~t~~L~~Ei~v~Etv~--------------Dv~~LH-neq~ 184 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRK----------GHLAAFDWVTKKLHFEINVMETVR--------------DVTFLH-NEQF 184 (545)
T ss_pred cCCeeeeecCCccEEEecCCc----------cceeeeecccceeeeeeehhhhhh--------------hhhhhc-chHH
Confidence 357889999999999999999 999999999999888876654433 578888 9999
Q ss_pred EEEecCCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecce
Q 005140 334 FAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDC 413 (712)
Q Consensus 334 la~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 413 (712)
||.+..+.+.|||-..-++- .. -....|..+.|-|---.|+. ++. .+.+.-.|+..++.+..
T Consensus 185 ~AVAQK~y~yvYD~~GtElH-Cl-k~~~~v~rLeFLPyHfLL~~-----~~~--~G~L~Y~DVS~GklVa~--------- 246 (545)
T KOG1272|consen 185 FAVAQKKYVYVYDNNGTELH-CL-KRHIRVARLEFLPYHFLLVA-----ASE--AGFLKYQDVSTGKLVAS--------- 246 (545)
T ss_pred HHhhhhceEEEecCCCcEEe-eh-hhcCchhhhcccchhheeee-----ccc--CCceEEEeechhhhhHH---------
Confidence 99999999999997643332 22 22345888899997666665 333 33332333322221111
Q ss_pred eEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEE
Q 005140 414 KMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFY 493 (712)
Q Consensus 414 ~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~ 493 (712)
+....+.+..++-+|-...+.+|...| +|.+|
T Consensus 247 ---------------------------------------------~~t~~G~~~vm~qNP~NaVih~GhsnG---tVSlW 278 (545)
T KOG1272|consen 247 ---------------------------------------------IRTGAGRTDVMKQNPYNAVIHLGHSNG---TVSLW 278 (545)
T ss_pred ---------------------------------------------HHccCCccchhhcCCccceEEEcCCCc---eEEec
Confidence 111256666777888888888888888 99999
Q ss_pred EeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccc-cceeeEEECCCCCEE
Q 005140 494 SMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEH-FMATDVEWDPTGRYV 570 (712)
Q Consensus 494 d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~-~~v~~~~~spdg~~l 570 (712)
...... ++..+- .++|+++++.++|+|+++++. |..++|||++....+.+.+. .....+++|..|- |
T Consensus 279 SP~ske------PLvKiLcH~g~V~siAv~~~G~YMaTtG~---Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkgl-L 348 (545)
T KOG1272|consen 279 SPNSKE------PLVKILCHRGPVSSIAVDRGGRYMATTGL---DRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGL-L 348 (545)
T ss_pred CCCCcc------hHHHHHhcCCCcceEEECCCCcEEeeccc---ccceeEeeeccccccceeecCCCccccccccccc-e
Confidence 986544 333332 347999999999999999998 99999999998887776544 6677899998774 3
Q ss_pred EEEEccceeccccEEEEE--ecCc----eeeeec--ccceeeeEEecCC
Q 005140 571 ATAVTSVHEMENGFNIWS--FNGK----LLYRTL--KDHFFQFLWRPRP 611 (712)
Q Consensus 571 ~t~s~~~~~~d~~v~iw~--~~g~----~~~~~~--~~~i~~~~w~p~~ 611 (712)
|.+. ...+.||. +.+. ..+-.| .+.|..+.|.|-.
T Consensus 349 A~~~------G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~E 391 (545)
T KOG1272|consen 349 ALSY------GDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYE 391 (545)
T ss_pred eeec------CCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHH
Confidence 3333 35899995 2222 222122 2577788888853
No 258
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=3.7e-10 Score=118.58 Aligned_cols=226 Identities=11% Similarity=0.034 Sum_probs=134.4
Q ss_pred eEEeecccCcceeeeecCCCeeEEEecCCCCE-EEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCC
Q 005140 236 AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKY-LVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTG 314 (712)
Q Consensus 236 i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~-l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~ 314 (712)
+.+-|.++...+..... .......|||||+. ++..+... ....|.++|+.+|+............
T Consensus 171 l~~~d~dg~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~-------~~~~Iyv~dl~tg~~~~lt~~~g~~~------ 236 (419)
T PRK04043 171 IVLADYTLTYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGE-------RKPTLYKYNLYTGKKEKIASSQGMLV------ 236 (419)
T ss_pred EEEECCCCCceeEEccC-CCeEeEEECCCCCcEEEEEEccC-------CCCEEEEEECCCCcEEEEecCCCcEE------
Confidence 44556663333333333 25778999999986 55444331 11479999998887544333222121
Q ss_pred CcCCCCcCeEEecCCCCCEEEEec----CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeE
Q 005140 315 GVAGVSWPVFRWGGGKDKYFAKLG----KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPAR 390 (712)
Q Consensus 315 ~~~~~~~~~~~~s~~dg~~la~~~----d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~ 390 (712)
...||| ||+.++... +..|.++++.++.... ............|+|||+.|++... ..+...
T Consensus 237 --------~~~~SP-DG~~la~~~~~~g~~~Iy~~dl~~g~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sd----r~g~~~ 302 (419)
T PRK04043 237 --------VSDVSK-DGSKLLLTMAPKGQPDIYLYDTNTKTLTQ-ITNYPGIDVNGNFVEDDKRIVFVSD----RLGYPN 302 (419)
T ss_pred --------eeEECC-CCCEEEEEEccCCCcEEEEEECCCCcEEE-cccCCCccCccEECCCCCEEEEEEC----CCCCce
Confidence 468999 998777554 4568888887665332 1111112345689999999988432 345568
Q ss_pred EEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEE
Q 005140 391 VSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFA 470 (712)
Q Consensus 391 i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~ 470 (712)
|+.+++......+.. .... ....|+|+|++|++........ ...+...||.++..+.....++. ........
T Consensus 303 Iy~~dl~~g~~~rlt-~~g~--~~~~~SPDG~~Ia~~~~~~~~~--~~~~~~~I~v~d~~~g~~~~LT~---~~~~~~p~ 374 (419)
T PRK04043 303 IFMKKLNSGSVEQVV-FHGK--NNSSVSTYKNYIVYSSRETNNE--FGKNTFNLYLISTNSDYIRRLTA---NGVNQFPR 374 (419)
T ss_pred EEEEECCCCCeEeCc-cCCC--cCceECCCCCEEEEEEcCCCcc--cCCCCcEEEEEECCCCCeEECCC---CCCcCCeE
Confidence 888888765432211 1111 1247999999999877643210 00012456666544444333332 23344689
Q ss_pred EeeCCCEEEEEEcCCCCCeEEEEEeec
Q 005140 471 WEPKGHRFAVIHGDSPRPDISFYSMRT 497 (712)
Q Consensus 471 ~sp~g~~l~~~~~d~~~~~v~i~d~~~ 497 (712)
|+|||+.+++....+....+.+++++.
T Consensus 375 ~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 375 FSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred ECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 999999999988766544577777743
No 259
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.34 E-value=1.3e-10 Score=108.82 Aligned_cols=230 Identities=13% Similarity=0.169 Sum_probs=156.7
Q ss_pred eEEecCCCCCEEEEec-CCeEEEEEcCCce---ecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEE-ecC
Q 005140 323 VFRWGGGKDKYFAKLG-KNMISVYETESFT---LIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLV-QIP 397 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~-d~~i~iwd~~~~~---~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~-~~~ 397 (712)
+.+|++ |...+|.+. ++.|.||...... ..+..+.|...|++++|+|..+.|++ ++.|....||.. +-.
T Consensus 15 chAwn~-drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvt-----cs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 15 CHAWNS-DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVT-----CSHDRNAYVWTQPSGG 88 (361)
T ss_pred eeeecC-CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeE-----ccCCCCccccccCCCC
Confidence 789999 999999888 7799999987554 44455667778999999999999999 888888887766 333
Q ss_pred CccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCC-cceeEEEecCCCCceEEEEEeeCCC
Q 005140 398 SKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERD-IPIEVLELDNKNDKIIAFAWEPKGH 476 (712)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~l~~h~~~v~~~~~sp~g~ 476 (712)
..++.....-++.....+.|+|.++.+++++.... +.++.+.... -=+....-..+...|.+++|+|++-
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~---------isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV 159 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARL---------ISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV 159 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccE---------EEEEEEecccceehhhhhCCccccceeeeeccCCcc
Confidence 33333333334555667899999999999988766 3333332211 0000001113478899999999999
Q ss_pred EEEEEEcCCCCCeEEEEEee-----cccccCc------e-eEEEE--eCCCceeEEEEccCCCeEEEEeccCCCceEEEE
Q 005140 477 RFAVIHGDSPRPDISFYSMR-----TAQHAGR------V-SKLTT--LKGKQANALFWSPSGRFIVLAGLKGFNGQLEFY 542 (712)
Q Consensus 477 ~l~~~~~d~~~~~v~i~d~~-----~~~~~~~------~-~~~~~--~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iw 542 (712)
.+++++.|+ ..++|..- ....... + .++.. ..++.+..+.|+|+|..|+..+. |+.+.+-
T Consensus 160 LlaaGs~D~---k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H---ds~v~~~ 233 (361)
T KOG1523|consen 160 LLAAGSTDG---KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH---DSTVSFV 233 (361)
T ss_pred eecccccCc---ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC---CCceEEe
Confidence 999999998 78888642 1110000 0 01112 23456889999999999999998 9999999
Q ss_pred ECCcce-eeee--ccccceeeEEECCCCCEEEEE
Q 005140 543 NVDELE-TMAT--AEHFMATDVEWDPTGRYVATA 573 (712)
Q Consensus 543 d~~~~~-~~~~--~~~~~v~~~~~spdg~~l~t~ 573 (712)
|..... .+.+ ...-+..++.|-.+...++.+
T Consensus 234 da~~p~~~v~~~~~~~lP~ls~~~ise~~vv~ag 267 (361)
T KOG1523|consen 234 DAAGPSERVQSVATAQLPLLSVSWISENSVVAAG 267 (361)
T ss_pred ecCCCchhccchhhccCCceeeEeecCCceeecC
Confidence 987553 2222 223666778887765544443
No 260
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.33 E-value=2.8e-09 Score=105.09 Aligned_cols=181 Identities=16% Similarity=0.168 Sum_probs=129.1
Q ss_pred EcC-CCcEEEEEecCceEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCcc-EEEEEEccCCcee
Q 005140 221 WSP-LGTYLATVHRQGAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRV-VINIFDVRTGKVM 298 (712)
Q Consensus 221 ~Sp-dg~~lat~~~~~i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~-~I~iwd~~~g~~~ 298 (712)
|++ +|.++|+.+.....|.+.. .+-.+..-+..+|....++-+++-++.|..| | .+-|+|..+++..
T Consensus 327 fa~~~Gd~ia~VSRGkaFi~~~~-~~~~iqv~~~~~VrY~r~~~~~e~~vigt~d----------gD~l~iyd~~~~e~k 395 (668)
T COG4946 327 FAVVNGDYIALVSRGKAFIMRPW-DGYSIQVGKKGGVRYRRIQVDPEGDVIGTND----------GDKLGIYDKDGGEVK 395 (668)
T ss_pred hccCCCcEEEEEecCcEEEECCC-CCeeEEcCCCCceEEEEEccCCcceEEeccC----------CceEEEEecCCceEE
Confidence 664 7999999999887666655 3333333344459999999998888888888 5 7999998777644
Q ss_pred eeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEE
Q 005140 299 RDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISL 377 (712)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~ 377 (712)
+ +...-+.+- ++..++ +|++++.+. ...|.++|+++++..-.-....+-|..+.|||++++||+
T Consensus 396 r-~e~~lg~I~-------------av~vs~-dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAY 460 (668)
T COG4946 396 R-IEKDLGNIE-------------AVKVSP-DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAY 460 (668)
T ss_pred E-eeCCccceE-------------EEEEcC-CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEE
Confidence 4 444433331 689999 999999888 788999999988754332234445999999999999999
Q ss_pred EeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccc
Q 005140 378 FVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRY 431 (712)
Q Consensus 378 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~ 431 (712)
..|+ +--...|.++++...+.....+ ....+.+.+|.|+|++|.+.+.+.
T Consensus 461 afP~---gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs~Rs 510 (668)
T COG4946 461 AFPE---GYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLSARS 510 (668)
T ss_pred ecCc---ceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEeccc
Confidence 6653 2333456677777666544333 334455668999999998877654
No 261
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.33 E-value=1.6e-12 Score=113.13 Aligned_cols=76 Identities=26% Similarity=0.494 Sum_probs=68.8
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceE
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~ 139 (712)
..|-|+||-.- ..-+.|+.+|++||.|-+ |+||.|+.|+.++|||||.|....+|+.|++.|+|..||++ -
T Consensus 14 ~SLkVdNLTyR------Tspd~LrrvFekYG~vgD--VyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgR-e 84 (256)
T KOG4207|consen 14 TSLKVDNLTYR------TSPDDLRRVFEKYGRVGD--VYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGR-E 84 (256)
T ss_pred eeEEecceecc------CCHHHHHHHHHHhCcccc--eecccccccccccceeEEEeeecchHHHHHHhhcceeeccc-e
Confidence 37899999973 337889999999999999 99999999999999999999999999999999999999996 6
Q ss_pred EEEEe
Q 005140 140 FAVNM 144 (712)
Q Consensus 140 l~v~~ 144 (712)
|.|..
T Consensus 85 lrVq~ 89 (256)
T KOG4207|consen 85 LRVQM 89 (256)
T ss_pred eeehh
Confidence 66654
No 262
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.30 E-value=8.3e-12 Score=125.96 Aligned_cols=80 Identities=21% Similarity=0.413 Sum_probs=72.4
Q ss_pred cCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 005140 56 SGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135 (712)
Q Consensus 56 ~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 135 (712)
..-+++|||.|||. +..+++|+++|++||.|++ |.|+.|+.|+++||||||+|.++++|++|++.|||..+.
T Consensus 104 ~~~~~~LfVgnLp~------~~te~~L~~lF~~~G~V~~--v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~ 175 (346)
T TIGR01659 104 NNSGTNLIVNYLPQ------DMTDRELYALFRTIGPINT--CRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVR 175 (346)
T ss_pred CCCCcEEEEeCCCC------CCCHHHHHHHHHhcCCEEE--EEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccC
Confidence 33578999999997 5669999999999999999 999999999999999999999999999999999999998
Q ss_pred CceEEEEEe
Q 005140 136 RAHIFAVNM 144 (712)
Q Consensus 136 ~~~~l~v~~ 144 (712)
++ .++|..
T Consensus 176 gr-~i~V~~ 183 (346)
T TIGR01659 176 NK-RLKVSY 183 (346)
T ss_pred Cc-eeeeec
Confidence 75 666654
No 263
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=1e-10 Score=117.60 Aligned_cols=255 Identities=16% Similarity=0.253 Sum_probs=163.4
Q ss_pred eEEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCe-------EEEE
Q 005140 323 VFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPA-------RVSL 393 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~-------~i~~ 393 (712)
.+..|| ||+|+.+.+ .-.|++||+....+-....+....|.-.-++.|-..+++.. .|..+ +-+.
T Consensus 56 ~ik~s~-DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~-----~DR~IefHak~G~hy~ 129 (703)
T KOG2321|consen 56 RIKVSP-DGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQ-----NDRTIEFHAKYGRHYR 129 (703)
T ss_pred eeEecC-CCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEee-----cCceeeehhhcCeeee
Confidence 689999 999987777 88999999987665433333334454444454434344321 22221 1111
Q ss_pred EecCCccceeeeeeeeecceeEEEC-cCCCEEEEEEcccccccccccccEEEEEEecCC-cceeEEEecCCCCceEEEEE
Q 005140 394 VQIPSKEELRQKNLFSVSDCKMYWQ-SSGDYLAVKVDRYTKTKKSTYTGFELFRIKERD-IPIEVLELDNKNDKIIAFAW 471 (712)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~s-~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~l~~h~~~v~~~~~ 471 (712)
..+|.. ...|.++ |+...+++++. ..+|++.... .-...+.. ..+.++++..
T Consensus 130 ~RIP~~------------GRDm~y~~~scDly~~gsg------------~evYRlNLEqGrfL~P~~~--~~~~lN~v~i 183 (703)
T KOG2321|consen 130 TRIPKF------------GRDMKYHKPSCDLYLVGSG------------SEVYRLNLEQGRFLNPFET--DSGELNVVSI 183 (703)
T ss_pred eecCcC------------CccccccCCCccEEEeecC------------cceEEEEcccccccccccc--ccccceeeee
Confidence 112111 1112222 33444444444 3678777533 22222333 2478999999
Q ss_pred eeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC-------ceeEEEEccCCCeEEEEeccCCCceEEEEEC
Q 005140 472 EPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK-------QANALFWSPSGRFIVLAGLKGFNGQLEFYNV 544 (712)
Q Consensus 472 sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-------~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~ 544 (712)
++....|++|+.+| .|.+||.+.......+....++..+ .|+++.|+.+|-.+++|.. .|.+.|||+
T Consensus 184 n~~hgLla~Gt~~g---~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts---~G~v~iyDL 257 (703)
T KOG2321|consen 184 NEEHGLLACGTEDG---VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS---TGSVLIYDL 257 (703)
T ss_pred cCccceEEecccCc---eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc---CCcEEEEEc
Confidence 99999999999899 9999999876543222222222211 3899999999999999998 999999999
Q ss_pred Ccceeeee-ccc--cceeeEEECCC--CCEEEEEEccceeccccEEEEEec-Cceeeee-cccceeeeEEecCCCCCCCh
Q 005140 545 DELETMAT-AEH--FMATDVEWDPT--GRYVATAVTSVHEMENGFNIWSFN-GKLLYRT-LKDHFFQFLWRPRPPSFLTP 617 (712)
Q Consensus 545 ~~~~~~~~-~~~--~~v~~~~~spd--g~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~-~~~~i~~~~w~p~~~~l~s~ 617 (712)
+..+.+.. .|. .+|..+.|-+. +..|++... ..++||+-. |..+... +...+..+++-|++-.++++
T Consensus 258 Ra~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk------~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~A 331 (703)
T KOG2321|consen 258 RASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDK------RILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTA 331 (703)
T ss_pred ccCCceeecccCCccceeeecccccCCCceEEecch------HHhhhcccccCCceeeccccCCcCceeeecCCceEEEe
Confidence 98776654 333 67889999876 345555554 789999965 6655544 44668899999988777766
Q ss_pred hhHH
Q 005140 618 EKEE 621 (712)
Q Consensus 618 ~~d~ 621 (712)
-+..
T Consensus 332 ne~~ 335 (703)
T KOG2321|consen 332 NESS 335 (703)
T ss_pred cCCC
Confidence 5443
No 264
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.29 E-value=1.3e-08 Score=102.25 Aligned_cols=267 Identities=12% Similarity=0.094 Sum_probs=162.0
Q ss_pred cEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-----------CCeEEEEEcCCceec
Q 005140 285 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-----------KNMISVYETESFTLI 353 (712)
Q Consensus 285 ~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-----------d~~i~iwd~~~~~~~ 353 (712)
++|.+.|..+++.+..+....... ...|| |++.|+.+. +..|.+||+.+++.+
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~---------------~~~sp-Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~ 90 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN---------------PVVAS-DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI 90 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc---------------eeECC-CCCEEEEEeccccccccCCCCCEEEEEECccCcEE
Confidence 579999999999988887665443 34899 998665443 588999999999887
Q ss_pred cccccc-------ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecc-------eeEEECc
Q 005140 354 DKKSLK-------VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSD-------CKMYWQS 419 (712)
Q Consensus 354 ~~~~~~-------~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-------~~~~~s~ 419 (712)
...... ......+++||||++|.+ ...+....|.++|+.+++.+.......... ..+....
T Consensus 91 ~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V-----~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~ 165 (352)
T TIGR02658 91 ADIELPEGPRFLVGTYPWMTSLTPDNKTLLF-----YQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCR 165 (352)
T ss_pred eEEccCCCchhhccCccceEEECCCCCEEEE-----ecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEee
Confidence 655432 122458999999999987 334446788899999988776655321100 0011123
Q ss_pred CCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee-CCCEEEEEEcCCCCCeEEEEEeecc
Q 005140 420 SGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHRFAVIHGDSPRPDISFYSMRTA 498 (712)
Q Consensus 420 ~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~~~~~d~~~~~v~i~d~~~~ 498 (712)
||..+.+..++..+ .......+++-.. . .+ ...+ .+++ +|+++.+... | +|++.|+...
T Consensus 166 Dg~~~~v~~d~~g~---~~~~~~~vf~~~~--~-----~v--~~rP----~~~~~dg~~~~vs~e-G---~V~~id~~~~ 225 (352)
T TIGR02658 166 DGSLAKVGYGTKGN---PKIKPTEVFHPED--E-----YL--INHP----AYSNKSGRLVWPTYT-G---KIFQIDLSSG 225 (352)
T ss_pred cCceEEEEecCCCc---eEEeeeeeecCCc--c-----cc--ccCC----ceEcCCCcEEEEecC-C---eEEEEecCCC
Confidence 33333222222110 0000011111000 0 00 0111 4456 7777666655 7 8999996442
Q ss_pred cccCceeEEEEeC---------CCceeEEEEccCCCeEEEEeccC-------CCceEEEEECCcceeeeecc-ccceeeE
Q 005140 499 QHAGRVSKLTTLK---------GKQANALFWSPSGRFIVLAGLKG-------FNGQLEFYNVDELETMATAE-HFMATDV 561 (712)
Q Consensus 499 ~~~~~~~~~~~~~---------~~~v~~l~~spdg~~l~~~~~~~-------~dg~v~iwd~~~~~~~~~~~-~~~v~~~ 561 (712)
... ....+..+. ......++++|+|+.++++..+. ..+.|.++|..+++.+.... ...+..+
T Consensus 226 ~~~-~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~i 304 (352)
T TIGR02658 226 DAK-FLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSI 304 (352)
T ss_pred cce-ecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeE
Confidence 211 011222221 11123499999999998854321 13689999999999988744 3578899
Q ss_pred EECCCCC-EEEEEEccceeccccEEEEEec-Cceeeee
Q 005140 562 EWDPTGR-YVATAVTSVHEMENGFNIWSFN-GKLLYRT 597 (712)
Q Consensus 562 ~~spdg~-~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~ 597 (712)
++||||+ +|++.... ++.|.+.|.. ++.+...
T Consensus 305 avS~Dgkp~lyvtn~~----s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 305 NVSQDAKPLLYALSTG----DKTLYIFDAETGKELSSV 338 (352)
T ss_pred EECCCCCeEEEEeCCC----CCcEEEEECcCCeEEeee
Confidence 9999999 66655532 6889999986 4455554
No 265
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.28 E-value=8.7e-12 Score=132.45 Aligned_cols=79 Identities=33% Similarity=0.500 Sum_probs=72.9
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
...+.|||+|||. +..++.|+++|++||.|.+ |.|++|+.||++||||||+|.+.++|.+|++.|||..+++
T Consensus 105 ~~~~rLfVGnLp~------~~tEe~Lr~lF~~fG~I~s--V~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~G 176 (612)
T TIGR01645 105 AIMCRVYVGSISF------ELREDTIRRAFDPFGPIKS--INMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGG 176 (612)
T ss_pred cCCCEEEEcCCCC------CCCHHHHHHHHHccCCEEE--EEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEec
Confidence 4678999999997 5559999999999999999 9999999999999999999999999999999999999998
Q ss_pred ceEEEEEe
Q 005140 137 AHIFAVNM 144 (712)
Q Consensus 137 ~~~l~v~~ 144 (712)
+ .++|..
T Consensus 177 R-~IkV~r 183 (612)
T TIGR01645 177 R-NIKVGR 183 (612)
T ss_pred c-eeeecc
Confidence 5 788764
No 266
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=8.3e-12 Score=115.25 Aligned_cols=74 Identities=30% Similarity=0.506 Sum_probs=68.9
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceE
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~ 139 (712)
++|||.-|+. +..|..|++.|++||.|+. |.|+.|..||++||||||+|+++.+...|.+..+|.+|+++.+
T Consensus 102 ~TLFv~RLny------dT~EskLrreF~~YG~Ikr--irlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri 173 (335)
T KOG0113|consen 102 KTLFVARLNY------DTSESKLRREFEKYGPIKR--IRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRI 173 (335)
T ss_pred ceeeeeeccc------cccHHHHHHHHHhcCccee--EEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEE
Confidence 7999999998 5558889999999999999 9999999999999999999999999999999999999999754
Q ss_pred EE
Q 005140 140 FA 141 (712)
Q Consensus 140 l~ 141 (712)
+.
T Consensus 174 ~V 175 (335)
T KOG0113|consen 174 LV 175 (335)
T ss_pred EE
Confidence 44
No 267
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.28 E-value=1.1e-09 Score=119.61 Aligned_cols=158 Identities=10% Similarity=0.062 Sum_probs=106.4
Q ss_pred ecCCCCCCCcccccCCCcccceEEEcCC-CcEEEEEecCc-eEEeecc------cCcceeeeec--CCCeeEEEecCCCC
Q 005140 197 WNDARHLKPEPVYKRSYWTESFVQWSPL-GTYLATVHRQG-AAVWGGA------NTFNRLMRYA--HPQVKLIDFSPGEK 266 (712)
Q Consensus 197 w~~~~~~~~~~~~~~~~~~v~~v~~Spd-g~~lat~~~~~-i~iw~~~------~~~~~~~~~~--~~~v~~i~~Spdg~ 266 (712)
|+. .+..+..+..|...+..++.|+. +.+++||+.|| |++|+.. ++.+...+++ ...+.++.+.+.|.
T Consensus 1034 W~p--~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1034 WNP--RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD 1111 (1431)
T ss_pred CCc--cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC
Confidence 666 57777788899988888888765 59999999999 7899865 1223334444 23499999999999
Q ss_pred EEEEEcCCCCCCCcCCCccEEEEEEccCC--c-----eeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCC-EEEEec
Q 005140 267 YLVTYSSHEPSNPRDANRVVINIFDVRTG--K-----VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK-YFAKLG 338 (712)
Q Consensus 267 ~l~t~s~d~~~~~~~~~~~~I~iwd~~~g--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~-~la~~~ 338 (712)
++|.++.| |.|.+.++.-. . ..+....+.... +.. .-++....+. .++.+.
T Consensus 1112 ~~Av~t~D----------G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~-------vv~----m~a~~~~~~S~~lvy~T 1170 (1431)
T KOG1240|consen 1112 QFAVSTKD----------GSVRVLRIDHYNVSKRVATQVRIPNLKKDGV-------VVS----MHAFTAIVQSHVLVYAT 1170 (1431)
T ss_pred eEEEEcCC----------CeEEEEEccccccccceeeeeecccccCCCc-------eEE----eecccccccceeEEEEE
Confidence 99999999 99999998542 1 122222222211 111 1223221333 566666
Q ss_pred -CCeEEEEEcCCceecccc--cccccCeeeEEECCCCCeEEE
Q 005140 339 -KNMISVYETESFTLIDKK--SLKVENVMDFSWSPTDPIISL 377 (712)
Q Consensus 339 -d~~i~iwd~~~~~~~~~~--~~~~~~v~~~~~sp~~~~la~ 377 (712)
.+.|..||+.....+... ....+-|++++.+|.++.++.
T Consensus 1171 ~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~Wlvi 1212 (1431)
T KOG1240|consen 1171 DLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVI 1212 (1431)
T ss_pred eccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEE
Confidence 788999999866544433 234456899999999888887
No 268
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.28 E-value=1.3e-09 Score=102.30 Aligned_cols=238 Identities=10% Similarity=0.194 Sum_probs=147.7
Q ss_pred eEEecCCCCCEEEEecCCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCC----CCeEEEEEecCC
Q 005140 323 VFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGN----QPARVSLVQIPS 398 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~----~~~~i~~~~~~~ 398 (712)
.++|.. |..-++.+.+...+||+++-.+.......+.+++.-+..---.++|+.. ||+. .+.++.+||-..
T Consensus 10 svs~NQ-D~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLV----GGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 10 SVSFNQ-DHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALV----GGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred EEEEcc-CCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEe----cCCCCCCCCCceEEEEeccc
Confidence 578998 9999999999999999998654433333333332222222234677764 3333 345788888555
Q ss_pred ccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEE
Q 005140 399 KEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRF 478 (712)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l 478 (712)
.+.+.... +...+..+...+ ..|++..... +.+|....+-.....+..........+++-+.+...|
T Consensus 85 ~~~i~el~-f~~~I~~V~l~r--~riVvvl~~~----------I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~L 151 (346)
T KOG2111|consen 85 ERCIIELS-FNSEIKAVKLRR--DRIVVVLENK----------IYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLL 151 (346)
T ss_pred CcEEEEEE-eccceeeEEEcC--CeEEEEecCe----------EEEEEcCCChhheeeeecccCCCceEeecCCCCceEE
Confidence 55554444 233333333333 3444443321 5666665443333333322212223333333233444
Q ss_pred EEEEc-CCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCce-EEEEECCcceeeee----
Q 005140 479 AVIHG-DSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQ-LEFYNVDELETMAT---- 552 (712)
Q Consensus 479 ~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~-v~iwd~~~~~~~~~---- 552 (712)
|+-+. -| .|+|-|+...... ...+-.-+...|.+++.+-+|..+|+++. .|+ |+|||..+++.+..
T Consensus 152 afPg~k~G---qvQi~dL~~~~~~--~p~~I~AH~s~Iacv~Ln~~Gt~vATaSt---kGTLIRIFdt~~g~~l~E~RRG 223 (346)
T KOG2111|consen 152 AFPGFKTG---QVQIVDLASTKPN--APSIINAHDSDIACVALNLQGTLVATAST---KGTLIRIFDTEDGTLLQELRRG 223 (346)
T ss_pred EcCCCccc---eEEEEEhhhcCcC--CceEEEcccCceeEEEEcCCccEEEEecc---CcEEEEEEEcCCCcEeeeeecC
Confidence 44333 34 8999998654321 01222223447999999999999999997 666 79999999988875
Q ss_pred ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 553 AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 553 ~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
..+..+.+++|||++.+||++|. .|++.|+.+..
T Consensus 224 ~d~A~iy~iaFSp~~s~LavsSd-----KgTlHiF~l~~ 257 (346)
T KOG2111|consen 224 VDRADIYCIAFSPNSSWLAVSSD-----KGTLHIFSLRD 257 (346)
T ss_pred CchheEEEEEeCCCccEEEEEcC-----CCeEEEEEeec
Confidence 34468899999999999999999 89999998865
No 269
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.26 E-value=2.3e-11 Score=93.26 Aligned_cols=68 Identities=25% Similarity=0.521 Sum_probs=61.7
Q ss_pred EEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 62 IVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 62 ~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
|+|+|||. ...+++|+++|+.||.|.. +.++.++. |.++|+|||+|.++++|.+|++.++|..+++++
T Consensus 1 v~i~nlp~------~~~~~~l~~~f~~~g~v~~--v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~ 68 (70)
T PF14259_consen 1 VYISNLPP------STTEEDLRNFFSRFGPVEK--VRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRK 68 (70)
T ss_dssp EEEESSTT------T--HHHHHHHCTTSSBEEE--EEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CEEeCCCC------CCCHHHHHHHHHhcCCcce--EEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEE
Confidence 79999997 4458899999999999999 99999986 999999999999999999999999999998863
No 270
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.26 E-value=1.4e-11 Score=128.42 Aligned_cols=77 Identities=31% Similarity=0.512 Sum_probs=71.0
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.++|||+|||. +..+++|+++|++||+|.+ |.|+.|+.+|+++|||||+|.+.++|.+|++.|||..+.++
T Consensus 3 ~~~l~V~nLp~------~~~e~~l~~~F~~~G~i~~--v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~- 73 (352)
T TIGR01661 3 KTNLIVNYLPQ------TMTQEEIRSLFTSIGEIES--CKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNK- 73 (352)
T ss_pred CcEEEEeCCCC------CCCHHHHHHHHHccCCEEE--EEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCe-
Confidence 46999999997 5559999999999999999 99999999999999999999999999999999999999886
Q ss_pred EEEEEe
Q 005140 139 IFAVNM 144 (712)
Q Consensus 139 ~l~v~~ 144 (712)
.+.|..
T Consensus 74 ~i~v~~ 79 (352)
T TIGR01661 74 TIKVSY 79 (352)
T ss_pred eEEEEe
Confidence 777764
No 271
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=1.5e-11 Score=104.49 Aligned_cols=76 Identities=20% Similarity=0.414 Sum_probs=66.8
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
...++|||+||+. .+.+.+|..+|+.||.|.. ++|... +-|||||+|+++.+|+.|+..|||..|.+
T Consensus 8 ~~~~kVYVGnL~~------~a~k~eLE~~F~~yG~lrs--vWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG 74 (195)
T KOG0107|consen 8 NGNTKVYVGNLGS------RATKRELERAFSKYGPLRS--VWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICG 74 (195)
T ss_pred CCCceEEeccCCC------CcchHHHHHHHHhcCccee--EEEeec-----CCCceEEeccCcccHHHHHhhcCCccccC
Confidence 4678999999997 5569999999999999999 999874 56899999999999999999999999998
Q ss_pred ceEEEEEeec
Q 005140 137 AHIFAVNMFD 146 (712)
Q Consensus 137 ~~~l~v~~~~ 146 (712)
. .+.|-+-.
T Consensus 75 ~-r~rVE~S~ 83 (195)
T KOG0107|consen 75 S-RIRVELST 83 (195)
T ss_pred c-eEEEEeec
Confidence 6 66666544
No 272
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=7.3e-10 Score=114.12 Aligned_cols=340 Identities=17% Similarity=0.229 Sum_probs=204.0
Q ss_pred cccceEEEcCCCcEEEEEecCc-eEEeecccCc---c--e---ee------ee-cCC-CeeEEEecCCCCEEEEEcCCCC
Q 005140 214 WTESFVQWSPLGTYLATVHRQG-AAVWGGANTF---N--R---LM------RY-AHP-QVKLIDFSPGEKYLVTYSSHEP 276 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~---~--~---~~------~~-~~~-~v~~i~~Spdg~~l~t~s~d~~ 276 (712)
....|+.|+....|||+|+.+| ++|..+.+.. + . .. ++ +|. .|..+.|+-..+.|-|...+
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~-- 92 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS-- 92 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC--
Confidence 3567999999999999999999 6676543110 0 0 00 11 244 49999999999999888888
Q ss_pred CCCcCCCccEEEEEEccCCceeeeccCCCc-ccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecc
Q 005140 277 SNPRDANRVVINIFDVRTGKVMRDFKGSAD-EFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLID 354 (712)
Q Consensus 277 ~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~ 354 (712)
|.|.||-+-.|.....+..... .+ -.+++|.. ||+.|+..- ||.|.|=.++.. .+.
T Consensus 93 --------GlIiVWmlykgsW~EEMiNnRnKSv------------V~SmsWn~-dG~kIcIvYeDGavIVGsvdGN-RIw 150 (1189)
T KOG2041|consen 93 --------GLIIVWMLYKGSWCEEMINNRNKSV------------VVSMSWNL-DGTKICIVYEDGAVIVGSVDGN-RIW 150 (1189)
T ss_pred --------ceEEEEeeecccHHHHHhhCcCccE------------EEEEEEcC-CCcEEEEEEccCCEEEEeeccc-eec
Confidence 9999999988876554433222 11 01689999 999988887 998887776643 333
Q ss_pred cccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc-------c-ceeeeee---eeecceeEEE------
Q 005140 355 KKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK-------E-ELRQKNL---FSVSDCKMYW------ 417 (712)
Q Consensus 355 ~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~-------~-~~~~~~~---~~~~~~~~~~------ 417 (712)
.+.++..-...+.||+|...+++ +-.++. +.+|+.... . .+..... +......+.|
T Consensus 151 gKeLkg~~l~hv~ws~D~~~~Lf-----~~ange--~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~ 223 (1189)
T KOG2041|consen 151 GKELKGQLLAHVLWSEDLEQALF-----KKANGE--THLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQ 223 (1189)
T ss_pred chhcchheccceeecccHHHHHh-----hhcCCc--EEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccc
Confidence 44344444668899999887776 434444 444444321 0 1111111 1111223344
Q ss_pred --CcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCC------CCe
Q 005140 418 --QSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSP------RPD 489 (712)
Q Consensus 418 --s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~------~~~ 489 (712)
-|+-..|+++..++. .++.+-.....|+- +.. .-.+....|+|+|..||+++.+.. .+.
T Consensus 224 ~v~pdrP~lavcy~nGr---------~QiMR~eND~~Pvv-~dt---gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~ 290 (1189)
T KOG2041|consen 224 PVPPDRPRLAVCYANGR---------MQIMRSENDPEPVV-VDT---GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNK 290 (1189)
T ss_pred cCCCCCCEEEEEEcCce---------ehhhhhcCCCCCeE-Eec---ccEeecceecCCCcEEEEccCcccccCccccce
Confidence 256678888877765 44544433333321 222 357888999999999999987532 236
Q ss_pred EEEEEeecccccCceeEEEEe--CCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECCCC
Q 005140 490 ISFYSMRTAQHAGRVSKLTTL--KGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTG 567 (712)
Q Consensus 490 v~i~d~~~~~~~~~~~~~~~~--~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg 567 (712)
|.+|..-.. .+.++ ++..|++++|-..|-.++.+. |+.|+|-+++-- ..|..-.
T Consensus 291 v~Fysp~G~-------i~gtlkvpg~~It~lsWEg~gLriA~Av----dsfiyfanIRP~-------------ykWgy~e 346 (1189)
T KOG2041|consen 291 VHFYSPYGH-------IVGTLKVPGSCITGLSWEGTGLRIAIAV----DSFIYFANIRPE-------------YKWGYIE 346 (1189)
T ss_pred EEEeccchh-------heEEEecCCceeeeeEEcCCceEEEEEe----cceEEEEeeccc-------------ceEEEee
Confidence 777765211 23333 466799999999999999887 789998887621 1222222
Q ss_pred CEEEEEEccceeccccEEEEEecCceeeeecccceeeeEEecCCCCCCChhhHH
Q 005140 568 RYVATAVTSVHEMENGFNIWSFNGKLLYRTLKDHFFQFLWRPRPPSFLTPEKEE 621 (712)
Q Consensus 568 ~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~~~~~i~~~~w~p~~~~l~s~~~d~ 621 (712)
..++......-...-.|.+||...+.-+.....++.++++..+.-.|++...++
T Consensus 347 ~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~ 400 (1189)
T KOG2041|consen 347 ETVVYVYQKEELPQYGIMFWDTKTNEKTVKTVTHFENMAFYREHCVLINRQDDG 400 (1189)
T ss_pred eEEEEEEccCCCcceEEEEEecccChhhhhhhcceeehheecccEEEEeccccC
Confidence 233333322112245677788765443333334444444444433333333333
No 273
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.24 E-value=3.2e-11 Score=121.75 Aligned_cols=82 Identities=21% Similarity=0.278 Sum_probs=72.3
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-..+|||.|||. ...+++|+++|++||.|+. +.|+.|+.||++||||||+|.+.++|++|++.||+..+++.
T Consensus 192 ~~~~lfV~nLp~------~vtee~L~~~F~~fG~V~~--v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~ 263 (346)
T TIGR01659 192 KDTNLYVTNLPR------TITDDQLDTIFGKYGQIVQ--KNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGG 263 (346)
T ss_pred ccceeEEeCCCC------cccHHHHHHHHHhcCCEEE--EEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 356899999997 4458899999999999999 99999999999999999999999999999999999988654
Q ss_pred -eEEEEEeecc
Q 005140 138 -HIFAVNMFDD 147 (712)
Q Consensus 138 -~~l~v~~~~~ 147 (712)
+.+.|.....
T Consensus 264 ~~~l~V~~a~~ 274 (346)
T TIGR01659 264 SQPLTVRLAEE 274 (346)
T ss_pred ceeEEEEECCc
Confidence 5777776544
No 274
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=1.7e-10 Score=113.94 Aligned_cols=302 Identities=17% Similarity=0.221 Sum_probs=194.5
Q ss_pred cccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec--CC-CeeEEEecCC--CCEEEEEcCCCCCCC
Q 005140 206 EPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA--HP-QVKLIDFSPG--EKYLVTYSSHEPSNP 279 (712)
Q Consensus 206 ~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~--~~-~v~~i~~Spd--g~~l~t~s~d~~~~~ 279 (712)
...|..|.++|+.|.|...|+.|++++.+. |.+||+. ......+|. |. +|....|-|. .+.|++++.|
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~-~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~d----- 208 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWV-SGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRD----- 208 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhh-ccCcccccccccccchhhhhccCCCCCcCceecccc-----
Confidence 345688999999999999999999999998 8899999 888888884 33 4777777773 4678999999
Q ss_pred cCCCccEEEEEEcc-CCcee--eeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccc
Q 005140 280 RDANRVVINIFDVR-TGKVM--RDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDK 355 (712)
Q Consensus 280 ~~~~~~~I~iwd~~-~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~ 355 (712)
|++++=.+. +|... ..+..|.+.+. -++.-|.+-.-|.+++ |+.+.-+|+.......+
T Consensus 209 -----gqvr~s~i~~t~~~e~t~rl~~h~g~vh-------------klav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~ 270 (559)
T KOG1334|consen 209 -----GQVRVSEILETGYVENTKRLAPHEGPVH-------------KLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEK 270 (559)
T ss_pred -----CceeeeeeccccceecceecccccCccc-------------eeeecCCCCCcccccccccceeeeeeccCCccce
Confidence 888876653 33322 23334444331 2455552224556666 99998888875543222
Q ss_pred c---ccccc---CeeeEEECCCCC-eEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEE
Q 005140 356 K---SLKVE---NVMDFSWSPTDP-IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKV 428 (712)
Q Consensus 356 ~---~~~~~---~v~~~~~sp~~~-~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~ 428 (712)
. ..+.. +...++..|... .+++ ++.+..++++...--..+.... .+ . .|.|.
T Consensus 271 ~~cr~~~~~~~v~L~~Ia~~P~nt~~faV-----gG~dqf~RvYD~R~~~~e~~n~-~~---~----~f~p~-------- 329 (559)
T KOG1334|consen 271 FVCREADEKERVGLYTIAVDPRNTNEFAV-----GGSDQFARVYDQRRIDKEENNG-VL---D----KFCPH-------- 329 (559)
T ss_pred eeeeccCCccceeeeeEecCCCCcccccc-----CChhhhhhhhcccchhhccccc-hh---h----hcCCc--------
Confidence 1 11222 467788888765 6666 6677666654322111110000 00 0 00110
Q ss_pred cccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCc--e--
Q 005140 429 DRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGR--V-- 504 (712)
Q Consensus 429 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~--~-- 504 (712)
.+ +. ...-.|++++++.++.-|.++..|- .|++|.-.-+.+... .
T Consensus 330 --------------hl------------~~--d~~v~ITgl~Ysh~~sElLaSYnDe---~IYLF~~~~~~G~~p~~~s~ 378 (559)
T KOG1334|consen 330 --------------HL------------VE--DDPVNITGLVYSHDGSELLASYNDE---DIYLFNKSMGDGSEPDPSSP 378 (559)
T ss_pred --------------cc------------cc--cCcccceeEEecCCccceeeeeccc---ceEEeccccccCCCCCCCcc
Confidence 00 00 1144688999998887777777776 788885433322100 0
Q ss_pred --eEEEE-eCCC----ceeE-EEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEE
Q 005140 505 --SKLTT-LKGK----QANA-LFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAV 574 (712)
Q Consensus 505 --~~~~~-~~~~----~v~~-l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s 574 (712)
..++. +++| .|.. -.|-|...|+++|+. -|.|.||+-.+++++.. +...-|+|+.=+|---.||+++
T Consensus 379 ~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSD---CGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSG 455 (559)
T KOG1334|consen 379 REQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSD---CGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSG 455 (559)
T ss_pred hhhccchhhcccccccccceeeeccCccceEEecCc---cceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccC
Confidence 01112 3344 2333 347899999999997 89999999999988764 4445889999999888999999
Q ss_pred ccceeccccEEEEEecC
Q 005140 575 TSVHEMENGFNIWSFNG 591 (712)
Q Consensus 575 ~~~~~~d~~v~iw~~~g 591 (712)
. |..|+||...+
T Consensus 456 i-----d~DVKIWTP~~ 467 (559)
T KOG1334|consen 456 I-----DHDVKIWTPLT 467 (559)
T ss_pred C-----ccceeeecCCc
Confidence 9 99999998643
No 275
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.23 E-value=1.9e-08 Score=104.30 Aligned_cols=314 Identities=17% Similarity=0.206 Sum_probs=161.2
Q ss_pred cCCCcEEEEEec----------CceEEeecccCcceeeeec-CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEE
Q 005140 222 SPLGTYLATVHR----------QGAAVWGGANTFNRLMRYA-HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIF 290 (712)
Q Consensus 222 Spdg~~lat~~~----------~~i~iw~~~~~~~~~~~~~-~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iw 290 (712)
||||++++.... ....|+|+. +........ ...+....|||+|++||..... .|.++
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~-~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~-----------nly~~ 68 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIE-TGEITPLTPPPPKLQDAKWSPDGKYIAFVRDN-----------NLYLR 68 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETT-TTEEEESS-EETTBSEEEE-SSSTEEEEEETT-----------EEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecC-CCceEECcCCccccccceeecCCCeeEEEecC-----------ceEEE
Confidence 799999888542 225688998 544333222 3469999999999999998765 79999
Q ss_pred EccCCceeeeccCCCcccccCCCC-----CcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCe
Q 005140 291 DVRTGKVMRDFKGSADEFAVGGTG-----GVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENV 363 (712)
Q Consensus 291 d~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v 363 (712)
++.++...+........+..|... .+-+. ...+.||| |+++||... +..+..+.+.....-.. ..+.+
T Consensus 69 ~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~-~~~~~WSp-d~~~la~~~~d~~~v~~~~~~~~~~~~~---~yp~~ 143 (353)
T PF00930_consen 69 DLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDR-RSAVWWSP-DSKYLAFLRFDEREVPEYPLPDYSPPDS---QYPEV 143 (353)
T ss_dssp SSTTSEEEESES--TTTEEESB--HHHHHHTSSS-SBSEEE-T-TSSEEEEEEEE-TTS-EEEEEEESSSTE---SS-EE
T ss_pred ECCCCCeEEeccccceeEEcCccceecccccccc-ccceEECC-CCCEEEEEEECCcCCceEEeeccCCccc---cCCcc
Confidence 987775443222221211111110 00000 12689999 999999887 55566555432111000 01112
Q ss_pred eeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcccee--ee---eeeeecceeEEECcCCCEEEE-EEccccccccc
Q 005140 364 MDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELR--QK---NLFSVSDCKMYWQSSGDYLAV-KVDRYTKTKKS 437 (712)
Q Consensus 364 ~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~---~~~~~~~~~~~~s~~g~~l~~-~~~~~~~~~~~ 437 (712)
..+.+ |..|..+-.+.++++++.+.+... .. .....-...+.|.+++..|++ ..++....
T Consensus 144 ~~~~Y-----------Pk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~--- 209 (353)
T PF00930_consen 144 ESIRY-----------PKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNR--- 209 (353)
T ss_dssp EEEE-------------BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTE---
T ss_pred ccccc-----------CCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCE---
Confidence 22222 111334455678888887765422 11 111223456789999995544 44433211
Q ss_pred ccccEEEEEEecCCcceeEEEe-cCCCCceEEEEEe-eCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--
Q 005140 438 TYTGFELFRIKERDIPIEVLEL-DNKNDKIIAFAWE-PKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK-- 513 (712)
Q Consensus 438 ~~~~~~l~~l~~~~~~~~~~~l-~~h~~~v~~~~~s-p~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-- 513 (712)
..+.+++...........+. .+--.....+.|. +++..++..+...+...|.+++..++. ...+..+
T Consensus 210 --~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-------~~~lT~G~~ 280 (353)
T PF00930_consen 210 --LDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-------PRQLTSGDW 280 (353)
T ss_dssp --EEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-------EEESS-SSS
T ss_pred --EEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-------eeccccCce
Confidence 11233333322221111111 1111222355655 777777776664334467777764432 3344433
Q ss_pred ce-eEEEEccCCCeEEEEeccC--CCceEEEEECC-cceeeeeccccce-eeEEECCCCCEEEEEEc
Q 005140 514 QA-NALFWSPSGRFIVLAGLKG--FNGQLEFYNVD-ELETMATAEHFMA-TDVEWDPTGRYVATAVT 575 (712)
Q Consensus 514 ~v-~~l~~spdg~~l~~~~~~~--~dg~v~iwd~~-~~~~~~~~~~~~v-~~~~~spdg~~l~t~s~ 575 (712)
.| ..+.|+++++.|+..+... ....|+..++. ++........... ..+.|||+|++++....
T Consensus 281 ~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 281 EVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp -EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred eecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 45 4588999988877655432 24567777777 5555443333333 58999999998876654
No 276
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=1.6e-11 Score=111.69 Aligned_cols=79 Identities=25% Similarity=0.328 Sum_probs=70.5
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.-.|+|+-|.. +...+.||+.|.+||+|.+ +.+.+|..|+++|||+||.|.++++|++||..|||.-|++|
T Consensus 62 hfhvfvgdls~------eI~~e~lr~aF~pFGevS~--akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R- 132 (321)
T KOG0148|consen 62 HFHVFVGDLSP------EIDNEKLREAFAPFGEVSD--AKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRR- 132 (321)
T ss_pred ceeEEehhcch------hcchHHHHHHhcccccccc--ceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccc-
Confidence 45789999986 4447779999999999999 99999999999999999999999999999999999999885
Q ss_pred EEEEEeec
Q 005140 139 IFAVNMFD 146 (712)
Q Consensus 139 ~l~v~~~~ 146 (712)
.++.|...
T Consensus 133 ~IRTNWAT 140 (321)
T KOG0148|consen 133 TIRTNWAT 140 (321)
T ss_pred eeeccccc
Confidence 77776643
No 277
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=6.4e-12 Score=118.60 Aligned_cols=84 Identities=31% Similarity=0.473 Sum_probs=76.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
+-|.|||+.+.. +.-|..||..|.+||.|++ |.|.+|+.|+++||||||+|+-+|.|..|.+.|||..++|+
T Consensus 112 iMcRvYVGSIsf------El~EDtiR~AF~PFGPIKS--InMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGR 183 (544)
T KOG0124|consen 112 IMCRVYVGSISF------ELREDTIRRAFDPFGPIKS--INMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGR 183 (544)
T ss_pred HhHheeeeeeEE------EechHHHHhhccCCCCcce--eecccccccccccceEEEEEeCcHHHHHHHHHhccccccCc
Confidence 459999999997 6669999999999999999 99999999999999999999999999999999999999986
Q ss_pred eEEEEEeeccccc
Q 005140 138 HIFAVNMFDDFDK 150 (712)
Q Consensus 138 ~~l~v~~~~~~~~ 150 (712)
-++|.+..+..+
T Consensus 184 -NiKVgrPsNmpQ 195 (544)
T KOG0124|consen 184 -NIKVGRPSNMPQ 195 (544)
T ss_pred -cccccCCCCCcc
Confidence 888887665443
No 278
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.22 E-value=7.5e-08 Score=110.19 Aligned_cols=300 Identities=17% Similarity=0.260 Sum_probs=167.0
Q ss_pred CcccceEEEcCCCcEEEEEecCc-eEEeecc--------------cC--------cceeeeec-----------------
Q 005140 213 YWTESFVQWSPLGTYLATVHRQG-AAVWGGA--------------NT--------FNRLMRYA----------------- 252 (712)
Q Consensus 213 ~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~--------------~~--------~~~~~~~~----------------- 252 (712)
...|.+++||||+..||.....+ +.+.... +. ++.-.+|+
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~ 199 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP 199 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence 45789999999999999998876 4433211 00 00111110
Q ss_pred ---------CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCe
Q 005140 253 ---------HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPV 323 (712)
Q Consensus 253 ---------~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (712)
..+-..|+|-.||+|+|+.+.++.. +....|+||+ +.|.+..+-.. +.|+.- +
T Consensus 200 ~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~----~~~R~iRVy~-ReG~L~stSE~------------v~gLe~-~ 261 (928)
T PF04762_consen 200 KVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPET----GSRRVIRVYS-REGELQSTSEP------------VDGLEG-A 261 (928)
T ss_pred ccccCccccCCCceEEEECCCCcEEEEEEEEcCC----CceeEEEEEC-CCceEEecccc------------CCCccC-C
Confidence 1124578899999999988874211 1237899999 56764433321 222222 5
Q ss_pred EEecCCCCCEEEEec----CCeEEEEEcCCceeccccccc----ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEe
Q 005140 324 FRWGGGKDKYFAKLG----KNMISVYETESFTLIDKKSLK----VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQ 395 (712)
Q Consensus 324 ~~~s~~dg~~la~~~----d~~i~iwd~~~~~~~~~~~~~----~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~ 395 (712)
++|.| .|++||+.. ...|.+|+-+..+ -....+. ...|..+.|++++..||++.. +. |.+|.
T Consensus 262 l~WrP-sG~lIA~~q~~~~~~~VvFfErNGLr-hgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~-----~~---vqLWt 331 (928)
T PF04762_consen 262 LSWRP-SGNLIASSQRLPDRHDVVFFERNGLR-HGEFTLRFDPEEEKVIELAWNSDSEILAVWLE-----DR---VQLWT 331 (928)
T ss_pred ccCCC-CCCEEEEEEEcCCCcEEEEEecCCcE-eeeEecCCCCCCceeeEEEECCCCCEEEEEec-----CC---ceEEE
Confidence 89999 999999887 3556677654221 1112222 235899999999999999642 22 55666
Q ss_pred cCCccceeeeeee-e-e-cceeEEECcCCC-EEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEE
Q 005140 396 IPSKEELRQKNLF-S-V-SDCKMYWQSSGD-YLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAW 471 (712)
Q Consensus 396 ~~~~~~~~~~~~~-~-~-~~~~~~~s~~g~-~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~ 471 (712)
....+......+. . . ....+.|+|... .|.+.+..+. +..+++. ..++.
T Consensus 332 ~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~---------~~~~~~~------------------~~v~~ 384 (928)
T PF04762_consen 332 RSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQ---------YEIYDFA------------------WDVSR 384 (928)
T ss_pred eeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCc---------EEEEEEE------------------EEEEe
Confidence 5554432222221 1 1 122378998654 3444444322 2222211 01111
Q ss_pred e----eCC-CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 472 E----PKG-HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 472 s----p~g-~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
+ |+. ...++. ||. ++.+-.++........ ....+. ..++++++|++++..+++... +|.|.+|...
T Consensus 385 s~~~~~~D~g~vaVI--DG~--~lllTpf~~a~VPPPM-s~~~l~~~~~v~~vaf~~~~~~~avl~~---d~~l~~~~~~ 456 (928)
T PF04762_consen 385 SPGSSPNDNGTVAVI--DGN--KLLLTPFRRAVVPPPM-SSYELELPSPVNDVAFSPSNSRFAVLTS---DGSLSIYEWD 456 (928)
T ss_pred cCCCCccCceEEEEE--eCC--eEEEecccccCCCchH-hceEEcCCCCcEEEEEeCCCCeEEEEEC---CCCEEEEEec
Confidence 1 211 123333 332 5777666543322111 112222 457999999999987777766 9999999854
Q ss_pred cceee--------ee------------ccccceeeEEECCCCCEEEEEEc
Q 005140 546 ELETM--------AT------------AEHFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 546 ~~~~~--------~~------------~~~~~v~~~~~spdg~~l~t~s~ 575 (712)
..... .. .....+..++|..+...++....
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (928)
T PF04762_consen 457 LKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDS 506 (928)
T ss_pred CCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEec
Confidence 21110 00 12244667888777766555544
No 279
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.22 E-value=3.3e-11 Score=128.15 Aligned_cols=77 Identities=26% Similarity=0.318 Sum_probs=71.3
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.++|||+|||. +..+++|+++|++||.|.+ +.|+.|+.+|++||||||+|.+.++|.+|++.|||+.++|+
T Consensus 204 ~~rLfVgnLp~------~vteedLk~lFs~FG~I~s--vrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr- 274 (612)
T TIGR01645 204 FNRIYVASVHP------DLSETDIKSVFEAFGEIVK--CQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQ- 274 (612)
T ss_pred cceEEeecCCC------CCCHHHHHHHHhhcCCeeE--EEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCe-
Confidence 46899999997 4558999999999999999 99999999999999999999999999999999999999986
Q ss_pred EEEEEe
Q 005140 139 IFAVNM 144 (712)
Q Consensus 139 ~l~v~~ 144 (712)
.++|.+
T Consensus 275 ~LrV~k 280 (612)
T TIGR01645 275 YLRVGK 280 (612)
T ss_pred EEEEEe
Confidence 888875
No 280
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.21 E-value=2.2e-11 Score=113.93 Aligned_cols=78 Identities=18% Similarity=0.343 Sum_probs=70.4
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.+.|+|.|||+ ..-+-+|+.+|.+||+|.+ |.|..++ .-+||||||+|++.+||++|-.+|||..+.||
T Consensus 95 ~pkRLhVSNIPF------rFRdpDL~aMF~kfG~Vld--VEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGR 164 (376)
T KOG0125|consen 95 TPKRLHVSNIPF------RFRDPDLRAMFEKFGKVLD--VEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGR 164 (376)
T ss_pred CCceeEeecCCc------cccCccHHHHHHhhCceee--EEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeece
Confidence 457999999997 5558899999999999999 9999986 56999999999999999999999999999996
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|+...
T Consensus 165 -kIEVn~AT 172 (376)
T KOG0125|consen 165 -KIEVNNAT 172 (376)
T ss_pred -EEEEeccc
Confidence 88888754
No 281
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.21 E-value=6.1e-11 Score=110.77 Aligned_cols=77 Identities=21% Similarity=0.299 Sum_probs=67.5
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.++|||+|||. ...+.+|+++|++||+|.+ |.|+.|+. ++|||||+|.++++|..|+. |||..|.++
T Consensus 4 ~rtVfVgNLs~------~tTE~dLrefFS~~G~I~~--V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr- 70 (260)
T PLN03120 4 VRTVKVSNVSL------KATERDIKEFFSFSGDIEY--VEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQ- 70 (260)
T ss_pred CCEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCc-
Confidence 46999999997 4559999999999999999 99999873 57999999999999999995 999999886
Q ss_pred EEEEEeeccc
Q 005140 139 IFAVNMFDDF 148 (712)
Q Consensus 139 ~l~v~~~~~~ 148 (712)
.+.|....+.
T Consensus 71 ~V~Vt~a~~~ 80 (260)
T PLN03120 71 SVTITPAEDY 80 (260)
T ss_pred eEEEEeccCC
Confidence 8888875543
No 282
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.20 E-value=8e-11 Score=90.47 Aligned_cols=86 Identities=19% Similarity=0.384 Sum_probs=70.8
Q ss_pred ccccCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCC
Q 005140 53 EVESGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGY 132 (712)
Q Consensus 53 ~~~~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~ 132 (712)
.++.-..+.+||.|||. ..+.+.+.++|++||.|.. |.+-.++ .++|-|||.|++..+|++|++.|+|+
T Consensus 12 rlppevnriLyirNLp~------~ITseemydlFGkyg~IrQ--IRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~ 80 (124)
T KOG0114|consen 12 RLPPEVNRILYIRNLPF------KITSEEMYDLFGKYGTIRQ--IRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGY 80 (124)
T ss_pred CCChhhheeEEEecCCc------cccHHHHHHHhhcccceEE--EEecCcc---CcCceEEEEehHhhhHHHHHHHhccc
Confidence 33344567999999997 5557889999999999999 8887754 68899999999999999999999999
Q ss_pred ccCCceEEEEEeeccccc
Q 005140 133 KLDRAHIFAVNMFDDFDK 150 (712)
Q Consensus 133 ~~~~~~~l~v~~~~~~~~ 150 (712)
.++++ -+.|--+...+.
T Consensus 81 n~~~r-yl~vlyyq~~~~ 97 (124)
T KOG0114|consen 81 NVDNR-YLVVLYYQPEDA 97 (124)
T ss_pred ccCCc-eEEEEecCHHHH
Confidence 99985 666666555443
No 283
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.20 E-value=1.1e-07 Score=108.94 Aligned_cols=330 Identities=15% Similarity=0.216 Sum_probs=184.7
Q ss_pred CcccceEEEcCCCcEEEEEecCc-eEEe----ecccCcceeee-ecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccE
Q 005140 213 YWTESFVQWSPLGTYLATVHRQG-AAVW----GGANTFNRLMR-YAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVV 286 (712)
Q Consensus 213 ~~~v~~v~~Spdg~~lat~~~~~-i~iw----~~~~~~~~~~~-~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~ 286 (712)
...|.++.|-++..-|+.+..+| |.+. +.. ....-.. .-..+|.+++||||+..|+....+ ++
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~-~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~----------~~ 143 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPD-EDEIEIVGSVDSGILAASWSPDEELLALVTGE----------GN 143 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCC-CceeEEEEEEcCcEEEEEECCCcCEEEEEeCC----------CE
Confidence 45788899999998888888888 7666 444 2222221 224579999999999999999888 78
Q ss_pred EEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCe-EE-EEEcCCceec--ccccccccC
Q 005140 287 INIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNM-IS-VYETESFTLI--DKKSLKVEN 362 (712)
Q Consensus 287 I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~-i~-iwd~~~~~~~--~~~~~~~~~ 362 (712)
|.+.+ ++-..+.....+..... ....+ .+-|-. ....|=....+. -+ +=+ ++...+ .... ...+
T Consensus 144 l~~mt-~~fd~i~E~~l~~~~~~--~~~~V------sVGWGk-KeTQF~Gs~gK~aa~~~~~-p~~~~~d~~~~s-~dd~ 211 (928)
T PF04762_consen 144 LLLMT-RDFDPISEVPLDSDDFG--ESKHV------SVGWGK-KETQFHGSAGKAAARQLRD-PTVPKVDEGKLS-WDDG 211 (928)
T ss_pred EEEEe-ccceEEEEeecCccccC--CCcee------eeccCc-ccCccCcchhhhhhhhccC-CCCCccccCccc-cCCC
Confidence 87776 56777766655543320 00000 234433 222221110000 00 000 000000 0111 2234
Q ss_pred eeeEEECCCCCeEEEEeecCCCCCC-CeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccccccc
Q 005140 363 VMDFSWSPTDPIISLFVPELGGGNQ-PARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTG 441 (712)
Q Consensus 363 v~~~~~sp~~~~la~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~ 441 (712)
-..++|-.||.++|+...+. ..+ .-.+.+|+-. +...........-.-.++|.|+|..||+......+ ..
T Consensus 212 ~~~ISWRGDG~yFAVss~~~--~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~------~~ 282 (928)
T PF04762_consen 212 RVRISWRGDGEYFAVSSVEP--ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDR------HD 282 (928)
T ss_pred ceEEEECCCCcEEEEEEEEc--CCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCC------cE
Confidence 67899999999999865432 233 3445555543 11111101111122357899999999987652221 11
Q ss_pred EEEEEEecCCcceeEEEec--CCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC-CceeEE
Q 005140 442 FELFRIKERDIPIEVLELD--NKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG-KQANAL 518 (712)
Q Consensus 442 ~~l~~l~~~~~~~~~~~l~--~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~-~~v~~l 518 (712)
+.+|. .+|..-..+.++ .....|..++|++|+..||+...+ .|.+|...+-... .+....+.. ..+..+
T Consensus 283 VvFfE--rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~----~vqLWt~~NYHWY--LKqei~~~~~~~~~~~ 354 (928)
T PF04762_consen 283 VVFFE--RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED----RVQLWTRSNYHWY--LKQEIRFSSSESVNFV 354 (928)
T ss_pred EEEEe--cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecC----CceEEEeeCCEEE--EEEEEEccCCCCCCce
Confidence 33333 233333334443 345689999999999999998765 4999998542211 122222222 234569
Q ss_pred EEccCC-CeEEEEeccCCCceEEEEECC----c----------------ce-eeee----------------ccccceee
Q 005140 519 FWSPSG-RFIVLAGLKGFNGQLEFYNVD----E----------------LE-TMAT----------------AEHFMATD 560 (712)
Q Consensus 519 ~~spdg-~~l~~~~~~~~dg~v~iwd~~----~----------------~~-~~~~----------------~~~~~v~~ 560 (712)
.|+|.. ..|.+.+. +|.+..+++. . |. ++-+ .-...|.+
T Consensus 355 ~Wdpe~p~~L~v~t~---~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~ 431 (928)
T PF04762_consen 355 KWDPEKPLRLHVLTS---NGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVND 431 (928)
T ss_pred EECCCCCCEEEEEec---CCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEE
Confidence 999953 34544443 3555443321 0 11 1111 11256889
Q ss_pred EEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 561 VEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 561 ~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
++|++++..+++... |+.+.+|...
T Consensus 432 vaf~~~~~~~avl~~-----d~~l~~~~~~ 456 (928)
T PF04762_consen 432 VAFSPSNSRFAVLTS-----DGSLSIYEWD 456 (928)
T ss_pred EEEeCCCCeEEEEEC-----CCCEEEEEec
Confidence 999999988888888 8999999854
No 284
>PLN03213 repressor of silencing 3; Provisional
Probab=99.18 E-value=7.3e-11 Score=116.06 Aligned_cols=77 Identities=13% Similarity=0.170 Sum_probs=68.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCH--HHHHHHHHHhCCCccC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTP--QEAELAKEKTNGYKLD 135 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~--~~a~~a~~~~~~~~~~ 135 (712)
-...||||||+. +..+.+|+.+|+.||.|.. +.|| ++|| ||||||+|... .++.+||..|||..+.
T Consensus 9 ~gMRIYVGNLSy------dVTEDDLravFSeFGsVkd--VEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWK 76 (759)
T PLN03213 9 GGVRLHVGGLGE------SVGRDDLLKIFSPMGTVDA--VEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWK 76 (759)
T ss_pred cceEEEEeCCCC------CCCHHHHHHHHHhcCCeeE--EEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeec
Confidence 346999999998 6669999999999999999 9999 5578 99999999987 7899999999999999
Q ss_pred CceEEEEEeecc
Q 005140 136 RAHIFAVNMFDD 147 (712)
Q Consensus 136 ~~~~l~v~~~~~ 147 (712)
|+ .|+|+....
T Consensus 77 GR-~LKVNKAKP 87 (759)
T PLN03213 77 GG-RLRLEKAKE 87 (759)
T ss_pred Cc-eeEEeeccH
Confidence 96 899987653
No 285
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=7.3e-11 Score=114.49 Aligned_cols=108 Identities=23% Similarity=0.295 Sum_probs=80.1
Q ss_pred CCCCCCCCCCCcccccccCcccccCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEE
Q 005140 33 PGEDLGIISDDEDVYEDDDQEVESGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYC 112 (712)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~ 112 (712)
+..+.++.+-.|... ...+...++-.-++||+-+|+ ...|.+||++|++||.|.+ |.|++|+.||.+||+|
T Consensus 9 ~~~~~~gs~~~~~~~-~~~~d~~d~~~vKlfVgqIpr------t~sE~dlr~lFe~yg~V~e--inl~kDk~t~~s~gcC 79 (510)
T KOG0144|consen 9 PPSPCGGSSLADNGS-LDHTDNPDGSAVKLFVGQIPR------TASEKDLRELFEKYGNVYE--INLIKDKSTGQSKGCC 79 (510)
T ss_pred CCCCCCCcchhhcCC-CCCCCCCCchhhhheeccCCc------cccHHHHHHHHHHhCceeE--EEeecccccCcccceE
Confidence 334444444443333 333344445567999999998 5559999999999999999 9999999999999999
Q ss_pred EEEeCCHHHHHHHHHHhCCC-ccCCceEEEEEeecccc
Q 005140 113 FIEYNTPQEAELAKEKTNGY-KLDRAHIFAVNMFDDFD 149 (712)
Q Consensus 113 fv~~~~~~~a~~a~~~~~~~-~~~~~~~l~v~~~~~~~ 149 (712)
||.|.++++|.+|+..|++. .|.|-|...--++.|-+
T Consensus 80 Fv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E 117 (510)
T KOG0144|consen 80 FVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGE 117 (510)
T ss_pred EEEeccHHHHHHHHHHhhcccccCCCCcceeecccchh
Confidence 99999999999999999885 45554433333344433
No 286
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.17 E-value=6.7e-09 Score=98.44 Aligned_cols=324 Identities=15% Similarity=0.221 Sum_probs=183.0
Q ss_pred cccceEEEcCCCcEEEEEecCc-eEEeecccCcc----eeeeec-C-------------CCeeEEEecCCCC--EEEEEc
Q 005140 214 WTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN----RLMRYA-H-------------PQVKLIDFSPGEK--YLVTYS 272 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~----~~~~~~-~-------------~~v~~i~~Spdg~--~l~t~s 272 (712)
..+++|.|...|.+||||..+| |.++.-..... ....++ | ..|..+.|.+++. .++...
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 5678999999999999999999 77875442222 122221 1 1378899998874 333444
Q ss_pred CCCCCCCcCCCccEEEEEEccCCceee--------------------eccCCCcccccCCC----CCcCCCCcCeEEecC
Q 005140 273 SHEPSNPRDANRVVINIFDVRTGKVMR--------------------DFKGSADEFAVGGT----GGVAGVSWPVFRWGG 328 (712)
Q Consensus 273 ~d~~~~~~~~~~~~I~iwd~~~g~~~~--------------------~~~~~~~~~~~~~~----~~~~~~~~~~~~~s~ 328 (712)
.| .+|++|.+....... .+..+...+. ..+ .........++.++.
T Consensus 106 Nd----------ktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~ve-a~prRv~aNaHtyhiNSIS~Ns 174 (433)
T KOG1354|consen 106 ND----------KTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVE-ASPRRVYANAHTYHINSISVNS 174 (433)
T ss_pred CC----------cceeeeeeeccccccccccccccCCCCccceeeceeeccccceee-eeeeeeccccceeEeeeeeecC
Confidence 55 689999874332111 1111111000 000 011111223678888
Q ss_pred CCCCEEEEecCCeEEEEEcC----Cceeccccccccc----CeeeEEECCCC-CeEEEEeecCCCCCCCeEEEEEecCCc
Q 005140 329 GKDKYFAKLGKNMISVYETE----SFTLIDKKSLKVE----NVMDFSWSPTD-PIISLFVPELGGGNQPARVSLVQIPSK 399 (712)
Q Consensus 329 ~dg~~la~~~d~~i~iwd~~----~~~~~~~~~~~~~----~v~~~~~sp~~-~~la~~~~~~~~~~~~~~i~~~~~~~~ 399 (712)
|...+.++.|=.|.+|++. ++..++.+...+. -|++..|+|.. +.+++ .+..+.+++..+.....
T Consensus 175 -D~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~Y-----SSSKGtIrLcDmR~~aL 248 (433)
T KOG1354|consen 175 -DKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVY-----SSSKGTIRLCDMRQSAL 248 (433)
T ss_pred -ccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEE-----ecCCCcEEEeechhhhh
Confidence 9999999999999999986 3444444433333 37888999985 45555 55666666655542111
Q ss_pred -----c------ceeeeeeee---ecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCC---
Q 005140 400 -----E------ELRQKNLFS---VSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNK--- 462 (712)
Q Consensus 400 -----~------~~~~~~~~~---~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h--- 462 (712)
+ ....+.++. .++..+.|+++|+|+++.. |-.+.+|++.....|+....+...
T Consensus 249 Cd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD----------yltvk~wD~nme~~pv~t~~vh~~lr~ 318 (433)
T KOG1354|consen 249 CDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD----------YLTVKLWDLNMEAKPVETYPVHEYLRS 318 (433)
T ss_pred hcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec----------cceeEEEeccccCCcceEEeehHhHHH
Confidence 0 011122222 2334567899999998743 334799999887788776665211
Q ss_pred -------CCce---EEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCc-eeEEEEccCCCeEEEEe
Q 005140 463 -------NDKI---IAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQ-ANALFWSPSGRFIVLAG 531 (712)
Q Consensus 463 -------~~~v---~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~-v~~l~~spdg~~l~~~~ 531 (712)
++.| ..++|+-++.++.+|+... .+++|++..+.. .-.+++... .....--..-+.+.+++
T Consensus 319 kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n---~frvf~~~~gsk-----~d~tl~asr~~~~~~~~~k~~~V~~~g 390 (433)
T KOG1354|consen 319 KLCSLYENDAIFDKFECSWSGNDSYVMTGSYNN---VFRVFNLARGSK-----EDFTLEASRKNMKPRKVLKLRLVSSSG 390 (433)
T ss_pred HHHHHhhccchhheeEEEEcCCcceEecccccc---eEEEecCCCCcc-----eeecccccccCCcccccccceeeecCC
Confidence 1222 2478998999999999877 899999755442 112222110 00000001122333333
Q ss_pred ccCCCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEccceeccccEEEE
Q 005140 532 LKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIW 587 (712)
Q Consensus 532 ~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw 587 (712)
. .....++- -...-...+...+|+|....||.+.. +.++||
T Consensus 391 ~---r~~~~~~v------d~ldf~kkilh~aWhp~en~ia~aat------nnlyif 431 (433)
T KOG1354|consen 391 K---RKRDEISV------DALDFRKKILHTAWHPKENSIAVAAT------NNLYIF 431 (433)
T ss_pred C---cccccccc------chhhhhhHHHhhccCCccceeeeeec------CceEEe
Confidence 3 22211110 00011134556799999999999887 566665
No 287
>smart00361 RRM_1 RNA recognition motif.
Probab=99.17 E-value=9.9e-11 Score=89.05 Aligned_cols=60 Identities=17% Similarity=0.264 Sum_probs=51.0
Q ss_pred HHHHHHhh----ccCeeeeceEE-EeccCCC--CCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEEEE
Q 005140 80 GVIRKIYS----QIGVIKEDGLW-MPVDPET--QKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAV 142 (712)
Q Consensus 80 ~~l~~~f~----~~g~v~~~~~~-~~~d~~~--~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l~v 142 (712)
.+|++.|+ +||.|.+ +. +++|+.+ |+++|||||+|.+.++|.+|++.|||..++++ .+.+
T Consensus 3 ~~l~~~~~~~~~~fG~v~~--v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr-~l~~ 69 (70)
T smart00361 3 EDFEREFSEEEEYFGEVGK--INKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGR-TVKA 69 (70)
T ss_pred hhHHHHHHHHHHhcCCeeE--EEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE-EEEe
Confidence 45666666 9999999 85 7777766 99999999999999999999999999999986 5544
No 288
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.16 E-value=7.4e-11 Score=125.40 Aligned_cols=78 Identities=23% Similarity=0.423 Sum_probs=69.4
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
.++.|||+|||. +..+++|+++|++||.|.+ +.|++| .+|++||||||+|.+.++|++|++.||++.+...
T Consensus 57 ~~~~lFVgnLp~------~~tEd~L~~~F~~~G~I~~--vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~G 127 (578)
T TIGR01648 57 RGCEVFVGKIPR------DLYEDELVPLFEKAGPIYE--LRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPG 127 (578)
T ss_pred CCCEEEeCCCCC------CCCHHHHHHHHHhhCCEEE--EEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCC
Confidence 468999999997 5669999999999999999 999999 5999999999999999999999999999988644
Q ss_pred eEEEEEe
Q 005140 138 HIFAVNM 144 (712)
Q Consensus 138 ~~l~v~~ 144 (712)
+.+.|+.
T Consensus 128 r~l~V~~ 134 (578)
T TIGR01648 128 RLLGVCI 134 (578)
T ss_pred ccccccc
Confidence 4555543
No 289
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.14 E-value=1e-10 Score=94.51 Aligned_cols=77 Identities=31% Similarity=0.408 Sum_probs=69.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+-+|||.|+-. +..|+++...|.-||+|+. |++-+|+.||-.||||.|+|++.++|+.|+..+||..|-+.
T Consensus 71 EGwIi~VtgvHe------EatEedi~d~F~dyGeiKN--ihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q 142 (170)
T KOG0130|consen 71 EGWIIFVTGVHE------EATEEDIHDKFADYGEIKN--IHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQ 142 (170)
T ss_pred eeEEEEEeccCc------chhHHHHHHHHhhcccccc--eeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCC
Confidence 356899999987 7779999999999999999 99999999999999999999999999999999999988775
Q ss_pred eEEEEE
Q 005140 138 HIFAVN 143 (712)
Q Consensus 138 ~~l~v~ 143 (712)
.+.|-
T Consensus 143 -~v~VD 147 (170)
T KOG0130|consen 143 -NVSVD 147 (170)
T ss_pred -ceeEE
Confidence 44443
No 290
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.13 E-value=1.9e-07 Score=96.87 Aligned_cols=308 Identities=14% Similarity=0.175 Sum_probs=155.2
Q ss_pred cCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCe
Q 005140 262 SPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNM 341 (712)
Q Consensus 262 Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~ 341 (712)
|||+++++........ -+....+.+.|||+.+++............ ...||| +|+++|...++.
T Consensus 1 S~d~~~~l~~~~~~~~-~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~--------------~~~~sP-~g~~~~~v~~~n 64 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQ-WRHSFKGDYYIYDIETGEITPLTPPPPKLQ--------------DAKWSP-DGKYIAFVRDNN 64 (353)
T ss_dssp -TTSSEEEEEEEEEEE-SSSEEEEEEEEEETTTTEEEESS-EETTBS--------------EEEE-S-SSTEEEEEETTE
T ss_pred CCCCCeEEEEECcEEe-eeeccceeEEEEecCCCceEECcCCccccc--------------cceeec-CCCeeEEEecCc
Confidence 7999998875432110 011122678999998876555444322222 589999 999999999999
Q ss_pred EEEEEcCCceeccccccc-----------------ccCeeeEEECCCCCeEEEEeecCCCCCCCeEE-EEEecCCccc-e
Q 005140 342 ISVYETESFTLIDKKSLK-----------------VENVMDFSWSPTDPIISLFVPELGGGNQPARV-SLVQIPSKEE-L 402 (712)
Q Consensus 342 i~iwd~~~~~~~~~~~~~-----------------~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i-~~~~~~~~~~-~ 402 (712)
|.+++..++....-..-- ...-..+-||||+++||++.-.. ..++. .+........ .
T Consensus 65 ly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~----~~v~~~~~~~~~~~~~~y 140 (353)
T PF00930_consen 65 LYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDE----REVPEYPLPDYSPPDSQY 140 (353)
T ss_dssp EEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-----TTS-EEEEEEESSSTESS
T ss_pred eEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECC----cCCceEEeeccCCccccC
Confidence 999998766433211000 12235688999999999864332 22221 2211111100 0
Q ss_pred eeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEec----CCCCceEEEEEeeCCCEE
Q 005140 403 RQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELD----NKNDKIIAFAWEPKGHRF 478 (712)
Q Consensus 403 ~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~----~h~~~v~~~~~sp~g~~l 478 (712)
. ....+.+-.-|.-. ..+.++.+...+.....+..+ .....+..+.|+++++.|
T Consensus 141 p-------~~~~~~YPk~G~~n---------------p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l 198 (353)
T PF00930_consen 141 P-------EVESIRYPKAGDPN---------------PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRL 198 (353)
T ss_dssp --------EEEEEE--BTTS------------------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEE
T ss_pred C-------cccccccCCCCCcC---------------CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEE
Confidence 0 00001111111110 112333333222222222222 335568899999999956
Q ss_pred EEEEcCCCCC--eEEEEEeecccccCceeEEEE-eCCCce---eEEEEc-cCCCeEEEEeccCCCceEEEEECCcceeee
Q 005140 479 AVIHGDSPRP--DISFYSMRTAQHAGRVSKLTT-LKGKQA---NALFWS-PSGRFIVLAGLKGFNGQLEFYNVDELETMA 551 (712)
Q Consensus 479 ~~~~~d~~~~--~v~i~d~~~~~~~~~~~~~~~-~~~~~v---~~l~~s-pdg~~l~~~~~~~~dg~v~iwd~~~~~~~~ 551 (712)
++...+...+ .+.++|..++.. ..+.. .....+ ..+.|. +++..++..+..+.-..|++++..++....
T Consensus 199 ~~~~~nR~q~~~~l~~~d~~tg~~----~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~ 274 (353)
T PF00930_consen 199 WVQWLNRDQNRLDLVLCDASTGET----RVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQ 274 (353)
T ss_dssp EEEEEETTSTEEEEEEEEECTTTC----EEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEE
T ss_pred EEEEcccCCCEEEEEEEECCCCce----eEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceec
Confidence 5554433222 445556544332 23322 223322 356665 777766666553324567777777665333
Q ss_pred -ecccccee-eEEECCCCCEEEEEEccceeccccEEEEEec-Cceeeeecc-cce-eeeEEecCCCCCC
Q 005140 552 -TAEHFMAT-DVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRTLK-DHF-FQFLWRPRPPSFL 615 (712)
Q Consensus 552 -~~~~~~v~-~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~~~-~~i-~~~~w~p~~~~l~ 615 (712)
+.....|+ -+.|+++++.|...+.........++.-++. +..+..... ... ..+.+||++++++
T Consensus 275 lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v 343 (353)
T PF00930_consen 275 LTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYV 343 (353)
T ss_dssp SS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEE
T ss_pred cccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEE
Confidence 23345564 4789999998776665311112244444555 444444322 222 5899999998765
No 291
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.13 E-value=8e-09 Score=107.79 Aligned_cols=139 Identities=14% Similarity=0.184 Sum_probs=101.6
Q ss_pred cceEEEcCCCcEEEEEecCceEEeecccCcceeeeecCC--CeeEEEecCCC------------CEEEEEcCCCCCCCcC
Q 005140 216 ESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHP--QVKLIDFSPGE------------KYLVTYSSHEPSNPRD 281 (712)
Q Consensus 216 v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~--~v~~i~~Spdg------------~~l~t~s~d~~~~~~~ 281 (712)
-.++.|||.| +||+|+..-|.|.|.. +.+.+..+.+. .|+.+.|+|-. -.||++...
T Consensus 18 ~~A~Dw~~~G-LiAygshslV~VVDs~-s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~------- 88 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSHSLVSVVDSR-SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADIS------- 88 (1062)
T ss_pred ccccccCccc-eEEEecCceEEEEehh-hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEecccc-------
Confidence 4578999988 8999999999999998 88888877543 49999998632 134444444
Q ss_pred CCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC-CEEEEec-CCeEEEEEcCCceeccccccc
Q 005140 282 ANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD-KYFAKLG-KNMISVYETESFTLIDKKSLK 359 (712)
Q Consensus 282 ~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg-~~la~~~-d~~i~iwd~~~~~~~~~~~~~ 359 (712)
|.|.+||...+..+..+..+...+ ..+.| +-|-+ +. .+|+... ...|.+|+..+|..+.++...
T Consensus 89 ---GrIil~d~~~~s~~~~l~~~~~~~--------qdl~W--~~~rd-~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys 154 (1062)
T KOG1912|consen 89 ---GRIILVDFVLASVINWLSHSNDSV--------QDLCW--VPARD-DSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS 154 (1062)
T ss_pred ---CcEEEEEehhhhhhhhhcCCCcch--------hheee--eeccC-cchheeEEecCCcEEEEEEccCCceeeccccC
Confidence 899999999998888888776664 22333 22333 44 3455444 899999999999999888777
Q ss_pred ccCeeeEEECCC-CCeEEE
Q 005140 360 VENVMDFSWSPT-DPIISL 377 (712)
Q Consensus 360 ~~~v~~~~~sp~-~~~la~ 377 (712)
.....|+.+.|- .+++.+
T Consensus 155 ~~iLs~f~~DPfd~rh~~~ 173 (1062)
T KOG1912|consen 155 HEILSCFRVDPFDSRHFCV 173 (1062)
T ss_pred CcceeeeeeCCCCcceEEE
Confidence 666788888885 334443
No 292
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.12 E-value=1e-08 Score=97.29 Aligned_cols=277 Identities=16% Similarity=0.243 Sum_probs=162.8
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC-c----eeeeccCCCcccc----cCCCCCcCCCCcCeEE
Q 005140 255 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG-K----VMRDFKGSADEFA----VGGTGGVAGVSWPVFR 325 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g-~----~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 325 (712)
-+.++.|..+|.+||||..+ |.|.+|.-... + ....++.|..... ......+. .++
T Consensus 27 iis~vef~~~Ge~LatGdkg----------GRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKin-----kIr 91 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDKG----------GRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKIN-----KIR 91 (433)
T ss_pred ceeeEEeecccceEeecCCC----------CeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhh-----hce
Confidence 38999999999999999999 99999863221 1 2344544543321 01111222 467
Q ss_pred ecCCCCC---EEEEecCCeEEEEEcCCceecc-ccc----ccccCeeeEE---ECCCCCeEEEEeecCCCCCCCeEEEEE
Q 005140 326 WGGGKDK---YFAKLGKNMISVYETESFTLID-KKS----LKVENVMDFS---WSPTDPIISLFVPELGGGNQPARVSLV 394 (712)
Q Consensus 326 ~s~~dg~---~la~~~d~~i~iwd~~~~~~~~-~~~----~~~~~v~~~~---~sp~~~~la~~~~~~~~~~~~~~i~~~ 394 (712)
|.+ ++. +|.++.|.+|++|.+....... ... .....+..+. ..|....+.+ .|. ++
T Consensus 92 w~~-~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea-~pr--------Rv--- 158 (433)
T KOG1354|consen 92 WLD-DGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEA-SPR--------RV--- 158 (433)
T ss_pred ecC-CCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeee-eee--------ee---
Confidence 877 554 5666669999999886332111 000 1111122221 1222222211 000 00
Q ss_pred ecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCC-----CceEEE
Q 005140 395 QIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKN-----DKIIAF 469 (712)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~-----~~v~~~ 469 (712)
-.+.+....-++..+.|+..++++.+- . +.||.+.........+.+.+++ .-|++.
T Consensus 159 ---------~aNaHtyhiNSIS~NsD~Et~lSADdL-R---------INLWnlei~d~sFnIVDIKP~nmEeLteVITsa 219 (433)
T KOG1354|consen 159 ---------YANAHTYHINSISVNSDKETFLSADDL-R---------INLWNLEIIDQSFNIVDIKPANMEELTEVITSA 219 (433)
T ss_pred ---------ccccceeEeeeeeecCccceEeeccce-e---------eeeccccccCCceeEEEccccCHHHHHHHHhhh
Confidence 011122223344567777766654332 1 5788887666555555554443 458889
Q ss_pred EEee-CCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC------------CceeEEEEccCCCeEEEEeccCCC
Q 005140 470 AWEP-KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG------------KQANALFWSPSGRFIVLAGLKGFN 536 (712)
Q Consensus 470 ~~sp-~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~------------~~v~~l~~spdg~~l~~~~~~~~d 536 (712)
.|+| ..+.|+..+..| +|++.|++....-..-..+...+. ..|..+.||++|+|+++-.+
T Consensus 220 EFhp~~cn~f~YSSSKG---tIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy---- 292 (433)
T KOG1354|consen 220 EFHPHHCNVFVYSSSKG---TIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY---- 292 (433)
T ss_pred ccCHhHccEEEEecCCC---cEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc----
Confidence 9999 567888888888 999999974321000001111111 13678999999999999874
Q ss_pred ceEEEEECC-cceeeee--------------ccccce---eeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 537 GQLEFYNVD-ELETMAT--------------AEHFMA---TDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 537 g~v~iwd~~-~~~~~~~--------------~~~~~v---~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
-+|++||+. ..+.+.+ .....| ..++||.++.+++||+. .+.+++++..
T Consensus 293 ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy-----~n~frvf~~~ 359 (433)
T KOG1354|consen 293 LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSY-----NNVFRVFNLA 359 (433)
T ss_pred ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccc-----cceEEEecCC
Confidence 789999995 2222221 111222 36899999999999999 8999999854
No 293
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.12 E-value=5.6e-08 Score=87.95 Aligned_cols=285 Identities=13% Similarity=0.151 Sum_probs=164.9
Q ss_pred cCCCcccceEEEcCCCcEEEEEecCc-eEEeeccc---------Ccceeee-ecCCC-eeEEEecCCCCEEEEEcCCCCC
Q 005140 210 KRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGAN---------TFNRLMR-YAHPQ-VKLIDFSPGEKYLVTYSSHEPS 277 (712)
Q Consensus 210 ~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~---------~~~~~~~-~~~~~-v~~i~~Spdg~~l~t~s~d~~~ 277 (712)
++...+|..-+|||.++||+.|...| |.+..+.. ....+.. -.|.+ |..++|. ..+|++++ |
T Consensus 7 ~r~~~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-d--- 80 (325)
T KOG0649|consen 7 KRAYNTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-D--- 80 (325)
T ss_pred HHHHHHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-C---
Confidence 44456778889999999999999999 77876541 1112222 23554 9999998 45677665 4
Q ss_pred CCcCCCccEEEEEEccCCc------eeeec--cCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCC
Q 005140 278 NPRDANRVVINIFDVRTGK------VMRDF--KGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETES 349 (712)
Q Consensus 278 ~~~~~~~~~I~iwd~~~g~------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~ 349 (712)
|.|+=|.-.... .+... +.+.+.+ .+.. .+++...|..+..|..++|+.+.-||+++
T Consensus 81 -------G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~------evPe--INam~ldP~enSi~~AgGD~~~y~~dlE~ 145 (325)
T KOG0649|consen 81 -------GLVYGWEWNEEEESLATKRLWEVKIPMQVDAV------EVPE--INAMWLDPSENSILFAGGDGVIYQVDLED 145 (325)
T ss_pred -------ceEEEeeehhhhhhccchhhhhhcCccccCcc------cCCc--cceeEeccCCCcEEEecCCeEEEEEEecC
Confidence 578877643221 11111 1121111 1111 12566677234455555699999999999
Q ss_pred ceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEc
Q 005140 350 FTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVD 429 (712)
Q Consensus 350 ~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~ 429 (712)
|+.......|.+.|.++.--.....|.+ |+.|++++||... +.+.+....
T Consensus 146 G~i~r~~rGHtDYvH~vv~R~~~~qils-----G~EDGtvRvWd~k--t~k~v~~ie----------------------- 195 (325)
T KOG0649|consen 146 GRIQREYRGHTDYVHSVVGRNANGQILS-----GAEDGTVRVWDTK--TQKHVSMIE----------------------- 195 (325)
T ss_pred CEEEEEEcCCcceeeeeeecccCcceee-----cCCCccEEEEecc--ccceeEEec-----------------------
Confidence 9998888899999999988444455555 8888888876543 322222111
Q ss_pred ccccccccccccEEEEEEecCCcceeEEEecCC-CCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEE
Q 005140 430 RYTKTKKSTYTGFELFRIKERDIPIEVLELDNK-NDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLT 508 (712)
Q Consensus 430 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h-~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~ 508 (712)
.|+-. -.+..| ...|.+++- +..+++++++. .+.+|.+++... ..+.
T Consensus 196 --------------~yk~~--------~~lRp~~g~wigala~--~edWlvCGgGp----~lslwhLrsse~----t~vf 243 (325)
T KOG0649|consen 196 --------------PYKNP--------NLLRPDWGKWIGALAV--NEDWLVCGGGP----KLSLWHLRSSES----TCVF 243 (325)
T ss_pred --------------cccCh--------hhcCcccCceeEEEec--cCceEEecCCC----ceeEEeccCCCc----eEEE
Confidence 11100 001112 233555544 56677776653 699999987552 2444
Q ss_pred EeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeee-eccccceeeEEECCCCCEEEEEEccceeccccEEEE
Q 005140 509 TLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA-TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIW 587 (712)
Q Consensus 509 ~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~-~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw 587 (712)
.++ .++..+.|-. +.+++++. ...|.-|.+..--... ...+..+++..|+..--.+++.... .+.+.|+
T Consensus 244 pip-a~v~~v~F~~--d~vl~~G~---g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~----s~~~~i~ 313 (325)
T KOG0649|consen 244 PIP-ARVHLVDFVD--DCVLIGGE---GNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAGF----SNKLHIL 313 (325)
T ss_pred ecc-cceeEeeeec--ceEEEecc---ccceeeeeeccEEEEeccCCccceeeecccCCceEEEEeccc----ceeeeee
Confidence 443 3456666643 46667765 5678888877322221 2344556666666554444443331 4555554
No 294
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.10 E-value=4.9e-10 Score=102.80 Aligned_cols=76 Identities=14% Similarity=0.190 Sum_probs=66.3
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
+.+|+|+||+. ...+++|+++|++||+|.. |.|+.|. .++|||||+|.++++|..|+ .|||..|.++
T Consensus 5 g~TV~V~NLS~------~tTE~dLrefFS~~G~I~~--V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~- 71 (243)
T PLN03121 5 GYTAEVTNLSP------KATEKDVYDFFSHCGAIEH--VEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQ- 71 (243)
T ss_pred ceEEEEecCCC------CCCHHHHHHHHHhcCCeEE--EEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCc-
Confidence 46999999997 4459999999999999999 9999985 55689999999999999998 5999999885
Q ss_pred EEEEEeecc
Q 005140 139 IFAVNMFDD 147 (712)
Q Consensus 139 ~l~v~~~~~ 147 (712)
.+.+..+.+
T Consensus 72 ~I~It~~~~ 80 (243)
T PLN03121 72 RVCITRWGQ 80 (243)
T ss_pred eEEEEeCcc
Confidence 677777665
No 295
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.08 E-value=3.4e-10 Score=99.49 Aligned_cols=82 Identities=24% Similarity=0.475 Sum_probs=72.3
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhcc-CeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQI-GVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~-g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
..-.+||+.+|. -..+..+...|.+| |.|+. +.+.+++.||++||||||+|++++.|+-|.+.||+|-|.+
T Consensus 48 ~~g~~~~~~~p~------g~~e~~~~~~~~q~~g~v~r--~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e 119 (214)
T KOG4208|consen 48 IEGVVYVDHIPH------GFFETEILNYFRQFGGTVTR--FRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLME 119 (214)
T ss_pred Cccceeeccccc------chhHHHHhhhhhhcCCeeEE--EEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhh
Confidence 345899999997 55588899999998 78899 9999999999999999999999999999999999999987
Q ss_pred ceEEEEEeeccc
Q 005140 137 AHIFAVNMFDDF 148 (712)
Q Consensus 137 ~~~l~v~~~~~~ 148 (712)
|.|.|..+..-
T Consensus 120 -~lL~c~vmppe 130 (214)
T KOG4208|consen 120 -HLLECHVMPPE 130 (214)
T ss_pred -heeeeEEeCch
Confidence 58888876554
No 296
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=2.8e-10 Score=102.80 Aligned_cols=78 Identities=29% Similarity=0.491 Sum_probs=71.8
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceE
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~ 139 (712)
+.++|.=||. ..+++.||.+|+..|+|.+ |.+.+|+.||.+.||+||.|.+++||++|+..|||..|..+ +
T Consensus 42 TNLIvNYLPQ------~MTqdE~rSLF~SiGeiES--cKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~K-T 112 (360)
T KOG0145|consen 42 TNLIVNYLPQ------NMTQDELRSLFGSIGEIES--CKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNK-T 112 (360)
T ss_pred ceeeeeeccc------ccCHHHHHHHhhcccceee--eeeeeccccccccccceeeecChHHHHHHHhhhcceeeccc-e
Confidence 5899999997 5558999999999999999 99999999999999999999999999999999999999875 8
Q ss_pred EEEEeec
Q 005140 140 FAVNMFD 146 (712)
Q Consensus 140 l~v~~~~ 146 (712)
++|+...
T Consensus 113 IKVSyAR 119 (360)
T KOG0145|consen 113 IKVSYAR 119 (360)
T ss_pred EEEEecc
Confidence 8887643
No 297
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.06 E-value=3.1e-10 Score=97.07 Aligned_cols=79 Identities=27% Similarity=0.412 Sum_probs=67.9
Q ss_pred cCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 005140 56 SGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135 (712)
Q Consensus 56 ~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 135 (712)
...++.|||+|||- +.-+++|.++|.|||.|.+ |.|..-+ ..-+||||+|+++.+|+.||..-||+.++
T Consensus 3 gr~~~~iyvGNLP~------diRekeieDlFyKyg~i~~--ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdyd 71 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPG------DIREKEIEDLFYKYGRIRE--IELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYD 71 (241)
T ss_pred CcccceEEecCCCc------chhhccHHHHHhhhcceEE--EEeccCC---CCCCeeEEEecCccchhhhhhcccccccC
Confidence 34688999999997 6669999999999999999 8776543 35679999999999999999999999999
Q ss_pred CceEEEEEeec
Q 005140 136 RAHIFAVNMFD 146 (712)
Q Consensus 136 ~~~~l~v~~~~ 146 (712)
+. .|.|....
T Consensus 72 g~-rLRVEfpr 81 (241)
T KOG0105|consen 72 GC-RLRVEFPR 81 (241)
T ss_pred cc-eEEEEecc
Confidence 94 88887643
No 298
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=5.5e-10 Score=101.84 Aligned_cols=77 Identities=22% Similarity=0.330 Sum_probs=66.7
Q ss_pred cccCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCc
Q 005140 54 VESGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYK 133 (712)
Q Consensus 54 ~~~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~ 133 (712)
..+.-.|.|||+|++. -..+..||+.|++||+|.+ |.+-+|+ ||+||.|++.|.|.+||..+||..
T Consensus 159 Qssp~NtsVY~G~I~~------~lte~~mr~~Fs~fG~I~E--VRvFk~q------GYaFVrF~tkEaAahAIv~mNnte 224 (321)
T KOG0148|consen 159 QSSPDNTSVYVGNIAS------GLTEDLMRQTFSPFGPIQE--VRVFKDQ------GYAFVRFETKEAAAHAIVQMNNTE 224 (321)
T ss_pred cCCCCCceEEeCCcCc------cccHHHHHHhcccCCcceE--EEEeccc------ceEEEEecchhhHHHHHHHhcCce
Confidence 3355679999999997 2338899999999999999 9998775 899999999999999999999999
Q ss_pred cCCceEEEEEee
Q 005140 134 LDRAHIFAVNMF 145 (712)
Q Consensus 134 ~~~~~~l~v~~~ 145 (712)
+.+ |..+++.=
T Consensus 225 i~G-~~VkCsWG 235 (321)
T KOG0148|consen 225 IGG-QLVRCSWG 235 (321)
T ss_pred eCc-eEEEEecc
Confidence 998 57777663
No 299
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.06 E-value=7e-10 Score=100.23 Aligned_cols=79 Identities=25% Similarity=0.398 Sum_probs=72.3
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+-+|||-||.. +.-|..|+++|++||-|.. +.+.+|..|.+.|||+||.+.+-++|.-||..|||+.++.+
T Consensus 277 ~g~ciFvYNLsp------d~de~~LWQlFgpFGAv~n--VKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~r 348 (360)
T KOG0145|consen 277 GGWCIFVYNLSP------DADESILWQLFGPFGAVTN--VKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 348 (360)
T ss_pred CeeEEEEEecCC------CchHhHHHHHhCcccceee--EEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccce
Confidence 356999999997 5559999999999999999 99999998999999999999999999999999999999885
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
+|.|+..
T Consensus 349 -vLQVsFK 355 (360)
T KOG0145|consen 349 -VLQVSFK 355 (360)
T ss_pred -EEEEEEe
Confidence 8888764
No 300
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.05 E-value=4.2e-10 Score=114.75 Aligned_cols=81 Identities=27% Similarity=0.423 Sum_probs=75.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
..+.|||+|+|. +..++.|..+|+..|.|.. +.+..|++||++|||||++|.+.++|..|++.|||..+.++
T Consensus 17 ~~~~v~vgnip~------~~se~~l~~~~~~~g~v~s--~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr 88 (435)
T KOG0108|consen 17 LSSSVFVGNIPY------EGSEEQLLSIFSGVGPVLS--FRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGR 88 (435)
T ss_pred cccceEecCCCC------cccHHHHHHHHhccCccce--eeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCc
Confidence 338999999998 6679999999999999999 99999999999999999999999999999999999999996
Q ss_pred eEEEEEeecc
Q 005140 138 HIFAVNMFDD 147 (712)
Q Consensus 138 ~~l~v~~~~~ 147 (712)
.|+|+....
T Consensus 89 -~l~v~~~~~ 97 (435)
T KOG0108|consen 89 -KLRVNYASN 97 (435)
T ss_pred -eEEeecccc
Confidence 888887654
No 301
>smart00360 RRM RNA recognition motif.
Probab=99.04 E-value=8.4e-10 Score=84.87 Aligned_cols=70 Identities=36% Similarity=0.584 Sum_probs=61.7
Q ss_pred ECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEEEE
Q 005140 64 VDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAV 142 (712)
Q Consensus 64 v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l~v 142 (712)
|.|||. ...+.+|+++|++||.|.. +.++.++.+++++|||||+|.+.++|.+|++.+++..+.++ .+.|
T Consensus 1 i~~l~~------~~~~~~l~~~f~~~g~v~~--~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~-~~~v 70 (71)
T smart00360 1 VGNLPP------DVTEEELRELFSKFGKIES--VRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGR-PLKV 70 (71)
T ss_pred CCCCCc------ccCHHHHHHHHHhhCCEeE--EEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCc-EEEe
Confidence 578886 4458999999999999999 99999988899999999999999999999999999988774 5443
No 302
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.03 E-value=3.1e-07 Score=88.95 Aligned_cols=237 Identities=17% Similarity=0.152 Sum_probs=150.2
Q ss_pred ceEEEcC-CCcEEEEEecCc--eEEeecccCcceeeeecCCC----eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEE
Q 005140 217 SFVQWSP-LGTYLATVHRQG--AAVWGGANTFNRLMRYAHPQ----VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINI 289 (712)
Q Consensus 217 ~~v~~Sp-dg~~lat~~~~~--i~iw~~~~~~~~~~~~~~~~----v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~i 289 (712)
..++.+| .+..+|++-..| ..+||.. ++.....+..+. --.-.|||||++|++.-.+ -+...|.|-|
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~-~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd-----~~~g~G~IgV 81 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCR-TGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTEND-----YETGRGVIGV 81 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcC-CCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccc-----cCCCcEEEEE
Confidence 3578899 677888888888 5699999 777777665332 2357899999999998776 2334489999
Q ss_pred EEcc-CCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecC-------------------CeEEEEEcCC
Q 005140 290 FDVR-TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGK-------------------NMISVYETES 349 (712)
Q Consensus 290 wd~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d-------------------~~i~iwd~~~ 349 (712)
||.. +-+.+..|..+..... .+.|.| ||+.|+.+.. -++...|..+
T Consensus 82 yd~~~~~~ri~E~~s~GIGPH-------------el~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s 147 (305)
T PF07433_consen 82 YDAARGYRRIGEFPSHGIGPH-------------ELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS 147 (305)
T ss_pred EECcCCcEEEeEecCCCcChh-------------hEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCC
Confidence 9997 5566777776643321 488999 9987776542 1355556677
Q ss_pred ceecccccc----cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEE
Q 005140 350 FTLIDKKSL----KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLA 425 (712)
Q Consensus 350 ~~~~~~~~~----~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~ 425 (712)
|.++.+..+ +.-.+..+++.++|..++-..... +... .-..++
T Consensus 148 G~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg--------------~~~~-------------------~~PLva 194 (305)
T PF07433_consen 148 GALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQG--------------DPGD-------------------APPLVA 194 (305)
T ss_pred CceeeeeecCccccccceeeEEecCCCcEEEEEecCC--------------CCCc-------------------cCCeEE
Confidence 777765433 444588888888876655421110 0000 000111
Q ss_pred EEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCcee
Q 005140 426 VKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVS 505 (712)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~ 505 (712)
....+.. +.++.+.... ...+ .+.+-+++++++|..+++++-.+. .+.+||..++.
T Consensus 195 ~~~~g~~---------~~~~~~p~~~----~~~l---~~Y~gSIa~~~~g~~ia~tsPrGg--~~~~~d~~tg~------ 250 (305)
T PF07433_consen 195 LHRRGGA---------LRLLPAPEEQ----WRRL---NGYIGSIAADRDGRLIAVTSPRGG--RVAVWDAATGR------ 250 (305)
T ss_pred EEcCCCc---------ceeccCChHH----HHhh---CCceEEEEEeCCCCEEEEECCCCC--EEEEEECCCCC------
Confidence 1111110 1122211100 0123 678999999999999998887663 89999987765
Q ss_pred EEEEeCCCceeEEEEccCCCeEEEEe
Q 005140 506 KLTTLKGKQANALFWSPSGRFIVLAG 531 (712)
Q Consensus 506 ~~~~~~~~~v~~l~~spdg~~l~~~~ 531 (712)
.+....-..+..++-.+++ ++++.+
T Consensus 251 ~~~~~~l~D~cGva~~~~~-f~~ssG 275 (305)
T PF07433_consen 251 LLGSVPLPDACGVAPTDDG-FLVSSG 275 (305)
T ss_pred EeeccccCceeeeeecCCc-eEEeCC
Confidence 4554444456777777777 666665
No 303
>smart00362 RRM_2 RNA recognition motif.
Probab=99.03 E-value=1.2e-09 Score=84.37 Aligned_cols=71 Identities=34% Similarity=0.574 Sum_probs=62.4
Q ss_pred EEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEE
Q 005140 61 IIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIF 140 (712)
Q Consensus 61 ~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l 140 (712)
+|+|.|||. .....+|+++|.+||.|.. +.+..++ +.++|+|||+|.+.++|.+|++.++|..+.++ .+
T Consensus 1 ~v~i~~l~~------~~~~~~l~~~~~~~g~v~~--~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~-~i 69 (72)
T smart00362 1 TLFVGNLPP------DVTEEDLKELFSKFGPIES--VKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGR-PL 69 (72)
T ss_pred CEEEcCCCC------cCCHHHHHHHHHhcCCEEE--EEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCE-EE
Confidence 489999997 4448899999999999999 9999887 78999999999999999999999999988774 55
Q ss_pred EE
Q 005140 141 AV 142 (712)
Q Consensus 141 ~v 142 (712)
.|
T Consensus 70 ~v 71 (72)
T smart00362 70 RV 71 (72)
T ss_pred ee
Confidence 44
No 304
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=4.5e-08 Score=101.25 Aligned_cols=272 Identities=15% Similarity=0.222 Sum_probs=175.8
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCce---------------eeeccCCCcccccCCCCCcCC
Q 005140 254 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKV---------------MRDFKGSADEFAVGGTGGVAG 318 (712)
Q Consensus 254 ~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~---------------~~~~~~~~~~~~~~~~~~~~~ 318 (712)
-...|+.|+....|||.|+.+ |.++|..+.+... -.++.+|...+.
T Consensus 15 vkL~c~~WNke~gyIAcgG~d----------GlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~--------- 75 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGAD----------GLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVM--------- 75 (1189)
T ss_pred ceEEEEEEcccCCeEEecccc----------ceeEEEEccccCCcccccccccccccchhhhhccCcceEE---------
Confidence 348899999999999999999 9999998754321 123455555442
Q ss_pred CCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccc--cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEe
Q 005140 319 VSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSL--KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQ 395 (712)
Q Consensus 319 ~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~ 395 (712)
.+.|.. ..+.|.++. +|-|.||-+-.+........ ...-|.+++|..+|..|+. ...|+.+.|-..+
T Consensus 76 ----vvTWNe-~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcI-----vYeDGavIVGsvd 145 (1189)
T KOG2041|consen 76 ----VVTWNE-NNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICI-----VYEDGAVIVGSVD 145 (1189)
T ss_pred ----EEEecc-ccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEE-----EEccCCEEEEeec
Confidence 578988 888888887 99999999887764433211 2234899999999999887 5577777665554
Q ss_pred cCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCC----cceeEEE----ecCCCCceE
Q 005140 396 IPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERD----IPIEVLE----LDNKNDKII 467 (712)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~----~~~~~~~----l~~h~~~v~ 467 (712)
... +-.+.+.......+.|++|.+.++++...+. ..+|+....- .....+. +......|-
T Consensus 146 GNR---IwgKeLkg~~l~hv~ws~D~~~~Lf~~ange---------~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia 213 (1189)
T KOG2041|consen 146 GNR---IWGKELKGQLLAHVLWSEDLEQALFKKANGE---------THLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIA 213 (1189)
T ss_pred cce---ecchhcchheccceeecccHHHHHhhhcCCc---------EEEecccccHHHhhhhceEEeeeeeecCCCcccc
Confidence 432 1111111112224579999887766555433 5566543210 0000011 111122355
Q ss_pred EEEEe--------eCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccC-----
Q 005140 468 AFAWE--------PKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKG----- 534 (712)
Q Consensus 468 ~~~~s--------p~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~----- 534 (712)
.+.|. |+...|+++...| .+.|..-.+... ++-.-.+..+....|+++|..|++++...
T Consensus 214 ~i~w~~g~~~~v~pdrP~lavcy~nG---r~QiMR~eND~~-----Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~ 285 (1189)
T KOG2041|consen 214 EIEWNTGPYQPVPPDRPRLAVCYANG---RMQIMRSENDPE-----PVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEP 285 (1189)
T ss_pred ceeeccCccccCCCCCCEEEEEEcCc---eehhhhhcCCCC-----CeEEecccEeecceecCCCcEEEEccCcccccCc
Confidence 56663 5788999999888 777765443322 33222245688899999999999987632
Q ss_pred -CCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEc
Q 005140 535 -FNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 535 -~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~ 575 (712)
..+.|.+|..- |+.+.+ .....|++++|-..|-.+|.+..
T Consensus 286 ~d~n~v~Fysp~-G~i~gtlkvpg~~It~lsWEg~gLriA~Avd 328 (1189)
T KOG2041|consen 286 TDSNKVHFYSPY-GHIVGTLKVPGSCITGLSWEGTGLRIAIAVD 328 (1189)
T ss_pred cccceEEEeccc-hhheEEEecCCceeeeeEEcCCceEEEEEec
Confidence 22467777654 455544 45578999999999999888875
No 305
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=6.1e-09 Score=104.46 Aligned_cols=115 Identities=12% Similarity=0.202 Sum_probs=82.2
Q ss_pred cCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeecc-CCCcccccCCCCCcCCCCcCeEEecCC
Q 005140 252 AHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFK-GSADEFAVGGTGGVAGVSWPVFRWGGG 329 (712)
Q Consensus 252 ~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~ 329 (712)
+|.+ |.++.|+.+|.+|++|+.| ..+.|||.-..+++..+. +|...+ + +++|-|.
T Consensus 48 GH~GCVN~LeWn~dG~lL~SGSDD----------~r~ivWd~~~~KllhsI~TgHtaNI------------F-svKFvP~ 104 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGELLASGSDD----------TRLIVWDPFEYKLLHSISTGHTANI------------F-SVKFVPY 104 (758)
T ss_pred cccceecceeecCCCCEEeecCCc----------ceEEeecchhcceeeeeecccccce------------e-EEeeecc
Confidence 3555 9999999999999999999 899999998888777764 454444 2 5788875
Q ss_pred -CCCEEEEec-CCeEEEEEcCCce----------ecccccccccCeeeEEECCCCCe-EEEEeecCCCCCCCeEEEEE
Q 005140 330 -KDKYFAKLG-KNMISVYETESFT----------LIDKKSLKVENVMDFSWSPTDPI-ISLFVPELGGGNQPARVSLV 394 (712)
Q Consensus 330 -dg~~la~~~-d~~i~iwd~~~~~----------~~~~~~~~~~~v~~~~~sp~~~~-la~~~~~~~~~~~~~~i~~~ 394 (712)
++..++++. |..|++||+...+ .+.-...|...|..++-.|++.. +.+ ++.|+.++-+.+
T Consensus 105 tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfws-----asEDGtirQyDi 177 (758)
T KOG1310|consen 105 TNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWS-----ASEDGTIRQYDI 177 (758)
T ss_pred CCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEE-----ecCCcceeeecc
Confidence 345666766 9999999998421 11222346667888888888844 444 566776664433
No 306
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.01 E-value=1.4e-09 Score=117.47 Aligned_cols=80 Identities=31% Similarity=0.459 Sum_probs=72.8
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
..+|||+|||. ...+.+|+++|++||.|.. |.++.|+.+|+++|||||+|.+.++|.+|+..|||+.+.++
T Consensus 186 ~~~l~v~nl~~------~~te~~l~~~f~~~G~i~~--v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~- 256 (457)
T TIGR01622 186 FLKLYVGNLHF------NITEQELRQIFEPFGDIED--VQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGR- 256 (457)
T ss_pred CCEEEEcCCCC------CCCHHHHHHHHHhcCCeEE--EEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCE-
Confidence 57999999996 4448899999999999999 99999999999999999999999999999999999999884
Q ss_pred EEEEEeecc
Q 005140 139 IFAVNMFDD 147 (712)
Q Consensus 139 ~l~v~~~~~ 147 (712)
.+.|....+
T Consensus 257 ~i~v~~a~~ 265 (457)
T TIGR01622 257 PIKVGYAQD 265 (457)
T ss_pred EEEEEEccC
Confidence 888887653
No 307
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.00 E-value=2.7e-08 Score=109.22 Aligned_cols=259 Identities=9% Similarity=0.116 Sum_probs=156.3
Q ss_pred EEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCcee-----cccccc--ccc
Q 005140 290 FDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTL-----IDKKSL--KVE 361 (712)
Q Consensus 290 wd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~-----~~~~~~--~~~ 361 (712)
|+. .|..+..+..|...+. .++.++..+.+|++++ ||+|++|++..... -..... ...
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~-------------k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~s 1099 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVI-------------KLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGS 1099 (1431)
T ss_pred CCc-cceEeehhhhcccccc-------------ceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCC
Confidence 664 7888888877766552 3455551558999999 99999999863211 111112 233
Q ss_pred CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc-----ceeeeeee-eecceeE-EEC-cCCC-EEEEEEcccc
Q 005140 362 NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE-----ELRQKNLF-SVSDCKM-YWQ-SSGD-YLAVKVDRYT 432 (712)
Q Consensus 362 ~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~-~~~~~~~-~~s-~~g~-~l~~~~~~~~ 432 (712)
.+.++...+.+..+|+ ++.||.+++...+..... ..+..+.. ....++| ++. ..+. .|++++.-..
T Consensus 1100 r~~~vt~~~~~~~~Av-----~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~ 1174 (1431)
T KOG1240|consen 1100 RVEKVTMCGNGDQFAV-----STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSR 1174 (1431)
T ss_pred ceEEEEeccCCCeEEE-----EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccc
Confidence 5888999999999999 778888887776652111 11111111 1122222 121 2233 4444444333
Q ss_pred cccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-
Q 005140 433 KTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK- 511 (712)
Q Consensus 433 ~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~- 511 (712)
+..|+++..... ..+......+.|++++.+|.+.++++|...| .+.+||++-+. ++.+..
T Consensus 1175 ---------iv~~D~r~~~~~-w~lk~~~~hG~vTSi~idp~~~WlviGts~G---~l~lWDLRF~~------~i~sw~~ 1235 (1431)
T KOG1240|consen 1175 ---------IVSWDTRMRHDA-WRLKNQLRHGLVTSIVIDPWCNWLVIGTSRG---QLVLWDLRFRV------PILSWEH 1235 (1431)
T ss_pred ---------eEEecchhhhhH-HhhhcCccccceeEEEecCCceEEEEecCCc---eEEEEEeecCc------eeecccC
Confidence 667776542211 1122333478999999999999999999988 89999997544 333332
Q ss_pred -C-CceeEEEEcc---CCCeEEEEeccCCCceEEEEECCcceeeee---c-c-----------------ccceeeEEECC
Q 005140 512 -G-KQANALFWSP---SGRFIVLAGLKGFNGQLEFYNVDELETMAT---A-E-----------------HFMATDVEWDP 565 (712)
Q Consensus 512 -~-~~v~~l~~sp---dg~~l~~~~~~~~dg~v~iwd~~~~~~~~~---~-~-----------------~~~v~~~~~sp 565 (712)
. .+++.+...| .....++++.. ..+.|.+|++.++..-.. . . .-......+.-
T Consensus 1236 P~~~~i~~v~~~~~~~~~S~~vs~~~~-~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~ 1314 (1431)
T KOG1240|consen 1236 PARAPIRHVWLCPTYPQESVSVSAGSS-SNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCE 1314 (1431)
T ss_pred cccCCcceEEeeccCCCCceEEEeccc-CCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeeccc
Confidence 1 2456665555 34566666542 278999999987643221 1 0 00111233334
Q ss_pred CCCEEEEEEccceeccccEEEEEecCc
Q 005140 566 TGRYVATAVTSVHEMENGFNIWSFNGK 592 (712)
Q Consensus 566 dg~~l~t~s~~~~~~d~~v~iw~~~g~ 592 (712)
-+.++.+|++ |..|+.||....
T Consensus 1315 ~~~~~ltggs-----d~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1315 KNGFLLTGGS-----DMKIRKWDPTRP 1336 (1431)
T ss_pred CCceeeecCC-----ccceeeccCCCc
Confidence 4567888888 999999998743
No 308
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.00 E-value=3e-10 Score=110.33 Aligned_cols=83 Identities=27% Similarity=0.377 Sum_probs=70.9
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCC-ccCCc
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGY-KLDRA 137 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~-~~~~~ 137 (712)
+.++||+-|++ ...|.++++||++||.|++ |+|.+|+ .|.+||+|||.|++++-|..||+.|||. .+.|+
T Consensus 124 e~KLFvg~lsK------~~te~evr~iFs~fG~Ied--~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGc 194 (510)
T KOG0144|consen 124 ERKLFVGMLSK------QCTENEVREIFSRFGHIED--CYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGC 194 (510)
T ss_pred chhhhhhhccc------cccHHHHHHHHHhhCccch--hhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccC
Confidence 56899999997 5569999999999999999 9999998 8999999999999999999999999995 55666
Q ss_pred eEEEEEeeccccc
Q 005140 138 HIFAVNMFDDFDK 150 (712)
Q Consensus 138 ~~l~v~~~~~~~~ 150 (712)
....|-+|.|-+|
T Consensus 195 s~PLVVkFADtqk 207 (510)
T KOG0144|consen 195 SQPLVVKFADTQK 207 (510)
T ss_pred CCceEEEecccCC
Confidence 5555555555333
No 309
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.98 E-value=1.4e-09 Score=119.42 Aligned_cols=78 Identities=27% Similarity=0.361 Sum_probs=70.8
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
..+|||+|||. ...+..|+++|++||.|.. +.++.|..+|+++|||||+|.+.++|..|+..|||..++++
T Consensus 295 ~~~l~v~nlp~------~~~~~~l~~~f~~~G~i~~--~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~- 365 (509)
T TIGR01642 295 KDRIYIGNLPL------YLGEDQIKELLESFGDLKA--FNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDN- 365 (509)
T ss_pred CCEEEEeCCCC------CCCHHHHHHHHHhcCCeeE--EEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCe-
Confidence 47999999997 4448899999999999999 99999999999999999999999999999999999999885
Q ss_pred EEEEEee
Q 005140 139 IFAVNMF 145 (712)
Q Consensus 139 ~l~v~~~ 145 (712)
.+.|...
T Consensus 366 ~l~v~~a 372 (509)
T TIGR01642 366 KLHVQRA 372 (509)
T ss_pred EEEEEEC
Confidence 6777654
No 310
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.97 E-value=1.6e-09 Score=120.03 Aligned_cols=75 Identities=23% Similarity=0.370 Sum_probs=68.5
Q ss_pred EEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEE
Q 005140 61 IIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIF 140 (712)
Q Consensus 61 ~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l 140 (712)
.|||+|||. +..++.|+++|++||.|.+ |.|.+|..|++++|||||+|.+.++|.+|++.+|+..+.++ .+
T Consensus 2 sl~VgnLp~------~vte~~L~~~F~~~G~v~~--v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk-~i 72 (562)
T TIGR01628 2 SLYVGDLDP------DVTEAKLYDLFKPFGPVLS--VRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGK-PI 72 (562)
T ss_pred eEEEeCCCC------CCCHHHHHHHHHhcCCEEE--EEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe-eE
Confidence 699999997 5559999999999999999 99999999999999999999999999999999999989885 66
Q ss_pred EEEe
Q 005140 141 AVNM 144 (712)
Q Consensus 141 ~v~~ 144 (712)
++..
T Consensus 73 ~i~~ 76 (562)
T TIGR01628 73 RIMW 76 (562)
T ss_pred Eeec
Confidence 6644
No 311
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.96 E-value=3.1e-09 Score=76.94 Aligned_cols=55 Identities=24% Similarity=0.484 Sum_probs=47.5
Q ss_pred HHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEEEEEe
Q 005140 82 IRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 144 (712)
Q Consensus 82 l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l~v~~ 144 (712)
|+++|++||.|.+ +.+..+. +|+|||+|.+.++|.+|++.|||..+.++ +++|..
T Consensus 1 L~~~f~~fG~V~~--i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~-~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKK--IKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGR-PLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEE--EEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTE-EEEEEE
T ss_pred ChHHhCCcccEEE--EEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCc-EEEEEE
Confidence 6899999999999 8886553 69999999999999999999999999886 777753
No 312
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.95 E-value=1.5e-07 Score=98.09 Aligned_cols=211 Identities=14% Similarity=0.178 Sum_probs=135.3
Q ss_pred cEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec---CC--eEEEEEcCCceeccccccc
Q 005140 285 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG---KN--MISVYETESFTLIDKKSLK 359 (712)
Q Consensus 285 ~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~---d~--~i~iwd~~~~~~~~~~~~~ 359 (712)
..+.+-|.. |...+.+........ ..+|+| +++.++... .+ .+.++++.++....... .
T Consensus 173 ~~l~~~D~d-g~~~~~l~~~~~~~~-------------~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~ 236 (425)
T COG0823 173 YELALGDYD-GYNQQKLTDSGSLIL-------------TPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-F 236 (425)
T ss_pred ceEEEEccC-CcceeEecccCccee-------------ccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeec-c
Confidence 456666643 555555544433321 358999 999877765 33 58888988765432221 1
Q ss_pred ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccccc
Q 005140 360 VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTY 439 (712)
Q Consensus 360 ~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~ 439 (712)
...-...+|||||+.|++. ...++...||++++......+ .+-.........|+|+|+++++.+++...
T Consensus 237 ~g~~~~P~fspDG~~l~f~----~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~------ 305 (425)
T COG0823 237 NGNNGAPAFSPDGSKLAFS----SSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGR------ 305 (425)
T ss_pred CCccCCccCCCCCCEEEEE----ECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCC------
Confidence 1223456899999999985 346788899999998776333 22233333467899999999999887542
Q ss_pred ccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC-ceeEE
Q 005140 440 TGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK-QANAL 518 (712)
Q Consensus 440 ~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-~v~~l 518 (712)
..+|.++..+.....++... +.-....|||||++|++.+..++.-.|.++++.++.. +..+... .....
T Consensus 306 --p~I~~~~~~g~~~~riT~~~--~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~------~~~lt~~~~~e~p 375 (425)
T COG0823 306 --PQIYLYDLEGSQVTRLTFSG--GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK------IRILTSTYLNESP 375 (425)
T ss_pred --cceEEECCCCCceeEeeccC--CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc------EEEccccccCCCC
Confidence 36777766665555555532 2222789999999999998543222466666654331 3333322 34568
Q ss_pred EEccCCCeEEEEec
Q 005140 519 FWSPSGRFIVLAGL 532 (712)
Q Consensus 519 ~~spdg~~l~~~~~ 532 (712)
.|.|+|+.+...+.
T Consensus 376 s~~~ng~~i~~~s~ 389 (425)
T COG0823 376 SWAPNGRMIMFSSG 389 (425)
T ss_pred CcCCCCceEEEecc
Confidence 89999999888764
No 313
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=8.2e-08 Score=92.92 Aligned_cols=112 Identities=12% Similarity=0.203 Sum_probs=87.2
Q ss_pred cEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEE-eC--CCceeE
Q 005140 441 GFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTT-LK--GKQANA 517 (712)
Q Consensus 441 ~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~-~~--~~~v~~ 517 (712)
.+++|+.+....|+..+.+. ..+++++...|+|+.++++..-+ .+..||++++. .+.. +. .+.+.+
T Consensus 227 qvR~YDt~~qRRPV~~fd~~--E~~is~~~l~p~gn~Iy~gn~~g---~l~~FD~r~~k------l~g~~~kg~tGsirs 295 (412)
T KOG3881|consen 227 QVRLYDTRHQRRPVAQFDFL--ENPISSTGLTPSGNFIYTGNTKG---QLAKFDLRGGK------LLGCGLKGITGSIRS 295 (412)
T ss_pred eEEEecCcccCcceeEeccc--cCcceeeeecCCCcEEEEecccc---hhheecccCce------eeccccCCccCCcce
Confidence 37888888777777666653 67899999999999999998888 89999998765 3333 33 347899
Q ss_pred EEEccCCCeEEEEeccCCCceEEEEECCcceeeee-ccccceeeEEECCC
Q 005140 518 LFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-AEHFMATDVEWDPT 566 (712)
Q Consensus 518 l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~-~~~~~v~~~~~spd 566 (712)
+..+|.+++|++++. |..|+|+|+++.+++.. .-...++++-+.++
T Consensus 296 ih~hp~~~~las~GL---DRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 296 IHCHPTHPVLASCGL---DRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred EEEcCCCceEEeecc---ceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 999999999999999 99999999998777654 22345556555543
No 314
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.94 E-value=9.3e-10 Score=110.86 Aligned_cols=77 Identities=29% Similarity=0.516 Sum_probs=70.8
Q ss_pred EEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEEE
Q 005140 62 IVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFA 141 (712)
Q Consensus 62 ~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l~ 141 (712)
+||+||-. ...+..|+.+|++||.|.. |.+++|.+||.+|||+||+|.+.++|.+|+++|||+.|.|+ .++
T Consensus 281 l~vgnLHf------Nite~~lr~ifepfg~Ie~--v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr-~ik 351 (549)
T KOG0147|consen 281 LYVGNLHF------NITEDMLRGIFEPFGKIEN--VQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGR-LIK 351 (549)
T ss_pred hhhccccc------CchHHHHhhhccCccccee--eeeccccccccccCcceEEEecHHHHHHHHHHhccceecCc-eEE
Confidence 89999997 4558899999999999999 99999999999999999999999999999999999999996 777
Q ss_pred EEeecc
Q 005140 142 VNMFDD 147 (712)
Q Consensus 142 v~~~~~ 147 (712)
|....+
T Consensus 352 V~~v~~ 357 (549)
T KOG0147|consen 352 VSVVTE 357 (549)
T ss_pred EEEeee
Confidence 877554
No 315
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.93 E-value=2.9e-09 Score=117.90 Aligned_cols=81 Identities=23% Similarity=0.330 Sum_probs=71.7
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
.-++.|||+|||. ...++.|+++|++||.|++ +.++.|. +|+++|||||+|.+.++|.+|+..|||..+++
T Consensus 283 ~~~~~l~V~nl~~------~~~~~~L~~~F~~~G~i~~--~~i~~d~-~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~g 353 (562)
T TIGR01628 283 AQGVNLYVKNLDD------TVTDEKLRELFSECGEITS--AKVMLDE-KGVSRGFGFVCFSNPEEANRAVTEMHGRMLGG 353 (562)
T ss_pred cCCCEEEEeCCCC------ccCHHHHHHHHHhcCCeEE--EEEEECC-CCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCC
Confidence 3567899999997 4448899999999999999 9999995 99999999999999999999999999999988
Q ss_pred ceEEEEEeecc
Q 005140 137 AHIFAVNMFDD 147 (712)
Q Consensus 137 ~~~l~v~~~~~ 147 (712)
+ .+.|.....
T Consensus 354 k-~l~V~~a~~ 363 (562)
T TIGR01628 354 K-PLYVALAQR 363 (562)
T ss_pred c-eeEEEeccC
Confidence 6 777776543
No 316
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.93 E-value=2.5e-09 Score=115.58 Aligned_cols=79 Identities=16% Similarity=0.228 Sum_probs=69.7
Q ss_pred cCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 005140 56 SGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135 (712)
Q Consensus 56 ~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 135 (712)
..-..+|||+|||. ...+.+|+++|++||.|.. |.|+.|+.+|+++|||||+|.+.++|.+|+. |||..+.
T Consensus 86 ~~~~~~l~V~nlp~------~~~~~~l~~~F~~~G~v~~--v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~ 156 (457)
T TIGR01622 86 ERDDRTVFVLQLAL------KARERDLYEFFSKVGKVRD--VQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLL 156 (457)
T ss_pred ccCCcEEEEeCCCC------CCCHHHHHHHHHhcCCeeE--EEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEEC
Confidence 33568999999997 5558899999999999999 9999999999999999999999999999996 8999998
Q ss_pred CceEEEEEe
Q 005140 136 RAHIFAVNM 144 (712)
Q Consensus 136 ~~~~l~v~~ 144 (712)
++ .+.+..
T Consensus 157 g~-~i~v~~ 164 (457)
T TIGR01622 157 GR-PIIVQS 164 (457)
T ss_pred Ce-eeEEee
Confidence 85 665543
No 317
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.92 E-value=5.6e-09 Score=104.66 Aligned_cols=85 Identities=25% Similarity=0.376 Sum_probs=73.9
Q ss_pred cccCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHh----
Q 005140 54 VESGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKT---- 129 (712)
Q Consensus 54 ~~~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~---- 129 (712)
.+.+++.+|||.|||+ +..++.|...|++||+|.. +.+.+|+.||.++|-|||.|.++.+|.+||...
T Consensus 287 en~~~~~tVFvRNL~f------D~tEEel~~~fskFG~v~y--a~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~ 358 (678)
T KOG0127|consen 287 ENITEGKTVFVRNLPF------DTTEEELKEHFSKFGEVKY--AIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPAS 358 (678)
T ss_pred ccccccceEEEecCCc------cccHHHHHHHHHhhcccee--EEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccC
Confidence 3456889999999998 7779999999999999999 999999999999999999999999999999976
Q ss_pred -CC-CccCCceEEEEEeecc
Q 005140 130 -NG-YKLDRAHIFAVNMFDD 147 (712)
Q Consensus 130 -~~-~~~~~~~~l~v~~~~~ 147 (712)
.| +.|+|+ .|+|...-.
T Consensus 359 e~g~~ll~GR-~Lkv~~Av~ 377 (678)
T KOG0127|consen 359 EDGSVLLDGR-LLKVTLAVT 377 (678)
T ss_pred CCceEEEecc-EEeeeeccc
Confidence 34 667775 777776433
No 318
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=2.2e-06 Score=90.10 Aligned_cols=376 Identities=14% Similarity=0.165 Sum_probs=206.2
Q ss_pred EecCCCCCCCcccccCCCcccceEEEcCC------C------cEEEEEecCc-eEEeecccCcceeeeecCCC--eeEEE
Q 005140 196 LWNDARHLKPEPVYKRSYWTESFVQWSPL------G------TYLATVHRQG-AAVWGGANTFNRLMRYAHPQ--VKLID 260 (712)
Q Consensus 196 ~w~~~~~~~~~~~~~~~~~~v~~v~~Spd------g------~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~--v~~i~ 260 (712)
+-+. ...+.+..+..|+..|+.+.|+|- + -+||++...| |+|||.. ....+..+.|.. +..++
T Consensus 39 VVDs-~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~-~~s~~~~l~~~~~~~qdl~ 116 (1062)
T KOG1912|consen 39 VVDS-RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFV-LASVINWLSHSNDSVQDLC 116 (1062)
T ss_pred EEeh-hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEeh-hhhhhhhhcCCCcchhhee
Confidence 4444 467788889999999999999883 2 2577777777 9999998 777777776553 88888
Q ss_pred ecC---CC-CEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEE
Q 005140 261 FSP---GE-KYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAK 336 (712)
Q Consensus 261 ~Sp---dg-~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~ 336 (712)
|-| +. ..|+.-... ..|.+|+..+|..+........... ++.+.|-|.+.++.
T Consensus 117 W~~~rd~Srd~LlaIh~s----------s~lvLwntdtG~k~Wk~~ys~~iLs-------------~f~~DPfd~rh~~~ 173 (1062)
T KOG1912|consen 117 WVPARDDSRDVLLAIHGS----------STLVLWNTDTGEKFWKYDYSHEILS-------------CFRVDPFDSRHFCV 173 (1062)
T ss_pred eeeccCcchheeEEecCC----------cEEEEEEccCCceeeccccCCccee-------------eeeeCCCCcceEEE
Confidence 865 34 355555555 6899999999998887766544431 46666533444444
Q ss_pred ec-CCeEEEEEcCC-------ceeccccccccc-----------------C--------eeeEEECCCCCeEEEEeecCC
Q 005140 337 LG-KNMISVYETES-------FTLIDKKSLKVE-----------------N--------VMDFSWSPTDPIISLFVPELG 383 (712)
Q Consensus 337 ~~-d~~i~iwd~~~-------~~~~~~~~~~~~-----------------~--------v~~~~~sp~~~~la~~~~~~~ 383 (712)
.+ .|.+.+-+.-. ++.....+-|.+ + ...++|+|.-+.+++..
T Consensus 174 l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~---- 249 (1062)
T KOG1912|consen 174 LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT---- 249 (1062)
T ss_pred EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEE----
Confidence 44 55555544321 111100000000 0 12467788744443321
Q ss_pred CCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCC--EEEEEEcccccccc--------------cc----c----
Q 005140 384 GGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGD--YLAVKVDRYTKTKK--------------ST----Y---- 439 (712)
Q Consensus 384 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~--~l~~~~~~~~~~~~--------------~~----~---- 439 (712)
-+-.+.++++.-...+....+.....--+.|-|+++ .|++...++..+.+ .. .
T Consensus 250 ---~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~ 326 (1062)
T KOG1912|consen 250 ---FPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVH 326 (1062)
T ss_pred ---eccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceE
Confidence 112355666554444443333322222234444443 33333322221000 00 0
Q ss_pred -----------------------------ccEEEEEEecCCccee----E---------------------EEe---cCC
Q 005140 440 -----------------------------TGFELFRIKERDIPIE----V---------------------LEL---DNK 462 (712)
Q Consensus 440 -----------------------------~~~~l~~l~~~~~~~~----~---------------------~~l---~~h 462 (712)
+...+|.+.....+.. . +.+ .+|
T Consensus 327 ~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h 406 (1062)
T KOG1912|consen 327 VVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSH 406 (1062)
T ss_pred EEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCC
Confidence 0111222221000000 0 000 012
Q ss_pred CCceEEEEEe-----------eCC-------CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCC
Q 005140 463 NDKIIAFAWE-----------PKG-------HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSG 524 (712)
Q Consensus 463 ~~~v~~~~~s-----------p~g-------~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg 524 (712)
....++.... |-| ..+|+|...| +|.++|+.++... .-...+...|.++.|-...
T Consensus 407 ~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sG---TV~vvdvst~~v~----~~fsvht~~VkgleW~g~s 479 (1062)
T KOG1912|consen 407 SSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSG---TVDVVDVSTNAVA----ASFSVHTSLVKGLEWLGNS 479 (1062)
T ss_pred CCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCc---eEEEEEecchhhh----hhhcccccceeeeeeccce
Confidence 2222222111 111 2566677777 8999998765421 1112233357888888777
Q ss_pred CeEEEEeccC------CCceEEEEECCcceeee-----eccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCce
Q 005140 525 RFIVLAGLKG------FNGQLEFYNVDELETMA-----TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKL 593 (712)
Q Consensus 525 ~~l~~~~~~~------~dg~v~iwd~~~~~~~~-----~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~ 593 (712)
+++-.+.... .-+.+.+-|+++|.-.. .....+|..+..|..|+||+..-. +.-+-||++.+..
T Consensus 480 slvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr-----~~plEiwd~kt~~ 554 (1062)
T KOG1912|consen 480 SLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFR-----REPLEIWDLKTLR 554 (1062)
T ss_pred eEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEec-----ccchHHHhhccch
Confidence 6655443211 13567788888765433 345578999999999999999999 8999999997653
Q ss_pred eeee---cccceeeeEEe-cCCCCCC
Q 005140 594 LYRT---LKDHFFQFLWR-PRPPSFL 615 (712)
Q Consensus 594 ~~~~---~~~~i~~~~w~-p~~~~l~ 615 (712)
+... ...-|+.+.|+ |.-+.+-
T Consensus 555 ~lr~mS~a~P~it~leWsl~~~~si~ 580 (1062)
T KOG1912|consen 555 MLRLMSLALPLITVLEWSLPKHPSIK 580 (1062)
T ss_pred HHHHHhhcCCcEEEEeecccCCCCcc
Confidence 3332 22458999999 5544443
No 319
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=1.2e-08 Score=101.06 Aligned_cols=291 Identities=13% Similarity=0.143 Sum_probs=179.1
Q ss_pred eeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccc-ccccccCeeeEEECCC--C
Q 005140 297 VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDK-KSLKVENVMDFSWSPT--D 372 (712)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~sp~--~ 372 (712)
+...+..|.+.+. .+.|.. .|..|++++ |..|.+||...+..... ...|...|-...|-|. .
T Consensus 134 l~~kL~~H~GcVn-------------tV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d 199 (559)
T KOG1334|consen 134 LQKKLNKHKGCVN-------------TVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGD 199 (559)
T ss_pred hhhcccCCCCccc-------------eeeecc-cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCC
Confidence 3455677777653 588999 999999999 89999999887664432 3456666666667664 4
Q ss_pred CeEEEEeecCCCCCCCeEEEEEecCCccc-eeeeeeeeecceeEEECcCCCE-EEEEEcccccccccccccEEEEEEecC
Q 005140 373 PIISLFVPELGGGNQPARVSLVQIPSKEE-LRQKNLFSVSDCKMYWQSSGDY-LAVKVDRYTKTKKSTYTGFELFRIKER 450 (712)
Q Consensus 373 ~~la~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~g~~-l~~~~~~~~~~~~~~~~~~~l~~l~~~ 450 (712)
..|+. ++.++.+++.......... ......+......++.-|+..+ |.+++.+.. +.-++++..
T Consensus 200 ~ti~~-----~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~---------v~~~Dlr~~ 265 (559)
T KOG1334|consen 200 RTIVT-----SSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAV---------VFHIDLRQD 265 (559)
T ss_pred cCcee-----ccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccc---------eeeeeeccC
Confidence 66776 7788888876655443221 2222223344444455555443 333333332 223333322
Q ss_pred CcceeEEE-ecCCCC---ceEEEEEeeCC-CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--------CCceeE
Q 005140 451 DIPIEVLE-LDNKND---KIIAFAWEPKG-HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--------GKQANA 517 (712)
Q Consensus 451 ~~~~~~~~-l~~h~~---~v~~~~~sp~g-~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--------~~~v~~ 517 (712)
.|...+. -..+.. ...+++..|.. ..||+++.|. -+++||.+.-........+..+. .-.|++
T Consensus 266 -~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dq---f~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITg 341 (559)
T KOG1334|consen 266 -VPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQ---FARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITG 341 (559)
T ss_pred -CccceeeeeccCCccceeeeeEecCCCCccccccCChhh---hhhhhcccchhhccccchhhhcCCccccccCccccee
Confidence 2222222 112222 45678888855 4888888887 88999987543321122222221 114899
Q ss_pred EEEccCCCeEEEEeccCCCceEEEEECC--cc-------------eeeeeccc--cceeeEE-ECCCCCEEEEEEcccee
Q 005140 518 LFWSPSGRFIVLAGLKGFNGQLEFYNVD--EL-------------ETMATAEH--FMATDVE-WDPTGRYVATAVTSVHE 579 (712)
Q Consensus 518 l~~spdg~~l~~~~~~~~dg~v~iwd~~--~~-------------~~~~~~~~--~~v~~~~-~spdg~~l~t~s~~~~~ 579 (712)
++||.+|.-|+++-. |-.|++|.-. .| +.+.++|. ..|-.+- |-|...|+++|+.
T Consensus 342 l~Ysh~~sElLaSYn---De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSD---- 414 (559)
T KOG1334|consen 342 LVYSHDGSELLASYN---DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSD---- 414 (559)
T ss_pred EEecCCccceeeeec---ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCc----
Confidence 999977766665555 8889999543 12 11223444 2344554 6789999999998
Q ss_pred ccccEEEEEecCceeeee---cccceeeeEEecCCCCCCChhhHHHHHHHH
Q 005140 580 MENGFNIWSFNGKLLYRT---LKDHFFQFLWRPRPPSFLTPEKEEEIAKNL 627 (712)
Q Consensus 580 ~d~~v~iw~~~g~~~~~~---~~~~i~~~~w~p~~~~l~s~~~d~~i~~~~ 627 (712)
=|.|+||+-.+..+... ...-|+++.=+|.-+.|+|++-|..||.|-
T Consensus 415 -CGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 415 -CGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWT 464 (559)
T ss_pred -cceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeec
Confidence 79999999875433322 223688888888889999998888877554
No 320
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.89 E-value=1.8e-07 Score=97.66 Aligned_cols=225 Identities=18% Similarity=0.313 Sum_probs=139.8
Q ss_pred CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccccccc
Q 005140 362 NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTG 441 (712)
Q Consensus 362 ~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~ 441 (712)
.+..-.|+|++..++++.-.. .+..+++++++...+.....+ +........|+|+|+.|++...+.. .
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~---~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg--------~ 261 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFEL---GGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDG--------S 261 (425)
T ss_pred ceeccccCcCCCceEEEEEec---CCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCC--------C
Confidence 466778999999988754322 222678888887765444333 3334445689999999999877642 2
Q ss_pred EEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEc
Q 005140 442 FELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWS 521 (712)
Q Consensus 442 ~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~s 521 (712)
..||.++..+..... +....+.-..-.|+|||+++++.+..++.+.|.+++++.... ...+.....-....||
T Consensus 262 ~~iy~~dl~~~~~~~--Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-----~riT~~~~~~~~p~~S 334 (425)
T COG0823 262 PDIYLMDLDGKNLPR--LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-----TRLTFSGGGNSNPVWS 334 (425)
T ss_pred ccEEEEcCCCCccee--cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-----eEeeccCCCCcCccCC
Confidence 455555544433222 333344444789999999999999988777888888876542 2223333333488999
Q ss_pred cCCCeEEEEeccCCCce--EEEEECCcceeee-eccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCceeeeec
Q 005140 522 PSGRFIVLAGLKGFNGQ--LEFYNVDELETMA-TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTL 598 (712)
Q Consensus 522 pdg~~l~~~~~~~~dg~--v~iwd~~~~~~~~-~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~~ 598 (712)
|||++|++.+.. +|. |.+.++.++..+. ...........|.|+|+.+...+... .+..+..-+..|+.....+
T Consensus 335 pdG~~i~~~~~~--~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~--~~~~l~~~s~~g~~~~~~~ 410 (425)
T COG0823 335 PDGDKIVFESSS--GGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQG--GGSVLSLVSLDGRVSRPLP 410 (425)
T ss_pred CCCCEEEEEecc--CCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccCC--CCceEEEeeccceeEEEEe
Confidence 999999998741 344 6667766554222 23334445789999999998888730 0122222233454443332
Q ss_pred c--cceeeeEEec
Q 005140 599 K--DHFFQFLWRP 609 (712)
Q Consensus 599 ~--~~i~~~~w~p 609 (712)
. ..+...+|+|
T Consensus 411 ~~~~~~~~p~w~~ 423 (425)
T COG0823 411 LADGDVRVPAWSP 423 (425)
T ss_pred ccCcceecccccC
Confidence 2 3455555655
No 321
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.89 E-value=1.1e-08 Score=79.26 Aligned_cols=72 Identities=32% Similarity=0.544 Sum_probs=62.9
Q ss_pred EEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEE
Q 005140 61 IIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIF 140 (712)
Q Consensus 61 ~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l 140 (712)
.|+|.|||. ...+..|+++|+.+|.|.. +.++.++.+ +++|+|||+|.+.++|..|++.+++..+.++ .+
T Consensus 1 ~i~i~~l~~------~~~~~~i~~~~~~~g~i~~--~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~-~~ 70 (74)
T cd00590 1 TLFVGNLPP------DVTEEDLRELFSKFGKVES--VRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGR-PL 70 (74)
T ss_pred CEEEeCCCC------ccCHHHHHHHHHhcCCEEE--EEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCe-EE
Confidence 379999997 3448899999999999999 999998844 8899999999999999999999999988775 55
Q ss_pred EE
Q 005140 141 AV 142 (712)
Q Consensus 141 ~v 142 (712)
.|
T Consensus 71 ~v 72 (74)
T cd00590 71 RV 72 (74)
T ss_pred EE
Confidence 54
No 322
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.86 E-value=6.4e-09 Score=101.83 Aligned_cols=73 Identities=27% Similarity=0.505 Sum_probs=64.2
Q ss_pred EEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEE
Q 005140 61 IIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIF 140 (712)
Q Consensus 61 ~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l 140 (712)
+|||.|||. ..+++.|+++|++||.|.. |..|+| ||||-|.++++|.+|++.+||+.|++. .+
T Consensus 261 vLYVRNL~~------~tTeE~lk~~F~~~G~veR--Vkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~-~i 323 (506)
T KOG0117|consen 261 VLYVRNLME------STTEETLKKLFNEFGKVER--VKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGS-PI 323 (506)
T ss_pred eeeeeccch------hhhHHHHHHHHHhccceEE--eecccc--------eeEEeecchHHHHHHHHHhcCceecCc-eE
Confidence 899999998 5568999999999999999 877755 999999999999999999999999994 88
Q ss_pred EEEeeccccc
Q 005140 141 AVNMFDDFDK 150 (712)
Q Consensus 141 ~v~~~~~~~~ 150 (712)
-|...+..++
T Consensus 324 EvtLAKP~~k 333 (506)
T KOG0117|consen 324 EVTLAKPVDK 333 (506)
T ss_pred EEEecCChhh
Confidence 8777665443
No 323
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.86 E-value=4.6e-07 Score=98.45 Aligned_cols=180 Identities=12% Similarity=0.156 Sum_probs=132.2
Q ss_pred eEEEEECCeeEEEecCCCCCCCcccccCCC----cccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCCC-ee
Q 005140 184 QFVIRSGTDTEVLWNDARHLKPEPVYKRSY----WTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQ-VK 257 (712)
Q Consensus 184 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~----~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~-v~ 257 (712)
+.++...+..+.+|+. .........+... .++.-+.+|++.=++++|+--+ +++|.............|.+ +.
T Consensus 101 ~i~l~~~~ns~~i~d~-~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF 179 (967)
T KOG0974|consen 101 KIALVTSRNSLLIRDS-KNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIF 179 (967)
T ss_pred eEEEEEcCceEEEEec-ccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceE
Confidence 5667777777778877 3333222222222 2233456788888999998776 99999874555665556666 99
Q ss_pred EEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceee-eccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEE
Q 005140 258 LIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMR-DFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAK 336 (712)
Q Consensus 258 ~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~ 336 (712)
++.||-||+|+++.|.| .++++|++.+++.+. ..-+|...+ |. +++.| + ++++
T Consensus 180 ~i~~s~dg~~i~s~SdD----------RsiRlW~i~s~~~~~~~~fgHsaRv------------w~-~~~~~-n--~i~t 233 (967)
T KOG0974|consen 180 SIVTSLDGRYIASVSDD----------RSIRLWPIDSREVLGCTGFGHSARV------------WA-CCFLP-N--RIIT 233 (967)
T ss_pred EEEEccCCcEEEEEecC----------cceeeeecccccccCccccccccee------------EE-EEecc-c--eeEE
Confidence 99999999999999999 999999999998776 555666665 74 88988 6 8889
Q ss_pred ec-CCeEEEEEcCCceeccccccccc-CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEec
Q 005140 337 LG-KNMISVYETESFTLIDKKSLKVE-NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQI 396 (712)
Q Consensus 337 ~~-d~~i~iwd~~~~~~~~~~~~~~~-~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~ 396 (712)
++ |-+.++|..+. ..+.....|.. ++..++.+++...+++ ++.|+..++|.+..
T Consensus 234 ~gedctcrvW~~~~-~~l~~y~~h~g~~iw~~~~~~~~~~~vT-----~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 234 VGEDCTCRVWGVNG-TQLEVYDEHSGKGIWKIAVPIGVIIKVT-----GGNDSTLKLWDLNG 289 (967)
T ss_pred eccceEEEEEeccc-ceehhhhhhhhcceeEEEEcCCceEEEe-----eccCcchhhhhhhc
Confidence 88 99999997663 33334444543 5899999998888888 77888888776543
No 324
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.85 E-value=7.8e-09 Score=105.06 Aligned_cols=79 Identities=32% Similarity=0.520 Sum_probs=72.6
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.++|||+|||. +..++.|+++|.+||.|.. +.++.|+.+|+++|||||+|.+.++|..|++.++|..+.++
T Consensus 115 ~~~l~v~nL~~------~~~~~~l~~~F~~~g~~~~--~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~- 185 (306)
T COG0724 115 NNTLFVGNLPY------DVTEEDLRELFKKFGPVKR--VRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGR- 185 (306)
T ss_pred CceEEEeCCCC------CCCHHHHHHHHHhcCceeE--EEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCc-
Confidence 69999999996 5669999999999999999 99999988999999999999999999999999999999986
Q ss_pred EEEEEeec
Q 005140 139 IFAVNMFD 146 (712)
Q Consensus 139 ~l~v~~~~ 146 (712)
.+.|....
T Consensus 186 ~~~v~~~~ 193 (306)
T COG0724 186 PLRVQKAQ 193 (306)
T ss_pred eeEeeccc
Confidence 77776643
No 325
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.85 E-value=1.4e-07 Score=102.38 Aligned_cols=134 Identities=16% Similarity=0.242 Sum_probs=107.2
Q ss_pred cccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--cee
Q 005140 439 YTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QAN 516 (712)
Q Consensus 439 ~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~ 516 (712)
++++.+|.......+. .+.+|.+.|.++.|+-||.++++.+.|. ++++|++++.... ....-+| .+.
T Consensus 154 ~~~iivW~~~~dn~p~---~l~GHeG~iF~i~~s~dg~~i~s~SdDR---siRlW~i~s~~~~-----~~~~fgHsaRvw 222 (967)
T KOG0974|consen 154 FGEIIVWKPHEDNKPI---RLKGHEGSIFSIVTSLDGRYIASVSDDR---SIRLWPIDSREVL-----GCTGFGHSARVW 222 (967)
T ss_pred cccEEEEeccccCCcc---eecccCCceEEEEEccCCcEEEEEecCc---ceeeeeccccccc-----CcccccccceeE
Confidence 4458889888666664 6779999999999999999999999999 9999999876542 1122234 678
Q ss_pred EEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--cc-ccceeeEEECCCCCEEEEEEccceeccccEEEEEecCce
Q 005140 517 ALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AE-HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKL 593 (712)
Q Consensus 517 ~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~-~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~ 593 (712)
.++|.|+ .+++++. |.+.++|+.+. .++.. .| ...+..++..++...++|++. |+++++|++.+..
T Consensus 223 ~~~~~~n--~i~t~ge---dctcrvW~~~~-~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~-----Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 223 ACCFLPN--RIITVGE---DCTCRVWGVNG-TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGN-----DSTLKLWDLNGRG 291 (967)
T ss_pred EEEeccc--eeEEecc---ceEEEEEeccc-ceehhhhhhhhcceeEEEEcCCceEEEeecc-----Ccchhhhhhhccc
Confidence 9999998 8999998 99999997763 33322 23 367889999999999999999 9999999987654
Q ss_pred e
Q 005140 594 L 594 (712)
Q Consensus 594 ~ 594 (712)
.
T Consensus 292 ~ 292 (967)
T KOG0974|consen 292 L 292 (967)
T ss_pred c
Confidence 3
No 326
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.85 E-value=2.8e-09 Score=96.82 Aligned_cols=80 Identities=21% Similarity=0.350 Sum_probs=71.3
Q ss_pred cCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 005140 56 SGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135 (712)
Q Consensus 56 ~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 135 (712)
-..+|.|||-+||. +.-..+|..+|-+||.|++ ..+-+|+.|..+|.|+||.|.++..|+.||..|||+.|+
T Consensus 282 GPeGCNlFIYHLPQ------EFgDaEliQmF~PFGhivS--aKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIG 353 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQ------EFGDAELIQMFLPFGHIVS--AKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIG 353 (371)
T ss_pred CCCcceEEEEeCch------hhccHHHHHHhccccceee--eeeeehhccccccceeeEecCCchhHHHHHHHhcchhhh
Confidence 33689999999997 6668889999999999999 889999999999999999999999999999999999997
Q ss_pred CceEEEEEe
Q 005140 136 RAHIFAVNM 144 (712)
Q Consensus 136 ~~~~l~v~~ 144 (712)
-+ +|+|-.
T Consensus 354 MK-RLKVQL 361 (371)
T KOG0146|consen 354 MK-RLKVQL 361 (371)
T ss_pred hh-hhhhhh
Confidence 54 565543
No 327
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.84 E-value=1.3e-06 Score=81.88 Aligned_cols=144 Identities=16% Similarity=0.193 Sum_probs=83.2
Q ss_pred EEEcCCCcEEEEEecCceEEeecccCcce---eeee---cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEc
Q 005140 219 VQWSPLGTYLATVHRQGAAVWGGANTFNR---LMRY---AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDV 292 (712)
Q Consensus 219 v~~Spdg~~lat~~~~~i~iw~~~~~~~~---~~~~---~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~ 292 (712)
++.+++|++||..-...|-|-.....+.. .++. +++.-+-++||||+..||.+... |+|++||+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~----------G~i~vfdl 72 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAEST----------GTIRVFDL 72 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCC----------CeEEEEec
Confidence 67889999999998777767655433332 2223 34568999999999999999999 99999998
Q ss_pred cCCceeeeccCCCcccccCCCCCcCCCCcC----eEEecCCCCCEEEEecCCeEEEEEcCCce-----ecccccc---cc
Q 005140 293 RTGKVMRDFKGSADEFAVGGTGGVAGVSWP----VFRWGGGKDKYFAKLGKNMISVYETESFT-----LIDKKSL---KV 360 (712)
Q Consensus 293 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~s~~dg~~la~~~d~~i~iwd~~~~~-----~~~~~~~---~~ 360 (712)
.|..+..+....... ......+.|+.+. .-.|+. .+|+..-.|.++-|-+..+. ......+ ..
T Consensus 73 -~g~~lf~I~p~~~~~-~d~~~Aiagl~Fl~~~~s~~ws~---ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp 147 (282)
T PF15492_consen 73 -MGSELFVIPPAMSFP-GDLSDAIAGLIFLEYKKSAQWSY---ELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYP 147 (282)
T ss_pred -ccceeEEcCcccccC-CccccceeeeEeeccccccccce---eEEEEeccceeeeEEEEcccCCcceeeEEEEecccCC
Confidence 555555555432111 0111122221110 112222 33444347777766653221 1111111 12
Q ss_pred cCeeeEEECCCCCeEEE
Q 005140 361 ENVMDFSWSPTDPIISL 377 (712)
Q Consensus 361 ~~v~~~~~sp~~~~la~ 377 (712)
.+|.++.++|..+.|++
T Consensus 148 ~Gi~~~vy~p~h~LLlV 164 (282)
T PF15492_consen 148 HGINSAVYHPKHRLLLV 164 (282)
T ss_pred CceeEEEEcCCCCEEEE
Confidence 35777777777766665
No 328
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.84 E-value=1.2e-06 Score=89.77 Aligned_cols=197 Identities=12% Similarity=0.144 Sum_probs=136.3
Q ss_pred cCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcC-----------eEEe----
Q 005140 262 SPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWP-----------VFRW---- 326 (712)
Q Consensus 262 Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~---- 326 (712)
.|-+.|+|....+ |.++||+..+++....|....... +.-....|. +..|
T Consensus 2 ~~~~~~~A~~~~~----------g~l~iw~t~~~~~~~e~~p~~~~s-----~t~~~~~w~L~~~~s~~k~~~~~~~~~~ 66 (541)
T KOG4547|consen 2 PPALDYFALSTGD----------GRLRIWDTAKNQLQQEFAPIASLS-----GTCTYTKWGLSADYSPMKWLSLEKAKKA 66 (541)
T ss_pred CchhheEeecCCC----------CeEEEEEccCceeeeeeccchhcc-----CcceeEEEEEEeccchHHHHhHHHHhhc
Confidence 4567889998888 999999999988777665432111 000001121 1111
Q ss_pred cCCCCCEEEEec-CCeEEEEEcCCceeccccc--ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcccee
Q 005140 327 GGGKDKYFAKLG-KNMISVYETESFTLIDKKS--LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELR 403 (712)
Q Consensus 327 s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~ 403 (712)
+. +-..++-+. .|.|.+|+...+++..+.. .|.++|.++.|+.+-.+|.+ .+...++..|+......++
T Consensus 67 s~-~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS-------~~ad~~v~~~~~~~~~~~~ 138 (541)
T KOG4547|consen 67 SL-DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYS-------VGADLKVVYILEKEKVIIR 138 (541)
T ss_pred cC-CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEe-------cCCceeEEEEecccceeee
Confidence 12 333555555 8999999999888776654 46778999999988888877 4555667777777766666
Q ss_pred eeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeC-----CCEE
Q 005140 404 QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK-----GHRF 478 (712)
Q Consensus 404 ~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~-----g~~l 478 (712)
.....+.....+..+|||..+++++.. +.+|++..+.. ...+++|.++|.+++|--+ |.++
T Consensus 139 ~~~~~~~~~~sl~is~D~~~l~~as~~-----------ik~~~~~~kev---v~~ftgh~s~v~t~~f~~~~~g~~G~~v 204 (541)
T KOG4547|consen 139 IWKEQKPLVSSLCISPDGKILLTASRQ-----------IKVLDIETKEV---VITFTGHGSPVRTLSFTTLIDGIIGKYV 204 (541)
T ss_pred eeccCCCccceEEEcCCCCEEEeccce-----------EEEEEccCceE---EEEecCCCcceEEEEEEEecccccccee
Confidence 555555556667789999999887664 78999886543 3678999999999999887 7787
Q ss_pred EEEEcCCCCCeEEEEEeec
Q 005140 479 AVIHGDSPRPDISFYSMRT 497 (712)
Q Consensus 479 ~~~~~d~~~~~v~i~d~~~ 497 (712)
.++..-.. -+.+|-+..
T Consensus 205 Lssa~~~r--~i~~w~v~~ 221 (541)
T KOG4547|consen 205 LSSAAAER--GITVWVVEK 221 (541)
T ss_pred eecccccc--ceeEEEEEc
Confidence 77655321 566776654
No 329
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.83 E-value=2e-06 Score=100.78 Aligned_cols=114 Identities=11% Similarity=0.142 Sum_probs=79.2
Q ss_pred ceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEE-----------EeC----------CCceeEEEEccC
Q 005140 465 KIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLT-----------TLK----------GKQANALFWSPS 523 (712)
Q Consensus 465 ~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~-----------~~~----------~~~v~~l~~spd 523 (712)
....++++|+|++|+++.... +.|++||+.++... .+. .+. ......++++|+
T Consensus 741 ~P~GIavspdG~~LYVADs~n--~~Irv~D~~tg~~~----~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~d 814 (1057)
T PLN02919 741 QPSGISLSPDLKELYIADSES--SSIRALDLKTGGSR----LLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKD 814 (1057)
T ss_pred CccEEEEeCCCCEEEEEECCC--CeEEEEECCCCcEE----EEEecccccCcccccccCCCCchhhhhccCCceeeEeCC
Confidence 456799999999777666543 28999998754311 110 010 012357899999
Q ss_pred CCeEEEEeccCCCceEEEEECCcceeeeecc---------------ccceeeEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 524 GRFIVLAGLKGFNGQLEFYNVDELETMATAE---------------HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 524 g~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~---------------~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
|+.+++... ++.|++||..++.+..... -.....++++++|+.+++-+. ++.|++|+
T Consensus 815 G~LYVADs~---N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~-----Nn~Irvid 886 (1057)
T PLN02919 815 GQIYVADSY---NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN-----NSLIRYLD 886 (1057)
T ss_pred CcEEEEECC---CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC-----CCEEEEEE
Confidence 987776665 8999999998766543211 124678999999997777666 89999999
Q ss_pred ecCc
Q 005140 589 FNGK 592 (712)
Q Consensus 589 ~~g~ 592 (712)
+...
T Consensus 887 ~~~~ 890 (1057)
T PLN02919 887 LNKG 890 (1057)
T ss_pred CCCC
Confidence 8754
No 330
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.82 E-value=5.6e-06 Score=80.37 Aligned_cols=246 Identities=13% Similarity=0.146 Sum_probs=152.4
Q ss_pred eeEEEecCCC-CEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEE
Q 005140 256 VKLIDFSPGE-KYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYF 334 (712)
Q Consensus 256 v~~i~~Spdg-~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~l 334 (712)
...++.+|.. ..++.+-.. - .-..+||..+|+.+..+.......- +| .-.||+ ||++|
T Consensus 7 gH~~a~~p~~~~avafaRRP-G--------~~~~v~D~~~g~~~~~~~a~~gRHF-------yG----Hg~fs~-dG~~L 65 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRP-G--------TFALVFDCRTGQLLQRLWAPPGRHF-------YG----HGVFSP-DGRLL 65 (305)
T ss_pred ccceeeCCCCCeEEEEEeCC-C--------cEEEEEEcCCCceeeEEcCCCCCEE-------ec----CEEEcC-CCCEE
Confidence 4578899954 455555544 1 3577999999998887766554431 22 468999 99999
Q ss_pred EEec------CCeEEEEEcC-CceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeee
Q 005140 335 AKLG------KNMISVYETE-SFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL 407 (712)
Q Consensus 335 a~~~------d~~i~iwd~~-~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 407 (712)
++.- .|.|-|||.. +...+.....+--+-..+.+.|||+.|++. ++-+.-
T Consensus 66 ytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVA-------NGGI~T---------------- 122 (305)
T PF07433_consen 66 YTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVA-------NGGIET---------------- 122 (305)
T ss_pred EEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEE-------cCCCcc----------------
Confidence 9875 4789999998 555555444444456789999999888872 222110
Q ss_pred eeecceeEEECcCC-C-EEEEEEcccccccccccccEEEEEE-ecCCcceeEEEec--CCCCceEEEEEeeCCCEEEEEE
Q 005140 408 FSVSDCKMYWQSSG-D-YLAVKVDRYTKTKKSTYTGFELFRI-KERDIPIEVLELD--NKNDKIIAFAWEPKGHRFAVIH 482 (712)
Q Consensus 408 ~~~~~~~~~~s~~g-~-~l~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~~~~~l~--~h~~~v~~~~~sp~g~~l~~~~ 482 (712)
+|+. + .|-..+.+. .|-.+ ...+.-..+..++ -|.-.|..+++.++|..++..-
T Consensus 123 ----------hpd~GR~kLNl~tM~p-----------sL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q 181 (305)
T PF07433_consen 123 ----------HPDSGRAKLNLDTMQP-----------SLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQ 181 (305)
T ss_pred ----------CcccCceecChhhcCC-----------ceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEe
Confidence 1110 0 000000000 01111 1112223334442 3667899999999987766655
Q ss_pred cCCC----CCeEEEEEeecccccCceeEEEEeC-------CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeee
Q 005140 483 GDSP----RPDISFYSMRTAQHAGRVSKLTTLK-------GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA 551 (712)
Q Consensus 483 ~d~~----~~~v~i~d~~~~~~~~~~~~~~~~~-------~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~ 551 (712)
..+. .+-|-+++.... . .....+ .+.+-+++++++|.++++++- ..+.+.+||..+++.+.
T Consensus 182 ~qg~~~~~~PLva~~~~g~~-----~-~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP--rGg~~~~~d~~tg~~~~ 253 (305)
T PF07433_consen 182 YQGDPGDAPPLVALHRRGGA-----L-RLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP--RGGRVAVWDAATGRLLG 253 (305)
T ss_pred cCCCCCccCCeEEEEcCCCc-----c-eeccCChHHHHhhCCceEEEEEeCCCCEEEEECC--CCCEEEEEECCCCCEee
Confidence 4432 123444443211 0 111111 245789999999998877664 27899999999999998
Q ss_pred eccccceeeEEECCCCCEEEEEEc
Q 005140 552 TAEHFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 552 ~~~~~~v~~~~~spdg~~l~t~s~ 575 (712)
...-..+..++-.+++ ++++++.
T Consensus 254 ~~~l~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 254 SVPLPDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred ccccCceeeeeecCCc-eEEeCCC
Confidence 8777778888888888 6666555
No 331
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.81 E-value=1.2e-08 Score=102.37 Aligned_cols=84 Identities=26% Similarity=0.415 Sum_probs=71.1
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.-.|+|.|||+-. -..+|..+|++||.|.+ |.||.-+ .|+..|||||.|....+|.+|++.+||..++|+
T Consensus 117 k~rLIIRNLPf~~------k~~dLk~vFs~~G~V~E--i~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR- 186 (678)
T KOG0127|consen 117 KWRLIIRNLPFKC------KKPDLKNVFSNFGKVVE--IVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGR- 186 (678)
T ss_pred cceEEeecCCccc------CcHHHHHHHhhcceEEE--EEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCc-
Confidence 5689999999732 26689999999999999 9999888 555669999999999999999999999999996
Q ss_pred EEEEEeeccccccc
Q 005140 139 IFAVNMFDDFDKFM 152 (712)
Q Consensus 139 ~l~v~~~~~~~~~~ 152 (712)
++.|-..-+-..|.
T Consensus 187 ~VAVDWAV~Kd~ye 200 (678)
T KOG0127|consen 187 PVAVDWAVDKDTYE 200 (678)
T ss_pred eeEEeeeccccccc
Confidence 77776655555554
No 332
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.76 E-value=7e-07 Score=91.36 Aligned_cols=189 Identities=14% Similarity=0.138 Sum_probs=140.5
Q ss_pred CCCCceEEEEECCeeEEEecCCCCCCCccccc---CCCcccceEEEc------C--------------CCcEEEEEecCc
Q 005140 179 EKARDQFVIRSGTDTEVLWNDARHLKPEPVYK---RSYWTESFVQWS------P--------------LGTYLATVHRQG 235 (712)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~---~~~~~v~~v~~S------p--------------dg~~lat~~~~~ 235 (712)
|.+-++|+...+++...+|+.. ..+....|. +-..++++..|. | |-..||-|...|
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~-~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g 80 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTA-KNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQG 80 (541)
T ss_pred CchhheEeecCCCCeEEEEEcc-CceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCc
Confidence 4466789999999999999983 333322222 223455566662 2 233566666777
Q ss_pred -eEEeecccCcceeeeec---CCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCccccc
Q 005140 236 -AAVWGGANTFNRLMRYA---HPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAV 310 (712)
Q Consensus 236 -i~iw~~~~~~~~~~~~~---~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~ 310 (712)
|.+|+.. .++...++. |.+ |.++.++.+-..|.+++.+ +.+..|+..+++.++.+......+.
T Consensus 81 ~v~~ys~~-~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad----------~~v~~~~~~~~~~~~~~~~~~~~~~- 148 (541)
T KOG4547|consen 81 SVLLYSVA-GGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGAD----------LKVVYILEKEKVIIRIWKEQKPLVS- 148 (541)
T ss_pred cEEEEEec-CCeEEEEEecCCCCCcceeeecccccCceEecCCc----------eeEEEEecccceeeeeeccCCCccc-
Confidence 8899988 677666553 554 9999999999999999999 9999999999999999988766553
Q ss_pred CCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceecccccccccCeeeEEECCC-----CCeEEEEeecCCCC
Q 005140 311 GGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPT-----DPIISLFVPELGGG 385 (712)
Q Consensus 311 ~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~-----~~~la~~~~~~~~~ 385 (712)
.++.+| ||+.+++++ ++|++|++++++++..+..|.+.|++++|--. |.+++.. ...
T Consensus 149 ------------sl~is~-D~~~l~~as-~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLss----a~~ 210 (541)
T KOG4547|consen 149 ------------SLCISP-DGKILLTAS-RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSS----AAA 210 (541)
T ss_pred ------------eEEEcC-CCCEEEecc-ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeec----ccc
Confidence 689999 999888765 78999999999999999999999999998766 5666542 223
Q ss_pred CCCeEEEEEecCC
Q 005140 386 NQPARVSLVQIPS 398 (712)
Q Consensus 386 ~~~~~i~~~~~~~ 398 (712)
.....+|..+...
T Consensus 211 ~r~i~~w~v~~~~ 223 (541)
T KOG4547|consen 211 ERGITVWVVEKED 223 (541)
T ss_pred ccceeEEEEEccc
Confidence 4445566666533
No 333
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.73 E-value=4e-08 Score=105.84 Aligned_cols=76 Identities=21% Similarity=0.228 Sum_probs=65.4
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
..+++|||+|||.- ...+..|+++|++||.|.+ |.++.++ +|||||+|.+.++|.+|+..|||..+.+
T Consensus 273 ~~~~~l~v~nL~~~-----~vt~~~L~~lF~~yG~V~~--vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g 340 (481)
T TIGR01649 273 GPGSVLMVSGLHQE-----KVNCDRLFNLFCVYGNVER--VKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFG 340 (481)
T ss_pred CCCCEEEEeCCCCC-----CCCHHHHHHHHHhcCCeEE--EEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 35789999999940 1337889999999999999 9999873 6999999999999999999999999998
Q ss_pred ceEEEEEee
Q 005140 137 AHIFAVNMF 145 (712)
Q Consensus 137 ~~~l~v~~~ 145 (712)
+ .+.|...
T Consensus 341 ~-~l~v~~s 348 (481)
T TIGR01649 341 K-PLRVCPS 348 (481)
T ss_pred c-eEEEEEc
Confidence 5 8888653
No 334
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.69 E-value=1.7e-06 Score=82.53 Aligned_cols=332 Identities=13% Similarity=0.121 Sum_probs=201.8
Q ss_pred CcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCC---CeeEEEecCCCCEEEEEcCCCCCCCc
Q 005140 205 PEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHP---QVKLIDFSPGEKYLVTYSSHEPSNPR 280 (712)
Q Consensus 205 ~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~---~v~~i~~Spdg~~l~t~s~d~~~~~~ 280 (712)
....++||...++....-|-..-+.+.+.|. ++||--...++.-..+.|. .++++.++++-..|+.|-..
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~n------ 89 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDN------ 89 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEec------
Confidence 3446788988888888888878899999988 8899433255554444433 49999999999999999888
Q ss_pred CCCccEEEEEEcc----CCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccc
Q 005140 281 DANRVVINIFDVR----TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDK 355 (712)
Q Consensus 281 ~~~~~~I~iwd~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~ 355 (712)
|++.-+.+. ....++....|...+. .+-|+- ....+++.+ |..+.---.+.+..+..
T Consensus 90 ----gtvtefs~sedfnkm~~~r~~~~h~~~v~-------------~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~ 151 (404)
T KOG1409|consen 90 ----GTVTEFALSEDFNKMTFLKDYLAHQARVS-------------AIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGG 151 (404)
T ss_pred ----ceEEEEEhhhhhhhcchhhhhhhhhccee-------------eEEecC-CceeEEEeccccceEEEeeccCCcccc
Confidence 888877653 3344566666655542 455665 567777777 65554333334433322
Q ss_pred ccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccc
Q 005140 356 KSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTK 435 (712)
Q Consensus 356 ~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~ 435 (712)
..+.. +..+..+.+.+ .-.|-..+.+.+..+.......+.....+......+.|.+....|.++..+..
T Consensus 152 Y~~~~-------~~t~~~~d~~~-~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~--- 220 (404)
T KOG1409|consen 152 YNFET-------PASALQFDALY-AFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHS--- 220 (404)
T ss_pred eEeec-------cCCCCceeeEE-EEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCc---
Confidence 21111 11111111110 00021233333444444445566666767777788899999999999998877
Q ss_pred ccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeeccccc-C------ceeEEE
Q 005140 436 KSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHA-G------RVSKLT 508 (712)
Q Consensus 436 ~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~-~------~~~~~~ 508 (712)
+.+|++... +....++.+|...|..+...+--+.+.++..|+ .|.+|+++..... . .|..-.
T Consensus 221 ------vi~wdigg~--~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg---~i~~w~mn~~r~etpewl~s~~cQ~c~ 289 (404)
T KOG1409|consen 221 ------VIMWDIGGR--KGTAYELQGHNDKVQALSYAQHTRQLISCGEDG---GIVVWNMNVKRVETPEWLDSDSCQKCN 289 (404)
T ss_pred ------eEEEeccCC--cceeeeeccchhhhhhhhhhhhheeeeeccCCC---eEEEEeccceeecCccccccchhhhhC
Confidence 788888753 333467778999999999888889999999999 8999999643210 0 000000
Q ss_pred --------------E--eCCCce----eEE--EEccCCCeEEEEeccCCCceEEEEECC-------cceeeeeccc--cc
Q 005140 509 --------------T--LKGKQA----NAL--FWSPSGRFIVLAGLKGFNGQLEFYNVD-------ELETMATAEH--FM 557 (712)
Q Consensus 509 --------------~--~~~~~v----~~l--~~spdg~~l~~~~~~~~dg~v~iwd~~-------~~~~~~~~~~--~~ 557 (712)
. +..|.+ +.+ .-+.+.....+-+. .-.+++-|.- +...++..|. ..
T Consensus 290 qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~---e~~vR~~~~c~~~i~~~~~t~LA~phei~tg 366 (404)
T KOG1409|consen 290 QPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGF---EFSVRVCDSCYPTIKDEERTPLAIPHEIKTG 366 (404)
T ss_pred chHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccc---eeEEEEecccchhhhcCCCCccccccccccc
Confidence 0 000000 001 11111111112222 2344444322 1222444443 57
Q ss_pred eeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 558 ATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 558 v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
|+.+.+.-+-..|+|++. |..|+|||+.
T Consensus 367 ItamhlqetlglLvTsG~-----~Rvi~iwd~~ 394 (404)
T KOG1409|consen 367 ITAMHLQETLGLLVTSGT-----DRVIKIWDVR 394 (404)
T ss_pred eeEEEhhhhccceeecCC-----ceEEEEEech
Confidence 899999999889999999 9999999986
No 335
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.68 E-value=3.6e-05 Score=77.17 Aligned_cols=283 Identities=16% Similarity=0.130 Sum_probs=132.6
Q ss_pred ceEEEcCCCcEEEEEec-Cc---eEEeecccCcceeeeecC--CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEE
Q 005140 217 SFVQWSPLGTYLATVHR-QG---AAVWGGANTFNRLMRYAH--PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIF 290 (712)
Q Consensus 217 ~~v~~Spdg~~lat~~~-~~---i~iw~~~~~~~~~~~~~~--~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iw 290 (712)
+.-+|.+||+.|++++. ++ +.+.|+. +++...--.. .......+||+++.|+..... ..|+-.
T Consensus 39 ~~~~ft~dG~kllF~s~~dg~~nly~lDL~-t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~----------~~l~~v 107 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFDGNRNLYLLDLA-TGEITQLTDGPGDNTFGGFLSPDDRALYYVKNG----------RSLRRV 107 (386)
T ss_dssp TS--B-TTS-EEEEEE-TTSS-EEEEEETT-T-EEEE---SS-B-TTT-EE-TTSSEEEEEETT----------TEEEEE
T ss_pred cCCCcCCCCCEEEEEeccCCCcceEEEEcc-cCEEEECccCCCCCccceEEecCCCeEEEEECC----------CeEEEE
Confidence 34578999988777664 44 5566777 4443322222 234567888999998876555 578899
Q ss_pred EccCCceeeeccCCCcccccCCCCCcCCCCcCeEEec--CCCCCEEEEec----C-------------------CeEEEE
Q 005140 291 DVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWG--GGKDKYFAKLG----K-------------------NMISVY 345 (712)
Q Consensus 291 d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~dg~~la~~~----d-------------------~~i~iw 345 (712)
|+.+++....+..+..-.. ...|+ . |+..++... + ..|.-.
T Consensus 108 dL~T~e~~~vy~~p~~~~g-------------~gt~v~n~-d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~i 173 (386)
T PF14583_consen 108 DLDTLEERVVYEVPDDWKG-------------YGTWVANS-DCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTI 173 (386)
T ss_dssp ETTT--EEEEEE--TTEEE-------------EEEEEE-T-TSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEE
T ss_pred ECCcCcEEEEEECCccccc-------------ccceeeCC-CccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEE
Confidence 9988876555554443321 23553 4 566665442 1 234445
Q ss_pred EcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc--ceeeeeeeeecceeEEECcCCCE
Q 005140 346 ETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE--ELRQKNLFSVSDCKMYWQSSGDY 423 (712)
Q Consensus 346 d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~g~~ 423 (712)
++.+|+..... ....-+..+.|||....++.++-+.....-..+||.++..... .+.... .......=.|.|+|..
T Consensus 174 dl~tG~~~~v~-~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~~ 251 (386)
T PF14583_consen 174 DLKTGERKVVF-EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGST 251 (386)
T ss_dssp ETTT--EEEEE-EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-
T ss_pred ECCCCceeEEE-ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCCE
Confidence 55655432111 1122367899999988887777664223335699999976543 222222 1112222369999998
Q ss_pred EEEEEcccccccccccccEEEEEEecCCcceeE-EEecCCCCceEEEEEeeCCCEEEEEEcCCC-------------CCe
Q 005140 424 LAVKVDRYTKTKKSTYTGFELFRIKERDIPIEV-LELDNKNDKIIAFAWEPKGHRFAVIHGDSP-------------RPD 489 (712)
Q Consensus 424 l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~-------------~~~ 489 (712)
|.+-..... + ....+..+......... ..+ .....+--++||++|+-=+.|.+ .+-
T Consensus 252 i~y~~~~~~--~----~~~~i~~~d~~t~~~~~~~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~ 321 (386)
T PF14583_consen 252 IWYDSYTPG--G----QDFWIAGYDPDTGERRRLMEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPW 321 (386)
T ss_dssp EEEEEEETT--T------EEEEEE-TTT--EEEEEEE-----SEEEEEE-TTSSEEEEEE-------------------E
T ss_pred EEEEeecCC--C----CceEEEeeCCCCCCceEEEeC----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcE
Confidence 877443111 0 01233333332222111 222 23445666789988765554422 124
Q ss_pred EEEEEeecccccCceeEEEE-------eCCC-ce--eEEEEccCCCeEEEEeccCCCceEEEE
Q 005140 490 ISFYSMRTAQHAGRVSKLTT-------LKGK-QA--NALFWSPSGRFIVLAGLKGFNGQLEFY 542 (712)
Q Consensus 490 v~i~d~~~~~~~~~~~~~~~-------~~~~-~v--~~l~~spdg~~l~~~~~~~~dg~v~iw 542 (712)
|+++++..+... .+.. +.++ .+ ..+.|||||++++..+. +.|...||
T Consensus 322 i~~~~~~~~~~~----~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd--~~G~~~vY 378 (386)
T PF14583_consen 322 IYLFDVEAGRFR----KLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSD--MEGPPAVY 378 (386)
T ss_dssp EEEEETTTTEEE----EEEE-------BTTBSSTT----EE-TTSSEEEEEE---TTSS-EEE
T ss_pred EEEeccccCcee----eeeeccCcceeecCCCccCCCCCccCCCCCEEEEECC--CCCCccEE
Confidence 556666543321 1111 1111 12 45899999999998875 25555555
No 336
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.67 E-value=2.2e-05 Score=87.20 Aligned_cols=273 Identities=12% Similarity=0.180 Sum_probs=140.6
Q ss_pred cccceEEEcCCCcEEEEEecCc-eEEeecccCcc-eeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEE
Q 005140 214 WTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN-RLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFD 291 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~-~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd 291 (712)
..|.++.|--++.-|+.+...| |.+.|.. +.. .+...-..+|.+++||||++.++..+.. +++.+-+
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~e-t~~~eivg~vd~GI~aaswS~Dee~l~liT~~----------~tll~mT 137 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPE-TLELEIVGNVDNGISAASWSPDEELLALITGR----------QTLLFMT 137 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccc-ccceeeeeeccCceEEEeecCCCcEEEEEeCC----------cEEEEEe
Confidence 5678889999998888888888 7777888 443 3333345679999999999999988887 6665443
Q ss_pred ccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCc-eecccccccccCeeeEEECC
Q 005140 292 VRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESF-TLIDKKSLKVENVMDFSWSP 370 (712)
Q Consensus 292 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp 370 (712)
.+-.++..-+.+..... .+ ....+-|-. ....| .++.|.....+.... +.+... -....=..++|--
T Consensus 138 -~~f~~i~E~~L~~d~~~---~s-----k~v~VGwGr-keTqf-rgs~gr~~~~~~~~~ek~~~~~-~~~~~~~~IsWRg 205 (1265)
T KOG1920|consen 138 -KDFEPIAEKPLDADDER---KS-----KFVNVGWGR-KETQF-RGSEGRQAARQKIEKEKALEQI-EQDDHKTSISWRG 205 (1265)
T ss_pred -ccccchhcccccccccc---cc-----ccceecccc-cceee-ecchhhhcccccccccccccch-hhccCCceEEEcc
Confidence 33333332222111100 00 000233333 22211 111111111111000 000000 0111235689999
Q ss_pred CCCeEEEEeecCCCCCCCeEEEEEecCC-ccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEec
Q 005140 371 TDPIISLFVPELGGGNQPARVSLVQIPS-KEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKE 449 (712)
Q Consensus 371 ~~~~la~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 449 (712)
||.++|+..-.. ..+.-+|.+|+... ........ ......+.|-|.|..+++........ .+.+|.-+.
T Consensus 206 Dg~~fAVs~~~~--~~~~RkirV~drEg~Lns~se~~--~~l~~~LsWkPsgs~iA~iq~~~sd~------~IvffErNG 275 (1265)
T KOG1920|consen 206 DGEYFAVSFVES--ETGTRKIRVYDREGALNSTSEPV--EGLQHSLSWKPSGSLIAAIQCKTSDS------DIVFFERNG 275 (1265)
T ss_pred CCcEEEEEEEec--cCCceeEEEecccchhhcccCcc--cccccceeecCCCCeEeeeeecCCCC------cEEEEecCC
Confidence 999999855433 33333444554331 01111111 11123468999999999876654421 245554332
Q ss_pred CCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccC
Q 005140 450 RDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPS 523 (712)
Q Consensus 450 ~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spd 523 (712)
-....-.+..+.....|..++|+.++..||+.........|++|-+.+- .+-+-..+.-....-+.|+|-
T Consensus 276 L~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny----hWYLKq~l~~~~~~~~~W~p~ 345 (1265)
T KOG1920|consen 276 LRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY----HWYLKQELQFSQKALLMWDPV 345 (1265)
T ss_pred ccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCe----EEEEEEEEeccccccccccCC
Confidence 1111111112222334899999999999999666544447999998432 222222222222223788883
No 337
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.67 E-value=7.7e-05 Score=74.88 Aligned_cols=311 Identities=12% Similarity=0.114 Sum_probs=142.2
Q ss_pred ecccCcceeeeecCCCe-------eEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCC
Q 005140 240 GGANTFNRLMRYAHPQV-------KLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGG 312 (712)
Q Consensus 240 ~~~~~~~~~~~~~~~~v-------~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~ 312 (712)
|.. ++.++.++....+ +.-+|.+||+.|+.++.- .+...+.+.|+.+++..+...+.....
T Consensus 16 D~~-TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~-------dg~~nly~lDL~t~~i~QLTdg~g~~~---- 83 (386)
T PF14583_consen 16 DPD-TGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDF-------DGNRNLYLLDLATGEITQLTDGPGDNT---- 83 (386)
T ss_dssp -TT-T--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-T-------TSS-EEEEEETTT-EEEE---SS-B-T----
T ss_pred CCC-CCceEEEecCCCCcccceeecCCCcCCCCCEEEEEecc-------CCCcceEEEEcccCEEEECccCCCCCc----
Confidence 555 7777777754443 234789999988887763 122678999999888665544432211
Q ss_pred CCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEE--CCCCCeEEEEeecCC------
Q 005140 313 TGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSW--SPTDPIISLFVPELG------ 383 (712)
Q Consensus 313 ~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~--sp~~~~la~~~~~~~------ 383 (712)
. ...+++ +++.++... ...|.-.|+.+.+..........-+....| +.++..++.......
T Consensus 84 --------~-g~~~s~-~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~ 153 (386)
T PF14583_consen 84 --------F-GGFLSP-DDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLT 153 (386)
T ss_dssp --------T-T-EE-T-TSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----
T ss_pred --------c-ceEEec-CCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCcc
Confidence 0 256788 888877664 678888888877643222222222333444 445666553321110
Q ss_pred ---------CCCCCeEEEEEecCCccceeeeeeeeecc--eeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCc
Q 005140 384 ---------GGNQPARVSLVQIPSKEELRQKNLFSVSD--CKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDI 452 (712)
Q Consensus 384 ---------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 452 (712)
...-..+|..+++.+++.- .++.... -.+.++|....+++-...+.- .. -..++|-++..+.
T Consensus 154 ~~~~f~e~~~a~p~~~i~~idl~tG~~~---~v~~~~~wlgH~~fsP~dp~li~fCHEGpw---~~-Vd~RiW~i~~dg~ 226 (386)
T PF14583_consen 154 KWKGFREFYEARPHCRIFTIDLKTGERK---VVFEDTDWLGHVQFSPTDPTLIMFCHEGPW---DL-VDQRIWTINTDGS 226 (386)
T ss_dssp SHHHHHHHHHC---EEEEEEETTT--EE---EEEEESS-EEEEEEETTEEEEEEEEE-S-T---TT-SS-SEEEEETTS-
T ss_pred ccHHHHHHHhhCCCceEEEEECCCCcee---EEEecCccccCcccCCCCCCEEEEeccCCc---ce-eceEEEEEEcCCC
Confidence 0012345666666554421 1111111 234567765544444333220 00 1136899887765
Q ss_pred ceeEEEecCCCCceEEEEEeeCCCEEEEEEc-CCC-CCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEE
Q 005140 453 PIEVLELDNKNDKIIAFAWEPKGHRFAVIHG-DSP-RPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLA 530 (712)
Q Consensus 453 ~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~-d~~-~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~ 530 (712)
....+.-......+..=-|.|||..|...+. .+. ...|.-+++.++.. ..+...+ ....+--|+||++++--
T Consensus 227 ~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~----~~~~~~p--~~~H~~ss~Dg~L~vGD 300 (386)
T PF14583_consen 227 NVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER----RRLMEMP--WCSHFMSSPDGKLFVGD 300 (386)
T ss_dssp --EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E----EEEEEE---SEEEEEE-TTSSEEEEE
T ss_pred cceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc----eEEEeCC--ceeeeEEcCCCCEEEec
Confidence 5433321111334555689999998888655 221 11344555554432 1333332 45678888999888764
Q ss_pred eccC-------------CCceEEEEECCcceeeeec-c---------cc--ceeeEEECCCCCEEEEEEccceeccccEE
Q 005140 531 GLKG-------------FNGQLEFYNVDELETMATA-E---------HF--MATDVEWDPTGRYVATAVTSVHEMENGFN 585 (712)
Q Consensus 531 ~~~~-------------~dg~v~iwd~~~~~~~~~~-~---------~~--~v~~~~~spdg~~l~t~s~~~~~~d~~v~ 585 (712)
+.+. .+--|+++++..+...... | +. .-..+.|||||++|+..|.. .|...
T Consensus 301 G~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~----~G~~~ 376 (386)
T PF14583_consen 301 GGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDM----EGPPA 376 (386)
T ss_dssp E-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-T----TSS-E
T ss_pred CCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCC----CCCcc
Confidence 4311 0125677888765543211 1 11 12468999999999999874 66666
Q ss_pred EEEe
Q 005140 586 IWSF 589 (712)
Q Consensus 586 iw~~ 589 (712)
||-+
T Consensus 377 vY~v 380 (386)
T PF14583_consen 377 VYLV 380 (386)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6643
No 338
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.66 E-value=1.6e-06 Score=81.36 Aligned_cols=275 Identities=15% Similarity=0.276 Sum_probs=158.0
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC-----ceeeeccCCCccccc----CCCCCcCCCCcCeEE
Q 005140 255 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG-----KVMRDFKGSADEFAV----GGTGGVAGVSWPVFR 325 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g-----~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 325 (712)
.|+++.|...|.||++|... |.|.+|.-... +.+..|++|...... .....+. .+.
T Consensus 28 ~ItaVefd~tg~YlatGDkg----------GRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin-----~I~ 92 (460)
T COG5170 28 KITAVEFDETGLYLATGDKG----------GRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKIN-----AIE 92 (460)
T ss_pred eeeEEEeccccceEeecCCC----------ceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhh-----hee
Confidence 48999999999999999988 89999974322 224456666543210 0111222 456
Q ss_pred ecCCCC---CEEEEecCCeEEEEEcCCce--eccccc----ccc--cC-e------eeEEECCCCCeEEEEeecCCCCCC
Q 005140 326 WGGGKD---KYFAKLGKNMISVYETESFT--LIDKKS----LKV--EN-V------MDFSWSPTDPIISLFVPELGGGNQ 387 (712)
Q Consensus 326 ~s~~dg---~~la~~~d~~i~iwd~~~~~--~~~~~~----~~~--~~-v------~~~~~sp~~~~la~~~~~~~~~~~ 387 (712)
|-. ++ .+|+++.|.+|++|.+.... ++..-. +|. ++ + .--..+....+++. .|
T Consensus 93 w~~-~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa-~p------- 163 (460)
T COG5170 93 WFD-DTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAA-KP------- 163 (460)
T ss_pred eec-CCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEe-cc-------
Confidence 655 43 36777779999999886432 111110 010 00 0 01111222223332 00
Q ss_pred CeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCC----
Q 005140 388 PARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKN---- 463 (712)
Q Consensus 388 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~---- 463 (712)
.+|+ .+.+....-++.++.+...++++.+- .+.+|.+.........+.+.+|+
T Consensus 164 -~rvy------------aNaH~yhiNSiS~NsD~et~lSaDdL----------rINLWnl~i~D~sFnIVDiKP~nmeeL 220 (460)
T COG5170 164 -CRVY------------ANAHPYHINSISFNSDKETLLSADDL----------RINLWNLEIIDGSFNIVDIKPHNMEEL 220 (460)
T ss_pred -ceec------------cccceeEeeeeeecCchheeeeccce----------eeeeccccccCCceEEEeccCccHHHH
Confidence 0110 01122222334566666665543321 25788887666666666665655
Q ss_pred -CceEEEEEeeC-CCEEEEEEcCCCCCeEEEEEeeccccc-CceeEEE-EeC----------CCceeEEEEccCCCeEEE
Q 005140 464 -DKIIAFAWEPK-GHRFAVIHGDSPRPDISFYSMRTAQHA-GRVSKLT-TLK----------GKQANALFWSPSGRFIVL 529 (712)
Q Consensus 464 -~~v~~~~~sp~-g~~l~~~~~d~~~~~v~i~d~~~~~~~-~~~~~~~-~~~----------~~~v~~l~~spdg~~l~~ 529 (712)
.-|++..|+|. ...|...+..| .|++-|++....- ..+++.. .+. -..|..+.|+|+|+++++
T Consensus 221 teVItSaeFhp~~cn~fmYSsSkG---~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIls 297 (460)
T COG5170 221 TEVITSAEFHPEMCNVFMYSSSKG---EIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILS 297 (460)
T ss_pred HHHHhhcccCHhHcceEEEecCCC---cEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEE
Confidence 35888899994 56666667777 8999999743210 0011110 010 114678999999999999
Q ss_pred EeccCCCceEEEEECCcc-eeeeec--------------cccce---eeEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 530 AGLKGFNGQLEFYNVDEL-ETMATA--------------EHFMA---TDVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 530 ~~~~~~dg~v~iwd~~~~-~~~~~~--------------~~~~v---~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
-.. -+|+|||.+.. ..+.+. ....| ..+.||.|.+.+++|+. .+.+-||-
T Consensus 298 Rdy----ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy-----~NNfgiyp 365 (460)
T COG5170 298 RDY----LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSY-----SNNFGIYP 365 (460)
T ss_pred ecc----ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCccccccccc-----ccceeeec
Confidence 875 78999998732 222221 12223 35889999999999998 67777765
No 339
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.65 E-value=8.3e-08 Score=103.38 Aligned_cols=73 Identities=14% Similarity=0.145 Sum_probs=62.7
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHh--CCCccCC
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKT--NGYKLDR 136 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~--~~~~~~~ 136 (712)
+++|||+|||. +..+++|+++|++||.|.. +.|+. +||||||+|.+.++|.+|++.+ |+..+.+
T Consensus 2 s~vv~V~nLp~------~~te~~L~~~f~~fG~V~~--v~i~~------~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g 67 (481)
T TIGR01649 2 SPVVHVRNLPQ------DVVEADLVEALIPFGPVSY--VMMLP------GKRQALVEFEDEESAKACVNFATSVPIYIRG 67 (481)
T ss_pred ccEEEEcCCCC------CCCHHHHHHHHHhcCCeeE--EEEEC------CCCEEEEEeCchHHHHHHHHHhhcCCceEcC
Confidence 57999999998 5559999999999999999 98885 3589999999999999999974 7788888
Q ss_pred ceEEEEEeec
Q 005140 137 AHIFAVNMFD 146 (712)
Q Consensus 137 ~~~l~v~~~~ 146 (712)
+ .+.|....
T Consensus 68 ~-~l~v~~s~ 76 (481)
T TIGR01649 68 Q-PAFFNYST 76 (481)
T ss_pred e-EEEEEecC
Confidence 5 77776543
No 340
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.65 E-value=8.3e-08 Score=102.48 Aligned_cols=71 Identities=24% Similarity=0.394 Sum_probs=62.1
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhcc--CeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQI--GVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~--g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
..+|||+|||. ...++.|+++|++| |.|.+ |.++ +|||||+|.+.++|.+|++.|||..|++
T Consensus 233 ~k~LfVgNL~~------~~tee~L~~~F~~f~~G~I~r--V~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~G 296 (578)
T TIGR01648 233 VKILYVRNLMT------TTTEEIIEKSFSEFKPGKVER--VKKI--------RDYAFVHFEDREDAVKAMDELNGKELEG 296 (578)
T ss_pred ccEEEEeCCCC------CCCHHHHHHHHHhcCCCceEE--EEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 46899999997 55589999999999 99998 7654 4699999999999999999999999998
Q ss_pred ceEEEEEeec
Q 005140 137 AHIFAVNMFD 146 (712)
Q Consensus 137 ~~~l~v~~~~ 146 (712)
+ .+.|....
T Consensus 297 r-~I~V~~Ak 305 (578)
T TIGR01648 297 S-EIEVTLAK 305 (578)
T ss_pred E-EEEEEEcc
Confidence 5 88887653
No 341
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.63 E-value=6.4e-05 Score=88.32 Aligned_cols=161 Identities=13% Similarity=0.066 Sum_probs=90.1
Q ss_pred hccCCCCCceEEEEECCeeEEEecCCCCCCCcccccC--------------CCcccceEEEcCCCcEEEEEecCc--eEE
Q 005140 175 WLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKR--------------SYWTESFVQWSPLGTYLATVHRQG--AAV 238 (712)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~--------------~~~~v~~v~~Spdg~~lat~~~~~--i~i 238 (712)
...++.+...|+.-++++.+..++.. +..+..+.. +-..-..++++++|..|+.+...+ |++
T Consensus 573 vavd~~~g~lyVaDs~n~rI~v~d~~--G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 573 LAIDLLNNRLFISDSNHNRIVVTDLD--GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEEEeCC--CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 35555555677777777777777652 222211111 112346799999988766665433 778
Q ss_pred eecccCcceeeeec-------------------CCCeeEEEecCC-CCEEEEEcCCCCCCCcCCCccEEEEEEccCCcee
Q 005140 239 WGGANTFNRLMRYA-------------------HPQVKLIDFSPG-EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVM 298 (712)
Q Consensus 239 w~~~~~~~~~~~~~-------------------~~~v~~i~~Spd-g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~ 298 (712)
+|.. +.. +.++. ......++|+|+ +..+++.+.+ +.|++||..++..
T Consensus 651 id~~-~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~----------~~I~v~d~~~g~v- 717 (1057)
T PLN02919 651 IDFV-NET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ----------HQIWEYNISDGVT- 717 (1057)
T ss_pred EecC-CCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC----------CeEEEEECCCCeE-
Confidence 8876 332 22210 112467999995 5555565556 7899999877653
Q ss_pred eeccCCCccccc-CCCCCcCCCCcC-eEEecCCCCCEEEEec--CCeEEEEEcCCce
Q 005140 299 RDFKGSADEFAV-GGTGGVAGVSWP-VFRWGGGKDKYFAKLG--KNMISVYETESFT 351 (712)
Q Consensus 299 ~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~s~~dg~~la~~~--d~~i~iwd~~~~~ 351 (712)
..+.+....... +.......+..| .++++| ++++|+.+. ++.|++||+.++.
T Consensus 718 ~~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~ 773 (1057)
T PLN02919 718 RVFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGG 773 (1057)
T ss_pred EEEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCc
Confidence 333222110000 000000111111 488999 998554444 8999999988654
No 342
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.62 E-value=2.2e-07 Score=105.74 Aligned_cols=212 Identities=15% Similarity=0.211 Sum_probs=151.2
Q ss_pred CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEEC
Q 005140 339 KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQ 418 (712)
Q Consensus 339 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s 418 (712)
++...-|....+...- ..+..+|.++.-+|...+.++ |+.++.+++|-|..+..-.. .....+....++.|+
T Consensus 2189 ~~~~~tq~~~~~~~~~--k~~v~~v~r~~sHp~~~~Ylt-----gs~dgsv~~~~w~~~~~v~~-~rt~g~s~vtr~~f~ 2260 (2439)
T KOG1064|consen 2189 PWLGSTQTSRGASVMI--KHPVENVRRMTSHPSDPYYLT-----GSQDGSVRMFEWGHGQQVVC-FRTAGNSRVTRSRFN 2260 (2439)
T ss_pred CccccceecccceeEe--ecccCceeeecCCCCCceEEe-----cCCCceEEEEeccCCCeEEE-eeccCcchhhhhhhc
Confidence 4555555544333321 235667899999999988888 88999999988876543322 222233555667889
Q ss_pred cCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecc
Q 005140 419 SSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTA 498 (712)
Q Consensus 419 ~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~ 498 (712)
.+|..+.++..++. +.+|.+. |.....-..|+...+++.|-. ..+++++......++.+||..-.
T Consensus 2261 ~qGnk~~i~d~dg~---------l~l~q~~----pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~ 2325 (2439)
T KOG1064|consen 2261 HQGNKFGIVDGDGD---------LSLWQAS----PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLP 2325 (2439)
T ss_pred ccCCceeeeccCCc---------eeecccC----CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccC
Confidence 99998888888776 7788876 223345567888888888865 55666654333348999997432
Q ss_pred cccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEccce
Q 005140 499 QHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVH 578 (712)
Q Consensus 499 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~ 578 (712)
. ....+++.+.+.++++++.|..+.|++|+. +|.|++||++..+++.+... |. .-.++++++.
T Consensus 2326 ~---~~s~v~~~H~~gaT~l~~~P~~qllisggr---~G~v~l~D~rqrql~h~~~~-------~~-~~~~f~~~ss--- 2388 (2439)
T KOG1064|consen 2326 P---MNSLVHTCHDGGATVLAYAPKHQLLISGGR---KGEVCLFDIRQRQLRHTFQA-------LD-TREYFVTGSS--- 2388 (2439)
T ss_pred c---ccceeeeecCCCceEEEEcCcceEEEecCC---cCcEEEeehHHHHHHHHhhh-------hh-hhheeeccCc---
Confidence 2 123566666778999999999999999998 99999999997776654332 45 5678999999
Q ss_pred eccccEEEEEecCc
Q 005140 579 EMENGFNIWSFNGK 592 (712)
Q Consensus 579 ~~d~~v~iw~~~g~ 592 (712)
.|.++||++++-
T Consensus 2389 --~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2389 --EGNIKIWRLSEF 2400 (2439)
T ss_pred --ccceEEEEcccc
Confidence 899999999854
No 343
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.61 E-value=5.3e-05 Score=71.40 Aligned_cols=72 Identities=15% Similarity=0.266 Sum_probs=48.4
Q ss_pred EEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC--ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEE
Q 005140 258 LIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG--KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA 335 (712)
Q Consensus 258 ~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la 335 (712)
.++.+++|+.||..-.. .|.|=..++. ..+.....+.+.. =.|.-++||| |+.+||
T Consensus 2 ~~~~~~~Gk~lAi~qd~-----------~iEiRsa~Ddf~si~~kcqVpkD~~----------PQWRkl~WSp-D~tlLa 59 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQ-----------CIEIRSAKDDFSSIIGKCQVPKDPN----------PQWRKLAWSP-DCTLLA 59 (282)
T ss_pred ceeecCCCcEEEEEecc-----------EEEEEeccCCchheeEEEecCCCCC----------chheEEEECC-CCcEEE
Confidence 36778999998877655 4555433221 2233333333332 1287899999 999999
Q ss_pred Eec-CCeEEEEEcCCce
Q 005140 336 KLG-KNMISVYETESFT 351 (712)
Q Consensus 336 ~~~-d~~i~iwd~~~~~ 351 (712)
.+. .|+|++||+....
T Consensus 60 ~a~S~G~i~vfdl~g~~ 76 (282)
T PF15492_consen 60 YAESTGTIRVFDLMGSE 76 (282)
T ss_pred EEcCCCeEEEEecccce
Confidence 998 9999999987533
No 344
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.61 E-value=2.2e-05 Score=83.45 Aligned_cols=246 Identities=8% Similarity=0.066 Sum_probs=133.0
Q ss_pred ecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcccee
Q 005140 326 WGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELR 403 (712)
Q Consensus 326 ~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~ 403 (712)
++| ||+.+...+ .+.+.+.|..+++...+.... .....++++|+|+++.+.+... .. ...+...+......+.
T Consensus 200 lpn-DGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNs--E~-G~tl~em~a~e~d~~v 274 (635)
T PRK02888 200 LPN-DGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNS--EE-GVTLAEMMAAERDWVV 274 (635)
T ss_pred cCC-CCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCc--cc-CcceeeeccccCceEE
Confidence 345 666554333 567777787777665443221 2356778999999988732110 11 1122222222111111
Q ss_pred eeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEec----CCcceeEEEecCCCCceEEEEEeeCCCEEE
Q 005140 404 QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKE----RDIPIEVLELDNKNDKIIAFAWEPKGHRFA 479 (712)
Q Consensus 404 ~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~----~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~ 479 (712)
..+.... -.+.++|++..+. .+. +.+.+... .......+.. ....+.+.+||||++++
T Consensus 275 vfni~~i----ea~vkdGK~~~V~--gn~---------V~VID~~t~~~~~~~v~~yIPV---GKsPHGV~vSPDGkyly 336 (635)
T PRK02888 275 VFNIARI----EEAVKAGKFKTIG--GSK---------VPVVDGRKAANAGSALTRYVPV---PKNPHGVNTSPDGKYFI 336 (635)
T ss_pred EEchHHH----HHhhhCCCEEEEC--CCE---------EEEEECCccccCCcceEEEEEC---CCCccceEECCCCCEEE
Confidence 1110000 0235677766652 111 34444443 1112222333 56778899999999999
Q ss_pred EEEcCCCCCeEEEEEeecccc------cCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCc------
Q 005140 480 VIHGDSPRPDISFYSMRTAQH------AGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE------ 546 (712)
Q Consensus 480 ~~~~d~~~~~v~i~d~~~~~~------~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~------ 546 (712)
+++.-.+ +|.++|+.+... ..+-..+.... +..-...+|.++|....+... |.+|..||+..
T Consensus 337 VanklS~--tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~---dsqv~kwn~~~a~~~~~ 411 (635)
T PRK02888 337 ANGKLSP--TVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFL---DSQIVKWNIEAAIRAYK 411 (635)
T ss_pred EeCCCCC--cEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEee---cceeEEEehHHHHHHhc
Confidence 9887442 899999976331 00111222322 223456789999986666666 89999999885
Q ss_pred ----ceeeeec-cccceeeEE------ECCCCCEEEEEEcc---ce-----eccccEEEEEecCceeeeecc
Q 005140 547 ----LETMATA-EHFMATDVE------WDPTGRYVATAVTS---VH-----EMENGFNIWSFNGKLLYRTLK 599 (712)
Q Consensus 547 ----~~~~~~~-~~~~v~~~~------~spdg~~l~t~s~~---~~-----~~d~~v~iw~~~g~~~~~~~~ 599 (712)
..++... -+..+-.+. -.|||+||++...- +. --...-++.|++|..+.-.+.
T Consensus 412 g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~skdrfl~vgpl~pen~qlidIsgdkM~lv~d 483 (635)
T PRK02888 412 GEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKFSKDRFLPVGPLHPENDQLIDISGDKMKLVHD 483 (635)
T ss_pred cccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccccccccccCCCCCCCCcceeEEccCCeeEEEec
Confidence 2233321 112222233 37999999988652 10 002345688888877665543
No 345
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.60 E-value=0.00018 Score=70.67 Aligned_cols=227 Identities=11% Similarity=0.100 Sum_probs=131.3
Q ss_pred eEEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCeeeEEEC-CCCCeEEEEeecCCCCCCCeEEEEEecCCc
Q 005140 323 VFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWS-PTDPIISLFVPELGGGNQPARVSLVQIPSK 399 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-p~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 399 (712)
.+.|.+ ....|.... .+.|..|+..++.... ...+....+.+. +++.++++ ..... .+++..+.
T Consensus 4 gp~~d~-~~g~l~~~D~~~~~i~~~~~~~~~~~~---~~~~~~~G~~~~~~~g~l~v~-------~~~~~--~~~d~~~g 70 (246)
T PF08450_consen 4 GPVWDP-RDGRLYWVDIPGGRIYRVDPDTGEVEV---IDLPGPNGMAFDRPDGRLYVA-------DSGGI--AVVDPDTG 70 (246)
T ss_dssp EEEEET-TTTEEEEEETTTTEEEEEETTTTEEEE---EESSSEEEEEEECTTSEEEEE-------ETTCE--EEEETTTT
T ss_pred ceEEEC-CCCEEEEEEcCCCEEEEEECCCCeEEE---EecCCCceEEEEccCCEEEEE-------EcCce--EEEecCCC
Confidence 467886 555554444 8999999988775432 233346777777 67666664 22222 33365554
Q ss_pred cceeeeee-----eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeC
Q 005140 400 EELRQKNL-----FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK 474 (712)
Q Consensus 400 ~~~~~~~~-----~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~ 474 (712)
+....... .......+.+.++|+..++........... .-.+|++...+.. ... . ..-...+.++|+|+
T Consensus 71 ~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~---~g~v~~~~~~~~~-~~~-~-~~~~~pNGi~~s~d 144 (246)
T PF08450_consen 71 KVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGID---PGSVYRIDPDGKV-TVV-A-DGLGFPNGIAFSPD 144 (246)
T ss_dssp EEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGG---SEEEEEEETTSEE-EEE-E-EEESSEEEEEEETT
T ss_pred cEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCcccccc---ccceEEECCCCeE-EEE-e-cCcccccceEECCc
Confidence 32211111 112233457899999555544332211100 0468888766322 111 1 12355778999999
Q ss_pred CCEEEEEEcCCCCCeEEEEEeecccc-cCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeee
Q 005140 475 GHRFAVIHGDSPRPDISFYSMRTAQH-AGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA 551 (712)
Q Consensus 475 g~~l~~~~~d~~~~~v~i~d~~~~~~-~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~ 551 (712)
++.|+++.... ..|..|++..... ......+..+... ....+++..+|+..++... .+.|.+++.+ ++++.
T Consensus 145 g~~lyv~ds~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~---~~~I~~~~p~-G~~~~ 218 (246)
T PF08450_consen 145 GKTLYVADSFN--GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG---GGRIVVFDPD-GKLLR 218 (246)
T ss_dssp SSEEEEEETTT--TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET---TTEEEEEETT-SCEEE
T ss_pred chheeeccccc--ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC---CCEEEEECCC-ccEEE
Confidence 99888766533 2788888864332 1112234444443 3678999999987776655 7999999998 66665
Q ss_pred e--ccccceeeEEE-CCCCCEEEEEE
Q 005140 552 T--AEHFMATDVEW-DPTGRYVATAV 574 (712)
Q Consensus 552 ~--~~~~~v~~~~~-spdg~~l~t~s 574 (712)
. .....+++++| -++.+.|...+
T Consensus 219 ~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 219 EIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred EEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 4 33458899999 47767665544
No 346
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.58 E-value=1.3e-07 Score=81.50 Aligned_cols=80 Identities=26% Similarity=0.356 Sum_probs=67.1
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
..+..+||+||.. +.-|..|.++|+.||.+... =.++.|+.||+++|||||.|++.+.+.+|+..+||..+..
T Consensus 94 ~vganlfvgNLd~------~vDe~~L~dtFsafG~l~~~-P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~n 166 (203)
T KOG0131|consen 94 DVGANLFVGNLDP------EVDEKLLYDTFSAFGVLISP-PKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCN 166 (203)
T ss_pred cccccccccccCc------chhHHHHHHHHHhccccccC-CcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcC
Confidence 3458999999986 44589999999999987541 2577788899999999999999999999999999998887
Q ss_pred ceEEEEEe
Q 005140 137 AHIFAVNM 144 (712)
Q Consensus 137 ~~~l~v~~ 144 (712)
+ .++|.-
T Consensus 167 r-~itv~y 173 (203)
T KOG0131|consen 167 R-PITVSY 173 (203)
T ss_pred C-ceEEEE
Confidence 6 555554
No 347
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.57 E-value=2.5e-05 Score=86.81 Aligned_cols=250 Identities=15% Similarity=0.261 Sum_probs=134.9
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEE
Q 005140 255 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYF 334 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~l 334 (712)
.|.++.|..++..|+.+... |.|.+-|..+....-.-....+.. +.+||| |++.+
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~----------G~iilvd~et~~~eivg~vd~GI~--------------aaswS~-Dee~l 124 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITAL----------GDIILVDPETLELEIVGNVDNGIS--------------AASWSP-DEELL 124 (1265)
T ss_pred ceEEEEEecccceEEEEecC----------CcEEEEcccccceeeeeeccCceE--------------EEeecC-CCcEE
Confidence 48999999999888888888 788888876665322212222222 789999 99999
Q ss_pred EEecCCeEEEEEcCCceeccccccccc-----CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc-cceeeeeee
Q 005140 335 AKLGKNMISVYETESFTLIDKKSLKVE-----NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK-EELRQKNLF 408 (712)
Q Consensus 335 a~~~d~~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~ 408 (712)
+..+.....+....++.++..+.++.+ ..-.+-|-...+.+- |+.+ +.-..+.... +.+... -.
T Consensus 125 ~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfr------gs~g---r~~~~~~~~~ek~~~~~-~~ 194 (1265)
T KOG1920|consen 125 ALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFR------GSEG---RQAARQKIEKEKALEQI-EQ 194 (1265)
T ss_pred EEEeCCcEEEEEeccccchhccccccccccccccceecccccceeee------cchh---hhcccccccccccccch-hh
Confidence 988854444555555555544433221 122223322221221 0010 0000000000 000000 01
Q ss_pred eecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCC
Q 005140 409 SVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRP 488 (712)
Q Consensus 409 ~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~ 488 (712)
......+.|.-||.++++..-..... .-.+.+|+-... ... ..- ...+--.+++|-|.|..+++........
T Consensus 195 ~~~~~~IsWRgDg~~fAVs~~~~~~~----~RkirV~drEg~-Lns--~se-~~~~l~~~LsWkPsgs~iA~iq~~~sd~ 266 (1265)
T KOG1920|consen 195 DDHKTSISWRGDGEYFAVSFVESETG----TRKIRVYDREGA-LNS--TSE-PVEGLQHSLSWKPSGSLIAAIQCKTSDS 266 (1265)
T ss_pred ccCCceEEEccCCcEEEEEEEeccCC----ceeEEEecccch-hhc--ccC-cccccccceeecCCCCeEeeeeecCCCC
Confidence 12234578999999999844321100 012677765411 000 000 1134456799999999999987765555
Q ss_pred eEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcce
Q 005140 489 DISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELE 548 (712)
Q Consensus 489 ~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~ 548 (712)
.|.+|..+.-.. +.+..-.......+..++|+.++..|++.........|++|-+.+..
T Consensus 267 ~IvffErNGL~h-g~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 267 DIVFFERNGLRH-GEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred cEEEEecCCccc-cccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 799998643211 11111111112248999999999999984322215569999988643
No 348
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.56 E-value=2.4e-07 Score=101.82 Aligned_cols=85 Identities=21% Similarity=0.414 Sum_probs=69.9
Q ss_pred CCEEEECCCCCC----CchhhhhhHHHHHHHhhccCeeeeceEEEeccC---CCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 005140 59 GNIIVVDNLPVV----PKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDP---ETQKSLGYCFIEYNTPQEAELAKEKTNG 131 (712)
Q Consensus 59 ~~~~~v~~lp~~----~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~---~~~~~~g~~fv~~~~~~~a~~a~~~~~~ 131 (712)
..+|++.|++.. .++-++.+.++|+++|++||.|.. |.||.+. .++..+|||||+|.+.++|.+|+..|||
T Consensus 409 s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~--v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnG 486 (509)
T TIGR01642 409 TKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLIN--IVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNG 486 (509)
T ss_pred ceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeE--EEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCC
Confidence 568899999743 333455667889999999999999 9999763 4567789999999999999999999999
Q ss_pred CccCCceEEEEEeec
Q 005140 132 YKLDRAHIFAVNMFD 146 (712)
Q Consensus 132 ~~~~~~~~l~v~~~~ 146 (712)
..|+++ .+.+..+.
T Consensus 487 r~~~gr-~v~~~~~~ 500 (509)
T TIGR01642 487 RKFNDR-VVVAAFYG 500 (509)
T ss_pred CEECCe-EEEEEEeC
Confidence 999986 66666544
No 349
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.56 E-value=0.00013 Score=71.61 Aligned_cols=228 Identities=11% Similarity=0.056 Sum_probs=129.8
Q ss_pred eEEEecC-CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEec-CCCCCEE
Q 005140 257 KLIDFSP-GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWG-GGKDKYF 334 (712)
Q Consensus 257 ~~i~~Sp-dg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~dg~~l 334 (712)
.++.|.+ +|.++++-... +.|..|+..++.... +..+. .. .+.+. + ++.++
T Consensus 3 Egp~~d~~~g~l~~~D~~~----------~~i~~~~~~~~~~~~-~~~~~-~~--------------G~~~~~~-~g~l~ 55 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPG----------GRIYRVDPDTGEVEV-IDLPG-PN--------------GMAFDRP-DGRLY 55 (246)
T ss_dssp EEEEEETTTTEEEEEETTT----------TEEEEEETTTTEEEE-EESSS-EE--------------EEEEECT-TSEEE
T ss_pred cceEEECCCCEEEEEEcCC----------CEEEEEECCCCeEEE-EecCC-Cc--------------eEEEEcc-CCEEE
Confidence 3678998 55555555455 789999987765432 32222 22 45666 6 66665
Q ss_pred EEecCCeEEEEEcCCceecccccc-----cccCeeeEEECCCCCeEEEEeecCCCCCCC--eEEEEEecCCccceeeeee
Q 005140 335 AKLGKNMISVYETESFTLIDKKSL-----KVENVMDFSWSPTDPIISLFVPELGGGNQP--ARVSLVQIPSKEELRQKNL 407 (712)
Q Consensus 335 a~~~d~~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~sp~~~~la~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~ 407 (712)
++.. +.+.++|..+++...-... .....+++++.|+|++.++-.... ..... +.|+.++.. .+......
T Consensus 56 v~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~-~~~~~~~g~v~~~~~~-~~~~~~~~- 131 (246)
T PF08450_consen 56 VADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGG-GASGIDPGSVYRIDPD-GKVTVVAD- 131 (246)
T ss_dssp EEET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCB-CTTCGGSEEEEEEETT-SEEEEEEE-
T ss_pred EEEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCC-ccccccccceEEECCC-CeEEEEec-
Confidence 5554 5556668887754322222 233478999999999665422111 11112 788888877 32111111
Q ss_pred eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCccee----EEEecCCCCceEEEEEeeCCCEEEEEEc
Q 005140 408 FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIE----VLELDNKNDKIIAFAWEPKGHRFAVIHG 483 (712)
Q Consensus 408 ~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~----~~~l~~h~~~v~~~~~sp~g~~l~~~~~ 483 (712)
.-...-.+.|+|+|+.|++...... .+..|++...+.... ...+....+..-.+++..+|+.+++...
T Consensus 132 ~~~~pNGi~~s~dg~~lyv~ds~~~--------~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~ 203 (246)
T PF08450_consen 132 GLGFPNGIAFSPDGKTLYVADSFNG--------RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG 203 (246)
T ss_dssp EESSEEEEEEETTSSEEEEEETTTT--------EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET
T ss_pred CcccccceEECCcchheeecccccc--------eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC
Confidence 1112235689999998887554432 144455544333111 1223222334778999999988887776
Q ss_pred CCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEE-ccCCCeEEEEe
Q 005140 484 DSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFW-SPSGRFIVLAG 531 (712)
Q Consensus 484 d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~-spdg~~l~~~~ 531 (712)
.+ .|.+++.+ +. ......++...+++++| -|+.+.|++.+
T Consensus 204 ~~---~I~~~~p~-G~----~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 204 GG---RIVVFDPD-GK----LLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp TT---EEEEEETT-SC----EEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred CC---EEEEECCC-cc----EEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 66 89999875 32 12333344457889999 47777776654
No 350
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.55 E-value=8.7e-08 Score=88.68 Aligned_cols=71 Identities=25% Similarity=0.360 Sum_probs=61.5
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceE
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~ 139 (712)
.++||+|||. +..+..|+.+|++||+|.+ |.|.++ ||||-.++...|..||.+|||+.|++. .
T Consensus 3 ~KLFIGNLp~------~~~~~elr~lFe~ygkVlE--CDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~-n 65 (346)
T KOG0109|consen 3 VKLFIGNLPR------EATEQELRSLFEQYGKVLE--CDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGV-N 65 (346)
T ss_pred cchhccCCCc------ccchHHHHHHHHhhCceEe--eeeecc--------cceEEeecccccHHHHhhcccceecce-E
Confidence 3789999997 5558899999999999999 988765 899999999999999999999999985 6
Q ss_pred EEEEeecc
Q 005140 140 FAVNMFDD 147 (712)
Q Consensus 140 l~v~~~~~ 147 (712)
+.|..-+.
T Consensus 66 InVeaSks 73 (346)
T KOG0109|consen 66 INVEASKS 73 (346)
T ss_pred EEEEeccc
Confidence 66655443
No 351
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.53 E-value=7e-05 Score=73.71 Aligned_cols=287 Identities=13% Similarity=0.133 Sum_probs=146.5
Q ss_pred ceEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCc-ccccCCC
Q 005140 235 GAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSAD-EFAVGGT 313 (712)
Q Consensus 235 ~i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~-~~~~~~~ 313 (712)
.+.|+|.+ +++.+..+...-...+..||||+.+++++.--.....+.+.-.|.+||..+-.....+..+.. ... .
T Consensus 18 rv~viD~d-~~k~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~---~ 93 (342)
T PF06433_consen 18 RVYVIDAD-SGKLLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ---V 93 (342)
T ss_dssp EEEEEETT-TTEEEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-----B
T ss_pred eEEEEECC-CCcEEEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe---e
Confidence 37788988 777777766555666889999999887542200001111124799999988877765544432 110 0
Q ss_pred CCcCCCCcCeEEecCCCCCEEEEec---CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeE
Q 005140 314 GGVAGVSWPVFRWGGGKDKYFAKLG---KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPAR 390 (712)
Q Consensus 314 ~~~~~~~~~~~~~s~~dg~~la~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~ 390 (712)
.. ..+ .+++|. ||+++.... ..+|.|.|+...+.+.. +..++...+-=++...+.+. | +|+...
T Consensus 94 ~~---~~~-~~~ls~-dgk~~~V~N~TPa~SVtVVDl~~~kvv~e--i~~PGC~~iyP~~~~~F~~l-----C-~DGsl~ 160 (342)
T PF06433_consen 94 VP---YKN-MFALSA-DGKFLYVQNFTPATSVTVVDLAAKKVVGE--IDTPGCWLIYPSGNRGFSML-----C-GDGSLL 160 (342)
T ss_dssp S-----GG-GEEE-T-TSSEEEEEEESSSEEEEEEETTTTEEEEE--EEGTSEEEEEEEETTEEEEE-----E-TTSCEE
T ss_pred cc---ccc-ceEEcc-CCcEEEEEccCCCCeEEEEECCCCceeee--ecCCCEEEEEecCCCceEEE-----e-cCCceE
Confidence 00 012 478999 999888776 78899999998877642 34444333322222233332 1 455444
Q ss_pred EEEEecCCccceeeeeeeeecce----eEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcc-eeEEEecC----
Q 005140 391 VSLVQIPSKEELRQKNLFSVSDC----KMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIP-IEVLELDN---- 461 (712)
Q Consensus 391 i~~~~~~~~~~~~~~~~~~~~~~----~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~l~~---- 461 (712)
-..++-.-....+...+|....- ...+...+..+++.+-.+. +.-.++...... .....+..
T Consensus 161 ~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~---------v~~~dlsg~~~~~~~~~~~~t~~e~ 231 (342)
T PF06433_consen 161 TVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGN---------VYSADLSGDSAKFGKPWSLLTDAEK 231 (342)
T ss_dssp EEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSE---------EEEEEETTSSEEEEEEEESS-HHHH
T ss_pred EEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCE---------EEEEeccCCcccccCcccccCcccc
Confidence 33443222211111122221111 1123333444443333322 333333322211 11111100
Q ss_pred ----CCCceEEEEEeeCCCEEEEEEcCC-------CCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEE
Q 005140 462 ----KNDKIIAFAWEPKGHRFAVIHGDS-------PRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVL 529 (712)
Q Consensus 462 ----h~~~v~~~~~sp~g~~l~~~~~d~-------~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~ 529 (712)
..+.-.-+++++..++|.+....+ +...|.+||+.+++ .+..++ .+++.+++.|.+.+=++.
T Consensus 232 ~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k------rv~Ri~l~~~~~Si~Vsqd~~P~L~ 305 (342)
T PF06433_consen 232 ADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK------RVARIPLEHPIDSIAVSQDDKPLLY 305 (342)
T ss_dssp HTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE------EEEEEEEEEEESEEEEESSSS-EEE
T ss_pred ccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCe------EEEEEeCCCccceEEEccCCCcEEE
Confidence 011223367776555555443211 22357777776654 566665 457889999999885544
Q ss_pred EeccCCCceEEEEECCcceeeeecc
Q 005140 530 AGLKGFNGQLEFYNVDELETMATAE 554 (712)
Q Consensus 530 ~~~~~~dg~v~iwd~~~~~~~~~~~ 554 (712)
+.... ++.|.+||..+++.+.+..
T Consensus 306 ~~~~~-~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 306 ALSAG-DGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEETT-TTEEEEEETTT--EEEEE-
T ss_pred EEcCC-CCeEEEEeCcCCcEEeehh
Confidence 32211 7899999999999887643
No 352
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.51 E-value=6.5e-05 Score=79.15 Aligned_cols=287 Identities=11% Similarity=0.051 Sum_probs=148.8
Q ss_pred CcEEEEEecCc-eEEeecccCcceeeeecCCC-e-eEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeec
Q 005140 225 GTYLATVHRQG-AAVWGGANTFNRLMRYAHPQ-V-KLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDF 301 (712)
Q Consensus 225 g~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~-v-~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~ 301 (712)
|..|++++.++ +..+|.. +++.+-++.... + ..+. .++..++.++.+ +.+..+|..+|+.+...
T Consensus 65 ~~~v~v~~~~g~v~a~d~~-tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~----------g~l~ald~~tG~~~W~~ 131 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAE-TGKRLWRVDLDERLSGGVG--ADGGLVFVGTEK----------GEVIALDAEDGKELWRA 131 (377)
T ss_pred CCEEEEECCCCeEEEEEcc-CCcEeeeecCCCCcccceE--EcCCEEEEEcCC----------CEEEEEECCCCcEeeee
Confidence 55666776666 7788887 666665544332 1 2222 256778888888 89999999999988766
Q ss_pred cCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceecccccccccCee-----eEEECCCCCeEE
Q 005140 302 KGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVM-----DFSWSPTDPIIS 376 (712)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~~~v~-----~~~~sp~~~~la 376 (712)
....... .. ... . ++..++...++.|..||..+++.+.........+. ..... +..++
T Consensus 132 ~~~~~~~-----------~~--p~v-~-~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~ 194 (377)
T TIGR03300 132 KLSSEVL-----------SP--PLV-A-NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVL 194 (377)
T ss_pred ccCceee-----------cC--CEE-E-CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEE
Confidence 5432211 01 112 2 44555544599999999999887665433222110 11111 22333
Q ss_pred EEeecCCCCCCCeEEEEEecCCccceeeeeeeee-----------cceeEEECcCCCEEEEEEcccccccccccccEEEE
Q 005140 377 LFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV-----------SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELF 445 (712)
Q Consensus 377 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----------~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~ 445 (712)
+ +.. ...+..++..+.+.+-....... ....... .+..+++...++. +..+
T Consensus 195 ~-----~~~--~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~---------l~a~ 256 (377)
T TIGR03300 195 V-----GFA--GGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGR---------VAAL 256 (377)
T ss_pred E-----ECC--CCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCE---------EEEE
Confidence 3 222 23455666555443222111000 0000011 2345555444433 3333
Q ss_pred EEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEe---CCCceeEEEEcc
Q 005140 446 RIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL---KGKQANALFWSP 522 (712)
Q Consensus 446 ~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~---~~~~v~~l~~sp 522 (712)
+... +...-.... . ....+ ...+.++++++.++ .|..+|..++.. +... .......+..
T Consensus 257 d~~t-G~~~W~~~~---~-~~~~p--~~~~~~vyv~~~~G---~l~~~d~~tG~~------~W~~~~~~~~~~ssp~i-- 318 (377)
T TIGR03300 257 DLRS-GRVLWKRDA---S-SYQGP--AVDDNRLYVTDADG---VVVALDRRSGSE------LWKNDELKYRQLTAPAV-- 318 (377)
T ss_pred ECCC-CcEEEeecc---C-CccCc--eEeCCEEEEECCCC---eEEEEECCCCcE------EEccccccCCccccCEE--
Confidence 3321 111111111 1 11111 23567777777778 899999876542 2222 2222233222
Q ss_pred CCCeEEEEeccCCCceEEEEECCcceeeeecc--ccce-eeEEECCCCCEEEEEEccceeccccEEEE
Q 005140 523 SGRFIVLAGLKGFNGQLEFYNVDELETMATAE--HFMA-TDVEWDPTGRYVATAVTSVHEMENGFNIW 587 (712)
Q Consensus 523 dg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~--~~~v-~~~~~spdg~~l~t~s~~~~~~d~~v~iw 587 (712)
.|..|++++. +|.|+++|..+++.+.... ...+ .+..+. + ..|+.++. ||.+..+
T Consensus 319 ~g~~l~~~~~---~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~-----dG~l~~~ 376 (377)
T TIGR03300 319 VGGYLVVGDF---EGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTR-----DGDLYAF 376 (377)
T ss_pred ECCEEEEEeC---CCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeC-----CceEEEe
Confidence 4668888877 9999999999998886533 2222 223333 2 34677777 7777654
No 353
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=3e-07 Score=93.63 Aligned_cols=73 Identities=26% Similarity=0.418 Sum_probs=64.0
Q ss_pred EEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEEE
Q 005140 62 IVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFA 141 (712)
Q Consensus 62 ~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l~ 141 (712)
|||.||+. +.....|.++|+.||.|.+ |.+..|. .| +||| ||.|++++.|.+|++.+||..+.++ .+.
T Consensus 79 ~~i~nl~~------~~~~~~~~d~f~~~g~ilS--~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~k-ki~ 146 (369)
T KOG0123|consen 79 VFIKNLDE------SIDNKSLYDTFSEFGNILS--CKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGK-KIY 146 (369)
T ss_pred eeecCCCc------ccCcHHHHHHHHhhcCeeE--EEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCC-eeE
Confidence 99999997 3447889999999999999 9999998 66 9999 9999999999999999999999886 555
Q ss_pred EEeec
Q 005140 142 VNMFD 146 (712)
Q Consensus 142 v~~~~ 146 (712)
|....
T Consensus 147 vg~~~ 151 (369)
T KOG0123|consen 147 VGLFE 151 (369)
T ss_pred Eeecc
Confidence 54443
No 354
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.48 E-value=1.2e-06 Score=100.16 Aligned_cols=211 Identities=13% Similarity=0.239 Sum_probs=139.8
Q ss_pred EeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcC
Q 005140 238 VWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVA 317 (712)
Q Consensus 238 iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~ 317 (712)
-|... ......+-+.++|.++.=+|...+-+||+.| |.|++|.-..+..+..+....... ++
T Consensus 2194 tq~~~-~~~~~~k~~v~~v~r~~sHp~~~~Yltgs~d----------gsv~~~~w~~~~~v~~~rt~g~s~-------vt 2255 (2439)
T KOG1064|consen 2194 TQTSR-GASVMIKHPVENVRRMTSHPSDPYYLTGSQD----------GSVRMFEWGHGQQVVCFRTAGNSR-------VT 2255 (2439)
T ss_pred ceecc-cceeEeecccCceeeecCCCCCceEEecCCC----------ceEEEEeccCCCeEEEeeccCcch-------hh
Confidence 45555 4444555556679999999999999999999 999999988888777665432211 11
Q ss_pred CCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEec
Q 005140 318 GVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQI 396 (712)
Q Consensus 318 ~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~ 396 (712)
.+.|+. .|+-+..+. ||.+.+|.+...-. .....|..+..++.|-. ..+++ ++.
T Consensus 2256 -----r~~f~~-qGnk~~i~d~dg~l~l~q~~pk~~-~s~qchnk~~~Df~Fi~--s~~~t-----ag~----------- 2310 (2439)
T KOG1064|consen 2256 -----RSRFNH-QGNKFGIVDGDGDLSLWQASPKPY-TSWQCHNKALSDFRFIG--SLLAT-----AGR----------- 2310 (2439)
T ss_pred -----hhhhcc-cCCceeeeccCCceeecccCCcce-eccccCCccccceeeee--hhhhc-----ccc-----------
Confidence 468888 777666665 99999999873222 22224444556666543 33333 110
Q ss_pred CCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCC
Q 005140 397 PSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGH 476 (712)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~ 476 (712)
++++.. +.+|+........ ..-..|.+.++++++.|..+
T Consensus 2311 ---------------------s~d~~n------------------~~lwDtl~~~~~s--~v~~~H~~gaT~l~~~P~~q 2349 (2439)
T KOG1064|consen 2311 ---------------------SSDNRN------------------VCLWDTLLPPMNS--LVHTCHDGGATVLAYAPKHQ 2349 (2439)
T ss_pred ---------------------CCCCCc------------------ccchhcccCcccc--eeeeecCCCceEEEEcCcce
Confidence 222221 2333332221111 11147899999999999999
Q ss_pred EEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee
Q 005140 477 RFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT 552 (712)
Q Consensus 477 ~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~ 552 (712)
.|++|+.+| .|++||++..+ ++++++. +. ...++++++. .|.++||++....++.+
T Consensus 2350 llisggr~G---~v~l~D~rqrq------l~h~~~~-------~~-~~~~f~~~ss---~g~ikIw~~s~~~ll~~ 2405 (2439)
T KOG1064|consen 2350 LLISGGRKG---EVCLFDIRQRQ------LRHTFQA-------LD-TREYFVTGSS---EGNIKIWRLSEFGLLHT 2405 (2439)
T ss_pred EEEecCCcC---cEEEeehHHHH------HHHHhhh-------hh-hhheeeccCc---ccceEEEEccccchhhc
Confidence 999999999 99999997654 3333322 33 4567888887 99999999998777765
No 355
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=1.9e-07 Score=88.67 Aligned_cols=84 Identities=26% Similarity=0.324 Sum_probs=73.3
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||-.|--|++ .++|.-||+.||.|.. |.+..|..||-+.-||||+|++.++.++|.-.|++.-++.+
T Consensus 238 PeNVLFVCKLNPVTt------DeDLeiIFSrFG~i~s--ceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDr 309 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTT------DEDLEIIFSRFGKIVS--CEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDR 309 (479)
T ss_pred CcceEEEEecCCccc------ccchhhHHhhccccee--eeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccc
Confidence 468999999987666 6789999999999999 99999999999999999999999999999999999999986
Q ss_pred eEEEEEeeccccc
Q 005140 138 HIFAVNMFDDFDK 150 (712)
Q Consensus 138 ~~l~v~~~~~~~~ 150 (712)
.+.|-.-..+.+
T Consensus 310 -RIHVDFSQSVsk 321 (479)
T KOG0415|consen 310 -RIHVDFSQSVSK 321 (479)
T ss_pred -eEEeehhhhhhh
Confidence 555555444444
No 356
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.45 E-value=1.7e-06 Score=90.43 Aligned_cols=287 Identities=13% Similarity=0.196 Sum_probs=166.2
Q ss_pred hccCCCCCceEEEEECCeeEEEecCCCCCCCcccc-cCCCcccceEEEcCCC---cEEEEEecCceEEeecccCcceeee
Q 005140 175 WLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVY-KRSYWTESFVQWSPLG---TYLATVHRQGAAVWGGANTFNRLMR 250 (712)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~v~~v~~Spdg---~~lat~~~~~i~iw~~~~~~~~~~~ 250 (712)
....|-||++.++.. -+.. +-+....+.+-+-+ .-..|.|-.++|||.. .++++.+....++|++.........
T Consensus 30 ~si~p~grdi~lAsr-~gl~-i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIe 107 (1081)
T KOG0309|consen 30 VSINPSGRDIVLASR-QGLY-IIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIE 107 (1081)
T ss_pred eeeccccchhhhhhh-cCeE-EEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceE
Confidence 345567787744332 2222 22222333333322 2234888899999864 4688888888889987522222222
Q ss_pred e---cCC-CeeEEEecCCC-CEEEEEcCCCCCCCcCCCccEEEEEEccCCc-eeeeccCCCcccccCCCCCcCCCCcCeE
Q 005140 251 Y---AHP-QVKLIDFSPGE-KYLVTYSSHEPSNPRDANRVVINIFDVRTGK-VMRDFKGSADEFAVGGTGGVAGVSWPVF 324 (712)
Q Consensus 251 ~---~~~-~v~~i~~Spdg-~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (712)
| .|. +|+.+.|.|.. ..|++++.+ ..+..||+++-. .+..+..-..... .+
T Consensus 108 f~lhghsraitd~n~~~q~pdVlatcsvd----------t~vh~wd~rSp~~p~ys~~~w~s~as-------------qV 164 (1081)
T KOG0309|consen 108 FVLHGHSRAITDINFNPQHPDVLATCSVD----------TYVHAWDMRSPHRPFYSTSSWRSAAS-------------QV 164 (1081)
T ss_pred EEEecCccceeccccCCCCCcceeecccc----------ccceeeeccCCCcceeeeecccccCc-------------ee
Confidence 2 343 49999999976 578899999 789999987653 3333332221111 57
Q ss_pred EecCCCCCEEEEecCCeEEEEEcCCce-ecccccccccCeeeEEECCCC-CeEEEEeecCCCCCCCeEEEEEecCCccce
Q 005140 325 RWGGGKDKYFAKLGKNMISVYETESFT-LIDKKSLKVENVMDFSWSPTD-PIISLFVPELGGGNQPARVSLVQIPSKEEL 402 (712)
Q Consensus 325 ~~s~~dg~~la~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~sp~~-~~la~~~~~~~~~~~~~~i~~~~~~~~~~~ 402 (712)
+|+..++..+|+...+.|.+||+..|. .+.....+...|+.++|..-- ..+.. ++.++.++.|.|+-.+...-
T Consensus 165 kwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s-----~~~d~tvkfw~y~kSt~e~~ 239 (1081)
T KOG0309|consen 165 KWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMS-----SSNDGTVKFWDYSKSTTESK 239 (1081)
T ss_pred eecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcc-----cCCCCceeeecccccccccc
Confidence 888757778888779999999998654 444444577777777776542 23333 55788888888876654322
Q ss_pred eeeeeeeecceeEEECcCCCEEEEEEcccccc--cccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCC----
Q 005140 403 RQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKT--KKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGH---- 476 (712)
Q Consensus 403 ~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~---- 476 (712)
+..+ .......-.+-|-|.-.++.-..+... ..........|.... .+.....+.||.+.|..+.|-..+.
T Consensus 240 ~~vt-t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~--~~~pVh~F~GH~D~V~eFlWR~r~e~~~d 316 (1081)
T KOG0309|consen 240 RTVT-TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFD--LNTPVHTFVGHDDVVLEFLWRKRKECDGD 316 (1081)
T ss_pred eecc-ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhcccc--CCcceeeecCcchHHHHHhhhhcccccCC
Confidence 2111 011111222344444332222211100 000000011222222 2233467789999999998865433
Q ss_pred ------EEEEEEcCCCCCeEEEEEeec
Q 005140 477 ------RFAVIHGDSPRPDISFYSMRT 497 (712)
Q Consensus 477 ------~l~~~~~d~~~~~v~i~d~~~ 497 (712)
.|++-+.|. ++++|.+.+
T Consensus 317 ~d~rdfQLVTWSkD~---~lrlWpI~~ 340 (1081)
T KOG0309|consen 317 YDSRDFQLVTWSKDQ---TLRLWPIDS 340 (1081)
T ss_pred CCccceeEEEeecCC---ceEeeeccH
Confidence 688888898 999999865
No 357
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.45 E-value=1.9e-07 Score=97.33 Aligned_cols=75 Identities=25% Similarity=0.468 Sum_probs=68.2
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.++|.|.|||. .+....+++||..||+|.. |.+|.-...+.++|||||+|-++.+|.+|++.|.++.|-|+|
T Consensus 613 ~tKIlVRNipF------eAt~rEVr~LF~aFGqlks--vRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRr 684 (725)
T KOG0110|consen 613 GTKILVRNIPF------EATKREVRKLFTAFGQLKS--VRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRR 684 (725)
T ss_pred cceeeeeccch------HHHHHHHHHHHhcccceee--eccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechh
Confidence 67999999999 7779999999999999999 999998667888999999999999999999999999999875
Q ss_pred EEE
Q 005140 139 IFA 141 (712)
Q Consensus 139 ~l~ 141 (712)
...
T Consensus 685 LVL 687 (725)
T KOG0110|consen 685 LVL 687 (725)
T ss_pred hhe
Confidence 433
No 358
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.44 E-value=5.6e-05 Score=70.99 Aligned_cols=232 Identities=13% Similarity=0.170 Sum_probs=133.8
Q ss_pred EEecCC--CCC-EEEEec-CCeEEEEEcCCce------ecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEE
Q 005140 324 FRWGGG--KDK-YFAKLG-KNMISVYETESFT------LIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSL 393 (712)
Q Consensus 324 ~~~s~~--dg~-~la~~~-d~~i~iwd~~~~~------~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~ 393 (712)
+.|+.. +|. .++-+. .|.|.+|...... .+..+.+...-..++.|++.+..+++ .+..+.+..
T Consensus 75 m~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~v-------s~s~G~~~~ 147 (339)
T KOG0280|consen 75 MLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFV-------SDSRGSISG 147 (339)
T ss_pred eeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEE-------EcCCCcEEE
Confidence 555431 444 233333 8899998765221 11111111112457789999888877 333333333
Q ss_pred EecCCc--cceeeeeeeeecceeEEECcC-CCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEE
Q 005140 394 VQIPSK--EELRQKNLFSVSDCKMYWQSS-GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFA 470 (712)
Q Consensus 394 ~~~~~~--~~~~~~~~~~~~~~~~~~s~~-g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~ 470 (712)
...... +.+.....+........|+.. -+.+.++++|+. +..|+++..+.-+.. ...-|...|.++.
T Consensus 148 v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~---------l~~~D~R~p~~~i~~-n~kvH~~GV~SI~ 217 (339)
T KOG0280|consen 148 VYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGS---------LSCWDIRIPKTFIWH-NSKVHTSGVVSIY 217 (339)
T ss_pred EecceeeeeecccccccceeeeeeecccCCCceEEecCCCce---------EEEEEecCCcceeee-cceeeecceEEEe
Confidence 332221 222233333333333334432 257777888876 788888843322111 1224678888888
Q ss_pred Eee-CCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCC--CeEEEEeccCCCceEEEEECCc
Q 005140 471 WEP-KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSG--RFIVLAGLKGFNGQLEFYNVDE 546 (712)
Q Consensus 471 ~sp-~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg--~~l~~~~~~~~dg~v~iwd~~~ 546 (712)
-+| .+.++++|+.|. .|++||.+.... ++..-. ++.|.-+.++|.- +.|+++. -.-.+|.+.+.
T Consensus 218 ss~~~~~~I~TGsYDe---~i~~~DtRnm~k-----Pl~~~~v~GGVWRi~~~p~~~~~lL~~CM----h~G~ki~~~~~ 285 (339)
T KOG0280|consen 218 SSPPKPTYIATGSYDE---CIRVLDTRNMGK-----PLFKAKVGGGVWRIKHHPEIFHRLLAACM----HNGAKILDSSD 285 (339)
T ss_pred cCCCCCceEEEecccc---ceeeeehhcccC-----ccccCccccceEEEEecchhhhHHHHHHH----hcCceEEEecc
Confidence 877 688999999998 899999986443 343332 4578999999953 3344433 33455655542
Q ss_pred c--e-----eeeeccccceeeEEECCCCCEEEEEEccceeccccEE-EEE
Q 005140 547 L--E-----TMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFN-IWS 588 (712)
Q Consensus 547 ~--~-----~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~-iw~ 588 (712)
. + ...+.|.+.+..-.|.....+|||++.. |+.++ +|-
T Consensus 286 ~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFY----Dk~~~~~Wl 331 (339)
T KOG0280|consen 286 KVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFY----DKKIRQLWL 331 (339)
T ss_pred cccchheeeeccccccceeeccccccccceeeeeecc----ccceeeeee
Confidence 1 1 1234677788888897777789998875 66644 674
No 359
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.42 E-value=1.3e-06 Score=69.39 Aligned_cols=77 Identities=23% Similarity=0.423 Sum_probs=59.9
Q ss_pred CEEEECCCC-CCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 60 NIIVVDNLP-VVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 60 ~~~~v~~lp-~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
++|-+.||| ..+. +.|.+.|.+.| .|..-- ++||.|-.++.+.|||||.|.+++.|.+-.+.++|..+....
T Consensus 2 TTvMirNIPn~~t~---~~L~~~l~~~~--~g~yDF--~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~ 74 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQ---EMLIQILDEHF--KGKYDF--FYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFN 74 (97)
T ss_pred eeEEEecCCCCCCH---HHHHHHHHHhc--cCcceE--EEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCC
Confidence 589999999 4554 44555555544 366666 999999999999999999999999999999999999886443
Q ss_pred EEEEE
Q 005140 139 IFAVN 143 (712)
Q Consensus 139 ~l~v~ 143 (712)
.-+++
T Consensus 75 s~Kvc 79 (97)
T PF04059_consen 75 SKKVC 79 (97)
T ss_pred CCcEE
Confidence 33333
No 360
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.42 E-value=0.00013 Score=77.77 Aligned_cols=95 Identities=16% Similarity=0.290 Sum_probs=65.0
Q ss_pred eEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCccee------------eeecc-
Q 005140 489 DISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET------------MATAE- 554 (712)
Q Consensus 489 ~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~------------~~~~~- 554 (712)
.|.+.|..+... .....+..++ +.....+.+||||+++++++. .+.++.|+|+.+.+. .....
T Consensus 297 ~V~VID~~t~~~-~~~~v~~yIPVGKsPHGV~vSPDGkylyVank--lS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev 373 (635)
T PRK02888 297 KVPVVDGRKAAN-AGSALTRYVPVPKNPHGVNTSPDGKYFIANGK--LSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL 373 (635)
T ss_pred EEEEEECCcccc-CCcceEEEEECCCCccceEECCCCCEEEEeCC--CCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence 688888765100 0012444444 456788999999999998875 389999999987553 22221
Q ss_pred ccceeeEEECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 555 HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 555 ~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
.......+|+++|....+... |..+-.|++..
T Consensus 374 GlGPLHTaFDg~G~aytslf~-----dsqv~kwn~~~ 405 (635)
T PRK02888 374 GLGPLHTAFDGRGNAYTTLFL-----DSQIVKWNIEA 405 (635)
T ss_pred CCCcceEEECCCCCEEEeEee-----cceeEEEehHH
Confidence 234457899999986666666 89999999764
No 361
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.41 E-value=0.0001 Score=68.30 Aligned_cols=221 Identities=9% Similarity=0.067 Sum_probs=132.0
Q ss_pred CCCEEEEec-CCeEEEEEcCCceeccc-ccccccCee---eEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccce-e
Q 005140 330 KDKYFAKLG-KNMISVYETESFTLIDK-KSLKVENVM---DFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEEL-R 403 (712)
Q Consensus 330 dg~~la~~~-d~~i~iwd~~~~~~~~~-~~~~~~~v~---~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~-~ 403 (712)
...+||.++ .|...+|...+....-. ...+..+|. ..+-+. .-+.. ++.+.++++..++..+.+.. .
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~--~~~~i-----~sndht~k~~~~~~~s~~~~~h 155 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLK--FPLNI-----ASNDHTGKTMVVSGDSNKFAVH 155 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccc--cceee-----ccCCcceeEEEEecCcccceee
Confidence 455788886 89999999875543211 111222221 111111 11222 55788888888877664422 1
Q ss_pred eeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEc
Q 005140 404 QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG 483 (712)
Q Consensus 404 ~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~ 483 (712)
..+ .....++.+++++++++..+... +-+|.++..+.....+.+....+.-.+..|+.....||++..
T Consensus 156 ~~~---~~~ns~~~snd~~~~~~Vgds~~---------Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Q 223 (344)
T KOG4532|consen 156 NQN---LTQNSLHYSNDPSWGSSVGDSRR---------VFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQ 223 (344)
T ss_pred ccc---cceeeeEEcCCCceEEEecCCCc---------ceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEec
Confidence 111 22334578999999988776554 567777766655544445444566677899999999999999
Q ss_pred CCCCCeEEEEEeecccccCcee-EEEEeCCCceeEEEEccCCC--eEEEEeccCCCceEEEEECCcceeeee--------
Q 005140 484 DSPRPDISFYSMRTAQHAGRVS-KLTTLKGKQANALFWSPSGR--FIVLAGLKGFNGQLEFYNVDELETMAT-------- 552 (712)
Q Consensus 484 d~~~~~v~i~d~~~~~~~~~~~-~~~~~~~~~v~~l~~spdg~--~l~~~~~~~~dg~v~iwd~~~~~~~~~-------- 552 (712)
|| .+.|||++......... ..+.-+.+.+..+.|||-|. +|+..-. -+.+.+.|++++.-...
T Consensus 224 dg---~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEh---fs~~hv~D~R~~~~~q~I~i~~d~~ 297 (344)
T KOG4532|consen 224 DG---TCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEH---FSRVHVVDTRNYVNHQVIVIPDDVE 297 (344)
T ss_pred CC---cEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecC---cceEEEEEcccCceeeEEecCcccc
Confidence 99 99999998654311000 01111244688899998764 3444433 68899999987654322
Q ss_pred -ccc-cceeeEEECCCCCEEEEEEc
Q 005140 553 -AEH-FMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 553 -~~~-~~v~~~~~spdg~~l~t~s~ 575 (712)
.|. ..+....|+.++..+.+.+.
T Consensus 298 ~~~~tq~ifgt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 298 RKHNTQHIFGTNFNNENESNDVKNE 322 (344)
T ss_pred ccccccccccccccCCCcccccccc
Confidence 111 22555666666655544443
No 362
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.38 E-value=0.00026 Score=75.60 Aligned_cols=258 Identities=12% Similarity=0.061 Sum_probs=137.0
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeec-cCCCcccccCCCCCcCCCCcCeEEecCCCCCEE
Q 005140 256 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDF-KGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYF 334 (712)
Q Consensus 256 v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~l 334 (712)
+..+.+||||++||.+-... ++...+|+++|+.+|+.+... ...... .+.|++ |++.|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~-----G~e~~~l~v~Dl~tg~~l~d~i~~~~~~---------------~~~W~~-d~~~~ 184 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDG-----GSEWYTLRVFDLETGKFLPDGIENPKFS---------------SVSWSD-DGKGF 184 (414)
T ss_dssp EEEEEETTTSSEEEEEEEET-----TSSEEEEEEEETTTTEEEEEEEEEEESE---------------EEEECT-TSSEE
T ss_pred eeeeeECCCCCEEEEEecCC-----CCceEEEEEEECCCCcCcCCcccccccc---------------eEEEeC-CCCEE
Confidence 44688999999998664331 112267999999999776532 221111 389999 98877
Q ss_pred EEec-CC-----------eEEEEEcCCceecccccccc---cC-eeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCC
Q 005140 335 AKLG-KN-----------MISVYETESFTLIDKKSLKV---EN-VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS 398 (712)
Q Consensus 335 a~~~-d~-----------~i~iwd~~~~~~~~~~~~~~---~~-v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~ 398 (712)
+... +. .|..|.+.+...-....... .. ...+..++++++|++..... .+ ...+|+.+...
T Consensus 185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~--~~-~s~v~~~d~~~ 261 (414)
T PF02897_consen 185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSG--TS-ESEVYLLDLDD 261 (414)
T ss_dssp EEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESS--SS-EEEEEEEECCC
T ss_pred EEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcc--cc-CCeEEEEeccc
Confidence 6655 22 25666665443221121211 12 56788999999988754332 22 47888888876
Q ss_pred c----cceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcc--eeEEEecCCCCceEEEEEe
Q 005140 399 K----EELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIP--IEVLELDNKNDKIIAFAWE 472 (712)
Q Consensus 399 ~----~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~l~~h~~~v~~~~~s 472 (712)
. ......... ...........|..+.+.++.+. ....|+.+...... .....+..|...+.--.++
T Consensus 262 ~~~~~~~~~~l~~~-~~~~~~~v~~~~~~~yi~Tn~~a-------~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~ 333 (414)
T PF02897_consen 262 GGSPDAKPKLLSPR-EDGVEYYVDHHGDRLYILTNDDA-------PNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS 333 (414)
T ss_dssp TTTSS-SEEEEEES-SSS-EEEEEEETTEEEEEE-TT--------TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE
T ss_pred cCCCcCCcEEEeCC-CCceEEEEEccCCEEEEeeCCCC-------CCcEEEEecccccccccceeEEcCCCCceeEEEEE
Confidence 4 111111111 11111112222555555555432 12355655543322 1122344556544444556
Q ss_pred eCCCEEEEEEcCCCCCeEEEEEee-cccccCceeEEEEeC-CCceeEEEEccCCCeEEEEecc-CCCceEEEEECCccee
Q 005140 473 PKGHRFAVIHGDSPRPDISFYSMR-TAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLK-GFNGQLEFYNVDELET 549 (712)
Q Consensus 473 p~g~~l~~~~~d~~~~~v~i~d~~-~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~-~~dg~v~iwd~~~~~~ 549 (712)
..+++|++....+....|+++++. +... ....+. .+.+..+...+++..+.+...+ ...++++-||+.+++.
T Consensus 334 ~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~-----~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 334 LFKDYLVLSYRENGSSRLRVYDLDDGKES-----REIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EETTEEEEEEEETTEEEEEEEETT-TEEE-----EEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EECCEEEEEEEECCccEEEEEECCCCcEE-----eeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 677888888776666689999986 2211 222222 3345566656666655443321 2367888999987765
Q ss_pred e
Q 005140 550 M 550 (712)
Q Consensus 550 ~ 550 (712)
.
T Consensus 409 ~ 409 (414)
T PF02897_consen 409 T 409 (414)
T ss_dssp E
T ss_pred E
Confidence 3
No 363
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.36 E-value=1.4e-06 Score=91.01 Aligned_cols=78 Identities=21% Similarity=0.382 Sum_probs=65.1
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCC---CCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPET---QKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~---~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
+.|||.||++.+ ..+.|...|.+.|.|.. +.|++-+.. -.|.|||||+|.++++|..|++.|+|+.|+|
T Consensus 516 t~lfvkNlnf~T------t~e~l~~~F~k~G~VlS--~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldG 587 (725)
T KOG0110|consen 516 TKLFVKNLNFDT------TLEDLEDLFSKQGTVLS--IEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDG 587 (725)
T ss_pred hhhhhhcCCccc------chhHHHHHHHhcCeEEE--EEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecC
Confidence 449999999844 37889999999999999 888776522 1356999999999999999999999999998
Q ss_pred ceEEEEEeec
Q 005140 137 AHIFAVNMFD 146 (712)
Q Consensus 137 ~~~l~v~~~~ 146 (712)
|.+.+....
T Consensus 588 -H~l~lk~S~ 596 (725)
T KOG0110|consen 588 -HKLELKISE 596 (725)
T ss_pred -ceEEEEecc
Confidence 788877643
No 364
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.36 E-value=6.3e-07 Score=81.79 Aligned_cols=83 Identities=24% Similarity=0.316 Sum_probs=67.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc-CC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL-DR 136 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~-~~ 136 (712)
-++++||+-|-+ ...|++++++|..||.|.+ |.+-..+ .|.+||.|||.|.+.-+|..||..|+|... -|
T Consensus 18 ~drklfvgml~k------qq~e~dvrrlf~pfG~~~e--~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpG 88 (371)
T KOG0146|consen 18 DDRKLFVGMLNK------QQSEDDVRRLFQPFGNIEE--CTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPG 88 (371)
T ss_pred cchhhhhhhhcc------cccHHHHHHHhcccCCcce--eEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCC
Confidence 456899999998 5559999999999999999 9998888 899999999999999999999999999643 33
Q ss_pred ceEEEEEeecccc
Q 005140 137 AHIFAVNMFDDFD 149 (712)
Q Consensus 137 ~~~l~v~~~~~~~ 149 (712)
-..-.|-.+.|-+
T Consensus 89 ASSSLVVK~ADTd 101 (371)
T KOG0146|consen 89 ASSSLVVKFADTD 101 (371)
T ss_pred CccceEEEeccch
Confidence 2233344444433
No 365
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.35 E-value=1.5e-05 Score=75.12 Aligned_cols=257 Identities=12% Similarity=0.188 Sum_probs=148.5
Q ss_pred eEEecCCCCCEEEEec-CCeEEEEEcCCce-----eccccccc------------ccCeeeEEECCCCC--eEEEEeecC
Q 005140 323 VFRWGGGKDKYFAKLG-KNMISVYETESFT-----LIDKKSLK------------VENVMDFSWSPTDP--IISLFVPEL 382 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~-d~~i~iwd~~~~~-----~~~~~~~~------------~~~v~~~~~sp~~~--~la~~~~~~ 382 (712)
++.|.. .|.|++++. .|.|.+|.-.... .......| ...|..+.|..++. .+++
T Consensus 31 aVefd~-tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl----- 104 (460)
T COG5170 31 AVEFDE-TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL----- 104 (460)
T ss_pred EEEecc-ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE-----
Confidence 688888 999999999 8999998755322 11111111 12477888876642 3333
Q ss_pred CCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcce----eEEE
Q 005140 383 GGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPI----EVLE 458 (712)
Q Consensus 383 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~----~~~~ 458 (712)
.+.+.++++|.+--...+.+...++...- + +|-|.-+.+. ..+.+=++.....-+ ..+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~----~-~~~~g~~~s~------------~~l~lprls~hd~iiaa~p~rvy 167 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSF----H-SPMGGPLTST------------KELLLPRLSEHDEIIAAKPCRVY 167 (460)
T ss_pred ecCCceeeeeeeecccchhhhcccccccc----c-cccCCCcCCH------------HHhhcccccccceEEEeccceec
Confidence 45788888887765555554444332211 1 1211111000 001111111110000 0112
Q ss_pred ecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC-------ceeEEEEccCCCeEEE-E
Q 005140 459 LDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK-------QANALFWSPSGRFIVL-A 530 (712)
Q Consensus 459 l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-------~v~~l~~spdg~~l~~-~ 530 (712)
-..|...|.+++++.|...++++. +- .|.+|++.-..+.. .+-.+..+ .|++..|+|....++. .
T Consensus 168 aNaH~yhiNSiS~NsD~et~lSaD-dL---rINLWnl~i~D~sF---nIVDiKP~nmeeLteVItSaeFhp~~cn~fmYS 240 (460)
T COG5170 168 ANAHPYHINSISFNSDKETLLSAD-DL---RINLWNLEIIDGSF---NIVDIKPHNMEELTEVITSAEFHPEMCNVFMYS 240 (460)
T ss_pred cccceeEeeeeeecCchheeeecc-ce---eeeeccccccCCce---EEEeccCccHHHHHHHHhhcccCHhHcceEEEe
Confidence 236788899999998888777654 33 68899986544321 12223222 3688899997554433 3
Q ss_pred eccCCCceEEEEECCccee------e-e-----------eccccceeeEEECCCCCEEEEEEccceeccccEEEEEec--
Q 005140 531 GLKGFNGQLEFYNVDELET------M-A-----------TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-- 590 (712)
Q Consensus 531 ~~~~~dg~v~iwd~~~~~~------~-~-----------~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-- 590 (712)
+. .|.|++-|++...+ + . +.-...|+++.|+++|+||++-+. .+++|||.+
T Consensus 241 sS---kG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy------ltvkiwDvnm~ 311 (460)
T COG5170 241 SS---KGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY------LTVKIWDVNMA 311 (460)
T ss_pred cC---CCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc------ceEEEEecccc
Confidence 33 79999999873211 1 0 011256789999999999999887 899999986
Q ss_pred Cceeeeecc--------------cce---eeeEEecCCCCCCChh
Q 005140 591 GKLLYRTLK--------------DHF---FQFLWRPRPPSFLTPE 618 (712)
Q Consensus 591 g~~~~~~~~--------------~~i---~~~~w~p~~~~l~s~~ 618 (712)
...+.+.+. +.| ..+.||-+...+++++
T Consensus 312 k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgs 356 (460)
T COG5170 312 KNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGS 356 (460)
T ss_pred cCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccc
Confidence 344444311 222 3477888887877776
No 366
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.34 E-value=4.5e-06 Score=87.34 Aligned_cols=299 Identities=9% Similarity=0.168 Sum_probs=174.2
Q ss_pred Ccceeeeec-CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC-CceeeeccCCCcccccCCCCCcCCCCc
Q 005140 244 TFNRLMRYA-HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT-GKVMRDFKGSADEFAVGGTGGVAGVSW 321 (712)
Q Consensus 244 ~~~~~~~~~-~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (712)
++.+...+. ..++..+.++|.|+-+|.++.. | +.+.|+.. +.+.+-+..-.... .
T Consensus 14 tf~kslsl~v~~~~~a~si~p~grdi~lAsr~----------g-l~i~dld~p~~ppr~l~h~tpw~--------v---- 70 (1081)
T KOG0309|consen 14 TFGKSLSLKVDGGFNAVSINPSGRDIVLASRQ----------G-LYIIDLDDPFTPPRWLHHITPWQ--------V---- 70 (1081)
T ss_pred ccCceeEEEecCcccceeeccccchhhhhhhc----------C-eEEEeccCCCCCceeeeccCcch--------h----
Confidence 444444444 3458899999999999999888 5 55667643 23322222111111 0
Q ss_pred CeEEecCC--CCCEEEEecCCeEEEEEcCCc--eec-ccccccccCeeeEEECCCCCe-EEEEeecCCCCCCCeEEEEEe
Q 005140 322 PVFRWGGG--KDKYFAKLGKNMISVYETESF--TLI-DKKSLKVENVMDFSWSPTDPI-ISLFVPELGGGNQPARVSLVQ 395 (712)
Q Consensus 322 ~~~~~s~~--dg~~la~~~d~~i~iwd~~~~--~~~-~~~~~~~~~v~~~~~sp~~~~-la~~~~~~~~~~~~~~i~~~~ 395 (712)
...+|||+ -...+++.+...-.+|++... +.+ --+..|..+|+++.|+|...- +++ ++.+..+..|...
T Consensus 71 ad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlat-----csvdt~vh~wd~r 145 (1081)
T KOG0309|consen 71 ADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLAT-----CSVDTYVHAWDMR 145 (1081)
T ss_pred cceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceee-----ccccccceeeecc
Confidence 04678774 233566666666678887522 222 123356678999999998654 455 5566666666554
Q ss_pred cCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee-C
Q 005140 396 IPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-K 474 (712)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~ 474 (712)
.+.. ++...........++.|+-....+.+.+.... +.+|+++..+.|. ..+.+|...|+.++|.. .
T Consensus 146 Sp~~-p~ys~~~w~s~asqVkwnyk~p~vlasshg~~---------i~vwd~r~gs~pl--~s~K~~vs~vn~~~fnr~~ 213 (1081)
T KOG0309|consen 146 SPHR-PFYSTSSWRSAASQVKWNYKDPNVLASSHGND---------IFVWDLRKGSTPL--CSLKGHVSSVNSIDFNRFK 213 (1081)
T ss_pred CCCc-ceeeeecccccCceeeecccCcchhhhccCCc---------eEEEeccCCCcce--EEecccceeeehHHHhhhh
Confidence 4432 22222223334445677754444444443333 7899998877775 44556778888888765 3
Q ss_pred CCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcc------
Q 005140 475 GHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL------ 547 (712)
Q Consensus 475 g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~------ 547 (712)
-..+.+.+.|+ +|++|+....... .-+.+. ..++.-..+-|-|.-.++--... +..+.+++.++.
T Consensus 214 ~s~~~s~~~d~---tvkfw~y~kSt~e----~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G-~n~v~~~~c~n~d~e~n~ 285 (1081)
T KOG0309|consen 214 YSEIMSSSNDG---TVKFWDYSKSTTE----SKRTVTTNFPIWRGRYLPFGEGYCIMPMVG-GNMVPQLRCENSDLEWNV 285 (1081)
T ss_pred hhhhcccCCCC---ceeeecccccccc----cceeccccCcceeccccccCceeEeccccC-Ceeeeeccccchhhhhcc
Confidence 34566777888 9999998653322 222222 33566667777665443322100 234444544421
Q ss_pred ----eeee--eccccceeeEEECCCCC----------EEEEEEccceeccccEEEEEecCceee
Q 005140 548 ----ETMA--TAEHFMATDVEWDPTGR----------YVATAVTSVHEMENGFNIWSFNGKLLY 595 (712)
Q Consensus 548 ----~~~~--~~~~~~v~~~~~spdg~----------~l~t~s~~~~~~d~~v~iw~~~g~~~~ 595 (712)
+.+. .+|...|..+.|-..+. .|+|.+. |..+++|-+....+.
T Consensus 286 ~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSk-----D~~lrlWpI~~~i~~ 344 (1081)
T KOG0309|consen 286 FDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSK-----DQTLRLWPIDSQIQR 344 (1081)
T ss_pred ccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeec-----CCceEeeeccHHHHH
Confidence 1222 36666776666654332 6899999 999999998765443
No 367
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.32 E-value=1.2e-05 Score=78.63 Aligned_cols=157 Identities=14% Similarity=0.200 Sum_probs=99.3
Q ss_pred EECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEe
Q 005140 416 YWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSM 495 (712)
Q Consensus 416 ~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~ 495 (712)
..++.|+++|++..... ..++.+..............-...-+++.+..+.....++..-|....+.+|..
T Consensus 69 ~~s~~~~llAv~~~~K~---------~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 69 LTSDSGRLVAVATSSKQ---------RAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred ccCCCceEEEEEeCCCc---------eEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence 35788888888877654 345555543321111111111333444555555555555555442224555554
Q ss_pred ecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceee---eeccccceeeEEECCCCCEE
Q 005140 496 RTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETM---ATAEHFMATDVEWDPTGRYV 570 (712)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~---~~~~~~~v~~~~~spdg~~l 570 (712)
..+. ....+ +| .+..++||||+++|+++.. |..|++-.+...-.+ ..+|..-|..++.-++ ..|
T Consensus 140 ~~~~------~~~~l-GhvSml~dVavS~D~~~IitaDR---DEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~L 208 (390)
T KOG3914|consen 140 DSGR------CEPIL-GHVSMLLDVAVSPDDQFIITADR---DEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLL 208 (390)
T ss_pred cccC------cchhh-hhhhhhheeeecCCCCEEEEecC---CceEEEEecCcccchhhhccccHhheeeeeeccC-cee
Confidence 3321 11112 33 5789999999999999998 999999887744433 3478888999998875 458
Q ss_pred EEEEccceeccccEEEEEec-Cceeeee
Q 005140 571 ATAVTSVHEMENGFNIWSFN-GKLLYRT 597 (712)
Q Consensus 571 ~t~s~~~~~~d~~v~iw~~~-g~~~~~~ 597 (712)
++++. |+++++|++. |+++...
T Consensus 209 lS~sG-----D~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 209 LSGSG-----DKTLRLWDITSGKLLDTC 231 (390)
T ss_pred eecCC-----CCcEEEEecccCCccccc
Confidence 99999 9999999986 7666543
No 368
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.32 E-value=6.3e-05 Score=70.65 Aligned_cols=132 Identities=15% Similarity=0.202 Sum_probs=94.5
Q ss_pred eEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCC-CeEEEEeccCCCceEEEE
Q 005140 466 IIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSG-RFIVLAGLKGFNGQLEFY 542 (712)
Q Consensus 466 v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg-~~l~~~~~~~~dg~v~iw 542 (712)
..++.|++.|..++++..+| .+.+-+.... .++.+...+.| .+....|+-.. +.+.+|+. |+.+..|
T Consensus 124 ~lslD~~~~~~~i~vs~s~G---~~~~v~~t~~----~le~vq~wk~He~E~Wta~f~~~~pnlvytGgD---D~~l~~~ 193 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRG---SISGVYETEM----VLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGD---DGSLSCW 193 (339)
T ss_pred eeEEEeeccCceEEEEcCCC---cEEEEeccee----eeeecccccccceeeeeeecccCCCceEEecCC---CceEEEE
Confidence 44788999999988888877 6664443221 12233345555 45667776544 46677776 9999999
Q ss_pred ECC-cceeee---eccccceeeEEECC-CCCEEEEEEccceeccccEEEEEec--Cceeeee-cccceeeeEEecCCC
Q 005140 543 NVD-ELETMA---TAEHFMATDVEWDP-TGRYVATAVTSVHEMENGFNIWSFN--GKLLYRT-LKDHFFQFLWRPRPP 612 (712)
Q Consensus 543 d~~-~~~~~~---~~~~~~v~~~~~sp-dg~~l~t~s~~~~~~d~~v~iw~~~--g~~~~~~-~~~~i~~~~w~p~~~ 612 (712)
|++ ..+.+. ..|+..|.++.-|| .+.+|+||+. |..+++||.. |+.+... ..+.||.+.|+|.-.
T Consensus 194 D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsY-----De~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 194 DIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSY-----DECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIF 266 (339)
T ss_pred EecCCcceeeecceeeecceEEEecCCCCCceEEEecc-----ccceeeeehhcccCccccCccccceEEEEecchhh
Confidence 998 333333 36778888888886 5789999999 9999999976 6666655 348999999999643
No 369
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.32 E-value=2.5e-06 Score=77.05 Aligned_cols=70 Identities=23% Similarity=0.328 Sum_probs=59.8
Q ss_pred EEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 61 IIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 61 ~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
+|||.||+. ..|.+.|...|..+|++||+|.+ |..- + |.+.||-|||.|.+.+.|..|++.|+|+.+-++
T Consensus 11 TlYInnLne--kI~~~elkrsL~~LFsqfG~ild--I~a~--k-t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK 80 (221)
T KOG4206|consen 11 TLYINNLNE--KIKKDELKRSLYLLFSQFGKILD--ISAF--K-TPKMRGQAFVVFKETEAASAALRALQGFPFYGK 80 (221)
T ss_pred eEeehhccc--cccHHHHHHHHHHHHHhhCCeEE--EEec--C-CCCccCceEEEecChhHHHHHHHHhcCCcccCc
Confidence 999999994 23447788888889999999977 5433 3 789999999999999999999999999998776
No 370
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.31 E-value=2.4e-06 Score=80.13 Aligned_cols=84 Identities=23% Similarity=0.381 Sum_probs=72.9
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-...|+|.|||. .+...+|+++|..||.++. +.|-+|+ .|++.|-|=|.|...++|..|++.+||..++++
T Consensus 82 ~~~~v~v~NL~~------~V~~~Dl~eLF~~~~~~~r--~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~ 152 (243)
T KOG0533|consen 82 RSTKVNVSNLPY------GVIDADLKELFAEFGELKR--VAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGR 152 (243)
T ss_pred CcceeeeecCCc------CcchHHHHHHHHHhccceE--EeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCc
Confidence 346899999998 5669999999999999999 9999998 999999999999999999999999999999997
Q ss_pred eEEEEEeecccccc
Q 005140 138 HIFAVNMFDDFDKF 151 (712)
Q Consensus 138 ~~l~v~~~~~~~~~ 151 (712)
.+++.....-...
T Consensus 153 -~mk~~~i~~~~~~ 165 (243)
T KOG0533|consen 153 -PMKIEIISSPSQS 165 (243)
T ss_pred -eeeeEEecCcccc
Confidence 5666665543333
No 371
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.31 E-value=1.1e-06 Score=83.69 Aligned_cols=76 Identities=26% Similarity=0.345 Sum_probs=67.4
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceE
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~ 139 (712)
+.|||..+-. +..+.+|+.+|+-||+|.. |.+..++.++.+|||+||+|.+...-..|+..||-+.|+|. -
T Consensus 211 nRiYVaSvHp------DLSe~DiKSVFEAFG~I~~--C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQ-y 281 (544)
T KOG0124|consen 211 NRIYVASVHP------DLSETDIKSVFEAFGEIVK--CQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQ-Y 281 (544)
T ss_pred heEEeeecCC------CccHHHHHHHHHhhcceee--EEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccc-e
Confidence 5788887765 6779999999999999999 99999998889999999999999999999999999999885 5
Q ss_pred EEEEe
Q 005140 140 FAVNM 144 (712)
Q Consensus 140 l~v~~ 144 (712)
|+|-+
T Consensus 282 LRVGk 286 (544)
T KOG0124|consen 282 LRVGK 286 (544)
T ss_pred Eeccc
Confidence 55443
No 372
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.29 E-value=2.1e-06 Score=84.06 Aligned_cols=78 Identities=19% Similarity=0.356 Sum_probs=69.8
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhc-cCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQ-IGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~-~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
+-+||.|||. +.-..+|+.+|.. .|+|+. |.+-.|+ +|++||.|.|||+++|.+++|++.||.+.+.++
T Consensus 45 R~vfItNIpy------d~rWqdLKdLvrekvGev~y--veLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR- 114 (608)
T KOG4212|consen 45 RSVFITNIPY------DYRWQDLKDLVREKVGEVEY--VELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGR- 114 (608)
T ss_pred ceEEEecCcc------hhhhHhHHHHHHHhcCceEe--eeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCc-
Confidence 4599999998 6668889988865 689999 9999998 999999999999999999999999999999996
Q ss_pred EEEEEeecc
Q 005140 139 IFAVNMFDD 147 (712)
Q Consensus 139 ~l~v~~~~~ 147 (712)
.|+|.--.+
T Consensus 115 ~l~vKEd~d 123 (608)
T KOG4212|consen 115 ELVVKEDHD 123 (608)
T ss_pred eEEEeccCc
Confidence 888876555
No 373
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.28 E-value=1.8e-06 Score=87.08 Aligned_cols=83 Identities=17% Similarity=0.268 Sum_probs=73.5
Q ss_pred cCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 005140 56 SGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135 (712)
Q Consensus 56 ~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 135 (712)
...+..++|.||..++- -.+|+.||++||.|+- ..++.+..+--.+.|+||++.+.++|.++|+.|+.+.|.
T Consensus 402 s~~gRNlWVSGLSstTR------AtDLKnlFSKyGKVvG--AKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELH 473 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTR------ATDLKNLFSKYGKVVG--AKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELH 473 (940)
T ss_pred cccccceeeeccccchh------hhHHHHHHHHhcceec--eeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhc
Confidence 55889999999998665 6789999999999998 899998777778999999999999999999999999999
Q ss_pred CceEEEEEeecc
Q 005140 136 RAHIFAVNMFDD 147 (712)
Q Consensus 136 ~~~~l~v~~~~~ 147 (712)
++ ++.|-..++
T Consensus 474 Gr-mISVEkaKN 484 (940)
T KOG4661|consen 474 GR-MISVEKAKN 484 (940)
T ss_pred ce-eeeeeeccc
Confidence 86 888776543
No 374
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.27 E-value=0.00024 Score=65.90 Aligned_cols=192 Identities=12% Similarity=0.026 Sum_probs=120.5
Q ss_pred CCEEEEEcCCCCCCCcCCCccEEEEEEccCCce-eeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEE
Q 005140 265 EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKV-MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMIS 343 (712)
Q Consensus 265 g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~ 343 (712)
.-+||.|+.. |...+|...+.+. +.....+...+.+ ++ ..+-+ .-..+++..|.+++
T Consensus 84 c~~la~gG~~----------g~fd~~~~~tn~~h~~~cd~snn~v~~-----~~-----r~cd~--~~~~~i~sndht~k 141 (344)
T KOG4532|consen 84 CVTLADGGAS----------GQFDLFACNTNDGHLYQCDVSNNDVTL-----VK-----RYCDL--KFPLNIASNDHTGK 141 (344)
T ss_pred ccEEEecccc----------ceeeeecccCcccceeeecccccchhh-----hh-----hhccc--ccceeeccCCccee
Confidence 3578888888 8999999876543 2222222222110 00 01111 11234444488888
Q ss_pred EEEcCCceecccccccccC--eeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeee-eee--eecceeEEEC
Q 005140 344 VYETESFTLIDKKSLKVEN--VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK-NLF--SVSDCKMYWQ 418 (712)
Q Consensus 344 iwd~~~~~~~~~~~~~~~~--v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~--~~~~~~~~~s 418 (712)
+.++..+.. +...|.+. +.+++++|+++++++ -+...+|..|.++........ ... ........|+
T Consensus 142 ~~~~~~~s~--~~~~h~~~~~~ns~~~snd~~~~~~-------Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s 212 (344)
T KOG4532|consen 142 TMVVSGDSN--KFAVHNQNLTQNSLHYSNDPSWGSS-------VGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFS 212 (344)
T ss_pred EEEEecCcc--cceeeccccceeeeEEcCCCceEEE-------ecCCCcceEEEeCCccceeeeeEecccCCCceeeeec
Confidence 887764322 22245544 788999999999998 344456777777654322222 111 2223445799
Q ss_pred cCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEE--ecCCCCceEEEEEeeCCC--EEEEEEcCCCCCeEEEEE
Q 005140 419 SSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLE--LDNKNDKIIAFAWEPKGH--RFAVIHGDSPRPDISFYS 494 (712)
Q Consensus 419 ~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--l~~h~~~v~~~~~sp~g~--~l~~~~~d~~~~~v~i~d 494 (712)
.....+|++..+++ +.+|+++....|..... -+.|++.+..+.|+|-|. .|...-.-+ .+.+.|
T Consensus 213 ~~~~~FAv~~Qdg~---------~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs---~~hv~D 280 (344)
T KOG4532|consen 213 ENDLQFAVVFQDGT---------CAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFS---RVHVVD 280 (344)
T ss_pred cCcceEEEEecCCc---------EEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcc---eEEEEE
Confidence 99999999999988 89999998777654433 456899999999998663 344443344 789999
Q ss_pred eeccc
Q 005140 495 MRTAQ 499 (712)
Q Consensus 495 ~~~~~ 499 (712)
+++..
T Consensus 281 ~R~~~ 285 (344)
T KOG4532|consen 281 TRNYV 285 (344)
T ss_pred cccCc
Confidence 97754
No 375
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.26 E-value=0.002 Score=63.73 Aligned_cols=268 Identities=9% Similarity=0.125 Sum_probs=152.7
Q ss_pred cEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-----------CCeEEEEEcCCceec
Q 005140 285 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-----------KNMISVYETESFTLI 353 (712)
Q Consensus 285 ~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-----------d~~i~iwd~~~~~~~ 353 (712)
+.+.|+|..+++.+-.+...... .+..|| |++.+++.. ...|.+||..+....
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~~---------------~~~~sp-dgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~ 80 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFLG---------------NVALSP-DGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPT 80 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESSE---------------EEEE-T-TSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEE
T ss_pred ceEEEEECCCCcEEEEeecccCC---------------ceeECC-CCCEEEEEEEEEeccccccceeEEEEEecCcCccc
Confidence 57889998888887776654433 467899 999887643 245899999987654
Q ss_pred cccccc-------ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEE-CcCCCEEE
Q 005140 354 DKKSLK-------VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYW-QSSGDYLA 425 (712)
Q Consensus 354 ~~~~~~-------~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~g~~l~ 425 (712)
....+. ......+++|++|+++.++. -.-...|.+.|+..++.+..... ..|.+.+ +.+ +.+.
T Consensus 81 ~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N-----~TPa~SVtVVDl~~~kvv~ei~~---PGC~~iyP~~~-~~F~ 151 (342)
T PF06433_consen 81 GEIEIPPKPRAQVVPYKNMFALSADGKFLYVQN-----FTPATSVTVVDLAAKKVVGEIDT---PGCWLIYPSGN-RGFS 151 (342)
T ss_dssp EEEEETTS-B--BS--GGGEEE-TTSSEEEEEE-----ESSSEEEEEEETTTTEEEEEEEG---TSEEEEEEEET-TEEE
T ss_pred ceEecCCcchheecccccceEEccCCcEEEEEc-----cCCCCeEEEEECCCCceeeeecC---CCEEEEEecCC-CceE
Confidence 322222 12345679999999998842 23344688888888776654332 2222222 122 2344
Q ss_pred EEEcccccccccccccEEEEEEecCCcceeEEE--ecCCCCc-eEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccC
Q 005140 426 VKVDRYTKTKKSTYTGFELFRIKERDIPIEVLE--LDNKNDK-IIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAG 502 (712)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--l~~h~~~-v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~ 502 (712)
+...|+. +..+.+...+......+ +..-..+ +..-+++..+..++..+-.| .|+-.++.....
T Consensus 152 ~lC~DGs---------l~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G---~v~~~dlsg~~~-- 217 (342)
T PF06433_consen 152 MLCGDGS---------LLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEG---NVYSADLSGDSA-- 217 (342)
T ss_dssp EEETTSC---------EEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTS---EEEEEEETTSSE--
T ss_pred EEecCCc---------eEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCC---EEEEEeccCCcc--
Confidence 5555544 45555554444432111 1111222 23445666667777778888 777777754321
Q ss_pred ceeEEEEeC--------CC----ceeEEEEccCCCeEEEEec-cC------CCceEEEEECCcceeeeeccc-cceeeEE
Q 005140 503 RVSKLTTLK--------GK----QANALFWSPSGRFIVLAGL-KG------FNGQLEFYNVDELETMATAEH-FMATDVE 562 (712)
Q Consensus 503 ~~~~~~~~~--------~~----~v~~l~~spdg~~l~~~~~-~~------~dg~v~iwd~~~~~~~~~~~~-~~v~~~~ 562 (712)
....... .+ .-..+++++....|++... +. ....|.+||+.+++.+...+- ..+.+++
T Consensus 218 --~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~ 295 (342)
T PF06433_consen 218 --KFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIA 295 (342)
T ss_dssp --EEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEE
T ss_pred --cccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEE
Confidence 1222221 11 1234788876655555332 11 223588889999999988663 5677999
Q ss_pred ECCCCCEEEEE-EccceeccccEEEEEec-Cceeeee
Q 005140 563 WDPTGRYVATA-VTSVHEMENGFNIWSFN-GKLLYRT 597 (712)
Q Consensus 563 ~spdg~~l~t~-s~~~~~~d~~v~iw~~~-g~~~~~~ 597 (712)
.|.+.+-++.+ +.. ++.+.+||.. |+++...
T Consensus 296 Vsqd~~P~L~~~~~~----~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 296 VSQDDKPLLYALSAG----DGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp EESSSS-EEEEEETT----TTEEEEEETTT--EEEEE
T ss_pred EccCCCcEEEEEcCC----CCeEEEEeCcCCcEEeeh
Confidence 99998844443 331 6889999965 6666654
No 376
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.26 E-value=2e-06 Score=78.39 Aligned_cols=77 Identities=19% Similarity=0.251 Sum_probs=66.3
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
.+..||.+-|-. ++..+.|-+.|.+|-.-.. ..+.+|+.||++|||+||.|.++.++..|++.|||..++.+
T Consensus 189 ~DfRIfcgdlgN------evnd~vl~raf~Kfpsf~~--akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsr 260 (290)
T KOG0226|consen 189 DDFRIFCGDLGN------EVNDDVLARAFKKFPSFQK--AKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSR 260 (290)
T ss_pred ccceeecccccc------cccHHHHHHHHHhccchhh--ccccccccccccccceeeeecCHHHHHHHHHhhcccccccc
Confidence 567999999997 6668889999999976555 78999999999999999999999999999999999888764
Q ss_pred eEEEEE
Q 005140 138 HIFAVN 143 (712)
Q Consensus 138 ~~l~v~ 143 (712)
.++..
T Consensus 261 -piklR 265 (290)
T KOG0226|consen 261 -PIKLR 265 (290)
T ss_pred -hhHhh
Confidence 54443
No 377
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.25 E-value=3.1e-05 Score=82.42 Aligned_cols=112 Identities=13% Similarity=0.153 Sum_probs=79.5
Q ss_pred eEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEE
Q 005140 257 KLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAK 336 (712)
Q Consensus 257 ~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~ 336 (712)
+-.+|+|...++++++-.+-. .|.|.||- .+|++-+....+-... +++|.| ..-.|+.
T Consensus 19 ti~SWHPsePlfAVA~fS~er------~GSVtIfa-dtGEPqr~Vt~P~hat--------------SLCWHp-e~~vLa~ 76 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPER------GGSVTIFA-DTGEPQRDVTYPVHAT--------------SLCWHP-EEFVLAQ 76 (1416)
T ss_pred cccccCCCCceeEEEEecCCC------CceEEEEe-cCCCCCcccccceehh--------------hhccCh-HHHHHhh
Confidence 456899999999888765322 27888886 6888766555443332 689999 7767777
Q ss_pred ec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEe
Q 005140 337 LG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQ 395 (712)
Q Consensus 337 ~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~ 395 (712)
+- -|.+.+|...+.+.......|...+..+.|||+|..+++ +..-+.+.+|.++
T Consensus 77 gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t-----~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 77 GWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMT-----LDNPGSVHLWRYD 131 (1416)
T ss_pred ccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEE-----cCCCceeEEEEee
Confidence 66 899999998766544334456677999999999999998 3334444555555
No 378
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.24 E-value=0.0028 Score=67.76 Aligned_cols=257 Identities=12% Similarity=0.081 Sum_probs=136.9
Q ss_pred eEEecCCCCCEEEEec--C----CeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCC------CeE
Q 005140 323 VFRWGGGKDKYFAKLG--K----NMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQ------PAR 390 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~--d----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~------~~~ 390 (712)
.+++|| ||+++|.+- . ..|+++|+.+++.+... +.......+.|+++++.+.+..... ... +..
T Consensus 128 ~~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-i~~~~~~~~~W~~d~~~~~y~~~~~--~~~~~~~~~~~~ 203 (414)
T PF02897_consen 128 GFSVSP-DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-IENPKFSSVSWSDDGKGFFYTRFDE--DQRTSDSGYPRQ 203 (414)
T ss_dssp EEEETT-TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-EEEEESEEEEECTTSSEEEEEECST--TTSS-CCGCCEE
T ss_pred eeeECC-CCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-ccccccceEEEeCCCCEEEEEEeCc--ccccccCCCCcE
Confidence 468899 999998764 3 35999999999776432 2222223499999999888754333 223 778
Q ss_pred EEEEecCCccc----eeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCc---ceeEEEecCCC
Q 005140 391 VSLVQIPSKEE----LRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDI---PIEVLELDNKN 463 (712)
Q Consensus 391 i~~~~~~~~~~----~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~---~~~~~~l~~h~ 463 (712)
|+.+.+.+... +....-.....+.+..+++|++|++.+..+. . ...+|.+..... ......+..+.
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~------~-~s~v~~~d~~~~~~~~~~~~~l~~~~ 276 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGT------S-ESEVYLLDLDDGGSPDAKPKLLSPRE 276 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSS------S-EEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccc------c-CCeEEEEeccccCCCcCCcEEEeCCC
Confidence 99998876532 2111111111345678999999998777654 1 135555554432 11112222223
Q ss_pred CceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEE
Q 005140 464 DKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYN 543 (712)
Q Consensus 464 ~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd 543 (712)
..+....-+..+.+++....+.+...|.-.++...... ....+..-+...+.--.++..+.+|++....+....|.+++
T Consensus 277 ~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~-~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~ 355 (414)
T PF02897_consen 277 DGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPA-EWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYD 355 (414)
T ss_dssp SS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGG-GEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred CceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccc-cceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEE
Confidence 34433333334444444444444445655666543321 11111111122233344555677777766544466899999
Q ss_pred CC-cceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCc
Q 005140 544 VD-ELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK 592 (712)
Q Consensus 544 ~~-~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~ 592 (712)
+. +...... ...+.+..+...+++..+.....+ ......++-||+...
T Consensus 356 ~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss-~~~P~~~y~~d~~t~ 406 (414)
T PF02897_consen 356 LDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSS-FTTPPTVYRYDLATG 406 (414)
T ss_dssp TT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEE-TTEEEEEEEEETTTT
T ss_pred CCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeC-CCCCCEEEEEECCCC
Confidence 99 5444332 334556677777777755544432 011567777777644
No 379
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.23 E-value=5.8e-05 Score=80.44 Aligned_cols=110 Identities=11% Similarity=0.169 Sum_probs=77.9
Q ss_pred CcccceEEEcCCCcEEEEEec----Cc-eEEeecccCcceeeeecCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccE
Q 005140 213 YWTESFVQWSPLGTYLATVHR----QG-AAVWGGANTFNRLMRYAHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVV 286 (712)
Q Consensus 213 ~~~v~~v~~Spdg~~lat~~~----~~-i~iw~~~~~~~~~~~~~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~ 286 (712)
....+..+|+|...++|.++- .| |-|+--. +.+.....-+ .+.+++|+|..-.|+.|-.. |.
T Consensus 15 davsti~SWHPsePlfAVA~fS~er~GSVtIfadt--GEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~----------g~ 82 (1416)
T KOG3617|consen 15 DAVSTISSWHPSEPLFAVASFSPERGGSVTIFADT--GEPQRDVTYPVHATSLCWHPEEFVLAQGWEM----------GV 82 (1416)
T ss_pred cccccccccCCCCceeEEEEecCCCCceEEEEecC--CCCCcccccceehhhhccChHHHHHhhcccc----------ce
Confidence 344456789999999988763 23 6666433 3332222222 26789999998888888887 89
Q ss_pred EEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcC
Q 005140 287 INIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETE 348 (712)
Q Consensus 287 I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~ 348 (712)
+.+|...+.+.-.....|...+. .+.||+ +|..+.++. -|.+.+|...
T Consensus 83 ~~v~~~~~~e~htv~~th~a~i~-------------~l~wS~-~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 83 SDVQKTNTTETHTVVETHPAPIQ-------------GLDWSH-DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eEEEecCCceeeeeccCCCCCce-------------eEEecC-CCCeEEEcCCCceeEEEEee
Confidence 99999755554443444544432 689999 999999999 8999999876
No 380
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.23 E-value=2.5e-06 Score=83.52 Aligned_cols=74 Identities=27% Similarity=0.377 Sum_probs=64.8
Q ss_pred cCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 005140 56 SGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135 (712)
Q Consensus 56 ~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 135 (712)
.+.+|.|||.|||. +.+.+.|++.|..||.|.. ..| + +.|++|| .|.|.++++|++|+..|||..++
T Consensus 533 arKa~qIiirNlP~------dfTWqmlrDKfre~G~v~y--adi-m--e~GkskG--VVrF~s~edAEra~a~Mngs~l~ 599 (608)
T KOG4212|consen 533 ARKACQIIIRNLPF------DFTWQMLRDKFREIGHVLY--ADI-M--ENGKSKG--VVRFFSPEDAERACALMNGSRLD 599 (608)
T ss_pred cccccEEEEecCCc------cccHHHHHHHHHhccceeh--hhh-h--ccCCccc--eEEecCHHHHHHHHHHhccCccc
Confidence 44679999999998 7789999999999999988 666 3 3699999 89999999999999999999999
Q ss_pred CceEEEEE
Q 005140 136 RAHIFAVN 143 (712)
Q Consensus 136 ~~~~l~v~ 143 (712)
++ .++|.
T Consensus 600 Gr-~I~V~ 606 (608)
T KOG4212|consen 600 GR-NIKVT 606 (608)
T ss_pred Cc-eeeee
Confidence 97 55553
No 381
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.22 E-value=1.7e-06 Score=92.10 Aligned_cols=148 Identities=14% Similarity=0.126 Sum_probs=102.5
Q ss_pred CCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee--cCCCeeEEEecCCCCEEEEEcCCCCCC
Q 005140 202 HLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY--AHPQVKLIDFSPGEKYLVTYSSHEPSN 278 (712)
Q Consensus 202 ~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~--~~~~v~~i~~Spdg~~l~t~s~d~~~~ 278 (712)
.+.....|..|...-+|++||-+.+.|+.|+..| |+++++. ++...... |...|+.+.=|-||..+++.+.-..
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~-sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~-- 1166 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVS-SGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSS-- 1166 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEcc-CccccccccccccccccccccCCcceeeeeccccC--
Confidence 3556667788888899999999999999999999 9999998 66655444 3345999999999998887665410
Q ss_pred CcCCCccEEEEEEcc-CCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccc
Q 005140 279 PRDANRVVINIFDVR-TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKK 356 (712)
Q Consensus 279 ~~~~~~~~I~iwd~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~ 356 (712)
--..+|++. ++...++|...+ ++.||. .-++-+.+. .....+||+.++..+.+.
T Consensus 1167 ------PlsaLW~~~s~~~~~Hsf~ed~-----------------~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l~ty 1222 (1516)
T KOG1832|consen 1167 ------PLSALWDASSTGGPRHSFDEDK-----------------AVKFSN-SLQFRALGTEADDALLYDVQTCSPLQTY 1222 (1516)
T ss_pred ------chHHHhccccccCccccccccc-----------------eeehhh-hHHHHHhcccccceEEEecccCcHHHHh
Confidence 134589974 345556665432 578887 544434444 567889999998876553
Q ss_pred cccc----cCeeeEEECCCCCeEE
Q 005140 357 SLKV----ENVMDFSWSPTDPIIS 376 (712)
Q Consensus 357 ~~~~----~~v~~~~~sp~~~~la 376 (712)
.... -.-++..|||++..|.
T Consensus 1223 lt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1223 LTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred cCcchhhhhhccccccCCCcceEe
Confidence 1111 1135677888877665
No 382
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.16 E-value=0.0049 Score=64.45 Aligned_cols=138 Identities=15% Similarity=0.269 Sum_probs=90.5
Q ss_pred cEEEEEEecCCcceeEEEecCCCCceEEEEEeeC-CCEEEEEEc----CCC-CCeEEEEEeecccccCceeEEEEeC-CC
Q 005140 441 GFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK-GHRFAVIHG----DSP-RPDISFYSMRTAQHAGRVSKLTTLK-GK 513 (712)
Q Consensus 441 ~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~-g~~l~~~~~----d~~-~~~v~i~d~~~~~~~~~~~~~~~~~-~~ 513 (712)
++.++.+... ..+.+....-.....++.||-. ...+.+... ++. .-.-.+|++...+ .+...+.+++ ..
T Consensus 185 Nl~L~~~~~~--klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~k--lqrvsvtsipL~s 260 (545)
T PF11768_consen 185 NLHLLSCSGG--KLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNK--LQRVSVTSIPLPS 260 (545)
T ss_pred cEEEEEecCC--cEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCc--eeEEEEEEEecCC
Confidence 4555555543 2222221111444566777763 333433322 221 1133567764322 1233444555 44
Q ss_pred ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 514 QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 514 ~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
.+.+.+++|+...++.|+. ||.|.+||...+..........++.++|+|+|..|++|+. .|.+.+||..
T Consensus 261 ~v~~ca~sp~E~kLvlGC~---DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~-----qGelQ~FD~A 329 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCE---DGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSE-----QGELQCFDMA 329 (545)
T ss_pred cceEEecCcccceEEEEec---CCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEcC-----CceEEEEEee
Confidence 7899999999999999999 9999999998665555555567889999999999999999 8999999975
No 383
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.14 E-value=1.8e-06 Score=84.51 Aligned_cols=62 Identities=24% Similarity=0.446 Sum_probs=55.7
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHH
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKE 127 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~ 127 (712)
.++++||++|++ +..++.|+..|++||+|.+ +.++.|+.+++++||+||+|++++.-..++.
T Consensus 5 ~~~KlfiGgisw------~ttee~Lr~yf~~~Gev~d--~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~ 66 (311)
T KOG4205|consen 5 ESGKLFIGGLSW------ETTEESLREYFSQFGEVTD--CVVMRDPSTGRSRGFGFVTFATPEGVDAVLN 66 (311)
T ss_pred CCcceeecCcCc------cccHHHHHHHhcccCceee--EEEeccCCCCCcccccceecCCCcchheeec
Confidence 567999999998 6668999999999999999 9999999999999999999998876666544
No 384
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.13 E-value=0.0025 Score=67.10 Aligned_cols=256 Identities=12% Similarity=0.055 Sum_probs=126.0
Q ss_pred CCcEEEEEecCc-eEEeecccCcceeeeecCCC-eeE-EEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeee
Q 005140 224 LGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQ-VKL-IDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRD 300 (712)
Q Consensus 224 dg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~-v~~-i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~ 300 (712)
++..++.++.++ +..+|.. +++.+-+....+ +.+ ... .+..++.+..+ +.|..||..+|+.+..
T Consensus 104 ~~~~v~v~~~~g~l~ald~~-tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~----------g~l~a~d~~tG~~~W~ 170 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAE-DGKELWRAKLSSEVLSPPLV--ANGLVVVRTND----------GRLTALDAATGERLWT 170 (377)
T ss_pred cCCEEEEEcCCCEEEEEECC-CCcEeeeeccCceeecCCEE--ECCEEEEECCC----------CeEEEEEcCCCceeeE
Confidence 456666777676 7788987 666665544332 221 111 34566677777 8899999999998777
Q ss_pred ccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccccccccc-C------eeeEEECC--
Q 005140 301 FKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVE-N------VMDFSWSP-- 370 (712)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~-~------v~~~~~sp-- 370 (712)
+........ ..+.. .... . ++ .++.+. ++.+..+|..+|+.+........ + +..+.-+|
T Consensus 171 ~~~~~~~~~------~~~~~--sp~~-~-~~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~ 239 (377)
T TIGR03300 171 YSRVTPALT------LRGSA--SPVI-A-DG-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV 239 (377)
T ss_pred EccCCCcee------ecCCC--CCEE-E-CC-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE
Confidence 654432210 00000 1122 2 33 444444 78999999988876654322111 0 00111111
Q ss_pred CCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecC
Q 005140 371 TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKER 450 (712)
Q Consensus 371 ~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 450 (712)
.+..+.+ ++. ...++.++..+.+.+-...... ... ....+..++++..++. +..++....
T Consensus 240 ~~~~vy~-----~~~--~g~l~a~d~~tG~~~W~~~~~~--~~~--p~~~~~~vyv~~~~G~---------l~~~d~~tG 299 (377)
T TIGR03300 240 DGGQVYA-----VSY--QGRVAALDLRSGRVLWKRDASS--YQG--PAVDDNRLYVTDADGV---------VVALDRRSG 299 (377)
T ss_pred ECCEEEE-----EEc--CCEEEEEECCCCcEEEeeccCC--ccC--ceEeCCEEEEECCCCe---------EEEEECCCC
Confidence 1334443 112 2346666665554332222111 011 1224556666554443 233332211
Q ss_pred CcceeEE-EecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCce-eEEEEccCCCe
Q 005140 451 DIPIEVL-ELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQA-NALFWSPSGRF 526 (712)
Q Consensus 451 ~~~~~~~-~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v-~~l~~spdg~~ 526 (712)
. ..-.. .+. .....+... .+.++++++.++ .|.+++..+++ .+..+. ...+ .+..+. ++ .
T Consensus 300 ~-~~W~~~~~~--~~~~ssp~i--~g~~l~~~~~~G---~l~~~d~~tG~------~~~~~~~~~~~~~~sp~~~-~~-~ 363 (377)
T TIGR03300 300 S-ELWKNDELK--YRQLTAPAV--VGGYLVVGDFEG---YLHWLSREDGS------FVARLKTDGSGIASPPVVV-GD-G 363 (377)
T ss_pred c-EEEcccccc--CCccccCEE--ECCEEEEEeCCC---EEEEEECCCCC------EEEEEEcCCCccccCCEEE-CC-E
Confidence 1 10000 110 111112222 467888888888 89999987665 333333 2222 223332 33 4
Q ss_pred EEEEeccCCCceEEEE
Q 005140 527 IVLAGLKGFNGQLEFY 542 (712)
Q Consensus 527 l~~~~~~~~dg~v~iw 542 (712)
|++++. ||.|+.|
T Consensus 364 l~v~~~---dG~l~~~ 376 (377)
T TIGR03300 364 LLVQTR---DGDLYAF 376 (377)
T ss_pred EEEEeC---CceEEEe
Confidence 667776 8888765
No 385
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.13 E-value=0.00029 Score=73.26 Aligned_cols=92 Identities=14% Similarity=0.278 Sum_probs=66.6
Q ss_pred EEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEc
Q 005140 442 FELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWS 521 (712)
Q Consensus 442 ~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~s 521 (712)
..+|.+..+......++--.....|.+.+++|+.+.|+.|..|| +|.+||...+.. ..... .-..+.++|+
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~Dg---SiiLyD~~~~~t-----~~~ka-~~~P~~iaWH 308 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDG---SIILYDTTRGVT-----LLAKA-EFIPTLIAWH 308 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCC---eEEEEEcCCCee-----eeeee-cccceEEEEc
Confidence 45565554322211121114488999999999999999999999 999999865432 11111 2246889999
Q ss_pred cCCCeEEEEeccCCCceEEEEECC
Q 005140 522 PSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 522 pdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
|+|..+++|+. .|.+.+||+.
T Consensus 309 p~gai~~V~s~---qGelQ~FD~A 329 (545)
T PF11768_consen 309 PDGAIFVVGSE---QGELQCFDMA 329 (545)
T ss_pred CCCcEEEEEcC---CceEEEEEee
Confidence 99999999998 8999999986
No 386
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.05 E-value=1.2e-05 Score=82.16 Aligned_cols=63 Identities=29% Similarity=0.437 Sum_probs=58.2
Q ss_pred EEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 61 IIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 61 ~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
.+||+ |.|+ +..|.++|+++|.|.. +.+-+|- | +.|||||.|.++++|++|++.+|...+.++
T Consensus 3 sl~vg--~~v~-------e~~l~~~f~~~~~v~s--~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~ 65 (369)
T KOG0123|consen 3 SLYVG--PDVT-------EAMLFDKFSPAGPVLS--IRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGK 65 (369)
T ss_pred ceecC--CcCC-------hHHHHHHhcccCCcee--EEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCc
Confidence 57888 6655 8889999999999999 9999998 6 999999999999999999999999999886
No 387
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=0.00095 Score=65.73 Aligned_cols=88 Identities=19% Similarity=0.279 Sum_probs=65.6
Q ss_pred eEEeecccCcceeeeecCC--CeeEEEecCCCC-EEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCC
Q 005140 236 AAVWGGANTFNRLMRYAHP--QVKLIDFSPGEK-YLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGG 312 (712)
Q Consensus 236 i~iw~~~~~~~~~~~~~~~--~v~~i~~Spdg~-~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~ 312 (712)
+++.+.. +++...-++.. .|.+++|||... .|..++.+ ..|+|.|+.+...+..+..+...
T Consensus 175 v~~l~~~-~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~----------nkiki~dlet~~~vssy~a~~~~----- 238 (463)
T KOG1645|consen 175 VQKLESH-DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLG----------NKIKIMDLETSCVVSSYIAYNQI----- 238 (463)
T ss_pred eEEeccC-CcchhhcccccchhhhhhccCccccceeeeeccC----------ceEEEEecccceeeeheeccCCc-----
Confidence 5555555 55544433322 299999999887 67788888 89999999999988888887443
Q ss_pred CCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCC
Q 005140 313 TGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETES 349 (712)
Q Consensus 313 ~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~ 349 (712)
| +++|.- |+..++.++ +|.|.|||+..
T Consensus 239 --------w-SC~wDl-de~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 239 --------W-SCCWDL-DERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred --------e-eeeecc-CCcceeEEeccCceEEEEEccC
Confidence 6 589998 776555555 89999999874
No 388
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.04 E-value=4e-05 Score=75.15 Aligned_cols=94 Identities=11% Similarity=0.122 Sum_probs=69.5
Q ss_pred eEEeecccCcceeeeecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccC-CCcccccCCC
Q 005140 236 AAVWGGANTFNRLMRYAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKG-SADEFAVGGT 313 (712)
Q Consensus 236 i~iw~~~~~~~~~~~~~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~-~~~~~~~~~~ 313 (712)
+.+|... .+.....+.|-. +..++||||+++|+|+..| ..|+|-....--.+..|.. |..-+.
T Consensus 134 ~di~s~~-~~~~~~~lGhvSml~dVavS~D~~~IitaDRD----------EkIRvs~ypa~f~IesfclGH~eFVS---- 198 (390)
T KOG3914|consen 134 FDILSAD-SGRCEPILGHVSMLLDVAVSPDDQFIITADRD----------EKIRVSRYPATFVIESFCLGHKEFVS---- 198 (390)
T ss_pred eeeeccc-ccCcchhhhhhhhhheeeecCCCCEEEEecCC----------ceEEEEecCcccchhhhccccHhhee----
Confidence 5588877 566666666665 9999999999999999999 8899887765555666654 544432
Q ss_pred CCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccc
Q 005140 314 GGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDK 355 (712)
Q Consensus 314 ~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~ 355 (712)
.++..+ +..|++++ |++|++||+.+|+.++.
T Consensus 199 ---------~isl~~--~~~LlS~sGD~tlr~Wd~~sgk~L~t 230 (390)
T KOG3914|consen 199 ---------TISLTD--NYLLLSGSGDKTLRLWDITSGKLLDT 230 (390)
T ss_pred ---------eeeecc--CceeeecCCCCcEEEEecccCCcccc
Confidence 345444 45566666 99999999999988743
No 389
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.99 E-value=5.4e-06 Score=54.69 Aligned_cols=36 Identities=25% Similarity=0.515 Sum_probs=33.0
Q ss_pred CcccccCCCcccceEEEcCCCcEEEEEecCc-eEEee
Q 005140 205 PEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWG 240 (712)
Q Consensus 205 ~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~ 240 (712)
+...+.+|...|++++|+|++.+||+++.|+ |+|||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4567899999999999999999999999999 88997
No 390
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.96 E-value=0.00047 Score=66.39 Aligned_cols=226 Identities=10% Similarity=0.163 Sum_probs=126.8
Q ss_pred CCCEEEEec-CCeEEEEEcC-Cceecccccc-cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCC----ccce
Q 005140 330 KDKYFAKLG-KNMISVYETE-SFTLIDKKSL-KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS----KEEL 402 (712)
Q Consensus 330 dg~~la~~~-d~~i~iwd~~-~~~~~~~~~~-~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~----~~~~ 402 (712)
...-+.+.+ |.+++||--. .++.-..... ...+++.+++++....|.+ +-.++. +.-+.... ...+
T Consensus 35 ~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~v-----g~~ngt--vtefs~sedfnkm~~~ 107 (404)
T KOG1409|consen 35 KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYV-----GQDNGT--VTEFALSEDFNKMTFL 107 (404)
T ss_pred CCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEE-----EEecce--EEEEEhhhhhhhcchh
Confidence 344556666 9999999644 3333322212 2235888999999888887 323333 33333221 1122
Q ss_pred eeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEE
Q 005140 403 RQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIH 482 (712)
Q Consensus 403 ~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~ 482 (712)
+....+......+.|+..-..+++.+.+.. -.|.-.+.+.......+ ....+++.+.-. +-.++.
T Consensus 108 r~~~~h~~~v~~~if~~~~e~V~s~~~dk~----------~~~hc~e~~~~lg~Y~~---~~~~t~~~~d~~--~~fvGd 172 (404)
T KOG1409|consen 108 KDYLAHQARVSAIVFSLTHEWVLSTGKDKQ----------FAWHCTESGNRLGGYNF---ETPASALQFDAL--YAFVGD 172 (404)
T ss_pred hhhhhhhcceeeEEecCCceeEEEeccccc----------eEEEeeccCCcccceEe---eccCCCCceeeE--EEEecc
Confidence 222222222333345555555555544433 23333332222111111 001111111101 222222
Q ss_pred cCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceee---eeccccc
Q 005140 483 GDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETM---ATAEHFM 557 (712)
Q Consensus 483 ~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~---~~~~~~~ 557 (712)
..+ .|....+.... +.++.++.++ .+.+++|.|..+.|+++.. |..+.+||+...+-+ ..+|...
T Consensus 173 ~~g---qvt~lr~~~~~----~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~---d~~vi~wdigg~~g~~~el~gh~~k 242 (404)
T KOG1409|consen 173 HSG---QITMLKLEQNG----CQLITTFNGHTGEVTCLKWDPGQRLLFSGAS---DHSVIMWDIGGRKGTAYELQGHNDK 242 (404)
T ss_pred ccc---ceEEEEEeecC----CceEEEEcCcccceEEEEEcCCCcEEEeccc---cCceEEEeccCCcceeeeeccchhh
Confidence 233 45554443222 3477777766 6899999999999999998 999999999854333 2477788
Q ss_pred eeeEEECCCCCEEEEEEccceeccccEEEEEecCc
Q 005140 558 ATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK 592 (712)
Q Consensus 558 v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~ 592 (712)
|..+..-+--+.+.+++. |+.|.+|+.+-.
T Consensus 243 V~~l~~~~~t~~l~S~~e-----dg~i~~w~mn~~ 272 (404)
T KOG1409|consen 243 VQALSYAQHTRQLISCGE-----DGGIVVWNMNVK 272 (404)
T ss_pred hhhhhhhhhheeeeeccC-----CCeEEEEeccce
Confidence 888888888889999999 999999998743
No 391
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.95 E-value=4.6e-05 Score=73.11 Aligned_cols=160 Identities=14% Similarity=0.132 Sum_probs=108.4
Q ss_pred hhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecc----cCccee
Q 005140 174 KWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGA----NTFNRL 248 (712)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~----~~~~~~ 248 (712)
.|-.+..|.. |.++.. ..+.+-|.. ..-...|. ....|.+++|...+.++..|+.+| |...|+. +++.+.
T Consensus 218 awSlni~gyh-fs~G~s-qqv~L~nve--tg~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a 292 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLS-QQVLLTNVE--TGHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA 292 (425)
T ss_pred hhhhccceee-eccccc-ceeEEEEee--cccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce
Confidence 4555555554 444333 333344542 11222233 456788999999999999999999 8888876 224456
Q ss_pred eeecCCC-eeEEEecC-CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCce---eeeccCCCcccccCCCCCcCCCCcCe
Q 005140 249 MRYAHPQ-VKLIDFSP-GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKV---MRDFKGSADEFAVGGTGGVAGVSWPV 323 (712)
Q Consensus 249 ~~~~~~~-v~~i~~Sp-dg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (712)
.++.|+. |+++..-. ++++|++.+.+ |.|++||++--++ ++++.+|..... .--
T Consensus 293 ~rlyh~Ssvtslq~Lq~s~q~LmaS~M~----------gkikLyD~R~~K~~~~V~qYeGHvN~~a-----------~l~ 351 (425)
T KOG2695|consen 293 QRLYHDSSVTSLQILQFSQQKLMASDMT----------GKIKLYDLRATKCKKSVMQYEGHVNLSA-----------YLP 351 (425)
T ss_pred EEEEcCcchhhhhhhccccceEeeccCc----------CceeEeeehhhhcccceeeeeccccccc-----------ccc
Confidence 6666664 88887766 78999999999 9999999976555 888888865431 111
Q ss_pred EEecCCCCCEEEEec-CCeEEEEEcCCceecccccccc
Q 005140 324 FRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKV 360 (712)
Q Consensus 324 ~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~ 360 (712)
+-..+ ....+++++ |-..+||.+..+.++.......
T Consensus 352 ~~v~~-eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 352 AHVKE-EEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred ccccc-ccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence 33445 556666677 8899999999998886654443
No 392
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.94 E-value=5.3e-05 Score=56.82 Aligned_cols=70 Identities=19% Similarity=0.321 Sum_probs=49.1
Q ss_pred CEEEECCCCC-CCchhhhhhHHHHHHHhhccC-eeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 60 NIIVVDNLPV-VPKEKFEKLEGVIRKIYSQIG-VIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 60 ~~~~v~~lp~-~~~~~~~~~~~~l~~~f~~~g-~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
+.++|.|||. .+. .....-|++++..+| +|.. | +.|-|+|.|.+++.|.+|.+.|+|..+.|+
T Consensus 3 s~L~V~NLP~~~d~---~~I~~RL~qLsdNCGGkVl~--v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~ 67 (90)
T PF11608_consen 3 SLLYVSNLPTNKDP---SSIKNRLRQLSDNCGGKVLS--V----------SGGTAILRFPNQEFAERAQKRMEGEDVFGN 67 (90)
T ss_dssp EEEEEES--TTS-H---HHHHHHHHHHHHTTT--EEE--------------TT-EEEEESSHHHHHHHHHHHTT--SSSS
T ss_pred cEEEEecCCCCCCH---HHHHHHHHHHhhccCCEEEE--E----------eCCEEEEEeCCHHHHHHHHHhhcccccccc
Confidence 5799999995 443 567888999999997 7765 3 236899999999999999999999888876
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 68 -kI~v~~~ 74 (90)
T PF11608_consen 68 -KISVSFS 74 (90)
T ss_dssp ---EEESS
T ss_pred -eEEEEEc
Confidence 5666554
No 393
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.00019 Score=71.39 Aligned_cols=206 Identities=14% Similarity=0.233 Sum_probs=125.1
Q ss_pred ecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC----ceeeeccCCCcccccCCCCCcCCCCcCeEEe
Q 005140 251 YAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG----KVMRDFKGSADEFAVGGTGGVAGVSWPVFRW 326 (712)
Q Consensus 251 ~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (712)
+-|..+..=.+-.--+++.+++.| |.++.|.- ++ +.+..|..|...+. +++.
T Consensus 6 ymhrd~i~hv~~tka~fiiqASlD----------Gh~KFWkK-s~isGvEfVKhFraHL~~I~-------------sl~~ 61 (558)
T KOG0882|consen 6 YMHRDVITHVFPTKAKFIIQASLD----------GHKKFWKK-SRISGVEFVKHFRAHLGVIL-------------SLAV 61 (558)
T ss_pred hcccceeeeEeeehhheEEeeecc----------hhhhhcCC-CCccceeehhhhHHHHHHHH-------------hhhc
Confidence 345554444444556899999999 99999984 33 23455555655442 4667
Q ss_pred cCCCCCEEEEec--CCeEEEEEcCCceeccccc-ccccCeeeEEECCCCC--eEEEEeecCCCCCCCeEEEEEecCC--c
Q 005140 327 GGGKDKYFAKLG--KNMISVYETESFTLIDKKS-LKVENVMDFSWSPTDP--IISLFVPELGGGNQPARVSLVQIPS--K 399 (712)
Q Consensus 327 s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~~~--~la~~~~~~~~~~~~~~i~~~~~~~--~ 399 (712)
|. ++.++++.+ |..++++|+.+...+.-.. .-.++..+...+|... .|++ +.-..+.+.+++... .
T Consensus 62 S~-dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAV------s~~~sg~i~VvD~~~d~~ 134 (558)
T KOG0882|consen 62 SY-DGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAV------SLFKSGKIFVVDGFGDFC 134 (558)
T ss_pred cc-cceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEe------ecccCCCcEEECCcCCcC
Confidence 77 999998866 8999999998776653222 2334444444455432 2332 233344555555432 2
Q ss_pred cceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEec-CCcc-----------eeEEEecCCCCceE
Q 005140 400 EELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKE-RDIP-----------IEVLELDNKNDKII 467 (712)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~-----------~~~~~l~~h~~~v~ 467 (712)
+....+.++......+.+++.+..+.+....+. ++-|.... -..| .....++-......
T Consensus 135 q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gm---------VEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pt 205 (558)
T KOG0882|consen 135 QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGM---------VEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPT 205 (558)
T ss_pred ccceecccccCceEEEEeeccccceeeccccce---------eEeecCCCcccCccccccccccccchhhcccccccCcc
Confidence 344445555566666677777777666554444 33343331 0000 00111222356678
Q ss_pred EEEEeeCCCEEEEEEcCCCCCeEEEEEeeccc
Q 005140 468 AFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQ 499 (712)
Q Consensus 468 ~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~ 499 (712)
++.|+|+|..+.+.+.|. .|+++..+++.
T Consensus 206 s~Efsp~g~qistl~~Dr---kVR~F~~KtGk 234 (558)
T KOG0882|consen 206 SFEFSPDGAQISTLNPDR---KVRGFVFKTGK 234 (558)
T ss_pred ceEEccccCcccccCccc---EEEEEEeccch
Confidence 999999999999999888 99999998775
No 394
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.87 E-value=8.4e-06 Score=87.02 Aligned_cols=213 Identities=10% Similarity=0.108 Sum_probs=131.6
Q ss_pred cCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc
Q 005140 321 WPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 399 (712)
Q Consensus 321 ~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 399 (712)
+++++||. +.++|+.|. .|.|++|++.+|........|...|+.+.-|.+|..+++ .+.-...-.-+|+..+-
T Consensus 1104 fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Lt-----sss~S~PlsaLW~~~s~ 1177 (1516)
T KOG1832|consen 1104 FTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLT-----SSSSSSPLSALWDASST 1177 (1516)
T ss_pred eeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeee-----eccccCchHHHhccccc
Confidence 34899999 999999999 999999999999988888889999999999999988876 22222222233443321
Q ss_pred cceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEE-ecCCCCceEEEEEeeCCCEE
Q 005140 400 EELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLE-LDNKNDKIIAFAWEPKGHRF 478 (712)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-l~~h~~~v~~~~~sp~g~~l 478 (712)
.-..+++.... .+.|+.....-++++.... ..+|++.....-...+. ..+.+..-+...|||+.+.+
T Consensus 1178 -~~~~Hsf~ed~--~vkFsn~~q~r~~gt~~d~---------a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1178 -GGPRHSFDEDK--AVKFSNSLQFRALGTEADD---------ALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred -cCccccccccc--eeehhhhHHHHHhcccccc---------eEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 00111111111 2234444333333333322 46777765322110000 00112333667899988766
Q ss_pred EEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCce-eEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccccc
Q 005140 479 AVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQA-NALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFM 557 (712)
Q Consensus 479 ~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v-~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~ 557 (712)
. +|| .+||++... .++.+..-.+ -.=.|+|+|.-+++-+. |||+++.+++.+...-.
T Consensus 1246 l---ndG-----vLWDvR~~~------aIh~FD~ft~~~~G~FHP~g~eVIINSE--------IwD~RTF~lLh~VP~Ld 1303 (1516)
T KOG1832|consen 1246 L---NDG-----VLWDVRIPE------AIHRFDQFTDYGGGGFHPSGNEVIINSE--------IWDMRTFKLLHSVPSLD 1303 (1516)
T ss_pred e---eCc-----eeeeeccHH------HHhhhhhheecccccccCCCceEEeech--------hhhhHHHHHHhcCcccc
Confidence 4 455 489997654 3333332211 22358999999988764 89999999988766655
Q ss_pred eeeEEECCCCCEEEEE
Q 005140 558 ATDVEWDPTGRYVATA 573 (712)
Q Consensus 558 v~~~~~spdg~~l~t~ 573 (712)
-..+.|+..|..+...
T Consensus 1304 qc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1304 QCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred ceEEEeccCccchhhh
Confidence 6678899998865443
No 395
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.87 E-value=0.00045 Score=63.95 Aligned_cols=175 Identities=7% Similarity=0.042 Sum_probs=98.9
Q ss_pred EecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec--CCCeeEEEecCCCCEEEEEc
Q 005140 196 LWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA--HPQVKLIDFSPGEKYLVTYS 272 (712)
Q Consensus 196 ~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~--~~~v~~i~~Spdg~~l~t~s 272 (712)
.|+....-.+...+.+|+.+-.+-+.|--++.++++..+| +.+.+.+..++...+.. |.+-.+.+.-..+..|.++.
T Consensus 72 ~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~ 151 (319)
T KOG4714|consen 72 LWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGG 151 (319)
T ss_pred hhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCC
Confidence 5666555567777788888877778888889999999999 67888872222222221 22233333444555555543
Q ss_pred CCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCC-EEEEec-CCeEEEEEcCCc
Q 005140 273 SHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK-YFAKLG-KNMISVYETESF 350 (712)
Q Consensus 273 ~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~-~la~~~-d~~i~iwd~~~~ 350 (712)
-..... .+..++|+++..+ ++....... .+ -++++-.| ..+ .+++++ +|.+.+||....
T Consensus 152 ~g~~n~-----~d~~~a~~~~p~~---t~~~~~~~~--------~~--v~~l~~hp-~qq~~v~cgt~dg~~~l~d~rn~ 212 (319)
T KOG4714|consen 152 CGNWNA-----QDNFYANTLDPIK---TLIPSKKAL--------DA--VTALCSHP-AQQHLVCCGTDDGIVGLWDARNV 212 (319)
T ss_pred cceEee-----ccceeeecccccc---ccccccccc--------cc--chhhhCCc-ccccEEEEecCCCeEEEEEcccc
Confidence 320000 0234455543222 222111110 00 11456666 554 445555 999999999866
Q ss_pred eecc-cccccccCeeeEEECCC-CCeEEEEeecCCCCCCCeEEEEEec
Q 005140 351 TLID-KKSLKVENVMDFSWSPT-DPIISLFVPELGGGNQPARVSLVQI 396 (712)
Q Consensus 351 ~~~~-~~~~~~~~v~~~~~sp~-~~~la~~~~~~~~~~~~~~i~~~~~ 396 (712)
.... .+..|...+..+.|+|. +..|.+ ++.++ .+|.|+.
T Consensus 213 ~~p~S~l~ahk~~i~eV~FHpk~p~~Lft-----~sedG--slw~wda 253 (319)
T KOG4714|consen 213 AMPVSLLKAHKAEIWEVHFHPKNPEHLFT-----CSEDG--SLWHWDA 253 (319)
T ss_pred cchHHHHHHhhhhhhheeccCCCchheeE-----ecCCC--cEEEEcC
Confidence 4332 23456677999999997 456666 44444 4666654
No 396
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.86 E-value=0.00097 Score=70.22 Aligned_cols=201 Identities=15% Similarity=0.230 Sum_probs=99.3
Q ss_pred eeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccE
Q 005140 363 VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGF 442 (712)
Q Consensus 363 v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~ 442 (712)
...++++|+|+++++. +++...|+ ... ..+. ........+.|.+.+++ |+...... +
T Consensus 35 p~~ls~npngr~v~V~------g~geY~iy--t~~---~~r~--k~~G~g~~~vw~~~n~y-Av~~~~~~---------I 91 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLVC------GDGEYEIY--TAL---AWRN--KAFGSGLSFVWSSRNRY-AVLESSST---------I 91 (443)
T ss_dssp -SEEEE-TTSSEEEEE------ETTEEEEE--ETT---TTEE--EEEEE-SEEEE-TSSEE-EEE-TTS----------E
T ss_pred CeeEEECCCCCEEEEE------cCCEEEEE--Ecc---CCcc--cccCceeEEEEecCccE-EEEECCCe---------E
Confidence 6889999999999982 34443333 211 1122 22344556789996664 44433333 4
Q ss_pred EEEE-EecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEc
Q 005140 443 ELFR-IKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWS 521 (712)
Q Consensus 443 ~l~~-l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~s 521 (712)
.++. +.+. ....+.+ ...+..+-- |..|++.+.+ .|.+||+.++. .+..+.-.++..+.||
T Consensus 92 ~I~kn~~~~--~~k~i~~---~~~~~~If~---G~LL~~~~~~----~i~~yDw~~~~------~i~~i~v~~vk~V~Ws 153 (443)
T PF04053_consen 92 KIYKNFKNE--VVKSIKL---PFSVEKIFG---GNLLGVKSSD----FICFYDWETGK------LIRRIDVSAVKYVIWS 153 (443)
T ss_dssp EEEETTEE---TT--------SS-EEEEE----SSSEEEEETT----EEEEE-TTT--------EEEEESS-E-EEEEE-
T ss_pred EEEEcCccc--cceEEcC---CcccceEEc---CcEEEEECCC----CEEEEEhhHcc------eeeEEecCCCcEEEEE
Confidence 5542 1111 1112233 222333322 8888777653 59999997765 7888876678999999
Q ss_pred cCCCeEEEEeccCCCceEEEEECCcc-----------eeeee-cc-ccceeeEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 522 PSGRFIVLAGLKGFNGQLEFYNVDEL-----------ETMAT-AE-HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 522 pdg~~l~~~~~~~~dg~v~iwd~~~~-----------~~~~~-~~-~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
++|.+++..+ +..+.|++.+.- ..+.. .. ...|.+.+|.-| .++..+. +.++. =
T Consensus 154 ~~g~~val~t----~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~------~~lkY-l 220 (443)
T PF04053_consen 154 DDGELVALVT----KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTS------NHLKY-L 220 (443)
T ss_dssp TTSSEEEEE-----S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-T------TEEEE-E
T ss_pred CCCCEEEEEe----CCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcC------CeEEE-E
Confidence 9999999998 567888776532 02222 22 467889999877 4555544 35555 3
Q ss_pred ecCceeeeecc-cceeeeEEecCCCCCCCh
Q 005140 589 FNGKLLYRTLK-DHFFQFLWRPRPPSFLTP 617 (712)
Q Consensus 589 ~~g~~~~~~~~-~~i~~~~w~p~~~~l~s~ 617 (712)
+.|..-.-.+. .+++=+...|+...++..
T Consensus 221 ~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~ 250 (443)
T PF04053_consen 221 VNGETGIIAHLDKPLYLLGYLPKENRLYLI 250 (443)
T ss_dssp ETTEEEEEEE-SS--EEEEEETTTTEEEEE
T ss_pred EcCCcceEEEcCCceEEEEEEccCCEEEEE
Confidence 33432222222 345555566644444433
No 397
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.85 E-value=0.0032 Score=61.41 Aligned_cols=70 Identities=11% Similarity=0.061 Sum_probs=49.0
Q ss_pred ecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCC
Q 005140 261 FSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKN 340 (712)
Q Consensus 261 ~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~ 340 (712)
..+++.++++++.+ +.|..||..+|+.+..+....... . .. ... ++..++...++
T Consensus 32 ~~~~~~~v~~~~~~----------~~l~~~d~~tG~~~W~~~~~~~~~------------~-~~-~~~-~~~v~v~~~~~ 86 (238)
T PF13360_consen 32 AVPDGGRVYVASGD----------GNLYALDAKTGKVLWRFDLPGPIS------------G-AP-VVD-GGRVYVGTSDG 86 (238)
T ss_dssp EEEETTEEEEEETT----------SEEEEEETTTSEEEEEEECSSCGG------------S-GE-EEE-TTEEEEEETTS
T ss_pred EEEeCCEEEEEcCC----------CEEEEEECCCCCEEEEeecccccc------------c-ee-eec-cccccccccee
Confidence 34467777777777 899999999999988877643322 0 12 222 44555555588
Q ss_pred eEEEEEcCCceeccc
Q 005140 341 MISVYETESFTLIDK 355 (712)
Q Consensus 341 ~i~iwd~~~~~~~~~ 355 (712)
.+..+|..+|+.+..
T Consensus 87 ~l~~~d~~tG~~~W~ 101 (238)
T PF13360_consen 87 SLYALDAKTGKVLWS 101 (238)
T ss_dssp EEEEEETTTSCEEEE
T ss_pred eeEecccCCcceeee
Confidence 999999999988765
No 398
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.84 E-value=2.4e-05 Score=76.83 Aligned_cols=78 Identities=15% Similarity=0.283 Sum_probs=62.3
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
...+|||++||. +..+.+|+..|.+||.|.. +.+++|..+++.+||+||.|.+.+...+++.. ....|.++
T Consensus 96 ~tkkiFvGG~~~------~~~e~~~r~yfe~~g~v~~--~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-~f~~~~gk 166 (311)
T KOG4205|consen 96 RTKKIFVGGLPP------DTTEEDFKDYFEQFGKVAD--VVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-KFHDFNGK 166 (311)
T ss_pred ceeEEEecCcCC------CCchHHHhhhhhccceeEe--eEEeecccccccccceeeEeccccccceeccc-ceeeecCc
Confidence 456999999998 5559999999999999999 99999999999999999999998887777552 33344442
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|.+.
T Consensus 167 -~vevkrA 173 (311)
T KOG4205|consen 167 -KVEVKRA 173 (311)
T ss_pred -eeeEeec
Confidence 4445443
No 399
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=7.7e-05 Score=75.62 Aligned_cols=170 Identities=7% Similarity=0.088 Sum_probs=110.1
Q ss_pred CcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcc------eeeee-cCC-CeeEEEecCCCCEEEEEcCCC
Q 005140 205 PEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN------RLMRY-AHP-QVKLIDFSPGEKYLVTYSSHE 275 (712)
Q Consensus 205 ~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~------~~~~~-~~~-~v~~i~~Spdg~~l~t~s~d~ 275 (712)
....|.+|+..|+.++--.+.+-+++++.|+ |++|.+...+. ...++ .|. .|.++.|-.+-++++++..
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~-- 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDG-- 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccC--
Confidence 3446789999998887666777788999888 88998753222 22333 243 5999999999999998764
Q ss_pred CCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCC-CCCEE-EEec-CCeEEEEEcCCcee
Q 005140 276 PSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGG-KDKYF-AKLG-KNMISVYETESFTL 352 (712)
Q Consensus 276 ~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-dg~~l-a~~~-d~~i~iwd~~~~~~ 352 (712)
.|.+||.--|+++.......... .+. .+..-++ +...+ |.++ ..+++++|...+..
T Consensus 805 ----------giHlWDPFigr~Laq~~dapk~~------a~~-----~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~ 863 (1034)
T KOG4190|consen 805 ----------GIHLWDPFIGRLLAQMEDAPKEG------AGG-----NIKCLENVDRHILIAGCSAESTVKLFDARSCEW 863 (1034)
T ss_pred ----------cceeecccccchhHhhhcCcccC------CCc-----eeEecccCcchheeeeccchhhheeeecccccc
Confidence 48999987777766443221111 000 1222331 23333 3335 88999999987765
Q ss_pred cccccc-----cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceee
Q 005140 353 IDKKSL-----KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ 404 (712)
Q Consensus 353 ~~~~~~-----~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (712)
...... ...-+.+++..|.|+.++. +-..+.|.+++..+++.+..
T Consensus 864 ~~E~kVcna~~Pna~~R~iaVa~~GN~lAa-------~LSnGci~~LDaR~G~vINs 913 (1034)
T KOG4190|consen 864 TCELKVCNAPGPNALTRAIAVADKGNKLAA-------ALSNGCIAILDARNGKVINS 913 (1034)
T ss_pred eeeEEeccCCCCchheeEEEeccCcchhhH-------HhcCCcEEEEecCCCceecc
Confidence 443322 2334889999999999987 33344566677666665543
No 400
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.0024 Score=69.11 Aligned_cols=192 Identities=14% Similarity=0.143 Sum_probs=116.7
Q ss_pred EEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC-CEEEEe
Q 005140 259 IDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD-KYFAKL 337 (712)
Q Consensus 259 i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg-~~la~~ 337 (712)
-+|++.+..+|.|+.+ |.|.+.+ ..-+.++.|+.+...+. .+-|.- ++ .+|++.
T Consensus 29 sc~~s~~~~vvigt~~----------G~V~~Ln-~s~~~~~~fqa~~~siv-------------~~L~~~-~~~~~L~sv 83 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTAD----------GRVVILN-SSFQLIRGFQAYEQSIV-------------QFLYIL-NKQNFLFSV 83 (933)
T ss_pred eEEcCCCceEEEeecc----------ccEEEec-ccceeeehheecchhhh-------------hHhhcc-cCceEEEEE
Confidence 3578889999999999 8877776 34455588888766521 234454 44 577777
Q ss_pred c-C-C----eEEEEEcCCce------ec---cccc----ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecC-
Q 005140 338 G-K-N----MISVYETESFT------LI---DKKS----LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIP- 397 (712)
Q Consensus 338 ~-d-~----~i~iwd~~~~~------~~---~~~~----~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~- 397 (712)
+ | + .++||+++.-. .+ .... ....++.+++.|.+-+.+|+ |-.+|. |..+...
T Consensus 84 ~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~-----Gf~nG~--V~~~~GDi 156 (933)
T KOG2114|consen 84 GEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVC-----GFTNGL--VICYKGDI 156 (933)
T ss_pred eecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEE-----EecCcE--EEEEcCcc
Confidence 7 3 3 58999987331 11 0011 11234788899998888888 445554 4444332
Q ss_pred -Cccceeee--eeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeC
Q 005140 398 -SKEELRQK--NLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK 474 (712)
Q Consensus 398 -~~~~~~~~--~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~ 474 (712)
..+..+.. .....++..+.+..+|+.+++.+.... +.+|.+..++ | ....+..|..++.|-++++.
T Consensus 157 ~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~---------V~~y~l~gr~-p-~~~~ld~~G~~lnCss~~~~ 225 (933)
T KOG2114|consen 157 LRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQ---------VMLYSLSGRT-P-SLKVLDNNGISLNCSSFSDG 225 (933)
T ss_pred hhccccceeeeccCCCCceeeEEecCCceeEEEEecce---------eEEEEecCCC-c-ceeeeccCCccceeeecCCC
Confidence 21111111 112345556677777776443333322 6888888555 3 22336567788888888876
Q ss_pred CCEEEEEEcCCCCCeEEEEEeec
Q 005140 475 GHRFAVIHGDSPRPDISFYSMRT 497 (712)
Q Consensus 475 g~~l~~~~~d~~~~~v~i~d~~~ 497 (712)
...|++++.. .|.+|+.+.
T Consensus 226 t~qfIca~~e----~l~fY~sd~ 244 (933)
T KOG2114|consen 226 TYQFICAGSE----FLYFYDSDG 244 (933)
T ss_pred CccEEEecCc----eEEEEcCCC
Confidence 6546655554 599999864
No 401
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=0.00086 Score=71.83 Aligned_cols=167 Identities=13% Similarity=0.133 Sum_probs=107.4
Q ss_pred cccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEc
Q 005140 214 WTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDV 292 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~ 292 (712)
..++|++++ +++||.|..+| +.+.+..++. ...+.|... ..+|.|++||+.| |.|.|-.+
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~-----~~~Gey~asCS~D----------Gkv~I~sl 100 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS-----ILEGEYVASCSDD----------GKVVIGSL 100 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc-----ccCCceEEEecCC----------CcEEEeec
Confidence 567788887 78999999998 7798887332 333334333 5689999999999 99999999
Q ss_pred cCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCC-----CCEEEEec-CCeEEEEEcCCceecccccc--cccCee
Q 005140 293 RTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK-----DKYFAKLG-KNMISVYETESFTLIDKKSL--KVENVM 364 (712)
Q Consensus 293 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d-----g~~la~~~-d~~i~iwd~~~~~~~~~~~~--~~~~v~ 364 (712)
.+.+...++..+.... +++++| + .+.+++++ .| +.++.-.=.+-.....+ ..+.|.
T Consensus 101 ~~~~~~~~~df~rpik--------------sial~P-d~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~ 164 (846)
T KOG2066|consen 101 FTDDEITQYDFKRPIK--------------SIALHP-DFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIH 164 (846)
T ss_pred cCCccceeEecCCcce--------------eEEecc-chhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceE
Confidence 8888777666555443 578888 6 45677787 55 77776442111111112 234599
Q ss_pred eEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeee------eeecceeEEECcCCCEEE
Q 005140 365 DFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL------FSVSDCKMYWQSSGDYLA 425 (712)
Q Consensus 365 ~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------~~~~~~~~~~s~~g~~l~ 425 (712)
++.|. |++||. ++.. -|.+|+.+.++.+..... .....+.+.|.++.+.++
T Consensus 165 ~i~W~--g~lIAW-----and~---Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI 221 (846)
T KOG2066|consen 165 SIKWR--GNLIAW-----ANDD---GVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI 221 (846)
T ss_pred EEEec--CcEEEE-----ecCC---CcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE
Confidence 99996 677775 2222 245667766654433221 122345678888766543
No 402
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=97.80 E-value=4.9e-05 Score=80.43 Aligned_cols=72 Identities=19% Similarity=0.307 Sum_probs=62.9
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
.+++|||++||. ...|.+|..+|+.||+|.+ |.|.- ++|.|||.+..+.+|.+|+.+|+.+.+.++
T Consensus 420 ~SrTLwvG~i~k------~v~e~dL~~~feefGeiqS--i~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k 485 (894)
T KOG0132|consen 420 CSRTLWVGGIPK------NVTEQDLANLFEEFGEIQS--IILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADK 485 (894)
T ss_pred eeeeeeeccccc------hhhHHHHHHHHHhccccee--Eeecc------CCceeEEEEeehhHHHHHHHHHhcccccce
Confidence 689999999997 5569999999999999999 76653 679999999999999999999999998875
Q ss_pred eEEEEEe
Q 005140 138 HIFAVNM 144 (712)
Q Consensus 138 ~~l~v~~ 144 (712)
++++..
T Consensus 486 -~Iki~W 491 (894)
T KOG0132|consen 486 -TIKIAW 491 (894)
T ss_pred -eeEEee
Confidence 665554
No 403
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=97.80 E-value=1.9e-05 Score=73.50 Aligned_cols=71 Identities=14% Similarity=0.213 Sum_probs=60.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
.+.++.|+||.... ....|+..|.+||.|.+ +.+.. +|+||-|.-.++|..|++.|||..++|+
T Consensus 77 ~stkl~vgNis~tc------tn~ElRa~fe~ygpvie--cdivk--------dy~fvh~d~~eda~~air~l~~~~~~gk 140 (346)
T KOG0109|consen 77 ASTKLHVGNISPTC------TNQELRAKFEKYGPVIE--CDIVK--------DYAFVHFDRAEDAVEAIRGLDNTEFQGK 140 (346)
T ss_pred CccccccCCCCccc------cCHHHhhhhcccCCcee--eeeec--------ceeEEEEeeccchHHHHhcccccccccc
Confidence 57899999999633 36789999999999999 87765 4999999999999999999999999986
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|-.-
T Consensus 141 -~m~vq~s 147 (346)
T KOG0109|consen 141 -RMHVQLS 147 (346)
T ss_pred -eeeeeee
Confidence 5665543
No 404
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.79 E-value=0.013 Score=57.14 Aligned_cols=99 Identities=10% Similarity=0.039 Sum_probs=58.6
Q ss_pred CCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEe--CCCc----------eeEEEEccCCCeEEEEeccCCCceEEE
Q 005140 474 KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL--KGKQ----------ANALFWSPSGRFIVLAGLKGFNGQLEF 541 (712)
Q Consensus 474 ~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~--~~~~----------v~~l~~spdg~~l~~~~~~~~dg~v~i 541 (712)
.++.++++..++ .|..+|++++.. +... .... +..-....++ .+++++. ++.+.-
T Consensus 121 ~~~~~~~~~~~g---~l~~~d~~tG~~------~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~---~g~~~~ 187 (238)
T PF13360_consen 121 DGDRLYVGTSSG---KLVALDPKTGKL------LWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSG---DGRVVA 187 (238)
T ss_dssp ETTEEEEEETCS---EEEEEETTTTEE------EEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECC---TSSEEE
T ss_pred ecCEEEEEeccC---cEEEEecCCCcE------EEEeecCCCCCCcceeeecccccceEEECC-EEEEEcC---CCeEEE
Confidence 477787777766 788888876652 2222 1111 1122222345 6666555 665333
Q ss_pred EECCcceeeeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 542 YNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 542 wd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
+|+.+++.+-......+.. ...+++..|+.++. ++.+..||+..
T Consensus 188 ~d~~tg~~~w~~~~~~~~~-~~~~~~~~l~~~~~-----~~~l~~~d~~t 231 (238)
T PF13360_consen 188 VDLATGEKLWSKPISGIYS-LPSVDGGTLYVTSS-----DGRLYALDLKT 231 (238)
T ss_dssp EETTTTEEEEEECSS-ECE-CEECCCTEEEEEET-----TTEEEEEETTT
T ss_pred EECCCCCEEEEecCCCccC-CceeeCCEEEEEeC-----CCEEEEEECCC
Confidence 4999988664333222222 24577788888887 89999999873
No 405
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.78 E-value=0.0048 Score=65.43 Aligned_cols=114 Identities=11% Similarity=0.069 Sum_probs=83.5
Q ss_pred CCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee--cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEE
Q 005140 212 SYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY--AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVIN 288 (712)
Q Consensus 212 ~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~--~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~ 288 (712)
|...+..-+++..++||+.|+..| +.+|+-.+...++... .+..+..+..|++..++|.|+.. |.|.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~----------g~V~ 101 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTAS----------GRVS 101 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCC----------ceEE
Confidence 345566678888999999999999 7788887444444444 34447778899999999999988 9999
Q ss_pred EEEccCCce-----eeeccC-CCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCC
Q 005140 289 IFDVRTGKV-----MRDFKG-SADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETES 349 (712)
Q Consensus 289 iwd~~~g~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~ 349 (712)
++-+..+.. ++.+.. |...++ ++.|++ |+..+.+|. .|.|..-.+++
T Consensus 102 v~ql~~~~p~~~~~~t~~d~~~~~rVT-------------al~Ws~-~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 102 VFQLNKELPRDLDYVTPCDKSHKCRVT-------------ALEWSK-NGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eehhhccCCCcceeeccccccCCceEE-------------EEEecc-cccEEeecCCCceEEEEEech
Confidence 998765432 111111 223332 899999 999999999 89998888776
No 406
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.77 E-value=0.0065 Score=58.53 Aligned_cols=190 Identities=15% Similarity=0.226 Sum_probs=105.1
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEE
Q 005140 255 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYF 334 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~l 334 (712)
.+..|+|+|+.+.|++....+ +.|..++. +|+.++.+......- .-.+++.. ++.|+
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~---------~~i~els~-~G~vlr~i~l~g~~D------------~EgI~y~g-~~~~v 79 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEP---------GEIYELSL-DGKVLRRIPLDGFGD------------YEGITYLG-NGRYV 79 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTT---------TEEEEEET-T--EEEEEE-SS-SS------------EEEEEE-S-TTEEE
T ss_pred CccccEEcCCCCeEEEEECCC---------CEEEEEcC-CCCEEEEEeCCCCCC------------ceeEEEEC-CCEEE
Confidence 499999999877666555442 77888885 688888775442110 11578888 88888
Q ss_pred EEec-CCeEEEEEcCCce-ec-----cccc-----ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecC--Ccc
Q 005140 335 AKLG-KNMISVYETESFT-LI-----DKKS-----LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIP--SKE 400 (712)
Q Consensus 335 a~~~-d~~i~iwd~~~~~-~~-----~~~~-----~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~--~~~ 400 (712)
++.. ++.+.++++.... .+ .... .+..++-.++|.|.++.|.+ +....+..|+-++.. ...
T Consensus 80 l~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v-----~kE~~P~~l~~~~~~~~~~~ 154 (248)
T PF06977_consen 80 LSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFV-----AKERKPKRLYEVNGFPGGFD 154 (248)
T ss_dssp EEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEE-----EEESSSEEEEEEESTT-SS-
T ss_pred EEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEE-----EeCCCChhhEEEccccCccc
Confidence 8776 8999999884321 11 1111 12345889999999877776 334566677777651 111
Q ss_pred -------ceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCC-------CCce
Q 005140 401 -------ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNK-------NDKI 466 (712)
Q Consensus 401 -------~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h-------~~~v 466 (712)
.+.....+......++++|....|++.++... .|..++..+.+...+.|... -...
T Consensus 155 ~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~----------~l~~~d~~G~~~~~~~L~~g~~gl~~~~~Qp 224 (248)
T PF06977_consen 155 LFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESR----------LLLELDRQGRVVSSLSLDRGFHGLSKDIPQP 224 (248)
T ss_dssp -EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTT----------EEEEE-TT--EEEEEE-STTGGG-SS---SE
T ss_pred eeeccccccccccceeccccceEEcCCCCeEEEEECCCC----------eEEEECCCCCEEEEEEeCCcccCcccccCCc
Confidence 01111122223345677888888877777655 67777777777777777431 1257
Q ss_pred EEEEEeeCCCEEEEEEc
Q 005140 467 IAFAWEPKGHRFAVIHG 483 (712)
Q Consensus 467 ~~~~~sp~g~~l~~~~~ 483 (712)
-.+++.|+|+.+++ +.
T Consensus 225 EGIa~d~~G~LYIv-sE 240 (248)
T PF06977_consen 225 EGIAFDPDGNLYIV-SE 240 (248)
T ss_dssp EEEEE-TT--EEEE-ET
T ss_pred cEEEECCCCCEEEE-cC
Confidence 78999999865544 44
No 407
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.76 E-value=0.00011 Score=48.34 Aligned_cols=35 Identities=23% Similarity=0.452 Sum_probs=32.5
Q ss_pred EEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEE
Q 005140 457 LELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYS 494 (712)
Q Consensus 457 ~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d 494 (712)
..+.+|...|.+++|+|++.+|++++.|+ .|++||
T Consensus 5 ~~~~~h~~~i~~i~~~~~~~~~~s~~~D~---~i~vwd 39 (39)
T PF00400_consen 5 RTFRGHSSSINSIAWSPDGNFLASGSSDG---TIRVWD 39 (39)
T ss_dssp EEEESSSSSEEEEEEETTSSEEEEEETTS---EEEEEE
T ss_pred EEEcCCCCcEEEEEEecccccceeeCCCC---EEEEEC
Confidence 45678999999999999999999999999 999997
No 408
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.75 E-value=0.0086 Score=56.68 Aligned_cols=141 Identities=16% Similarity=0.180 Sum_probs=89.8
Q ss_pred ceEEEcCCC-cEEEEEecCc--eEEeecccCcceeeeecCC-C---eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEE
Q 005140 217 SFVQWSPLG-TYLATVHRQG--AAVWGGANTFNRLMRYAHP-Q---VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINI 289 (712)
Q Consensus 217 ~~v~~Spdg-~~lat~~~~~--i~iw~~~~~~~~~~~~~~~-~---v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~i 289 (712)
..++|+|.- .-++++-..| ..++|.. +.+........ + --.=.|||||.+|...-.| -+.+.|.|-|
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~-~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEnd-----fd~~rGViGv 144 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPN-GAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATEND-----FDPNRGVIGV 144 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCC-CCcCcEEEecccCceeecccccCCCCcEEEeecCC-----CCCCCceEEE
Confidence 347899864 5577777777 4589988 55544444322 1 2234699999999877666 2445589999
Q ss_pred EEccCC-ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCC-------------------eEEEEEcCC
Q 005140 290 FDVRTG-KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKN-------------------MISVYETES 349 (712)
Q Consensus 290 wd~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~-------------------~i~iwd~~~ 349 (712)
||.+.+ ..+..+..+..... .+.|.+ ||..++....| ++.+.+..+
T Consensus 145 Yd~r~~fqrvgE~~t~GiGpH-------------ev~lm~-DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~at 210 (366)
T COG3490 145 YDAREGFQRVGEFSTHGIGPH-------------EVTLMA-DGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAAT 210 (366)
T ss_pred EecccccceecccccCCcCcc-------------eeEEec-CCcEEEEeCCceecccccCccccchhhcCccEEEEeccc
Confidence 998644 33555655543221 588999 99998876521 244555566
Q ss_pred ceeccccccc----ccCeeeEEECCCCCeEEE
Q 005140 350 FTLIDKKSLK----VENVMDFSWSPTDPIISL 377 (712)
Q Consensus 350 ~~~~~~~~~~----~~~v~~~~~sp~~~~la~ 377 (712)
|.++.+..+. .-.+..++..+||..++-
T Consensus 211 G~liekh~Lp~~l~~lSiRHld~g~dgtvwfg 242 (366)
T COG3490 211 GNLIEKHTLPASLRQLSIRHLDIGRDGTVWFG 242 (366)
T ss_pred cchhhhccCchhhhhcceeeeeeCCCCcEEEE
Confidence 6666655433 234677777777766553
No 409
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.75 E-value=0.013 Score=61.88 Aligned_cols=142 Identities=14% Similarity=0.182 Sum_probs=79.6
Q ss_pred ccceEEEcCCCcEEEEEecCceEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC
Q 005140 215 TESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT 294 (712)
Q Consensus 215 ~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~ 294 (712)
....++++|+|++++.++...-.|+... ....... ..-....|++.++|.+. ... .+|.|+.--+
T Consensus 34 ~p~~ls~npngr~v~V~g~geY~iyt~~-~~r~k~~---G~g~~~vw~~~n~yAv~-~~~----------~~I~I~kn~~ 98 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLVCGDGEYEIYTAL-AWRNKAF---GSGLSFVWSSRNRYAVL-ESS----------STIKIYKNFK 98 (443)
T ss_dssp --SEEEE-TTSSEEEEEETTEEEEEETT-TTEEEEE---EE-SEEEE-TSSEEEEE--TT----------S-EEEEETTE
T ss_pred CCeeEEECCCCCEEEEEcCCEEEEEEcc-CCccccc---CceeEEEEecCccEEEE-ECC----------CeEEEEEcCc
Confidence 3577999999999999665556677754 3333222 23567889997775544 435 6788874223
Q ss_pred CceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceecccccccccCeeeEEECCCCCe
Q 005140 295 GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPI 374 (712)
Q Consensus 295 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 374 (712)
....+.+..+... -..- .|.+|+..+++.|.+||..+++.+... ...+|..+.||++|.+
T Consensus 99 ~~~~k~i~~~~~~----------------~~If--~G~LL~~~~~~~i~~yDw~~~~~i~~i--~v~~vk~V~Ws~~g~~ 158 (443)
T PF04053_consen 99 NEVVKSIKLPFSV----------------EKIF--GGNLLGVKSSDFICFYDWETGKLIRRI--DVSAVKYVIWSDDGEL 158 (443)
T ss_dssp E-TT-----SS-E----------------EEEE---SSSEEEEETTEEEEE-TTT--EEEEE--SS-E-EEEEE-TTSSE
T ss_pred cccceEEcCCccc----------------ceEE--cCcEEEEECCCCEEEEEhhHcceeeEE--ecCCCcEEEEECCCCE
Confidence 3332334333211 0111 367888888789999999999888654 3445899999999999
Q ss_pred EEEEeecCCCCCCCeEEEEEecC
Q 005140 375 ISLFVPELGGGNQPARVSLVQIP 397 (712)
Q Consensus 375 la~~~~~~~~~~~~~~i~~~~~~ 397 (712)
++.. ......|..++..
T Consensus 159 val~------t~~~i~il~~~~~ 175 (443)
T PF04053_consen 159 VALV------TKDSIYILKYNLE 175 (443)
T ss_dssp EEEE-------S-SEEEEEE-HH
T ss_pred EEEE------eCCeEEEEEecch
Confidence 9984 3456667777665
No 410
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.72 E-value=0.045 Score=57.95 Aligned_cols=97 Identities=11% Similarity=0.094 Sum_probs=55.4
Q ss_pred CCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeec
Q 005140 474 KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATA 553 (712)
Q Consensus 474 ~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~ 553 (712)
.+..+++++.++ .+..+|..++... +. ...+......+... .+.+|++++. +|.|+++|..+++.+...
T Consensus 293 ~~~~vy~~~~~g---~l~ald~~tG~~~--W~-~~~~~~~~~~sp~v--~~g~l~v~~~---~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 293 DGGRIYLVDQND---RVYALDTRGGVEL--WS-QSDLLHRLLTAPVL--YNGYLVVGDS---EGYLHWINREDGRFVAQQ 361 (394)
T ss_pred ECCEEEEEcCCC---eEEEEECCCCcEE--Ec-ccccCCCcccCCEE--ECCEEEEEeC---CCEEEEEECCCCCEEEEE
Confidence 466777777777 7888888665421 00 00111111222222 2456777776 999999999999887653
Q ss_pred cc--ccee-eEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 554 EH--FMAT-DVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 554 ~~--~~v~-~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
.. ..+. .... .+..|+.++. +|.++.++
T Consensus 362 ~~~~~~~~s~P~~--~~~~l~v~t~-----~G~l~~~~ 392 (394)
T PRK11138 362 KVDSSGFLSEPVV--ADDKLLIQAR-----DGTVYAIT 392 (394)
T ss_pred EcCCCcceeCCEE--ECCEEEEEeC-----CceEEEEe
Confidence 22 2222 2222 2346777777 77776654
No 411
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.0017 Score=69.74 Aligned_cols=129 Identities=17% Similarity=0.302 Sum_probs=85.9
Q ss_pred cCCCcEEEEEecCc-eEEeecccCcceeeeecC-CCeeEEEecCC-----CCEEEEEcCCCCCCCcCCCccEEEEEEccC
Q 005140 222 SPLGTYLATVHRQG-AAVWGGANTFNRLMRYAH-PQVKLIDFSPG-----EKYLVTYSSHEPSNPRDANRVVINIFDVRT 294 (712)
Q Consensus 222 Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~-~~v~~i~~Spd-----g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~ 294 (712)
.-+|.|+||++.|| +.|-.+- +.+...++.. ..+.+++++|+ .+.+++|+.. | +.++.-.
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~-~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~a----------g-lvL~er~- 146 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLF-TDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMA----------G-LVLSERN- 146 (846)
T ss_pred ccCCceEEEecCCCcEEEeecc-CCccceeEecCCcceeEEeccchhhhhhhheeecCcc----------e-EEEehhh-
Confidence 45799999999999 7777776 6666666653 45999999998 5678888887 7 6666421
Q ss_pred CceeeeccCCCcc-cccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceecccccccccC------eeeEE
Q 005140 295 GKVMRDFKGSADE-FAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVEN------VMDFS 367 (712)
Q Consensus 295 g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~~~------v~~~~ 367 (712)
+-+.... +.....+.+. ++.| .|++||-++|-.|+|||+.+.+.+......... -..+.
T Consensus 147 ------wlgnk~~v~l~~~eG~I~-----~i~W---~g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~ 212 (846)
T KOG2066|consen 147 ------WLGNKDSVVLSEGEGPIH-----SIKW---RGNLIAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLH 212 (846)
T ss_pred ------hhcCccceeeecCccceE-----EEEe---cCcEEEEecCCCcEEEeccccceeeccCCCCCCCCcccCCCceE
Confidence 1111111 1111222233 4677 568999999989999999988766543322222 34678
Q ss_pred ECCCCCeEEE
Q 005140 368 WSPTDPIISL 377 (712)
Q Consensus 368 ~sp~~~~la~ 377 (712)
|.+..+.+.-
T Consensus 213 W~~~~~LVIG 222 (846)
T KOG2066|consen 213 WQDEDRLVIG 222 (846)
T ss_pred ecCCCeEEEe
Confidence 8888777764
No 412
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.67 E-value=6.7e-05 Score=70.92 Aligned_cols=76 Identities=18% Similarity=0.272 Sum_probs=64.5
Q ss_pred CCCEEEECCCCC-CCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 58 FGNIIVVDNLPV-VPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 58 ~~~~~~v~~lp~-~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
-...+||+|+-. ++ -..+...|+.+|.|.. +.||.|+.+|.+||||||+|.+.+.+.+|+. |||..+.+
T Consensus 100 d~~sv~v~nvd~~~t-------~~~~e~hf~~Cg~i~~--~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~ 169 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVT-------LTKIELHFESCGGINR--VTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPG 169 (231)
T ss_pred CCceEEEeccccccc-------cchhhheeeccCCccc--eeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccc
Confidence 356899999995 33 2238899999999988 9999999999999999999999999999999 99999988
Q ss_pred ceEEEEEe
Q 005140 137 AHIFAVNM 144 (712)
Q Consensus 137 ~~~l~v~~ 144 (712)
. .+.|..
T Consensus 170 ~-~i~vt~ 176 (231)
T KOG4209|consen 170 P-AIEVTL 176 (231)
T ss_pred c-cceeee
Confidence 6 444444
No 413
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.62 E-value=3.1e-05 Score=69.06 Aligned_cols=69 Identities=17% Similarity=0.365 Sum_probs=62.0
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
+.+|||.|+-. .+.|+.|.++|-+.|.|.+ +.||.++ .++.| ||||+|.++-....|++.+||..+.+.
T Consensus 9 drtl~v~n~~~------~v~eelL~ElfiqaGPV~k--v~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~ 77 (267)
T KOG4454|consen 9 DRTLLVQNMYS------GVSEELLSELFIQAGPVYK--VGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEED 77 (267)
T ss_pred hhHHHHHhhhh------hhhHHHHHHHhhccCceEE--EeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccc
Confidence 45899999996 5668889999999999999 9999998 77888 999999999999999999999888764
No 414
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.60 E-value=0.013 Score=64.39 Aligned_cols=214 Identities=14% Similarity=0.111 Sum_probs=111.4
Q ss_pred CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecC-CCCCCCeEEEEEecCCccceeeeeeeeecceeEEE
Q 005140 339 KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPEL-GGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYW 417 (712)
Q Consensus 339 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (712)
+|.+.-.+-.....+.........+...+.||+|..+++..... ...+....||+.+..... .... .........|
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~--~~lt-~g~~~t~PsW 404 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA--VQVL-EGHSLTRPSW 404 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc--eeee-cCCCCCCceE
Confidence 66665443222222222222334578899999999998754211 013455688888753221 1111 1123456789
Q ss_pred CcCCCEEEEEEcccccc-cccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEee
Q 005140 418 QSSGDYLAVKVDRYTKT-KKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMR 496 (712)
Q Consensus 418 s~~g~~l~~~~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~ 496 (712)
+|+|..|++..+..... .......-.+|.+...+..... .+ .+.|.++.|||||.++++... + .|.+--+.
T Consensus 405 spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~-~~---~g~Issl~wSpDG~RiA~i~~-g---~v~Va~Vv 476 (591)
T PRK13616 405 SLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS-RV---PGPISELQLSRDGVRAAMIIG-G---KVYLAVVE 476 (591)
T ss_pred CCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh-cc---CCCcCeEEECCCCCEEEEEEC-C---EEEEEEEE
Confidence 99999988876542200 0000011234433322211111 22 567999999999999999874 4 67764443
Q ss_pred c-ccccCceeEEEEeC---CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeee-ec--cccceeeEEECC
Q 005140 497 T-AQHAGRVSKLTTLK---GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA-TA--EHFMATDVEWDP 565 (712)
Q Consensus 497 ~-~~~~~~~~~~~~~~---~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~-~~--~~~~v~~~~~sp 565 (712)
. ..+..++.....+. ...+.++.|.+++..+ ++..+. +..+...+++...... .. ....+..++=++
T Consensus 477 r~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~-~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~ 550 (591)
T PRK13616 477 QTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDP-EHPVWYVNLDGSNSDALPSRNLSAPVVAVAASP 550 (591)
T ss_pred eCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCC-CCceEEEecCCccccccCCCCccCceEEEecCC
Confidence 2 12211121112222 2235789999999865 444322 4456556666332211 11 235566666665
No 415
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.57 E-value=0.0019 Score=59.89 Aligned_cols=71 Identities=13% Similarity=0.243 Sum_probs=53.4
Q ss_pred ceEEEEEeeCCC-EEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEcc-CCCeEEEEeccCCCceEE
Q 005140 465 KIIAFAWEPKGH-RFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSP-SGRFIVLAGLKGFNGQLE 540 (712)
Q Consensus 465 ~v~~~~~sp~g~-~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~sp-dg~~l~~~~~~~~dg~v~ 540 (712)
.|.+++-+|..+ .+++++.+| .+.+||++.... +...+. ..+++.+-|+| ++..|++++. ||.+.
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg---~~~l~d~rn~~~-----p~S~l~ahk~~i~eV~FHpk~p~~Lft~se---dGslw 249 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDG---IVGLWDARNVAM-----PVSLLKAHKAEIWEVHFHPKNPEHLFTCSE---DGSLW 249 (319)
T ss_pred cchhhhCCcccccEEEEecCCC---eEEEEEcccccc-----hHHHHHHhhhhhhheeccCCCchheeEecC---CCcEE
Confidence 488999999655 455556677 899999976532 333333 33789999999 5678999988 99999
Q ss_pred EEECCc
Q 005140 541 FYNVDE 546 (712)
Q Consensus 541 iwd~~~ 546 (712)
-||..+
T Consensus 250 ~wdas~ 255 (319)
T KOG4714|consen 250 HWDAST 255 (319)
T ss_pred EEcCCC
Confidence 999884
No 416
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.55 E-value=0.082 Score=55.85 Aligned_cols=58 Identities=21% Similarity=0.228 Sum_probs=42.1
Q ss_pred CceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee---ccccceeeEEECCCCCEEEEE
Q 005140 513 KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT---AEHFMATDVEWDPTGRYVATA 573 (712)
Q Consensus 513 ~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~---~~~~~v~~~~~spdg~~l~t~ 573 (712)
+++..++.||+|++||.-.. +|.+.+.+.+-.+.+.. ........+.|.-+...++..
T Consensus 217 ~~i~~iavSpng~~iAl~t~---~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~ 277 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTD---SGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW 277 (410)
T ss_pred CCeEEEEECCCCCEEEEEEC---CCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe
Confidence 57899999999999999887 89999988764444433 223466678888776544444
No 417
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.55 E-value=5.4e-05 Score=78.35 Aligned_cols=77 Identities=27% Similarity=0.424 Sum_probs=66.9
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
...|+|+|||. ..++..++++...||.+.. ..+..|..+|.+|||||.+|-++.....|+..|||+.+.++
T Consensus 289 ~~ki~v~~lp~------~l~~~q~~Ell~~fg~lk~--f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~- 359 (500)
T KOG0120|consen 289 PNKIFVGGLPL------YLTEDQVKELLDSFGPLKA--FRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDK- 359 (500)
T ss_pred cchhhhccCcC------ccCHHHHHHHHHhcccchh--heeecccccccccceeeeeeeCCcchhhhhcccchhhhcCc-
Confidence 36899999996 3347888999999999988 88999999999999999999999999999999999999876
Q ss_pred EEEEEe
Q 005140 139 IFAVNM 144 (712)
Q Consensus 139 ~l~v~~ 144 (712)
.+.|-.
T Consensus 360 ~lvvq~ 365 (500)
T KOG0120|consen 360 KLVVQR 365 (500)
T ss_pred eeEeeh
Confidence 444443
No 418
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.55 E-value=0.0012 Score=71.62 Aligned_cols=117 Identities=9% Similarity=0.091 Sum_probs=82.6
Q ss_pred CcEEEEEe-cCceEEeecccCcceeeeec--CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeec
Q 005140 225 GTYLATVH-RQGAAVWGGANTFNRLMRYA--HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDF 301 (712)
Q Consensus 225 g~~lat~~-~~~i~iw~~~~~~~~~~~~~--~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~ 301 (712)
+..++.|+ .+.++.+|.. +.+.....+ .++|.-+. .++++|.+|... |+|.+-|..+.+.+++|
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~-~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~----------G~V~LrD~~s~~~iht~ 213 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLN-TEKETRTTNVSASGVTIMR--YNNRNLFCGDTR----------GTVFLRDPNSFETIHTF 213 (1118)
T ss_pred Ccceeecchhhheeeeecc-cceeeeeeeccCCceEEEE--ecCcEEEeeccc----------ceEEeecCCcCceeeee
Confidence 33444444 4447788887 555555444 33444444 468899999988 99999999999999999
Q ss_pred cCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-C---------CeEEEEEcCCceecccccccccCeeeEEECCC
Q 005140 302 KGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-K---------NMISVYETESFTLIDKKSLKVENVMDFSWSPT 371 (712)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d---------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~ 371 (712)
..|.+.+ ..|.- .|+.|++++ . .-|+|||+...+.+....++.++ .-+.|.|.
T Consensus 214 ~aHs~si---------------SDfDv-~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Ps 276 (1118)
T KOG1275|consen 214 DAHSGSI---------------SDFDV-QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPS 276 (1118)
T ss_pred eccccce---------------eeeec-cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhccc
Confidence 9998876 46666 788888886 2 34889999988877655555443 44556665
No 419
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.54 E-value=0.032 Score=53.47 Aligned_cols=167 Identities=15% Similarity=0.265 Sum_probs=108.1
Q ss_pred CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCC--cccccCCCCCcCCCCcCeEEecCCC
Q 005140 253 HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSA--DEFAVGGTGGVAGVSWPVFRWGGGK 330 (712)
Q Consensus 253 ~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~d 330 (712)
+.++.+++|+|+.+.|++.... ..-.||=..+|+.+++++... +.- .+.|.. +
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~----------p~~iVElt~~GdlirtiPL~g~~DpE--------------~Ieyig-~ 139 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNK----------PAAIVELTKEGDLIRTIPLTGFSDPE--------------TIEYIG-G 139 (316)
T ss_pred cccccceeeCCCcceEEEecCC----------CceEEEEecCCceEEEecccccCChh--------------HeEEec-C
Confidence 3459999999999999888776 344466567899999876543 222 578888 8
Q ss_pred CCEEEEec-CCeEEEEEcCCce-ecc---------cccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc
Q 005140 331 DKYFAKLG-KNMISVYETESFT-LID---------KKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 399 (712)
Q Consensus 331 g~~la~~~-d~~i~iwd~~~~~-~~~---------~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 399 (712)
|+|.++-- ++.+.++.+.... .+. .......+...++|.|.+..|.+ +..-.+..|+.++....
T Consensus 140 n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~-----aKEr~P~~I~~~~~~~~ 214 (316)
T COG3204 140 NQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFV-----AKERNPIGIFEVTQSPS 214 (316)
T ss_pred CEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEE-----EEccCCcEEEEEecCCc
Confidence 88877776 8888888766432 111 11112446789999999988887 44667888888874331
Q ss_pred c--------ceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEe
Q 005140 400 E--------ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL 459 (712)
Q Consensus 400 ~--------~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 459 (712)
. +-....++-.+...+.+++....|++-++... .+..++..+.++..+.+
T Consensus 215 ~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr----------~l~Evd~~G~~~~~lsL 272 (316)
T COG3204 215 SLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESR----------RLLEVDLSGEVIELLSL 272 (316)
T ss_pred ccccccccCcccccceEeeccccceecCCCCcEEEEecCCc----------eEEEEecCCCeeeeEEe
Confidence 1 11122233344445677877777777666543 45555555555555555
No 420
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.53 E-value=0.013 Score=62.29 Aligned_cols=114 Identities=21% Similarity=0.248 Sum_probs=80.7
Q ss_pred CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccC--CCcccccCCCCCcCCCCcCeEEecCCC
Q 005140 253 HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKG--SADEFAVGGTGGVAGVSWPVFRWGGGK 330 (712)
Q Consensus 253 ~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~d 330 (712)
+..|.--+++..++||+.|+.. |.+.+|+-..|+. +.++. .....+ ....|+ +
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~----------G~lyl~~R~~~~~-~~~~~~~~~~~~~-------------~~~vs~-~ 87 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSA----------GSVYLYNRHTGEM-RKLKNEGATGITC-------------VRSVSS-V 87 (726)
T ss_pred cceEEEEEeecCCceEEEeccc----------ceEEEEecCchhh-hcccccCccceEE-------------EEEecc-h
Confidence 3447788889999999999999 9999999655543 33332 222221 467788 8
Q ss_pred CCEEEEec-CCeEEEEEcCCceecccc------cccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCC
Q 005140 331 DKYFAKLG-KNMISVYETESFTLIDKK------SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS 398 (712)
Q Consensus 331 g~~la~~~-d~~i~iwd~~~~~~~~~~------~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~ 398 (712)
+.++|.++ .|.|.++-+.....-... ..|...|++++|++++..+.+ +|..++|....+.+
T Consensus 88 e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ys-------GD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 88 EYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYS-------GDSQGKVVLTELDS 155 (726)
T ss_pred hHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEee-------cCCCceEEEEEech
Confidence 88888888 889999987753221111 113446999999999999998 77777777766655
No 421
>PRK10115 protease 2; Provisional
Probab=97.51 E-value=0.076 Score=60.10 Aligned_cols=249 Identities=11% Similarity=0.097 Sum_probs=122.3
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEE
Q 005140 256 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA 335 (712)
Q Consensus 256 v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la 335 (712)
+..+.|||||++|+.+... .+.....|++.|+.+|..+........ . .++|++ |++.|+
T Consensus 129 l~~~~~Spdg~~la~~~d~-----~G~E~~~l~v~d~~tg~~l~~~i~~~~-~--------------~~~w~~-D~~~~~ 187 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDF-----LSRRQYGIRFRNLETGNWYPELLDNVE-P--------------SFVWAN-DSWTFY 187 (686)
T ss_pred EeEEEECCCCCEEEEEecC-----CCcEEEEEEEEECCCCCCCCccccCcc-e--------------EEEEee-CCCEEE
Confidence 6788999999999877544 222236789999988864322111111 1 589999 998776
Q ss_pred Eec--C-----CeEEEEEcCCceeccccccc--ccCee-eEEECCCCCeEEEEeecCCCCCCCeEEEEEec--CCcccee
Q 005140 336 KLG--K-----NMISVYETESFTLIDKKSLK--VENVM-DFSWSPTDPIISLFVPELGGGNQPARVSLVQI--PSKEELR 403 (712)
Q Consensus 336 ~~~--d-----~~i~iwd~~~~~~~~~~~~~--~~~v~-~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~--~~~~~~~ 403 (712)
... + ..|..+++.++......... ..... .+..+.+++++++... ......+++++. +......
T Consensus 188 y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~----~~~~~~~~l~~~~~~~~~~~~ 263 (686)
T PRK10115 188 YVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLA----SATTSEVLLLDAELADAEPFV 263 (686)
T ss_pred EEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEE----CCccccEEEEECcCCCCCceE
Confidence 654 2 35666777665211111111 11122 3333447887765322 333345666663 2222111
Q ss_pred eeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCC-C-CceEEEEEeeCCCEEEEE
Q 005140 404 QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNK-N-DKIIAFAWEPKGHRFAVI 481 (712)
Q Consensus 404 ~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h-~-~~v~~~~~sp~g~~l~~~ 481 (712)
.. .............+..+.+.++.+.. ...|+.+.... +.....+..+ . ..+..+.++ +++|++.
T Consensus 264 ~~--~~~~~~~~~~~~~~~~ly~~tn~~~~-------~~~l~~~~~~~-~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~ 331 (686)
T PRK10115 264 FL--PRRKDHEYSLDHYQHRFYLRSNRHGK-------NFGLYRTRVRD-EQQWEELIPPRENIMLEGFTLF--TDWLVVE 331 (686)
T ss_pred EE--ECCCCCEEEEEeCCCEEEEEEcCCCC-------CceEEEecCCC-cccCeEEECCCCCCEEEEEEEE--CCEEEEE
Confidence 11 01111111122234555555543221 13444444321 1111222233 2 367777776 5577776
Q ss_pred EcCCCCCeEEEEEeecccccCceeEEEEeC-CC--ceeEEEEc--cCCC-eEEEEeccCCCceEEEEECCcce
Q 005140 482 HGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GK--QANALFWS--PSGR-FIVLAGLKGFNGQLEFYNVDELE 548 (712)
Q Consensus 482 ~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~--~v~~l~~s--pdg~-~l~~~~~~~~dg~v~iwd~~~~~ 548 (712)
..++....+.+++..++ .+..+. .. .+..+.++ +++. +++..+.-...+.++.+|..+++
T Consensus 332 ~~~~g~~~l~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 332 ERQRGLTSLRQINRKTR-------EVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEeCCEEEEEEEcCCCC-------ceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 66554445666665322 122222 11 22333445 4444 44444333347889999988654
No 422
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.51 E-value=0.0007 Score=65.15 Aligned_cols=83 Identities=19% Similarity=0.212 Sum_probs=70.3
Q ss_pred cCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeec------eEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 005140 56 SGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKED------GLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKT 129 (712)
Q Consensus 56 ~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~------~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~ 129 (712)
......|||.|||- +++-..+.++|+++|.|.++ -|.|=.|. .|+.||=|.+.|-..++...|++.|
T Consensus 131 ~~~Nt~VYVsgLP~------DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~il 203 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPL------DITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKIL 203 (382)
T ss_pred cccCceEEecCCCC------cccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHh
Confidence 34567799999997 66688899999999998764 46666776 5999999999999999999999999
Q ss_pred CCCccCCceEEEEEeec
Q 005140 130 NGYKLDRAHIFAVNMFD 146 (712)
Q Consensus 130 ~~~~~~~~~~l~v~~~~ 146 (712)
|+..|.| +.++|....
T Consensus 204 De~~~rg-~~~rVerAk 219 (382)
T KOG1548|consen 204 DEDELRG-KKLRVERAK 219 (382)
T ss_pred CcccccC-cEEEEehhh
Confidence 9999987 488887643
No 423
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.50 E-value=0.081 Score=50.36 Aligned_cols=101 Identities=10% Similarity=0.053 Sum_probs=66.5
Q ss_pred eeEEEecCCCCEE-EEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEE
Q 005140 256 VKLIDFSPGEKYL-VTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYF 334 (712)
Q Consensus 256 v~~i~~Spdg~~l-~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~l 334 (712)
...|+|+|.-..- +.+-.. . .-..++|..+++.+.++.......- .| .-.||| ||.+|
T Consensus 70 ~Hgi~~~p~~~ravafARrP-G--------tf~~vfD~~~~~~pv~~~s~~~RHf-------yG----HGvfs~-dG~~L 128 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRP-G--------TFAMVFDPNGAQEPVTLVSQEGRHF-------YG----HGVFSP-DGRLL 128 (366)
T ss_pred cCCeecCCCCcceEEEEecC-C--------ceEEEECCCCCcCcEEEecccCcee-------ec----ccccCC-CCcEE
Confidence 5678899976544 444433 1 2356889877776666655444321 11 347899 99999
Q ss_pred EEec------CCeEEEEEcCCc-eecccccccccCeeeEEECCCCCeEEE
Q 005140 335 AKLG------KNMISVYETESF-TLIDKKSLKVENVMDFSWSPTDPIISL 377 (712)
Q Consensus 335 a~~~------d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~~~~la~ 377 (712)
...- -|.|-|||...+ ..+.....+.-+-..+.|.+||+.|++
T Consensus 129 YATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvv 178 (366)
T COG3490 129 YATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVV 178 (366)
T ss_pred EeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEE
Confidence 8765 377999998732 233334444446788999999999998
No 424
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.50 E-value=0.00027 Score=68.00 Aligned_cols=70 Identities=26% Similarity=0.350 Sum_probs=56.7
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHh-CCCccCCc
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKT-NGYKLDRA 137 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~-~~~~~~~~ 137 (712)
..+|||+||-. ..++.+|++.|-+||+|.. +.+... +|.|||+|.+++.|+.|.+.. |-..++|.
T Consensus 228 I~tLyIg~l~d------~v~e~dIrdhFyqyGeirs--i~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~ 293 (377)
T KOG0153|consen 228 IKTLYIGGLND------EVLEQDIRDHFYQYGEIRS--IRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGF 293 (377)
T ss_pred eeEEEeccccc------chhHHHHHHHHhhcCCeee--EEeecc------cccceeeehhhHHHHHHHHhhcceeeecce
Confidence 46999999976 6679999999999999999 776543 369999999999999999874 54556664
Q ss_pred eEEEEE
Q 005140 138 HIFAVN 143 (712)
Q Consensus 138 ~~l~v~ 143 (712)
.+++.
T Consensus 294 -Rl~i~ 298 (377)
T KOG0153|consen 294 -RLKIK 298 (377)
T ss_pred -EEEEE
Confidence 55554
No 425
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=0.00063 Score=69.25 Aligned_cols=259 Identities=13% Similarity=0.096 Sum_probs=137.7
Q ss_pred CCCEEEEec-CCeEEEEEcCC-ce------ecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccc
Q 005140 330 KDKYFAKLG-KNMISVYETES-FT------LIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE 401 (712)
Q Consensus 330 dg~~la~~~-d~~i~iwd~~~-~~------~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~ 401 (712)
+.+-+++++ |+++++|.+.. +. .......|...|.++.|-.+.+++++ .|+.+.+|.-= ..+.
T Consensus 746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S-------cD~giHlWDPF--igr~ 816 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS-------CDGGIHLWDPF--IGRL 816 (1034)
T ss_pred cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee-------ccCcceeeccc--ccch
Confidence 445556666 99999999862 21 22334557778999999999988887 66666665422 2222
Q ss_pred eeee----eeeeecceeEEECcCCCEEEEE-EcccccccccccccEEEEEEecCCcceeEE--EecCCCCceEEEEEeeC
Q 005140 402 LRQK----NLFSVSDCKMYWQSSGDYLAVK-VDRYTKTKKSTYTGFELFRIKERDIPIEVL--ELDNKNDKIIAFAWEPK 474 (712)
Q Consensus 402 ~~~~----~~~~~~~~~~~~s~~g~~l~~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~l~~h~~~v~~~~~sp~ 474 (712)
+.+. .-..+..+...-+-+...+..+ +...+ +++++.+..+...+.. ..++.+..+.+++..|.
T Consensus 817 Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeST---------VKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~ 887 (1034)
T KOG4190|consen 817 LAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAEST---------VKLFDARSCEWTCELKVCNAPGPNALTRAIAVADK 887 (1034)
T ss_pred hHhhhcCcccCCCceeEecccCcchheeeeccchhh---------heeeecccccceeeEEeccCCCCchheeEEEeccC
Confidence 1110 0000111111111122233332 22222 4555554432221111 12344677899999999
Q ss_pred CCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEE-EccCCCeEEEEeccCCCceEEE-EECCcceeeee
Q 005140 475 GHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALF-WSPSGRFIVLAGLKGFNGQLEF-YNVDELETMAT 552 (712)
Q Consensus 475 g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~-~spdg~~l~~~~~~~~dg~v~i-wd~~~~~~~~~ 552 (712)
|++++++-..| .|.+.|.+++.. +.+.....+.-+. -.|..+.|+.... |..+.+ |-.-.+....+
T Consensus 888 GN~lAa~LSnG---ci~~LDaR~G~v------INswrpmecdllqlaapsdq~L~~sal---dHslaVnWhaldgimh~q 955 (1034)
T KOG4190|consen 888 GNKLAAALSNG---CIAILDARNGKV------INSWRPMECDLLQLAAPSDQALAQSAL---DHSLAVNWHALDGIMHLQ 955 (1034)
T ss_pred cchhhHHhcCC---cEEEEecCCCce------eccCCcccchhhhhcCchhHHHHhhcc---cceeEeeehhcCCeeeec
Confidence 99999999888 899999887652 3322211111111 1355566666665 778877 76554443333
Q ss_pred ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCce-----eeee----cccceeeeEEecCCCCCCChhhHHHH
Q 005140 553 AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKL-----LYRT----LKDHFFQFLWRPRPPSFLTPEKEEEI 623 (712)
Q Consensus 553 ~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~-----~~~~----~~~~i~~~~w~p~~~~l~s~~~d~~i 623 (712)
....+-..--.-.-|.-++++.. .+.+.+|.-.+.. +.+. -.+..+.++--|-...++.+.+.+.|
T Consensus 956 ~kpppepahflqsvgpSLV~a~~-----Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~I 1030 (1034)
T KOG4190|consen 956 DKPPPEPAHFLQSVGPSLVTAQN-----GNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAI 1030 (1034)
T ss_pred cCCCCcchhhhhccCceeEEecc-----CcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCce
Confidence 21111110011123556777776 6777777543321 1122 22456677777766666666655544
No 426
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.49 E-value=0.00026 Score=67.31 Aligned_cols=76 Identities=24% Similarity=0.451 Sum_probs=53.8
Q ss_pred CCEEEECCCC-CCCchhhhhhHHHHH--HHhhccCeeeeceEEEeccCCC---CCcccE--EEEEeCCHHHHHHHHHHhC
Q 005140 59 GNIIVVDNLP-VVPKEKFEKLEGVIR--KIYSQIGVIKEDGLWMPVDPET---QKSLGY--CFIEYNTPQEAELAKEKTN 130 (712)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~~~~~l~--~~f~~~g~v~~~~~~~~~d~~~---~~~~g~--~fv~~~~~~~a~~a~~~~~ 130 (712)
.+.+||.||| .|+.| -...+|+ +.|++||.|.+ |-+ ++.| ..+.|- -+|+|.+.++|.+||...+
T Consensus 114 KNLvYVigi~pkva~E---e~~~vLk~~eyFGQyGkI~K--Ivv--Nkkt~s~nst~~h~gvYITy~~kedAarcIa~vD 186 (480)
T COG5175 114 KNLVYVIGIPPKVADE---EVAPVLKRHEYFGQYGKIKK--IVV--NKKTSSLNSTASHAGVYITYSTKEDAARCIAEVD 186 (480)
T ss_pred cceeEEecCCCCCCcc---cccccccchhhhhhccceeE--EEe--cccccccccccccceEEEEecchHHHHHHHHHhc
Confidence 3678999999 45441 1122454 88999999987 544 3322 122332 3999999999999999999
Q ss_pred CCccCCceEEEE
Q 005140 131 GYKLDRAHIFAV 142 (712)
Q Consensus 131 ~~~~~~~~~l~v 142 (712)
|..+||+ .+++
T Consensus 187 gs~~DGr-~lka 197 (480)
T COG5175 187 GSLLDGR-VLKA 197 (480)
T ss_pred cccccCc-eEee
Confidence 9999997 4443
No 427
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.49 E-value=0.0067 Score=66.62 Aligned_cols=147 Identities=11% Similarity=0.088 Sum_probs=83.8
Q ss_pred CCCcccceEEEcCCCcEEEEEe------cCc-eEEe--ecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCC--CC
Q 005140 211 RSYWTESFVQWSPLGTYLATVH------RQG-AAVW--GGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPS--NP 279 (712)
Q Consensus 211 ~~~~~v~~v~~Spdg~~lat~~------~~~-i~iw--~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~--~~ 279 (712)
+....+..+++||||+.+|+.. .+. -.|| +..+....+ . .........|||||+.|++.+..... -.
T Consensus 347 g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l-t-~g~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 347 GQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV-L-EGHSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred ccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceee-e-cCCCCCCceECCCCCceEEEecCcceEEEe
Confidence 3334678899999999998876 233 3455 433122222 1 22248899999999988887643100 00
Q ss_pred cCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEE---EEcCCce-ec-c
Q 005140 280 RDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISV---YETESFT-LI-D 354 (712)
Q Consensus 280 ~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~i---wd~~~~~-~~-~ 354 (712)
.....+.+.+.++..+.....+.+ .+. .++||| ||+.+|...++.|.+ -....|. .+ .
T Consensus 425 ~~~~~gql~~~~vd~ge~~~~~~g---~Is-------------sl~wSp-DG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~ 487 (591)
T PRK13616 425 RDPATGQLARTPVDASAVASRVPG---PIS-------------ELQLSR-DGVRAAMIIGGKVYLAVVEQTEDGQYALTN 487 (591)
T ss_pred ccCCCceEEEEeccCchhhhccCC---CcC-------------eEEECC-CCCEEEEEECCEEEEEEEEeCCCCceeecc
Confidence 011113454445544433221111 121 699999 999999988888877 3333443 11 1
Q ss_pred c--ccccccC-eeeEEECCCCCeEE
Q 005140 355 K--KSLKVEN-VMDFSWSPTDPIIS 376 (712)
Q Consensus 355 ~--~~~~~~~-v~~~~~sp~~~~la 376 (712)
. ....... +.++.|.+++.+++
T Consensus 488 ~~~l~~~l~~~~~~l~W~~~~~L~V 512 (591)
T PRK13616 488 PREVGPGLGDTAVSLDWRTGDSLVV 512 (591)
T ss_pred cEEeecccCCccccceEecCCEEEE
Confidence 1 1112223 57899999998553
No 428
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.47 E-value=0.25 Score=55.19 Aligned_cols=321 Identities=11% Similarity=0.102 Sum_probs=149.8
Q ss_pred ceEEEcCCCcEEEEEecCceEEe-ecccCcceeeee-cC---CCeeEEEecCCC------CEEEEEcCCCCCCCcCCCcc
Q 005140 217 SFVQWSPLGTYLATVHRQGAAVW-GGANTFNRLMRY-AH---PQVKLIDFSPGE------KYLVTYSSHEPSNPRDANRV 285 (712)
Q Consensus 217 ~~v~~Spdg~~lat~~~~~i~iw-~~~~~~~~~~~~-~~---~~v~~i~~Spdg------~~l~t~s~d~~~~~~~~~~~ 285 (712)
++...+.+...++.++.++..++ +.. ... +... ++ ..|.|+.++|-| ++++.|..+. -
T Consensus 491 ti~~~~~n~sqVvvA~~~~~l~y~~i~-~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~---------~ 559 (1096)
T KOG1897|consen 491 TIGVVSANASQVVVAGGGLALFYLEIE-DGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSD---------I 559 (1096)
T ss_pred EEEEEeecceEEEEecCccEEEEEEee-ccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecc---------e
Confidence 33444444555555555553333 333 222 2222 22 249999999853 2677777661 2
Q ss_pred EEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEc--CCceecccccccc--
Q 005140 286 VINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYET--ESFTLIDKKSLKV-- 360 (712)
Q Consensus 286 ~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~--~~~~~~~~~~~~~-- 360 (712)
.+.+.-+.+...+.........+ ++++. ...+-. |..||.++. ||.+.-|-+ .++..-..++.+.
T Consensus 560 ~~~l~~~pd~~~~~~~~l~~~~i-------PRSIl--~~~~e~-d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt 629 (1096)
T KOG1897|consen 560 SMILTFLPDLILITHEQLSGEII-------PRSIL--LTTFEG-DIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGT 629 (1096)
T ss_pred EEEEEECCCcceeeeeccCCCcc-------chhee--eEEeec-cceEEEEEcCCceEEEEEEEcccceEccccccccCC
Confidence 23333334444443332221111 22221 234555 677777776 998876654 4555554443333
Q ss_pred cCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcC-CCEEEEEEccccccccccc
Q 005140 361 ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSS-GDYLAVKVDRYTKTKKSTY 439 (712)
Q Consensus 361 ~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~l~~~~~~~~~~~~~~~ 439 (712)
.++.--.|+..++.-++ +..+.+.-++..+.. -.+...++......+..-++. +..++.+..+.
T Consensus 630 ~P~~Lr~f~sk~~t~vf-----a~sdrP~viY~~n~k--Lv~spls~kev~~~c~f~s~a~~d~l~~~~~~~-------- 694 (1096)
T KOG1897|consen 630 QPISLRTFSSKSRTAVF-----ALSDRPTVIYSSNGK--LVYSPLSLKEVNHMCPFNSDAYPDSLASANGGA-------- 694 (1096)
T ss_pred CCcEEEEEeeCCceEEE-----EeCCCCEEEEecCCc--EEEeccchHHhhhhcccccccCCceEEEecCCc--------
Confidence 34444455555433333 236666555443211 011111111111111111222 22444433332
Q ss_pred ccEEEEEEec-CCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCC--------C---CCeEEEEEeecccccCceeEE
Q 005140 440 TGFELFRIKE-RDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDS--------P---RPDISFYSMRTAQHAGRVSKL 507 (712)
Q Consensus 440 ~~~~l~~l~~-~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~--------~---~~~v~i~d~~~~~~~~~~~~~ 507 (712)
+.+..+++ ....+.++.+ ......+++.+....+++.+... . ...++++|-++-. .+
T Consensus 695 --l~i~tid~iqkl~irtvpl---~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~------vl 763 (1096)
T KOG1897|consen 695 --LTIGTIDEIQKLHIRTVPL---GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFE------VL 763 (1096)
T ss_pred --eEEEEecchhhcceeeecC---CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCcee------EE
Confidence 34554443 1222333444 55667778877555555544321 1 1134455543211 22
Q ss_pred EEeC--CC----ceeEEEEccC-CCeEEEEecc-------CCCceEEEEECCcceeeeeccc----cceeeEEECCCCCE
Q 005140 508 TTLK--GK----QANALFWSPS-GRFIVLAGLK-------GFNGQLEFYNVDELETMATAEH----FMATDVEWDPTGRY 569 (712)
Q Consensus 508 ~~~~--~~----~v~~l~~spd-g~~l~~~~~~-------~~dg~v~iwd~~~~~~~~~~~~----~~v~~~~~spdg~~ 569 (712)
...+ .. .+.+..|..| +.++++|..- ...|.|.+|....+..+...+. +.+.++. --+|++
T Consensus 764 ~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~-~fngkl 842 (1096)
T KOG1897|consen 764 SSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALV-EFNGKL 842 (1096)
T ss_pred eeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehh-hhCCeE
Confidence 2221 11 3455668777 7787777531 1368899988876444443332 3333322 135777
Q ss_pred EEEEEccceeccccEEEEEecCc
Q 005140 570 VATAVTSVHEMENGFNIWSFNGK 592 (712)
Q Consensus 570 l~t~s~~~~~~d~~v~iw~~~g~ 592 (712)
||.-.. .+++|++..+
T Consensus 843 lA~In~-------~vrLye~t~~ 858 (1096)
T KOG1897|consen 843 LAGINQ-------SVRLYEWTTE 858 (1096)
T ss_pred EEecCc-------EEEEEEcccc
Confidence 776654 7888887643
No 429
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.014 Score=57.84 Aligned_cols=240 Identities=14% Similarity=0.170 Sum_probs=131.2
Q ss_pred eEEecCCCCC-EEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc
Q 005140 323 VFRWGGGKDK-YFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE 400 (712)
Q Consensus 323 ~~~~s~~dg~-~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~ 400 (712)
.++||| ... ++..++ ++.|+|.|+.+...+.....+ ..+.+.+|.-+....++. ++..+.|++||+...+
T Consensus 198 dlafSp-~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa------Gl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 198 DLAFSP-FNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA------GLQNGMVLVYDMRQPE 269 (463)
T ss_pred hhccCc-cccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE------eccCceEEEEEccCCC
Confidence 588999 666 566666 999999999988776555444 568999999988777762 5666777888875533
Q ss_pred c--------eeeeeeeeecceeE-EECcCCCEEEEEEcccccccccccccEEEEEEecC-CcceeEEEecCCCCceEEEE
Q 005140 401 E--------LRQKNLFSVSDCKM-YWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKER-DIPIEVLELDNKNDKIIAFA 470 (712)
Q Consensus 401 ~--------~~~~~~~~~~~~~~-~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~l~~h~~~v~~~~ 470 (712)
. +...+++....+.- .-.+.|.+|+..... +..|.+... +.+....++ +..+...+++
T Consensus 270 ~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~-----------l~f~ei~~s~~~~p~vlel-e~pG~cismq 337 (463)
T KOG1645|consen 270 GPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV-----------LQFYEIVFSAECLPCVLEL-EPPGICISMQ 337 (463)
T ss_pred chHhhhhhhhccCcceeecccCccccccccceEEeeehh-----------hhhhhhhccccCCCccccc-CCCcceeeee
Confidence 1 11111111111100 123345555554443 344544322 222222333 3356777888
Q ss_pred EeeCCCEEEEEEcCC-CCCeEEEE--EeecccccCceeEEEEeCCC------ceeEEEEccCCCeEEEEeccCCCceEEE
Q 005140 471 WEPKGHRFAVIHGDS-PRPDISFY--SMRTAQHAGRVSKLTTLKGK------QANALFWSPSGRFIVLAGLKGFNGQLEF 541 (712)
Q Consensus 471 ~sp~g~~l~~~~~d~-~~~~v~i~--d~~~~~~~~~~~~~~~~~~~------~v~~l~~spdg~~l~~~~~~~~dg~v~i 541 (712)
..+..+.+++..... ..+++++- .++...+..-|..-....+. .-..+.=.++..+|+..+. ....+.+
T Consensus 338 y~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd--~tn~lil 415 (463)
T KOG1645|consen 338 YHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGD--STNELIL 415 (463)
T ss_pred ecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecC--CcceeEE
Confidence 888777776665532 22233321 11111111111111111111 1122333556666665442 2688999
Q ss_pred EECCcceeeeeccc-cceeeEEECC-C-CCEEEEEEccceeccccEEEEEec
Q 005140 542 YNVDELETMATAEH-FMATDVEWDP-T-GRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 542 wd~~~~~~~~~~~~-~~v~~~~~sp-d-g~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
||..+++++.+..- .++.+++... + +.||++-+ |..++||...
T Consensus 416 ~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LT------d~~v~Iyk~e 461 (463)
T KOG1645|consen 416 QDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLT------DDRVHIYKNE 461 (463)
T ss_pred eccchhheeeecccCcceeecceeecCCcchhhhee------cceEEEEecC
Confidence 99999988877433 5666665443 2 34666555 4677777643
No 430
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.027 Score=61.34 Aligned_cols=224 Identities=12% Similarity=0.116 Sum_probs=121.9
Q ss_pred EEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCC-CeEEEEeecCCCCCCCeEEEEEecCCc--
Q 005140 324 FRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTD-PIISLFVPELGGGNQPARVSLVQIPSK-- 399 (712)
Q Consensus 324 ~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~-~~la~~~~~~~~~~~~~~i~~~~~~~~-- 399 (712)
-+|++ .+..++.++ +|.|.+++-. .+.+........++..+-|.-++ .+|++.+.+. .+++..+.+|++...
T Consensus 29 sc~~s-~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~--~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 29 SCCSS-STGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDE--QGNPVLLKIWDLEKVDK 104 (933)
T ss_pred eEEcC-CCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecC--CCCceEEEEecccccCC
Confidence 47888 888888888 9998887643 22323333333333333444444 4555543332 224445555554322
Q ss_pred ----cceeeeeee-------eecceeEEECcCCCEEEEEEcccccccccccccEEEEEE---ecCCcceeEEEecCCCCc
Q 005140 400 ----EELRQKNLF-------SVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRI---KERDIPIEVLELDNKNDK 465 (712)
Q Consensus 400 ----~~~~~~~~~-------~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l---~~~~~~~~~~~l~~h~~~ 465 (712)
..+..+..+ ......++.+.+-+.+++|-.++. +.++.- ++.+.. ..-.....++
T Consensus 105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~---------V~~~~GDi~RDrgsr--~~~~~~~~~p 173 (933)
T KOG2114|consen 105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGL---------VICYKGDILRDRGSR--QDYSHRGKEP 173 (933)
T ss_pred CCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcE---------EEEEcCcchhccccc--eeeeccCCCC
Confidence 122111111 223344566777778888777765 333321 122221 1111233789
Q ss_pred eEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEeccCCCceEEEEE
Q 005140 466 IIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYN 543 (712)
Q Consensus 466 v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd 543 (712)
|+.+++..+++.++.+.... .|.+|.+.... . ....+. |.+.+|-.+++....+++++ +..|.+|+
T Consensus 174 ITgL~~~~d~~s~lFv~Tt~---~V~~y~l~gr~-p----~~~~ld~~G~~lnCss~~~~t~qfIca~----~e~l~fY~ 241 (933)
T KOG2114|consen 174 ITGLALRSDGKSVLFVATTE---QVMLYSLSGRT-P----SLKVLDNNGISLNCSSFSDGTYQFICAG----SEFLYFYD 241 (933)
T ss_pred ceeeEEecCCceeEEEEecc---eeEEEEecCCC-c----ceeeeccCCccceeeecCCCCccEEEec----CceEEEEc
Confidence 99999999998844444434 79999997332 1 233233 44678888887665466655 57899999
Q ss_pred CCcceeeeeccccceeeEEECCCCCEEEEEE
Q 005140 544 VDELETMATAEHFMATDVEWDPTGRYVATAV 574 (712)
Q Consensus 544 ~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s 574 (712)
.+....-.+...+.-.-+-|...|.+|+...
T Consensus 242 sd~~~~cfaf~~g~kk~~~~~~~g~~L~v~~ 272 (933)
T KOG2114|consen 242 SDGRGPCFAFEVGEKKEMLVFSFGLLLCVTT 272 (933)
T ss_pred CCCcceeeeecCCCeEEEEEEecCEEEEEEc
Confidence 9865544443322222344444455555443
No 431
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.45 E-value=0.00011 Score=75.40 Aligned_cols=66 Identities=26% Similarity=0.377 Sum_probs=58.1
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
..+|+|-|||. .+.+..|+.+|+.||+|++ |.+ |-..+|.+||+|-+..+|+.|++.||+..+.++
T Consensus 75 ~~~L~v~nl~~------~Vsn~~L~~~f~~yGeir~--ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~ 140 (549)
T KOG4660|consen 75 QGTLVVFNLPR------SVSNDTLLRIFGAYGEIRE--IRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGK 140 (549)
T ss_pred cceEEEEecCC------cCCHHHHHHHHHhhcchhh--hhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhh
Confidence 46899999997 4448999999999999988 544 667889999999999999999999999998876
No 432
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.42 E-value=0.022 Score=54.90 Aligned_cols=183 Identities=9% Similarity=0.134 Sum_probs=99.4
Q ss_pred eeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEc-CCCCCeEE
Q 005140 413 CKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDIS 491 (712)
Q Consensus 413 ~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~-d~~~~~v~ 491 (712)
..++|+|+...|++..+... .|+.++..+..+..+.+.+ .+....+++.-++.+ +.... ++ .+.
T Consensus 25 SGLTy~pd~~tLfaV~d~~~----------~i~els~~G~vlr~i~l~g-~~D~EgI~y~g~~~~-vl~~Er~~---~L~ 89 (248)
T PF06977_consen 25 SGLTYNPDTGTLFAVQDEPG----------EIYELSLDGKVLRRIPLDG-FGDYEGITYLGNGRY-VLSEERDQ---RLY 89 (248)
T ss_dssp EEEEEETTTTEEEEEETTTT----------EEEEEETT--EEEEEE-SS--SSEEEEEE-STTEE-EEEETTTT---EEE
T ss_pred cccEEcCCCCeEEEEECCCC----------EEEEEcCCCCEEEEEeCCC-CCCceeEEEECCCEE-EEEEcCCC---cEE
Confidence 34689999888887777654 6788887777777777744 567888888766654 44443 55 888
Q ss_pred EEEeecccccCceeEEEEeC-------CCceeEEEEccCCCeEEEEeccCCCceEEEEECCc----ceee--e-------
Q 005140 492 FYSMRTAQHAGRVSKLTTLK-------GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE----LETM--A------- 551 (712)
Q Consensus 492 i~d~~~~~~~~~~~~~~~~~-------~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~----~~~~--~------- 551 (712)
++++..............+. +...-.++|+|.++.|+++.. ..-..+|.+.. .... .
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE---~~P~~l~~~~~~~~~~~~~~~~~~~~~~~ 166 (248)
T PF06977_consen 90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE---RKPKRLYEVNGFPGGFDLFVSDDQDLDDD 166 (248)
T ss_dssp EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE---SSSEEEEEEESTT-SS--EEEE-HHHH-H
T ss_pred EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC---CCChhhEEEccccCccceeeccccccccc
Confidence 88885432221122222221 124678999999888888865 33344444432 1111 1
Q ss_pred eccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCceeeeecc-----------cceeeeEEecCCCCCCCh
Q 005140 552 TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLK-----------DHFFQFLWRPRPPSFLTP 617 (712)
Q Consensus 552 ~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~~~-----------~~i~~~~w~p~~~~l~s~ 617 (712)
......+++++++|....|..-|.. ...+.++|.+|+.+..... .+.-.+++.|+|+..+++
T Consensus 167 ~~~~~d~S~l~~~p~t~~lliLS~e----s~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 167 KLFVRDLSGLSYDPRTGHLLILSDE----SRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp T--SS---EEEEETTTTEEEEEETT----TTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred cceeccccceEEcCCCCeEEEEECC----CCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 1223457789999976544444442 6788888888876554321 346779999999765543
No 433
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0099 Score=59.64 Aligned_cols=243 Identities=12% Similarity=0.032 Sum_probs=145.2
Q ss_pred CCcccceEEEcCCCcEEEEEecCc-eEEeeccc-Ccceeee-e-cCCC-eeEEEecCCCCEEEEEcC-CCCCCCcCCCcc
Q 005140 212 SYWTESFVQWSPLGTYLATVHRQG-AAVWGGAN-TFNRLMR-Y-AHPQ-VKLIDFSPGEKYLVTYSS-HEPSNPRDANRV 285 (712)
Q Consensus 212 ~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~-~~~~~~~-~-~~~~-v~~i~~Spdg~~l~t~s~-d~~~~~~~~~~~ 285 (712)
|...|+.+.-+ --+++.+++-|| ++.|.-.. .+..... + .|-. +.+++.|-+|..+.|.+. | .
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~D----------h 76 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPD----------H 76 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcc----------c
Confidence 45556555443 457899999999 88998662 1221111 1 2333 889999999999999776 7 7
Q ss_pred EEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC--C-EEEEec--CCeEEEEEcCCc--eecccccc
Q 005140 286 VINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD--K-YFAKLG--KNMISVYETESF--TLIDKKSL 358 (712)
Q Consensus 286 ~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg--~-~la~~~--d~~i~iwd~~~~--~~~~~~~~ 358 (712)
.++++|+.+-..+.-++...-+- .+.|....| . .||... ++.+.|+|-... .......+
T Consensus 77 s~KvfDvEn~DminmiKL~~lPg--------------~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkkl 142 (558)
T KOG0882|consen 77 SVKVFDVENFDMINMIKLVDLPG--------------FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKL 142 (558)
T ss_pred ceeEEEeeccchhhhcccccCCC--------------ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceeccc
Confidence 89999987655443332221111 233322122 1 444444 899999996532 33444567
Q ss_pred cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCC-ccc----e----------eeeeeeeecceeEEECcCCCE
Q 005140 359 KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS-KEE----L----------RQKNLFSVSDCKMYWQSSGDY 423 (712)
Q Consensus 359 ~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~-~~~----~----------~~~~~~~~~~~~~~~s~~g~~ 423 (712)
|..+|..+.++|.+..+++ .+..+.|-.|..+. .+- + ....-......++.++|+|..
T Consensus 143 H~sPV~~i~y~qa~Ds~vS-------iD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~q 215 (558)
T KOG0882|consen 143 HFSPVKKIRYNQAGDSAVS-------IDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQ 215 (558)
T ss_pred ccCceEEEEeeccccceee-------ccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCc
Confidence 8889999999999988887 66666777776652 110 0 011112334456788999998
Q ss_pred EEEEEcccccccccccccEEEEEEecCC-------------------cceeEEE----------ecCCC-CceEEEEEee
Q 005140 424 LAVKVDRYTKTKKSTYTGFELFRIKERD-------------------IPIEVLE----------LDNKN-DKIIAFAWEP 473 (712)
Q Consensus 424 l~~~~~~~~~~~~~~~~~~~l~~l~~~~-------------------~~~~~~~----------l~~h~-~~v~~~~~sp 473 (712)
+.....+.. +.++.+.... ..+..++ +.-|. ..-+.+.|..
T Consensus 216 istl~~Drk---------VR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fde 286 (558)
T KOG0882|consen 216 ISTLNPDRK---------VRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDE 286 (558)
T ss_pred ccccCcccE---------EEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcC
Confidence 888776654 3333332110 0000011 11122 2344678888
Q ss_pred CCCEEEEEEcCCCCCeEEEEEeeccc
Q 005140 474 KGHRFAVIHGDSPRPDISFYSMRTAQ 499 (712)
Q Consensus 474 ~g~~l~~~~~d~~~~~v~i~d~~~~~ 499 (712)
.|++|+.++--| |++.++.++.
T Consensus 287 s~~flly~t~~g----ikvin~~tn~ 308 (558)
T KOG0882|consen 287 SGNFLLYGTILG----IKVINLDTNT 308 (558)
T ss_pred CCCEEEeeccee----EEEEEeecCe
Confidence 999999988765 7888887643
No 434
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.36 E-value=0.19 Score=53.10 Aligned_cols=48 Identities=15% Similarity=0.364 Sum_probs=36.9
Q ss_pred EEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcC
Q 005140 286 VINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETE 348 (712)
Q Consensus 286 ~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~ 348 (712)
.|.||+. .|+.+.++.-..+.+. .+.|+. +..+++...+|.+++|++.
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv-------------~~~wt~-~e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIV-------------GMGWTD-DEELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEE-------------EEEECC-CCeEEEEEcCCEEEEEeCC
Confidence 4888884 7777777655444332 689999 8888888889999999986
No 435
>PRK10115 protease 2; Provisional
Probab=97.34 E-value=0.16 Score=57.57 Aligned_cols=117 Identities=10% Similarity=0.013 Sum_probs=70.5
Q ss_pred CcccceEEEcCCCcEEEEEecCc------eEEeecccCcceeee-ecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCcc
Q 005140 213 YWTESFVQWSPLGTYLATVHRQG------AAVWGGANTFNRLMR-YAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRV 285 (712)
Q Consensus 213 ~~~v~~v~~Spdg~~lat~~~~~------i~iw~~~~~~~~~~~-~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~ 285 (712)
.+.+..+.|||||++||.+...+ +.+.++. ++..+.. +.... ..++|++|++.|+....++. .....
T Consensus 126 ~~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~-tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~~~----~~~~~ 199 (686)
T PRK10115 126 FYTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLE-TGNWYPELLDNVE-PSFVWANDSWTFYYVRKHPV----TLLPY 199 (686)
T ss_pred cEEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECC-CCCCCCccccCcc-eEEEEeeCCCEEEEEEecCC----CCCCC
Confidence 36778899999999999876432 5577877 4442221 11112 46999999998887766421 01125
Q ss_pred EEEEEEccCC--ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec----CCeEEEEEcC
Q 005140 286 VINIFDVRTG--KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG----KNMISVYETE 348 (712)
Q Consensus 286 ~I~iwd~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~----d~~i~iwd~~ 348 (712)
.|+.+++.++ +....+....... |.....+. ++++++..+ ++.+.+|+..
T Consensus 200 ~v~~h~lgt~~~~d~lv~~e~~~~~------------~~~~~~s~-d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 200 QVWRHTIGTPASQDELVYEEKDDTF------------YVSLHKTT-SKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred EEEEEECCCChhHCeEEEeeCCCCE------------EEEEEEcC-CCCEEEEEEECCccccEEEEECc
Confidence 7899999888 3333444322221 11233455 777655333 5678888853
No 436
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.34 E-value=0.0003 Score=72.02 Aligned_cols=75 Identities=24% Similarity=0.393 Sum_probs=57.1
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceE
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~ 139 (712)
..|||.|||. +++...|++.|.+||.|++.+|.+-. + .++...||||+|.+.+.++.|+..- -..+++ +.
T Consensus 289 ~~i~V~nlP~------da~~~~l~~~Fk~FG~Ik~~~I~vr~-~-~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~-~k 358 (419)
T KOG0116|consen 289 LGIFVKNLPP------DATPAELEEVFKQFGPIKEGGIQVRS-P-GGKNPCFGFVEFENAAAVQNAIEAS-PLEIGG-RK 358 (419)
T ss_pred cceEeecCCC------CCCHHHHHHHHhhcccccccceEEec-c-CCCcCceEEEEEeecchhhhhhhcC-ccccCC-ee
Confidence 4499999998 67788899999999999996665544 2 2344499999999999999998853 444444 46
Q ss_pred EEEEe
Q 005140 140 FAVNM 144 (712)
Q Consensus 140 l~v~~ 144 (712)
+.|-.
T Consensus 359 l~Vee 363 (419)
T KOG0116|consen 359 LNVEE 363 (419)
T ss_pred EEEEe
Confidence 66554
No 437
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.33 E-value=0.00067 Score=65.38 Aligned_cols=125 Identities=10% Similarity=0.163 Sum_probs=90.1
Q ss_pred CCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEcc-CCCeEEEEeccCCCceEEE
Q 005140 463 NDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSP-SGRFIVLAGLKGFNGQLEF 541 (712)
Q Consensus 463 ~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~~~~~~~~dg~v~i 541 (712)
.+.|.++.|...++.+..|...| .|..+|++.+..........-+++..++++..-. ++++|.+.+. +|.|.+
T Consensus 252 ksDVfAlQf~~s~nLv~~GcRng---eI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M---~gkikL 325 (425)
T KOG2695|consen 252 KSDVFALQFAGSDNLVFNGCRNG---EIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDM---TGKIKL 325 (425)
T ss_pred chhHHHHHhcccCCeeEecccCC---cEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccC---cCceeE
Confidence 67788888988888888888888 8999999876432223334444556778777655 6788888887 999999
Q ss_pred EECCccee---eee--ccccc--eeeEEECCCCCEEEEEEccceeccccEEEEEec-Cceeeeec
Q 005140 542 YNVDELET---MAT--AEHFM--ATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRTL 598 (712)
Q Consensus 542 wd~~~~~~---~~~--~~~~~--v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~~ 598 (712)
||++-.+. +.+ +|... -.-+...+....|++++. |.-.+||.+. |.++.+.+
T Consensus 326 yD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~Gd-----DcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 326 YDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGD-----DCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred eeehhhhcccceeeeecccccccccccccccccceEEEccC-----eeEEEEEecccCceeeccC
Confidence 99985544 333 34322 223455677778888888 9999999998 66666553
No 438
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.32 E-value=0.002 Score=57.92 Aligned_cols=77 Identities=16% Similarity=0.213 Sum_probs=55.7
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEec-cCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc-
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPV-DPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA- 137 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~-d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~- 137 (712)
+++||.|||. ++--..|.-+|-.|-.-.. ..+-+ ++..+-.+-+||++|.+..+|..|++.|||..+|-.
T Consensus 35 RTLFVSGLP~------DvKpREiynLFR~f~GYEg--slLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~ 106 (284)
T KOG1457|consen 35 RTLFVSGLPN------DVKPREIYNLFRRFHGYEG--SLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPET 106 (284)
T ss_pred ceeeeccCCc------ccCHHHHHHHhccCCCccc--eeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeecccc
Confidence 5999999996 4446678888988743333 44433 333344568999999999999999999999999753
Q ss_pred -eEEEEEe
Q 005140 138 -HIFAVNM 144 (712)
Q Consensus 138 -~~l~v~~ 144 (712)
.+|..-.
T Consensus 107 ~stLhiEl 114 (284)
T KOG1457|consen 107 GSTLHIEL 114 (284)
T ss_pred CceeEeee
Confidence 2444443
No 439
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.31 E-value=0.45 Score=53.25 Aligned_cols=360 Identities=13% Similarity=0.151 Sum_probs=177.6
Q ss_pred ceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCC------cEEEEEecCc-e-EEeecccCcceeeee--c
Q 005140 183 DQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLG------TYLATVHRQG-A-AVWGGANTFNRLMRY--A 252 (712)
Q Consensus 183 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg------~~lat~~~~~-i-~iw~~~~~~~~~~~~--~ 252 (712)
.|.++..++...++-.....+-.+.....-...|.|+.+||-| +++|.|.-+. + .|--.+ ....+... .
T Consensus 500 sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~p-d~~~~~~~~l~ 578 (1096)
T KOG1897|consen 500 SQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLP-DLILITHEQLS 578 (1096)
T ss_pred eEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECC-CcceeeeeccC
Confidence 3555555544444444422221111111123578999999853 3777777665 2 233333 33333322 1
Q ss_pred C---C-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEc--cCCcee--eeccCCCcccccCCCCCcCCCCcCeE
Q 005140 253 H---P-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDV--RTGKVM--RDFKGSADEFAVGGTGGVAGVSWPVF 324 (712)
Q Consensus 253 ~---~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~--~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (712)
. + .|...+|--|..||+++..+ |.+.-|.+ .+|..- +.......+.. .-
T Consensus 579 ~~~iPRSIl~~~~e~d~~yLlvalgd----------G~l~~fv~d~~tg~lsd~Kk~~lGt~P~~-------------Lr 635 (1096)
T KOG1897|consen 579 GEIIPRSILLTTFEGDIHYLLVALGD----------GALLYFVLDINTGQLSDRKKVTLGTQPIS-------------LR 635 (1096)
T ss_pred CCccchheeeEEeeccceEEEEEcCC----------ceEEEEEEEcccceEccccccccCCCCcE-------------EE
Confidence 1 1 25566666778999999999 87765544 444321 11111111111 34
Q ss_pred EecCCCCCEEEEecCCeEEEEEcCCceecccccccccCeeeE-EECCC--CCeEEEEeecCCCCCCCeEEEEEecCCccc
Q 005140 325 RWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDF-SWSPT--DPIISLFVPELGGGNQPARVSLVQIPSKEE 401 (712)
Q Consensus 325 ~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~-~~sp~--~~~la~~~~~~~~~~~~~~i~~~~~~~~~~ 401 (712)
.|+....+.+.+++|.-..+|..+..-.... +....+..+ .|+.+ ...|++. .++...+..++--..-.
T Consensus 636 ~f~sk~~t~vfa~sdrP~viY~~n~kLv~sp--ls~kev~~~c~f~s~a~~d~l~~~------~~~~l~i~tid~iqkl~ 707 (1096)
T KOG1897|consen 636 TFSSKSRTAVFALSDRPTVIYSSNGKLVYSP--LSLKEVNHMCPFNSDAYPDSLASA------NGGALTIGTIDEIQKLH 707 (1096)
T ss_pred EEeeCCceEEEEeCCCCEEEEecCCcEEEec--cchHHhhhhcccccccCCceEEEe------cCCceEEEEecchhhcc
Confidence 5655245567777788777886552222111 111112222 12222 2344431 33444444443222212
Q ss_pred eeeeeeeeecceeEEECcCCCEEEEEEcccccccccc--cccEEEEEEecCCcceeEEEec--CC---CCceEEEEEeeC
Q 005140 402 LRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKST--YTGFELFRIKERDIPIEVLELD--NK---NDKIIAFAWEPK 474 (712)
Q Consensus 402 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~--~~~~~l~~l~~~~~~~~~~~l~--~h---~~~v~~~~~sp~ 474 (712)
+++.. ......++.+++....+.+.+.+...+...+ ...+...++-+.. ....+... .. ...+.+..|..|
T Consensus 708 irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~n-Tf~vl~~hef~~~E~~~Si~s~~~~~d 785 (1096)
T KOG1897|consen 708 IRTVP-LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQN-TFEVLSSHEFERNETALSIISCKFTDD 785 (1096)
T ss_pred eeeec-CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCC-ceeEEeeccccccceeeeeeeeeecCC
Confidence 22222 2233345567775666666665543222110 1112222222211 11111110 00 123445557776
Q ss_pred -CCEEEEEEc----CCC---CCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 475 -GHRFAVIHG----DSP---RPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 475 -g~~l~~~~~----d~~---~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
+.++++|.+ |.. ...|.+|.+...+ +++.+.... .+.+.++.. -+|+++|.- +..|++|++.
T Consensus 786 ~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~---~L~~v~e~~v~Gav~aL~~-fngkllA~I-----n~~vrLye~t 856 (1096)
T KOG1897|consen 786 PNTYYVVGTGLVYPDENEPVNGRIIVFEFEELN---SLELVAETVVKGAVYALVE-FNGKLLAGI-----NQSVRLYEWT 856 (1096)
T ss_pred CceEEEEEEEeeccCCCCcccceEEEEEEecCC---ceeeeeeeeeccceeehhh-hCCeEEEec-----CcEEEEEEcc
Confidence 778888765 111 1268888886521 233333332 222333221 267777655 5699999999
Q ss_pred cceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 546 ELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 546 ~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
+.+.+.. .+..++..+...-.|..|+.|.. -+++.+-.+.
T Consensus 857 ~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDl-----m~Sitll~y~ 898 (1096)
T KOG1897|consen 857 TERELRIECNISNPIIALDLQVKGDEIAVGDL-----MRSITLLQYK 898 (1096)
T ss_pred ccceehhhhcccCCeEEEEEEecCcEEEEeec-----cceEEEEEEe
Confidence 8866654 56678888999999999999987 5566655544
No 440
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.11 Score=54.59 Aligned_cols=189 Identities=12% Similarity=0.050 Sum_probs=123.3
Q ss_pred ccceEEEcCCCcEEEEEe--cCceEEeecccCcceeeeecCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEE
Q 005140 215 TESFVQWSPLGTYLATVH--RQGAAVWGGANTFNRLMRYAHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFD 291 (712)
Q Consensus 215 ~v~~v~~Spdg~~lat~~--~~~i~iw~~~~~~~~~~~~~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd 291 (712)
.-..++.++.|..+.... .+.+.+.|.. ........... ....++++|+++++..+.... ..+++.+.|
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~-~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~-------~~~~vsvid 146 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTA-TNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGN-------GNNTVSVID 146 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCc-ccceeeEeeeccCCceEEECCCCCEEEEEeccc-------CCceEEEEe
Confidence 335788999998555554 3448898977 55555554433 588999999999888776631 117899999
Q ss_pred ccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCceecc-cc---cccccCeee
Q 005140 292 VRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLID-KK---SLKVENVMD 365 (712)
Q Consensus 292 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~-~~---~~~~~~v~~ 365 (712)
..+++.+........+. .++++| +|+.+.... ++.|.+.+..+..... .. ......-..
T Consensus 147 ~~t~~~~~~~~vG~~P~--------------~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~ 211 (381)
T COG3391 147 AATNKVTATIPVGNTPT--------------GVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAG 211 (381)
T ss_pred CCCCeEEEEEecCCCcc--------------eEEECC-CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCce
Confidence 88888887755443332 589999 999776666 8999999977665552 10 112233577
Q ss_pred EEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeee-cceeEEECcCCCEEEEEEcc
Q 005140 366 FSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV-SDCKMYWQSSGDYLAVKVDR 430 (712)
Q Consensus 366 ~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~g~~l~~~~~~ 430 (712)
+.++|+|..+.+... ......+..++............... ....+..+|+|.++.+....
T Consensus 212 i~v~~~g~~~yV~~~----~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~ 273 (381)
T COG3391 212 IAVDPDGNRVYVAND----GSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ 273 (381)
T ss_pred EEECCCCCEEEEEec----cCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC
Confidence 899999997765311 22235777777766654443211111 23345678999988876544
No 441
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.24 E-value=0.00024 Score=65.32 Aligned_cols=63 Identities=22% Similarity=0.413 Sum_probs=54.4
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
..+||++||. ..-+.+|..+|..||++.+ +.| ..||+||+|.+..+|..|+..+||..|.+..
T Consensus 2 ~rv~vg~~~~------~~~~~d~E~~f~~yg~~~d--~~m--------k~gf~fv~fed~rda~Dav~~l~~~~l~~e~ 64 (216)
T KOG0106|consen 2 PRVYIGRLPY------RARERDVERFFKGYGKIPD--ADM--------KNGFGFVEFEDPRDADDAVHDLDGKELCGER 64 (216)
T ss_pred CceeecccCC------ccchhHHHHHHhhcccccc--cee--------ecccceeccCchhhhhcccchhcCceeccee
Confidence 4689999997 4458999999999999877 544 3479999999999999999999999998863
No 442
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.22 E-value=0.0043 Score=67.55 Aligned_cols=192 Identities=11% Similarity=0.102 Sum_probs=122.6
Q ss_pred CCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeee
Q 005140 331 DKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFS 409 (712)
Q Consensus 331 g~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 409 (712)
+..++.++ ...+..+|+.+.+.........++|.-+. .+++.+.+ ++..+.|.+-+..+.+.+.....|.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~-------G~t~G~V~LrD~~s~~~iht~~aHs 217 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFC-------GDTRGTVFLRDPNSFETIHTFDAHS 217 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEe-------ecccceEEeecCCcCceeeeeeccc
Confidence 34555566 77788889988877665555555555444 34677776 7778888899998888887776666
Q ss_pred ecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeC-CCEEEEEEcCCCCC
Q 005140 410 VSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK-GHRFAVIHGDSPRP 488 (712)
Q Consensus 410 ~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~-g~~l~~~~~d~~~~ 488 (712)
.... .|.-+|+.|+++.-...........-+.+|+++.-.. +..+.+ .....-+.|.|. ...+|+++..|
T Consensus 218 ~siS--DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra-l~PI~~---~~~P~flrf~Psl~t~~~V~S~sG--- 288 (1118)
T KOG1275|consen 218 GSIS--DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA-LSPIQF---PYGPQFLRFHPSLTTRLAVTSQSG--- 288 (1118)
T ss_pred ccee--eeeccCCeEEEeecccccccccccchhhhhhhhhhhc-cCCccc---ccCchhhhhcccccceEEEEeccc---
Confidence 5554 3577899998876654432322333467888875311 111222 112234567774 46788888878
Q ss_pred eEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEEC
Q 005140 489 DISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNV 544 (712)
Q Consensus 489 ~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~ 544 (712)
...+-|..+-... ........+ +..+..+.+|++|..++++.. +|.|.+|.-
T Consensus 289 q~q~vd~~~lsNP-~~~~~~v~p~~s~i~~fDiSsn~~alafgd~---~g~v~~wa~ 341 (1118)
T KOG1275|consen 289 QFQFVDTATLSNP-PAGVKMVNPNGSGISAFDISSNGDALAFGDH---EGHVNLWAD 341 (1118)
T ss_pred ceeeccccccCCC-ccceeEEccCCCcceeEEecCCCceEEEecc---cCcEeeecC
Confidence 7888773221111 111222223 334899999999999999998 999999973
No 443
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.18 E-value=0.18 Score=50.48 Aligned_cols=151 Identities=11% Similarity=0.038 Sum_probs=82.6
Q ss_pred eEEEcCCCcEEEEEecCc--eEEeecccCcceeeeecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC
Q 005140 218 FVQWSPLGTYLATVHRQG--AAVWGGANTFNRLMRYAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT 294 (712)
Q Consensus 218 ~v~~Spdg~~lat~~~~~--i~iw~~~~~~~~~~~~~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~ 294 (712)
+..|.|++..|..+.-.+ |.-|+.. ++ ....+.++. +.++..-..+..|+++... +.+++..+
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~-~g-~~~~~~~p~~~~~~~~~d~~g~Lv~~~~g------------~~~~~~~~ 94 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPE-TG-KKRVFPSPGGFSSGALIDAGGRLIACEHG------------VRLLDPDT 94 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCC-cC-ceEEEECCCCcccceeecCCCeEEEEccc------------cEEEeccC
Confidence 356888888777776554 6677776 33 233333333 5555554455566666554 56777766
Q ss_pred CceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecC----------CeEEEEEcC-CceecccccccccCe
Q 005140 295 GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGK----------NMISVYETE-SFTLIDKKSLKVENV 363 (712)
Q Consensus 295 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d----------~~i~iwd~~-~~~~~~~~~~~~~~v 363 (712)
+..+..+....... ....++.....| +|.+-++... ..-.+|.+. .+..+.....+...-
T Consensus 95 ~~~~t~~~~~~~~~--------~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~ 165 (307)
T COG3386 95 GGKITLLAEPEDGL--------PLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIP 165 (307)
T ss_pred CceeEEeccccCCC--------CcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEec
Confidence 65533332221111 001133566677 7776554333 112455555 444443332334456
Q ss_pred eeEEECCCCCeEEEEeecCCCCCCCeEEEEEecC
Q 005140 364 MDFSWSPTDPIISLFVPELGGGNQPARVSLVQIP 397 (712)
Q Consensus 364 ~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~ 397 (712)
+.++||||++.|.+. .....+|+.++..
T Consensus 166 NGla~SpDg~tly~a------DT~~~~i~r~~~d 193 (307)
T COG3386 166 NGLAFSPDGKTLYVA------DTPANRIHRYDLD 193 (307)
T ss_pred CceEECCCCCEEEEE------eCCCCeEEEEecC
Confidence 889999999877762 3344677777765
No 444
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.14 E-value=0.23 Score=46.65 Aligned_cols=68 Identities=9% Similarity=-0.015 Sum_probs=51.6
Q ss_pred CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeE
Q 005140 264 GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMI 342 (712)
Q Consensus 264 dg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i 342 (712)
-|.+++.|... +.+.+.+..+|.....|..-..... .....+ ++..+..++ |++.
T Consensus 62 vgdfVV~GCy~----------g~lYfl~~~tGs~~w~f~~~~~vk~-------------~a~~d~-~~glIycgshd~~~ 117 (354)
T KOG4649|consen 62 VGDFVVLGCYS----------GGLYFLCVKTGSQIWNFVILETVKV-------------RAQCDF-DGGLIYCGSHDGNF 117 (354)
T ss_pred ECCEEEEEEcc----------CcEEEEEecchhheeeeeehhhhcc-------------ceEEcC-CCceEEEecCCCcE
Confidence 57889999998 8899999999988777765432211 235566 888999888 9999
Q ss_pred EEEEcCCceeccc
Q 005140 343 SVYETESFTLIDK 355 (712)
Q Consensus 343 ~iwd~~~~~~~~~ 355 (712)
...|..+...+.+
T Consensus 118 yalD~~~~~cVyk 130 (354)
T KOG4649|consen 118 YALDPKTYGCVYK 130 (354)
T ss_pred EEecccccceEEe
Confidence 9999887666544
No 445
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.12 E-value=0.29 Score=50.17 Aligned_cols=222 Identities=14% Similarity=0.183 Sum_probs=117.8
Q ss_pred cEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCC----CCEEEEec----------C-CeEEEEEcCC
Q 005140 285 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK----DKYFAKLG----------K-NMISVYETES 349 (712)
Q Consensus 285 ~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d----g~~la~~~----------d-~~i~iwd~~~ 349 (712)
..|++.|..+.+.+.++.-..... +.++. .+.+.. + ..+|+.|. . |.|.+|++..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~-------~~s~~--~~~l~~-~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~ 71 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEH-------VTSLC--SVKLKG-DSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISE 71 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEE-------EEEEE--EEEETT-S---SSEEEEEEEEE--TTSSS-S-EEEEEEEECS
T ss_pred cEEEEEeCCCCeEEEEEECCCCce-------EEEEE--EEEEcC-ccccccCEEEEEecccccccccccCcEEEEEEEEc
Confidence 468888887887777666554433 11111 233333 2 35777654 1 8899999987
Q ss_pred c-----ee--cccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCC
Q 005140 350 F-----TL--IDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGD 422 (712)
Q Consensus 350 ~-----~~--~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 422 (712)
. ++ +.... ..+.|.+++-- .+.+++. .+..+.++.++... .+..................+.
T Consensus 72 ~~~~~~~l~~i~~~~-~~g~V~ai~~~-~~~lv~~-------~g~~l~v~~l~~~~--~l~~~~~~~~~~~i~sl~~~~~ 140 (321)
T PF03178_consen 72 SPENNFKLKLIHSTE-VKGPVTAICSF-NGRLVVA-------VGNKLYVYDLDNSK--TLLKKAFYDSPFYITSLSVFKN 140 (321)
T ss_dssp S-----EEEEEEEEE-ESS-EEEEEEE-TTEEEEE-------ETTEEEEEEEETTS--SEEEEEEE-BSSSEEEEEEETT
T ss_pred ccccceEEEEEEEEe-ecCcceEhhhh-CCEEEEe-------ecCEEEEEEccCcc--cchhhheecceEEEEEEecccc
Confidence 3 22 22221 22447776654 4444443 34555555555444 3333333333222233344467
Q ss_pred EEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeeccc---
Q 005140 423 YLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQ--- 499 (712)
Q Consensus 423 ~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~--- 499 (712)
+++++..... +.++..+........+.-......++++.+-++++.++++..++ ++.++......
T Consensus 141 ~I~vgD~~~s---------v~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~g---nl~~l~~~~~~~~~ 208 (321)
T PF03178_consen 141 YILVGDAMKS---------VSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDG---NLFVLRYNPEIPNS 208 (321)
T ss_dssp EEEEEESSSS---------EEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTS---EEEEEEE-SS-SST
T ss_pred EEEEEEcccC---------EEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCC---eEEEEEECCCCccc
Confidence 8888766544 67777776444333333333355688888887778888888888 89998886311
Q ss_pred -ccC-ceeEEEEeC-CCceeEE---EEcc--CCC------eEEEEeccCCCceEEEE
Q 005140 500 -HAG-RVSKLTTLK-GKQANAL---FWSP--SGR------FIVLAGLKGFNGQLEFY 542 (712)
Q Consensus 500 -~~~-~~~~~~~~~-~~~v~~l---~~sp--dg~------~l~~~~~~~~dg~v~iw 542 (712)
... +......+. +..++++ ++.| .+. .++.++. +|.|...
T Consensus 209 ~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~---~G~Ig~l 262 (321)
T PF03178_consen 209 RDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTV---DGSIGVL 262 (321)
T ss_dssp TTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEET---TS-EEEE
T ss_pred ccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEec---CCEEEEE
Confidence 111 344455555 4467776 5555 222 3666666 8888743
No 446
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.09 E-value=0.53 Score=49.81 Aligned_cols=109 Identities=11% Similarity=0.014 Sum_probs=62.2
Q ss_pred CcEEEEEecCc-eEEeecccCcceeeeecCCC-ee-EEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeec
Q 005140 225 GTYLATVHRQG-AAVWGGANTFNRLMRYAHPQ-VK-LIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDF 301 (712)
Q Consensus 225 g~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~-v~-~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~ 301 (712)
+..++.++.++ +..+|.. +++.+=+....+ +. +... .+..++.+..+ +.|..+|..+|+.+..+
T Consensus 120 ~~~v~v~~~~g~l~ald~~-tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~----------g~l~ald~~tG~~~W~~ 186 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAE-DGEVAWQTKVAGEALSRPVV--SDGLVLVHTSN----------GMLQALNESDGAVKWTV 186 (394)
T ss_pred CCEEEEEcCCCEEEEEECC-CCCCcccccCCCceecCCEE--ECCEEEEECCC----------CEEEEEEccCCCEeeee
Confidence 44555566666 7788887 666555443322 21 1222 24456667767 78999999999988777
Q ss_pred cCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceecccc
Q 005140 302 KGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKK 356 (712)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~ 356 (712)
........ ..+..-| ... ++..++...++.+..++..+|+.+...
T Consensus 187 ~~~~~~~~------~~~~~sP--~v~--~~~v~~~~~~g~v~a~d~~~G~~~W~~ 231 (394)
T PRK11138 187 NLDVPSLT------LRGESAP--ATA--FGGAIVGGDNGRVSAVLMEQGQLIWQQ 231 (394)
T ss_pred cCCCCccc------ccCCCCC--EEE--CCEEEEEcCCCEEEEEEccCChhhhee
Confidence 64321110 0000111 111 344444444888888888888766543
No 447
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.55 Score=49.28 Aligned_cols=240 Identities=13% Similarity=0.099 Sum_probs=139.9
Q ss_pred eEEecCCCCCEEEEec--CCeEEEEEcCCceecccc-cccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc
Q 005140 323 VFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKK-SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 399 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 399 (712)
.+...+ ++..+.... .+.+...+.. ....... ......-..++.++.+..+... ....-.|..++....
T Consensus 35 ~v~~~~-~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~------~~~~~~v~vid~~~~ 106 (381)
T COG3391 35 GVAVNP-DGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYVT------TGDSNTVSVIDTATN 106 (381)
T ss_pred eeEEcC-ccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEEe------cCCCCeEEEEcCccc
Confidence 467777 775444333 3344444443 2221111 1111224577888888866552 212345556665555
Q ss_pred cceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEE
Q 005140 400 EELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFA 479 (712)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~ 479 (712)
..+....... ....+.++++++++.+..... ..-.++.++......... .+....+ ..++++|+|+.++
T Consensus 107 ~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~--------~~~~vsvid~~t~~~~~~-~~vG~~P-~~~a~~p~g~~vy 175 (381)
T COG3391 107 TVLGSIPVGL-GPVGLAVDPDGKYVYVANAGN--------GNNTVSVIDAATNKVTAT-IPVGNTP-TGVAVDPDGNKVY 175 (381)
T ss_pred ceeeEeeecc-CCceEEECCCCCEEEEEeccc--------CCceEEEEeCCCCeEEEE-EecCCCc-ceEEECCCCCeEE
Confidence 5444444333 455678999999988876642 012344444432222111 2111233 8899999999888
Q ss_pred EEEc-CCCCCeEEEEEeecccccCceeEEE-E----eC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee
Q 005140 480 VIHG-DSPRPDISFYSMRTAQHAGRVSKLT-T----LK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT 552 (712)
Q Consensus 480 ~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~-~----~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~ 552 (712)
+... ++ .|.+++..... ... . .. ...-..+.++|+|.++.+....+.++.+...|..++.....
T Consensus 176 v~~~~~~---~v~vi~~~~~~------v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 176 VTNSDDN---TVSVIDTSGNS------VVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred EEecCCC---eEEEEeCCCcc------eeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 8774 44 89999965432 121 1 11 12346799999999888876533246899999998777765
Q ss_pred -ccc-c-ceeeEEECCCCCEEEEEEccceeccccEEEEEecCcee
Q 005140 553 -AEH-F-MATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLL 594 (712)
Q Consensus 553 -~~~-~-~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~ 594 (712)
... . ....+..+|+|+++...... .+.+.+-+.....+
T Consensus 247 ~~~~~~~~~~~v~~~p~g~~~yv~~~~----~~~V~vid~~~~~v 287 (381)
T COG3391 247 DLPVGSGAPRGVAVDPAGKAAYVANSQ----GGTVSVIDGATDRV 287 (381)
T ss_pred ccccccCCCCceeECCCCCEEEEEecC----CCeEEEEeCCCCce
Confidence 111 1 45678999999998888652 46777777654333
No 448
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.05 E-value=0.41 Score=47.76 Aligned_cols=139 Identities=13% Similarity=0.102 Sum_probs=76.4
Q ss_pred CCCcEEEEEecCceEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeecc
Q 005140 223 PLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFK 302 (712)
Q Consensus 223 pdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~ 302 (712)
..|+.|+.|..+|+.+++...........+...|..+...|+-+.|++-+. +.+.++++..-.......
T Consensus 5 ~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLsd-----------~~l~~~~L~~l~~~~~~~ 73 (275)
T PF00780_consen 5 SWGDRLLVGTEDGLYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLSD-----------GQLYVYDLDSLEPVSTSA 73 (275)
T ss_pred cCCCEEEEEECCCEEEEEecCCccceeEeecceEEEEEEecccCEEEEEcC-----------CccEEEEchhhccccccc
Confidence 357889999999998888842344444444445999999998887777653 579999986544332110
Q ss_pred ---CCCcccccCCCCCcCCCCcCeEE---ecCCCCCEEEEecCCeEEEEEcCCc--ee-cccccccc-cCeeeEEECCCC
Q 005140 303 ---GSADEFAVGGTGGVAGVSWPVFR---WGGGKDKYFAKLGKNMISVYETESF--TL-IDKKSLKV-ENVMDFSWSPTD 372 (712)
Q Consensus 303 ---~~~~~~~~~~~~~~~~~~~~~~~---~s~~dg~~la~~~d~~i~iwd~~~~--~~-~~~~~~~~-~~v~~~~~sp~~ 372 (712)
..........-....++. .++ -.. .+.+|+.+....|.+|..... .. ...+.+.. ..+..++|. +
T Consensus 74 ~~~~~~~~~~~~~~~~~~~v~--~f~~~~~~~-~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~ 148 (275)
T PF00780_consen 74 PLAFPKSRSLPTKLPETKGVS--FFAVNGGHE-GSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--G 148 (275)
T ss_pred cccccccccccccccccCCee--EEeeccccc-cceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--C
Confidence 000000000000011111 122 112 445666666889999887642 11 11111222 457888888 4
Q ss_pred CeEEE
Q 005140 373 PIISL 377 (712)
Q Consensus 373 ~~la~ 377 (712)
+.|++
T Consensus 149 ~~i~v 153 (275)
T PF00780_consen 149 NKICV 153 (275)
T ss_pred CEEEE
Confidence 55555
No 449
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.93 E-value=0.0028 Score=44.52 Aligned_cols=52 Identities=21% Similarity=0.476 Sum_probs=40.0
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHH
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAK 126 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~ 126 (712)
+.|.|.|.|. +. ...+.+.|.+||+|.. +.++. ..-+.+|.|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~------~~-~~~vl~~F~~fGeI~~--~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPP------DL-AEEVLEHFASFGEIVD--IYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECc------hH-HHHHHHHHHhcCCEEE--EEcCC------CCcEEEEEECCHHHHHhhC
Confidence 4678888885 33 3445568999999999 88872 2238999999999999984
No 450
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.91 E-value=0.065 Score=51.42 Aligned_cols=128 Identities=14% Similarity=0.207 Sum_probs=81.4
Q ss_pred cceeeeecCCC---eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCc
Q 005140 245 FNRLMRYAHPQ---VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSW 321 (712)
Q Consensus 245 ~~~~~~~~~~~---v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (712)
...+.+++|.. ...+.|..+|..+-+.+.. +...|+.+|+.+|+.++....+..... -
T Consensus 33 ~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~y--------G~S~l~~~d~~tg~~~~~~~l~~~~Fg-------E---- 93 (264)
T PF05096_consen 33 YEVVETYPHDPTAFTQGLEFLDDGTLYESTGLY--------GQSSLRKVDLETGKVLQSVPLPPRYFG-------E---- 93 (264)
T ss_dssp EEEEEEEE--TT-EEEEEEEEETTEEEEEECST--------TEEEEEEEETTTSSEEEEEE-TTT--E-------E----
T ss_pred eEEEEECCCCCcccCccEEecCCCEEEEeCCCC--------CcEEEEEEECCCCcEEEEEECCccccc-------e----
Confidence 34667777765 7889998889888888876 225899999999998876665544331 1
Q ss_pred CeEEecCCCCCEEEEecCCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccc
Q 005140 322 PVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE 401 (712)
Q Consensus 322 ~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~ 401 (712)
-+.... |.-+..+.-++...+||..+.+.+.......++ ..++ .++..|.. .|++.+++.++..+.+.
T Consensus 94 -Git~~~-d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EG-WGLt--~dg~~Li~-------SDGS~~L~~~dP~~f~~ 161 (264)
T PF05096_consen 94 -GITILG-DKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEG-WGLT--SDGKRLIM-------SDGSSRLYFLDPETFKE 161 (264)
T ss_dssp -EEEEET-TEEEEEESSSSEEEEEETTTTEEEEEEE-SSS---EEE--ECSSCEEE-------E-SSSEEEEE-TTT-SE
T ss_pred -eEEEEC-CEEEEEEecCCeEEEEccccceEEEEEecCCcc-eEEE--cCCCEEEE-------ECCccceEEECCcccce
Confidence 133333 333444445999999999998887665444332 3344 56777777 78888999888766554
Q ss_pred ee
Q 005140 402 LR 403 (712)
Q Consensus 402 ~~ 403 (712)
.+
T Consensus 162 ~~ 163 (264)
T PF05096_consen 162 VR 163 (264)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 451
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.85 E-value=0.0012 Score=60.92 Aligned_cols=70 Identities=16% Similarity=0.303 Sum_probs=57.5
Q ss_pred CCEEEECCCC-CCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCC--------CCcccE----EEEEeCCHHHHHHH
Q 005140 59 GNIIVVDNLP-VVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPET--------QKSLGY----CFIEYNTPQEAELA 125 (712)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~--------~~~~g~----~fv~~~~~~~a~~a 125 (712)
.-+||+++|| ...+. -|++||+.||.|-. |++.....+ |..+++ |.|+|.+...|+..
T Consensus 74 ~GVvylS~IPp~m~~~-------rlReil~~yGeVGR--vylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~i 144 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPV-------RLREILSQYGEVGR--VYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRI 144 (278)
T ss_pred ceEEEeccCCCccCHH-------HHHHHHHhccccce--EEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHH
Confidence 3589999999 45543 49999999999999 999777655 444443 56999999999999
Q ss_pred HHHhCCCccCCc
Q 005140 126 KEKTNGYKLDRA 137 (712)
Q Consensus 126 ~~~~~~~~~~~~ 137 (712)
...|||..|+|+
T Consensus 145 Ae~Lnn~~Iggk 156 (278)
T KOG3152|consen 145 AELLNNTPIGGK 156 (278)
T ss_pred HHHhCCCccCCC
Confidence 999999999886
No 452
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.81 E-value=0.0009 Score=61.57 Aligned_cols=68 Identities=21% Similarity=0.292 Sum_probs=57.3
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.+.++|.+++- +..+.+|.+.|.++|++.. ..+ ..+++||+|+..++|.+|+..++|..+.++
T Consensus 98 s~~r~~~~~~~~------r~~~qdl~d~~~~~g~~~~--~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~ 161 (216)
T KOG0106|consen 98 THFRLIVRNLSL------RVSWQDLKDHFRPAGEVTY--VDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGR 161 (216)
T ss_pred ccceeeeccchh------hhhHHHHhhhhcccCCCch--hhh--------hccccceeehhhhhhhhcchhccchhhcCc
Confidence 467899999997 6668999999999999844 212 568999999999999999999999999887
Q ss_pred eEEEE
Q 005140 138 HIFAV 142 (712)
Q Consensus 138 ~~l~v 142 (712)
.+.+
T Consensus 162 -~l~~ 165 (216)
T KOG0106|consen 162 -RISV 165 (216)
T ss_pred -eeee
Confidence 4444
No 453
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.79 E-value=0.0081 Score=58.06 Aligned_cols=87 Identities=18% Similarity=0.348 Sum_probs=69.4
Q ss_pred CCCCEEEECCCCCCCchhhhh-------hHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 005140 57 GFGNIIVVDNLPVVPKEKFEK-------LEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKT 129 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~-------~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~ 129 (712)
.+.++|++-|+= +++.+++ ++++|++-.++||.|.+ | +..|+ .+.|.+-|.|.+.++|..||+.|
T Consensus 263 r~~~tVi~kn~F--tp~~~~~~~~l~~dlkedl~eec~K~G~v~~--v-vv~d~---hPdGvvtV~f~n~eeA~~ciq~m 334 (382)
T KOG1548|consen 263 RADRTVILKNMF--TPEDFEKNPDLLNDLKEDLTEECEKFGQVRK--V-VVYDR---HPDGVVTVSFRNNEEADQCIQTM 334 (382)
T ss_pred cCCcEEEeeecC--CHHHhccCHHHHHHHHHHHHHHHHHhCCcce--E-EEecc---CCCceeEEEeCChHHHHHHHHHh
Confidence 467899999984 2333332 56667777999999998 5 55665 68899999999999999999999
Q ss_pred CCCccCCceEEEEEeeccccccc
Q 005140 130 NGYKLDRAHIFAVNMFDDFDKFM 152 (712)
Q Consensus 130 ~~~~~~~~~~l~v~~~~~~~~~~ 152 (712)
+|..++|+ .+....+...-++.
T Consensus 335 ~GR~fdgR-ql~A~i~DG~t~~~ 356 (382)
T KOG1548|consen 335 DGRWFDGR-QLTASIWDGKTKFQ 356 (382)
T ss_pred cCeeecce-EEEEEEeCCcceee
Confidence 99999996 88888887655554
No 454
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.79 E-value=0.00082 Score=70.12 Aligned_cols=182 Identities=14% Similarity=0.183 Sum_probs=107.2
Q ss_pred eEEEEECCeeEEEecCCCCCCC-cccccCCCcccceEEEcC-CCcEEEEEecC----c-eEEeecccCcc--ee--eee-
Q 005140 184 QFVIRSGTDTEVLWNDARHLKP-EPVYKRSYWTESFVQWSP-LGTYLATVHRQ----G-AAVWGGANTFN--RL--MRY- 251 (712)
Q Consensus 184 ~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~~~~v~~v~~Sp-dg~~lat~~~~----~-i~iw~~~~~~~--~~--~~~- 251 (712)
..+++..+|.+.+-+...+... .-...+|...+++++|++ |...||.|... . +.|||.. +.- +. -.|
T Consensus 72 IlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~-s~ltvPke~~~fs 150 (783)
T KOG1008|consen 72 ILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN-SLLTVPKESPLFS 150 (783)
T ss_pred hhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc-cccCCCccccccc
Confidence 4456666676666655222222 234468888999999998 56677777532 2 7799988 441 11 111
Q ss_pred --cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC-ceeeeccCCCcccccCCCCCcCCCCcCeEEecC
Q 005140 252 --AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG-KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGG 328 (712)
Q Consensus 252 --~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 328 (712)
...+..+++|-.+.+.+++|... ..+.++|++.. .....+... .+.|++ .=-|++
T Consensus 151 ~~~l~gqns~cwlrd~klvlaGm~s----------r~~~ifdlRqs~~~~~svnTk----------~vqG~t--Vdp~~~ 208 (783)
T KOG1008|consen 151 SSTLDGQNSVCWLRDTKLVLAGMTS----------RSVHIFDLRQSLDSVSSVNTK----------YVQGIT--VDPFSP 208 (783)
T ss_pred cccccCccccccccCcchhhccccc----------chhhhhhhhhhhhhhhhhhhh----------hcccce--ecCCCC
Confidence 12346788998888989888887 78999998622 112222110 112211 113444
Q ss_pred CCCCEEEEecCCeEEEEEcC-Cce-eccc----ccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEec
Q 005140 329 GKDKYFAKLGKNMISVYETE-SFT-LIDK----KSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQI 396 (712)
Q Consensus 329 ~dg~~la~~~d~~i~iwd~~-~~~-~~~~----~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~ 396 (712)
.|+++..++.|.+||.. ..+ ++.. .......+..++|+|...-+.. ........|.+|++
T Consensus 209 ---nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla-----~l~RdS~tIrlydi 274 (783)
T KOG1008|consen 209 ---NYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLA-----VLSRDSITIRLYDI 274 (783)
T ss_pred ---CceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhh-----hhccCcceEEEecc
Confidence 79998889999999943 221 1111 1111224889999997543332 11445566777765
No 455
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=0.016 Score=64.69 Aligned_cols=102 Identities=9% Similarity=0.135 Sum_probs=69.2
Q ss_pred CCcEEEEEecCc-eEEeecccCcceeeeec--CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeee
Q 005140 224 LGTYLATVHRQG-AAVWGGANTFNRLMRYA--HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRD 300 (712)
Q Consensus 224 dg~~lat~~~~~-i~iw~~~~~~~~~~~~~--~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~ 300 (712)
.+..+|.|+..| +...|..++.....+-. ..+|++++|+.+|+.++.|-.+ |.|.+||+..++.++.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~----------G~V~v~D~~~~k~l~~ 167 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGD----------GHVTVWDMHRAKILKV 167 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCC----------CcEEEEEccCCcceee
Confidence 466788888777 77777764433333332 2349999999999999999999 9999999999999888
Q ss_pred ccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcC
Q 005140 301 FKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETE 348 (712)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~ 348 (712)
+.-+..+. +++- .+.|.. ++..+.++. .|. +|.+.
T Consensus 168 i~e~~ap~--------t~vi--~v~~t~-~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 168 ITEHGAPV--------TGVI--FVGRTS-QNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred eeecCCcc--------ceEE--EEEEeC-CCcEEEEccCCCc--eEEEE
Confidence 77665443 1211 345555 555555554 443 66543
No 456
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.76 E-value=0.0016 Score=63.37 Aligned_cols=87 Identities=23% Similarity=0.223 Sum_probs=74.1
Q ss_pred cCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeec------eEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 005140 56 SGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKED------GLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKT 129 (712)
Q Consensus 56 ~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~------~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~ 129 (712)
.....+|||-+||- .+++++|...|.++|.|..+ -|++=+|++|++.||=|.|+|+++..|+.|+.-+
T Consensus 63 ~s~~~ti~v~g~~d------~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~ 136 (351)
T KOG1995|consen 63 KSDNETIFVWGCPD------SVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWF 136 (351)
T ss_pred ccccccceeeccCc------cchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhh
Confidence 34556999999997 55589999999999998653 3677889999999999999999999999999999
Q ss_pred CCCccCCceEEEEEeecccc
Q 005140 130 NGYKLDRAHIFAVNMFDDFD 149 (712)
Q Consensus 130 ~~~~~~~~~~l~v~~~~~~~ 149 (712)
++..+.+ .+++|..+....
T Consensus 137 agkdf~g-n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 137 AGKDFCG-NTIKVSLAERRT 155 (351)
T ss_pred ccccccC-CCchhhhhhhcc
Confidence 9999988 488888766544
No 457
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.74 E-value=0.44 Score=47.82 Aligned_cols=228 Identities=13% Similarity=0.041 Sum_probs=115.7
Q ss_pred EEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCeeeE-EECCCCCeEEEEeecCCCCCCCeEEEEEecCCc-
Q 005140 324 FRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDF-SWSPTDPIISLFVPELGGGNQPARVSLVQIPSK- 399 (712)
Q Consensus 324 ~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~-~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~- 399 (712)
..|.+ +...|..+. .+.|.-|+..++.... . .....+.++ .....+.++++ ..+.. ++..+....
T Consensus 30 P~w~~-~~~~L~w~DI~~~~i~r~~~~~g~~~~-~-~~p~~~~~~~~~d~~g~Lv~~-------~~g~~-~~~~~~~~~~ 98 (307)
T COG3386 30 PVWDP-DRGALLWVDILGGRIHRLDPETGKKRV-F-PSPGGFSSGALIDAGGRLIAC-------EHGVR-LLDPDTGGKI 98 (307)
T ss_pred ccCcC-CCCEEEEEeCCCCeEEEecCCcCceEE-E-ECCCCcccceeecCCCeEEEE-------ccccE-EEeccCCcee
Confidence 46778 888666666 8888888887553221 0 111223333 33444444443 22211 111111111
Q ss_pred ccee----eeeeeeecceeEEECcCCCEEEEEEc---ccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEe
Q 005140 400 EELR----QKNLFSVSDCKMYWQSSGDYLAVKVD---RYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWE 472 (712)
Q Consensus 400 ~~~~----~~~~~~~~~~~~~~s~~g~~l~~~~~---~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~s 472 (712)
..+. .......++ ....|+|.+.+.... .... ... .. -.+|+++..+... ..+..+-..-+.++||
T Consensus 99 t~~~~~~~~~~~~r~ND--~~v~pdG~~wfgt~~~~~~~~~-~~~-~~-G~lyr~~p~g~~~--~l~~~~~~~~NGla~S 171 (307)
T COG3386 99 TLLAEPEDGLPLNRPND--GVVDPDGRIWFGDMGYFDLGKS-EER-PT-GSLYRVDPDGGVV--RLLDDDLTIPNGLAFS 171 (307)
T ss_pred EEeccccCCCCcCCCCc--eeEcCCCCEEEeCCCccccCcc-ccC-Cc-ceEEEEcCCCCEE--EeecCcEEecCceEEC
Confidence 0000 011111122 234788876555433 1110 011 11 1688887432221 1122233455679999
Q ss_pred eCCCEEEEEEcCCCCCeEEEEEeec--ccccCc-eeEEEEeCCCceeEEEEccCCCeEEEEeccCCCc-eEEEEECCcce
Q 005140 473 PKGHRFAVIHGDSPRPDISFYSMRT--AQHAGR-VSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNG-QLEFYNVDELE 548 (712)
Q Consensus 473 p~g~~l~~~~~d~~~~~v~i~d~~~--~~~~~~-~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg-~v~iwd~~~~~ 548 (712)
||++.|+++-... ..|.-|++.. +....+ .........+....++...+|.+.+++.. +| .|.+|+.+ ++
T Consensus 172 pDg~tly~aDT~~--~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~---~g~~v~~~~pd-G~ 245 (307)
T COG3386 172 PDGKTLYVADTPA--NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW---GGGRVVRFNPD-GK 245 (307)
T ss_pred CCCCEEEEEeCCC--CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc---CCceEEEECCC-Cc
Confidence 9999888876643 2677777752 111111 11111122234566788888888765544 43 89999999 77
Q ss_pred eeee--ccccceeeEEEC-CCCCEEEEEEc
Q 005140 549 TMAT--AEHFMATDVEWD-PTGRYVATAVT 575 (712)
Q Consensus 549 ~~~~--~~~~~v~~~~~s-pdg~~l~t~s~ 575 (712)
++.. .....+++++|- |+.+.|...+.
T Consensus 246 l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 246 LLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred EEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 7665 344677777775 45565555554
No 458
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0064 Score=63.74 Aligned_cols=75 Identities=23% Similarity=0.343 Sum_probs=64.9
Q ss_pred ccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCCC--ee-EEEecCCCCEEEEEcCCCCCCCcCCCccEEEEE
Q 005140 215 TESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQ--VK-LIDFSPGEKYLVTYSSHEPSNPRDANRVVINIF 290 (712)
Q Consensus 215 ~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~--v~-~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iw 290 (712)
.+..+.|+|.-.+||++...| +.+.... ++++-+++.++ ++ +++|.|||+.||.|-.| |+|++-
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kd----------G~I~L~ 89 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKD----------GTIRLH 89 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec--cceeEeccCCCCccceeeeecCCCCEEEEEecC----------CeEEEE
Confidence 456789999999999999999 8888776 77888887443 66 99999999999999999 999999
Q ss_pred EccCCceeeec
Q 005140 291 DVRTGKVMRDF 301 (712)
Q Consensus 291 d~~~g~~~~~~ 301 (712)
|+.+|..+..+
T Consensus 90 Dve~~~~l~~~ 100 (665)
T KOG4640|consen 90 DVEKGGRLVSF 100 (665)
T ss_pred EccCCCceecc
Confidence 99999888774
No 459
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.63 E-value=0.86 Score=45.42 Aligned_cols=234 Identities=12% Similarity=0.142 Sum_probs=118.3
Q ss_pred CCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC-ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCe
Q 005140 263 PGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG-KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNM 341 (712)
Q Consensus 263 pdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~ 341 (712)
..++.|+.|..+ | |.++++... ...+...... +. .+...+ +-+.++..+|+.
T Consensus 5 ~~~~~L~vGt~~----------G-l~~~~~~~~~~~~~i~~~~~--I~-------------ql~vl~-~~~~llvLsd~~ 57 (275)
T PF00780_consen 5 SWGDRLLVGTED----------G-LYVYDLSDPSKPTRILKLSS--IT-------------QLSVLP-ELNLLLVLSDGQ 57 (275)
T ss_pred cCCCEEEEEECC----------C-EEEEEecCCccceeEeecce--EE-------------EEEEec-ccCEEEEEcCCc
Confidence 457889999887 7 889998322 2222222211 21 466777 778888888999
Q ss_pred EEEEEcCCceecccc--------------cccccCeeeEE---ECCCCCeEEEEeecCCCCCCCeEEEEEecCCc---cc
Q 005140 342 ISVYETESFTLIDKK--------------SLKVENVMDFS---WSPTDPIISLFVPELGGGNQPARVSLVQIPSK---EE 401 (712)
Q Consensus 342 i~iwd~~~~~~~~~~--------------~~~~~~v~~~~---~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~---~~ 401 (712)
+.+|++......... .....++..++ -......|++. ....+.|+.|..+.. +.
T Consensus 58 l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va------~kk~i~i~~~~~~~~~f~~~ 131 (275)
T PF00780_consen 58 LYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA------VKKKILIYEWNDPRNSFSKL 131 (275)
T ss_pred cEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEE------ECCEEEEEEEECCcccccce
Confidence 999998865443311 11223455555 12223445542 233566666665422 23
Q ss_pred eeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecC----------CCCceEEEEE
Q 005140 402 LRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDN----------KNDKIIAFAW 471 (712)
Q Consensus 402 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~----------h~~~v~~~~~ 471 (712)
++... .......+.|. ++.++++..+. +.+.++.... +........ ...++..+..
T Consensus 132 ~ke~~-lp~~~~~i~~~--~~~i~v~~~~~----------f~~idl~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (275)
T PF00780_consen 132 LKEIS-LPDPPSSIAFL--GNKICVGTSKG----------FYLIDLNTGS-PSELLDPSDSSSSFKSRNSSSKPLGIFQL 197 (275)
T ss_pred eEEEE-cCCCcEEEEEe--CCEEEEEeCCc----------eEEEecCCCC-ceEEeCccCCcchhhhcccCCCceEEEEe
Confidence 33322 23444556677 67777776543 3455554221 111111100 0122333333
Q ss_pred eeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeee
Q 005140 472 EPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA 551 (712)
Q Consensus 472 sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~ 551 (712)
+++.+|++ ..+ .-.+.+.. |... + ...-.... ...++++ ...||+... ++.|.||++.+++++.
T Consensus 198 -~~~e~Ll~-~~~----~g~fv~~~-G~~~-r-~~~i~W~~-~p~~~~~--~~pyli~~~----~~~iEV~~~~~~~lvQ 261 (275)
T PF00780_consen 198 -SDNEFLLC-YDN----IGVFVNKN-GEPS-R-KSTIQWSS-APQSVAY--SSPYLIAFS----SNSIEVRSLETGELVQ 261 (275)
T ss_pred -CCceEEEE-ecc----eEEEEcCC-CCcC-c-ccEEEcCC-chhEEEE--ECCEEEEEC----CCEEEEEECcCCcEEE
Confidence 34444443 322 22333432 2211 0 11112222 3344444 234777665 5669999999998887
Q ss_pred ecccccee
Q 005140 552 TAEHFMAT 559 (712)
Q Consensus 552 ~~~~~~v~ 559 (712)
+.....+.
T Consensus 262 ~i~~~~~~ 269 (275)
T PF00780_consen 262 TIPLPNIR 269 (275)
T ss_pred EEECCCEE
Confidence 76554443
No 460
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.63 E-value=0.78 Score=44.93 Aligned_cols=155 Identities=14% Similarity=0.121 Sum_probs=87.0
Q ss_pred CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccccccc
Q 005140 362 NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTG 441 (712)
Q Consensus 362 ~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~ 441 (712)
.+...++|+++..+++.. ..+....++............ .........|+++|...++......
T Consensus 25 ~~~s~AvS~dg~~~A~v~----~~~~~~~L~~~~~~~~~~~~~---~g~~l~~PS~d~~g~~W~v~~~~~~--------- 88 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVS----EGDGGRSLYVGPAGGPVRPVL---TGGSLTRPSWDPDGWVWTVDDGSGG--------- 88 (253)
T ss_pred cccceEECCCCCeEEEEE----EcCCCCEEEEEcCCCcceeec---cCCccccccccCCCCEEEEEcCCCc---------
Confidence 578899999999888753 134445565554432211110 1123445679999776666543332
Q ss_pred EEEEEEecC-CcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeeccccc--Cce-eEEEEeC--CCce
Q 005140 442 FELFRIKER-DIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHA--GRV-SKLTTLK--GKQA 515 (712)
Q Consensus 442 ~~l~~l~~~-~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~--~~~-~~~~~~~--~~~v 515 (712)
..++.-... ......+....-.+.|.+|.+||||.++|+...++....|.+--+...... ... ..+.... ...+
T Consensus 89 ~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v 168 (253)
T PF10647_consen 89 VRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDV 168 (253)
T ss_pred eEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcc
Confidence 233321111 111111222111238999999999999999985433347888776532211 111 1112221 3367
Q ss_pred eEEEEccCCCeEEEEec
Q 005140 516 NALFWSPSGRFIVLAGL 532 (712)
Q Consensus 516 ~~l~~spdg~~l~~~~~ 532 (712)
..+.|.+++.+++.+..
T Consensus 169 ~~v~W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 169 TDVAWSDDSTLVVLGRS 185 (253)
T ss_pred eeeeecCCCEEEEEeCC
Confidence 89999999988887765
No 461
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.60 E-value=0.00059 Score=71.12 Aligned_cols=148 Identities=11% Similarity=0.287 Sum_probs=94.6
Q ss_pred ecCCCCceEEEEEee-CCCEEEEEEcC-CCCCeEEEEEeecccccCceeE-EEEeCCCceeEEEEccCCCeEEEEeccCC
Q 005140 459 LDNKNDKIIAFAWEP-KGHRFAVIHGD-SPRPDISFYSMRTAQHAGRVSK-LTTLKGKQANALFWSPSGRFIVLAGLKGF 535 (712)
Q Consensus 459 l~~h~~~v~~~~~sp-~g~~l~~~~~d-~~~~~v~i~d~~~~~~~~~~~~-~~~~~~~~v~~l~~spdg~~l~~~~~~~~ 535 (712)
.++|..+.++++|++ |.+.||++... .....+.|||+.++-....-.. +..-.....++++|-.+.+.+.+|..
T Consensus 98 tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~--- 174 (783)
T KOG1008|consen 98 TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMT--- 174 (783)
T ss_pred cccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccc---
Confidence 456788999999999 67778877542 1123799999987522111111 11111224568999988888888876
Q ss_pred CceEEEEECC-cceeeeeccccceeeEEECC-CCCEEEEEEccceeccccEEEEEe-c--Cceeeee------cccceee
Q 005140 536 NGQLEFYNVD-ELETMATAEHFMATDVEWDP-TGRYVATAVTSVHEMENGFNIWSF-N--GKLLYRT------LKDHFFQ 604 (712)
Q Consensus 536 dg~v~iwd~~-~~~~~~~~~~~~v~~~~~sp-dg~~l~t~s~~~~~~d~~v~iw~~-~--g~~~~~~------~~~~i~~ 604 (712)
...+.++|++ ............+..+..+| .+.|+++.+ |+.+.+||. . .+.+... ...++..
T Consensus 175 sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~------dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~ 248 (783)
T KOG1008|consen 175 SRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS------DGDIAIWDTYRNIENPLQIILRNENKKPKQLFA 248 (783)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc------cCceeeccchhhhccHHHHHhhCCCCcccceee
Confidence 7789999988 33333333444566777888 777877655 589999993 2 1222211 1246999
Q ss_pred eEEecCCCCCC
Q 005140 605 FLWRPRPPSFL 615 (712)
Q Consensus 605 ~~w~p~~~~l~ 615 (712)
++|.|..+-++
T Consensus 249 ~aycPtrtgll 259 (783)
T KOG1008|consen 249 LAYCPTRTGLL 259 (783)
T ss_pred EEeccCCcchh
Confidence 99999865443
No 462
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.48 E-value=0.0068 Score=49.73 Aligned_cols=58 Identities=22% Similarity=0.331 Sum_probs=35.8
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTN 130 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~ 130 (712)
+++|.+.|++. +...++|+..|++||.|.- |.+... .. -|+|.|.+++.|+.|+..+.
T Consensus 1 G~il~~~g~~~------~~~re~iK~~f~~~g~V~y--VD~~~G----~~--~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 1 GCILKFSGLGE------PTSREDIKEAFSQFGEVAY--VDFSRG----DT--EGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp --EEEEEE--S------S--HHHHHHHT-SS--EEE--EE--TT-----S--EEEEEESS---HHHHHHHHH
T ss_pred CeEEEEecCCC------CcCHHHHHHHHHhcCCcce--EEecCC----CC--EEEEEECCcchHHHHHHHHH
Confidence 46889999886 5558999999999999877 655543 33 68999999999999998754
No 463
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.39 E-value=0.83 Score=44.04 Aligned_cols=179 Identities=14% Similarity=0.112 Sum_probs=105.5
Q ss_pred ceEEEcCCCcEEEEEecCc---eEEeecccCcceeeeecCCC---eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEE
Q 005140 217 SFVQWSPLGTYLATVHRQG---AAVWGGANTFNRLMRYAHPQ---VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIF 290 (712)
Q Consensus 217 ~~v~~Spdg~~lat~~~~~---i~iw~~~~~~~~~~~~~~~~---v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iw 290 (712)
-.+.|..+|.++-+.+..| ++.++.. +++.+.+...+. -..++...|.-+.+|.-. +...+|
T Consensus 48 QGL~~~~~g~LyESTG~yG~S~l~~~d~~-tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~-----------~~~f~y 115 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGLYGQSSLRKVDLE-TGKVLQSVPLPPRYFGEGITILGDKLYQLTWKE-----------GTGFVY 115 (264)
T ss_dssp EEEEEEETTEEEEEECSTTEEEEEEEETT-TSSEEEEEE-TTT--EEEEEEETTEEEEEESSS-----------SEEEEE
T ss_pred ccEEecCCCEEEEeCCCCCcEEEEEEECC-CCcEEEEEECCccccceeEEEECCEEEEEEecC-----------CeEEEE
Confidence 3578878899888888766 7799999 777666554432 445566555445555543 588999
Q ss_pred EccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccc-----cCee
Q 005140 291 DVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKV-----ENVM 364 (712)
Q Consensus 291 d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~-----~~v~ 364 (712)
|..+-+.+.++...... |- ++ . |++.|+.+. ...|.++|..+++......... ..++
T Consensus 116 d~~tl~~~~~~~y~~EG-------------WG-Lt--~-dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LN 178 (264)
T PF05096_consen 116 DPNTLKKIGTFPYPGEG-------------WG-LT--S-DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLN 178 (264)
T ss_dssp ETTTTEEEEEEE-SSS---------------E-EE--E-CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EE
T ss_pred ccccceEEEEEecCCcc-------------eE-EE--c-CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcE
Confidence 99999998888765322 64 55 3 666555554 8899999988887665544332 3467
Q ss_pred eEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeee--------------eec-ceeEEECcCCCEEEEEEc
Q 005140 365 DFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLF--------------SVS-DCKMYWQSSGDYLAVKVD 429 (712)
Q Consensus 365 ~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--------------~~~-~~~~~~s~~g~~l~~~~~ 429 (712)
.+.|- +|...|= -=.+-.|..++..+++......+. ... -..++|.|.+..|.+...
T Consensus 179 ELE~i-~G~IyAN-------VW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 179 ELEYI-NGKIYAN-------VWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEE-TTEEEEE-------ETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred eEEEE-cCEEEEE-------eCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 77776 4443331 122335666666665543322110 011 124688888888877666
Q ss_pred ccc
Q 005140 430 RYT 432 (712)
Q Consensus 430 ~~~ 432 (712)
...
T Consensus 251 ~Wp 253 (264)
T PF05096_consen 251 LWP 253 (264)
T ss_dssp T-S
T ss_pred CCC
Confidence 544
No 464
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.015 Score=61.11 Aligned_cols=90 Identities=18% Similarity=0.383 Sum_probs=70.4
Q ss_pred CCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCcee-EEEEccCCCeEEEEeccCCCceE
Q 005140 463 NDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQAN-ALFWSPSGRFIVLAGLKGFNGQL 539 (712)
Q Consensus 463 ~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~-~l~~spdg~~l~~~~~~~~dg~v 539 (712)
...+.-+.|+|.-..||++..+| .|-++.+. +..+.+++ +..++ +++|.|||+.|++|-. ||+|
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~g---elli~R~n-------~qRlwtip~p~~~v~~sL~W~~DGkllaVg~k---dG~I 86 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKG---ELLIHRLN-------WQRLWTIPIPGENVTASLCWRPDGKLLAVGFK---DGTI 86 (665)
T ss_pred ccceEEEEEcCccchhheeccCC---cEEEEEec-------cceeEeccCCCCccceeeeecCCCCEEEEEec---CCeE
Confidence 44567789999999999999988 88888774 12555555 44565 9999999999999998 9999
Q ss_pred EEEECCcceeeee---ccccceeeEEECC
Q 005140 540 EFYNVDELETMAT---AEHFMATDVEWDP 565 (712)
Q Consensus 540 ~iwd~~~~~~~~~---~~~~~v~~~~~sp 565 (712)
.+-|..++..+.. .-...|+++.|+|
T Consensus 87 ~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 87 RLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EEEEccCCCceeccccccccchheeeccc
Confidence 9999998877765 2235667777763
No 465
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.34 E-value=0.19 Score=52.98 Aligned_cols=145 Identities=17% Similarity=0.265 Sum_probs=85.6
Q ss_pred EEecCCCCCEEEEec----CCeEEEEEcCCceecccccccccCeeeEEECCCC-----CeEEEEeecCCCCCCCeEEEEE
Q 005140 324 FRWGGGKDKYFAKLG----KNMISVYETESFTLIDKKSLKVENVMDFSWSPTD-----PIISLFVPELGGGNQPARVSLV 394 (712)
Q Consensus 324 ~~~s~~dg~~la~~~----d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~-----~~la~~~~~~~~~~~~~~i~~~ 394 (712)
++|. ||+.++-.. +|.+++=|.. .+ ..++.|.+++|+|-+ .+||+ .....+.||.+
T Consensus 25 laWT--DGkqVvLT~L~l~~gE~kfGds~---vi----GqFEhV~GlsW~P~~~~~~paLLAV------QHkkhVtVWqL 89 (671)
T PF15390_consen 25 LAWT--DGKQVVLTDLQLHNGEPKFGDSK---VI----GQFEHVHGLSWAPPCTADTPALLAV------QHKKHVTVWQL 89 (671)
T ss_pred eEec--CCCEEEEEeeeeeCCccccCCcc---Ee----eccceeeeeeecCcccCCCCceEEE------eccceEEEEEe
Confidence 5665 666554332 4554443322 22 455679999999963 35564 14455666666
Q ss_pred ecCC---ccceeeee-----eeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCce
Q 005140 395 QIPS---KEELRQKN-----LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKI 466 (712)
Q Consensus 395 ~~~~---~~~~~~~~-----~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v 466 (712)
.... .+.+.... .+.+-.....|+|....|++.+.+.. -.++.++..+..+. ..+ ...+.|
T Consensus 90 ~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv---------SV~~sV~~d~srVk-aDi-~~~G~I 158 (671)
T PF15390_consen 90 CPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV---------SVLPSVHCDSSRVK-ADI-KTSGLI 158 (671)
T ss_pred ccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce---------eEeeeeeeCCceEE-Eec-cCCceE
Confidence 5432 22222211 12222233469999999998776654 34566655444432 223 337889
Q ss_pred EEEEEeeCCCEEEEEEcCCCCCeEEEEEee
Q 005140 467 IAFAWEPKGHRFAVIHGDSPRPDISFYSMR 496 (712)
Q Consensus 467 ~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~ 496 (712)
+|.+|.+||++|+++.+..- .-+|||-.
T Consensus 159 hCACWT~DG~RLVVAvGSsL--HSyiWd~~ 186 (671)
T PF15390_consen 159 HCACWTKDGQRLVVAVGSSL--HSYIWDSA 186 (671)
T ss_pred EEEEecCcCCEEEEEeCCeE--EEEEecCc
Confidence 99999999999999887542 56778754
No 466
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=96.32 E-value=0.0083 Score=63.49 Aligned_cols=72 Identities=15% Similarity=0.191 Sum_probs=58.3
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccC---CCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDP---ETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~---~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~ 134 (712)
.-+.+||+||+- ...++.|-..|+.||.|.. +.+++-+ +..+.+-.+||.|-+..+|++|++.|+|..+
T Consensus 173 ~TTNlyv~Nlnp------sv~E~~ll~tfGrfgPlas--vKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv 244 (877)
T KOG0151|consen 173 QTTNLYVGNLNP------SVDENFLLRTFGRFGPLAS--VKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV 244 (877)
T ss_pred cccceeeecCCc------cccHHHHHHHhcccCcccc--eeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee
Confidence 457999999995 3348999999999999988 6555433 3455677899999999999999999999876
Q ss_pred CCc
Q 005140 135 DRA 137 (712)
Q Consensus 135 ~~~ 137 (712)
...
T Consensus 245 ~~~ 247 (877)
T KOG0151|consen 245 MEY 247 (877)
T ss_pred eee
Confidence 653
No 467
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.27 E-value=0.32 Score=47.68 Aligned_cols=139 Identities=12% Similarity=0.105 Sum_probs=82.8
Q ss_pred ccceEEEcCCCcEEEEEe--cCceEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEE-
Q 005140 215 TESFVQWSPLGTYLATVH--RQGAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFD- 291 (712)
Q Consensus 215 ~v~~v~~Spdg~~lat~~--~~~i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd- 291 (712)
.+.++++|+||+.+|... .++..||-............-..+...+|+++|...+....+ ...+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~----------~~~~~~~~ 94 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGS----------GGVRVVRD 94 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCC----------CceEEEEe
Confidence 678899999999998877 555444433311222222233368899999998777666655 4455553
Q ss_pred ccCCceee-eccCCCc--ccccCCCCCcCCCCcCeEEecCCCCCEEEEec----CCeEEEEEcC---Cc--eec-ccccc
Q 005140 292 VRTGKVMR-DFKGSAD--EFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG----KNMISVYETE---SF--TLI-DKKSL 358 (712)
Q Consensus 292 ~~~g~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~----d~~i~iwd~~---~~--~~~-~~~~~ 358 (712)
..++.... ....... .+. .+++|| ||..+|... ++.|.+--+. .+ ..+ .....
T Consensus 95 ~~~g~~~~~~v~~~~~~~~I~-------------~l~vSp-DG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~ 160 (253)
T PF10647_consen 95 SASGTGEPVEVDWPGLRGRIT-------------ALRVSP-DGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRV 160 (253)
T ss_pred cCCCcceeEEecccccCCceE-------------EEEECC-CCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEe
Confidence 33333211 1111110 221 799999 999988776 6777776543 22 111 11111
Q ss_pred ---cccCeeeEEECCCCCeEEE
Q 005140 359 ---KVENVMDFSWSPTDPIISL 377 (712)
Q Consensus 359 ---~~~~v~~~~~sp~~~~la~ 377 (712)
....+..++|.+++.+++.
T Consensus 161 ~~~~~~~v~~v~W~~~~~L~V~ 182 (253)
T PF10647_consen 161 APPLLSDVTDVAWSDDSTLVVL 182 (253)
T ss_pred cccccCcceeeeecCCCEEEEE
Confidence 1345889999999987776
No 468
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.26 E-value=0.0074 Score=60.02 Aligned_cols=75 Identities=24% Similarity=0.318 Sum_probs=56.3
Q ss_pred cCcccccC--CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEecc---C--CCCCc--------ccEEEE
Q 005140 50 DDQEVESG--FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVD---P--ETQKS--------LGYCFI 114 (712)
Q Consensus 50 ~~~~~~~~--~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d---~--~~~~~--------~g~~fv 114 (712)
+-|+++.- -+.+|++-|||- +.+-+-|.+||+.+|.|+. |.+-.- + ..|.. +-.|||
T Consensus 220 Plp~~~~eel~srtivaenLP~------Dh~~enl~kiFg~~G~Iks--IRIckPgaip~d~r~~~~~~~~~~tk~~Alv 291 (484)
T KOG1855|consen 220 PLPEFDEEELPSRTIVAENLPL------DHSYENLSKIFGTVGSIKS--IRICKPGAIPEDVRGFPKKYFELQTKECALV 291 (484)
T ss_pred CCCCccccccccceEEEecCCc------chHHHHHHHHhhcccceee--eeecCCCCCCcccccCCccchhhhhhhhhhh
Confidence 44444433 578999999998 6667889999999999988 766332 1 13333 456899
Q ss_pred EeCCHHHHHHHHHHhCCC
Q 005140 115 EYNTPQEAELAKEKTNGY 132 (712)
Q Consensus 115 ~~~~~~~a~~a~~~~~~~ 132 (712)
+|...+.|.+|.+.+|-.
T Consensus 292 Eye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 292 EYEEVEAARKARELLNPE 309 (484)
T ss_pred hhhhhHHHHHHHHhhchh
Confidence 999999999999988654
No 469
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.20 E-value=1.8 Score=44.34 Aligned_cols=183 Identities=11% Similarity=0.109 Sum_probs=96.6
Q ss_pred CeEEEEEcCCceeccccccccc-Ce---eeEEECCC----CCeEEEEeecCCCCC--CC-eEEEEEecCCc----cceee
Q 005140 340 NMISVYETESFTLIDKKSLKVE-NV---MDFSWSPT----DPIISLFVPELGGGN--QP-ARVSLVQIPSK----EELRQ 404 (712)
Q Consensus 340 ~~i~iwd~~~~~~~~~~~~~~~-~v---~~~~~sp~----~~~la~~~~~~~~~~--~~-~~i~~~~~~~~----~~~~~ 404 (712)
..|+++|..++..+....+... .+ ..+.+..+ ..+|++.+.-..+.+ .. ++|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3577777776666654443322 23 33444443 456665432111111 23 88999998773 12221
Q ss_pred e--eeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEE
Q 005140 405 K--NLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIH 482 (712)
Q Consensus 405 ~--~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~ 482 (712)
. .........+ .+-+.+|+++.... +.+|++.... .............+.++ ...+++++++.
T Consensus 82 i~~~~~~g~V~ai--~~~~~~lv~~~g~~----------l~v~~l~~~~-~l~~~~~~~~~~~i~sl--~~~~~~I~vgD 146 (321)
T PF03178_consen 82 IHSTEVKGPVTAI--CSFNGRLVVAVGNK----------LYVYDLDNSK-TLLKKAFYDSPFYITSL--SVFKNYILVGD 146 (321)
T ss_dssp EEEEEESS-EEEE--EEETTEEEEEETTE----------EEEEEEETTS-SEEEEEEE-BSSSEEEE--EEETTEEEEEE
T ss_pred EEEEeecCcceEh--hhhCCEEEEeecCE----------EEEEEccCcc-cchhhheecceEEEEEE--eccccEEEEEE
Confidence 1 1122233333 23245566666542 6899998776 12222221112344444 44577999888
Q ss_pred cCCCCCeEEEEEeecccccCceeEEEE-eCCCceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 483 GDSPRPDISFYSMRTAQHAGRVSKLTT-LKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 483 ~d~~~~~v~i~d~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
... .+.++..+... ..+..+.. .....+.++.+-++++.++++.. +|.|.++...
T Consensus 147 ~~~---sv~~~~~~~~~--~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~---~gnl~~l~~~ 202 (321)
T PF03178_consen 147 AMK---SVSLLRYDEEN--NKLILVARDYQPRWVTAAEFLVDEDTIIVGDK---DGNLFVLRYN 202 (321)
T ss_dssp SSS---SEEEEEEETTT--E-EEEEEEESS-BEEEEEEEE-SSSEEEEEET---TSEEEEEEE-
T ss_pred ccc---CEEEEEEEccC--CEEEEEEecCCCccEEEEEEecCCcEEEEEcC---CCeEEEEEEC
Confidence 766 68887665422 12333333 22446788888877777777777 8999998776
No 470
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.17 E-value=0.31 Score=47.02 Aligned_cols=153 Identities=14% Similarity=0.194 Sum_probs=95.2
Q ss_pred cCCCcccceEEEcCCCcEEEEEecCceEEeecccCcceeeeecCCC---eeEEEecCCCCEEEEEcCCCCCCCcCCCccE
Q 005140 210 KRSYWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQ---VKLIDFSPGEKYLVTYSSHEPSNPRDANRVV 286 (712)
Q Consensus 210 ~~~~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~~---v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~ 286 (712)
.+-...++++.|+|+.+.|.+.....-.|..+...+..+.+++..+ ...|.+.-+|+|.++--.+ +.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~----------~~ 151 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERD----------RA 151 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhc----------ce
Confidence 3444558999999999998888887754444443788888887554 5678899999999988887 78
Q ss_pred EEEEEccCCceeeeccCCCcccccCCCCC-cCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCce-ecc---------
Q 005140 287 INIFDVRTGKVMRDFKGSADEFAVGGTGG-VAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT-LID--------- 354 (712)
Q Consensus 287 I~iwd~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~-~~~--------- 354 (712)
+.++.+..+..+..+... .+..+.... -.|. .-++|.| .+..|...- .+-+.||.+.... .+.
T Consensus 152 l~~~~vd~~t~~~~~~~~--~i~L~~~~k~N~Gf--EGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~ 226 (316)
T COG3204 152 LYLFTVDADTTVISAKVQ--KIPLGTTNKKNKGF--EGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTA 226 (316)
T ss_pred EEEEEEcCCccEEeccce--EEeccccCCCCcCc--eeeecCC-CCceEEEEEccCCcEEEEEecCCcccccccccCccc
Confidence 888887655333222221 111111111 1222 2589999 777766666 6777777665221 110
Q ss_pred cccccccCeeeEEECCCCCeEEE
Q 005140 355 KKSLKVENVMDFSWSPTDPIISL 377 (712)
Q Consensus 355 ~~~~~~~~v~~~~~sp~~~~la~ 377 (712)
...+....|.++.|.+....|.+
T Consensus 227 ~~~~f~~DvSgl~~~~~~~~LLV 249 (316)
T COG3204 227 DRDLFVLDVSGLEFNAITNSLLV 249 (316)
T ss_pred ccceEeeccccceecCCCCcEEE
Confidence 01122345778888877555554
No 471
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.10 E-value=0.32 Score=54.65 Aligned_cols=135 Identities=12% Similarity=0.128 Sum_probs=80.8
Q ss_pred CCCeEEEEEecCCccceeeeeeeeecceeEEECcCC-------CEEEEEEcccccccccccccEEEEEEecCCcceeEEE
Q 005140 386 NQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSG-------DYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLE 458 (712)
Q Consensus 386 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g-------~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 458 (712)
...-.|+.+|+..++.+....+..... -..+.|+. ...++|.+++. +..|+.+..+..+..-.
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~-v~~~~p~~K~aqlt~e~tflGls~n~---------lfriDpR~~~~k~v~~~ 570 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIP-VVDIAPDSKFAQLTNEQTFLGLSDNS---------LFRIDPRLSGNKLVDSQ 570 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcc-eeEecccccccccCCCceEEEECCCc---------eEEeccCCCCCceeecc
Confidence 356679999999998887766544221 11223332 12233333332 34444444332211101
Q ss_pred e--cCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEeccC
Q 005140 459 L--DNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKG 534 (712)
Q Consensus 459 l--~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~~~ 534 (712)
. ........|++-+.+| +||+|+.+| .|++||--... .-..++ +.+|.++..+.||++|+..+
T Consensus 571 ~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G---~IRLyd~~g~~------AKT~lp~lG~pI~~iDvt~DGkwilaTc--- 637 (794)
T PF08553_consen 571 SKQYSSKNNFSCFATTEDG-YIAVGSNKG---DIRLYDRLGKR------AKTALPGLGDPIIGIDVTADGKWILATC--- 637 (794)
T ss_pred ccccccCCCceEEEecCCc-eEEEEeCCC---cEEeecccchh------hhhcCCCCCCCeeEEEecCCCcEEEEee---
Confidence 1 1234456777776665 789999999 99999942211 222333 56899999999999999887
Q ss_pred CCceEEEEEC
Q 005140 535 FNGQLEFYNV 544 (712)
Q Consensus 535 ~dg~v~iwd~ 544 (712)
+..|.+++.
T Consensus 638 -~tyLlLi~t 646 (794)
T PF08553_consen 638 -KTYLLLIDT 646 (794)
T ss_pred -cceEEEEEE
Confidence 577888775
No 472
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.04 E-value=0.0073 Score=38.48 Aligned_cols=35 Identities=29% Similarity=0.445 Sum_probs=29.7
Q ss_pred cccccCCCcccceEEEcCCCcEEEEEecCc-eEEee
Q 005140 206 EPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWG 240 (712)
Q Consensus 206 ~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~ 240 (712)
...+..|...+.+++|+|++.++++++.++ +.+|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345567788899999999999999999998 77885
No 473
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.00 E-value=0.99 Score=46.11 Aligned_cols=135 Identities=13% Similarity=0.158 Sum_probs=85.9
Q ss_pred hhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee-
Q 005140 174 KWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY- 251 (712)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~- 251 (712)
...+|...+..|++++|.-+.+.-..+...-+...--...+.+.++.||+|.+.||.-..+. |.+.+.. ..+.....
T Consensus 27 gvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~-~d~~~l~~~ 105 (657)
T KOG2377|consen 27 GVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFI-PDNSQLEYT 105 (657)
T ss_pred ceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecC-CCchhhHHH
Confidence 45666667777888887766655444444444444445567999999999999999998887 7788774 22222222
Q ss_pred -----cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC-ceeeeccCCCcccccCCCCCcCCCCcCeEE
Q 005140 252 -----AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG-KVMRDFKGSADEFAVGGTGGVAGVSWPVFR 325 (712)
Q Consensus 252 -----~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (712)
....|....|+.+ .-+|..+.. | +-+|-+... +.+|..+.+...+ .| ..
T Consensus 106 ~~ck~k~~~IlGF~W~~s-~e~A~i~~~----------G-~e~y~v~pekrslRlVks~~~nv-----------nW--y~ 160 (657)
T KOG2377|consen 106 QECKTKNANILGFCWTSS-TEIAFITDQ----------G-IEFYQVLPEKRSLRLVKSHNLNV-----------NW--YM 160 (657)
T ss_pred HHhccCcceeEEEEEecC-eeEEEEecC----------C-eEEEEEchhhhhhhhhhhcccCc-----------cE--EE
Confidence 2334899999877 445555544 3 667765433 3455555554443 36 57
Q ss_pred ecCCCCCEEE
Q 005140 326 WGGGKDKYFA 335 (712)
Q Consensus 326 ~s~~dg~~la 335 (712)
|.+ +...+.
T Consensus 161 yc~-et~v~L 169 (657)
T KOG2377|consen 161 YCP-ETAVIL 169 (657)
T ss_pred Ecc-ccceEe
Confidence 888 776443
No 474
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.93 E-value=2.4 Score=43.48 Aligned_cols=247 Identities=13% Similarity=0.150 Sum_probs=117.3
Q ss_pred eEEecCCCCCEEEEecCCeEEEEEcCCcee---cccc----cccccCeeeEEECCC----CCeEEEEeec-CCCCCCCeE
Q 005140 323 VFRWGGGKDKYFAKLGKNMISVYETESFTL---IDKK----SLKVENVMDFSWSPT----DPIISLFVPE-LGGGNQPAR 390 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~d~~i~iwd~~~~~~---~~~~----~~~~~~v~~~~~sp~----~~~la~~~~~-~~~~~~~~~ 390 (712)
.++|.| ||+++++-..|.|.+++ ..+.. +... .....+...++++|+ +.+.++++.. ........+
T Consensus 6 ~~a~~p-dG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~ 83 (331)
T PF07995_consen 6 SMAFLP-DGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNR 83 (331)
T ss_dssp EEEEET-TSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEE
T ss_pred EEEEeC-CCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCccee
Confidence 589999 99998877799999999 33332 1111 112246899999995 3444443321 111233445
Q ss_pred EEEEecCCc-------ccee-eeee---eeecceeEEECcCCCEEEEEEccccc--cccc-ccccEEEEEEecCCcc---
Q 005140 391 VSLVQIPSK-------EELR-QKNL---FSVSDCKMYWQSSGDYLAVKVDRYTK--TKKS-TYTGFELFRIKERDIP--- 453 (712)
Q Consensus 391 i~~~~~~~~-------~~~~-~~~~---~~~~~~~~~~s~~g~~l~~~~~~~~~--~~~~-~~~~~~l~~l~~~~~~--- 453 (712)
|..+..... +.+. .... .......|.|.|+| +|++...+... ..+. ....-.++++...+..
T Consensus 84 v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~d 162 (331)
T PF07995_consen 84 VVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPAD 162 (331)
T ss_dssp EEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TT
T ss_pred eEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCCcccccccccccceEEEecccCcCCCC
Confidence 666655433 1111 1111 11223457899999 55554444332 0111 1112256677654431
Q ss_pred ----------eeEEEecCCCCceEEEEEeeC-CCEEEEEEcCCCCCeEEEEEeeccccc---------------------
Q 005140 454 ----------IEVLELDNKNDKIIAFAWEPK-GHRFAVIHGDSPRPDISFYSMRTAQHA--------------------- 501 (712)
Q Consensus 454 ----------~~~~~l~~h~~~v~~~~~sp~-g~~l~~~~~d~~~~~v~i~d~~~~~~~--------------------- 501 (712)
.+.... ++ .....++|+|. |..+++-.+... .=.|.-+..+...
T Consensus 163 nP~~~~~~~~~~i~A~-Gl-RN~~~~~~d~~tg~l~~~d~G~~~--~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~ 238 (331)
T PF07995_consen 163 NPFVGDDGADSEIYAY-GL-RNPFGLAFDPNTGRLWAADNGPDG--WDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPS 238 (331)
T ss_dssp STTTTSTTSTTTEEEE----SEEEEEEEETTTTEEEEEEE-SSS--SEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred CccccCCCceEEEEEe-CC-CccccEEEECCCCcEEEEccCCCC--CcEEEEeccCCcCCCCCCcCCCCCCCCccccccC
Confidence 111111 22 34557999998 777665544321 1222223322110
Q ss_pred --CceeEEEEeCCC-ceeEEEEcc-------CCCeEEEEeccCCCceEEEEECCcceeee-e-----ccccceeeEEECC
Q 005140 502 --GRVSKLTTLKGK-QANALFWSP-------SGRFIVLAGLKGFNGQLEFYNVDELETMA-T-----AEHFMATDVEWDP 565 (712)
Q Consensus 502 --~~~~~~~~~~~~-~v~~l~~sp-------dg~~l~~~~~~~~dg~v~iwd~~~~~~~~-~-----~~~~~v~~~~~sp 565 (712)
.-..++..+..+ .+..+.|-. .|.+++..-. .+.|....++....+. . .....+.++++.|
T Consensus 239 ~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p 315 (331)
T PF07995_consen 239 CPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYG---GGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP 315 (331)
T ss_dssp -TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETT---TTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET
T ss_pred CCCcCccceeecCccccCceEEECCccCccccCcEEEecCC---CCEEEEEeeecCCCccceEEccccCCCCceEEEEcC
Confidence 001133333333 345555543 3344444332 5677777766332221 1 1224788999999
Q ss_pred CCCEEEEEEccceeccccE
Q 005140 566 TGRYVATAVTSVHEMENGF 584 (712)
Q Consensus 566 dg~~l~t~s~~~~~~d~~v 584 (712)
||...++... ++.|
T Consensus 316 DG~Lyv~~d~-----~G~i 329 (331)
T PF07995_consen 316 DGALYVSDDS-----DGKI 329 (331)
T ss_dssp TSEEEEEE-T-----TTTE
T ss_pred CCeEEEEECC-----CCeE
Confidence 9987777666 5655
No 475
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=95.87 E-value=0.02 Score=58.23 Aligned_cols=69 Identities=20% Similarity=0.443 Sum_probs=56.2
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 135 (712)
-+.+|-+.|||+ ...+++|.+.|+-. .|+.++|.||.|+ .+++.|=|||.|++.+.|++|+.. |...+.
T Consensus 102 ~d~vVRLRGLPf------scte~dI~~FFaGL-~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r-hre~iG 170 (510)
T KOG4211|consen 102 NDGVVRLRGLPF------SCTEEDIVEFFAGL-EIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGR-HRENIG 170 (510)
T ss_pred CCceEEecCCCc------cCcHHHHHHHhcCC-cccccceeeeccC-CCCcccceEEEecCHHHHHHHHHH-HHHhhc
Confidence 456999999997 55589999999966 4445579999998 788999999999999999999874 334444
No 476
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=95.85 E-value=0.022 Score=59.55 Aligned_cols=68 Identities=22% Similarity=0.423 Sum_probs=53.1
Q ss_pred HHHHHHhhccCeeeeceEEEecc-C--CCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEEEEEeecccccc
Q 005140 80 GVIRKIYSQIGVIKEDGLWMPVD-P--ETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFDDFDKF 151 (712)
Q Consensus 80 ~~l~~~f~~~g~v~~~~~~~~~d-~--~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l~v~~~~~~~~~ 151 (712)
++++.-+++||.|.. |.+|.+ . ...-.-|--||+|++.+++++|...|+|.++.++ ..|..+-+.++|
T Consensus 424 Edvr~ec~k~g~v~~--v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nR--tVvtsYydeDkY 494 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRS--VEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANR--TVVASYYDEDKY 494 (500)
T ss_pred HHHHHHhcccCceeE--EecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCc--EEEEEecCHHHh
Confidence 446666999999999 999988 2 2345567889999999999999999999999986 334444444554
No 477
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.83 E-value=3.8 Score=44.96 Aligned_cols=100 Identities=14% Similarity=0.143 Sum_probs=63.2
Q ss_pred CceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeec---cccceeeEEECCCCCEEEEEEccceeccccEEEEEe
Q 005140 513 KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATA---EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSF 589 (712)
Q Consensus 513 ~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~---~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~ 589 (712)
..+..+..||+.++|+.-.. .|.+.+-+.+..+.+... .+...-.++|..+...+++ . +..+.+..-
T Consensus 217 ~~~~ki~VS~n~~~laLyt~---~G~i~~vs~D~~~~lce~~~~~~~~p~qm~WcgndaVvl~--~-----e~~l~lvgp 286 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTE---TGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGNDAVVLS--W-----EVNLMLVGP 286 (829)
T ss_pred ceEEEEEEcCCcceEEEEec---CCcEEEEecchhhhhhccCCCCCCchHhceeecCCceEEE--E-----eeeEEEEcC
Confidence 45778999999999999887 999999988865555432 2334447888877632222 2 345555555
Q ss_pred cCceeeeecccceeeeEEecCCCCCCChhhHHHH
Q 005140 590 NGKLLYRTLKDHFFQFLWRPRPPSFLTPEKEEEI 623 (712)
Q Consensus 590 ~g~~~~~~~~~~i~~~~w~p~~~~l~s~~~d~~i 623 (712)
.|..+.-.....+. +.--+||-.++|.+...-+
T Consensus 287 ~gd~V~f~yd~t~~-l~~E~DGVRI~t~t~~EFl 319 (829)
T KOG2280|consen 287 PGDSVQFYYDETAI-LSAEVDGVRIITSTSHEFL 319 (829)
T ss_pred CCCccccccCCCce-eeeccCeeEEeccchHHHH
Confidence 55444322222222 6666788788876655443
No 478
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=95.83 E-value=0.026 Score=57.52 Aligned_cols=66 Identities=21% Similarity=0.367 Sum_probs=53.0
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
...|-+.|||+ ..++++|.+.|+.++ |.. +.++.+ +|++.|=|||+|.+.|++++|+++ |-..+..
T Consensus 10 ~~~vr~rGLPw------sat~~ei~~Ff~~~~-I~~--~~~~r~--~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~ 75 (510)
T KOG4211|consen 10 AFEVRLRGLPW------SATEKEILDFFSNCG-IEN--LEIPRR--NGRPSGEAYVEFTSEEDVEKALKK-DRESMGH 75 (510)
T ss_pred ceEEEecCCCc------cccHHHHHHHHhcCc-eeE--EEEecc--CCCcCcceEEEeechHHHHHHHHh-hHHHhCC
Confidence 34889999999 666999999999886 455 556654 799999999999999999999984 4444443
No 479
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.78 E-value=2.3 Score=43.88 Aligned_cols=238 Identities=13% Similarity=0.164 Sum_probs=103.4
Q ss_pred CCCEEEEec--CCeEEEEEcCCce----e---cccccc----cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEec
Q 005140 330 KDKYFAKLG--KNMISVYETESFT----L---IDKKSL----KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQI 396 (712)
Q Consensus 330 dg~~la~~~--d~~i~iwd~~~~~----~---~~~~~~----~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~ 396 (712)
+.++|+..+ ++.|.|.|+.+.- + +....+ .......+..-|+|.++++..... .+++.+.+.+++.
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~-~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDA-DGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEET-TS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCC-CCCCCCcEEEEcC
Confidence 456777777 8999999987421 1 111001 112234556678887777654432 2477778888888
Q ss_pred CCccceeeeeee---eecceeEEECcCCCEEEEEEcccc-----------cccccccccEEEEEEecCCcceeEEEecCC
Q 005140 397 PSKEELRQKNLF---SVSDCKMYWQSSGDYLAVKVDRYT-----------KTKKSTYTGFELFRIKERDIPIEVLELDNK 462 (712)
Q Consensus 397 ~~~~~~~~~~~~---~~~~~~~~~s~~g~~l~~~~~~~~-----------~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h 462 (712)
.+.......... ..-...+-|+|.-+.+++..-... .....+-..+.+|++... .....+.+...
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r-~~~Q~idLg~~ 243 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR-KLLQTIDLGEE 243 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT-EEEEEEES-TT
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC-cEeeEEecCCC
Confidence 776554433221 122334567887777776533211 011123346889988764 23344555221
Q ss_pred CCceEEEEE--eeCCCEEEEEEc-CCCCCeEEEEEeecccccCceeEEEEeCCC-------------------ceeEEEE
Q 005140 463 NDKIIAFAW--EPKGHRFAVIHG-DSPRPDISFYSMRTAQHAGRVSKLTTLKGK-------------------QANALFW 520 (712)
Q Consensus 463 ~~~v~~~~~--sp~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-------------------~v~~l~~ 520 (712)
...+..+.| .|+..+=.+++. .+ +|..|--.. .+....+.+..++.. -++.|.+
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss---~i~~~~k~~-~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~i 319 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSS---SIWRFYKDD-DGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILI 319 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--E---EEEEEEE-E-TTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE
T ss_pred CCceEEEEecCCCCccceEEEEeccc---eEEEEEEcC-CCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEE
Confidence 122334444 454444333333 33 454443321 122223344444321 2588999
Q ss_pred ccCCCeEEEEeccCCCceEEEEECCcc---eeeee---------cc---------ccceeeEEECCCCCEEEEEEc
Q 005140 521 SPSGRFIVLAGLKGFNGQLEFYNVDEL---ETMAT---------AE---------HFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 521 spdg~~l~~~~~~~~dg~v~iwd~~~~---~~~~~---------~~---------~~~v~~~~~spdg~~l~t~s~ 575 (712)
|.|.++|.+++. ..|.|+.||+..- +++.+ .. .+...-+..|-||+.|...++
T Consensus 320 SlDDrfLYvs~W--~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 320 SLDDRFLYVSNW--LHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -TTS-EEEEEET--TTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred ccCCCEEEEEcc--cCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 999999999987 4899999999841 22211 00 123356889999998877665
No 480
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=95.78 E-value=0.026 Score=58.30 Aligned_cols=71 Identities=15% Similarity=0.190 Sum_probs=52.6
Q ss_pred hHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEEEEEeecccccccCCCC
Q 005140 78 LEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFDDFDKFMKVPD 156 (712)
Q Consensus 78 ~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~ 156 (712)
..+++.+-.++||.|. +|-+|+ .+-|+-||.|.+.+.|..|++.|||..|+|+ .++...+....-+..+|+
T Consensus 466 I~edV~Eec~k~g~v~----hi~vd~---ns~g~VYvrc~s~~~A~~a~~alhgrWF~gr-~Ita~~~~~~~Y~~~FP~ 536 (549)
T KOG0147|consen 466 IREDVIEECGKHGKVC----HIFVDK---NSAGCVYVRCPSAEAAGTAVKALHGRWFAGR-MITAKYLPLERYHSKFPD 536 (549)
T ss_pred HHHHHHHHHHhcCCee----EEEEcc---CCCceEEEecCcHHHHHHHHHHHhhhhhccc-eeEEEEeehhhhhhhCCC
Confidence 3455556669999994 455565 3449999999999999999999999999996 777766544333333444
No 481
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=95.67 E-value=0.11 Score=56.15 Aligned_cols=102 Identities=16% Similarity=0.271 Sum_probs=63.4
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEE
Q 005140 256 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA 335 (712)
Q Consensus 256 v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la 335 (712)
-..++|-|.|..++|...|...+ ...|+.+. ++|-.-..|... .+...... ..+|.- ....+|
T Consensus 249 e~~LSWkpqgS~~ati~td~~~~-----S~~ViFfE-rNGLrHGef~lr-----~~~dEk~~-----~~~wn~-~s~vla 311 (1243)
T COG5290 249 EHQLSWKPQGSKYATIGTDGCST-----SESVIFFE-RNGLRHGEFDLR-----VGCDEKAF-----LENWNL-LSTVLA 311 (1243)
T ss_pred hhccccccCCceeeeeccCCCCC-----cceEEEEc-cCCcccCCcccc-----CCchhhhh-----hhhhhH-HHHHHH
Confidence 34689999999999988662221 13566665 344322222111 00111112 356666 666677
Q ss_pred EecCCeEEEEEcCCceecccccccccCeeeEEECCCCCe
Q 005140 336 KLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPI 374 (712)
Q Consensus 336 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 374 (712)
.+..+.+.+|-..+....-+.....+++.-+.|+|....
T Consensus 312 v~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~n 350 (1243)
T COG5290 312 VAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEKN 350 (1243)
T ss_pred HhhcceEEEEEccceEEEEEEeecCCCcceeeeccccCc
Confidence 666899999988876655556677888999999997543
No 482
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.46 E-value=3.8 Score=42.44 Aligned_cols=236 Identities=12% Similarity=0.126 Sum_probs=102.7
Q ss_pred CCCEEEEEcCCCCCCCcCCCccEEEEEEccCC----ceeeeccCCCcccccCCCCCcCCCCcC-eEEecCCCCCEEEEec
Q 005140 264 GEKYLVTYSSHEPSNPRDANRVVINIFDVRTG----KVMRDFKGSADEFAVGGTGGVAGVSWP-VFRWGGGKDKYFAKLG 338 (712)
Q Consensus 264 dg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~dg~~la~~~ 338 (712)
+-++|+..+... +.|.|+|+.+. +..+.+....-.. ..+++.| .+..-| +|.+++++-
T Consensus 86 ~Rr~Li~PgL~S---------srIyviD~~~dPr~P~l~KvIe~~ev~~-------k~g~s~PHT~Hclp-~G~imIS~l 148 (461)
T PF05694_consen 86 ERRYLILPGLRS---------SRIYVIDTKTDPRKPRLHKVIEPEEVFE-------KTGLSRPHTVHCLP-DGRIMISAL 148 (461)
T ss_dssp -S-EEEEEBTTT-----------EEEEE--S-TTS-EEEEEE-HHHHHH-------HH-EEEEEEEEE-S-S--EEEEEE
T ss_pred cCCcEEeeeecc---------CcEEEEECCCCCCCCceEeeeCHHHHHh-------hcCCCCCceeeecC-CccEEEEec
Confidence 457888877552 68999998643 2333332200000 0011111 234457 887776653
Q ss_pred -------CCeEEEEEcCCceeccccccc---ccCeeeEEECCCCCeEEEEeec------CCC--CC-----CCeEEEEEe
Q 005140 339 -------KNMISVYETESFTLIDKKSLK---VENVMDFSWSPTDPIISLFVPE------LGG--GN-----QPARVSLVQ 395 (712)
Q Consensus 339 -------d~~i~iwd~~~~~~~~~~~~~---~~~v~~~~~sp~~~~la~~~~~------~~~--~~-----~~~~i~~~~ 395 (712)
.|.+.++|-+++.+...-... ..--.++-|.|..+.+++..-. .|- .+ ---++.+|+
T Consensus 149 Gd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD 228 (461)
T PF05694_consen 149 GDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWD 228 (461)
T ss_dssp EETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEE
T ss_pred cCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEE
Confidence 356888888877766433221 1224678889988877762100 000 00 113678888
Q ss_pred cCCccceeeeeeeee----cceeEEECcCCCEEEEEEcccccccccccccEEEEEEec--CC-cc-eeEEEecCC-----
Q 005140 396 IPSKEELRQKNLFSV----SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKE--RD-IP-IEVLELDNK----- 462 (712)
Q Consensus 396 ~~~~~~~~~~~~~~~----~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~--~~-~~-~~~~~l~~h----- 462 (712)
..+++.+....+... -.+++.+.|+..+-++++.-.. .+|.+.. .+ -. ...++++..
T Consensus 229 ~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss----------~i~~~~k~~~g~W~a~kVi~ip~~~v~~~ 298 (461)
T PF05694_consen 229 WSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSS----------SIWRFYKDDDGEWAAEKVIDIPAKKVEGW 298 (461)
T ss_dssp TTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--E----------EEEEEEE-ETTEEEEEEEEEE--EE--SS
T ss_pred CCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccc----------eEEEEEEcCCCCeeeeEEEECCCcccCcc
Confidence 888887777666532 2345566777776555444221 2333322 11 11 111222211
Q ss_pred ------------CCceEEEEEeeCCCEEEEEEc-CCCCCeEEEEEeecccccCceeEEEEeC-CC---------------
Q 005140 463 ------------NDKIIAFAWEPKGHRFAVIHG-DSPRPDISFYSMRTAQHAGRVSKLTTLK-GK--------------- 513 (712)
Q Consensus 463 ------------~~~v~~~~~sp~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~--------------- 513 (712)
..-|+.+.+|.|.++|.++.- .| .|+.||+...... +++..+. ++
T Consensus 299 ~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~G---dvrqYDISDP~~P---kl~gqv~lGG~~~~~~~~~v~g~~l 372 (461)
T PF05694_consen 299 ILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHG---DVRQYDISDPFNP---KLVGQVFLGGSIRKGDHPVVKGKRL 372 (461)
T ss_dssp ---GGGGGG-EE------EEE-TTS-EEEEEETTTT---EEEEEE-SSTTS----EEEEEEE-BTTTT-B--TTS-----
T ss_pred cccccccccccCCCceEeEEEccCCCEEEEEcccCC---cEEEEecCCCCCC---cEEeEEEECcEeccCCCcccccccc
Confidence 244789999999999998876 56 8999999764332 2333221 11
Q ss_pred --ceeEEEEccCCCeEEEEec
Q 005140 514 --QANALFWSPSGRFIVLAGL 532 (712)
Q Consensus 514 --~v~~l~~spdg~~l~~~~~ 532 (712)
...-+..|-||+.|.+.+.
T Consensus 373 ~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 373 RGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -S----EEE-TTSSEEEEE--
T ss_pred CCCCCeEEEccCCeEEEEEee
Confidence 1245888999999988753
No 483
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.41 E-value=1.2 Score=36.57 Aligned_cols=94 Identities=16% Similarity=0.203 Sum_probs=56.8
Q ss_pred eEEEEEee-CC---CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEE
Q 005140 466 IIAFAWEP-KG---HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLE 540 (712)
Q Consensus 466 v~~~~~sp-~g---~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~ 540 (712)
|+++++.. +| +.|++++.|. .|++|+-.. .+..+. ...+.+++-...++ ++.+-. +|+|-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~---~IRvf~~~e--------~~~Ei~e~~~v~~L~~~~~~~-F~Y~l~---NGTVG 66 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDF---EIRVFKGDE--------IVAEITETDKVTSLCSLGGGR-FAYALA---NGTVG 66 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCc---EEEEEeCCc--------EEEEEecccceEEEEEcCCCE-EEEEec---CCEEE
Confidence 55666655 32 5889999999 999998532 455554 44678877777654 555655 89999
Q ss_pred EEECCcceeeeeccccceeeEEE-CC--CCC-EEEEEEc
Q 005140 541 FYNVDELETMATAEHFMATDVEW-DP--TGR-YVATAVT 575 (712)
Q Consensus 541 iwd~~~~~~~~~~~~~~v~~~~~-sp--dg~-~l~t~s~ 575 (712)
+|+-... +-.......++++++ +. ||. -|++|-.
T Consensus 67 vY~~~~R-lWRiKSK~~~~~~~~~D~~gdG~~eLI~Gws 104 (111)
T PF14783_consen 67 VYDRSQR-LWRIKSKNQVTSMAFYDINGDGVPELIVGWS 104 (111)
T ss_pred EEeCcce-eeeeccCCCeEEEEEEcCCCCCceEEEEEec
Confidence 9976522 222222223444433 33 333 4666665
No 484
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=95.40 E-value=0.074 Score=48.77 Aligned_cols=76 Identities=20% Similarity=0.429 Sum_probs=62.3
Q ss_pred cCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 005140 56 SGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135 (712)
Q Consensus 56 ~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 135 (712)
.....++++.|||. +.....|..+|.+|.--.+ +.+.-. .+|.|||+|.+...|.-|...+.|..+.
T Consensus 143 ~ppn~ilf~~niP~------es~~e~l~~lf~qf~g~ke--ir~i~~-----~~~iAfve~~~d~~a~~a~~~lq~~~it 209 (221)
T KOG4206|consen 143 APPNNILFLTNIPS------ESESEMLSDLFEQFPGFKE--IRLIPP-----RSGIAFVEFLSDRQASAAQQALQGFKIT 209 (221)
T ss_pred CCCceEEEEecCCc------chhHHHHHHHHhhCcccce--eEeccC-----CCceeEEecchhhhhHHHhhhhccceec
Confidence 44678999999998 5558889999999987777 766543 4589999999999999999999999887
Q ss_pred CceEEEEEe
Q 005140 136 RAHIFAVNM 144 (712)
Q Consensus 136 ~~~~l~v~~ 144 (712)
..|...+..
T Consensus 210 ~~~~m~i~~ 218 (221)
T KOG4206|consen 210 KKNTMQITF 218 (221)
T ss_pred cCceEEecc
Confidence 777776654
No 485
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.34 E-value=0.51 Score=38.66 Aligned_cols=65 Identities=15% Similarity=0.183 Sum_probs=45.0
Q ss_pred eeEEEecC---CC-CEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC
Q 005140 256 VKLIDFSP---GE-KYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 331 (712)
Q Consensus 256 v~~i~~Sp---dg-~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg 331 (712)
|++++++. || +.|+.|+.| ..|+||+ ....+..+.-..... .+.-.. .+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D----------~~IRvf~--~~e~~~Ei~e~~~v~--------------~L~~~~-~~ 54 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDD----------FEIRVFK--GDEIVAEITETDKVT--------------SLCSLG-GG 54 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCC----------cEEEEEe--CCcEEEEEecccceE--------------EEEEcC-CC
Confidence 56666654 33 689999999 8999997 557777776665544 455555 54
Q ss_pred CEEEEec-CCeEEEEEcC
Q 005140 332 KYFAKLG-KNMISVYETE 348 (712)
Q Consensus 332 ~~la~~~-d~~i~iwd~~ 348 (712)
.|+.+. +|+|-+|+-.
T Consensus 55 -~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 55 -RFAYALANGTVGVYDRS 71 (111)
T ss_pred -EEEEEecCCEEEEEeCc
Confidence 455555 9999999754
No 486
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.19 E-value=6 Score=43.14 Aligned_cols=77 Identities=18% Similarity=0.131 Sum_probs=44.1
Q ss_pred CCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCC-CCEEEEecCCeEE
Q 005140 265 EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK-DKYFAKLGKNMIS 343 (712)
Q Consensus 265 g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d-g~~la~~~d~~i~ 343 (712)
+..++.++.+ +.|.-.|..+|+.+-.+........ ....+ +.-+ +.. . + +..++...++.|.
T Consensus 61 ~g~vy~~~~~----------g~l~AlD~~tG~~~W~~~~~~~~~~--~~~~~--~~~g-~~~-~-~~~~V~v~~~~g~v~ 123 (488)
T cd00216 61 DGDMYFTTSH----------SALFALDAATGKVLWRYDPKLPADR--GCCDV--VNRG-VAY-W-DPRKVFFGTFDGRLV 123 (488)
T ss_pred CCEEEEeCCC----------CcEEEEECCCChhhceeCCCCCccc--ccccc--ccCC-cEE-c-cCCeEEEecCCCeEE
Confidence 4456666767 7888999999988777654432100 00000 0000 111 1 3 4444433499999
Q ss_pred EEEcCCceecccccc
Q 005140 344 VYETESFTLIDKKSL 358 (712)
Q Consensus 344 iwd~~~~~~~~~~~~ 358 (712)
-+|..+|+.+.+...
T Consensus 124 AlD~~TG~~~W~~~~ 138 (488)
T cd00216 124 ALDAETGKQVWKFGN 138 (488)
T ss_pred EEECCCCCEeeeecC
Confidence 999999988866543
No 487
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=95.14 E-value=0.013 Score=57.76 Aligned_cols=70 Identities=17% Similarity=0.360 Sum_probs=58.4
Q ss_pred CCCEEE-ECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 58 FGNIIV-VDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 58 ~~~~~~-v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
-...++ |.+|+. ...+.+|.+.|..+|.|.. +.+|.++.++..+|||+|.|.....+..|+.. ....+.+
T Consensus 183 ~s~~~~~~~~~~f------~~~~d~~~~~~~~~~~i~~--~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~ 253 (285)
T KOG4210|consen 183 PSDTIFFVGELDF------SLTRDDLKEHFVSSGEITS--VRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGG 253 (285)
T ss_pred ccccceeeccccc------ccchHHHhhhccCcCccee--eccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccC
Confidence 344555 999997 3347888899999999999 99999999999999999999999999888775 5555554
No 488
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.00 E-value=0.063 Score=36.47 Aligned_cols=34 Identities=15% Similarity=0.275 Sum_probs=30.5
Q ss_pred cceeeEEECCCCCEEEEEEccceeccccEEEEEecCcee
Q 005140 556 FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLL 594 (712)
Q Consensus 556 ~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~ 594 (712)
..|..++|+|....||.++. +|.|.|+.++++.+
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~-----~g~v~v~Rl~~qri 45 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTE-----DGEVLVYRLNWQRI 45 (47)
T ss_pred CcEEEEEECCCCCEEEEEEC-----CCeEEEEECCCcCc
Confidence 56889999999999999999 99999999987654
No 489
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=94.93 E-value=7 Score=42.60 Aligned_cols=212 Identities=15% Similarity=0.148 Sum_probs=113.2
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEE
Q 005140 256 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA 335 (712)
Q Consensus 256 v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la 335 (712)
+-.++.|||+++||.+-.. .+...-++++-|+.+|..+......... .++|.+ |++.|.
T Consensus 131 Lg~~~~s~D~~~la~s~D~-----~G~e~y~lr~kdL~tg~~~~d~i~~~~~---------------~~~Wa~-d~~~lf 189 (682)
T COG1770 131 LGAASISPDHNLLAYSVDV-----LGDEQYTLRFKDLATGEELPDEITNTSG---------------SFAWAA-DGKTLF 189 (682)
T ss_pred eeeeeeCCCCceEEEEEec-----ccccEEEEEEEecccccccchhhccccc---------------ceEEec-CCCeEE
Confidence 6788899999999876544 1222368999999999865543322111 589999 998776
Q ss_pred Eec--CC--eEEEEEcCCce--ecccccccccC---eeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeee
Q 005140 336 KLG--KN--MISVYETESFT--LIDKKSLKVEN---VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKN 406 (712)
Q Consensus 336 ~~~--d~--~i~iwd~~~~~--~~~~~~~~~~~---v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 406 (712)
... ++ .-++|-..-+. .......+... ..++.-+.+..+|+.. .+...+..+++++..........-
T Consensus 190 Yt~~d~~~rp~kv~~h~~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~----~~~~~tsE~~ll~a~~p~~~p~vv 265 (682)
T COG1770 190 YTRLDENHRPDKVWRHRLGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVIS----LGSHITSEVRLLDADDPEAEPKVV 265 (682)
T ss_pred EEEEcCCCCcceEEEEecCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEE----cCCCcceeEEEEecCCCCCceEEE
Confidence 665 22 23444332222 11111111111 2233334456666653 224455667776654432111111
Q ss_pred eeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCC
Q 005140 407 LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSP 486 (712)
Q Consensus 407 ~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~ 486 (712)
..........-...|.+++..++...+ ++.|+.......+.....+..|...+.--.++--..+|+....++.
T Consensus 266 ~pr~~g~eY~~eh~~d~f~i~sN~~gk-------nf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~g 338 (682)
T COG1770 266 LPRENGVEYSVEHGGDRFYILSNADGK-------NFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEG 338 (682)
T ss_pred EEcCCCcEEeeeecCcEEEEEecCCCc-------ceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccC
Confidence 111111222223345666655554331 2455554431111222334467777666667777788888888776
Q ss_pred CCeEEEEEeeccc
Q 005140 487 RPDISFYSMRTAQ 499 (712)
Q Consensus 487 ~~~v~i~d~~~~~ 499 (712)
.+.|.+++.+++.
T Consensus 339 lp~v~v~~~~~~~ 351 (682)
T COG1770 339 LPRVVVRDRKTGE 351 (682)
T ss_pred CceEEEEecCCCc
Confidence 7789999886554
No 490
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=94.89 E-value=0.072 Score=33.52 Aligned_cols=33 Identities=21% Similarity=0.478 Sum_probs=28.6
Q ss_pred ecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEE
Q 005140 459 LDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYS 494 (712)
Q Consensus 459 l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d 494 (712)
+..|...|.+++|+|.+..+++++.++ .+++|+
T Consensus 8 ~~~~~~~i~~~~~~~~~~~~~~~~~d~---~~~~~~ 40 (40)
T smart00320 8 LKGHTGPVTSVAFSPDGKYLASASDDG---TIKLWD 40 (40)
T ss_pred EEecCCceeEEEECCCCCEEEEecCCC---eEEEcC
Confidence 346788999999999999999999998 899885
No 491
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=94.85 E-value=0.13 Score=51.20 Aligned_cols=75 Identities=20% Similarity=0.270 Sum_probs=61.4
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.++|.|.||-. ...+...|.-+|+-||.|.+ |.|...+ + --|.|.|.+...|+.|+..|+|..+.++
T Consensus 297 n~vllvsnln~-----~~VT~d~LftlFgvYGdVqR--Vkil~nk--k---d~ALIQmsd~~qAqLA~~hL~g~~l~gk- 363 (492)
T KOG1190|consen 297 NVVLLVSNLNE-----EAVTPDVLFTLFGVYGDVQR--VKILYNK--K---DNALIQMSDGQQAQLAMEHLEGHKLYGK- 363 (492)
T ss_pred ceEEEEecCch-----hccchhHHHHHHhhhcceEE--EEeeecC--C---cceeeeecchhHHHHHHHHhhcceecCc-
Confidence 68899999983 02236679999999999999 9888765 2 3599999999999999999999999885
Q ss_pred EEEEEeec
Q 005140 139 IFAVNMFD 146 (712)
Q Consensus 139 ~l~v~~~~ 146 (712)
.++|..-+
T Consensus 364 ~lrvt~SK 371 (492)
T KOG1190|consen 364 KLRVTLSK 371 (492)
T ss_pred eEEEeecc
Confidence 77776644
No 492
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.85 E-value=0.13 Score=41.43 Aligned_cols=76 Identities=18% Similarity=0.277 Sum_probs=48.3
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEE-EeccC------CCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLW-MPVDP------ETQKSLGYCFIEYNTPQEAELAKEKTNG 131 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~-~~~d~------~~~~~~g~~fv~~~~~~~a~~a~~~~~~ 131 (712)
++-|.|=|-|. . ....+.+.|++||.|.+ .. +..+. ..-.....--|.|.++.+|.+|+. -||
T Consensus 6 ~~wVtVFGfp~------~-~~~~Vl~~F~~~G~Ile--~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG 75 (100)
T PF05172_consen 6 ETWVTVFGFPP------S-ASNQVLRHFSSFGTILE--HFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNG 75 (100)
T ss_dssp CCEEEEE---G------G-GHHHHHHHHHCCS-EEC--EEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTT
T ss_pred CeEEEEEccCH------H-HHHHHHHHHHhcceEEE--eecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCC
Confidence 34688888885 2 26668889999999988 53 11110 001233589999999999999988 599
Q ss_pred CccCCceEEEEEe
Q 005140 132 YKLDRAHIFAVNM 144 (712)
Q Consensus 132 ~~~~~~~~l~v~~ 144 (712)
..+.+.-..-|..
T Consensus 76 ~i~~g~~mvGV~~ 88 (100)
T PF05172_consen 76 TIFSGSLMVGVKP 88 (100)
T ss_dssp EEETTCEEEEEEE
T ss_pred eEEcCcEEEEEEE
Confidence 9998863333433
No 493
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=94.82 E-value=8.8 Score=43.64 Aligned_cols=121 Identities=12% Similarity=0.043 Sum_probs=68.6
Q ss_pred ceEEeecccCcceeeeecCC-CeeEEEecCCCC-------EEEEEcCCCCCCCcCCCccEEEEEEccCC-ceeeeccCCC
Q 005140 235 GAAVWGGANTFNRLMRYAHP-QVKLIDFSPGEK-------YLVTYSSHEPSNPRDANRVVINIFDVRTG-KVMRDFKGSA 305 (712)
Q Consensus 235 ~i~iw~~~~~~~~~~~~~~~-~v~~i~~Spdg~-------~l~t~s~d~~~~~~~~~~~~I~iwd~~~g-~~~~~~~~~~ 305 (712)
++.-.|++ .++.+..+... .+.-..+.|+.+ ..+.|-.+ ..+..||.+-. ..+..-..+.
T Consensus 505 ~ly~mDLe-~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~----------n~lfriDpR~~~~k~v~~~~k~ 573 (794)
T PF08553_consen 505 KLYKMDLE-RGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSD----------NSLFRIDPRLSGNKLVDSQSKQ 573 (794)
T ss_pred ceEEEecC-CCcEEEEeecCCCcceeEecccccccccCCCceEEEECC----------CceEEeccCCCCCceeeccccc
Confidence 36677888 88888877533 344455555432 22334444 56889998642 2221111111
Q ss_pred cccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEE
Q 005140 306 DEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISL 377 (712)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~ 377 (712)
. ..+..+.|++-+. +| +||.++ +|.|++||-...+....+..-..+|.++..+.||++|+.
T Consensus 574 Y---------~~~~~Fs~~aTt~-~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwila 635 (794)
T PF08553_consen 574 Y---------SSKNNFSCFATTE-DG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILA 635 (794)
T ss_pred c---------ccCCCceEEEecC-Cc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEE
Confidence 1 1112244666666 65 556666 999999995432211111122346999999999999985
No 494
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.74 E-value=0.12 Score=35.17 Aligned_cols=32 Identities=6% Similarity=0.163 Sum_probs=28.7
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCce
Q 005140 255 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKV 297 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~ 297 (712)
.|.+++|||....||.+..+ |.|.|+.+ +++.
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~----------g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTED----------GEVLVYRL-NWQR 44 (47)
T ss_pred cEEEEEECCCCCEEEEEECC----------CeEEEEEC-CCcC
Confidence 49999999999999999999 99999997 6654
No 495
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.57 E-value=2.6 Score=42.17 Aligned_cols=147 Identities=14% Similarity=0.153 Sum_probs=73.8
Q ss_pred cCCCcccceEEEcCCCcEEEEEecCce-EEeecc-cCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEE
Q 005140 210 KRSYWTESFVQWSPLGTYLATVHRQGA-AVWGGA-NTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVI 287 (712)
Q Consensus 210 ~~~~~~v~~v~~Spdg~~lat~~~~~i-~iw~~~-~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I 287 (712)
..-...+..+.-++||+|+|++....+ .-|+.- +...+..+.....|.+|.|+|++...+.+ .. +.|
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~G----------g~~ 209 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RG----------GQI 209 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TT----------TEE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CC----------cEE
Confidence 444567888899999999999977775 477643 23555566556679999999998876655 55 566
Q ss_pred EEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceecccccc--c-ccCee
Q 005140 288 NIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSL--K-VENVM 364 (712)
Q Consensus 288 ~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~--~-~~~v~ 364 (712)
+.=+. .....++..+.... ...+...-.++|.+ ++...|+++.|.+ +...+.|+.-.+... . ...+.
T Consensus 210 ~~s~~--~~~~~~w~~~~~~~------~~~~~~~ld~a~~~-~~~~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~ 279 (302)
T PF14870_consen 210 QFSDD--PDDGETWSEPIIPI------KTNGYGILDLAYRP-PNEIWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLY 279 (302)
T ss_dssp EEEE---TTEEEEE---B-TT------SS--S-EEEEEESS-SS-EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---
T ss_pred EEccC--CCCccccccccCCc------ccCceeeEEEEecC-CCCEEEEeCCccE-EEeCCCCccceECccccCCCCceE
Confidence 66551 11222222211110 00111111679999 9999998888865 345555543322211 2 23477
Q ss_pred eEEECCCCCeEEE
Q 005140 365 DFSWSPTDPIISL 377 (712)
Q Consensus 365 ~~~~sp~~~~la~ 377 (712)
.+.|.+..+-+++
T Consensus 280 ~i~f~~~~~gf~l 292 (302)
T PF14870_consen 280 RIVFVNPDKGFVL 292 (302)
T ss_dssp EEEEEETTEEEEE
T ss_pred EEEEcCCCceEEE
Confidence 7777766666665
No 496
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=94.53 E-value=0.12 Score=53.24 Aligned_cols=64 Identities=16% Similarity=0.131 Sum_probs=54.4
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhh-ccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHH
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYS-QIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEK 128 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~-~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~ 128 (712)
+...+|||||||. ...-.+|..||. -||.|.- +-|=+|++-+-+||-|=|+|++...-.+||..
T Consensus 368 DprrTVFVGgvpr------pl~A~eLA~imd~lyGgV~y--aGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPR------PLTAEELAMIMEDLFGGVLY--VGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCC------cchHHHHHHHHHHhcCceEE--EEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 3568999999997 444777999999 5999988 77888877889999999999999988888874
No 497
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.42 E-value=0.12 Score=58.04 Aligned_cols=89 Identities=19% Similarity=0.196 Sum_probs=59.0
Q ss_pred EEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee---cCC--CeeE
Q 005140 185 FVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY---AHP--QVKL 258 (712)
Q Consensus 185 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~---~~~--~v~~ 258 (712)
.+++++.+.+...+....-.+...-.+-..+|++++|+.+|+.++.|..+| |.+||.. ..+.+..+ .++ +|..
T Consensus 102 ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~-~~k~l~~i~e~~ap~t~vi~ 180 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMH-RAKILKVITEHGAPVTGVIF 180 (1206)
T ss_pred EEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEcc-CCcceeeeeecCCccceEEE
Confidence 344555555544333212233233344568999999999999999999999 7799999 65555444 233 4666
Q ss_pred EEecCCCCEEEEEcCC
Q 005140 259 IDFSPGEKYLVTYSSH 274 (712)
Q Consensus 259 i~~Spdg~~l~t~s~d 274 (712)
+.+..++..++++...
T Consensus 181 v~~t~~nS~llt~D~~ 196 (1206)
T KOG2079|consen 181 VGRTSQNSKLLTSDTG 196 (1206)
T ss_pred EEEeCCCcEEEEccCC
Confidence 7777777777777766
No 498
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.32 E-value=0.13 Score=48.79 Aligned_cols=72 Identities=17% Similarity=0.270 Sum_probs=52.5
Q ss_pred hhHHHHHHHhhccCeeeeceEEEeccCCCCCc-ccEEEEEeCCHHHHHHHHHHhCCCccCCceEEEEEeeccccccc
Q 005140 77 KLEGVIRKIYSQIGVIKEDGLWMPVDPETQKS-LGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMFDDFDKFM 152 (712)
Q Consensus 77 ~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~-~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l~v~~~~~~~~~~ 152 (712)
-|+..+.+-+++||+|.. |.|-.++.--.. .---||+|+..++|.+|+-.|||..|+|+ +.+.+.+ +.++|.
T Consensus 298 elede~keEceKyg~V~~--viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr-~v~A~Fy-n~ekfs 370 (378)
T KOG1996|consen 298 ELEDETKEECEKYGKVGN--VIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGR-VVSACFY-NLEKFS 370 (378)
T ss_pred HHHHHHHHHHHhhcceee--EEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecce-eeeheec-cHHhhh
Confidence 477888888999999988 766555411111 22489999999999999999999999986 6655543 445544
No 499
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=94.13 E-value=0.094 Score=54.00 Aligned_cols=64 Identities=19% Similarity=0.332 Sum_probs=47.8
Q ss_pred cCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccC---CCCCccc---EEEEEeCCHHHHHHHHHH
Q 005140 56 SGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDP---ETQKSLG---YCFIEYNTPQEAELAKEK 128 (712)
Q Consensus 56 ~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~---~~~~~~g---~~fv~~~~~~~a~~a~~~ 128 (712)
..++++|||+|||. +..|+.|...|..||.+.- ..|.-. .---++| |+|+.|+++..-...+..
T Consensus 256 ~~~S~KVFvGGlp~------dise~~i~~~F~~FGs~~V---dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a 325 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPW------DITEAQINASFGQFGSVKV---DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA 325 (520)
T ss_pred cccccceeecCCCc------cccHHHHHhhcccccceEe---ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH
Confidence 44899999999998 7779999999999998644 455311 1123477 999999998766655443
No 500
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.11 E-value=2.5 Score=44.13 Aligned_cols=157 Identities=15% Similarity=0.155 Sum_probs=77.0
Q ss_pred ceeEEECcCCCEEEEEEccccccccc-ccccEEEEEEec---CCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCC
Q 005140 412 DCKMYWQSSGDYLAVKVDRYTKTKKS-TYTGFELFRIKE---RDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPR 487 (712)
Q Consensus 412 ~~~~~~s~~g~~l~~~~~~~~~~~~~-~~~~~~l~~l~~---~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~ 487 (712)
...|+|.++|+.+++-..+....... ....-+|+.+.. .+.......+...-...+.+++.++| .++ +...
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~--- 90 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP--- 90 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC---
Confidence 34567888888665543221110000 000114444443 22222222222223456789999988 444 3332
Q ss_pred CeEEEE-Eeeccc-ccCcee-EEEEeCC------CceeEEEEccCCCeEEEEeccC----------------CCceEEEE
Q 005140 488 PDISFY-SMRTAQ-HAGRVS-KLTTLKG------KQANALFWSPSGRFIVLAGLKG----------------FNGQLEFY 542 (712)
Q Consensus 488 ~~v~i~-d~~~~~-~~~~~~-~~~~~~~------~~v~~l~~spdg~~l~~~~~~~----------------~dg~v~iw 542 (712)
.|..| +..... ...+.+ .+..+.. +..+.+.|.|||++.++.+... ..|.|.-+
T Consensus 91 -~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 91 -DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred -eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 45444 332111 110111 2233322 3467899999998776554210 12556666
Q ss_pred ECCcceeeee-ccccceeeEEECCCCCEEEEEE
Q 005140 543 NVDELETMAT-AEHFMATDVEWDPTGRYVATAV 574 (712)
Q Consensus 543 d~~~~~~~~~-~~~~~v~~~~~spdg~~l~t~s 574 (712)
+.++.+.... ........++|+|+|+.+++-.
T Consensus 170 ~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 170 NPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 6664432211 2234567899999999876644
Done!