Query 005140
Match_columns 712
No_of_seqs 886 out of 5019
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 16:37:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005140.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005140hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 2.2E-42 7.5E-47 387.8 40.6 401 171-624 20-561 (611)
2 1nr0_A Actin interacting prote 100.0 3.2E-41 1.1E-45 378.3 39.6 405 170-624 60-605 (611)
3 2ymu_A WD-40 repeat protein; u 100.0 7.1E-40 2.4E-44 365.9 42.5 382 172-624 183-574 (577)
4 2ymu_A WD-40 repeat protein; u 100.0 1E-37 3.6E-42 348.3 42.2 396 170-624 17-451 (577)
5 1vyh_C Platelet-activating fac 100.0 5.1E-36 1.7E-40 319.0 34.7 281 206-589 101-409 (410)
6 3sfz_A APAF-1, apoptotic pepti 100.0 6.7E-36 2.3E-40 364.0 38.5 400 171-618 617-1197(1249)
7 3ow8_A WD repeat-containing pr 100.0 2.8E-35 9.5E-40 302.1 36.2 279 208-589 27-319 (321)
8 2oaj_A Protein SNI1; WD40 repe 100.0 9.4E-36 3.2E-40 346.1 35.6 405 171-624 19-655 (902)
9 1got_B GT-beta; complex (GTP-b 100.0 3.8E-35 1.3E-39 304.1 35.9 280 206-588 48-340 (340)
10 1pgu_A Actin interacting prote 100.0 1.3E-34 4.5E-39 325.7 41.3 415 170-624 19-608 (615)
11 1r5m_A SIR4-interacting protei 100.0 4.7E-35 1.6E-39 313.1 35.4 332 195-591 28-425 (425)
12 3sfz_A APAF-1, apoptotic pepti 100.0 1.4E-35 4.7E-40 361.2 33.5 411 170-623 658-1242(1249)
13 2pbi_B Guanine nucleotide-bind 100.0 2.5E-34 8.5E-39 299.5 36.0 281 205-588 56-354 (354)
14 3iz6_a 40S ribosomal protein R 100.0 3E-35 1E-39 309.8 28.1 289 202-592 55-376 (380)
15 3fm0_A Protein CIAO1; WDR39,SG 100.0 6.8E-34 2.3E-38 295.3 35.8 292 206-592 8-336 (345)
16 4g56_B MGC81050 protein; prote 100.0 2.2E-34 7.4E-39 300.2 31.7 301 183-590 17-342 (357)
17 2oaj_A Protein SNI1; WD40 repe 100.0 9E-35 3.1E-39 337.9 31.5 362 209-624 13-599 (902)
18 2ynn_A Coatomer subunit beta'; 100.0 1.1E-33 3.7E-38 288.2 35.4 285 204-591 4-302 (304)
19 1gxr_A ESG1, transducin-like e 100.0 7.3E-34 2.5E-38 293.8 34.5 317 212-589 8-335 (337)
20 3frx_A Guanine nucleotide-bind 100.0 2.2E-33 7.7E-38 287.9 36.9 286 207-590 11-316 (319)
21 2xzm_R RACK1; ribosome, transl 100.0 3.7E-33 1.3E-37 289.6 38.1 292 206-590 14-339 (343)
22 2pm9_A Protein WEB1, protein t 100.0 6.1E-35 2.1E-39 311.7 25.4 322 213-591 12-414 (416)
23 3mkq_A Coatomer beta'-subunit; 100.0 2E-33 6.9E-38 327.1 36.6 356 204-624 4-417 (814)
24 4gqb_B Methylosome protein 50; 100.0 2E-33 6.7E-38 290.6 32.3 282 211-593 28-333 (344)
25 1erj_A Transcriptional repress 100.0 1.9E-32 6.4E-37 289.9 40.2 289 211-590 62-388 (393)
26 4ery_A WD repeat-containing pr 100.0 2.7E-32 9.2E-37 279.2 37.3 286 205-590 15-311 (312)
27 3mkq_A Coatomer beta'-subunit; 100.0 5.9E-33 2E-37 323.1 34.9 387 172-624 16-454 (814)
28 1vyh_C Platelet-activating fac 100.0 2.2E-32 7.6E-37 290.9 35.1 296 170-545 109-410 (410)
29 1pgu_A Actin interacting prote 100.0 1.9E-32 6.7E-37 308.0 36.5 359 170-590 161-613 (615)
30 2hes_X YDR267CP; beta-propelle 100.0 7.5E-32 2.6E-36 278.0 35.2 290 205-591 6-328 (330)
31 2ynn_A Coatomer subunit beta'; 100.0 8.6E-32 2.9E-36 274.2 32.6 272 252-621 12-294 (304)
32 3vl1_A 26S proteasome regulato 100.0 4.8E-32 1.7E-36 289.7 32.3 320 214-590 57-418 (420)
33 3zwl_B Eukaryotic translation 100.0 5.3E-31 1.8E-35 275.9 38.9 296 206-592 25-347 (369)
34 3ow8_A WD repeat-containing pr 100.0 1.1E-31 3.8E-36 275.2 32.2 265 183-545 49-320 (321)
35 1got_B GT-beta; complex (GTP-b 100.0 7.1E-32 2.4E-36 279.5 30.4 270 252-624 54-337 (340)
36 1gxr_A ESG1, transducin-like e 100.0 2.6E-31 9.1E-36 274.5 33.1 312 172-544 12-335 (337)
37 1r5m_A SIR4-interacting protei 100.0 1.2E-31 4.1E-36 286.6 31.4 323 237-623 28-418 (425)
38 4g56_B MGC81050 protein; prote 100.0 1.9E-32 6.6E-37 285.5 22.3 312 216-624 8-337 (357)
39 4aow_A Guanine nucleotide-bind 100.0 2.2E-30 7.5E-35 268.2 35.5 281 206-590 31-336 (340)
40 2pbi_B Guanine nucleotide-bind 100.0 1.1E-30 3.7E-35 272.0 32.7 271 252-624 63-351 (354)
41 3dm0_A Maltose-binding peripla 100.0 1E-30 3.5E-35 298.0 35.1 280 208-590 377-692 (694)
42 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.5E-31 1.9E-35 273.4 28.6 286 296-624 6-329 (345)
43 1k8k_C P40, ARP2/3 complex 41 100.0 2.3E-30 7.9E-35 271.6 33.0 296 209-590 4-360 (372)
44 3iz6_a 40S ribosomal protein R 100.0 5.2E-31 1.8E-35 277.4 26.7 290 238-624 50-369 (380)
45 4gqb_B Methylosome protein 50; 100.0 2.2E-30 7.4E-35 267.8 30.6 290 157-548 18-333 (344)
46 3frx_A Guanine nucleotide-bind 100.0 3.4E-30 1.2E-34 264.2 31.1 268 253-624 16-311 (319)
47 1sq9_A Antiviral protein SKI8; 100.0 4.6E-30 1.6E-34 272.1 33.0 279 207-591 10-395 (397)
48 4h5i_A Guanine nucleotide-exch 100.0 3.7E-30 1.3E-34 268.9 29.4 299 214-591 15-343 (365)
49 3ei3_B DNA damage-binding prot 100.0 6.1E-30 2.1E-34 269.8 31.1 290 203-591 63-382 (383)
50 3k26_A Polycomb protein EED; W 100.0 2.2E-30 7.6E-35 270.9 27.1 312 209-590 14-365 (366)
51 2pm9_A Protein WEB1, protein t 100.0 6.4E-31 2.2E-35 280.5 23.0 326 172-546 15-414 (416)
52 2j04_B YDR362CP, TAU91; beta p 100.0 1.6E-30 5.3E-35 282.6 24.5 305 229-593 177-519 (524)
53 4e54_B DNA damage-binding prot 100.0 7.3E-30 2.5E-34 274.0 28.6 286 208-591 114-430 (435)
54 1erj_A Transcriptional repress 100.0 4E-29 1.4E-33 264.3 33.4 286 172-546 67-389 (393)
55 2xzm_R RACK1; ribosome, transl 100.0 1E-29 3.5E-34 263.7 27.9 270 253-624 21-334 (343)
56 3vl1_A 26S proteasome regulato 100.0 4.5E-29 1.5E-33 266.6 33.4 321 174-546 61-419 (420)
57 3i2n_A WD repeat-containing pr 100.0 4.9E-29 1.7E-33 259.8 32.3 294 208-549 13-356 (357)
58 3dwl_C Actin-related protein 2 100.0 3.2E-30 1.1E-34 271.3 23.0 298 209-589 7-377 (377)
59 4ery_A WD repeat-containing pr 100.0 3.3E-29 1.1E-33 256.2 29.3 268 254-623 24-305 (312)
60 3v7d_B Cell division control p 100.0 2.4E-28 8.1E-33 264.8 37.0 324 196-588 104-460 (464)
61 4gga_A P55CDC, cell division c 100.0 1.6E-28 5.3E-33 262.4 34.9 278 214-591 106-395 (420)
62 4a11_B DNA excision repair pro 100.0 4.1E-29 1.4E-33 265.5 30.0 350 193-626 24-401 (408)
63 3zwl_B Eukaryotic translation 100.0 8.5E-29 2.9E-33 259.1 31.6 283 253-624 31-340 (369)
64 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.5E-28 1.5E-32 261.0 37.3 322 196-592 102-443 (445)
65 2hes_X YDR267CP; beta-propelle 100.0 8E-29 2.8E-33 255.3 29.7 271 254-624 15-322 (330)
66 3odt_A Protein DOA1; ubiquitin 100.0 3.7E-28 1.3E-32 248.1 33.7 277 203-592 8-297 (313)
67 2j04_A TAU60, YPL007P, hypothe 100.0 8.3E-31 2.8E-35 276.7 14.0 316 214-611 16-374 (588)
68 4aez_A CDC20, WD repeat-contai 100.0 2E-28 6.8E-33 259.8 32.4 275 210-591 88-380 (401)
69 4ggc_A P55CDC, cell division c 100.0 6.1E-28 2.1E-32 247.2 35.0 280 215-590 27-314 (318)
70 1k8k_C P40, ARP2/3 complex 41 100.0 7.4E-29 2.5E-33 260.1 27.9 284 248-624 3-355 (372)
71 3gre_A Serine/threonine-protei 100.0 3.8E-29 1.3E-33 268.7 26.3 299 196-588 47-437 (437)
72 3dw8_B Serine/threonine-protei 100.0 2.2E-28 7.7E-33 263.4 31.2 290 211-589 26-444 (447)
73 3vu4_A KMHSV2; beta-propeller 100.0 7.8E-28 2.7E-32 250.5 33.0 301 196-590 3-335 (355)
74 3dm0_A Maltose-binding peripla 100.0 2.9E-28 9.8E-33 277.8 31.2 273 252-624 381-687 (694)
75 2pm7_B Protein transport prote 100.0 9.2E-28 3.2E-32 243.4 30.8 261 207-545 3-284 (297)
76 3bg1_A Protein SEC13 homolog; 100.0 1E-27 3.5E-32 245.4 30.3 265 208-545 8-292 (316)
77 2pm7_B Protein transport prote 100.0 2.1E-27 7.2E-32 240.8 31.1 241 254-590 10-284 (297)
78 3f3f_A Nucleoporin SEH1; struc 100.0 3.1E-27 1.1E-31 244.8 32.9 302 207-591 5-337 (351)
79 1yfq_A Cell cycle arrest prote 100.0 2E-27 6.7E-32 246.2 30.3 273 209-583 7-315 (342)
80 3k26_A Polycomb protein EED; W 100.0 1.6E-27 5.3E-32 249.2 29.5 292 171-545 20-365 (366)
81 3i2n_A WD repeat-containing pr 100.0 3.4E-27 1.1E-31 245.9 31.3 284 253-591 18-353 (357)
82 1sq9_A Antiviral protein SKI8; 100.0 3.6E-27 1.2E-31 249.7 30.3 288 172-547 19-396 (397)
83 3ei3_B DNA damage-binding prot 100.0 5.1E-27 1.7E-31 247.4 31.3 283 170-546 74-382 (383)
84 3gre_A Serine/threonine-protei 100.0 1.1E-28 3.8E-33 265.1 18.7 308 218-624 32-434 (437)
85 4aow_A Guanine nucleotide-bind 100.0 7.5E-27 2.6E-31 241.5 31.8 270 253-624 37-331 (340)
86 3dwl_C Actin-related protein 2 100.0 6E-29 2.1E-33 261.5 16.1 249 248-590 6-280 (377)
87 4aez_A CDC20, WD repeat-contai 100.0 1.5E-26 5.2E-31 245.3 34.7 272 184-552 105-386 (401)
88 3dw8_B Serine/threonine-protei 100.0 1.2E-27 4.1E-32 257.8 25.7 305 255-620 30-437 (447)
89 4h5i_A Guanine nucleotide-exch 100.0 2.9E-27 9.8E-32 247.0 26.0 259 193-545 44-342 (365)
90 3bg1_A Protein SEC13 homolog; 100.0 3.2E-27 1.1E-31 241.7 25.0 241 253-590 13-292 (316)
91 3v7d_B Cell division control p 100.0 2.6E-26 8.9E-31 248.7 32.4 294 256-617 125-449 (464)
92 2j04_A TAU60, YPL007P, hypothe 100.0 4.6E-27 1.6E-31 248.3 24.5 291 254-620 16-351 (588)
93 2j04_B YDR362CP, TAU91; beta p 100.0 4.5E-27 1.6E-31 255.4 25.1 304 184-545 175-516 (524)
94 3mmy_A MRNA export factor; mRN 100.0 1.4E-26 4.9E-31 242.0 27.9 294 201-545 27-348 (368)
95 3jrp_A Fusion protein of prote 100.0 9.1E-26 3.1E-30 237.0 34.0 254 204-498 2-288 (379)
96 4gga_A P55CDC, cell division c 100.0 7E-26 2.4E-30 241.8 33.5 276 171-550 109-399 (420)
97 4e54_B DNA damage-binding prot 100.0 7.3E-27 2.5E-31 250.6 26.0 290 172-549 122-433 (435)
98 3jrp_A Fusion protein of prote 100.0 3.3E-26 1.1E-30 240.4 29.7 245 250-590 8-286 (379)
99 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.2E-25 4.2E-30 242.2 34.1 279 214-590 5-390 (450)
100 2ovr_B FBW7, F-BOX/WD repeat p 99.9 1E-25 3.4E-30 242.6 32.8 293 260-622 124-430 (445)
101 1k32_A Tricorn protease; prote 99.9 1.3E-25 4.4E-30 267.2 35.6 389 184-619 26-491 (1045)
102 2aq5_A Coronin-1A; WD40 repeat 99.9 5E-26 1.7E-30 241.5 28.4 289 210-549 31-345 (402)
103 3bws_A Protein LP49; two-domai 99.9 5.6E-25 1.9E-29 235.8 35.5 328 215-591 62-432 (433)
104 2xyi_A Probable histone-bindin 99.9 1.7E-25 5.8E-30 239.5 30.5 284 213-594 45-413 (430)
105 3odt_A Protein DOA1; ubiquitin 99.9 1.1E-25 3.7E-30 229.8 26.8 268 245-624 8-290 (313)
106 4a11_B DNA excision repair pro 99.9 3.5E-25 1.2E-29 235.1 31.6 320 170-590 44-404 (408)
107 1l0q_A Surface layer protein; 99.9 1.4E-24 4.9E-29 229.3 35.7 267 184-552 4-281 (391)
108 3mmy_A MRNA export factor; mRN 99.9 1.9E-25 6.4E-30 233.5 28.5 278 244-575 28-335 (368)
109 1p22_A F-BOX/WD-repeat protein 99.9 4.7E-25 1.6E-29 236.6 31.7 266 210-592 130-415 (435)
110 1yfq_A Cell cycle arrest prote 99.9 1.7E-25 5.8E-30 231.6 25.3 274 254-623 12-316 (342)
111 4ggc_A P55CDC, cell division c 99.9 3.2E-24 1.1E-28 219.4 33.8 266 184-547 38-316 (318)
112 2aq5_A Coronin-1A; WD40 repeat 99.9 1.9E-25 6.5E-30 237.0 25.2 267 188-498 53-343 (402)
113 2vdu_B TRNA (guanine-N(7)-)-me 99.9 2.7E-24 9.2E-29 231.7 30.9 272 255-614 6-369 (450)
114 1l0q_A Surface layer protein; 99.9 1.8E-23 6.1E-28 220.8 36.2 269 225-595 2-280 (391)
115 2hqs_A Protein TOLB; TOLB, PAL 99.9 3.9E-24 1.3E-28 227.2 30.5 310 255-612 64-410 (415)
116 3jro_A Fusion protein of prote 99.9 6E-25 2.1E-29 251.8 24.5 252 252-548 8-287 (753)
117 4gq1_A NUP37; propeller, trans 99.9 6.1E-25 2.1E-29 232.0 21.5 262 215-591 91-389 (393)
118 2ecf_A Dipeptidyl peptidase IV 99.9 3.2E-23 1.1E-27 238.3 37.4 335 214-592 37-460 (741)
119 1k32_A Tricorn protease; prote 99.9 1.7E-23 6E-28 248.9 36.2 355 171-590 54-501 (1045)
120 3jro_A Fusion protein of prote 99.9 5.9E-25 2E-29 251.9 21.4 251 207-498 3-286 (753)
121 2hqs_A Protein TOLB; TOLB, PAL 99.9 3.8E-23 1.3E-27 219.5 33.2 308 170-569 65-411 (415)
122 3bws_A Protein LP49; two-domai 99.9 5.6E-23 1.9E-27 220.3 34.4 290 208-546 118-432 (433)
123 3lrv_A PRE-mRNA-splicing facto 99.9 9.9E-24 3.4E-28 218.6 25.3 273 217-592 40-334 (343)
124 1xfd_A DIP, dipeptidyl aminope 99.9 9.6E-24 3.3E-28 241.9 26.8 332 215-575 18-429 (723)
125 1nir_A Nitrite reductase; hemo 99.9 5.9E-22 2E-26 216.9 39.0 334 220-598 144-522 (543)
126 2ecf_A Dipeptidyl peptidase IV 99.9 2.1E-22 7.2E-27 231.5 37.1 341 172-547 39-460 (741)
127 1nir_A Nitrite reductase; hemo 99.9 5.8E-23 2E-27 224.9 30.1 357 176-569 144-533 (543)
128 2xyi_A Probable histone-bindin 99.9 3.8E-23 1.3E-27 221.2 27.7 251 208-547 123-411 (430)
129 2z3z_A Dipeptidyl aminopeptida 99.9 3.5E-22 1.2E-26 228.2 36.7 333 215-592 27-436 (706)
130 3vu4_A KMHSV2; beta-propeller 99.9 6E-23 2.1E-27 213.5 27.6 278 238-624 3-330 (355)
131 3f3f_A Nucleoporin SEH1; struc 99.9 1.3E-22 4.5E-27 209.8 29.2 299 170-499 12-339 (351)
132 1p22_A F-BOX/WD-repeat protein 99.9 1E-22 3.6E-27 218.3 27.1 257 255-624 135-408 (435)
133 2z3z_A Dipeptidyl aminopeptida 99.9 9.2E-22 3.1E-26 224.8 36.5 327 183-548 36-437 (706)
134 2w18_A PALB2, fancn, partner a 99.9 1.8E-22 6.3E-27 200.2 25.8 274 179-589 50-355 (356)
135 3lrv_A PRE-mRNA-splicing facto 99.9 1.3E-21 4.5E-26 202.5 28.0 255 184-495 50-331 (343)
136 3u4y_A Uncharacterized protein 99.9 1.7E-20 5.9E-25 193.0 35.8 288 259-597 3-310 (331)
137 1xfd_A DIP, dipeptidyl aminope 99.9 3.3E-21 1.1E-25 220.8 31.5 343 177-547 24-444 (723)
138 4gq1_A NUP37; propeller, trans 99.9 3E-22 1E-26 211.3 21.1 254 183-545 102-388 (393)
139 2w18_A PALB2, fancn, partner a 99.9 1.1E-21 3.8E-26 194.6 22.9 270 256-624 42-351 (356)
140 3pe7_A Oligogalacturonate lyas 99.9 3.1E-21 1.1E-25 203.3 24.7 307 196-590 13-381 (388)
141 2ojh_A Uncharacterized protein 99.9 2E-20 6.8E-25 188.6 29.4 252 285-575 22-291 (297)
142 1z68_A Fibroblast activation p 99.9 3E-21 1E-25 221.0 24.8 339 217-590 19-442 (719)
143 3vgz_A Uncharacterized protein 99.9 9.1E-20 3.1E-24 189.3 32.7 278 254-575 41-333 (353)
144 1z68_A Fibroblast activation p 99.9 3.6E-20 1.2E-24 212.0 31.2 339 178-550 24-447 (719)
145 1pby_B Quinohemoprotein amine 99.9 5E-20 1.7E-24 189.7 28.5 281 226-553 2-317 (337)
146 1ri6_A Putative isomerase YBHE 99.9 1.8E-19 6.1E-24 186.1 32.4 295 185-525 8-335 (343)
147 4a5s_A Dipeptidyl peptidase 4 99.9 7.1E-20 2.4E-24 209.7 32.1 358 215-615 18-431 (740)
148 3u4y_A Uncharacterized protein 99.9 1.8E-19 6.1E-24 185.4 31.0 281 177-549 5-307 (331)
149 1ri6_A Putative isomerase YBHE 99.9 1.1E-18 3.7E-23 180.2 35.3 289 285-612 15-335 (343)
150 2ojh_A Uncharacterized protein 99.9 1.5E-19 5.3E-24 182.0 27.1 253 233-532 20-291 (297)
151 3c5m_A Oligogalacturonate lyas 99.8 8.8E-20 3E-24 192.6 21.2 325 196-589 13-380 (396)
152 3vgz_A Uncharacterized protein 99.8 3.5E-18 1.2E-22 177.2 32.2 274 214-532 41-333 (353)
153 1jmx_B Amine dehydrogenase; ox 99.8 3E-18 1E-22 177.4 31.0 283 217-552 3-331 (349)
154 4a5s_A Dipeptidyl peptidase 4 99.8 7.6E-18 2.6E-22 192.8 37.2 364 184-590 29-448 (740)
155 3o4h_A Acylamino-acid-releasin 99.8 2.6E-19 8.8E-24 199.5 24.2 276 213-591 21-315 (582)
156 3ns6_A Eukaryotic translation 99.8 2E-20 6.8E-25 153.8 8.6 95 56-152 3-97 (100)
157 3hfq_A Uncharacterized protein 99.8 3.3E-17 1.1E-21 169.7 34.4 266 235-590 17-316 (347)
158 1pby_B Quinohemoprotein amine 99.8 3.7E-18 1.3E-22 175.6 27.0 263 184-499 3-312 (337)
159 3o4h_A Acylamino-acid-releasin 99.8 1.4E-18 4.8E-23 193.5 21.8 259 255-620 23-302 (582)
160 3pe7_A Oligogalacturonate lyas 99.8 4E-18 1.4E-22 179.5 22.2 314 239-618 15-369 (388)
161 3hfq_A Uncharacterized protein 99.8 1.9E-16 6.4E-21 163.9 33.4 274 192-497 16-317 (347)
162 3scy_A Hypothetical bacterial 99.8 4E-16 1.4E-20 162.4 35.3 300 222-564 10-360 (361)
163 2nlw_A Eukaryotic translation 99.8 5.9E-19 2E-23 146.6 10.6 100 49-152 5-104 (105)
164 3scy_A Hypothetical bacterial 99.8 9.6E-16 3.3E-20 159.5 36.0 299 261-608 9-360 (361)
165 3c5m_A Oligogalacturonate lyas 99.8 7.9E-18 2.7E-22 177.6 19.7 300 256-619 38-370 (396)
166 1jof_A Carboxy-CIS,CIS-muconat 99.8 3.4E-16 1.2E-20 163.1 31.1 251 255-594 41-344 (365)
167 1jof_A Carboxy-CIS,CIS-muconat 99.8 4E-16 1.4E-20 162.6 29.7 251 214-498 40-342 (365)
168 1jmx_B Amine dehydrogenase; ox 99.8 3E-16 1E-20 162.2 27.7 273 258-596 4-331 (349)
169 2oiz_A Aromatic amine dehydrog 99.7 4.5E-16 1.5E-20 161.5 26.3 288 191-568 30-360 (361)
170 2krb_A Eukaryotic translation 99.7 7.1E-18 2.4E-22 132.8 7.1 80 59-142 1-80 (81)
171 1qks_A Cytochrome CD1 nitrite 99.7 1.4E-13 4.9E-18 149.9 42.2 327 223-594 165-541 (567)
172 4fxv_A ELAV-like protein 1; RN 99.7 4.1E-17 1.4E-21 133.2 10.3 78 58-144 18-95 (99)
173 2oit_A Nucleoporin 214KDA; NH2 99.7 6.6E-16 2.3E-20 164.3 21.3 245 214-495 37-331 (434)
174 2oiz_A Aromatic amine dehydrog 99.7 5.2E-14 1.8E-18 145.9 33.6 312 223-612 13-360 (361)
175 3azo_A Aminopeptidase; POP fam 99.7 1.5E-14 5.2E-19 163.6 27.7 259 191-483 46-354 (662)
176 3s8s_A Histone-lysine N-methyl 99.7 3E-16 1E-20 130.7 10.0 80 59-147 6-85 (110)
177 2oit_A Nucleoporin 214KDA; NH2 99.7 9.4E-15 3.2E-19 155.4 24.0 162 212-399 91-279 (434)
178 3azo_A Aminopeptidase; POP fam 99.7 1.4E-14 4.9E-19 163.8 26.7 297 207-550 17-373 (662)
179 2gop_A Trilobed protease; beta 99.7 7E-14 2.4E-18 144.4 29.4 271 215-545 16-330 (347)
180 1qks_A Cytochrome CD1 nitrite 99.7 2.6E-13 8.8E-18 148.0 35.1 342 183-555 168-547 (567)
181 2gop_A Trilobed protease; beta 99.6 5.4E-14 1.8E-18 145.3 28.3 280 254-590 15-330 (347)
182 2lxi_A RNA-binding protein 10; 99.6 1.5E-16 5E-21 127.8 6.1 78 59-145 1-80 (91)
183 2lkz_A RNA-binding protein 5; 99.6 3.2E-16 1.1E-20 126.1 7.0 78 60-146 10-93 (95)
184 2xdw_A Prolyl endopeptidase; a 99.6 3.1E-13 1.1E-17 153.8 30.9 290 222-548 80-416 (710)
185 3md1_A Nuclear and cytoplasmic 99.6 3.8E-15 1.3E-19 117.9 9.7 78 60-146 2-79 (83)
186 2wbr_A GW182, gawky, LD47780P; 99.6 2.1E-15 7.2E-20 115.5 7.5 74 58-146 6-79 (89)
187 3p5t_L Cleavage and polyadenyl 99.6 9.6E-16 3.3E-20 123.2 6.0 77 60-145 2-80 (90)
188 2x1f_A MRNA 3'-END-processing 99.6 5.2E-15 1.8E-19 120.7 10.1 80 59-147 2-81 (96)
189 3bs9_A Nucleolysin TIA-1 isofo 99.6 5.3E-15 1.8E-19 118.3 9.7 78 59-145 6-83 (87)
190 3mdf_A Peptidyl-prolyl CIS-tra 99.6 4.6E-15 1.6E-19 118.1 9.0 78 58-144 6-83 (85)
191 2xdw_A Prolyl endopeptidase; a 99.6 1.5E-12 5E-17 148.3 33.0 254 323-590 129-413 (710)
192 2dnz_A Probable RNA-binding pr 99.6 8.4E-15 2.9E-19 119.3 10.2 80 58-146 4-83 (95)
193 1s79_A Lupus LA protein; RRM, 99.6 3.9E-15 1.3E-19 122.1 7.9 78 59-147 11-88 (103)
194 1whw_A Hypothetical protein ri 99.6 8.9E-15 3E-19 120.2 9.8 81 58-147 7-87 (99)
195 4f25_A Polyadenylate-binding p 99.6 7.4E-15 2.5E-19 123.9 9.4 77 59-146 5-81 (115)
196 2cq0_A Eukaryotic translation 99.6 9.8E-15 3.3E-19 120.9 9.8 80 58-146 14-93 (103)
197 2j8a_A Histone-lysine N-methyl 99.6 4.3E-15 1.5E-19 121.7 7.0 80 59-147 2-95 (136)
198 1x5u_A Splicing factor 3B subu 99.6 1.3E-14 4.5E-19 120.6 10.1 81 57-146 13-93 (105)
199 2e5h_A Zinc finger CCHC-type a 99.6 9.6E-15 3.3E-19 118.7 8.7 78 58-144 15-92 (94)
200 1x5t_A Splicing factor 3B subu 99.6 7.6E-15 2.6E-19 119.8 8.1 80 58-146 4-84 (96)
201 2jrs_A RNA-binding protein 39; 99.6 2.5E-14 8.6E-19 118.9 11.4 79 58-145 25-103 (108)
202 2dnm_A SRP46 splicing factor; 99.6 1.3E-14 4.4E-19 120.1 9.6 80 58-146 12-91 (103)
203 2cqc_A Arginine/serine-rich sp 99.6 1.2E-14 4.2E-19 118.4 9.3 79 58-145 14-92 (95)
204 2dgs_A DAZ-associated protein 99.5 2.3E-14 7.7E-19 117.7 10.9 79 58-146 9-87 (99)
205 3n9u_C Cleavage and polyadenyl 99.5 1.1E-14 3.7E-19 129.5 9.6 79 58-145 54-134 (156)
206 1p27_B RNA-binding protein 8A; 99.5 1.9E-14 6.4E-19 119.9 10.4 79 58-145 22-100 (106)
207 2dgo_A Cytotoxic granule-assoc 99.5 4.6E-14 1.6E-18 119.4 12.7 81 58-147 14-94 (115)
208 2bkl_A Prolyl endopeptidase; m 99.5 3.9E-13 1.3E-17 152.6 24.2 289 220-549 74-400 (695)
209 2fy1_A RNA-binding motif prote 99.5 1.9E-14 6.4E-19 121.5 9.9 80 58-147 6-85 (116)
210 1x5s_A Cold-inducible RNA-bind 99.5 1.7E-14 5.9E-19 119.2 9.3 79 59-146 12-90 (102)
211 2mad_H Methylamine dehydrogena 99.5 8.6E-12 3E-16 129.3 31.9 271 193-552 48-356 (373)
212 3fvz_A Peptidyl-glycine alpha- 99.5 1.9E-12 6.4E-17 132.5 26.6 258 255-592 25-323 (329)
213 2la6_A RNA-binding protein FUS 99.5 2.5E-14 8.7E-19 117.3 10.1 82 56-144 10-97 (99)
214 2cqb_A Peptidyl-prolyl CIS-tra 99.5 9.7E-15 3.3E-19 120.7 7.6 80 58-146 11-90 (102)
215 1x4h_A RNA-binding protein 28; 99.5 3.4E-14 1.1E-18 119.5 11.1 81 58-147 14-100 (111)
216 2dgp_A Bruno-like 4, RNA bindi 99.5 2.2E-14 7.6E-19 119.4 9.8 80 58-146 12-94 (106)
217 3s7r_A Heterogeneous nuclear r 99.5 2.5E-14 8.6E-19 114.3 9.7 77 58-144 10-86 (87)
218 2div_A TRNA selenocysteine ass 99.5 1.2E-14 4.2E-19 119.3 8.0 79 58-144 8-90 (99)
219 2cpz_A CUG triplet repeat RNA- 99.5 2.4E-14 8.1E-19 121.2 10.0 80 58-146 24-103 (115)
220 2do4_A Squamous cell carcinoma 99.5 2.4E-14 8.1E-19 117.8 9.7 79 58-146 16-94 (100)
221 3sjl_D Methylamine dehydrogena 99.5 9.4E-13 3.2E-17 134.4 23.6 300 176-566 39-384 (386)
222 2mss_A Protein (musashi1); RNA 99.5 7.1E-15 2.4E-19 113.7 6.1 73 61-143 1-73 (75)
223 2dg1_A DRP35, lactonase; beta 99.5 7.7E-12 2.7E-16 128.2 30.8 285 214-545 6-315 (333)
224 1oo0_B CG8781-PA, drosophila Y 99.5 2.7E-14 9.2E-19 119.8 10.0 79 58-145 25-103 (110)
225 1x4e_A RNA binding motif, sing 99.5 7.1E-15 2.4E-19 116.9 5.8 72 58-137 4-75 (85)
226 2dnh_A Bruno-like 5, RNA bindi 99.5 4.1E-14 1.4E-18 117.6 10.5 80 58-146 14-95 (105)
227 4a8x_A RNA-binding protein wit 99.5 1.9E-14 6.4E-19 115.4 8.1 78 59-145 4-82 (88)
228 3ucg_A Polyadenylate-binding p 99.5 2.3E-14 7.8E-19 115.2 8.4 77 59-145 6-82 (89)
229 2cpf_A RNA binding motif prote 99.5 2.4E-14 8.2E-19 117.3 8.5 79 59-146 5-86 (98)
230 3ulh_A THO complex subunit 4; 99.5 3.3E-14 1.1E-18 118.6 9.5 78 58-145 28-105 (107)
231 2a3j_A U1 small nuclear ribonu 99.5 3.1E-14 1.1E-18 121.1 9.3 79 59-146 29-108 (127)
232 2cph_A RNA binding motif prote 99.5 5.7E-14 2E-18 117.2 10.8 80 58-146 14-95 (107)
233 2ywk_A Putative RNA-binding pr 99.5 3E-14 1E-18 116.0 8.9 78 58-145 15-92 (95)
234 2cpe_A RNA-binding protein EWS 99.5 4.8E-14 1.6E-18 118.9 10.3 80 58-146 14-101 (113)
235 2ek1_A RNA-binding protein 12; 99.5 1.4E-14 4.6E-19 118.1 6.6 78 59-145 15-92 (95)
236 2kxn_B Transformer-2 protein h 99.5 2.9E-14 9.8E-19 122.6 8.8 79 58-145 45-123 (129)
237 1p1t_A Cleavage stimulation fa 99.5 2.1E-14 7E-19 119.2 7.6 79 59-146 8-86 (104)
238 2khc_A Testis-specific RNP-typ 99.5 2.7E-14 9.2E-19 121.5 8.5 78 58-144 39-116 (118)
239 2bkl_A Prolyl endopeptidase; m 99.5 6.7E-13 2.3E-17 150.6 22.6 256 211-499 118-399 (695)
240 1uaw_A Mouse-musashi-1; RNP-ty 99.5 1.1E-14 3.7E-19 113.4 5.2 75 60-144 1-75 (77)
241 2cqp_A RNA-binding protein 12; 99.5 1.6E-14 5.6E-19 118.3 6.4 79 58-145 14-92 (98)
242 2dgx_A KIAA0430 protein; RRM d 99.5 4.9E-14 1.7E-18 114.6 8.6 75 59-145 9-87 (96)
243 2dg1_A DRP35, lactonase; beta 99.5 8.5E-12 2.9E-16 127.9 27.7 277 253-575 5-299 (333)
244 1u6f_A Tcubp1, RNA-binding pro 99.5 7E-14 2.4E-18 122.8 10.2 80 58-146 41-120 (139)
245 3dsm_A Uncharacterized protein 99.5 9.5E-12 3.3E-16 127.1 27.6 271 235-608 18-320 (328)
246 2j76_E EIF-4B, EIF4B, eukaryot 99.5 2.3E-14 7.7E-19 117.7 6.4 80 55-145 15-95 (100)
247 2m2b_A RNA-binding protein 10; 99.5 4.1E-14 1.4E-18 122.6 8.3 82 58-147 22-107 (131)
248 2cq4_A RNA binding motif prote 99.5 4E-14 1.4E-18 119.5 8.1 80 58-147 24-103 (114)
249 2do0_A HnRNP M, heterogeneous 99.5 1.8E-13 6.2E-18 115.6 12.2 79 58-146 14-92 (114)
250 2d9p_A Polyadenylate-binding p 99.5 8.1E-14 2.8E-18 115.3 9.8 78 58-146 14-91 (103)
251 2dng_A Eukaryotic translation 99.5 7.4E-14 2.5E-18 115.4 9.5 78 58-146 14-91 (103)
252 1wi8_A EIF-4B, eukaryotic tran 99.5 5.8E-14 2E-18 116.3 8.7 78 58-146 14-92 (104)
253 3ex7_B RNA-binding protein 8A; 99.5 7.3E-14 2.5E-18 120.4 9.6 79 58-145 21-99 (126)
254 1sjq_A Polypyrimidine tract-bi 99.5 4.6E-14 1.6E-18 114.2 7.7 73 58-145 15-89 (105)
255 1h2v_Z 20 kDa nuclear CAP bind 99.5 1.1E-13 3.6E-18 124.3 10.9 81 57-146 37-117 (156)
256 2ki2_A SS-DNA binding protein 99.5 1E-14 3.5E-19 117.4 3.8 76 60-145 2-77 (90)
257 1q7f_A NHL, brain tumor CG1071 99.5 2.9E-11 9.8E-16 121.0 30.0 236 255-590 31-279 (286)
258 2kt5_A RNA and export factor-b 99.5 2.7E-13 9.2E-18 116.3 12.9 80 57-146 33-112 (124)
259 2dhg_A TRNA selenocysteine ass 99.5 5.2E-14 1.8E-18 116.7 8.0 78 58-145 8-87 (104)
260 2rs2_A Musashi-1, RNA-binding 99.5 6.2E-14 2.1E-18 116.9 8.4 79 58-146 24-102 (109)
261 1wez_A HnRNP H', FTP-3, hetero 99.5 3.9E-14 1.3E-18 116.2 6.8 77 58-146 14-90 (102)
262 1yr2_A Prolyl oligopeptidase; 99.5 2.2E-11 7.4E-16 139.2 32.1 289 221-549 114-444 (741)
263 3r27_A HnRNP L, heterogeneous 99.5 1.2E-13 3.9E-18 110.6 9.1 74 58-146 20-95 (100)
264 3sjl_D Methylamine dehydrogena 99.5 1.8E-11 6.1E-16 125.0 27.6 296 259-610 38-384 (386)
265 2dgv_A HnRNP M, heterogeneous 99.5 9.9E-14 3.4E-18 112.1 8.8 76 58-144 7-82 (92)
266 3c75_H MADH, methylamine dehyd 99.5 1.2E-11 4E-16 128.8 26.5 306 223-566 82-423 (426)
267 2hgl_A HNRPF protein, heteroge 99.5 5.5E-14 1.9E-18 121.0 7.5 78 58-146 43-123 (136)
268 2cpi_A CCR4-NOT transcription 99.5 5.3E-14 1.8E-18 117.9 6.9 80 58-146 14-99 (111)
269 1iqt_A AUF1, heterogeneous nuc 99.5 2.2E-14 7.6E-19 110.9 4.3 73 61-143 1-73 (75)
270 2cqd_A RNA-binding region cont 99.5 1.2E-13 4E-18 117.1 9.1 79 58-146 16-94 (116)
271 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 1.1E-13 3.8E-18 121.9 9.2 78 58-144 62-139 (140)
272 1q7f_A NHL, brain tumor CG1071 99.5 2.3E-11 8E-16 121.6 27.4 237 210-546 26-280 (286)
273 2dh8_A DAZ-associated protein 99.5 6.3E-14 2.2E-18 116.4 7.1 78 58-145 15-92 (105)
274 3e5z_A Putative gluconolactona 99.5 3E-11 1E-15 121.5 28.1 245 210-551 24-291 (296)
275 2cpy_A RNA-binding protein 12; 99.5 5.9E-14 2E-18 118.2 6.7 78 59-147 15-93 (114)
276 2dis_A Unnamed protein product 99.5 9.7E-14 3.3E-18 116.2 8.0 79 59-146 8-90 (109)
277 2cqg_A TDP-43, TAR DNA-binding 99.5 2.9E-13 9.9E-18 111.9 10.7 79 58-147 14-92 (103)
278 2pe8_A Splicing factor 45; RRM 99.5 3E-13 1E-17 111.0 10.6 86 58-147 7-93 (105)
279 2cqi_A Nucleolysin TIAR; RNA r 99.5 2.8E-13 9.7E-18 112.0 10.5 79 58-147 14-92 (103)
280 1x4b_A Heterogeneous nuclear r 99.5 1.3E-13 4.4E-18 116.8 8.5 80 58-147 26-105 (116)
281 2mad_H Methylamine dehydrogena 99.5 2.1E-10 7.1E-15 118.8 34.2 284 259-596 26-356 (373)
282 2lea_A Serine/arginine-rich sp 99.5 7.2E-14 2.5E-18 121.2 6.8 79 58-145 46-124 (135)
283 2dgw_A Probable RNA-binding pr 99.5 2.8E-13 9.5E-18 109.1 9.8 77 58-146 9-85 (91)
284 2db1_A Heterogeneous nuclear r 99.5 1.2E-13 4.1E-18 116.9 8.0 79 58-147 16-97 (118)
285 2jwn_A Embryonic polyadenylate 99.5 1.1E-13 3.8E-18 118.9 7.8 77 59-145 36-112 (124)
286 2kn4_A Immunoglobulin G-bindin 99.5 2.4E-13 8.1E-18 122.5 10.4 80 58-146 69-148 (158)
287 2err_A Ataxin-2-binding protei 99.4 1.7E-13 5.8E-18 114.2 8.7 77 58-145 28-104 (109)
288 2dnn_A RNA-binding protein 12; 99.4 1.2E-13 4E-18 114.1 7.5 77 59-147 16-92 (109)
289 1rk8_A CG8781-PA, CG8781-PA pr 99.4 1.9E-13 6.5E-18 123.6 9.5 79 58-145 71-149 (165)
290 1x5o_A RNA binding motif, sing 99.4 5.4E-13 1.9E-17 112.6 11.4 70 58-136 24-93 (114)
291 1yr2_A Prolyl oligopeptidase; 99.4 2.6E-11 9E-16 138.5 29.1 252 323-591 167-441 (741)
292 2cq3_A RNA-binding protein 9; 99.4 6.3E-13 2.1E-17 109.9 11.4 78 58-146 14-91 (103)
293 1wg5_A Heterogeneous nuclear r 99.4 2.7E-13 9.2E-18 112.0 8.9 78 58-145 14-91 (104)
294 3e5z_A Putative gluconolactona 99.4 7.4E-11 2.5E-15 118.6 28.8 254 255-597 29-292 (296)
295 3q2s_C Cleavage and polyadenyl 99.4 1.3E-13 4.4E-18 131.3 7.7 80 58-146 67-148 (229)
296 2lmi_A GRSF-1, G-rich sequence 99.4 9.1E-14 3.1E-18 115.5 5.9 79 57-146 9-90 (107)
297 2dha_A FLJ20171 protein; RRM d 99.4 9.8E-14 3.3E-18 117.2 6.0 79 57-146 21-103 (123)
298 2ad9_A Polypyrimidine tract-bi 99.4 2.9E-13 9.8E-18 112.7 8.3 73 58-145 30-104 (119)
299 1x4d_A Matrin 3; structural ge 99.4 2.9E-13 9.9E-18 109.8 8.0 79 58-151 14-95 (102)
300 3c75_H MADH, methylamine dehyd 99.4 4.3E-11 1.5E-15 124.5 26.5 296 263-610 82-423 (426)
301 2cq1_A PTB-like protein L; RRM 99.4 4.6E-13 1.6E-17 108.8 9.1 74 58-146 14-89 (101)
302 1wel_A RNA-binding protein 12; 99.4 1.9E-13 6.6E-18 117.1 7.3 80 58-147 24-103 (124)
303 2jvr_A Nucleolar protein 3; RN 99.4 2.1E-13 7.3E-18 112.7 7.1 75 58-145 27-102 (111)
304 3v4m_A Splicing factor U2AF 65 99.4 6.4E-13 2.2E-17 109.1 9.8 86 59-147 5-96 (105)
305 3dsm_A Uncharacterized protein 99.4 9.8E-11 3.4E-15 119.5 28.3 278 184-553 4-308 (328)
306 3fvz_A Peptidyl-glycine alpha- 99.4 3.9E-11 1.3E-15 122.7 25.3 246 214-546 24-322 (329)
307 1x4a_A Splicing factor, argini 99.4 1.2E-12 3.9E-17 109.5 10.9 77 58-146 21-97 (109)
308 2xs2_A Deleted in azoospermia- 99.4 1.5E-13 5.1E-18 113.5 5.3 76 59-146 9-84 (102)
309 1x4f_A Matrin 3; structural ge 99.4 2.9E-13 9.8E-18 111.3 6.7 78 56-148 22-102 (112)
310 2diu_A KIAA0430 protein; struc 99.4 6.3E-13 2.1E-17 102.7 8.0 71 61-147 11-83 (96)
311 2f3j_A RNA and export factor b 99.4 5E-13 1.7E-17 121.6 8.9 80 57-146 86-165 (177)
312 3lqv_A PRE-mRNA branch site pr 99.4 8.3E-13 2.8E-17 111.6 9.7 79 57-147 6-84 (115)
313 1wex_A Hypothetical protein (r 99.4 5.7E-13 1.9E-17 109.1 8.1 73 59-146 15-89 (104)
314 2cq2_A Hypothetical protein LO 99.4 5.3E-13 1.8E-17 109.7 7.8 75 58-146 24-104 (114)
315 2fc9_A NCL protein; structure 99.4 1.1E-12 3.7E-17 108.0 9.7 77 58-147 14-90 (101)
316 2fc8_A NCL protein; structure 99.4 7.9E-13 2.7E-17 109.1 8.8 78 57-146 13-90 (102)
317 2cpx_A Hypothetical protein FL 99.4 4.4E-13 1.5E-17 113.4 7.4 80 58-146 24-103 (115)
318 1whx_A Hypothetical protein ri 99.4 5.5E-13 1.9E-17 111.4 7.8 73 59-146 10-82 (111)
319 2hgm_A HNRPF protein, heteroge 99.4 4E-13 1.4E-17 113.6 6.4 78 58-145 41-118 (126)
320 1x4c_A Splicing factor, argini 99.4 1.2E-12 4.1E-17 109.0 9.3 74 58-147 14-92 (108)
321 2hgn_A Heterogeneous nuclear r 99.4 1.4E-13 4.8E-18 118.9 3.6 75 58-144 45-119 (139)
322 1fj7_A Nucleolin RBD1, protein 99.4 1.7E-13 6E-18 112.8 3.7 78 58-146 16-93 (101)
323 4f02_A Polyadenylate-binding p 99.4 1.2E-12 4E-17 124.3 9.9 77 59-144 15-91 (213)
324 2hvz_A Splicing factor, argini 99.4 1.1E-12 3.9E-17 107.9 8.5 74 60-147 1-74 (101)
325 1x4g_A Nucleolysin TIAR; struc 99.4 1.8E-12 6.3E-17 108.2 9.3 77 56-147 22-98 (109)
326 1nu4_A U1A RNA binding domain; 99.4 6.9E-13 2.4E-17 108.3 6.5 77 58-146 7-87 (97)
327 1why_A Hypothetical protein ri 99.4 1.8E-12 6.1E-17 105.7 8.5 74 59-146 17-91 (97)
328 2dnq_A RNA-binding protein 4B; 99.4 2.6E-12 8.8E-17 103.1 9.3 71 59-146 8-78 (90)
329 3ue2_A Poly(U)-binding-splicin 99.4 1.8E-12 6.2E-17 108.4 8.6 86 58-147 19-108 (118)
330 3no2_A Uncharacterized protein 99.4 2.2E-10 7.6E-15 113.4 25.3 218 263-574 3-231 (276)
331 2lcw_A RNA-binding protein FUS 99.0 8.5E-14 2.9E-18 117.9 0.0 82 58-146 6-93 (116)
332 2xnq_A Nuclear polyadenylated 99.3 4.7E-12 1.6E-16 102.9 10.3 73 56-145 19-92 (97)
333 1fjc_A Nucleolin RBD2, protein 99.3 1.3E-12 4.5E-17 106.4 7.0 75 58-146 15-89 (96)
334 2cpj_A Non-POU domain-containi 99.3 1.9E-12 6.6E-17 106.0 8.0 75 58-147 14-88 (99)
335 2e5j_A Methenyltetrahydrofolat 99.3 2.4E-12 8.2E-17 104.9 8.4 78 55-146 15-92 (97)
336 2jvo_A Nucleolar protein 3; nu 99.3 2.6E-12 8.9E-17 106.6 8.6 71 58-145 30-100 (108)
337 1rwi_B Serine/threonine-protei 99.3 2.2E-10 7.5E-15 113.3 24.4 238 255-593 25-266 (270)
338 2z2n_A Virginiamycin B lyase; 99.3 5E-09 1.7E-13 105.0 34.8 275 211-547 12-296 (299)
339 2la4_A Nuclear and cytoplasmic 99.3 1.5E-12 5.2E-17 107.1 7.0 72 58-144 26-97 (101)
340 2dit_A HIV TAT specific factor 99.3 6.1E-12 2.1E-16 105.4 10.6 87 58-151 14-105 (112)
341 1sjr_A Polypyrimidine tract-bi 99.3 5.5E-12 1.9E-16 110.4 10.5 75 60-146 47-122 (164)
342 1fxl_A Paraneoplastic encephal 99.3 3.9E-12 1.3E-16 115.9 10.0 78 59-145 2-79 (167)
343 2ytc_A PRE-mRNA-splicing facto 99.3 3.8E-12 1.3E-16 101.0 8.2 72 58-144 11-83 (85)
344 3pgw_S U1-70K; protein-RNA com 99.3 3.5E-12 1.2E-16 133.4 10.3 80 58-146 101-180 (437)
345 1b7f_A Protein (SXL-lethal pro 99.3 3.4E-12 1.2E-16 116.4 9.0 78 59-145 3-80 (168)
346 2dnl_A Cytoplasmic polyadenyla 99.3 1.7E-12 6E-17 109.1 5.9 74 58-143 7-83 (114)
347 1rwi_B Serine/threonine-protei 99.3 4.8E-10 1.6E-14 110.8 24.6 236 215-549 25-267 (270)
348 2dnp_A RNA-binding protein 14; 99.3 4.3E-12 1.5E-16 101.8 7.8 72 58-146 8-79 (90)
349 3md3_A Nuclear and cytoplasmic 99.3 7.6E-12 2.6E-16 113.9 10.4 79 58-145 86-164 (166)
350 2i2y_A Fusion protein consists 99.3 5.2E-12 1.8E-16 112.3 9.1 75 57-145 71-145 (150)
351 2g4b_A Splicing factor U2AF 65 99.3 3.7E-12 1.3E-16 116.7 8.3 77 59-144 94-170 (172)
352 3zzy_A Polypyrimidine tract-bi 99.3 6.6E-12 2.2E-16 105.7 9.0 73 60-145 29-103 (130)
353 3egn_A RNA-binding protein 40; 99.3 6.8E-13 2.3E-17 117.0 3.1 79 58-145 44-127 (143)
354 1wg1_A KIAA1579 protein, homol 99.3 3.9E-12 1.3E-16 101.4 7.3 72 58-145 4-75 (88)
355 2dgu_A Heterogeneous nuclear r 99.3 1.1E-11 3.6E-16 102.3 10.1 72 59-147 11-82 (103)
356 2kvi_A Nuclear polyadenylated 99.3 6.3E-12 2.1E-16 102.1 8.3 71 58-145 9-80 (96)
357 3beg_B Splicing factor, argini 99.3 2.9E-12 9.8E-17 107.9 6.4 65 58-137 15-79 (115)
358 2z2n_A Virginiamycin B lyase; 99.3 1.5E-08 5E-13 101.5 35.1 270 254-591 15-295 (299)
359 2cpd_A Apobec-1 stimulating pr 99.3 1.4E-11 4.9E-16 100.8 10.3 72 58-146 14-87 (99)
360 3d2w_A TAR DNA-binding protein 99.3 9.5E-12 3.3E-16 99.0 8.9 71 58-145 10-81 (89)
361 2hzc_A Splicing factor U2AF 65 99.3 4.8E-12 1.6E-16 100.9 7.1 71 58-144 5-86 (87)
362 2voo_A Lupus LA protein; RNA-b 99.3 6.3E-12 2.2E-16 116.2 8.8 79 58-147 108-186 (193)
363 2e5i_A Heterogeneous nuclear r 99.3 1.1E-11 3.9E-16 104.0 9.4 71 61-145 27-99 (124)
364 2dgt_A RNA-binding protein 30; 99.3 1.3E-11 4.6E-16 99.4 9.5 72 58-146 9-80 (92)
365 1xip_A Nucleoporin NUP159; bet 99.3 4.4E-10 1.5E-14 115.3 23.1 176 215-430 39-234 (388)
366 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 3.7E-09 1.3E-13 106.9 30.0 240 254-590 18-298 (314)
367 2e5g_A U6 snRNA-specific termi 99.3 8.5E-12 2.9E-16 100.9 8.1 71 59-144 8-78 (94)
368 1wf1_A RNA-binding protein RAL 99.3 8.9E-12 3E-16 104.2 8.4 71 58-145 26-97 (110)
369 2e44_A Insulin-like growth fac 99.3 5.4E-12 1.8E-16 102.7 6.7 77 58-147 14-91 (96)
370 2qfj_A FBP-interacting repress 99.3 1.5E-11 5.1E-16 117.3 10.9 80 57-145 123-202 (216)
371 1jmt_A Splicing factor U2AF 35 99.3 9E-12 3.1E-16 102.1 7.9 66 75-144 36-102 (104)
372 1x5p_A Negative elongation fac 99.3 3.6E-11 1.2E-15 97.8 11.5 72 58-146 14-85 (97)
373 2qfj_A FBP-interacting repress 99.3 9.5E-12 3.3E-16 118.7 9.2 79 58-145 27-105 (216)
374 1fxl_A Paraneoplastic encephal 99.3 1.6E-11 5.5E-16 111.8 10.2 78 58-143 87-165 (167)
375 1b7f_A Protein (SXL-lethal pro 99.3 1.8E-11 6.2E-16 111.5 10.5 79 57-143 87-166 (168)
376 2cjk_A Nuclear polyadenylated 99.2 6.9E-12 2.4E-16 114.2 7.1 78 58-145 86-163 (167)
377 2cqh_A IGF-II mRNA-binding pro 99.2 6E-12 2E-16 101.7 5.9 73 58-146 7-81 (93)
378 2yh0_A Splicing factor U2AF 65 99.2 1.2E-11 4E-16 116.3 8.8 81 57-146 112-192 (198)
379 1l3k_A Heterogeneous nuclear r 99.2 1.3E-11 4.6E-16 115.7 9.2 78 58-145 12-89 (196)
380 3iuj_A Prolyl endopeptidase; h 99.2 4.5E-10 1.5E-14 127.1 23.3 254 255-549 130-408 (693)
381 3nmr_A Cugbp ELAV-like family 99.2 1.8E-11 6.3E-16 112.4 9.6 78 58-144 94-173 (175)
382 4f02_A Polyadenylate-binding p 99.2 1.6E-11 5.4E-16 116.5 9.2 79 58-147 102-180 (213)
383 3md3_A Nuclear and cytoplasmic 99.2 1.5E-11 5E-16 111.9 8.4 76 60-145 1-76 (166)
384 3tyt_A Heterogeneous nuclear r 99.2 1.8E-11 6.1E-16 114.6 8.8 74 59-146 4-78 (205)
385 3iuj_A Prolyl endopeptidase; h 99.2 1.2E-09 4.1E-14 123.6 25.2 251 323-591 133-405 (693)
386 3nmr_A Cugbp ELAV-like family 99.2 2.1E-11 7.4E-16 111.9 8.3 69 59-135 3-73 (175)
387 1l3k_A Heterogeneous nuclear r 99.2 2.9E-11 9.9E-16 113.4 9.1 79 58-146 103-181 (196)
388 2bz2_A Negative elongation fac 99.2 4.2E-11 1.4E-15 101.4 8.9 72 58-146 38-109 (121)
389 2cjk_A Nuclear polyadenylated 99.2 1.6E-11 5.6E-16 111.8 6.3 74 59-143 3-76 (167)
390 1mda_H Methylamine dehydrogena 99.2 1.4E-09 4.9E-14 111.3 20.9 287 235-609 47-366 (368)
391 3s6e_A RNA-binding protein 39; 99.2 5.5E-11 1.9E-15 98.5 8.4 82 59-147 7-92 (114)
392 1mda_H Methylamine dehydrogena 99.2 1.9E-09 6.5E-14 110.3 21.3 288 184-565 34-366 (368)
393 2qc5_A Streptogramin B lactona 99.2 1.5E-07 5.2E-12 94.1 35.3 257 254-571 20-287 (300)
394 3no2_A Uncharacterized protein 99.2 8E-09 2.7E-13 102.2 25.2 187 185-403 8-200 (276)
395 2ece_A 462AA long hypothetical 99.2 4E-08 1.4E-12 100.8 30.6 235 328-574 93-399 (462)
396 3g4e_A Regucalcin; six bladed 99.2 2.9E-08 9.9E-13 99.6 29.4 232 323-575 17-261 (297)
397 1pjx_A Dfpase, DIISOPROPYLFLUO 99.2 4.2E-08 1.4E-12 99.1 30.5 245 214-546 18-299 (314)
398 2qc5_A Streptogramin B lactona 99.1 1.3E-07 4.3E-12 94.7 33.7 269 213-544 19-298 (300)
399 3g4e_A Regucalcin; six bladed 99.1 2.5E-08 8.4E-13 100.1 28.1 230 217-532 16-261 (297)
400 3u1l_A PRE-mRNA-splicing facto 99.1 1.1E-10 3.9E-15 109.8 9.4 79 58-145 133-226 (240)
401 1wf0_A TDP-43, TAR DNA-binding 99.1 3.5E-11 1.2E-15 96.0 4.7 70 58-145 4-75 (88)
402 1fwx_A Nitrous oxide reductase 99.1 5E-09 1.7E-13 111.4 21.4 284 263-612 99-456 (595)
403 3hrp_A Uncharacterized protein 99.1 4.7E-08 1.6E-12 102.6 28.3 235 254-544 131-408 (409)
404 3smz_A Protein raver-1, ribonu 99.1 2.7E-10 9.2E-15 113.6 10.1 79 58-145 94-172 (284)
405 2ece_A 462AA long hypothetical 99.1 2.6E-07 8.9E-12 94.8 31.9 248 258-531 86-399 (462)
406 3tyt_A Heterogeneous nuclear r 99.1 1.2E-10 4E-15 109.1 6.6 69 59-137 123-193 (205)
407 3dr2_A Exported gluconolactona 99.1 4.5E-08 1.5E-12 98.6 26.3 228 216-485 47-298 (305)
408 3pgw_A U1-A; protein-RNA compl 99.1 3.5E-10 1.2E-14 112.6 10.4 80 58-146 8-88 (282)
409 3smz_A Protein raver-1, ribonu 99.1 2.4E-10 8.2E-15 113.9 9.0 80 57-146 182-262 (284)
410 1fje_B Nucleolin RBD12, protei 99.1 2.2E-10 7.5E-15 105.1 8.0 74 58-145 98-171 (175)
411 3tht_A Alkylated DNA repair pr 99.1 3E-10 1E-14 113.1 9.0 80 53-146 12-97 (345)
412 2ghp_A U4/U6 snRNA-associated 99.0 2.2E-10 7.6E-15 114.7 8.0 80 57-146 208-289 (292)
413 3dr2_A Exported gluconolactona 99.0 5E-08 1.7E-12 98.2 25.5 232 323-575 49-296 (305)
414 3sde_A Paraspeckle component 1 99.0 3E-10 1E-14 111.3 8.6 81 58-148 95-179 (261)
415 2adc_A Polypyrimidine tract-bi 99.0 6.7E-10 2.3E-14 106.5 9.5 77 56-146 31-108 (229)
416 1xip_A Nucleoporin NUP159; bet 99.0 6.5E-09 2.2E-13 106.6 17.0 166 413-616 41-230 (388)
417 3hrp_A Uncharacterized protein 99.0 1.1E-07 3.7E-12 99.8 26.2 233 323-589 135-408 (409)
418 1fje_B Nucleolin RBD12, protei 99.0 1.9E-10 6.4E-15 105.5 4.2 78 58-146 12-89 (175)
419 2ghs_A AGR_C_1268P; regucalcin 99.0 5E-07 1.7E-11 91.8 29.7 230 256-532 51-291 (326)
420 1qm9_A Polypyrimidine tract-bi 99.0 6.7E-10 2.3E-14 104.1 7.2 74 59-146 3-77 (198)
421 2d9o_A DNAJ (HSP40) homolog, s 99.0 1.4E-09 4.9E-14 87.6 7.8 60 76-145 28-87 (100)
422 3pgw_A U1-A; protein-RNA compl 99.0 1.6E-09 5.4E-14 107.8 9.8 75 58-145 206-280 (282)
423 2ghp_A U4/U6 snRNA-associated 98.9 1E-09 3.5E-14 109.8 8.0 78 58-145 116-194 (292)
424 2qe8_A Uncharacterized protein 98.9 4.6E-08 1.6E-12 100.3 19.8 261 214-532 17-310 (343)
425 2qe8_A Uncharacterized protein 98.9 3.4E-07 1.2E-11 93.8 25.9 278 245-575 9-310 (343)
426 3sde_A Paraspeckle component 1 98.9 2.2E-09 7.5E-14 105.1 9.0 73 58-145 21-93 (261)
427 2ghs_A AGR_C_1268P; regucalcin 98.9 1.9E-07 6.5E-12 94.9 23.5 222 176-431 55-293 (326)
428 2yh0_A Splicing factor U2AF 65 98.9 2.5E-10 8.4E-15 107.2 1.7 80 58-147 3-87 (198)
429 1fwx_A Nitrous oxide reductase 98.9 2.7E-07 9.2E-12 98.2 23.6 268 223-548 99-433 (595)
430 1qm9_A Polypyrimidine tract-bi 98.9 3.6E-09 1.2E-13 99.1 7.6 73 59-144 120-193 (198)
431 2g4b_A Splicing factor U2AF 65 98.8 5E-09 1.7E-13 95.6 7.6 70 59-144 4-84 (172)
432 2adc_A Polypyrimidine tract-bi 98.8 8.8E-09 3E-13 98.7 9.1 74 59-145 151-225 (229)
433 2iwa_A Glutamine cyclotransfer 98.8 8.1E-07 2.8E-11 85.7 22.6 209 245-547 9-238 (266)
434 2dnr_A Synaptojanin-1; RRM dom 98.8 2.1E-08 7.3E-13 76.8 8.2 76 59-146 7-84 (91)
435 1owx_A Lupus LA protein, SS-B, 98.7 3.1E-08 1.1E-12 81.7 8.6 75 58-146 17-94 (121)
436 1kb0_A Quinohemoprotein alcoho 98.7 1.3E-06 4.6E-11 97.7 24.7 74 537-615 457-535 (677)
437 1ufw_A Synaptojanin 2; RNP dom 98.7 3.3E-08 1.1E-12 76.0 6.7 76 59-146 15-93 (95)
438 1npe_A Nidogen, entactin; glyc 98.7 2.5E-05 8.4E-10 76.6 29.6 252 332-612 2-263 (267)
439 3nol_A Glutamine cyclotransfer 98.7 2.5E-06 8.5E-11 81.2 20.8 126 245-404 31-161 (262)
440 1yiq_A Quinohemoprotein alcoho 98.7 4.3E-06 1.5E-10 93.8 26.5 78 489-575 456-538 (689)
441 3q7m_A Lipoprotein YFGL, BAMB; 98.7 1.6E-05 5.4E-10 82.4 28.9 290 225-588 53-375 (376)
442 1npe_A Nidogen, entactin; glyc 98.6 4.6E-05 1.6E-09 74.6 29.8 249 225-525 1-263 (267)
443 3dxb_A Thioredoxin N-terminall 98.6 1E-07 3.5E-12 90.7 10.0 84 59-146 124-211 (222)
444 2xe4_A Oligopeptidase B; hydro 98.6 4.2E-06 1.4E-10 95.1 24.3 165 211-398 170-354 (751)
445 2iwa_A Glutamine cyclotransfer 98.6 5.1E-06 1.8E-10 80.1 21.0 180 217-432 24-228 (266)
446 1kb0_A Quinohemoprotein alcoho 98.6 2.6E-05 8.7E-10 87.3 29.0 306 224-572 127-536 (677)
447 2xe4_A Oligopeptidase B; hydro 98.6 7.5E-06 2.6E-10 93.0 24.9 255 255-548 175-460 (751)
448 3mbr_X Glutamine cyclotransfer 98.6 1.6E-05 5.4E-10 75.0 22.4 126 245-404 9-139 (243)
449 3hxj_A Pyrrolo-quinoline quino 98.5 5.8E-06 2E-10 83.8 21.1 264 212-545 58-323 (330)
450 4a2l_A BT_4663, two-component 98.5 0.0011 3.6E-08 76.2 41.1 340 216-615 175-558 (795)
451 4a2l_A BT_4663, two-component 98.5 0.0008 2.7E-08 77.1 39.5 344 213-616 214-602 (795)
452 3nok_A Glutaminyl cyclase; bet 98.5 1E-05 3.5E-10 76.9 19.4 124 246-404 44-170 (268)
453 3hxj_A Pyrrolo-quinoline quino 98.5 1.8E-05 6.3E-10 80.1 22.4 295 217-590 23-323 (330)
454 1yiq_A Quinohemoprotein alcoho 98.4 2.6E-05 8.8E-10 87.5 24.8 317 265-613 70-531 (689)
455 3nol_A Glutamine cyclotransfer 98.4 3E-05 1E-09 73.8 20.8 180 217-432 46-247 (262)
456 2p4o_A Hypothetical protein; p 98.3 0.00096 3.3E-08 66.6 29.5 223 323-575 36-277 (306)
457 3nok_A Glutaminyl cyclase; bet 98.3 9.4E-05 3.2E-09 70.3 19.9 179 217-432 58-257 (268)
458 2hz6_A Endoplasmic reticulum t 98.2 1.3E-06 4.4E-11 90.3 7.5 202 264-569 8-217 (369)
459 3mbr_X Glutamine cyclotransfer 98.2 0.00031 1E-08 66.2 22.4 180 217-432 24-226 (243)
460 3v9f_A Two-component system se 98.2 0.0022 7.5E-08 73.3 33.1 343 214-615 163-554 (781)
461 2p4o_A Hypothetical protein; p 98.2 0.00093 3.2E-08 66.7 26.5 228 216-485 34-279 (306)
462 3q7m_A Lipoprotein YFGL, BAMB; 98.1 0.0016 5.5E-08 67.1 27.4 284 264-597 52-344 (376)
463 3v9f_A Two-component system se 98.1 0.009 3.1E-07 68.2 35.7 343 214-615 211-598 (781)
464 3v65_B Low-density lipoprotein 98.1 0.0046 1.6E-07 63.9 30.1 224 286-550 97-322 (386)
465 2hz6_A Endoplasmic reticulum t 98.0 2.7E-06 9.1E-11 87.9 4.9 178 183-402 10-196 (369)
466 3v65_B Low-density lipoprotein 98.0 0.0073 2.5E-07 62.3 30.9 236 217-497 80-318 (386)
467 1kv9_A Type II quinohemoprotei 98.0 0.0012 4.2E-08 73.6 26.5 308 225-575 117-521 (668)
468 1k3i_A Galactose oxidase precu 98.0 0.00079 2.7E-08 75.2 24.7 295 257-575 189-530 (656)
469 3v64_C Agrin; beta propeller, 98.0 0.0095 3.3E-07 60.5 30.3 241 256-549 36-278 (349)
470 3v64_C Agrin; beta propeller, 98.0 0.019 6.5E-07 58.2 32.5 235 216-495 36-273 (349)
471 3s94_A LRP-6, low-density lipo 98.0 0.038 1.3E-06 60.7 40.6 369 175-593 89-512 (619)
472 3qqz_A Putative uncharacterize 98.0 0.0039 1.3E-07 59.6 24.9 195 255-494 28-250 (255)
473 2ad6_A Methanol dehydrogenase 97.9 0.0052 1.8E-07 67.0 27.7 77 489-574 445-525 (571)
474 2fp8_A Strictosidine synthase; 97.9 0.011 3.8E-07 59.2 28.4 251 255-545 20-312 (322)
475 1k3i_A Galactose oxidase precu 97.9 0.002 6.9E-08 71.9 25.0 278 218-532 190-530 (656)
476 3qqz_A Putative uncharacterize 97.9 0.014 4.9E-07 55.6 26.7 193 323-544 31-251 (255)
477 1ijq_A LDL receptor, low-densi 97.8 0.022 7.7E-07 56.8 29.7 224 286-550 11-242 (316)
478 1kv9_A Type II quinohemoprotei 97.8 0.0043 1.5E-07 69.2 26.2 302 265-596 66-494 (668)
479 3tc9_A Hypothetical hydrolase; 97.8 0.039 1.3E-06 57.7 31.7 157 323-497 141-301 (430)
480 1w6s_A Methanol dehydrogenase 97.8 0.01 3.5E-07 64.7 28.0 50 523-575 483-536 (599)
481 3s94_A LRP-6, low-density lipo 97.8 0.072 2.5E-06 58.4 42.1 399 175-615 45-494 (619)
482 2fp8_A Strictosidine synthase; 97.8 0.0088 3E-07 59.9 25.2 244 323-590 23-312 (322)
483 1ijq_A LDL receptor, low-densi 97.8 0.037 1.3E-06 55.1 29.5 227 227-498 3-239 (316)
484 3tc9_A Hypothetical hydrolase; 97.7 0.0071 2.4E-07 63.4 25.0 143 255-430 138-290 (430)
485 4hw6_A Hypothetical protein, I 97.7 0.012 4E-07 61.7 26.4 143 255-430 140-293 (433)
486 4hw6_A Hypothetical protein, I 97.7 0.038 1.3E-06 57.7 29.8 240 323-589 143-431 (433)
487 3p5b_L Low density lipoprotein 97.7 0.052 1.8E-06 56.1 30.4 225 286-551 93-325 (400)
488 3s25_A Hypothetical 7-bladed b 97.6 0.016 5.4E-07 57.2 24.1 226 327-595 22-259 (302)
489 4a0p_A LRP6, LRP-6, low-densit 97.6 0.14 4.7E-06 56.3 43.9 399 172-615 39-492 (628)
490 3s25_A Hypothetical 7-bladed b 97.6 0.028 9.7E-07 55.4 25.2 246 261-575 21-281 (302)
491 4a0p_A LRP6, LRP-6, low-densit 97.6 0.14 5E-06 56.1 44.3 162 413-594 343-511 (628)
492 2l9w_A U4/U6 snRNA-associated- 97.6 0.00013 4.5E-09 57.2 6.2 77 59-151 21-103 (117)
493 1flg_A Protein (quinoprotein e 97.5 0.041 1.4E-06 60.0 28.1 78 489-575 467-549 (582)
494 3p5b_L Low density lipoprotein 97.4 0.16 5.6E-06 52.3 31.9 231 226-499 84-322 (400)
495 3sov_A LRP-6, low-density lipo 97.4 0.081 2.8E-06 52.6 25.9 201 323-550 39-242 (318)
496 3m0c_C LDL receptor, low-densi 97.4 0.3 1E-05 55.0 32.9 229 227-498 397-633 (791)
497 3kya_A Putative phosphatase; s 97.3 0.085 2.9E-06 55.4 26.2 160 323-497 143-341 (496)
498 2ad6_A Methanol dehydrogenase 97.3 0.033 1.1E-06 60.6 24.0 75 536-615 443-522 (571)
499 3sbq_A Nitrous-oxide reductase 97.3 0.23 7.9E-06 52.0 30.9 304 285-597 80-484 (638)
500 2ism_A Putative oxidoreductase 97.3 0.056 1.9E-06 54.8 23.8 107 216-338 33-153 (352)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.2e-42 Score=387.77 Aligned_cols=401 Identities=13% Similarity=0.174 Sum_probs=306.1
Q ss_pred cchhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcc--e
Q 005140 171 NLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN--R 247 (712)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~--~ 247 (712)
......++|+|+ .++... ++.+.+|+. ........+.+|...|++++|||+|++||+++.++ |+|||.. +.. .
T Consensus 20 ~~~~~~~spdg~-~l~~~~-~~~v~l~~~-~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~-~~~~~~ 95 (611)
T 1nr0_A 20 TAVVLGNTPAGD-KIQYCN-GTSVYTVPV-GSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTT-QTTHIL 95 (611)
T ss_dssp CCCCCEECTTSS-EEEEEE-TTEEEEEET-TCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESS-STTCCE
T ss_pred ceeEEeeCCCCC-EEEeCC-CCEEEEecC-CCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECC-CCccee
Confidence 334455678877 334444 568889998 45667778999999999999999999999999999 8899986 332 2
Q ss_pred eeee-cC-CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEE
Q 005140 248 LMRY-AH-PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFR 325 (712)
Q Consensus 248 ~~~~-~~-~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (712)
...+ .| ..|.+++|||+|++|++++.+. ...+.|++|| ++..+..+.+|...+. +++
T Consensus 96 ~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~------~~~~~v~~wd--~~~~~~~l~gh~~~v~-------------~v~ 154 (611)
T 1nr0_A 96 KTTIPVFSGPVKDISWDSESKRIAAVGEGR------ERFGHVFLFD--TGTSNGNLTGQARAMN-------------SVD 154 (611)
T ss_dssp EEEEECSSSCEEEEEECTTSCEEEEEECCS------SCSEEEEETT--TCCBCBCCCCCSSCEE-------------EEE
T ss_pred eEeecccCCceEEEEECCCCCEEEEEECCC------CceeEEEEee--CCCCcceecCCCCCce-------------EEE
Confidence 2233 24 4599999999999999988651 1125788888 5777888888887764 799
Q ss_pred ecCCCCC-EEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcccee
Q 005140 326 WGGGKDK-YFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELR 403 (712)
Q Consensus 326 ~s~~dg~-~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~ 403 (712)
|+| ++. .|++++ |++|++|+..+++.+.....|...|.+++|+|+|++|++ ++.|+.+++|. ..+.+.+.
T Consensus 155 f~p-~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las-----~s~D~~i~lwd--~~~g~~~~ 226 (611)
T 1nr0_A 155 FKP-SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAS-----TGGDGTIVLYN--GVDGTKTG 226 (611)
T ss_dssp ECS-SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEE-----EETTSCEEEEE--TTTCCEEE
T ss_pred ECC-CCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEE-----EECCCcEEEEE--CCCCcEee
Confidence 999 987 588888 999999999988877767778888999999999999999 77888777654 44443333
Q ss_pred eee-------eeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCC-------------------------
Q 005140 404 QKN-------LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERD------------------------- 451 (712)
Q Consensus 404 ~~~-------~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~------------------------- 451 (712)
... .+......+.|+|+|++|++++.+++ +++|++....
T Consensus 227 ~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~---------v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 297 (611)
T 1nr0_A 227 VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT---------IKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 297 (611)
T ss_dssp ECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE---------EEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCE
T ss_pred eeccccccccccCCCEEEEEECCCCCEEEEEeCCCe---------EEEEeCCCCceeeeecCCCCccceeEEEEEcCCEE
Confidence 221 34556677899999999999999987 4444432210
Q ss_pred ---------------cceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccC--------ceeE--
Q 005140 452 ---------------IPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAG--------RVSK-- 506 (712)
Q Consensus 452 ---------------~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~--------~~~~-- 506 (712)
.......+.+|...|.+++|+|+|++|++++.|+ .|++||+.++.... .+..
T Consensus 298 ~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~---~v~~Wd~~~~~~~~~~~~~h~~~v~~~~ 374 (611)
T 1nr0_A 298 VSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEG---HINSWDISTGISNRVFPDVHATMITGIK 374 (611)
T ss_dssp EEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTCCEEECSSCSCSSCEEEEE
T ss_pred EEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCC---cEEEEECCCCceeeecccCCcceEEEEE
Confidence 0011234568999999999999999999999999 99999986532100 0000
Q ss_pred -------------------------------------------------------------------EEEe-CCCceeEE
Q 005140 507 -------------------------------------------------------------------LTTL-KGKQANAL 518 (712)
Q Consensus 507 -------------------------------------------------------------------~~~~-~~~~v~~l 518 (712)
+..+ ....+.++
T Consensus 375 ~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~v 454 (611)
T 1nr0_A 375 TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCV 454 (611)
T ss_dssp ECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEE
T ss_pred ECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEE
Confidence 0000 01246789
Q ss_pred EEccCCCeEEEEeccCCCceEEEEECCccee--ee-eccccceeeEEECCCCCEEEEEEccceeccccEEEEEecC--ce
Q 005140 519 FWSPSGRFIVLAGLKGFNGQLEFYNVDELET--MA-TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG--KL 593 (712)
Q Consensus 519 ~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~--~~-~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g--~~ 593 (712)
+|||||++|++++. |+.|++||+.++.. +. ..|...|++++|||||++|++++. |+.+++|++.. .+
T Consensus 455 a~spdg~~lasgs~---D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~-----d~~v~~w~~~~~~~~ 526 (611)
T 1nr0_A 455 ALSNDKQFVAVGGQ---DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ-----SRKVIPYSVANNFEL 526 (611)
T ss_dssp EECTTSCEEEEEET---TSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET-----TSCEEEEEGGGTTEE
T ss_pred EEeCCCCEEEEeCC---CCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcC-----CCCEEEEEcCCCCce
Confidence 99999999999998 99999999986543 12 467789999999999999999999 99999999874 33
Q ss_pred eee----ecccceeeeEEecCCCCCCChhhHHHHH
Q 005140 594 LYR----TLKDHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 594 ~~~----~~~~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
+.. .|...|++++|+|++++|++++.|+.|+
T Consensus 527 ~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~ 561 (611)
T 1nr0_A 527 AHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVI 561 (611)
T ss_dssp SCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred eeeeeeeecccceeEEEECCCCCEEEEEECCCcEE
Confidence 322 2778999999999999999999998876
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.2e-41 Score=378.33 Aligned_cols=405 Identities=15% Similarity=0.189 Sum_probs=302.6
Q ss_pred ccchhhccCCCCCceEEEEECCeeEEEecCCC-CCCCcccccCCCcccceEEEcCCCcEEEEEecC----c-eEEeeccc
Q 005140 170 ENLQKWLTDEKARDQFVIRSGTDTEVLWNDAR-HLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQ----G-AAVWGGAN 243 (712)
Q Consensus 170 ~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~-~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~----~-i~iw~~~~ 243 (712)
..+....++|+|+ .++..+.++++.+|+... .......+.+|...|.+++|||+|++||+++.+ + +.+|+..
T Consensus 60 ~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~- 137 (611)
T 1nr0_A 60 HQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG- 137 (611)
T ss_dssp SCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC-
T ss_pred CceEEEEECCCCc-EEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCC-
Confidence 3456667788875 566777899999999832 222344678899999999999999999998865 2 6678754
Q ss_pred CcceeeeecCCCeeEEEecCCCC-EEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcC
Q 005140 244 TFNRLMRYAHPQVKLIDFSPGEK-YLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWP 322 (712)
Q Consensus 244 ~~~~~~~~~~~~v~~i~~Spdg~-~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (712)
........|...|.+++|+|++. +|++++.| ++|++||..+++.+..+.+|...+.
T Consensus 138 ~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D----------~~v~lwd~~~~~~~~~l~~H~~~V~------------- 194 (611)
T 1nr0_A 138 TSNGNLTGQARAMNSVDFKPSRPFRIISGSDD----------NTVAIFEGPPFKFKSTFGEHTKFVH------------- 194 (611)
T ss_dssp CBCBCCCCCSSCEEEEEECSSSSCEEEEEETT----------SCEEEEETTTBEEEEEECCCSSCEE-------------
T ss_pred CCcceecCCCCCceEEEECCCCCeEEEEEeCC----------CeEEEEECCCCeEeeeeccccCceE-------------
Confidence 32222233344599999999997 59999999 9999999999999999999988763
Q ss_pred eEEecCCCCCEEEEec-CCeEEEEEcCCceeccccc-------ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEE
Q 005140 323 VFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKS-------LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLV 394 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~ 394 (712)
+++|+| +|++|++++ |++|++|++.+++.+.... .|...|.+++|+|++++|++ ++.|+.+++|.
T Consensus 195 ~v~fsp-dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s-----~s~D~~v~lWd- 267 (611)
T 1nr0_A 195 SVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS-----ASADKTIKIWN- 267 (611)
T ss_dssp EEEECT-TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEE-----EETTSEEEEEE-
T ss_pred EEEECC-CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEE-----EeCCCeEEEEe-
Confidence 799999 999999999 9999999998877654432 47778999999999999998 77787776654
Q ss_pred ecCCcccee-------------------------------------------eeeeeeecceeEEECcCCCEEEEEEccc
Q 005140 395 QIPSKEELR-------------------------------------------QKNLFSVSDCKMYWQSSGDYLAVKVDRY 431 (712)
Q Consensus 395 ~~~~~~~~~-------------------------------------------~~~~~~~~~~~~~~s~~g~~l~~~~~~~ 431 (712)
+.+.+.+. ....+......+.|+|+|++|++++.++
T Consensus 268 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~ 346 (611)
T 1nr0_A 268 -VATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEG 346 (611)
T ss_dssp -TTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred -CCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCC
Confidence 33322111 1112334456788999999999999887
Q ss_pred cccccccc---------------------------------ccEEEEEEecCCc-------------ce-----------
Q 005140 432 TKTKKSTY---------------------------------TGFELFRIKERDI-------------PI----------- 454 (712)
Q Consensus 432 ~~~~~~~~---------------------------------~~~~l~~l~~~~~-------------~~----------- 454 (712)
....|... ..+++|++..... +.
T Consensus 347 ~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~ 426 (611)
T 1nr0_A 347 HINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIA 426 (611)
T ss_dssp CEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCE
T ss_pred cEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEE
Confidence 63322211 0122222111000 00
Q ss_pred --------------eEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEE-eCCCceeEEE
Q 005140 455 --------------EVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTT-LKGKQANALF 519 (712)
Q Consensus 455 --------------~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~-~~~~~v~~l~ 519 (712)
....+ .|...+.+++|+|+|++||+++.|+ .|++|++.++.. ..+.. .+...|++++
T Consensus 427 ~~~~~~~v~~~~~~~~~~~-~~~~~v~~va~spdg~~lasgs~D~---~v~lwd~~~~~~----~~~~~~~h~~~v~~v~ 498 (611)
T 1nr0_A 427 VAACYKHIAIYSHGKLTEV-PISYNSSCVALSNDKQFVAVGGQDS---KVHVYKLSGASV----SEVKTIVHPAEITSVA 498 (611)
T ss_dssp EEEESSEEEEEETTEEEEE-ECSSCEEEEEECTTSCEEEEEETTS---EEEEEEEETTEE----EEEEEEECSSCEEEEE
T ss_pred EEEeCceEEEEeCCceeee-ecCCCceEEEEeCCCCEEEEeCCCC---eEEEEEccCCce----eeeeccCCCCceEEEE
Confidence 00111 2456788999999999999999999 999999975431 12222 2345799999
Q ss_pred EccCCCeEEEEeccCCCceEEEEECCc-ceeeee----ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecC-c-
Q 005140 520 WSPSGRFIVLAGLKGFNGQLEFYNVDE-LETMAT----AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG-K- 592 (712)
Q Consensus 520 ~spdg~~l~~~~~~~~dg~v~iwd~~~-~~~~~~----~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g-~- 592 (712)
|||+|++|++++. |+.|++|++.+ ++++.. .|...|++++|||||++||+++. |+.|+||++.. .
T Consensus 499 fspdg~~las~s~---d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~-----D~~v~lW~~~~~~~ 570 (611)
T 1nr0_A 499 FSNNGAFLVATDQ---SRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL-----DNSVIVWNMNKPSD 570 (611)
T ss_dssp ECTTSSEEEEEET---TSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEET-----TSCEEEEETTCTTS
T ss_pred ECCCCCEEEEEcC---CCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEEC-----CCcEEEEECCCccc
Confidence 9999999999998 99999999987 655443 37789999999999999999999 99999999974 2
Q ss_pred ee-e--eec-ccceeeeEEecCCCCCCChhhHHHHH
Q 005140 593 LL-Y--RTL-KDHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 593 ~~-~--~~~-~~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
.+ . ..| ...|.+++|+|++. |++++.|+.|+
T Consensus 571 ~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~ 605 (611)
T 1nr0_A 571 HPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIK 605 (611)
T ss_dssp CCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEE
T ss_pred ccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEE
Confidence 22 2 235 68899999999998 99999988765
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=7.1e-40 Score=365.89 Aligned_cols=382 Identities=16% Similarity=0.268 Sum_probs=309.1
Q ss_pred chhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeee
Q 005140 172 LQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMR 250 (712)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~ 250 (712)
+......|+++ .++..+.++.+.+|+. .......+.+|...|.+++|+|+|++|++++.++ +++|+.. .+.+..
T Consensus 183 v~~~~~~~~~~-~l~~~~~d~~v~~w~~--~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~--~~~~~~ 257 (577)
T 2ymu_A 183 VWGVAFSPDGQ-TIASASDDKTVKLWNR--NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQT 257 (577)
T ss_dssp EEEEEECTTSS-CEEEEETTSEEEEECT--TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT--SCEEEE
T ss_pred eeeeeecCCCC-EEEEEcCCCEEEEEeC--CCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC--CCEEEE
Confidence 33445556554 5667778899999986 4566677889999999999999999999999999 8899976 333433
Q ss_pred e--cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecC
Q 005140 251 Y--AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGG 328 (712)
Q Consensus 251 ~--~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 328 (712)
+ +...|.+++|+|++++|++++.+ +.|++|+. +++.++.+.+|...+. +++|+|
T Consensus 258 ~~~~~~~v~~v~~~~d~~~l~~~~~d----------~~i~~w~~-~~~~~~~~~~h~~~v~-------------~~~~~~ 313 (577)
T 2ymu_A 258 LTGHSSSVNGVAFRPDGQTIASASDD----------KTVKLWNR-NGQLLQTLTGHSSSVW-------------GVAFSP 313 (577)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETT----------SCEEEEET-TSCEEEEECCCSSCEE-------------EEEECT
T ss_pred EecCCCCEEEEEEcCCCCEEEEEeCC----------CEEEEEeC-CCcEEEEEecCCCCeE-------------EEEECC
Confidence 3 33459999999999999999999 89999995 7888888988877763 689999
Q ss_pred CCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeee
Q 005140 329 GKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL 407 (712)
Q Consensus 329 ~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 407 (712)
++++|++++ |+.|++|+.....+ .....+...+.+++|+|++++|++ ++.++.+++| +. +.+.+.....
T Consensus 314 -~~~~l~t~~~d~~i~~w~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~-----~~~dg~v~~~--~~-~~~~~~~~~~ 383 (577)
T 2ymu_A 314 -DGQTIASASDDKTVKLWNRNGQHL-QTLTGHSSSVWGVAFSPDGQTIAS-----ASDDKTVKLW--NR-NGQLLQTLTG 383 (577)
T ss_dssp -TSSEEEEEETTSCEEEEETTSCEE-EEECCCSSCEEEEEECTTSSEEEE-----EETTSEEEEE--ET-TCCEEEEEEC
T ss_pred -CCCEEEEEeCCCeEEEEeCCCCee-EEEeCCCCCEEEEEECCCCCEEEE-----EeCCCEEEEE--cC-CCCEEEEecC
Confidence 999999998 99999999875543 334456678999999999999998 6666666655 43 3344444444
Q ss_pred eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCC
Q 005140 408 FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPR 487 (712)
Q Consensus 408 ~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~ 487 (712)
+......+.|+|+|++|++++.++. +.+|+.. +. ....+.+|...|.+++|+|++++|++++.|+
T Consensus 384 ~~~~v~~~~~s~dg~~l~~~~~d~~---------v~~~~~~--~~--~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~-- 448 (577)
T 2ymu_A 384 HSSSVRGVAFSPDGQTIASASDDKT---------VKLWNRN--GQ--LLQTLTGHSSSVWGVAFSPDDQTIASASDDK-- 448 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSE---------EEEECTT--CC--EEEEEECCSSCEEEEEECTTSSEEEEEETTS--
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCE---------EEEEeCC--CC--EEEEecCCCCCeEEEEECCCCCEEEEEcCCC--
Confidence 5556667899999999999998876 7788732 22 2245668999999999999999999999999
Q ss_pred CeEEEEEeecccccCceeEEEEeCC--CceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEE
Q 005140 488 PDISFYSMRTAQHAGRVSKLTTLKG--KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEW 563 (712)
Q Consensus 488 ~~v~i~d~~~~~~~~~~~~~~~~~~--~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~ 563 (712)
.|++|++.. . .+..+.+ ..+.+++|+|+|++|++++. |+.|++||.. ++++.. .|...|++++|
T Consensus 449 -~v~~w~~~~-~------~~~~~~~~~~~v~~~~~spd~~~las~~~---d~~i~iw~~~-~~~~~~~~~h~~~v~~l~~ 516 (577)
T 2ymu_A 449 -TVKLWNRNG-Q------LLQTLTGHSSSVRGVAFSPDGQTIASASD---DKTVKLWNRN-GQLLQTLTGHSSSVRGVAF 516 (577)
T ss_dssp -EEEEEETTS-C------EEEEEECCSSCEEEEEECTTSCEEEEEET---TSEEEEEETT-SCEEEEEECCSSCEEEEEE
T ss_pred -EEEEEECCC-C------EEEEEcCCCCCEEEEEEcCCCCEEEEEeC---CCEEEEEcCC-CCEEEEEeCCCCCEEEEEE
Confidence 999999732 1 3444443 47899999999999999998 9999999975 455443 67789999999
Q ss_pred CCCCCEEEEEEccceeccccEEEEEecCceeeee--cccceeeeEEecCCCCCCChhhHHHHH
Q 005140 564 DPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 564 spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
+|+|++|++++. |+.|+||+..|+.+... |.+.|++++|+|++++|+|++.|+.|+
T Consensus 517 s~dg~~l~s~~~-----dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~ 574 (577)
T 2ymu_A 517 SPDGQTIASASD-----DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVK 574 (577)
T ss_dssp CTTSSCEEEEET-----TSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred cCCCCEEEEEEC-----cCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEE
Confidence 999999999999 99999999988877654 778999999999999999999887654
No 4
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1e-37 Score=348.35 Aligned_cols=396 Identities=16% Similarity=0.270 Sum_probs=305.1
Q ss_pred ccchhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCccee
Q 005140 170 ENLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRL 248 (712)
Q Consensus 170 ~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~ 248 (712)
..+.+..++|+|+ .++..+.++++.+|+. .++....+.+|...|++++|||||++||+++.|+ |+|||.. ++.+
T Consensus 17 ~~V~~~a~spdg~-~las~~~d~~v~iWd~--~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~--~~~~ 91 (577)
T 2ymu_A 17 SSVRGVAFSPDGQ-TIASASDDKTVKLWNR--NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN--GQLL 91 (577)
T ss_dssp SCEEEEEECTTSS-CEEEEETTSEEEEECT--TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT--SCEE
T ss_pred CcEEEEEECCCCC-EEEEEeCCCEEEEEEC--CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECC--CCEE
Confidence 3455667788887 4566778899999996 5677788999999999999999999999999999 8899976 3444
Q ss_pred eee-cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccC-------------C-
Q 005140 249 MRY-AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVG-------------G- 312 (712)
Q Consensus 249 ~~~-~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~-------------~- 312 (712)
..+ .|. .|.+++|+|+|++|++++.+ +.+++|+.... ....+..+...+... .
T Consensus 92 ~~~~~~~~~v~~~~~s~d~~~l~~~~~d----------~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 160 (577)
T 2ymu_A 92 QTLTGHSSSVRGVAFSPDGQTIASASDD----------KTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDGQTIASASDD 160 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETT----------SCEEEEETTCC-EEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred EEEECCCCCEEEEEECCCCCEEEEEcCC----------Cceeecccccc-eeeeccCCCCceeeeeeecCCccceecccc
Confidence 444 244 49999999999999999999 88999986332 222222221111000 0
Q ss_pred ---------------CCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEE
Q 005140 313 ---------------TGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIIS 376 (712)
Q Consensus 313 ---------------~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la 376 (712)
.....+..+ .+.|+| ++++|++++ |+.|++|+.. ++.+.....|...|.+++|+|++.+|+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~-~~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~ 237 (577)
T 2ymu_A 161 KTVKLWNRNGQLLQTLTGHSSSVW-GVAFSP-DGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIA 237 (577)
T ss_dssp SEEEEECTTSCEEEEEECCSSCEE-EEEECT-TSSCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEECTTSSCEE
T ss_pred cceeccccceeeeeeccCCCccee-eeeecC-CCCEEEEEcCCCEEEEEeCC-CcEEEEEecCCCCEEEEEECCCCCEEE
Confidence 000000001 578999 999999998 9999999964 555555566778899999999999999
Q ss_pred EEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeE
Q 005140 377 LFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEV 456 (712)
Q Consensus 377 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 456 (712)
+ ++.++.+++|. . ..+.+.....+......+.|+|+|..|++++.++. +.+|+... . ..
T Consensus 238 ~-----~~~d~~i~~w~--~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~---------i~~w~~~~--~--~~ 296 (577)
T 2ymu_A 238 S-----ASDDKTVKLWN--R-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKT---------VKLWNRNG--Q--LL 296 (577)
T ss_dssp E-----EETTSCEEEEC--T-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC---------EEEEETTS--C--EE
T ss_pred E-----EeCCCEEEEEe--C-CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCE---------EEEEeCCC--c--EE
Confidence 8 66777777664 3 23334444445556667889999999999998877 78887432 2 22
Q ss_pred EEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC--CceeEEEEccCCCeEEEEeccC
Q 005140 457 LELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG--KQANALFWSPSGRFIVLAGLKG 534 (712)
Q Consensus 457 ~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~v~~l~~spdg~~l~~~~~~~ 534 (712)
..+.+|...|.+++|+|++++|++++.|+ .|++|++... .+..+.. ..+.+++|+|+|++|++++.
T Consensus 297 ~~~~~h~~~v~~~~~~~~~~~l~t~~~d~---~i~~w~~~~~-------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-- 364 (577)
T 2ymu_A 297 QTLTGHSSSVWGVAFSPDGQTIASASDDK---TVKLWNRNGQ-------HLQTLTGHSSSVWGVAFSPDGQTIASASD-- 364 (577)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTS---CEEEEETTSC-------EEEEECCCSSCEEEEEECTTSSEEEEEET--
T ss_pred EEEecCCCCeEEEEECCCCCEEEEEeCCC---eEEEEeCCCC-------eeEEEeCCCCCEEEEEECCCCCEEEEEeC--
Confidence 45678999999999999999999999999 9999997532 3334443 47899999999999999998
Q ss_pred CCceEEEEECCcceeee--eccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCceeeee--cccceeeeEEecC
Q 005140 535 FNGQLEFYNVDELETMA--TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRT--LKDHFFQFLWRPR 610 (712)
Q Consensus 535 ~dg~v~iwd~~~~~~~~--~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~--~~~~i~~~~w~p~ 610 (712)
+|.|++|+.. ++.+. ..|...|++++|+|+|++|++++. |+.+++|+.+++.+... |...+++++|+|+
T Consensus 365 -dg~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~-----d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d 437 (577)
T 2ymu_A 365 -DKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASD-----DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPD 437 (577)
T ss_dssp -TSEEEEEETT-CCEEEEEECCSSCEEEEEECTTSSCEEEEET-----TSEEEEECTTCCEEEEEECCSSCEEEEEECTT
T ss_pred -CCEEEEEcCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEeC-----CCEEEEEeCCCCEEEEecCCCCCeEEEEECCC
Confidence 9999999976 44443 357789999999999999999999 99999999888776544 6688999999999
Q ss_pred CCCCCChhhHHHHH
Q 005140 611 PPSFLTPEKEEEIA 624 (712)
Q Consensus 611 ~~~l~s~~~d~~i~ 624 (712)
++.|++++.|+.|+
T Consensus 438 ~~~l~~~~~d~~v~ 451 (577)
T 2ymu_A 438 DQTIASASDDKTVK 451 (577)
T ss_dssp SSEEEEEETTSEEE
T ss_pred CCEEEEEcCCCEEE
Confidence 99999999887664
No 5
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.1e-36 Score=318.96 Aligned_cols=281 Identities=18% Similarity=0.280 Sum_probs=234.6
Q ss_pred cccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-CC-CeeEEEecCCCCEEEEEcCCCCCCCcCC
Q 005140 206 EPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDA 282 (712)
Q Consensus 206 ~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~ 282 (712)
...+.+|...|++++|+|+|.+||+++.|+ |+|||.. ++.....+. |. .|.+++|+|+|++|++|+.|
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~-~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D-------- 171 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYE-TGDFERTLKGHTDSVQDISFDHSGKLLASCSAD-------- 171 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETT-TCCCCEEECCCSSCEEEEEECTTSSEEEEEETT--------
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCC--------
Confidence 456789999999999999999999999999 8899998 666665553 44 59999999999999999999
Q ss_pred CccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccccccccc
Q 005140 283 NRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVE 361 (712)
Q Consensus 283 ~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~ 361 (712)
++|+|||+.+++.++.+.+|...+. +++|+| ++++|++++ |++|++||+.++..+.....|..
T Consensus 172 --~~i~iwd~~~~~~~~~~~~h~~~V~-------------~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~ 235 (410)
T 1vyh_C 172 --MTIKLWDFQGFECIRTMHGHDHNVS-------------SVSIMP-NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE 235 (410)
T ss_dssp --SCCCEEETTSSCEEECCCCCSSCEE-------------EEEECS-SSSEEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred --CeEEEEeCCCCceeEEEcCCCCCEE-------------EEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCc
Confidence 9999999999999999999987764 799999 999999999 99999999999887776667777
Q ss_pred CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccccccc
Q 005140 362 NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTG 441 (712)
Q Consensus 362 ~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~ 441 (712)
.|.++.|+|++.+|++ ++.|+.+++|. +.+.....
T Consensus 236 ~v~~~~~~~~g~~l~s-----~s~D~~v~vwd--~~~~~~~~-------------------------------------- 270 (410)
T 1vyh_C 236 WVRMVRPNQDGTLIAS-----CSNDQTVRVWV--VATKECKA-------------------------------------- 270 (410)
T ss_dssp CEEEEEECTTSSEEEE-----EETTSCEEEEE--TTTCCEEE--------------------------------------
T ss_pred cEEEEEECCCCCEEEE-----EcCCCeEEEEE--CCCCceee--------------------------------------
Confidence 8999999999999988 66777766553 32222111
Q ss_pred EEEEEEecCCcceeEEEecCCCCceEEEEEeeC--------------------CCEEEEEEcCCCCCeEEEEEeeccccc
Q 005140 442 FELFRIKERDIPIEVLELDNKNDKIIAFAWEPK--------------------GHRFAVIHGDSPRPDISFYSMRTAQHA 501 (712)
Q Consensus 442 ~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~--------------------g~~l~~~~~d~~~~~v~i~d~~~~~~~ 501 (712)
.+.+|...|.+++|+|+ |.+|++++.|+ .|++||+.++.
T Consensus 271 ----------------~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~---~i~iwd~~~~~-- 329 (410)
T 1vyh_C 271 ----------------ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK---TIKMWDVSTGM-- 329 (410)
T ss_dssp ----------------EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS---EEEEEETTTTE--
T ss_pred ----------------EecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCC---eEEEEECCCCc--
Confidence 22344555566666554 77899999999 99999997654
Q ss_pred CceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccc
Q 005140 502 GRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSV 577 (712)
Q Consensus 502 ~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~ 577 (712)
.+..+.+| .|++++|+|+|++|++++. ||.|++||+.+++.+.. .|...|++++|+|++.+|++++.
T Consensus 330 ----~~~~~~~h~~~v~~v~~~~~g~~l~s~s~---D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~-- 400 (410)
T 1vyh_C 330 ----CLMTLVGHDNWVRGVLFHSGGKFILSCAD---DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV-- 400 (410)
T ss_dssp ----EEEEEECCSSCEEEEEECSSSSCEEEEET---TTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEET--
T ss_pred ----eEEEEECCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeC--
Confidence 45555544 6899999999999999998 99999999998877664 67789999999999999999999
Q ss_pred eeccccEEEEEe
Q 005140 578 HEMENGFNIWSF 589 (712)
Q Consensus 578 ~~~d~~v~iw~~ 589 (712)
|+.|+||++
T Consensus 401 ---D~~i~vW~~ 409 (410)
T 1vyh_C 401 ---DQTVKVWEC 409 (410)
T ss_dssp ---TSEEEEEC-
T ss_pred ---CCcEEEEeC
Confidence 999999985
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.7e-36 Score=363.98 Aligned_cols=400 Identities=13% Similarity=0.150 Sum_probs=306.3
Q ss_pred cchhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceee
Q 005140 171 NLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLM 249 (712)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~ 249 (712)
.+....++|+++ .+++.+.++++.+|+. ..+.....+.+|...|++++|||+|++||+++.++ |+|||.. +++.+.
T Consensus 617 ~v~~~~~s~~~~-~l~s~~~d~~i~vw~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~-~~~~~~ 693 (1249)
T 3sfz_A 617 AVYHACFSQDGQ-RIASCGADKTLQVFKA-ETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA-TGKLVH 693 (1249)
T ss_dssp CEEEEEECTTSS-EEEEEETTSCEEEEET-TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TCCEEE
T ss_pred cEEEEEECCCCC-EEEEEeCCCeEEEEEC-CCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC-CCceEE
Confidence 344556777665 5566778899999999 56777888899999999999999999999999999 8899999 777777
Q ss_pred eec-CC-CeeEEEecC--CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEE
Q 005140 250 RYA-HP-QVKLIDFSP--GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFR 325 (712)
Q Consensus 250 ~~~-~~-~v~~i~~Sp--dg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (712)
.+. |. .|.+++|+| ++.++++++.+ +.|++||+.+++.+..+.+|...+. +++
T Consensus 694 ~~~~~~~~v~~~~~~~~~~~~~l~sg~~d----------~~v~vwd~~~~~~~~~~~~h~~~v~-------------~~~ 750 (1249)
T 3sfz_A 694 TYDEHSEQVNCCHFTNKSNHLLLATGSND----------FFLKLWDLNQKECRNTMFGHTNSVN-------------HCR 750 (1249)
T ss_dssp EEECCSSCEEEEEECSSSSCCEEEEEETT----------SCEEEEETTSSSEEEEECCCSSCEE-------------EEE
T ss_pred EEcCCCCcEEEEEEecCCCceEEEEEeCC----------CeEEEEECCCcchhheecCCCCCEE-------------EEE
Confidence 663 44 499999999 45689999999 9999999999999999999887764 799
Q ss_pred ecCCCCCEEEEec-CCeEEEEEcCCceecccc------------------------------------------------
Q 005140 326 WGGGKDKYFAKLG-KNMISVYETESFTLIDKK------------------------------------------------ 356 (712)
Q Consensus 326 ~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~------------------------------------------------ 356 (712)
|+| ++++|++++ |+.|++|++.++......
T Consensus 751 ~sp-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~ 829 (1249)
T 3sfz_A 751 FSP-DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTS 829 (1249)
T ss_dssp ECS-STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTC
T ss_pred Eec-CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCC
Confidence 999 999999999 999999998765432111
Q ss_pred -------cccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEc
Q 005140 357 -------SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVD 429 (712)
Q Consensus 357 -------~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~ 429 (712)
..+...|.+++|+|++..+++ ++.++. |.+|+..+...+.....+......+.|+|+|.+|++++.
T Consensus 830 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~-----~~~dg~--v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~ 902 (1249)
T 3sfz_A 830 GLLAEIHTGHHSTIQYCDFSPYDHLAVI-----ALSQYC--VELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASD 902 (1249)
T ss_dssp CEEEEEECSSSSCCCEEEECSSTTEEEE-----ECSSSC--EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CceeEEcCCCCCceEEEEEcCCCCEEEE-----EeCCCe--EEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeC
Confidence 023345778888888888887 555555 445566666655555556666777889999999999888
Q ss_pred cccccccccc----------------------------------------------------------------------
Q 005140 430 RYTKTKKSTY---------------------------------------------------------------------- 439 (712)
Q Consensus 430 ~~~~~~~~~~---------------------------------------------------------------------- 439 (712)
++....|...
T Consensus 903 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~ 982 (1249)
T 3sfz_A 903 DQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDED 982 (1249)
T ss_dssp TSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETT
T ss_pred CCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCC
Confidence 7763322210
Q ss_pred ccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeeccccc------Cce---------
Q 005140 440 TGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHA------GRV--------- 504 (712)
Q Consensus 440 ~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~------~~~--------- 504 (712)
+.+.+|++.... ....+.+|...|.+++|+|+|++|++++.|+ .|++|++.++... ..+
T Consensus 983 g~i~i~d~~~~~---~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~ 1056 (1249)
T 3sfz_A 983 GAIKIIELPNNR---VFSSGVGHKKAVRHIQFTADGKTLISSSEDS---VIQVWNWQTGDYVFLQAHQETVKDFRLLQDS 1056 (1249)
T ss_dssp SCCEEEETTTTS---CEEECCCCSSCCCCEEECSSSSCEEEECSSS---BEEEEETTTTEEECCBCCSSCEEEEEECSSS
T ss_pred CCEEEEEcCCCc---eeeecccCCCceEEEEECCCCCEEEEEcCCC---EEEEEECCCCceEEEecCCCcEEEEEEcCCC
Confidence 112333332211 1234557899999999999999999999998 8999997653210 000
Q ss_pred -------------------eEEEEe--CCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeE
Q 005140 505 -------------------SKLTTL--KGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDV 561 (712)
Q Consensus 505 -------------------~~~~~~--~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~ 561 (712)
..+..+ +...+.+++|+|+|+++++++. ||.|++||+.+++.+.. .|...|+++
T Consensus 1057 ~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~---d~~v~iwd~~~~~~~~~l~~h~~~v~~~ 1133 (1249)
T 3sfz_A 1057 RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSA---DKTAKIWSFDLLSPLHELKGHNGCVRCS 1133 (1249)
T ss_dssp EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECC---SSCCCEECSSSSSCSBCCCCCSSCEEEE
T ss_pred cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcC---CCcEEEEECCCcceeeeeccCCCcEEEE
Confidence 011112 2335788999999999999998 99999999998877654 577889999
Q ss_pred EECCCCCEEEEEEccceeccccEEEEEec-Cceeee-----------ecccceeeeEEecCCCCCCChh
Q 005140 562 EWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYR-----------TLKDHFFQFLWRPRPPSFLTPE 618 (712)
Q Consensus 562 ~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~-----------~~~~~i~~~~w~p~~~~l~s~~ 618 (712)
+|||+|++|++++. |+.|++|++. +..+.. .|.+.+.+++|+|++.+|++++
T Consensus 1134 ~~s~dg~~lat~~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~ 1197 (1249)
T 3sfz_A 1134 AFSLDGILLATGDD-----NGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG 1197 (1249)
T ss_dssp EECSSSSEEEEEET-----TSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES
T ss_pred EECCCCCEEEEEeC-----CCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC
Confidence 99999999999999 9999999987 444432 2567899999999999998875
No 7
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.8e-35 Score=302.14 Aligned_cols=279 Identities=14% Similarity=0.221 Sum_probs=228.3
Q ss_pred cccCCCcccceEEEcCC----CcEEEEEecCc-eEEeecccCcceee--ee-cCC-CeeEEEecCCCCEEEEEcCCCCCC
Q 005140 208 VYKRSYWTESFVQWSPL----GTYLATVHRQG-AAVWGGANTFNRLM--RY-AHP-QVKLIDFSPGEKYLVTYSSHEPSN 278 (712)
Q Consensus 208 ~~~~~~~~v~~v~~Spd----g~~lat~~~~~-i~iw~~~~~~~~~~--~~-~~~-~v~~i~~Spdg~~l~t~s~d~~~~ 278 (712)
.+++|...|++++|+|+ +.+||+|+.|+ |+||+.. ...... .+ .|. .|.+++|+|++.++++++.|
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~-~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D---- 101 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWR-DERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLD---- 101 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEE-TTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETT----
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECC-CCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCC----
Confidence 45789999999999985 67999999999 8899987 443322 22 244 59999999999999999999
Q ss_pred CcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccccc
Q 005140 279 PRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKS 357 (712)
Q Consensus 279 ~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~ 357 (712)
++|++||+.+++.+..+..+...+ + +++|+| ++++|++++ ++.|++|++.++.......
T Consensus 102 ------~~i~lWd~~~~~~~~~~~~~~~~~------------~-~~~~sp-dg~~l~~g~~dg~v~i~~~~~~~~~~~~~ 161 (321)
T 3ow8_A 102 ------AHIRLWDLENGKQIKSIDAGPVDA------------W-TLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLD 161 (321)
T ss_dssp ------SEEEEEETTTTEEEEEEECCTTCC------------C-CEEECT-TSSEEEEECTTSEEEEEETTTCSEEEEEE
T ss_pred ------CcEEEEECCCCCEEEEEeCCCccE------------E-EEEECC-CCCEEEEEcCCCcEEEEEcCCCceeEEec
Confidence 999999999999999988776654 2 599999 999999999 9999999999887665554
Q ss_pred ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccc
Q 005140 358 LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKS 437 (712)
Q Consensus 358 ~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~ 437 (712)
.+...|.+++|+|++++|++ ++.++.+++| ++.+.+
T Consensus 162 ~~~~~v~~~~~spdg~~las-----g~~dg~i~iw--d~~~~~------------------------------------- 197 (321)
T 3ow8_A 162 TRGKFILSIAYSPDGKYLAS-----GAIDGIINIF--DIATGK------------------------------------- 197 (321)
T ss_dssp CSSSCEEEEEECTTSSEEEE-----EETTSCEEEE--ETTTTE-------------------------------------
T ss_pred CCCceEEEEEECCCCCEEEE-----EcCCCeEEEE--ECCCCc-------------------------------------
Confidence 55566888888888888887 5566655543 322111
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ce
Q 005140 438 TYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QA 515 (712)
Q Consensus 438 ~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v 515 (712)
....+.+|..+|.+++|+|++++|++++.|+ .|++||++++. .+..+.+| .|
T Consensus 198 -----------------~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg---~i~iwd~~~~~------~~~~~~~h~~~v 251 (321)
T 3ow8_A 198 -----------------LLHTLEGHAMPIRSLTFSPDSQLLVTASDDG---YIKIYDVQHAN------LAGTLSGHASWV 251 (321)
T ss_dssp -----------------EEEEECCCSSCCCEEEECTTSCEEEEECTTS---CEEEEETTTCC------EEEEECCCSSCE
T ss_pred -----------------EEEEEcccCCceeEEEEcCCCCEEEEEcCCC---eEEEEECCCcc------eeEEEcCCCCce
Confidence 1123457889999999999999999999999 99999997654 45566555 68
Q ss_pred eEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEe
Q 005140 516 NALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSF 589 (712)
Q Consensus 516 ~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~ 589 (712)
.+++|+|+|++|++++. |+.|++||+.+++++.+ .|...|.+++|+|+|++|++++. |+.|+||++
T Consensus 252 ~~~~~sp~~~~l~s~s~---D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~-----d~~i~vwd~ 319 (321)
T 3ow8_A 252 LNVAFCPDDTHFVSSSS---DKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGD-----DQEIHIYDC 319 (321)
T ss_dssp EEEEECTTSSEEEEEET---TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-----TCCEEEEEC
T ss_pred EEEEECCCCCEEEEEeC---CCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeC-----CCeEEEEeC
Confidence 99999999999999998 99999999999888775 56789999999999999999999 999999995
No 8
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.4e-36 Score=346.11 Aligned_cols=405 Identities=10% Similarity=0.053 Sum_probs=286.7
Q ss_pred cchhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceee
Q 005140 171 NLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLM 249 (712)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~ 249 (712)
.+.+..++|+++ .++++..++++.+|+.. ....... ..|...|++++|+| |++||+++.|+ |+|||+. +.+.+.
T Consensus 19 ~V~~lafspdg~-~lAsgs~Dg~I~lw~~~-~~~~~~~-~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~-~~~~~~ 93 (902)
T 2oaj_A 19 KPIAAAFDFTQN-LLAIATVTGEVHIYGQQ-QVEVVIK-LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLY-SQKVLT 93 (902)
T ss_dssp CEEEEEEETTTT-EEEEEETTSEEEEECST-TCEEEEE-CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETT-TCSEEE
T ss_pred CcEEEEECCCCC-EEEEEeCCCEEEEEeCC-CcEEEEE-cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECC-CCcEEE
Confidence 455667778775 66788889999999973 3322222 34778999999999 89999999999 8899999 777777
Q ss_pred eecCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcee-----------eeccCCCcccccCCCCCcC
Q 005140 250 RYAHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVM-----------RDFKGSADEFAVGGTGGVA 317 (712)
Q Consensus 250 ~~~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~-----------~~~~~~~~~~~~~~~~~~~ 317 (712)
.+.|. .|.+++|+|++++|++|+.+ ++|++||+.+++.. ..+.+|...+.
T Consensus 94 ~~~~~~~V~~v~~sp~g~~l~sgs~d----------g~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~-------- 155 (902)
T 2oaj_A 94 TVFVPGKITSIDTDASLDWMLIGLQN----------GSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIV-------- 155 (902)
T ss_dssp EEECSSCEEEEECCTTCSEEEEEETT----------SCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCC--------
T ss_pred EEcCCCCEEEEEECCCCCEEEEEcCC----------CcEEEEECCCCccccceeccccccccccccCCCCeE--------
Confidence 77655 49999999999999999999 99999999888753 22344544442
Q ss_pred CCCcCeEEecCCCC-CEEEEec-CCeEEEEEcCCceeccccccc------------------ccCeeeEEECCCCCeEEE
Q 005140 318 GVSWPVFRWGGGKD-KYFAKLG-KNMISVYETESFTLIDKKSLK------------------VENVMDFSWSPTDPIISL 377 (712)
Q Consensus 318 ~~~~~~~~~s~~dg-~~la~~~-d~~i~iwd~~~~~~~~~~~~~------------------~~~v~~~~~sp~~~~la~ 377 (712)
+++|+| ++ .+|++++ |+.| +||+.+++.+.....+ ...|.+++|+|+|.+|++
T Consensus 156 -----sl~~sp-~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~las 228 (902)
T 2oaj_A 156 -----SIQWNP-RDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIIT 228 (902)
T ss_dssp -----EEEEET-TEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEE
T ss_pred -----EEEEcc-CCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEE
Confidence 799999 75 5777777 9999 9999988766444333 356999999999999999
Q ss_pred EeecCCCCCCCeEEEEEecCCccceeeeee------------------eeecceeEEEC----cCC-CEEEEEEcccc--
Q 005140 378 FVPELGGGNQPARVSLVQIPSKEELRQKNL------------------FSVSDCKMYWQ----SSG-DYLAVKVDRYT-- 432 (712)
Q Consensus 378 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------------------~~~~~~~~~~s----~~g-~~l~~~~~~~~-- 432 (712)
++.|+.+++| ++.+.+.+....+ +......+.|+ |++ ..|++++.+..
T Consensus 229 -----gs~Dg~i~lW--d~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~ 301 (902)
T 2oaj_A 229 -----IHEDNSLVFW--DANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGD 301 (902)
T ss_dssp -----EETTCCEEEE--ETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSS
T ss_pred -----EECCCeEEEE--ECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCC
Confidence 7777776655 5554444332111 12235567884 444 34555533310
Q ss_pred ---ccccc----------------------------------------------c----------------cccEEEEEE
Q 005140 433 ---KTKKS----------------------------------------------T----------------YTGFELFRI 447 (712)
Q Consensus 433 ---~~~~~----------------------------------------------~----------------~~~~~l~~l 447 (712)
...+. . .+.+.+|++
T Consensus 302 ~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~ 381 (902)
T 2oaj_A 302 NQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLY 381 (902)
T ss_dssp CCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEET
T ss_pred CceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEEC
Confidence 00000 0 023555554
Q ss_pred ecCCc----------------ceeEE----------------------EecCCCCceEEEEEeeCCCEEEEEEcCCCCCe
Q 005140 448 KERDI----------------PIEVL----------------------ELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPD 489 (712)
Q Consensus 448 ~~~~~----------------~~~~~----------------------~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~ 489 (712)
..... .+..+ .+.+|...+.+++|+|++++|++++.|+ +
T Consensus 382 ~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~Dg---t 458 (902)
T 2oaj_A 382 PSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNG---S 458 (902)
T ss_dssp TTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTS---E
T ss_pred CCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCC---c
Confidence 21100 00000 1234445555667789999999999999 9
Q ss_pred EEEEEeecccccCceeEEEE-------eCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcce--------------
Q 005140 490 ISFYSMRTAQHAGRVSKLTT-------LKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELE-------------- 548 (712)
Q Consensus 490 v~i~d~~~~~~~~~~~~~~~-------~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~-------------- 548 (712)
|++||+.++........... -+...|.+++|||||++||+|+. ||+|+||++.+++
T Consensus 459 VrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~---DgtV~lwd~~~~~~~~~~~~~~~~~~~ 535 (902)
T 2oaj_A 459 VRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIE---TGDVVLFKYEVNQFYSVENRPESGDLE 535 (902)
T ss_dssp EEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEET---TSCEEEEEEEECCC-------------
T ss_pred EEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEec---CcEEEEEEecCccccCccccCCCcccc
Confidence 99999977632110001111 12337999999999999999998 9999999998652
Q ss_pred -------------------------------eee--eccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCceee
Q 005140 549 -------------------------------TMA--TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLY 595 (712)
Q Consensus 549 -------------------------------~~~--~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~ 595 (712)
++. ..|...|++++||||| +||+|+. |+.|+|||+.+..+.
T Consensus 536 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~-----D~tv~lwd~~~~~~~ 609 (902)
T 2oaj_A 536 MNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYA-----AGSLMLIDRRGPAII 609 (902)
T ss_dssp --CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEET-----TSEEEEEETTTTEEE
T ss_pred eeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeC-----CCcEEEEECCCCeEE
Confidence 122 2577899999999999 9999999 999999999875432
Q ss_pred e---------ecccceeeeEEe-----cCC---CCCCChhhHHHHH
Q 005140 596 R---------TLKDHFFQFLWR-----PRP---PSFLTPEKEEEIA 624 (712)
Q Consensus 596 ~---------~~~~~i~~~~w~-----p~~---~~l~s~~~d~~i~ 624 (712)
. .|.+.|++++|+ ||| ++|++++.|++|+
T Consensus 610 ~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~ 655 (902)
T 2oaj_A 610 YMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVI 655 (902)
T ss_dssp EEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEE
T ss_pred EEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEE
Confidence 1 355679999999 885 7999999998886
No 9
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.8e-35 Score=304.14 Aligned_cols=280 Identities=16% Similarity=0.261 Sum_probs=230.4
Q ss_pred cccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-CC-CeeEEEecCCCCEEEEEcCCCCCCCcCC
Q 005140 206 EPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDA 282 (712)
Q Consensus 206 ~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~ 282 (712)
...+.+|...|++++|||+|++||+++.|+ |+|||.. +...+..+. |. .|.+++|+|+|++|++++.+
T Consensus 48 ~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d-------- 118 (340)
T 1got_B 48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSY-TTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLD-------- 118 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT-TCCEEEEEECSSSCEEEEEECTTSSEEEEEETT--------
T ss_pred heeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECC-CCCcceEeecCCccEEEEEECCCCCEEEEEeCC--------
Confidence 456789999999999999999999999999 8899998 677666653 33 49999999999999999999
Q ss_pred CccEEEEEEccCCc----eeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceecccccc
Q 005140 283 NRVVINIFDVRTGK----VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSL 358 (712)
Q Consensus 283 ~~~~I~iwd~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~ 358 (712)
+.|++|++.++. ..+.+.+|...+. ++.|++ ++.+++++.|+.|++||+.++..+.....
T Consensus 119 --~~v~iw~~~~~~~~~~~~~~~~~h~~~v~-------------~~~~~~-~~~l~s~s~d~~i~~wd~~~~~~~~~~~~ 182 (340)
T 1got_B 119 --NICSIYNLKTREGNVRVSRELAGHTGYLS-------------CCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTG 182 (340)
T ss_dssp --CEEEEEETTTCSBSCEEEEEEECCSSCEE-------------EEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred --CeEEEEECccCCCcceeEEEecCCCccEE-------------EEEECC-CCcEEEEECCCcEEEEECCCCcEEEEEcC
Confidence 999999997653 4566777776653 688999 88754444499999999999888777767
Q ss_pred cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccc
Q 005140 359 KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKST 438 (712)
Q Consensus 359 ~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~ 438 (712)
|...|.+++|+|++.+|++ ++.++.+++|. +.+..
T Consensus 183 h~~~v~~~~~~~~~~~l~s-----g~~d~~v~~wd--~~~~~-------------------------------------- 217 (340)
T 1got_B 183 HTGDVMSLSLAPDTRLFVS-----GACDASAKLWD--VREGM-------------------------------------- 217 (340)
T ss_dssp CSSCEEEEEECTTSSEEEE-----EETTSCEEEEE--TTTCS--------------------------------------
T ss_pred CCCceEEEEECCCCCEEEE-----EeCCCcEEEEE--CCCCe--------------------------------------
Confidence 8888999999999998888 66777666553 21110
Q ss_pred cccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC----Cc
Q 005140 439 YTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG----KQ 514 (712)
Q Consensus 439 ~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~----~~ 514 (712)
....+.+|...|.+++|+|++++|++++.|+ .|++||++++. .+..+.. ..
T Consensus 218 ----------------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~---~v~iwd~~~~~------~~~~~~~~~~~~~ 272 (340)
T 1got_B 218 ----------------CRQTFTGHESDINAICFFPNGNAFATGSDDA---TCRLFDLRADQ------ELMTYSHDNIICG 272 (340)
T ss_dssp ----------------EEEEECCCSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTTE------EEEEECCTTCCSC
T ss_pred ----------------eEEEEcCCcCCEEEEEEcCCCCEEEEEcCCC---cEEEEECCCCc------EEEEEccCCcccc
Confidence 0123457889999999999999999999999 99999997644 3333332 25
Q ss_pred eeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 515 ANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 515 v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
+.+++|+|+|++|++++. ||.|++||+.+++.+.. .|...|++++|+|+|++|++++. |+.|+||+
T Consensus 273 v~~~~~s~~g~~l~~g~~---d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~-----D~~i~iWd 340 (340)
T 1got_B 273 ITSVSFSKSGRLLLAGYD---DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW-----DSFLKIWN 340 (340)
T ss_dssp EEEEEECTTSSEEEEEET---TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEET-----TSCEEEEC
T ss_pred eEEEEECCCCCEEEEECC---CCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcC-----CccEEecC
Confidence 899999999999999998 99999999988776654 67789999999999999999999 99999996
No 10
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.3e-34 Score=325.71 Aligned_cols=415 Identities=13% Similarity=0.167 Sum_probs=286.8
Q ss_pred ccchhhccCCCCCceEEEEECCeeEEEecCCCCC----CCcccccCCCcc-cceEEEcC--CCcEEEEEecCc-eEEeec
Q 005140 170 ENLQKWLTDEKARDQFVIRSGTDTEVLWNDARHL----KPEPVYKRSYWT-ESFVQWSP--LGTYLATVHRQG-AAVWGG 241 (712)
Q Consensus 170 ~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~----~~~~~~~~~~~~-v~~v~~Sp--dg~~lat~~~~~-i~iw~~ 241 (712)
..+....++|+++ .+++.. ++.+.+|+.. .+ .....+.+|... |++++||| +|++||+++.++ |+||+.
T Consensus 19 ~~v~~~~~spdg~-~l~~~~-~~~v~v~~~~-~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~ 95 (615)
T 1pgu_A 19 NFTTHLSYDPTTN-AIAYPC-GKSAFVRCLD-DGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGW 95 (615)
T ss_dssp TCCCCCEEETTTT-EEEEEE-TTEEEEEECC-SSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEE
T ss_pred CceeEEEECCCCC-EEEEec-CCeEEEEECC-CCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeC
Confidence 4456667778776 333333 7788899984 55 677788999999 99999999 999999999999 889999
Q ss_pred ccCc--------ceeeeec-C-CCeeEEEecCCCCEEEEEcCCCCC----------------------------CCc---
Q 005140 242 ANTF--------NRLMRYA-H-PQVKLIDFSPGEKYLVTYSSHEPS----------------------------NPR--- 280 (712)
Q Consensus 242 ~~~~--------~~~~~~~-~-~~v~~i~~Spdg~~l~t~s~d~~~----------------------------~~~--- 280 (712)
. +. ..+..+. | ..|.+++|+|+|++|++++.+... .+.
T Consensus 96 ~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~ 174 (615)
T 1pgu_A 96 T-FDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPM 174 (615)
T ss_dssp E-EEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSC
T ss_pred C-CCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCc
Confidence 6 33 3333332 3 348888888888877777654100 000
Q ss_pred ----CCCccEEEEEEccCCceeeeccCCCc---ccccCCCCCcCCCCcCeEEecCCC-CCEEEEec-CCeEEEEEcCCce
Q 005140 281 ----DANRVVINIFDVRTGKVMRDFKGSAD---EFAVGGTGGVAGVSWPVFRWGGGK-DKYFAKLG-KNMISVYETESFT 351 (712)
Q Consensus 281 ----~~~~~~I~iwd~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~d-g~~la~~~-d~~i~iwd~~~~~ 351 (712)
...++.|++||+.+++.+..+.+|.. .+. +++|+| + +++|++++ ++.|++|++.+++
T Consensus 175 ~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~-------------~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~ 240 (615)
T 1pgu_A 175 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVR-------------DVEFSP-DSGEFVITVGSDRKISCFDGKSGE 240 (615)
T ss_dssp EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEE-------------EEEECS-TTCCEEEEEETTCCEEEEETTTCC
T ss_pred EEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEE-------------EEEECC-CCCCEEEEEeCCCeEEEEECCCCC
Confidence 11237899999999999999988876 543 799999 9 99999988 9999999999888
Q ss_pred ecccc-c---ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeee----eecceeEEECcCCCE
Q 005140 352 LIDKK-S---LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLF----SVSDCKMYWQSSGDY 423 (712)
Q Consensus 352 ~~~~~-~---~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~g~~ 423 (712)
.+... . .|...|.+++|+ ++.+|++ ++.++. |.+|++.+.+.+...... ......+.|+ ++.+
T Consensus 241 ~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~-----~~~d~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 311 (615)
T 1pgu_A 241 FLKYIEDDQEPVQGGIFALSWL-DSQKFAT-----VGADAT--IRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGR 311 (615)
T ss_dssp EEEECCBTTBCCCSCEEEEEES-SSSEEEE-----EETTSE--EEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTE
T ss_pred EeEEecccccccCCceEEEEEc-CCCEEEE-----EcCCCc--EEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCe
Confidence 77665 4 677789999999 9999998 555554 556666666555444332 2334455664 8889
Q ss_pred EEEEEcccccccccccccEEEEEEecCCcceeEEEe---------------------cCCCCceEEEEEeeCCCEEEEEE
Q 005140 424 LAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL---------------------DNKNDKIIAFAWEPKGHRFAVIH 482 (712)
Q Consensus 424 l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l---------------------~~h~~~v~~~~~sp~g~~l~~~~ 482 (712)
+++++.++....+.......+..+.....++..+.+ .+|...|.+++| +++..|++++
T Consensus 312 l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~ 390 (615)
T 1pgu_A 312 IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSIS 390 (615)
T ss_dssp EEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEE
T ss_pred EEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEe
Confidence 999888776222221111111111111111110000 234445555555 3345555555
Q ss_pred cCCCCCeEEEEEeecccc------------------------------------------------------------cC
Q 005140 483 GDSPRPDISFYSMRTAQH------------------------------------------------------------AG 502 (712)
Q Consensus 483 ~d~~~~~v~i~d~~~~~~------------------------------------------------------------~~ 502 (712)
.++ .|++|++.++.. ..
T Consensus 391 ~d~---~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~ 467 (615)
T 1pgu_A 391 WDD---TLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGN 467 (615)
T ss_dssp TTT---EEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTS
T ss_pred CCC---CEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCC
Confidence 554 455554432110 00
Q ss_pred ce--------eEE-EEeCC--CceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--c-cccceeeEEECC---
Q 005140 503 RV--------SKL-TTLKG--KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--A-EHFMATDVEWDP--- 565 (712)
Q Consensus 503 ~~--------~~~-~~~~~--~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~-~~~~v~~~~~sp--- 565 (712)
.+ ... ..+.. ..+.+++|+|+|++|++++. ||.|++||+.+++.+.. . |...|++++|+|
T Consensus 468 ~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 544 (615)
T 1pgu_A 468 TIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV---MGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEK 544 (615)
T ss_dssp CEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET---TSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC-
T ss_pred eEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCC---CCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccc
Confidence 00 011 33333 36899999999999999998 99999999999888775 3 778999999999
Q ss_pred -------CCCEEEEEEccceeccccEEEEEecC--ceeeee--cccceeeeEEecCCCCCCChhhHHHHH
Q 005140 566 -------TGRYVATAVTSVHEMENGFNIWSFNG--KLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 566 -------dg~~l~t~s~~~~~~d~~v~iw~~~g--~~~~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
+|++|++++. |+.|+||++.. ..+... |...|++++|+|++. |++++.|+.|+
T Consensus 545 ~~~~~~~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~ 608 (615)
T 1pgu_A 545 GANEEEIEEDLVATGSL-----DTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIK 608 (615)
T ss_dssp -----CCSCCEEEEEET-----TSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEE
T ss_pred cccccccCCCEEEEEcC-----CCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEE
Confidence 9999999999 99999999974 344433 678999999999999 99999887654
No 11
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-35 Score=313.11 Aligned_cols=332 Identities=15% Similarity=0.176 Sum_probs=258.6
Q ss_pred EEecCCCCCCCcccccCCCcccceEEEcCCCc-EEEEEecCc-eEEeec----ccCcc------eeeeec----------
Q 005140 195 VLWNDARHLKPEPVYKRSYWTESFVQWSPLGT-YLATVHRQG-AAVWGG----ANTFN------RLMRYA---------- 252 (712)
Q Consensus 195 ~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~-~lat~~~~~-i~iw~~----~~~~~------~~~~~~---------- 252 (712)
.+|+. ...........|...|++++|||+|+ +||+++.++ |+||++ . ++. ....+.
T Consensus 28 ~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (425)
T 1r5m_A 28 SSDDL-DGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQ-EGKKYWKLTIIAELRHPFALSASSG 105 (425)
T ss_dssp -------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC-------CEEEEEEEEEECCCCCC----
T ss_pred ccccc-hhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccC-Ccccccccccccccccccccccccc
Confidence 36666 23333333455668999999999999 999999999 889999 7 555 333332
Q ss_pred -CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCC
Q 005140 253 -HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK 330 (712)
Q Consensus 253 -~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d 330 (712)
|. .|.+++|+|+|++|++++.+ +.|++|| .+++.+..+..|...+. +++|+| +
T Consensus 106 ~~~~~v~~~~~s~~~~~l~~~~~d----------g~i~i~~-~~~~~~~~~~~~~~~v~-------------~~~~~~-~ 160 (425)
T 1r5m_A 106 KTTNQVTCLAWSHDGNSIVTGVEN----------GELRLWN-KTGALLNVLNFHRAPIV-------------SVKWNK-D 160 (425)
T ss_dssp --CBCEEEEEECTTSSEEEEEETT----------SCEEEEE-TTSCEEEEECCCCSCEE-------------EEEECT-T
T ss_pred CCCCceEEEEEcCCCCEEEEEeCC----------CeEEEEe-CCCCeeeeccCCCccEE-------------EEEECC-C
Confidence 34 59999999999999999999 9999999 68889999988877663 799999 9
Q ss_pred CCEEEEec-CCeEEEEEcCCceecccccccccC---------------eeeEEECCCCCeEEEEeecCCCCCCCeEEEEE
Q 005140 331 DKYFAKLG-KNMISVYETESFTLIDKKSLKVEN---------------VMDFSWSPTDPIISLFVPELGGGNQPARVSLV 394 (712)
Q Consensus 331 g~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~---------------v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~ 394 (712)
+++|++++ ++.|++|++.+++.+.....+... +.+++|+|++. +++ ++.++ .|.+|
T Consensus 161 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~g--~i~~~ 232 (425)
T 1r5m_A 161 GTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVI-----PGPKG--AIFVY 232 (425)
T ss_dssp SSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTE-EEE-----ECGGG--CEEEE
T ss_pred CCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCE-EEE-----EcCCC--eEEEE
Confidence 99999998 999999999988877655555544 89999999866 444 34444 46667
Q ss_pred ecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeC
Q 005140 395 QIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK 474 (712)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~ 474 (712)
++...+.+.....+......+.|+|++++|++++.++. +.+|++..... ...+.+|...|.+++|+|+
T Consensus 233 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~---------i~i~d~~~~~~---~~~~~~~~~~i~~~~~~~~ 300 (425)
T 1r5m_A 233 QITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGT---------LRIWHGGNGNS---QNCFYGHSQSIVSASWVGD 300 (425)
T ss_dssp ETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSC---------EEEECSSSBSC---SEEECCCSSCEEEEEEETT
T ss_pred EcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCE---------EEEEECCCCcc---ceEecCCCccEEEEEECCC
Confidence 77776665555555666778899999999999998876 78888765332 2445678999999999999
Q ss_pred CCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcce----
Q 005140 475 GHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELE---- 548 (712)
Q Consensus 475 g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~---- 548 (712)
+ +|++++.++ .|++||+.++. .+..+. ...+.+++|+|+|++|++++. +|.|++||+.+++
T Consensus 301 ~-~l~~~~~d~---~i~i~d~~~~~------~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~i~~~~~~~~~~~ 367 (425)
T 1r5m_A 301 D-KVISCSMDG---SVRLWSLKQNT------LLALSIVDGVPIFAGRISQDGQKYAVAFM---DGQVNVYDLKKLNSKSR 367 (425)
T ss_dssp T-EEEEEETTS---EEEEEETTTTE------EEEEEECTTCCEEEEEECTTSSEEEEEET---TSCEEEEECHHHHC---
T ss_pred C-EEEEEeCCC---cEEEEECCCCc------EeEecccCCccEEEEEEcCCCCEEEEEEC---CCeEEEEECCCCcccee
Confidence 9 999999999 99999997654 344443 457999999999999999998 9999999999776
Q ss_pred ----------------eeee--cccc--ceeeEEECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 549 ----------------TMAT--AEHF--MATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 549 ----------------~~~~--~~~~--~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
.+.. .|.. .|++++|+|+|++|++++. |+.++||++.|
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~iw~~~g 425 (425)
T 1r5m_A 368 SLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYS-----LQEGSVVAIPG 425 (425)
T ss_dssp -----------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEES-----SSCCEEEECCC
T ss_pred eeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEec-----CceEEEEeecC
Confidence 5554 3433 8999999999999999999 99999999875
No 12
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.4e-35 Score=361.18 Aligned_cols=411 Identities=14% Similarity=0.167 Sum_probs=307.1
Q ss_pred ccchhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcC--CCcEEEEEecCc-eEEeecccCcc
Q 005140 170 ENLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSP--LGTYLATVHRQG-AAVWGGANTFN 246 (712)
Q Consensus 170 ~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Sp--dg~~lat~~~~~-i~iw~~~~~~~ 246 (712)
..+.+..++|+++ .+++.+.++.+.+|+. ..++....+.+|...|.+++|+| ++.++++++.++ |++||.. ++.
T Consensus 658 ~~v~~~~~s~~~~-~l~s~~~d~~v~vwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~-~~~ 734 (1249)
T 3sfz_A 658 DEVLCCAFSSDDS-YIATCSADKKVKIWDS-ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN-QKE 734 (1249)
T ss_dssp SCEEEEEECTTSS-EEEEEETTSEEEEEET-TTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETT-SSS
T ss_pred CCEEEEEEecCCC-EEEEEeCCCeEEEEEC-CCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECC-Ccc
Confidence 3455566677665 5677778899999999 56778888999999999999999 556899999999 8899999 777
Q ss_pred eeeee-cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccc---------------
Q 005140 247 RLMRY-AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFA--------------- 309 (712)
Q Consensus 247 ~~~~~-~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~--------------- 309 (712)
.+..+ .|. .|.+++|+|+|++|++++.+ +.|++||+.++.....+........
T Consensus 735 ~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d----------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 804 (1249)
T 3sfz_A 735 CRNTMFGHTNSVNHCRFSPDDELLASCSAD----------GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCC 804 (1249)
T ss_dssp EEEEECCCSSCEEEEEECSSTTEEEEEESS----------SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCC
T ss_pred hhheecCCCCCEEEEEEecCCCEEEEEECC----------CeEEEEeCCCCcccceecccccccccCCccccccceEEEE
Confidence 66655 344 49999999999999999999 9999999988876655432110000
Q ss_pred ----------cCC-------------------CCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccccccc
Q 005140 310 ----------VGG-------------------TGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLK 359 (712)
Q Consensus 310 ----------~~~-------------------~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~ 359 (712)
.+. .+... ...+++|+| ++.++++++ ++.|.+|++.++..+.....|
T Consensus 805 ~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~--~v~~~~~sp-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h 881 (1249)
T 3sfz_A 805 SWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHS--TIQYCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGH 881 (1249)
T ss_dssp CBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSS--CCCEEEECS-STTEEEEECSSSCEEEEETTTTEEEEEECCC
T ss_pred EECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCC--ceEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCceeeecCCC
Confidence 000 00001 112689999 999999998 999999999998888777778
Q ss_pred ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEe--------------------------------------------
Q 005140 360 VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQ-------------------------------------------- 395 (712)
Q Consensus 360 ~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~-------------------------------------------- 395 (712)
...|.+++|+|+++.|++ ++.++.+++|...
T Consensus 882 ~~~v~~v~~spdg~~l~s-----~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 956 (1249)
T 3sfz_A 882 LSWVHGVMFSPDGSSFLT-----ASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI 956 (1249)
T ss_dssp SSCEEEEEECTTSSEEEE-----EETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCE
T ss_pred ccceEEEEECCCCCEEEE-----EeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceE
Confidence 888999999999999998 6777777776532
Q ss_pred ---------------------------------cCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccccc---
Q 005140 396 ---------------------------------IPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTY--- 439 (712)
Q Consensus 396 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~--- 439 (712)
..+...+.....+......+.|+|+|++|++++.++....|...
T Consensus 957 ~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1036 (1249)
T 3sfz_A 957 DYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD 1036 (1249)
T ss_dssp EEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTE
T ss_pred EEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc
Confidence 11111111112233344567888888888888777653222211
Q ss_pred ----------------------------ccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEE
Q 005140 440 ----------------------------TGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDIS 491 (712)
Q Consensus 440 ----------------------------~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~ 491 (712)
+.+.+|++..... ...+.+|.+.|.+++|+|+|++|++++.|+ .|+
T Consensus 1037 ~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~---~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~---~v~ 1110 (1249)
T 3sfz_A 1037 YVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRI---ERDFTCHQGTVLSCAISSDATKFSSTSADK---TAK 1110 (1249)
T ss_dssp EECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCC---CEEEECCSSCCCCEEECSSSSSCEEECCSS---CCC
T ss_pred eEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCce---eEEEcccCCcEEEEEECCCCCEEEEEcCCC---cEE
Confidence 1234444432221 234567899999999999999999999999 899
Q ss_pred EEEeecccccCceeEEEEeCC--CceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee-----------ccccce
Q 005140 492 FYSMRTAQHAGRVSKLTTLKG--KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-----------AEHFMA 558 (712)
Q Consensus 492 i~d~~~~~~~~~~~~~~~~~~--~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~-----------~~~~~v 558 (712)
+|++.++. .+..+.+ ..+++++|||+|++|++++. ||.|++||+.+++.+.. .|...|
T Consensus 1111 iwd~~~~~------~~~~l~~h~~~v~~~~~s~dg~~lat~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v 1181 (1249)
T 3sfz_A 1111 IWSFDLLS------PLHELKGHNGCVRCSAFSLDGILLATGDD---NGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWV 1181 (1249)
T ss_dssp EECSSSSS------CSBCCCCCSSCEEEEEECSSSSEEEEEET---TSCCCEEESSSSCCCCCCCCCC-------CCSCC
T ss_pred EEECCCcc------eeeeeccCCCcEEEEEECCCCCEEEEEeC---CCEEEEEECCCCceEEEeccccccccccccCceE
Confidence 99997654 3334443 36899999999999999998 99999999998876653 366889
Q ss_pred eeEEECCCCCEEEEEEccceeccccEEEEEec-Cceeeee--cccceeeeEEecCCCCCCChhhHHHH
Q 005140 559 TDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEI 623 (712)
Q Consensus 559 ~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i 623 (712)
++++|||||++|++++ +.+++|++. |..+... +...+.+++|+|++..|++++.++.+
T Consensus 1182 ~~l~fs~dg~~l~s~~-------g~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v 1242 (1249)
T 3sfz_A 1182 TDVCFSPDSKTLVSAG-------GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGIL 1242 (1249)
T ss_dssp CEEEECTTSSCEEEES-------SSEEEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEECTTCCE
T ss_pred EEEEECCCCCEEEECC-------CeEEEEECCCCceeeeeeccCCcccEEEECCCCCEEEEecCCcEE
Confidence 9999999999998763 699999986 5544433 55789999999999999998887654
No 13
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.5e-34 Score=299.51 Aligned_cols=281 Identities=13% Similarity=0.205 Sum_probs=226.7
Q ss_pred CcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec--CCCeeEEEecCCCCEEEEEcCCCCCCCcC
Q 005140 205 PEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA--HPQVKLIDFSPGEKYLVTYSSHEPSNPRD 281 (712)
Q Consensus 205 ~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~--~~~v~~i~~Spdg~~l~t~s~d~~~~~~~ 281 (712)
....+.+|...|++++|+|+|++||+++.|+ |+|||.. +......+. ...|.+++|+|+|.+|++++.|
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~-~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d------- 127 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSF-TTNKEHAVTMPCTWVMACAYAPSGCAIACGGLD------- 127 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TCCEEEEEECSSSCCCEEEECTTSSEEEEESTT-------
T ss_pred EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECC-CCCcceEEecCCCCEEEEEECCCCCEEEEeeCC-------
Confidence 3456789999999999999999999999999 8899988 666555543 3459999999999999999999
Q ss_pred CCccEEEEEEccCC------ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecc
Q 005140 282 ANRVVINIFDVRTG------KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLID 354 (712)
Q Consensus 282 ~~~~~I~iwd~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~ 354 (712)
+.+++|++... .....+.+|...+. +++|+| ++.+|++++ |++|++||+.+++.+.
T Consensus 128 ---~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~-------------~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~~~ 190 (354)
T 2pbi_B 128 ---NKCSVYPLTFDKNENMAAKKKSVAMHTNYLS-------------ACSFTN-SDMQILTASGDGTCALWDVESGQLLQ 190 (354)
T ss_dssp ---SEEEEEECCCCTTCCSGGGCEEEEECSSCEE-------------EEEECS-SSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred ---CCEEEEEEeccccccccccceeeeccCCcEE-------------EEEEeC-CCCEEEEEeCCCcEEEEeCCCCeEEE
Confidence 99999998643 23445555655543 689999 999999998 9999999999988877
Q ss_pred cccccccCeeeEEECCC--CCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccc
Q 005140 355 KKSLKVENVMDFSWSPT--DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYT 432 (712)
Q Consensus 355 ~~~~~~~~v~~~~~sp~--~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~ 432 (712)
....|...|.+++|+|+ +++|++ ++.|+.+++|. +.+.+
T Consensus 191 ~~~~h~~~v~~~~~~~~~~g~~l~s-----gs~Dg~v~~wd--~~~~~-------------------------------- 231 (354)
T 2pbi_B 191 SFHGHGADVLCLDLAPSETGNTFVS-----GGCDKKAMVWD--MRSGQ-------------------------------- 231 (354)
T ss_dssp EEECCSSCEEEEEECCCSSCCEEEE-----EETTSCEEEEE--TTTCC--------------------------------
T ss_pred EEcCCCCCeEEEEEEeCCCCCEEEE-----EeCCCeEEEEE--CCCCc--------------------------------
Confidence 77677778888888774 567777 55666655443 21110
Q ss_pred cccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC
Q 005140 433 KTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG 512 (712)
Q Consensus 433 ~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~ 512 (712)
....+.+|...|.+++|+|++++|++++.|+ .|++||++... .+..+..
T Consensus 232 ----------------------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~---~v~lwd~~~~~------~~~~~~~ 280 (354)
T 2pbi_B 232 ----------------------CVQAFETHESDVNSVRYYPSGDAFASGSDDA---TCRLYDLRADR------EVAIYSK 280 (354)
T ss_dssp ----------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTTE------EEEEECC
T ss_pred ----------------------EEEEecCCCCCeEEEEEeCCCCEEEEEeCCC---eEEEEECCCCc------EEEEEcC
Confidence 0123447889999999999999999999999 99999997643 2333322
Q ss_pred ----CceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEE
Q 005140 513 ----KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNI 586 (712)
Q Consensus 513 ----~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~i 586 (712)
..+.+++|+|+|++|++++. |+.|++||+.+++.+.. .|...|++++|+|+|++|++++. |+.++|
T Consensus 281 ~~~~~~~~~~~~s~~g~~l~~g~~---d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~-----D~~v~v 352 (354)
T 2pbi_B 281 ESIIFGASSVDFSLSGRLLFAGYN---DYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSW-----DHTLRV 352 (354)
T ss_dssp TTCCSCEEEEEECTTSSEEEEEET---TSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEET-----TSEEEE
T ss_pred CCcccceeEEEEeCCCCEEEEEEC---CCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcC-----CCCEEe
Confidence 25789999999999999998 99999999988876654 67789999999999999999999 999999
Q ss_pred EE
Q 005140 587 WS 588 (712)
Q Consensus 587 w~ 588 (712)
|+
T Consensus 353 W~ 354 (354)
T 2pbi_B 353 WA 354 (354)
T ss_dssp EC
T ss_pred cC
Confidence 95
No 14
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=3e-35 Score=309.80 Aligned_cols=289 Identities=16% Similarity=0.249 Sum_probs=223.9
Q ss_pred CCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee--cCCCeeEEEecCCCCEEEEEcCCCCCC
Q 005140 202 HLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY--AHPQVKLIDFSPGEKYLVTYSSHEPSN 278 (712)
Q Consensus 202 ~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~--~~~~v~~i~~Spdg~~l~t~s~d~~~~ 278 (712)
.......+.+|...|++++|||+|++||+++.|+ |+|||.. +...+..+ +...|.+++|+|+|++|++++.|
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~-~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d---- 129 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNAL-TSQKTHAIKLHCPWVMECAFAPNGQSVACGGLD---- 129 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETT-TTEEEEEEECCCTTCCCCEECTTSSEEEECCSS----
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCccceEEecCCCCEEEEEECCCCCEEEEeeCC----
Confidence 3444567899999999999999999999999999 8899998 66666555 33459999999999999999999
Q ss_pred CcCCCccEEEEEEccCCc-------eeeeccCCCcccccCCCCCcCCCCcCeEEecCCC-CCEEEEec-CCeEEEEEcCC
Q 005140 279 PRDANRVVINIFDVRTGK-------VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK-DKYFAKLG-KNMISVYETES 349 (712)
Q Consensus 279 ~~~~~~~~I~iwd~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d-g~~la~~~-d~~i~iwd~~~ 349 (712)
+.|++|++.+.. ..+.+.+|...+. ++.|+| + +..|++++ |++|++||+.+
T Consensus 130 ------~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~-------------~~~~~~-~~~~~l~s~s~D~~i~~wd~~~ 189 (380)
T 3iz6_a 130 ------SACSIFNLSSQADRDGNMPVSRVLTGHKGYAS-------------SCQYVP-DQETRLITGSGDQTCVLWDVTT 189 (380)
T ss_dssp ------SCCEEEECCCCSSCCCSSTTCCBCCCCSSCCC-------------CCBCCS-SSSSCEEEECTTSCEEEECTTT
T ss_pred ------CcEEEEECCCCccccCCccceeeccCCCcceE-------------EEEEec-CCCCEEEEECCCCcEEEEEcCC
Confidence 999999986532 3445666665542 578888 6 45688888 99999999998
Q ss_pred ceecccc-----cccccCeeeEEECC-CCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCE
Q 005140 350 FTLIDKK-----SLKVENVMDFSWSP-TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDY 423 (712)
Q Consensus 350 ~~~~~~~-----~~~~~~v~~~~~sp-~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~ 423 (712)
+..+... ..|...|.+++|+| ++.+|++ ++.|+.+++|
T Consensus 190 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s-----gs~D~~v~~w------------------------------- 233 (380)
T 3iz6_a 190 GQRISIFGSEFPSGHTADVLSLSINSLNANMFIS-----GSCDTTVRLW------------------------------- 233 (380)
T ss_dssp CCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEE-----EETTSCEEEE-------------------------------
T ss_pred CcEEEEeecccCCCCccCeEEEEeecCCCCEEEE-----EECCCeEEEE-------------------------------
Confidence 7765332 23445566777655 5556665 5555554443
Q ss_pred EEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCc
Q 005140 424 LAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGR 503 (712)
Q Consensus 424 l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~ 503 (712)
+++..... ...+.+|.+.|.+++|+|+|++|++++.|+ .|++||++++.
T Consensus 234 ----------------------d~~~~~~~--~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~---~i~lwd~~~~~---- 282 (380)
T 3iz6_a 234 ----------------------DLRITSRA--VRTYHGHEGDINSVKFFPDGQRFGTGSDDG---TCRLFDMRTGH---- 282 (380)
T ss_dssp ----------------------ETTTTCCC--CEEECCCSSCCCEEEECTTSSEEEEECSSS---CEEEEETTTTE----
T ss_pred ----------------------ECCCCCcc--eEEECCcCCCeEEEEEecCCCeEEEEcCCC---eEEEEECCCCc----
Confidence 33221111 133557899999999999999999999999 99999997654
Q ss_pred eeEEEEeCCC---------ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee------ccccceeeEEECCCCC
Q 005140 504 VSKLTTLKGK---------QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT------AEHFMATDVEWDPTGR 568 (712)
Q Consensus 504 ~~~~~~~~~~---------~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~------~~~~~v~~~~~spdg~ 568 (712)
.+..+..+ .+++++|+|+|++|++++. ||.|++||+..++.+.. .|...|++++|+|+|+
T Consensus 283 --~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 357 (380)
T 3iz6_a 283 --QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS---NGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGS 357 (380)
T ss_dssp --EEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT---TSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSS
T ss_pred --EEEEecccccccccccCceEEEEECCCCCEEEEEEC---CCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCC
Confidence 33333221 3789999999999999998 99999999987766543 5678899999999999
Q ss_pred EEEEEEccceeccccEEEEEecCc
Q 005140 569 YVATAVTSVHEMENGFNIWSFNGK 592 (712)
Q Consensus 569 ~l~t~s~~~~~~d~~v~iw~~~g~ 592 (712)
+|++++. |+.++||++.+.
T Consensus 358 ~l~sgs~-----D~~i~iW~~~~~ 376 (380)
T 3iz6_a 358 ALCTGSW-----DKNLKIWAFSGH 376 (380)
T ss_dssp EEEEECT-----TSCEEEEECCSS
T ss_pred EEEEeeC-----CCCEEEEecCCC
Confidence 9999999 999999999864
No 15
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=6.8e-34 Score=295.27 Aligned_cols=292 Identities=15% Similarity=0.298 Sum_probs=225.5
Q ss_pred cccccCCCc-ccceEEEcCCCcEEEEEecCc-eEEeecccCcceee--e--ecCC-CeeEEEecCCCCEEEEEcCCCCCC
Q 005140 206 EPVYKRSYW-TESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLM--R--YAHP-QVKLIDFSPGEKYLVTYSSHEPSN 278 (712)
Q Consensus 206 ~~~~~~~~~-~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~--~--~~~~-~v~~i~~Spdg~~l~t~s~d~~~~ 278 (712)
...+++|.. .|.+++|||+|++||+++.|+ |+||+.. +..... . ..|. .|.+++|||+|++|++++.|
T Consensus 8 ~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~-~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D---- 82 (345)
T 3fm0_A 8 LGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTE-GDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD---- 82 (345)
T ss_dssp EEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEE-TTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT----
T ss_pred eeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcC-CCcceeeeeeccccCCcEEEEEECCCCCEEEEEECC----
Confidence 345678887 899999999999999999999 8899998 443221 1 2344 49999999999999999999
Q ss_pred CcCCCccEEEEEEccCCc--eeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCce---e
Q 005140 279 PRDANRVVINIFDVRTGK--VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT---L 352 (712)
Q Consensus 279 ~~~~~~~~I~iwd~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~---~ 352 (712)
++|+||++.++. .+..+.+|...+. +++|+| ++++|++++ |++|++|++.++. .
T Consensus 83 ------~~v~iw~~~~~~~~~~~~~~~h~~~v~-------------~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~ 142 (345)
T 3fm0_A 83 ------ATTCIWKKNQDDFECVTTLEGHENEVK-------------SVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYEC 142 (345)
T ss_dssp ------SCEEEEEECCC-EEEEEEECCCSSCEE-------------EEEECT-TSSEEEEEETTSCEEEEEECTTSCEEE
T ss_pred ------CcEEEEEccCCCeEEEEEccCCCCCce-------------EEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEE
Confidence 999999987764 5778888887764 799999 999999999 9999999997653 2
Q ss_pred cccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccc
Q 005140 353 IDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYT 432 (712)
Q Consensus 353 ~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~ 432 (712)
+.....|...|.+++|+|++.+|++ ++.++.+++|....
T Consensus 143 ~~~~~~h~~~v~~~~~~p~~~~l~s-----~s~d~~i~~w~~~~------------------------------------ 181 (345)
T 3fm0_A 143 VSVLNSHTQDVKHVVWHPSQELLAS-----ASYDDTVKLYREEE------------------------------------ 181 (345)
T ss_dssp EEEECCCCSCEEEEEECSSSSCEEE-----EETTSCEEEEEEET------------------------------------
T ss_pred EEEecCcCCCeEEEEECCCCCEEEE-----EeCCCcEEEEEecC------------------------------------
Confidence 3333456667888888888888887 66676666554321
Q ss_pred cccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeeccccc---------Cc
Q 005140 433 KTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHA---------GR 503 (712)
Q Consensus 433 ~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~---------~~ 503 (712)
.. ......+.+|...|.+++|+|+|++|++++.|+ .|++|+....... ..
T Consensus 182 -----------------~~-~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~---~v~iW~~~~~~~~~~~~~~~~~~~ 240 (345)
T 3fm0_A 182 -----------------DD-WVCCATLEGHESTVWSLAFDPSGQRLASCSDDR---TVRIWRQYLPGNEQGVACSGSDPS 240 (345)
T ss_dssp -----------------TE-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTS---CEEEEEEECTTCTTCCCCC---CE
T ss_pred -----------------CC-EEEEEEecCCCCceEEEEECCCCCEEEEEeCCC---eEEEeccccCCCCccceeeccCCc
Confidence 00 011134558899999999999999999999999 9999997532211 11
Q ss_pred eeEEEEeC---CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcce--------ee---eeccccceeeEEECCCCC-
Q 005140 504 VSKLTTLK---GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELE--------TM---ATAEHFMATDVEWDPTGR- 568 (712)
Q Consensus 504 ~~~~~~~~---~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~--------~~---~~~~~~~v~~~~~spdg~- 568 (712)
...+..+. ...+.+++|+|++..|++++. |+.|++|+..... .. ...|...|++++|+|++.
T Consensus 241 ~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~ 317 (345)
T 3fm0_A 241 WKCICTLSGFHSRTIYDIAWCQLTGALATACG---DDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPG 317 (345)
T ss_dssp EEEEEEECSSCSSCEEEEEECTTTCCEEEEET---TSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTT
T ss_pred cceeEEecCCCCCcEEEEEEecCCCEEEEEeC---CCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCce
Confidence 22334443 336899999999999999998 9999999987432 11 125778999999999984
Q ss_pred EEEEEEccceeccccEEEEEecCc
Q 005140 569 YVATAVTSVHEMENGFNIWSFNGK 592 (712)
Q Consensus 569 ~l~t~s~~~~~~d~~v~iw~~~g~ 592 (712)
+||+++. |+.|+||++...
T Consensus 318 ~laS~s~-----Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 318 LLASCSD-----DGEVAFWKYQRP 336 (345)
T ss_dssp EEEEEET-----TSCEEEEEECC-
T ss_pred EEEEcCC-----CCcEEEEEecCC
Confidence 9999999 999999998743
No 16
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.2e-34 Score=300.20 Aligned_cols=301 Identities=11% Similarity=0.124 Sum_probs=209.0
Q ss_pred ceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEec------Cc-eEEeecccCccee-----ee
Q 005140 183 DQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHR------QG-AAVWGGANTFNRL-----MR 250 (712)
Q Consensus 183 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~------~~-i~iw~~~~~~~~~-----~~ 250 (712)
..|+...++.....|+.+.. ....|...|++++|||||++||+++. ++ +.+|+.. +.... ..
T Consensus 17 ~~~~~~~g~~~~~~w~~p~~-----~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~-~~~~~~~~~~~~ 90 (357)
T 4g56_B 17 NLYFQSNGSSKGSAWGRPVT-----APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDP-EGAPNESLCTAG 90 (357)
T ss_dssp ----------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSC-C---CGGGCSEE
T ss_pred ceEEecCCCccccccCCCCC-----CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECC-CCCcceeEeccc
Confidence 34555666667778988422 23578999999999999999999997 44 6677765 33322 12
Q ss_pred ecC-CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeec----cCCCcccccCCCCCcCCCCcCeEE
Q 005140 251 YAH-PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDF----KGSADEFAVGGTGGVAGVSWPVFR 325 (712)
Q Consensus 251 ~~~-~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 325 (712)
..| ..|.+++|+|++++| +++.+ ++|+|||+.+++.+... .+|...+. +++
T Consensus 91 ~~~~~~V~~~~~s~d~~~l-~~s~d----------g~v~lWd~~~~~~~~~~~~~~~~h~~~V~-------------~v~ 146 (357)
T 4g56_B 91 VQTEAGVTDVAWVSEKGIL-VASDS----------GAVELWEILEKESLLVNKFAKYEHDDIVK-------------TLS 146 (357)
T ss_dssp EECSSCEEEEEEETTTEEE-EEETT----------SCEEEC--------CCCCEEECCCSSCEE-------------EEE
T ss_pred CCCCCCEEEEEEcCCCCEE-EEECC----------CEEEEeeccccceeEEEeeccCCCCCCEE-------------EEE
Confidence 234 459999999998755 56778 89999999888755432 35555543 799
Q ss_pred ecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCC-eEEEEeecCCCCCCCeEEEEEecCCcccee
Q 005140 326 WGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDP-IISLFVPELGGGNQPARVSLVQIPSKEELR 403 (712)
Q Consensus 326 ~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~-~la~~~~~~~~~~~~~~i~~~~~~~~~~~~ 403 (712)
|+| ++++|++++ |+.|++||+.+++.+.....|...|.+++|+|++. .+++ ++.++.+++| ++.+.+.+.
T Consensus 147 ~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s-----~~~dg~v~~w--d~~~~~~~~ 218 (357)
T 4g56_B 147 VFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLS-----CGEDGRILLW--DTRKPKPAT 218 (357)
T ss_dssp ECS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEE-----EETTSCEEEC--CTTSSSCBC
T ss_pred ECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeee-----eccCCceEEE--ECCCCceee
Confidence 999 999999999 99999999999988877777888899999999975 5666 5566665554 332221110
Q ss_pred eeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeC-CCEEEEEE
Q 005140 404 QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK-GHRFAVIH 482 (712)
Q Consensus 404 ~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~-g~~l~~~~ 482 (712)
.+.+..|...+.+++|+|+ +.+|++++
T Consensus 219 ----------------------------------------------------~~~~~~~~~~v~~v~~sp~~~~~la~g~ 246 (357)
T 4g56_B 219 ----------------------------------------------------RIDFCASDTIPTSVTWHPEKDDTFACGD 246 (357)
T ss_dssp ----------------------------------------------------BCCCTTCCSCEEEEEECTTSTTEEEEEE
T ss_pred ----------------------------------------------------eeeeccccccccchhhhhcccceEEEee
Confidence 0112245678899999997 46788888
Q ss_pred cCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCC-CeEEEEeccCCCceEEEEECCcceeeee-ccccce
Q 005140 483 GDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSG-RFIVLAGLKGFNGQLEFYNVDELETMAT-AEHFMA 558 (712)
Q Consensus 483 ~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg-~~l~~~~~~~~dg~v~iwd~~~~~~~~~-~~~~~v 558 (712)
.|+ .|++||++++.. +..+. ...|++++|+|+| ++|++++. |+.|+|||+++++++.. .|...|
T Consensus 247 ~d~---~i~~wd~~~~~~------~~~~~~~~~~v~~l~~sp~~~~~lasgs~---D~~i~iwd~~~~~~~~~~~H~~~V 314 (357)
T 4g56_B 247 ETG---NVSLVNIKNPDS------AQTSAVHSQNITGLAYSYHSSPFLASISE---DCTVAVLDADFSEVFRDLSHRDFV 314 (357)
T ss_dssp SSS---CEEEEESSCGGG------CEEECCCSSCEEEEEECSSSSCCEEEEET---TSCEEEECTTSCEEEEECCCSSCE
T ss_pred ccc---ceeEEECCCCcE------eEEEeccceeEEEEEEcCCCCCEEEEEeC---CCEEEEEECCCCcEeEECCCCCCE
Confidence 898 899999977552 33443 4479999999997 57888988 99999999999888765 567899
Q ss_pred eeEEECC-CCCEEEEEEccceeccccEEEEEec
Q 005140 559 TDVEWDP-TGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 559 ~~~~~sp-dg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
++++|+| ++++|++++. |+.|++|++.
T Consensus 315 ~~vafsP~d~~~l~s~s~-----Dg~v~iW~~~ 342 (357)
T 4g56_B 315 TGVAWSPLDHSKFTTVGW-----DHKVLHHHLP 342 (357)
T ss_dssp EEEEECSSSTTEEEEEET-----TSCEEEEECC
T ss_pred EEEEEeCCCCCEEEEEcC-----CCeEEEEECC
Confidence 9999999 8999999999 9999999986
No 17
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-35 Score=337.88 Aligned_cols=362 Identities=10% Similarity=0.111 Sum_probs=261.4
Q ss_pred ccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccE
Q 005140 209 YKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVV 286 (712)
Q Consensus 209 ~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~ 286 (712)
..+|...|++++|||+|++||+|+.++ |+||+.. +...+..+.|.. |.+++|+| |++|++++.| ++
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~-~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D----------~~ 80 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQ-QVEVVIKLEDRSAIKEMRFVK-GIYLVVINAK----------DT 80 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECST-TCEEEEECSSCCCEEEEEEET-TTEEEEEETT----------CE
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCC-CcEEEEEcCCCCCEEEEEEcC-CCEEEEEECc----------Ce
Confidence 357889999999999999999999999 8899998 676666666554 99999999 8899999999 99
Q ss_pred EEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceec-----------c
Q 005140 287 INIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLI-----------D 354 (712)
Q Consensus 287 I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~-----------~ 354 (712)
|+|||+.+++.+..+..+ ..+. +++|+| ++++|++++ ||.|++||+.++.+. .
T Consensus 81 v~lWd~~~~~~~~~~~~~-~~V~-------------~v~~sp-~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~ 145 (902)
T 2oaj_A 81 VYVLSLYSQKVLTTVFVP-GKIT-------------SIDTDA-SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSF 145 (902)
T ss_dssp EEEEETTTCSEEEEEECS-SCEE-------------EEECCT-TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHT
T ss_pred EEEEECCCCcEEEEEcCC-CCEE-------------EEEECC-CCCEEEEEcCCCcEEEEECCCCccccceecccccccc
Confidence 999999999998888633 3332 799999 999999999 999999999987653 1
Q ss_pred cccccccCeeeEEECCCC-CeEEEEeecCCCCCCCeEEEEEecCCccceeeeeee------------------eecceeE
Q 005140 355 KKSLKVENVMDFSWSPTD-PIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLF------------------SVSDCKM 415 (712)
Q Consensus 355 ~~~~~~~~v~~~~~sp~~-~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------------------~~~~~~~ 415 (712)
....|...|.+++|+|++ ..|++ ++.++. | +|++.+.+.+.....+ ......+
T Consensus 146 ~~~~h~~~V~sl~~sp~~~~~l~~-----g~~dg~--v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v 217 (902)
T 2oaj_A 146 FPAARLSPIVSIQWNPRDIGTVLI-----SYEYVT--L-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQS 217 (902)
T ss_dssp CSSSCCCCCCEEEEETTEEEEEEE-----ECSSCE--E-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEE
T ss_pred ccccCCCCeEEEEEccCCCCEEEE-----EeCCCc--E-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEE
Confidence 223466789999999974 66776 555544 5 7777766554433222 2346678
Q ss_pred EECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEe---c-------------CCCCceEEEEEee----CC
Q 005140 416 YWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL---D-------------NKNDKIIAFAWEP----KG 475 (712)
Q Consensus 416 ~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l---~-------------~h~~~v~~~~~sp----~g 475 (712)
.|+|+|.+|++++.++. +.+|++... ..+....+ . .|...|.+++|+| ++
T Consensus 218 ~fspdg~~lasgs~Dg~---------i~lWd~~~g-~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~ 287 (902)
T 2oaj_A 218 LYHPNSLHIITIHEDNS---------LVFWDANSG-HMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEY 287 (902)
T ss_dssp EECTTSSEEEEEETTCC---------EEEEETTTC-CEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTE
T ss_pred EEcCCCCEEEEEECCCe---------EEEEECCCC-cEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCC
Confidence 99999999999999987 788887543 22111111 0 1345788888865 32
Q ss_pred -CEEEEEEcCCC--CCeEEEEEeecc----------------------------c-------------------cc----
Q 005140 476 -HRFAVIHGDSP--RPDISFYSMRTA----------------------------Q-------------------HA---- 501 (712)
Q Consensus 476 -~~l~~~~~d~~--~~~v~i~d~~~~----------------------------~-------------------~~---- 501 (712)
..|++++.+.. ...+.+|++... . ..
T Consensus 288 ~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l 367 (902)
T 2oaj_A 288 TSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLI 367 (902)
T ss_dssp EEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEE
T ss_pred CEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeE
Confidence 34555544321 114555553100 0 00
Q ss_pred ------CceeEEE-------------------------------------------------EeCCC--ceeEEEEccCC
Q 005140 502 ------GRVSKLT-------------------------------------------------TLKGK--QANALFWSPSG 524 (712)
Q Consensus 502 ------~~~~~~~-------------------------------------------------~~~~~--~v~~l~~spdg 524 (712)
..+.... .+.++ .+..++|+|+|
T Consensus 368 ~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg 447 (902)
T 2oaj_A 368 LLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYG 447 (902)
T ss_dssp EEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEE
T ss_pred EEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccC
Confidence 0000000 00111 12345678999
Q ss_pred CeEEEEeccCCCceEEEEECCcceeee-------------eccccceeeEEECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 525 RFIVLAGLKGFNGQLEFYNVDELETMA-------------TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 525 ~~l~~~~~~~~dg~v~iwd~~~~~~~~-------------~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
++|++++. |++|++||+.++.+.. ..|...|++++|||||++||+++. |+.|+||++.+
T Consensus 448 ~~laSgs~---DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~-----DgtV~lwd~~~ 519 (902)
T 2oaj_A 448 TAFITGHS---NGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIE-----TGDVVLFKYEV 519 (902)
T ss_dssp EEEEEEET---TSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEET-----TSCEEEEEEEE
T ss_pred cEEEEecC---CCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEec-----CcEEEEEEecC
Confidence 99999998 9999999998764321 156678999999999999999999 99999999974
Q ss_pred ce----------------------------------------------ee--eecccceeeeEEecCCCCCCChhhHHHH
Q 005140 592 KL----------------------------------------------LY--RTLKDHFFQFLWRPRPPSFLTPEKEEEI 623 (712)
Q Consensus 592 ~~----------------------------------------------~~--~~~~~~i~~~~w~p~~~~l~s~~~d~~i 623 (712)
.. +. ..|.+.|++++|+|+| +|++++.|+.|
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv 598 (902)
T 2oaj_A 520 NQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSL 598 (902)
T ss_dssp CCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEE
T ss_pred ccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcE
Confidence 31 22 2267899999999999 99999999887
Q ss_pred H
Q 005140 624 A 624 (712)
Q Consensus 624 ~ 624 (712)
+
T Consensus 599 ~ 599 (902)
T 2oaj_A 599 M 599 (902)
T ss_dssp E
T ss_pred E
Confidence 5
No 18
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.1e-33 Score=288.23 Aligned_cols=285 Identities=16% Similarity=0.230 Sum_probs=229.6
Q ss_pred CCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-C-CCeeEEEecCCCCEEEEEcCCCCCCCc
Q 005140 204 KPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-H-PQVKLIDFSPGEKYLVTYSSHEPSNPR 280 (712)
Q Consensus 204 ~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~-~~v~~i~~Spdg~~l~t~s~d~~~~~~ 280 (712)
.....|.+|...|++++|||+|++||+++.++ |+|||.. +...+..+. | ..|.+++|+|++++|++++.|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d------ 76 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYE-TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDD------ 76 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETT-TTEEEEEEECCSSCEEEEEEEGGGTEEEEEETT------
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECC-CCceeEEeeccCCcEEEEEEeCCCCEEEEECCC------
Confidence 45567889999999999999999999999999 8899999 777666664 3 359999999999999999999
Q ss_pred CCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCce-ecccccc
Q 005140 281 DANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT-LIDKKSL 358 (712)
Q Consensus 281 ~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~-~~~~~~~ 358 (712)
++|++||+.+++.+..+.+|...+. +++|+| ++++|++++ |++|++||+.++. .......
T Consensus 77 ----~~i~vwd~~~~~~~~~~~~h~~~v~-------------~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~ 138 (304)
T 2ynn_A 77 ----FRIRVFNYNTGEKVVDFEAHPDYIR-------------SIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEG 138 (304)
T ss_dssp ----SEEEEEETTTCCEEEEEECCSSCEE-------------EEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECC
T ss_pred ----CEEEEEECCCCcEEEEEeCCCCcEE-------------EEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhcc
Confidence 9999999999999999999988764 799999 999999999 9999999998763 3334456
Q ss_pred cccCeeeEEECC-CCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccc
Q 005140 359 KVENVMDFSWSP-TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKS 437 (712)
Q Consensus 359 ~~~~v~~~~~sp-~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~ 437 (712)
|...|.+++|+| ++..|++ ++.|+.+++|. +......
T Consensus 139 h~~~v~~v~~~p~~~~~l~s-----gs~D~~v~iwd--~~~~~~~----------------------------------- 176 (304)
T 2ynn_A 139 HEHFVMCVAFNPKDPSTFAS-----GCLDRTVKVWS--LGQSTPN----------------------------------- 176 (304)
T ss_dssp CCSCEEEEEECTTCTTEEEE-----EETTSEEEEEE--TTCSSCS-----------------------------------
T ss_pred cCCcEEEEEECCCCCCEEEE-----EeCCCeEEEEE--CCCCCcc-----------------------------------
Confidence 777799999999 5677887 66777666553 2211100
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCCceEEEEEee--CCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--
Q 005140 438 TYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP--KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK-- 513 (712)
Q Consensus 438 ~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp--~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-- 513 (712)
. ....+|...+..++|+| ++.+|++++.|+ .|++||++++. .+..+.+|
T Consensus 177 -----------------~-~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~---~i~iWd~~~~~------~~~~~~~h~~ 229 (304)
T 2ynn_A 177 -----------------F-TLTTGQERGVNYVDYYPLPDKPYMITASDDL---TIKIWDYQTKS------CVATLEGHMS 229 (304)
T ss_dssp -----------------E-EEECCCTTCEEEEEECCSTTCCEEEEEETTS---EEEEEETTTTE------EEEEEECCSS
T ss_pred -----------------c-eeccCCcCcEEEEEEEEcCCCCEEEEEcCCC---eEEEEeCCCCc------cceeeCCCCC
Confidence 0 00114456788888887 778999999999 99999997654 55666554
Q ss_pred ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCC--EEEEEEccceeccccEEEEEe
Q 005140 514 QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGR--YVATAVTSVHEMENGFNIWSF 589 (712)
Q Consensus 514 ~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~--~l~t~s~~~~~~d~~v~iw~~ 589 (712)
.+.+++|+|++++|++++. ||.|++||+.+++++.+ .+...+.+++|+|+|+ ++++++ ++++.+|++
T Consensus 230 ~v~~~~~~p~~~~l~s~s~---Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~------~~g~~~~~~ 300 (304)
T 2ynn_A 230 NVSFAVFHPTLPIIISGSE---DGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF------DNGFTVLSL 300 (304)
T ss_dssp CEEEEEECSSSSEEEEEET---TSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEE------TTEEEEEEC
T ss_pred CEEEEEECCCCCEEEEEcC---CCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEec------CCceEEEEe
Confidence 7899999999999999998 99999999999888776 4557899999999986 466665 477888887
Q ss_pred cC
Q 005140 590 NG 591 (712)
Q Consensus 590 ~g 591 (712)
..
T Consensus 301 ~~ 302 (304)
T 2ynn_A 301 GN 302 (304)
T ss_dssp C-
T ss_pred cc
Confidence 54
No 19
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=7.3e-34 Score=293.76 Aligned_cols=317 Identities=10% Similarity=0.104 Sum_probs=250.5
Q ss_pred CCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEE
Q 005140 212 SYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINI 289 (712)
Q Consensus 212 ~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~i 289 (712)
|...+.+++|||||+++|++..++ +.+|........+....|.. |.+++|+|++++|++++ + +.|++
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-d----------g~i~i 76 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-K----------GCVKV 76 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-B----------SEEEE
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-C----------CeEEE
Confidence 346789999999999999888766 66776653455555566665 99999999999999998 8 89999
Q ss_pred EEccCCceeeecc-----CCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCce--eccccccccc
Q 005140 290 FDVRTGKVMRDFK-----GSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT--LIDKKSLKVE 361 (712)
Q Consensus 290 wd~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~--~~~~~~~~~~ 361 (712)
||+.++.....+. .|...+. +++|+| ++++|++++ ++.|++|++.++. .......+..
T Consensus 77 w~~~~~~~~~~~~~~~~~~~~~~v~-------------~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 142 (337)
T 1gxr_A 77 WDISHPGNKSPVSQLDCLNRDNYIR-------------SCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP 142 (337)
T ss_dssp EETTSTTCCSCSEEEECSCTTSBEE-------------EEEECT-TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSS
T ss_pred EECCCCCceeeeecccccCCCCcEE-------------EEEEcC-CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCC
Confidence 9998776433332 4444432 799999 999999988 9999999999776 3333445666
Q ss_pred CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccccccc
Q 005140 362 NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTG 441 (712)
Q Consensus 362 ~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~ 441 (712)
.+.+++|+|++++|++ ++.++. |.+|++.+.+.+.....+......+.|+|+|.+|++++.++.
T Consensus 143 ~i~~~~~~~~~~~l~~-----~~~dg~--v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~--------- 206 (337)
T 1gxr_A 143 ACYALAISPDSKVCFS-----CCSDGN--IAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT--------- 206 (337)
T ss_dssp CEEEEEECTTSSEEEE-----EETTSC--EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE---------
T ss_pred ceEEEEECCCCCEEEE-----EeCCCc--EEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCc---------
Confidence 7999999999999998 555555 556677666666555555666778899999999999998876
Q ss_pred EEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEc
Q 005140 442 FELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWS 521 (712)
Q Consensus 442 ~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~s 521 (712)
+.+|++.... ... .+ .|...+.+++|+|++++|++++.++ .|++|++.++.. .........+.+++|+
T Consensus 207 i~~~d~~~~~-~~~--~~-~~~~~v~~~~~s~~~~~l~~~~~~~---~i~~~~~~~~~~-----~~~~~~~~~v~~~~~~ 274 (337)
T 1gxr_A 207 VRSWDLREGR-QLQ--QH-DFTSQIFSLGYCPTGEWLAVGMESS---NVEVLHVNKPDK-----YQLHLHESCVLSLKFA 274 (337)
T ss_dssp EEEEETTTTE-EEE--EE-ECSSCEEEEEECTTSSEEEEEETTS---CEEEEETTSSCE-----EEECCCSSCEEEEEEC
T ss_pred EEEEECCCCc-eEe--ee-cCCCceEEEEECCCCCEEEEEcCCC---cEEEEECCCCCe-----EEEcCCccceeEEEEC
Confidence 7888876432 111 22 4688999999999999999999998 899999976431 1111224479999999
Q ss_pred cCCCeEEEEeccCCCceEEEEECCcceeeee-ccccceeeEEECCCCCEEEEEEccceeccccEEEEEe
Q 005140 522 PSGRFIVLAGLKGFNGQLEFYNVDELETMAT-AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSF 589 (712)
Q Consensus 522 pdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~-~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~ 589 (712)
|+|++|++++. +|.|++|++.+++.+.. .+...+++++|+|+|++|++++. |+.+++|++
T Consensus 275 ~~~~~l~~~~~---dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~iw~~ 335 (337)
T 1gxr_A 275 YCGKWFVSTGK---DNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSG-----DKKATVYEV 335 (337)
T ss_dssp TTSSEEEEEET---TSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEET-----TSCEEEEEE
T ss_pred CCCCEEEEecC---CCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecC-----CCeEEEEEE
Confidence 99999999998 99999999998877754 56688999999999999999999 999999996
No 20
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.2e-33 Score=287.93 Aligned_cols=286 Identities=14% Similarity=0.201 Sum_probs=220.6
Q ss_pred ccccCCCcccceEEEcCCC-cEEEEEecCc-eEEeecccCc----ceeeee-cCC-CeeEEEecCCCCEEEEEcCCCCCC
Q 005140 207 PVYKRSYWTESFVQWSPLG-TYLATVHRQG-AAVWGGANTF----NRLMRY-AHP-QVKLIDFSPGEKYLVTYSSHEPSN 278 (712)
Q Consensus 207 ~~~~~~~~~v~~v~~Spdg-~~lat~~~~~-i~iw~~~~~~----~~~~~~-~~~-~v~~i~~Spdg~~l~t~s~d~~~~ 278 (712)
..+.+|...|++++|+|++ ++|++++.|+ |++|+..+.. ..+..+ .|. .|.+++|+|+|++|++++.|
T Consensus 11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D---- 86 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD---- 86 (319)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT----
T ss_pred EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC----
Confidence 3578999999999999965 8999999999 8899986221 223334 344 59999999999999999999
Q ss_pred CcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccccc
Q 005140 279 PRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKS 357 (712)
Q Consensus 279 ~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~ 357 (712)
++|+|||+.+++.++.+.+|...+. +++|+| ++.+|++++ |++|++|++... .+....
T Consensus 87 ------~~v~~wd~~~~~~~~~~~~h~~~v~-------------~~~~~~-~~~~l~s~s~D~~i~vwd~~~~-~~~~~~ 145 (319)
T 3frx_A 87 ------KTLRLWDVATGETYQRFVGHKSDVM-------------SVDIDK-KASMIISGSRDKTIKVWTIKGQ-CLATLL 145 (319)
T ss_dssp ------SEEEEEETTTTEEEEEEECCSSCEE-------------EEEECT-TSCEEEEEETTSCEEEEETTSC-EEEEEC
T ss_pred ------CEEEEEECCCCCeeEEEccCCCcEE-------------EEEEcC-CCCEEEEEeCCCeEEEEECCCC-eEEEEe
Confidence 9999999999999999999988764 799999 999999999 999999999743 333444
Q ss_pred ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccc
Q 005140 358 LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKS 437 (712)
Q Consensus 358 ~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~ 437 (712)
.|...|.++.|+|.... .+++..+++++.++.
T Consensus 146 ~h~~~v~~~~~~~~~~~-------------------------------------------~~~~~~l~s~~~d~~----- 177 (319)
T 3frx_A 146 GHNDWVSQVRVVPNEKA-------------------------------------------DDDSVTIISAGNDKM----- 177 (319)
T ss_dssp CCSSCEEEEEECCC-------------------------------------------------CCEEEEEETTSC-----
T ss_pred ccCCcEEEEEEccCCCC-------------------------------------------CCCccEEEEEeCCCE-----
Confidence 56667888888875320 112223333333333
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-CCcee
Q 005140 438 TYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQAN 516 (712)
Q Consensus 438 ~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~ 516 (712)
+.+|++.... ....+.+|...|.+++|+|+|++|++++.|+ .|++||+.++. .+..+. ...+.
T Consensus 178 ----i~~wd~~~~~---~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg---~i~iwd~~~~~------~~~~~~~~~~v~ 241 (319)
T 3frx_A 178 ----VKAWNLNQFQ---IEADFIGHNSNINTLTASPDGTLIASAGKDG---EIMLWNLAAKK------AMYTLSAQDEVF 241 (319)
T ss_dssp ----EEEEETTTTE---EEEEECCCCSCEEEEEECTTSSEEEEEETTC---EEEEEETTTTE------EEEEEECCSCEE
T ss_pred ----EEEEECCcch---hheeecCCCCcEEEEEEcCCCCEEEEEeCCC---eEEEEECCCCc------EEEEecCCCcEE
Confidence 3444443211 1234568899999999999999999999999 99999997654 444444 34799
Q ss_pred EEEEccCCCeEEEEeccCCCceEEEEECCcceeeee----------ccccceeeEEECCCCCEEEEEEccceeccccEEE
Q 005140 517 ALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT----------AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNI 586 (712)
Q Consensus 517 ~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~----------~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~i 586 (712)
+++|+|+|.+|++++ ++.+++|+++....+.. .+...+.+++|||||++|++++. |+.|+|
T Consensus 242 ~~~~sp~~~~la~~~----~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~-----Dg~i~v 312 (319)
T 3frx_A 242 SLAFSPNRYWLAAAT----ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT-----DNVIRV 312 (319)
T ss_dssp EEEECSSSSEEEEEE----TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEET-----TSCEEE
T ss_pred EEEEcCCCCEEEEEc----CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeec-----CceEEE
Confidence 999999999999887 56699999987655432 23456889999999999999999 999999
Q ss_pred EEec
Q 005140 587 WSFN 590 (712)
Q Consensus 587 w~~~ 590 (712)
|++.
T Consensus 313 Wd~~ 316 (319)
T 3frx_A 313 WQVM 316 (319)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9975
No 21
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.7e-33 Score=289.59 Aligned_cols=292 Identities=13% Similarity=0.180 Sum_probs=227.3
Q ss_pred cccccCCCcccceEEE-----cC-CCcEEEEEecCc-eEEeecccC------cceeeee-cCC-CeeEEEecCCCCEEEE
Q 005140 206 EPVYKRSYWTESFVQW-----SP-LGTYLATVHRQG-AAVWGGANT------FNRLMRY-AHP-QVKLIDFSPGEKYLVT 270 (712)
Q Consensus 206 ~~~~~~~~~~v~~v~~-----Sp-dg~~lat~~~~~-i~iw~~~~~------~~~~~~~-~~~-~v~~i~~Spdg~~l~t 270 (712)
...+.+|...|++++| +| +|++||+++.|+ |+||++... ......+ .|. .|.+++|+|++.+|++
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s 93 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAIS 93 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEE
T ss_pred eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEE
Confidence 3467899999999999 77 999999999999 889998621 1222333 344 5999999999999999
Q ss_pred EcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCC
Q 005140 271 YSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETES 349 (712)
Q Consensus 271 ~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~ 349 (712)
++.| ++|++||+.+++.+..+.+|...+. +++|+| ++++|++++ |++|++||+..
T Consensus 94 ~s~D----------~~v~lwd~~~~~~~~~~~~h~~~v~-------------~v~~sp-~~~~l~s~~~d~~i~~wd~~~ 149 (343)
T 2xzm_R 94 SSWD----------KTLRLWDLRTGTTYKRFVGHQSEVY-------------SVAFSP-DNRQILSAGAEREIKLWNILG 149 (343)
T ss_dssp EETT----------SEEEEEETTSSCEEEEEECCCSCEE-------------EEEECS-STTEEEEEETTSCEEEEESSS
T ss_pred EcCC----------CcEEEEECCCCcEEEEEcCCCCcEE-------------EEEECC-CCCEEEEEcCCCEEEEEeccC
Confidence 9999 9999999999999999999987764 799999 999999998 99999999874
Q ss_pred ceecc--cccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEE
Q 005140 350 FTLID--KKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVK 427 (712)
Q Consensus 350 ~~~~~--~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~ 427 (712)
..... ....|...|.+++|+|++.... .++|.+.+|+++
T Consensus 150 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------------------------------------~~~~~~~~l~s~ 190 (343)
T 2xzm_R 150 ECKFSSAEKENHSDWVSCVRYSPIMKSAN---------------------------------------KVQPFAPYFASV 190 (343)
T ss_dssp CEEEECCTTTSCSSCEEEEEECCCCCSCS---------------------------------------CCCSSCCEEEEE
T ss_pred CceeeeecccCCCceeeeeeecccccccc---------------------------------------ccCCCCCEEEEE
Confidence 33221 1124556689999998753211 124556677777
Q ss_pred EcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEE
Q 005140 428 VDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKL 507 (712)
Q Consensus 428 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~ 507 (712)
+.++. +.+|+.. . .....+.+|...|.+++|+|+|++|++++.|+ .|++||+..... ..
T Consensus 191 ~~d~~---------i~iwd~~--~--~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg---~v~iwd~~~~~~-----~~ 249 (343)
T 2xzm_R 191 GWDGR---------LKVWNTN--F--QIRYTFKAHESNVNHLSISPNGKYIATGGKDK---KLLIWDILNLTY-----PQ 249 (343)
T ss_dssp ETTSE---------EEEEETT--T--EEEEEEECCSSCEEEEEECTTSSEEEEEETTC---EEEEEESSCCSS-----CS
T ss_pred cCCCE---------EEEEcCC--C--ceeEEEcCccccceEEEECCCCCEEEEEcCCC---eEEEEECCCCcc-----cc
Confidence 77665 6777621 1 12245668999999999999999999999999 999999954322 12
Q ss_pred EEe-CCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeee--e-------------ccccceeeEEECCCCCEEE
Q 005140 508 TTL-KGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA--T-------------AEHFMATDVEWDPTGRYVA 571 (712)
Q Consensus 508 ~~~-~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~--~-------------~~~~~v~~~~~spdg~~l~ 571 (712)
..+ .++.+++++|+|++++++++. |+.|++|++.+++... . .|...+++++|+|+|++|+
T Consensus 250 ~~~~~~~~v~~v~~sp~~~~la~~~----d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~ 325 (343)
T 2xzm_R 250 REFDAGSTINQIAFNPKLQWVAVGT----DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLF 325 (343)
T ss_dssp EEEECSSCEEEEEECSSSCEEEEEE----SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEE
T ss_pred eeecCCCcEEEEEECCCCCEEEEEC----CCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEE
Confidence 222 356799999999999887654 7889999998655432 1 3556799999999999999
Q ss_pred EEEccceeccccEEEEEec
Q 005140 572 TAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 572 t~s~~~~~~d~~v~iw~~~ 590 (712)
+++. |+.|++|++.
T Consensus 326 sg~~-----Dg~v~~w~~~ 339 (343)
T 2xzm_R 326 AGFT-----DGVIRTFSFE 339 (343)
T ss_dssp EEET-----TSEEEEEEEE
T ss_pred EecC-----CceEEEEEEE
Confidence 9999 9999999975
No 22
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-35 Score=311.68 Aligned_cols=322 Identities=13% Similarity=0.252 Sum_probs=252.1
Q ss_pred CcccceEEEcCCCc-EEEEE----------ecCc-eEEeecccCcc---eeeeecCC-CeeEEEecCCCCEEEEEcCCCC
Q 005140 213 YWTESFVQWSPLGT-YLATV----------HRQG-AAVWGGANTFN---RLMRYAHP-QVKLIDFSPGEKYLVTYSSHEP 276 (712)
Q Consensus 213 ~~~v~~v~~Spdg~-~lat~----------~~~~-i~iw~~~~~~~---~~~~~~~~-~v~~i~~Spdg~~l~t~s~d~~ 276 (712)
...+.+++|||+|+ +||++ +.++ |+||+.. +.. .+..+.|. .|.+++|+|++++|++++.+
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-- 88 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLL-AADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDN-- 88 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESS-SGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESS--
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEcc-CCCCCcEEEEEecCCceEEEEECCCCCeEEEEccC--
Confidence 35788999999997 99999 7777 8999998 543 44455555 49999999999999999999
Q ss_pred CCCcCCCccEEEEEEccC----CceeeeccCCCcccccCCCCCcCCCCcCeEEecCCC-CCEEEEec-CCeEEEEEcCCc
Q 005140 277 SNPRDANRVVINIFDVRT----GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK-DKYFAKLG-KNMISVYETESF 350 (712)
Q Consensus 277 ~~~~~~~~~~I~iwd~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d-g~~la~~~-d~~i~iwd~~~~ 350 (712)
+.|++||+.+ .+.+..+.+|...+. +++|+| + +.+|++++ |+.|++|++.++
T Consensus 89 --------g~v~vw~~~~~~~~~~~~~~~~~h~~~v~-------------~~~~~~-~~~~~l~s~~~dg~v~iwd~~~~ 146 (416)
T 2pm9_A 89 --------GSLELYSTNEANNAINSMARFSNHSSSVK-------------TVKFNA-KQDNVLASGGNNGEIFIWDMNKC 146 (416)
T ss_dssp --------SCEEEECCSSTTSCCCEEEECCCSSSCCC-------------EEEECS-SSTTBEEEECSSSCEEBCBTTTT
T ss_pred --------CeEEEeecccccccccchhhccCCccceE-------------EEEEcC-CCCCEEEEEcCCCeEEEEECCCC
Confidence 9999999987 357888888877663 799999 8 88999998 999999999877
Q ss_pred e------ecc---cccccccCeeeEEECCC-CCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeee------eeccee
Q 005140 351 T------LID---KKSLKVENVMDFSWSPT-DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLF------SVSDCK 414 (712)
Q Consensus 351 ~------~~~---~~~~~~~~v~~~~~sp~-~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------~~~~~~ 414 (712)
. ... ....|...|.+++|+|+ +.+|++ ++.++. |.+|++.+.+.+...... ......
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-----~~~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 219 (416)
T 2pm9_A 147 TESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFAS-----AGSSNF--ASIWDLKAKKEVIHLSYTSPNSGIKQQLSV 219 (416)
T ss_dssp SSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEE-----ESSSSC--EEEEETTTTEEEEEECCCCCSSCCCCCEEE
T ss_pred ccccccccccccccccCCCCCeeEEEeCCCCCcEEEE-----EcCCCC--EEEEECCCCCcceEEeccccccccCCceEE
Confidence 5 221 12346667999999999 678887 556665 455666666555544433 455677
Q ss_pred EEECcCC-CEEEEEEcccccccccccccEEEEEEecCCcceeEEEec-CCCCceEEEEEee-CCCEEEEEEcCCCCCeEE
Q 005140 415 MYWQSSG-DYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELD-NKNDKIIAFAWEP-KGHRFAVIHGDSPRPDIS 491 (712)
Q Consensus 415 ~~~s~~g-~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-~h~~~v~~~~~sp-~g~~l~~~~~d~~~~~v~ 491 (712)
+.|+|++ .+++++..++. .+.+.+|++.....+. ..+. +|...|.+++|+| ++++|++++.|+ .|+
T Consensus 220 ~~~~~~~~~~l~~~~~d~~------~~~i~~~d~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg---~v~ 288 (416)
T 2pm9_A 220 VEWHPKNSTRVATATGSDN------DPSILIWDLRNANTPL--QTLNQGHQKGILSLDWCHQDEHLLLSSGRDN---TVL 288 (416)
T ss_dssp EEECSSCTTEEEEEECCSS------SCCCCEEETTSTTSCS--BCCCSCCSSCEEEEEECSSCSSCEEEEESSS---EEE
T ss_pred EEECCCCCCEEEEEECCCC------CceEEEEeCCCCCCCc--EEeecCccCceeEEEeCCCCCCeEEEEeCCC---CEE
Confidence 8999998 57888887751 0127899887643333 3344 7899999999999 999999999999 999
Q ss_pred EEEeecccccCceeEEEEeCC--CceeEEEEccCC-CeEEEEeccCCCceEEEEECCcceeeeec---------------
Q 005140 492 FYSMRTAQHAGRVSKLTTLKG--KQANALFWSPSG-RFIVLAGLKGFNGQLEFYNVDELETMATA--------------- 553 (712)
Q Consensus 492 i~d~~~~~~~~~~~~~~~~~~--~~v~~l~~spdg-~~l~~~~~~~~dg~v~iwd~~~~~~~~~~--------------- 553 (712)
+||+.++. .+..+.. ..+.+++|+|++ .+|++++. ||.|++|++.+.......
T Consensus 289 ~wd~~~~~------~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~---d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (416)
T 2pm9_A 289 LWNPESAE------QLSQFPARGNWCFKTKFAPEAPDLFACASF---DNKIEVQTLQNLTNTLDEQETETKQQESETDFW 359 (416)
T ss_dssp EECSSSCC------EEEEEECSSSCCCCEEECTTCTTEEEECCS---SSEEEEEESCCCCCSSCC---------------
T ss_pred EeeCCCCc------cceeecCCCCceEEEEECCCCCCEEEEEec---CCcEEEEEccCCCCCcccccccccccCCccccc
Confidence 99997654 4555544 478999999999 89999988 999999999865432211
Q ss_pred ----------------------cccceeeEEECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 554 ----------------------EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 554 ----------------------~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
+...+++++|||+|++|++++. |+.|+||++..
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~-----d~~v~~w~~~~ 414 (416)
T 2pm9_A 360 NNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPD-----GKGVSITNPKI 414 (416)
T ss_dssp -------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTT-----SSCBCCBCCCC
T ss_pred ccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCC-----CCeEEEEEecc
Confidence 3456779999999999999999 99999999763
No 23
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2e-33 Score=327.06 Aligned_cols=356 Identities=13% Similarity=0.178 Sum_probs=275.8
Q ss_pred CCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-CC-CeeEEEecCCCCEEEEEcCCCCCCCc
Q 005140 204 KPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPR 280 (712)
Q Consensus 204 ~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~~Spdg~~l~t~s~d~~~~~~ 280 (712)
.....+++|...|++++|||+|++||+++.+| |.||+.. ++..+..+. |. .|.+++|||+|++|++++.+
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------ 76 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYE-TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDD------ 76 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETT-TTEEEEEEECCSSCEEEEEEEGGGTEEEEEETT------
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECC-CCceEEEEecCCCcEEEEEEeCCCCEEEEEeCC------
Confidence 44567889999999999999999999999998 8899998 777776664 44 49999999999999999999
Q ss_pred CCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCc-eecccccc
Q 005140 281 DANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESF-TLIDKKSL 358 (712)
Q Consensus 281 ~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~-~~~~~~~~ 358 (712)
+.|++||+.+++.+..+.+|...+. +++|+| ++++|++++ |+.|++|++.++ ........
T Consensus 77 ----g~i~vw~~~~~~~~~~~~~~~~~v~-------------~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 138 (814)
T 3mkq_A 77 ----FRIRVFNYNTGEKVVDFEAHPDYIR-------------SIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEG 138 (814)
T ss_dssp ----SEEEEEETTTCCEEEEEECCSSCEE-------------EEEECS-SSSEEEEEETTSEEEEEEGGGTSEEEEEEEC
T ss_pred ----CeEEEEECCCCcEEEEEecCCCCEE-------------EEEEeC-CCCEEEEEcCCCEEEEEECCCCceEEEEEcC
Confidence 9999999999999999998887763 799999 999999998 999999999876 44444555
Q ss_pred cccCeeeEEECC-CCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeee-ecceeEEECc--CCCEEEEEEcccccc
Q 005140 359 KVENVMDFSWSP-TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFS-VSDCKMYWQS--SGDYLAVKVDRYTKT 434 (712)
Q Consensus 359 ~~~~v~~~~~sp-~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~s~--~g~~l~~~~~~~~~~ 434 (712)
|...|.+++|+| ++..|++ ++.++. |.+|++............. .....+.|+| +|.+|++++.++.
T Consensus 139 ~~~~v~~~~~~p~~~~~l~~-----~~~dg~--v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-- 209 (814)
T 3mkq_A 139 HEHFVMCVAFNPKDPSTFAS-----GCLDRT--VKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT-- 209 (814)
T ss_dssp CSSCEEEEEEETTEEEEEEE-----EETTSE--EEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSE--
T ss_pred CCCcEEEEEEEcCCCCEEEE-----EeCCCe--EEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCE--
Confidence 777899999999 7888888 556655 5556665544433333222 4455678888 9999999998876
Q ss_pred cccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--C
Q 005140 435 KKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--G 512 (712)
Q Consensus 435 ~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~ 512 (712)
+.+|++.... ....+.+|...|.+++|+|++++|++++.|+ .|++|++.++. .+..+. .
T Consensus 210 -------i~~~d~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~v~vwd~~~~~------~~~~~~~~~ 270 (814)
T 3mkq_A 210 -------IKIWDYQTKS---CVATLEGHMSNVSFAVFHPTLPIIISGSEDG---TLKIWNSSTYK------VEKTLNVGL 270 (814)
T ss_dssp -------EEEEETTTTE---EEEEEECCSSCEEEEEECSSSSEEEEEETTS---CEEEEETTTCS------EEEEECCSS
T ss_pred -------EEEEECCCCc---EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC---eEEEEECCCCc------EEEEeecCC
Confidence 7888875432 2345668899999999999999999999999 99999997654 444444 3
Q ss_pred CceeEEEEccCCCe--EEEEeccCCCceEEEEECCcc----------eeeee----------------------------
Q 005140 513 KQANALFWSPSGRF--IVLAGLKGFNGQLEFYNVDEL----------ETMAT---------------------------- 552 (712)
Q Consensus 513 ~~v~~l~~spdg~~--l~~~~~~~~dg~v~iwd~~~~----------~~~~~---------------------------- 552 (712)
..+.+++|+|+|+. ++++. ++.+.+|++... ..+..
T Consensus 271 ~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (814)
T 3mkq_A 271 ERSWCIATHPTGRKNYIASGF----DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLS 346 (814)
T ss_dssp SSEEEEEECTTCGGGEEEEEE----TTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBC
T ss_pred CcEEEEEEccCCCceEEEEEe----CCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccce
Confidence 47999999999974 44444 677888886531 11110
Q ss_pred -------ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCceeeeecccceeeeEEecCCCCCCChhhHHHHH
Q 005140 553 -------AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLKDHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 553 -------~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~~~~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
.+...+++++|+|+|++|++++. +.+.+|++..... .+.+.+.+++|+|+++.+++++.++.++
T Consensus 347 ~~~~~~~~~~~~~~~~~~spdg~~la~~~~------~~~~i~~~~~~~~--~~~~~i~~~~~spdg~~la~~~~~g~v~ 417 (814)
T 3mkq_A 347 LQTKELGSVDVFPQSLAHSPNGRFVTVVGD------GEYVIYTALAWRN--KAFGKCQDFVWGPDSNSYALIDETGQIK 417 (814)
T ss_dssp CCCEEECCCSSCCSEEEECTTSSEEEEEET------TEEEEEETTTTEE--EEEEECSEEEECTTSSCEEEECTTCCEE
T ss_pred eeeecCCCCccCCceeEECCCCCEEEEecC------CEEEEEECccccc--cCCCceEEEEEeCCCCeEEEEeCCCcEE
Confidence 12235689999999999998874 8899999753322 2345677888888888888777666543
No 24
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2e-33 Score=290.62 Aligned_cols=282 Identities=10% Similarity=0.101 Sum_probs=214.2
Q ss_pred CCCcccceEEEcCCCcEEEEEecCceEEeeccc-----------Ccceeeeec-CCCeeEEEecCCCCEEEEEcCCCCCC
Q 005140 211 RSYWTESFVQWSPLGTYLATVHRQGAAVWGGAN-----------TFNRLMRYA-HPQVKLIDFSPGEKYLVTYSSHEPSN 278 (712)
Q Consensus 211 ~~~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~-----------~~~~~~~~~-~~~v~~i~~Spdg~~l~t~s~d~~~~ 278 (712)
.|...+.+++|||||++|++++...+++|+... ......... ...|.+++|+|++ +|++++.|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~d---- 102 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDS---- 102 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETT----
T ss_pred cccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECC----
Confidence 455679999999999999999866677887430 011111222 3459999999985 68899999
Q ss_pred CcCCCccEEEEEEccCCceeeec----cCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceec
Q 005140 279 PRDANRVVINIFDVRTGKVMRDF----KGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLI 353 (712)
Q Consensus 279 ~~~~~~~~I~iwd~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~ 353 (712)
++|+|||+.+++.+..+ .+|...+. +++|+| +|++|++++ |++|++||+.+++.+
T Consensus 103 ------g~v~lWd~~~~~~~~~~~~~~~~H~~~V~-------------~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~ 162 (344)
T 4gqb_B 103 ------GAVELWELDENETLIVSKFCKYEHDDIVS-------------TVSVLS-SGTQAVSGSKDICIKVWDLAQQVVL 162 (344)
T ss_dssp ------SEEEEEEECTTSSCEEEEEEEECCSSCEE-------------EEEECT-TSSEEEEEETTSCEEEEETTTTEEE
T ss_pred ------CEEEEEeccCCCceeEeeccccCCCCCEE-------------EEEECC-CCCEEEEEeCCCeEEEEECCCCcEE
Confidence 99999999998765443 36766653 799999 999999999 999999999999988
Q ss_pred ccccccccCeeeEEECCCCC-eEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccc
Q 005140 354 DKKSLKVENVMDFSWSPTDP-IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYT 432 (712)
Q Consensus 354 ~~~~~~~~~v~~~~~sp~~~-~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~ 432 (712)
.....|...|.+++|+|++. +|++ ++.|+.+++| ++.+.+.+..
T Consensus 163 ~~~~~h~~~V~~~~~~~~~~~~l~s-----~s~D~~v~iw--d~~~~~~~~~---------------------------- 207 (344)
T 4gqb_B 163 SSYRAHAAQVTCVAASPHKDSVFLS-----CSEDNRILLW--DTRCPKPASQ---------------------------- 207 (344)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEE-----EETTSCEEEE--ETTSSSCEEE----------------------------
T ss_pred EEEcCcCCceEEEEecCCCCCceee-----eccccccccc--cccccceeee----------------------------
Confidence 87778888999999999985 5566 6677776654 3332221110
Q ss_pred cccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeC-CCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC
Q 005140 433 KTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK-GHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK 511 (712)
Q Consensus 433 ~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~-g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~ 511 (712)
+....|...+.+++|+|+ +++|++++.|+ .|++||++++. .+..+.
T Consensus 208 ------------------------~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg---~v~~wd~~~~~------~~~~~~ 254 (344)
T 4gqb_B 208 ------------------------IGCSAPGYLPTSLAWHPQQSEVFVFGDENG---TVSLVDTKSTS------CVLSSA 254 (344)
T ss_dssp ------------------------CC----CCCEEEEEECSSCTTEEEEEETTS---EEEEEESCC--------CCEEEE
T ss_pred ------------------------eecceeeccceeeeecCCCCcceEEeccCC---cEEEEECCCCc------EEEEEc
Confidence 111134567889999995 56788899999 99999997655 344444
Q ss_pred C--CceeEEEEccCC-CeEEEEeccCCCceEEEEECCcceeeee-ccccceeeEEECCCCCE-EEEEEccceeccccEEE
Q 005140 512 G--KQANALFWSPSG-RFIVLAGLKGFNGQLEFYNVDELETMAT-AEHFMATDVEWDPTGRY-VATAVTSVHEMENGFNI 586 (712)
Q Consensus 512 ~--~~v~~l~~spdg-~~l~~~~~~~~dg~v~iwd~~~~~~~~~-~~~~~v~~~~~spdg~~-l~t~s~~~~~~d~~v~i 586 (712)
+ ..|++++|+|+| ++|++++. |+.|+|||+.+++++.. .|...|++++|+|+|++ |++++. |+.|++
T Consensus 255 ~h~~~v~~v~fsp~g~~~lasgs~---D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~-----D~~v~~ 326 (344)
T 4gqb_B 255 VHSQCVTGLVFSPHSVPFLASLSE---DCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGW-----DHQVVH 326 (344)
T ss_dssp CCSSCEEEEEECSSSSCCEEEEET---TSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEET-----TSCEEE
T ss_pred CCCCCEEEEEEccCCCeEEEEEeC---CCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcC-----CCeEEE
Confidence 4 479999999998 57889988 99999999998887764 67789999999999975 668888 999999
Q ss_pred EEecCce
Q 005140 587 WSFNGKL 593 (712)
Q Consensus 587 w~~~g~~ 593 (712)
|++..+.
T Consensus 327 w~v~~~~ 333 (344)
T 4gqb_B 327 HVVPTEP 333 (344)
T ss_dssp EECCC--
T ss_pred EECCCCC
Confidence 9987543
No 25
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.9e-32 Score=289.88 Aligned_cols=289 Identities=14% Similarity=0.181 Sum_probs=225.9
Q ss_pred CCCcccceEEEcCCCcEEEEEecCceEEeecccCcceeeeecCC--------------------CeeEEEecCCCCEEEE
Q 005140 211 RSYWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHP--------------------QVKLIDFSPGEKYLVT 270 (712)
Q Consensus 211 ~~~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~--------------------~v~~i~~Spdg~~l~t 270 (712)
+|...|++++|||||++||+++...++||+.. ++..+..+... .|.+++|||+|++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~-~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVS-DGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEECBSCEEEEETT-TCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEcCCcEEEEEec-CCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 68999999999999999999987669999998 66666554211 2889999999999999
Q ss_pred EcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCC
Q 005140 271 YSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETES 349 (712)
Q Consensus 271 ~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~ 349 (712)
++.| +.|+|||+.+++.+..+.+|...+. +++|+| ++++|++++ |++|++||+.+
T Consensus 141 ~~~d----------~~i~iwd~~~~~~~~~~~~h~~~v~-------------~~~~~p-~~~~l~s~s~d~~v~iwd~~~ 196 (393)
T 1erj_A 141 GAED----------RLIRIWDIENRKIVMILQGHEQDIY-------------SLDYFP-SGDKLVSGSGDRTVRIWDLRT 196 (393)
T ss_dssp EETT----------SCEEEEETTTTEEEEEECCCSSCEE-------------EEEECT-TSSEEEEEETTSEEEEEETTT
T ss_pred EcCC----------CeEEEEECCCCcEEEEEccCCCCEE-------------EEEEcC-CCCEEEEecCCCcEEEEECCC
Confidence 9999 9999999999999999999987763 799999 999999998 99999999998
Q ss_pred ceecccccccccCeeeEEECC-CCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEE
Q 005140 350 FTLIDKKSLKVENVMDFSWSP-TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKV 428 (712)
Q Consensus 350 ~~~~~~~~~~~~~v~~~~~sp-~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~ 428 (712)
+...... .+...+.+++|+| ++.+|++ ++.++.+++| +..+...+...
T Consensus 197 ~~~~~~~-~~~~~v~~~~~~~~~~~~l~~-----~s~d~~v~iw--d~~~~~~~~~~----------------------- 245 (393)
T 1erj_A 197 GQCSLTL-SIEDGVTTVAVSPGDGKYIAA-----GSLDRAVRVW--DSETGFLVERL----------------------- 245 (393)
T ss_dssp TEEEEEE-ECSSCEEEEEECSTTCCEEEE-----EETTSCEEEE--ETTTCCEEEEE-----------------------
T ss_pred CeeEEEE-EcCCCcEEEEEECCCCCEEEE-----EcCCCcEEEE--ECCCCcEEEee-----------------------
Confidence 8765433 2345688999999 7888888 6677776655 33222111000
Q ss_pred cccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccC------
Q 005140 429 DRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAG------ 502 (712)
Q Consensus 429 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~------ 502 (712)
.. ......+|...|.+++|+|+|++|++++.|+ .|++||+.+.....
T Consensus 246 -------------------~~-----~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~---~v~~wd~~~~~~~~~~~~~~ 298 (393)
T 1erj_A 246 -------------------DS-----ENESGTGHKDSVYSVVFTRDGQSVVSGSLDR---SVKLWNLQNANNKSDSKTPN 298 (393)
T ss_dssp -------------------C-----------CCCSSCEEEEEECTTSSEEEEEETTS---EEEEEEC-------------
T ss_pred -------------------cc-----cccCCCCCCCCEEEEEECCCCCEEEEEeCCC---EEEEEECCCCCCcccccCCC
Confidence 00 0011237889999999999999999999999 99999997532110
Q ss_pred ceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECC------CCCEEEE
Q 005140 503 RVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDP------TGRYVAT 572 (712)
Q Consensus 503 ~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~sp------dg~~l~t 572 (712)
.......+.+| .+.+++|+|+|++|++++. |+.|++||+.+++.+.. .|...|.+++|+| ++.+|++
T Consensus 299 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~---D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~s 375 (393)
T 1erj_A 299 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSK---DRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT 375 (393)
T ss_dssp --CEEEEEECCSSCEEEEEECGGGCEEEEEET---TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEE
T ss_pred CCcceEEEecccCcEEEEEECCCCCEEEEEeC---CCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEE
Confidence 01122333333 6899999999999999998 99999999998887654 6778999999886 7889999
Q ss_pred EEccceeccccEEEEEec
Q 005140 573 AVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 573 ~s~~~~~~d~~v~iw~~~ 590 (712)
++. |+.|+||++.
T Consensus 376 gs~-----Dg~i~iW~~~ 388 (393)
T 1erj_A 376 GSG-----DCKARIWKYK 388 (393)
T ss_dssp EET-----TSEEEEEEEE
T ss_pred ECC-----CCcEEECccc
Confidence 999 9999999986
No 26
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.7e-32 Score=279.20 Aligned_cols=286 Identities=16% Similarity=0.274 Sum_probs=229.8
Q ss_pred CcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-C-CCeeEEEecCCCCEEEEEcCCCCCCCcC
Q 005140 205 PEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-H-PQVKLIDFSPGEKYLVTYSSHEPSNPRD 281 (712)
Q Consensus 205 ~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~-~~v~~i~~Spdg~~l~t~s~d~~~~~~~ 281 (712)
....+.+|...|++++|+|+|++||+++.++ ++||+.. +......+. | ..|.+++|+|++++|++++.+
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d------- 86 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-DGKFEKTISGHKLGISDVAWSSDSNLLVSASDD------- 86 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEEEECCCSSCEEEEEECTTSSEEEEEETT-------
T ss_pred eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCC-CcccchhhccCCCceEEEEEcCCCCEEEEECCC-------
Confidence 3446789999999999999999999999999 8899998 666555553 4 359999999999999999999
Q ss_pred CCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccc
Q 005140 282 ANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKV 360 (712)
Q Consensus 282 ~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~ 360 (712)
+.|++||+.+++.+..+.+|...+. ++.|+| ++++|++++ |+.|++||+.+++.+.....|.
T Consensus 87 ---~~i~vwd~~~~~~~~~~~~~~~~v~-------------~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 149 (312)
T 4ery_A 87 ---KTLKIWDVSSGKCLKTLKGHSNYVF-------------CCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 149 (312)
T ss_dssp ---SEEEEEETTTCCEEEEEECCSSCEE-------------EEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCCS
T ss_pred ---CEEEEEECCCCcEEEEEcCCCCCEE-------------EEEEcC-CCCEEEEEeCCCcEEEEECCCCEEEEEecCCC
Confidence 9999999999999999998877663 689999 999999999 9999999999888776666677
Q ss_pred cCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccc
Q 005140 361 ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 440 (712)
Q Consensus 361 ~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~ 440 (712)
..|.+++|+|++++|++ ++.++.+++| ++.+.+.+.
T Consensus 150 ~~v~~~~~~~~~~~l~~-----~~~d~~i~~w--d~~~~~~~~------------------------------------- 185 (312)
T 4ery_A 150 DPVSAVHFNRDGSLIVS-----SSYDGLCRIW--DTASGQCLK------------------------------------- 185 (312)
T ss_dssp SCEEEEEECTTSSEEEE-----EETTSCEEEE--ETTTCCEEE-------------------------------------
T ss_pred CcEEEEEEcCCCCEEEE-----EeCCCcEEEE--ECCCCceee-------------------------------------
Confidence 78999999999999888 6666665544 332211100
Q ss_pred cEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--c---e
Q 005140 441 GFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--Q---A 515 (712)
Q Consensus 441 ~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~---v 515 (712)
.....+...+..++|+|++++|++++.|+ .|++||+.++. .+..+.++ . +
T Consensus 186 ----------------~~~~~~~~~~~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~------~~~~~~~~~~~~~~~ 240 (312)
T 4ery_A 186 ----------------TLIDDDNPPVSFVKFSPNGKYILAATLDN---TLKLWDYSKGK------CLKTYTGHKNEKYCI 240 (312)
T ss_dssp ----------------EECCSSCCCEEEEEECTTSSEEEEEETTT---EEEEEETTTTE------EEEEECSSCCSSSCC
T ss_pred ----------------EEeccCCCceEEEEECCCCCEEEEEcCCC---eEEEEECCCCc------EEEEEEecCCceEEE
Confidence 00113466788999999999999999999 99999997654 45555443 1 2
Q ss_pred eEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 516 NALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 516 ~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
......+++.+|++++. ||.|++||+.+++.+.. .|...|.+++|+|++.+|++++.+ .|+.|++|+.+
T Consensus 241 ~~~~~~~~~~~l~sg~~---dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~---~d~~i~~W~~d 311 (312)
T 4ery_A 241 FANFSVTGGKWIVSGSE---DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE---NDKTIKLWKSD 311 (312)
T ss_dssp CEEEECSSSCEEEECCT---TSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECT---TTCCEEEEECC
T ss_pred EEEEEeCCCcEEEEECC---CCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEcc---CCccEEEecCC
Confidence 22333467889999988 99999999998887765 577889999999999999999831 18999999864
No 27
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.9e-33 Score=323.12 Aligned_cols=387 Identities=11% Similarity=0.132 Sum_probs=296.1
Q ss_pred chhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeee
Q 005140 172 LQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMR 250 (712)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~ 250 (712)
+.....+|+++ .+++...++.+.+|+. ..+.....+.+|...|++++|||+|++||+++.++ |.||+.. ++..+..
T Consensus 16 v~~i~~sp~~~-~la~~~~~g~v~iwd~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~-~~~~~~~ 92 (814)
T 3mkq_A 16 VKGIDFHPTEP-WVLTTLYSGRVEIWNY-ETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN-TGEKVVD 92 (814)
T ss_dssp EEEEEECSSSS-EEEEEETTSEEEEEET-TTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT-TCCEEEE
T ss_pred eEEEEECCCCC-EEEEEeCCCEEEEEEC-CCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC-CCcEEEE
Confidence 44556667665 5677778899999998 46667778899999999999999999999999999 8899999 7777766
Q ss_pred ec-CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC-ceeeeccCCCcccccCCCCCcCCCCcCeEEec
Q 005140 251 YA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG-KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWG 327 (712)
Q Consensus 251 ~~-~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 327 (712)
+. |. .|.+++|+|+|++|++++.+ +.|++||+.++ .....+.+|...+. +++|+
T Consensus 93 ~~~~~~~v~~~~~s~~~~~l~~~~~d----------g~i~vw~~~~~~~~~~~~~~~~~~v~-------------~~~~~ 149 (814)
T 3mkq_A 93 FEAHPDYIRSIAVHPTKPYVLSGSDD----------LTVKLWNWENNWALEQTFEGHEHFVM-------------CVAFN 149 (814)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEETT----------SEEEEEEGGGTSEEEEEEECCSSCEE-------------EEEEE
T ss_pred EecCCCCEEEEEEeCCCCEEEEEcCC----------CEEEEEECCCCceEEEEEcCCCCcEE-------------EEEEE
Confidence 64 54 49999999999999999999 99999999887 66777777776653 78999
Q ss_pred CCCCCEEEEec-CCeEEEEEcCCceecccccccc-cCeeeEEECC--CCCeEEEEeecCCCCCCCeEEEEEecCCcccee
Q 005140 328 GGKDKYFAKLG-KNMISVYETESFTLIDKKSLKV-ENVMDFSWSP--TDPIISLFVPELGGGNQPARVSLVQIPSKEELR 403 (712)
Q Consensus 328 ~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~sp--~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~ 403 (712)
|.++.+|++++ |+.|++|++.++........+. ..+..++|+| ++.+|++ ++.++ .|.+|+..+.+.+.
T Consensus 150 p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-----~~~dg--~i~~~d~~~~~~~~ 222 (814)
T 3mkq_A 150 PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT-----ASDDL--TIKIWDYQTKSCVA 222 (814)
T ss_dssp TTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEE-----ECTTS--EEEEEETTTTEEEE
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEE-----EeCCC--EEEEEECCCCcEEE
Confidence 83456888888 9999999998776554444443 6799999999 8999998 55555 56667777766666
Q ss_pred eeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCE--EEEE
Q 005140 404 QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHR--FAVI 481 (712)
Q Consensus 404 ~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~--l~~~ 481 (712)
....+......+.|+|+|.+|++++.++. +.+|++.... ....+..|...+.+++|+|+|.. ++++
T Consensus 223 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---------v~vwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 290 (814)
T 3mkq_A 223 TLEGHMSNVSFAVFHPTLPIIISGSEDGT---------LKIWNSSTYK---VEKTLNVGLERSWCIATHPTGRKNYIASG 290 (814)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEETTSC---------EEEEETTTCS---EEEEECCSSSSEEEEEECTTCGGGEEEEE
T ss_pred EEcCCCCCEEEEEEcCCCCEEEEEeCCCe---------EEEEECCCCc---EEEEeecCCCcEEEEEEccCCCceEEEEE
Confidence 55555566677899999999999998877 7888876432 22456677899999999999874 4444
Q ss_pred EcCCCCCeEEEEEeecccccCc----eeEEE---------------------------------EeC--CCceeEEEEcc
Q 005140 482 HGDSPRPDISFYSMRTAQHAGR----VSKLT---------------------------------TLK--GKQANALFWSP 522 (712)
Q Consensus 482 ~~d~~~~~v~i~d~~~~~~~~~----~~~~~---------------------------------~~~--~~~v~~l~~sp 522 (712)
. ++ .+.+|++........ ...+. .+. ...+.+++|+|
T Consensus 291 ~-~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 366 (814)
T 3mkq_A 291 F-DN---GFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP 366 (814)
T ss_dssp E-TT---EEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT
T ss_pred e-CC---CEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC
Confidence 4 44 578887653211000 00111 111 11468899999
Q ss_pred CCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCceeeeecccce
Q 005140 523 SGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLKDHF 602 (712)
Q Consensus 523 dg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~~~~~i 602 (712)
+|+++++++ +|.+.+|++...... +.+.+++++|+|+|++|++++. ++.+++|+. ...+...+
T Consensus 367 dg~~la~~~----~~~~~i~~~~~~~~~---~~~~i~~~~~spdg~~la~~~~-----~g~v~l~~~-----~~~~~~~v 429 (814)
T 3mkq_A 367 NGRFVTVVG----DGEYVIYTALAWRNK---AFGKCQDFVWGPDSNSYALIDE-----TGQIKYYKN-----FKEVTSWS 429 (814)
T ss_dssp TSSEEEEEE----TTEEEEEETTTTEEE---EEEECSEEEECTTSSCEEEECT-----TCCEEEEET-----TEECTTCC
T ss_pred CCCEEEEec----CCEEEEEECcccccc---CCCceEEEEEeCCCCeEEEEeC-----CCcEEEEEC-----CCCccceE
Confidence 999999987 799999998744332 3467889999999999999999 999999962 23355678
Q ss_pred eeeEEecCC---CCCCChhhHHHHH
Q 005140 603 FQFLWRPRP---PSFLTPEKEEEIA 624 (712)
Q Consensus 603 ~~~~w~p~~---~~l~s~~~d~~i~ 624 (712)
..+.|+|++ ..|++++.++.|+
T Consensus 430 ~~~~~s~dg~~~~~l~~~~~d~~v~ 454 (814)
T 3mkq_A 430 VPMHSAIDRLFSGALLGVKSDGFVY 454 (814)
T ss_dssp CCCSSCCCEEECSSSEEEEETTEEE
T ss_pred EcCCcCccceecceEEEEecCCEEE
Confidence 889999998 6888887777654
No 28
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.2e-32 Score=290.85 Aligned_cols=296 Identities=14% Similarity=0.211 Sum_probs=239.3
Q ss_pred ccchhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCccee
Q 005140 170 ENLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRL 248 (712)
Q Consensus 170 ~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~ 248 (712)
..+.+..++|++. .++..+.|+++.+|+. ..+.....+.+|...|++++|+|+|++||+++.|+ |+|||.. +...+
T Consensus 109 ~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~-~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~-~~~~~ 185 (410)
T 1vyh_C 109 SPVTRVIFHPVFS-VMVSASEDATIKVWDY-ETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ-GFECI 185 (410)
T ss_dssp SCEEEEEECSSSS-EEEEEESSSCEEEEET-TTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT-SSCEE
T ss_pred CcEEEEEEcCCCC-EEEEEeCCCeEEEEEC-CCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCcee
Confidence 3455667777665 6677888999999998 56777888999999999999999999999999999 8899998 77777
Q ss_pred eeec-CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEe
Q 005140 249 MRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRW 326 (712)
Q Consensus 249 ~~~~-~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (712)
..+. |. .|.+++|+|+|++|++++.| ++|++||+.++.++..+.+|...+. ++.|
T Consensus 186 ~~~~~h~~~V~~v~~~p~~~~l~s~s~D----------~~i~~wd~~~~~~~~~~~~h~~~v~-------------~~~~ 242 (410)
T 1vyh_C 186 RTMHGHDHNVSSVSIMPNGDHIVSASRD----------KTIKMWEVQTGYCVKTFTGHREWVR-------------MVRP 242 (410)
T ss_dssp ECCCCCSSCEEEEEECSSSSEEEEEETT----------SEEEEEETTTCCEEEEEECCSSCEE-------------EEEE
T ss_pred EEEcCCCCCEEEEEEeCCCCEEEEEeCC----------CeEEEEECCCCcEEEEEeCCCccEE-------------EEEE
Confidence 6663 44 49999999999999999999 9999999999999999999887663 6899
Q ss_pred cCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeee
Q 005140 327 GGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK 405 (712)
Q Consensus 327 s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 405 (712)
+| ++.+|++++ |+.|++|++.++........|...|.+++|+|++.+... ....+..
T Consensus 243 ~~-~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~-----~~~~~~~---------------- 300 (410)
T 1vyh_C 243 NQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSI-----SEATGSE---------------- 300 (410)
T ss_dssp CT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGG-----GGCCSCC----------------
T ss_pred CC-CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccch-----hhhcccc----------------
Confidence 99 999999999 999999999988877666677788999999998765332 0000000
Q ss_pred eeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCC
Q 005140 406 NLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDS 485 (712)
Q Consensus 406 ~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~ 485 (712)
.....+.|.+|++++.++. +.+|++.... ....+.+|...|.+++|+|+|++|++++.|+
T Consensus 301 --------~~~~~~~g~~l~sgs~D~~---------i~iwd~~~~~---~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~ 360 (410)
T 1vyh_C 301 --------TKKSGKPGPFLLSGSRDKT---------IKMWDVSTGM---CLMTLVGHDNWVRGVLFHSGGKFILSCADDK 360 (410)
T ss_dssp ---------------CCEEEEEETTSE---------EEEEETTTTE---EEEEEECCSSCEEEEEECSSSSCEEEEETTT
T ss_pred --------ccccCCCCCEEEEEeCCCe---------EEEEECCCCc---eEEEEECCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 0012446789999998877 7888876432 2345678999999999999999999999999
Q ss_pred CCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 486 PRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 486 ~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
.|++||+.++. .+..+. ...|++++|+|++.+|++++. ||.|++|+++
T Consensus 361 ---~i~vwd~~~~~------~~~~~~~h~~~v~~l~~~~~~~~l~sgs~---D~~i~vW~~r 410 (410)
T 1vyh_C 361 ---TLRVWDYKNKR------CMKTLNAHEHFVTSLDFHKTAPYVVTGSV---DQTVKVWECR 410 (410)
T ss_dssp ---EEEEECCTTSC------CCEEEECCSSCEEEEEECSSSSCEEEEET---TSEEEEEC--
T ss_pred ---eEEEEECCCCc------eEEEEcCCCCcEEEEEEcCCCCEEEEEeC---CCcEEEEeCC
Confidence 99999997654 233443 447999999999999999998 9999999863
No 29
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.9e-32 Score=307.98 Aligned_cols=359 Identities=12% Similarity=0.175 Sum_probs=267.8
Q ss_pred ccchhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCc---ccceEEEcCC-CcEEEEEecCc-eEEeecccC
Q 005140 170 ENLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYW---TESFVQWSPL-GTYLATVHRQG-AAVWGGANT 244 (712)
Q Consensus 170 ~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~---~v~~v~~Spd-g~~lat~~~~~-i~iw~~~~~ 244 (712)
..+....++|+++..++..+.++.+.+|+. ...+....+.+|.. .|++++|+|+ |++|++++.++ |++|++. +
T Consensus 161 ~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~ 238 (615)
T 1pgu_A 161 QRINACHLKQSRPMRSMTVGDDGSVVFYQG-PPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK-S 238 (615)
T ss_dssp SCEEEEEECSSSSCEEEEEETTTEEEEEET-TTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT-T
T ss_pred ccEEEEEECCCCCcEEEEEeCCCcEEEEeC-CCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECC-C
Confidence 345566777888778889999999999998 56667778888998 9999999999 99999999998 8899998 7
Q ss_pred cceeeee-----cCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCC
Q 005140 245 FNRLMRY-----AHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAG 318 (712)
Q Consensus 245 ~~~~~~~-----~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~ 318 (712)
.+.+..+ .|.. |.+++|+ ++++|++++.+ +.|++||+.+++.+..+..+..... .
T Consensus 239 ~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d----------~~i~~wd~~~~~~~~~~~~~~~~~~--------~ 299 (615)
T 1pgu_A 239 GEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGAD----------ATIRVWDVTTSKCVQKWTLDKQQLG--------N 299 (615)
T ss_dssp CCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETT----------SEEEEEETTTTEEEEEEECCTTCGG--------G
T ss_pred CCEeEEecccccccCCceEEEEEc-CCCEEEEEcCC----------CcEEEEECCCCcEEEEEcCCCCccc--------C
Confidence 7777777 5554 9999999 99999999999 9999999999999988887632110 0
Q ss_pred CCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCC--------------------------
Q 005140 319 VSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPT-------------------------- 371 (712)
Q Consensus 319 ~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~-------------------------- 371 (712)
. ...+.| + ++.++++++ ++.|++|++.++..+.....|...|.+++| |+
T Consensus 300 ~-~~~~~~-~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v 375 (615)
T 1pgu_A 300 Q-QVGVVA-T-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLI 375 (615)
T ss_dssp C-EEEEEE-E-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCE
T ss_pred c-eeEEEe-C-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCce
Confidence 0 004566 4 677888887 999999999987776655555555666666 54
Q ss_pred -------CCeEEEEeecCCCCCCCeEEEEEecC--------------------------------Cccceeeeeeeeecc
Q 005140 372 -------DPIISLFVPELGGGNQPARVSLVQIP--------------------------------SKEELRQKNLFSVSD 412 (712)
Q Consensus 372 -------~~~la~~~~~~~~~~~~~~i~~~~~~--------------------------------~~~~~~~~~~~~~~~ 412 (712)
+..|++ ++.++.+++|..... ..+.+.... +....
T Consensus 376 ~~~~~~~~~~l~~-----~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 449 (615)
T 1pgu_A 376 VSLDNSKAQEYSS-----ISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPG 449 (615)
T ss_dssp EEEECCSTTCCEE-----EETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCE
T ss_pred EEEEECCCcEEEE-----EeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCc
Confidence 333333 333333333322210 111111111 11222
Q ss_pred eeEEECcCCCEEEEEEc-ccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEE
Q 005140 413 CKMYWQSSGDYLAVKVD-RYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDIS 491 (712)
Q Consensus 413 ~~~~~s~~g~~l~~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~ 491 (712)
..+.|+ +++|+++.. ++. +.+|++...... ...+.+|...|.+++|+|+|++|++++.|+ .|+
T Consensus 450 ~~~~~~--~~~l~~~~~~d~~---------i~~~~~~~~~~~--~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg---~i~ 513 (615)
T 1pgu_A 450 SAVSLS--QNYVAVGLEEGNT---------IQVFKLSDLEVS--FDLKTPLRAKPSYISISPSETYIAAGDVMG---KIL 513 (615)
T ss_dssp EEEEEC--SSEEEEEETTTSC---------EEEEETTEEEEE--EECSSCCSSCEEEEEECTTSSEEEEEETTS---CEE
T ss_pred eEEEEc--CCEEEEeecCCCe---------EEEEECCCcccc--ccccCCccCceEEEEECCCCCEEEEcCCCC---eEE
Confidence 334444 666666665 554 778876542111 144668899999999999999999999999 999
Q ss_pred EEEeecccccCceeEEEEeCC---CceeEEEEcc----------CCCeEEEEeccCCCceEEEEECCcc-eeeee--ccc
Q 005140 492 FYSMRTAQHAGRVSKLTTLKG---KQANALFWSP----------SGRFIVLAGLKGFNGQLEFYNVDEL-ETMAT--AEH 555 (712)
Q Consensus 492 i~d~~~~~~~~~~~~~~~~~~---~~v~~l~~sp----------dg~~l~~~~~~~~dg~v~iwd~~~~-~~~~~--~~~ 555 (712)
+|++.++. .+..+.+ ..+++++|+| +|++|++++. ||.|++||+.++ +.+.. .|.
T Consensus 514 iw~~~~~~------~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~h~ 584 (615)
T 1pgu_A 514 LYDLQSRE------VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL---DTNIFIYSVKRPMKIIKALNAHK 584 (615)
T ss_dssp EEETTTTE------EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEET---TSCEEEEESSCTTCCEEETTSST
T ss_pred EeeCCCCc------ceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcC---CCcEEEEECCCCceechhhhcCc
Confidence 99997654 4555543 3799999999 9999999998 999999999986 55554 577
Q ss_pred cceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 556 FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 556 ~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
..|++++|+|+|+ |++++. |+.|++|++.
T Consensus 585 ~~v~~l~~s~~~~-l~s~~~-----d~~v~iw~~~ 613 (615)
T 1pgu_A 585 DGVNNLLWETPST-LVSSGA-----DACIKRWNVV 613 (615)
T ss_dssp TCEEEEEEEETTE-EEEEET-----TSCEEEEEEC
T ss_pred cceEEEEEcCCCC-eEEecC-----CceEEEEeee
Confidence 8999999999999 999999 9999999986
No 30
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-32 Score=278.00 Aligned_cols=290 Identities=16% Similarity=0.199 Sum_probs=215.1
Q ss_pred CcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccC-cceeeee--c-CC-CeeEEEecCCCCEEEEEcCCCCCC
Q 005140 205 PEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANT-FNRLMRY--A-HP-QVKLIDFSPGEKYLVTYSSHEPSN 278 (712)
Q Consensus 205 ~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~-~~~~~~~--~-~~-~v~~i~~Spdg~~l~t~s~d~~~~ 278 (712)
....+++|...|.+++|+|+ +||+++.|+ |+||++.+. ...+..+ . |. .|.+++|+|++++|++++.|
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D---- 79 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD---- 79 (330)
T ss_dssp EEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT----
T ss_pred cceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC----
Confidence 44567899999999999998 999999999 889999822 2333333 2 54 49999999999999999999
Q ss_pred CcCCCccEEEEEEccC-------CceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCc
Q 005140 279 PRDANRVVINIFDVRT-------GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESF 350 (712)
Q Consensus 279 ~~~~~~~~I~iwd~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~ 350 (712)
++|+|||+.. .+.+..+.+|...+. +++|+| ++++|++++ |++|++|++...
T Consensus 80 ------~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~-------------~v~~sp-~g~~las~s~D~~v~iwd~~~~ 139 (330)
T 2hes_X 80 ------STVSIWAKEESADRTFEMDLLAIIEGHENEVK-------------GVAWSN-DGYYLATCSRDKSVWIWETDES 139 (330)
T ss_dssp ------SCEEEEEC-------CCCEEEEEEC----CEE-------------EEEECT-TSCEEEEEETTSCEEEEECCTT
T ss_pred ------CcEEEEEcccCcCccccceeEEEEcCCCCcEE-------------EEEECC-CCCEEEEEeCCCEEEEEeccCC
Confidence 9999999843 346677888877763 799999 999999999 999999999432
Q ss_pred ----eecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEE
Q 005140 351 ----TLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAV 426 (712)
Q Consensus 351 ----~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~ 426 (712)
..+.....|...|.+++|+|++.+|++ ++.|+.+++|......
T Consensus 140 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s-----~s~D~~i~iW~~~~~~---------------------------- 186 (330)
T 2hes_X 140 GEEYECISVLQEHSQDVKHVIWHPSEALLAS-----SSYDDTVRIWKDYDDD---------------------------- 186 (330)
T ss_dssp CCCCEEEEEECCCSSCEEEEEECSSSSEEEE-----EETTSCEEEEEEETTE----------------------------
T ss_pred CCCeEEEEEeccCCCceEEEEECCCCCEEEE-----EcCCCeEEEEECCCCC----------------------------
Confidence 233344456677999999999988888 7777777766432100
Q ss_pred EEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeC--CCEEEEEEcCCCCCeEEEEEeecccccC--
Q 005140 427 KVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK--GHRFAVIHGDSPRPDISFYSMRTAQHAG-- 502 (712)
Q Consensus 427 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~--g~~l~~~~~d~~~~~v~i~d~~~~~~~~-- 502 (712)
......+.+|.+.|.+++|+|+ +.+|++++.|+ .|++|++..+....
T Consensus 187 --------------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~---~v~iw~~~~~~~~~~~ 237 (330)
T 2hes_X 187 --------------------------WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDS---TVRVWKYMGDDEDDQQ 237 (330)
T ss_dssp --------------------------EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTS---CEEEEEEEEECTTSCE
T ss_pred --------------------------eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCC---eEEEEEecCCCccccc
Confidence 0011335588999999999998 77899999999 99999997642111
Q ss_pred ceeEEEEeC---CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcce--eee---ecccc-ceeeEEECC--CCCEEE
Q 005140 503 RVSKLTTLK---GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELE--TMA---TAEHF-MATDVEWDP--TGRYVA 571 (712)
Q Consensus 503 ~~~~~~~~~---~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~--~~~---~~~~~-~v~~~~~sp--dg~~l~ 571 (712)
.......+. ...|.+++|+|++ +|++++. ||.|++|+..+++ .+. ..|.. .|++++|+| +|++|+
T Consensus 238 ~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~---dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~la 313 (330)
T 2hes_X 238 EWVCEAILPDVHKRQVYNVAWGFNG-LIASVGA---DGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILA 313 (330)
T ss_dssp EEEEEEECCSCCSSCEEEEEECTTS-CEEEEET---TSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEE
T ss_pred eeEEeeecccccccceEEEEEcCCC-EEEEEeC---CCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEE
Confidence 112334443 3379999999766 7888887 9999999988663 232 24554 899999999 799999
Q ss_pred EEEccceeccccEEEEEecC
Q 005140 572 TAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 572 t~s~~~~~~d~~v~iw~~~g 591 (712)
+++. |+.|+||++..
T Consensus 314 s~s~-----Dg~v~~W~~~~ 328 (330)
T 2hes_X 314 TGGD-----DGIVNFWSLEK 328 (330)
T ss_dssp EEET-----TSEEEEEEC--
T ss_pred EecC-----CCcEEEEEecc
Confidence 9999 99999999753
No 31
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=8.6e-32 Score=274.17 Aligned_cols=272 Identities=13% Similarity=0.160 Sum_probs=221.5
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC
Q 005140 252 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 331 (712)
Q Consensus 252 ~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg 331 (712)
+...|.+++|||+|++|++++.| ++|++||+.++..++.+..|...+. +++|+| ++
T Consensus 12 h~~~V~~~~fsp~~~~l~s~~~d----------g~v~lWd~~~~~~~~~~~~~~~~v~-------------~~~~~~-~~ 67 (304)
T 2ynn_A 12 RSDRVKGIDFHPTEPWVLTTLYS----------GRVELWNYETQVEVRSIQVTETPVR-------------AGKFIA-RK 67 (304)
T ss_dssp ECSCEEEEEECSSSSEEEEEETT----------SEEEEEETTTTEEEEEEECCSSCEE-------------EEEEEG-GG
T ss_pred CCCceEEEEECCCCCEEEEEcCC----------CcEEEEECCCCceeEEeeccCCcEE-------------EEEEeC-CC
Confidence 44569999999999999999999 9999999999999999998877653 689999 99
Q ss_pred CEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeee
Q 005140 332 KYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV 410 (712)
Q Consensus 332 ~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 410 (712)
++|++++ |+.|++||+.+++.+.....|...|.+++|+|++++|++ ++.|+.+++|.+.. .
T Consensus 68 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-----gs~D~~v~lWd~~~--~----------- 129 (304)
T 2ynn_A 68 NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS-----GSDDLTVKLWNWEN--N----------- 129 (304)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEE-----EETTSCEEEEEGGG--T-----------
T ss_pred CEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEE-----ECCCCeEEEEECCC--C-----------
Confidence 9999999 999999999999887777778888999999999999988 77787777664321 0
Q ss_pred cceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee-CCCEEEEEEcCCCCCe
Q 005140 411 SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHRFAVIHGDSPRPD 489 (712)
Q Consensus 411 ~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~~~~~d~~~~~ 489 (712)
.. ....+.+|...|.+++|+| ++.+|++++.|+ .
T Consensus 130 -----------~~-------------------------------~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~---~ 164 (304)
T 2ynn_A 130 -----------WA-------------------------------LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR---T 164 (304)
T ss_dssp -----------TE-------------------------------EEEEECCCCSCEEEEEECTTCTTEEEEEETTS---E
T ss_pred -----------cc-------------------------------hhhhhcccCCcEEEEEECCCCCCEEEEEeCCC---e
Confidence 00 0123457899999999999 678999999999 9
Q ss_pred EEEEEeecccccCceeEEEEeCCCceeEEEEcc--CCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECC
Q 005140 490 ISFYSMRTAQHAGRVSKLTTLKGKQANALFWSP--SGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDP 565 (712)
Q Consensus 490 v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~sp--dg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~sp 565 (712)
|++||+.+.... ..+.......+..+.|+| ++.+|++++. |+.|++||+.+++++.+ .|...|++++|+|
T Consensus 165 v~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~---D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p 238 (304)
T 2ynn_A 165 VKVWSLGQSTPN---FTLTTGQERGVNYVDYYPLPDKPYMITASD---DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP 238 (304)
T ss_dssp EEEEETTCSSCS---EEEECCCTTCEEEEEECCSTTCCEEEEEET---TSEEEEEETTTTEEEEEEECCSSCEEEEEECS
T ss_pred EEEEECCCCCcc---ceeccCCcCcEEEEEEEEcCCCCEEEEEcC---CCeEEEEeCCCCccceeeCCCCCCEEEEEECC
Confidence 999999654421 112222234688889987 7889999998 99999999999887765 6778999999999
Q ss_pred CCCEEEEEEccceeccccEEEEEecC-ceeeee--cccceeeeEEecCCC--CCCChhhHH
Q 005140 566 TGRYVATAVTSVHEMENGFNIWSFNG-KLLYRT--LKDHFFQFLWRPRPP--SFLTPEKEE 621 (712)
Q Consensus 566 dg~~l~t~s~~~~~~d~~v~iw~~~g-~~~~~~--~~~~i~~~~w~p~~~--~l~s~~~d~ 621 (712)
++++|++++. |+.|+||+... +++... +...+++++|+|++. ++++++.++
T Consensus 239 ~~~~l~s~s~-----Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g 294 (304)
T 2ynn_A 239 TLPIIISGSE-----DGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG 294 (304)
T ss_dssp SSSEEEEEET-----TSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE
T ss_pred CCCEEEEEcC-----CCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc
Confidence 9999999999 99999999874 444443 557899999999886 456665543
No 32
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.8e-32 Score=289.68 Aligned_cols=320 Identities=8% Similarity=0.054 Sum_probs=250.5
Q ss_pred cccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEE
Q 005140 214 WTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFD 291 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd 291 (712)
..+++++|||+|++|++++.++ +++|+.. +......+.... +....|+|++++|++++.+ +.|++||
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----------g~i~iwd 125 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTI-IRDGSKMLKRADYTAVDTAKLQMRRFILGTTE----------GDIKVLD 125 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECC-SEETTTTSCSCCEEEEEEECSSSCEEEEEETT----------SCEEEEC
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEec-ccceeeEEecCCceEEEEEecCCCEEEEEECC----------CCEEEEe
Confidence 4466899999999999999998 8899998 666555554335 5566889999999999999 9999999
Q ss_pred ccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECC
Q 005140 292 VRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSP 370 (712)
Q Consensus 292 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp 370 (712)
+.+++.+..+.+|...+. +++|+| ++++|++++ |+.|++||+.+++.+.....|...|.+++|+|
T Consensus 126 ~~~~~~~~~~~~h~~~v~-------------~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 191 (420)
T 3vl1_A 126 SNFNLQREIDQAHVSEIT-------------KLKFFP-SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID 191 (420)
T ss_dssp TTSCEEEEETTSSSSCEE-------------EEEECT-TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET
T ss_pred CCCcceeeecccccCccE-------------EEEECC-CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC
Confidence 999999988888887764 799999 999999999 99999999999888777767888899999999
Q ss_pred CCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeee------------------------eeecceeEEECcCCCEEEE
Q 005140 371 TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL------------------------FSVSDCKMYWQSSGDYLAV 426 (712)
Q Consensus 371 ~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~s~~g~~l~~ 426 (712)
++++|++ ++.++.+++| ++.+.+.+..... .......+.|+|+|++|++
T Consensus 192 ~~~~l~s-----~~~d~~v~iw--d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 264 (420)
T 3vl1_A 192 RGRNVLS-----ASLDGTIRLW--ECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIA 264 (420)
T ss_dssp TTTEEEE-----EETTSCEEEE--ETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEE
T ss_pred CCCEEEE-----EcCCCcEEEe--ECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEE
Confidence 9999998 6677766655 5544443332221 1123344678999999999
Q ss_pred EEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCC-EEEEEEcCCCCCeEEEEEeecccccCcee
Q 005140 427 KVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGH-RFAVIHGDSPRPDISFYSMRTAQHAGRVS 505 (712)
Q Consensus 427 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~-~l~~~~~d~~~~~v~i~d~~~~~~~~~~~ 505 (712)
+..++. +.+|++....... ....+|...|.+++|+|++. +|++++.|+ .|++||++++... ..
T Consensus 265 ~~~dg~---------i~i~d~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg---~i~vwd~~~~~~~--~~ 328 (420)
T 3vl1_A 265 GHVSGV---------ITVHNVFSKEQTI--QLPSKFTCSCNSLTVDGNNANYIYAGYENG---MLAQWDLRSPECP--VG 328 (420)
T ss_dssp EETTSC---------EEEEETTTCCEEE--EECCTTSSCEEEEEECSSCTTEEEEEETTS---EEEEEETTCTTSC--SE
T ss_pred EcCCCe---------EEEEECCCCceeE--EcccccCCCceeEEEeCCCCCEEEEEeCCC---eEEEEEcCCCcCc--hh
Confidence 999877 8899886543221 22336789999999999999 999999999 9999999765421 12
Q ss_pred EEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcce-----------eeeeccccceeeEEECCCCC---EEE
Q 005140 506 KLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELE-----------TMATAEHFMATDVEWDPTGR---YVA 571 (712)
Q Consensus 506 ~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~-----------~~~~~~~~~v~~~~~spdg~---~l~ 571 (712)
.+.......++++. +|+|++|++++. ||.|++|++.... .....+...+.+++|+|+|+ .|+
T Consensus 329 ~~~~~~~~~v~~~~-~~~~~~l~s~~~---d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~ 404 (420)
T 3vl1_A 329 EFLINEGTPINNVY-FAAGALFVSSGF---DTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVL 404 (420)
T ss_dssp EEEESTTSCEEEEE-EETTEEEEEETT---TEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEE
T ss_pred hhhccCCCCceEEE-eCCCCEEEEecC---CccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEE
Confidence 22222345677774 567889999988 9999999987521 12235667899999999999 777
Q ss_pred EEEccceeccccEEEEEec
Q 005140 572 TAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 572 t~s~~~~~~d~~v~iw~~~ 590 (712)
+++. ++.+.+|++.
T Consensus 405 a~g~-----~g~~~~~~~~ 418 (420)
T 3vl1_A 405 EVGK-----NNFCALYNLS 418 (420)
T ss_dssp EEET-----TTEEEEEESC
T ss_pred EEcC-----CceEEEEecc
Confidence 7777 7999999975
No 33
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-31 Score=275.87 Aligned_cols=296 Identities=18% Similarity=0.217 Sum_probs=226.4
Q ss_pred cccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-CC-CeeEEEecCCCCEEEEEcCCCCCCCcCC
Q 005140 206 EPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDA 282 (712)
Q Consensus 206 ~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~ 282 (712)
...+.+|...|++++|||+|++||+++.++ |+||+.. +.+.+..+. |. .|.+++|+|++++|++++.+
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-------- 95 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSL-NGERLGTLDGHTGTIWSIDVDCFTKYCVTGSAD-------- 95 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETT-TCCEEEEECCCSSCEEEEEECTTSSEEEEEETT--------
T ss_pred cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCC--------
Confidence 345789999999999999999999999998 8899998 777777774 44 49999999999999999999
Q ss_pred CccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-C-----CeEEEEEcCCceecccc
Q 005140 283 NRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-K-----NMISVYETESFTLIDKK 356 (712)
Q Consensus 283 ~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d-----~~i~iwd~~~~~~~~~~ 356 (712)
+.|++||+.+++.+..+... ..+. +++|+| ++++|++++ + +.|.+|++.........
T Consensus 96 --g~i~iwd~~~~~~~~~~~~~-~~v~-------------~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~ 158 (369)
T 3zwl_B 96 --YSIKLWDVSNGQCVATWKSP-VPVK-------------RVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHEL 158 (369)
T ss_dssp --TEEEEEETTTCCEEEEEECS-SCEE-------------EEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCE
T ss_pred --CeEEEEECCCCcEEEEeecC-CCeE-------------EEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceee
Confidence 99999999999998888733 3332 799999 999999988 6 89999998855432211
Q ss_pred cccc-cCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccc
Q 005140 357 SLKV-ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTK 435 (712)
Q Consensus 357 ~~~~-~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~ 435 (712)
.... ..+..+... . .......+.|+|+|++|+++..++.
T Consensus 159 ~~~~~~~~~~~~~~----------------~---------------------~~~~~~~~~~~~~~~~l~~~~~dg~--- 198 (369)
T 3zwl_B 159 TKVSEEPIHKIITH----------------E---------------------GLDAATVAGWSTKGKYIIAGHKDGK--- 198 (369)
T ss_dssp EEECSSCSEEEECC----------------T---------------------TCCCEEEEEECGGGCEEEEEETTSE---
T ss_pred cccccceeeeccCC----------------c---------------------CccceeEEEEcCCCCEEEEEcCCCE---
Confidence 0000 000000000 0 0001223456666666666666554
Q ss_pred ccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-CCc
Q 005140 436 KSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQ 514 (712)
Q Consensus 436 ~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~ 514 (712)
+.+|++...... ...+..|...|.+++|+|++++|++++.++ .|++||+.++. .+..+. ...
T Consensus 199 ------i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~v~d~~~~~------~~~~~~~~~~ 261 (369)
T 3zwl_B 199 ------ISKYDVSNNYEY--VDSIDLHEKSISDMQFSPDLTYFITSSRDT---NSFLVDVSTLQ------VLKKYETDCP 261 (369)
T ss_dssp ------EEEEETTTTTEE--EEEEECCSSCEEEEEECTTSSEEEEEETTS---EEEEEETTTCC------EEEEEECSSC
T ss_pred ------EEEEECCCCcEe--EEEEecCCCceeEEEECCCCCEEEEecCCc---eEEEEECCCCc------eeeeecCCCC
Confidence 566665542222 234556889999999999999999999999 99999997654 334433 457
Q ss_pred eeEEEEccCCCeEEEEeccCCCc--------------eEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccce
Q 005140 515 ANALFWSPSGRFIVLAGLKGFNG--------------QLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVH 578 (712)
Q Consensus 515 v~~l~~spdg~~l~~~~~~~~dg--------------~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~ 578 (712)
+..++|+|+|+++++++. ++ .+++||+.+++.+.. .|...|++++|+|+|++|++++.
T Consensus 262 ~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~--- 335 (369)
T 3zwl_B 262 LNTAVITPLKEFIILGGG---QEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGE--- 335 (369)
T ss_dssp EEEEEECSSSSEEEEEEC---CC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET---
T ss_pred ceeEEecCCCceEEEeec---CCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcC---
Confidence 899999999999999987 65 899999998887765 57789999999999999999999
Q ss_pred eccccEEEEEecCc
Q 005140 579 EMENGFNIWSFNGK 592 (712)
Q Consensus 579 ~~d~~v~iw~~~g~ 592 (712)
|+.|+||++...
T Consensus 336 --dg~v~iw~~~~~ 347 (369)
T 3zwl_B 336 --DGFIRLHHFEKS 347 (369)
T ss_dssp --TSEEEEEEECHH
T ss_pred --CCeEEEEECccc
Confidence 999999999743
No 34
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-31 Score=275.24 Aligned_cols=265 Identities=15% Similarity=0.206 Sum_probs=220.8
Q ss_pred ceEEEEECCeeEEEecCCCCC-CCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-C-CCeeE
Q 005140 183 DQFVIRSGTDTEVLWNDARHL-KPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-H-PQVKL 258 (712)
Q Consensus 183 ~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~-~~v~~ 258 (712)
..++.++.|+++.+|+..... .....+.+|...|.+++|+|++.++|+++.|+ |+|||+. +++.+..+. + ..+.+
T Consensus 49 ~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~-~~~~~~~~~~~~~~~~~ 127 (321)
T 3ow8_A 49 ETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE-NGKQIKSIDAGPVDAWT 127 (321)
T ss_dssp CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT-TTEEEEEEECCTTCCCC
T ss_pred CEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC-CCCEEEEEeCCCccEEE
Confidence 467778889999999973221 23345789999999999999999999999999 8899999 777776664 3 34899
Q ss_pred EEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec
Q 005140 259 IDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG 338 (712)
Q Consensus 259 i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~ 338 (712)
++|+|+|++|++++.+ +.|++|++.+++....+..+...+. +++|+| ++++|++++
T Consensus 128 ~~~spdg~~l~~g~~d----------g~v~i~~~~~~~~~~~~~~~~~~v~-------------~~~~sp-dg~~lasg~ 183 (321)
T 3ow8_A 128 LAFSPDSQYLATGTHV----------GKVNIFGVESGKKEYSLDTRGKFIL-------------SIAYSP-DGKYLASGA 183 (321)
T ss_dssp EEECTTSSEEEEECTT----------SEEEEEETTTCSEEEEEECSSSCEE-------------EEEECT-TSSEEEEEE
T ss_pred EEECCCCCEEEEEcCC----------CcEEEEEcCCCceeEEecCCCceEE-------------EEEECC-CCCEEEEEc
Confidence 9999999999999999 9999999999999888887766553 799999 999999999
Q ss_pred -CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEE
Q 005140 339 -KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYW 417 (712)
Q Consensus 339 -d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (712)
|+.|++||+.+++.+.....|...|.+++|+|++++|++ ++.++.+++|.. ....
T Consensus 184 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s-----~s~dg~i~iwd~--~~~~----------------- 239 (321)
T 3ow8_A 184 IDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVT-----ASDDGYIKIYDV--QHAN----------------- 239 (321)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEE-----ECTTSCEEEEET--TTCC-----------------
T ss_pred CCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEE-----EcCCCeEEEEEC--CCcc-----------------
Confidence 999999999999887777677788999999999999998 777777665532 1110
Q ss_pred CcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeec
Q 005140 418 QSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRT 497 (712)
Q Consensus 418 s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~ 497 (712)
....+.+|...|.+++|+|++++|++++.|+ .|++||+.+
T Consensus 240 -------------------------------------~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~---~v~iwd~~~ 279 (321)
T 3ow8_A 240 -------------------------------------LAGTLSGHASWVLNVAFCPDDTHFVSSSSDK---SVKVWDVGT 279 (321)
T ss_dssp -------------------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTS---CEEEEETTT
T ss_pred -------------------------------------eeEEEcCCCCceEEEEECCCCCEEEEEeCCC---cEEEEeCCC
Confidence 0123457899999999999999999999999 999999976
Q ss_pred ccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 498 AQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 498 ~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
+. .+..+.++ .|.+++|+|+|++|++++. ||.|++||+.
T Consensus 280 ~~------~~~~~~~h~~~v~~v~~s~~g~~l~s~~~---d~~i~vwd~p 320 (321)
T 3ow8_A 280 RT------CVHTFFDHQDQVWGVKYNGNGSKIVSVGD---DQEIHIYDCP 320 (321)
T ss_dssp TE------EEEEECCCSSCEEEEEECTTSSEEEEEET---TCCEEEEECC
T ss_pred CE------EEEEEcCCCCcEEEEEECCCCCEEEEEeC---CCeEEEEeCC
Confidence 54 56666544 6999999999999999998 9999999974
No 35
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=7.1e-32 Score=279.48 Aligned_cols=270 Identities=12% Similarity=0.165 Sum_probs=215.0
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC
Q 005140 252 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 331 (712)
Q Consensus 252 ~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg 331 (712)
|...|.+++|+|+|++|++++.| ++|+|||+.+++.+..+..|...+. +++|+| ++
T Consensus 54 H~~~v~~~~~s~d~~~l~s~s~D----------g~v~iWd~~~~~~~~~~~~~~~~v~-------------~~~~s~-~~ 109 (340)
T 1got_B 54 HLAKIYAMHWGTDSRLLLSASQD----------GKLIIWDSYTTNKVHAIPLRSSWVM-------------TCAYAP-SG 109 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETT----------TEEEEEETTTCCEEEEEECSSSCEE-------------EEEECT-TS
T ss_pred CCCceEEEEECCCCCEEEEEeCC----------CcEEEEECCCCCcceEeecCCccEE-------------EEEECC-CC
Confidence 34459999999999999999999 9999999999999999988877653 689999 99
Q ss_pred CEEEEec-CCeEEEEEcCCce----ecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeee
Q 005140 332 KYFAKLG-KNMISVYETESFT----LIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKN 406 (712)
Q Consensus 332 ~~la~~~-d~~i~iwd~~~~~----~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 406 (712)
++|++++ |+.|++|++.+.. .......|...|.++.|+|++. +++ ++.++.+++|
T Consensus 110 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s-----~s~d~~i~~w-------------- 169 (340)
T 1got_B 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVT-----SSGDTTCALW-------------- 169 (340)
T ss_dssp SEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEE-----EETTSCEEEE--------------
T ss_pred CEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEE-----EECCCcEEEE--------------
Confidence 9999999 9999999987643 2222334556677777777665 444 4455554443
Q ss_pred eeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCC
Q 005140 407 LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSP 486 (712)
Q Consensus 407 ~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~ 486 (712)
++... .....+.+|.+.|.+++|+|++++|++++.|+
T Consensus 170 ---------------------------------------d~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~- 206 (340)
T 1got_B 170 ---------------------------------------DIETG---QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA- 206 (340)
T ss_dssp ---------------------------------------ETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEETTS-
T ss_pred ---------------------------------------ECCCC---cEEEEEcCCCCceEEEEECCCCCEEEEEeCCC-
Confidence 22111 01133557899999999999999999999999
Q ss_pred CCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeecc----ccceee
Q 005140 487 RPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE----HFMATD 560 (712)
Q Consensus 487 ~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~----~~~v~~ 560 (712)
.|++||++++. .+..+.+| .+++++|+|+|++|++++. ||.|++||+.+++.+.... ...+++
T Consensus 207 --~v~~wd~~~~~------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~---d~~v~iwd~~~~~~~~~~~~~~~~~~v~~ 275 (340)
T 1got_B 207 --SAKLWDVREGM------CRQTFTGHESDINAICFFPNGNAFATGSD---DATCRLFDLRADQELMTYSHDNIICGITS 275 (340)
T ss_dssp --CEEEEETTTCS------EEEEECCCSSCEEEEEECTTSSEEEEEET---TSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred --cEEEEECCCCe------eEEEEcCCcCCEEEEEEcCCCCEEEEEcC---CCcEEEEECCCCcEEEEEccCCcccceEE
Confidence 99999997654 45556544 6999999999999999998 9999999999877665432 246899
Q ss_pred EEECCCCCEEEEEEccceeccccEEEEEec-Cceeee--ecccceeeeEEecCCCCCCChhhHHHHH
Q 005140 561 VEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYR--TLKDHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 561 ~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~--~~~~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
++|+|+|++|++++. |+.+++|++. +..+.. .|...|.+++|+|++..|+|++.|+.|+
T Consensus 276 ~~~s~~g~~l~~g~~-----d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~ 337 (340)
T 1got_B 276 VSFSKSGRLLLAGYD-----DFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLK 337 (340)
T ss_dssp EEECTTSSEEEEEET-----TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred EEECCCCCEEEEECC-----CCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEE
Confidence 999999999999999 9999999976 444433 3778999999999999999999887654
No 36
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.6e-31 Score=274.51 Aligned_cols=312 Identities=13% Similarity=0.149 Sum_probs=241.8
Q ss_pred chhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcce---
Q 005140 172 LQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNR--- 247 (712)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~--- 247 (712)
+.....+|+|+ .+++...++..+.|..+.... .....+|...|++++|+|+|++|++++ ++ ++||+.. +...
T Consensus 12 v~~~~~s~dg~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~-~~~~~~~ 87 (337)
T 1gxr_A 12 AYSFHVTADGQ-MQPVPFPPDALIGPGIPRHAR-QINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDIS-HPGNKSP 87 (337)
T ss_dssp CCEEEECSSSC-EEECCCCTTSSSSTTCCSEEE-EEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETT-STTCCSC
T ss_pred eeEEEECCCCC-EEEeecCCCcEeccccCCccc-cceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECC-CCCceee
Confidence 34556677776 333444444455665533222 333457999999999999999999999 66 8899997 4432
Q ss_pred eeee---cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc--eeeeccCCCcccccCCCCCcCCCCc
Q 005140 248 LMRY---AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK--VMRDFKGSADEFAVGGTGGVAGVSW 321 (712)
Q Consensus 248 ~~~~---~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (712)
+..+ .|. .|.+++|+|++++|++++.+ +.|++||+.+++ ....+..|...+.
T Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------~~i~~~d~~~~~~~~~~~~~~~~~~i~------------ 145 (337)
T 1gxr_A 88 VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA----------STLSIWDLAAPTPRIKAELTSSAPACY------------ 145 (337)
T ss_dssp SEEEECSCTTSBEEEEEECTTSSEEEEEESS----------SEEEEEECCCC--EEEEEEECSSSCEE------------
T ss_pred eecccccCCCCcEEEEEEcCCCCEEEEEcCC----------CcEEEEECCCCCcceeeecccCCCceE------------
Confidence 2221 344 49999999999999999999 999999998887 5666777766543
Q ss_pred CeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc
Q 005140 322 PVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE 400 (712)
Q Consensus 322 ~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~ 400 (712)
+++|+| ++++|++++ ++.|.+|++.+++.+.....|...+.+++|+|++++|++ ++.++ .|.+|++.+.+
T Consensus 146 -~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-----~~~dg--~i~~~d~~~~~ 216 (337)
T 1gxr_A 146 -ALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWT-----GGLDN--TVRSWDLREGR 216 (337)
T ss_dssp -EEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE-----EETTS--EEEEEETTTTE
T ss_pred -EEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEE-----EecCC--cEEEEECCCCc
Confidence 689999 999999998 999999999998877766667788999999999999998 44554 46667776665
Q ss_pred ceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEE
Q 005140 401 ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAV 480 (712)
Q Consensus 401 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~ 480 (712)
.+.... +......+.|+|+|++++++..++. +.+|++.... ...+..|...|.+++|+|++++|++
T Consensus 217 ~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~---------i~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~ 282 (337)
T 1gxr_A 217 QLQQHD-FTSQIFSLGYCPTGEWLAVGMESSN---------VEVLHVNKPD----KYQLHLHESCVLSLKFAYCGKWFVS 282 (337)
T ss_dssp EEEEEE-CSSCEEEEEECTTSSEEEEEETTSC---------EEEEETTSSC----EEEECCCSSCEEEEEECTTSSEEEE
T ss_pred eEeeec-CCCceEEEEECCCCCEEEEEcCCCc---------EEEEECCCCC----eEEEcCCccceeEEEECCCCCEEEE
Confidence 544433 3445667899999999999988776 7888876543 2456688999999999999999999
Q ss_pred EEcCCCCCeEEEEEeecccccCceeEEEEe-CCCceeEEEEccCCCeEEEEeccCCCceEEEEEC
Q 005140 481 IHGDSPRPDISFYSMRTAQHAGRVSKLTTL-KGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNV 544 (712)
Q Consensus 481 ~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~-~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~ 544 (712)
++.++ .|++|++.++. .+... ....+.+++|+|+|++|++++. ||.|++|++
T Consensus 283 ~~~dg---~i~~~~~~~~~------~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iw~~ 335 (337)
T 1gxr_A 283 TGKDN---LLNAWRTPYGA------SIFQSKESSSVLSCDISVDDKYIVTGSG---DKKATVYEV 335 (337)
T ss_dssp EETTS---EEEEEETTTCC------EEEEEECSSCEEEEEECTTSCEEEEEET---TSCEEEEEE
T ss_pred ecCCC---cEEEEECCCCe------EEEEecCCCcEEEEEECCCCCEEEEecC---CCeEEEEEE
Confidence 99999 99999997654 22222 3557999999999999999998 999999986
No 37
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-31 Score=286.58 Aligned_cols=323 Identities=10% Similarity=0.193 Sum_probs=241.7
Q ss_pred EEeecccCcceeeee-cC-CCeeEEEecCCCC-EEEEEcCCCCCCCcCCCccEEEEEEc----cCCc------eeeeccC
Q 005140 237 AVWGGANTFNRLMRY-AH-PQVKLIDFSPGEK-YLVTYSSHEPSNPRDANRVVINIFDV----RTGK------VMRDFKG 303 (712)
Q Consensus 237 ~iw~~~~~~~~~~~~-~~-~~v~~i~~Spdg~-~l~t~s~d~~~~~~~~~~~~I~iwd~----~~g~------~~~~~~~ 303 (712)
.+|+.. ........ .| ..|.+++|+|+|+ +||+++.+ +.|++|++ .+++ ....+..
T Consensus 28 ~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d----------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 96 (425)
T 1r5m_A 28 SSDDLD-GFVKILKEIVKLDNIVSSTWNPLDESILAYGEKN----------SVARLARIVETDQEGKKYWKLTIIAELRH 96 (425)
T ss_dssp -------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETB----------TEEEEEEEEEC------CEEEEEEEEEEC
T ss_pred ccccch-hhhhheeeeeccCceEEEEECCCCCcEEEEecCC----------ceEEEEEEecccCCccccccccccccccc
Confidence 478887 44444443 33 4599999999999 99999999 99999999 8888 4444443
Q ss_pred ----------CCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCC
Q 005140 304 ----------SADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTD 372 (712)
Q Consensus 304 ----------~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~ 372 (712)
|...+. +++|+| ++++|++++ ++.|.+|+ .++..+.....|...|.+++|+|++
T Consensus 97 ~~~~~~~~~~~~~~v~-------------~~~~s~-~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (425)
T 1r5m_A 97 PFALSASSGKTTNQVT-------------CLAWSH-DGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDG 161 (425)
T ss_dssp CCCCC------CBCEE-------------EEEECT-TSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTS
T ss_pred cccccccccCCCCceE-------------EEEEcC-CCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCC
Confidence 232332 799999 999999998 99999999 5566665666677889999999999
Q ss_pred CeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeec---------------ceeEEECcCCCEEEEEEccccccccc
Q 005140 373 PIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVS---------------DCKMYWQSSGDYLAVKVDRYTKTKKS 437 (712)
Q Consensus 373 ~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---------------~~~~~~s~~g~~l~~~~~~~~~~~~~ 437 (712)
++|++ ++.++.+ .+|++.+.+.+......... ...+.|++++. ++++..++.
T Consensus 162 ~~l~~-----~~~d~~i--~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~----- 228 (425)
T 1r5m_A 162 THIIS-----MDVENVT--ILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGPKGA----- 228 (425)
T ss_dssp SEEEE-----EETTCCE--EEEETTTTEEEEEECCC---------------CCCBSCCEEEETTE-EEEECGGGC-----
T ss_pred CEEEE-----EecCCeE--EEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCE-EEEEcCCCe-----
Confidence 99998 5566554 45666665555444433333 56678888865 666666655
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCce
Q 005140 438 TYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQA 515 (712)
Q Consensus 438 ~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v 515 (712)
+.+|++..... ...+.+|...|.+++|+|++++|++++.++ .|++|++.++.. +..+. ...+
T Consensus 229 ----i~~~d~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~------~~~~~~~~~~i 292 (425)
T 1r5m_A 229 ----IFVYQITEKTP---TGKLIGHHGPISVLEFNDTNKLLLSASDDG---TLRIWHGGNGNS------QNCFYGHSQSI 292 (425)
T ss_dssp ----EEEEETTCSSC---SEEECCCSSCEEEEEEETTTTEEEEEETTS---CEEEECSSSBSC------SEEECCCSSCE
T ss_pred ----EEEEEcCCCce---eeeeccCCCceEEEEECCCCCEEEEEcCCC---EEEEEECCCCcc------ceEecCCCccE
Confidence 78888765422 234567899999999999999999999999 999999976542 33333 4479
Q ss_pred eEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecC-c
Q 005140 516 NALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG-K 592 (712)
Q Consensus 516 ~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g-~ 592 (712)
.+++|+|+| ++++++. +|.|++||+.+++.+.. .|...+++++|+|+|++|++++. |+.|++|++.. .
T Consensus 293 ~~~~~~~~~-~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-----dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 293 VSASWVGDD-KVISCSM---DGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFM-----DGQVNVYDLKKLN 363 (425)
T ss_dssp EEEEEETTT-EEEEEET---TSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEET-----TSCEEEEECHHHH
T ss_pred EEEEECCCC-EEEEEeC---CCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEEC-----CCeEEEEECCCCc
Confidence 999999999 8888888 99999999998887765 56689999999999999999999 99999999973 3
Q ss_pred --------------------eeeee--ccc--ceeeeEEecCCCCCCChhhHHHH
Q 005140 593 --------------------LLYRT--LKD--HFFQFLWRPRPPSFLTPEKEEEI 623 (712)
Q Consensus 593 --------------------~~~~~--~~~--~i~~~~w~p~~~~l~s~~~d~~i 623 (712)
.+... +.. .+.+++|+|++++|++++.++.|
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 418 (425)
T 1r5m_A 364 SKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEG 418 (425)
T ss_dssp C--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCC
T ss_pred cceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceE
Confidence 33333 333 89999999999999998887654
No 38
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.9e-32 Score=285.47 Aligned_cols=312 Identities=13% Similarity=0.157 Sum_probs=200.9
Q ss_pred cceEEEcCCCcEEEEEecCceEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC
Q 005140 216 ESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG 295 (712)
Q Consensus 216 v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g 295 (712)
-..+.+++++.|+.+.+......|++. ...+. .|...|.+++|||||++||+++.+... --++.|++|+..++
T Consensus 8 ~sg~d~g~~~~~~~~~g~~~~~~w~~p-~~~p~--~H~~~V~~v~fSpDG~~las~s~d~~~----~wd~~v~~~~~~~~ 80 (357)
T 4g56_B 8 SSGVDLGTENLYFQSNGSSKGSAWGRP-VTAPA--CMEVQIGAVRYRRDGALLLAASSLSSR----TWGGSIWVFKDPEG 80 (357)
T ss_dssp -----------------------------------CCCSEEEEEEECSSSCEEEEEECSSSS----SCCEEEEEESSCC-
T ss_pred ccCCCCCccceEEecCCCccccccCCC-CCCcc--cccCCEEEEEECCCCCEEEEEcCCCCc----cccCeEEEEECCCC
Confidence 345778888888777666668899987 33221 233349999999999999999974110 00178999998877
Q ss_pred ceeeecc----CCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceeccccc----ccccCeeeEE
Q 005140 296 KVMRDFK----GSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKS----LKVENVMDFS 367 (712)
Q Consensus 296 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~----~~~~~v~~~~ 367 (712)
.....+. .|...+. +++|+| ++.+++++.+++|+|||+.+++.+.... .|...|.+++
T Consensus 81 ~~~~~~~~~~~~~~~~V~-------------~~~~s~-d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~ 146 (357)
T 4g56_B 81 APNESLCTAGVQTEAGVT-------------DVAWVS-EKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLS 146 (357)
T ss_dssp --CGGGCSEEEECSSCEE-------------EEEEET-TTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEE
T ss_pred CcceeEecccCCCCCCEE-------------EEEEcC-CCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEE
Confidence 6544332 3333332 799999 9988887779999999998776443221 3556789999
Q ss_pred ECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEE
Q 005140 368 WSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRI 447 (712)
Q Consensus 368 ~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l 447 (712)
|+|++++|++ ++.++.+++|. ..+.+
T Consensus 147 ~spdg~~l~s-----gs~dg~v~iwd--~~~~~----------------------------------------------- 172 (357)
T 4g56_B 147 VFSDGTQAVS-----GGKDFSVKVWD--LSQKA----------------------------------------------- 172 (357)
T ss_dssp ECSSSSEEEE-----EETTSCEEEEE--TTTTE-----------------------------------------------
T ss_pred ECCCCCEEEE-----EeCCCeEEEEE--CCCCc-----------------------------------------------
Confidence 9999988888 66666665542 22111
Q ss_pred ecCCcceeEEEecCCCCceEEEEEeeCCC-EEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCC
Q 005140 448 KERDIPIEVLELDNKNDKIIAFAWEPKGH-RFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSG 524 (712)
Q Consensus 448 ~~~~~~~~~~~l~~h~~~v~~~~~sp~g~-~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg 524 (712)
....+.+|...|.+++|+|++. +|++++.|+ .|++||++++... ....+. ...+.+++|+|++
T Consensus 173 -------~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg---~v~~wd~~~~~~~----~~~~~~~~~~~v~~v~~sp~~ 238 (357)
T 4g56_B 173 -------VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDG---RILLWDTRKPKPA----TRIDFCASDTIPTSVTWHPEK 238 (357)
T ss_dssp -------EEEEECCCSSCEEEEEECTTCSSCEEEEETTS---CEEECCTTSSSCB----CBCCCTTCCSCEEEEEECTTS
T ss_pred -------EEEEEcCCCCCEEEEEEccCCCceeeeeccCC---ceEEEECCCCcee----eeeeeccccccccchhhhhcc
Confidence 1123457899999999999885 788888899 9999999765431 111122 2368999999985
Q ss_pred -CeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCC-CEEEEEEccceeccccEEEEEecCce-eeee-c
Q 005140 525 -RFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTG-RYVATAVTSVHEMENGFNIWSFNGKL-LYRT-L 598 (712)
Q Consensus 525 -~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg-~~l~t~s~~~~~~d~~v~iw~~~g~~-~~~~-~ 598 (712)
.+|++++. |+.|++||+.+++.+.. .|...|++++|+|+| ++||+++. |+.|+|||+.... +... |
T Consensus 239 ~~~la~g~~---d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~-----D~~i~iwd~~~~~~~~~~~H 310 (357)
T 4g56_B 239 DDTFACGDE---TGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISE-----DCTVAVLDADFSEVFRDLSH 310 (357)
T ss_dssp TTEEEEEES---SSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEET-----TSCEEEECTTSCEEEEECCC
T ss_pred cceEEEeec---ccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeC-----CCEEEEEECCCCcEeEECCC
Confidence 57788887 99999999998877664 567899999999998 57899999 9999999988543 3333 6
Q ss_pred ccceeeeEEec-CCCCCCChhhHHHHH
Q 005140 599 KDHFFQFLWRP-RPPSFLTPEKEEEIA 624 (712)
Q Consensus 599 ~~~i~~~~w~p-~~~~l~s~~~d~~i~ 624 (712)
.+.|++++|+| ++..|+|++.|+.|+
T Consensus 311 ~~~V~~vafsP~d~~~l~s~s~Dg~v~ 337 (357)
T 4g56_B 311 RDFVTGVAWSPLDHSKFTTVGWDHKVL 337 (357)
T ss_dssp SSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred CCCEEEEEEeCCCCCEEEEEcCCCeEE
Confidence 78999999999 788999999999876
No 39
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.2e-30 Score=268.17 Aligned_cols=281 Identities=16% Similarity=0.237 Sum_probs=215.9
Q ss_pred cccccCCCcccceEEEcCC-CcEEEEEecCc-eEEeecccCcc-----eeeee-cCC-CeeEEEecCCCCEEEEEcCCCC
Q 005140 206 EPVYKRSYWTESFVQWSPL-GTYLATVHRQG-AAVWGGANTFN-----RLMRY-AHP-QVKLIDFSPGEKYLVTYSSHEP 276 (712)
Q Consensus 206 ~~~~~~~~~~v~~v~~Spd-g~~lat~~~~~-i~iw~~~~~~~-----~~~~~-~~~-~v~~i~~Spdg~~l~t~s~d~~ 276 (712)
..+|++|...|++|+|||+ +++|||++.|+ |+||++. ... ....+ .|. .|.+++|+|+|++|++++.|
T Consensus 31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~-~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d-- 107 (340)
T 4aow_A 31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLT-RDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD-- 107 (340)
T ss_dssp EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEEC-CSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT--
T ss_pred EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECC-CCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc--
Confidence 3468899999999999998 68999999999 8899987 332 22333 244 59999999999999999999
Q ss_pred CCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceec-c
Q 005140 277 SNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLI-D 354 (712)
Q Consensus 277 ~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~-~ 354 (712)
+.|++|+...+........+..... ...+++ ++.+|++++ |+.+++|++...... .
T Consensus 108 --------~~i~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~-~~~~l~s~s~d~~~~~~d~~~~~~~~~ 165 (340)
T 4aow_A 108 --------GTLRLWDLTTGTTTRRFVGHTKDVL-------------SVAFSS-DNRQIVSGSRDKTIKLWNTLGVCKYTV 165 (340)
T ss_dssp --------SEEEEEETTTTEEEEEEECCSSCEE-------------EEEECT-TSSCEEEEETTSCEEEECTTSCEEEEE
T ss_pred --------ccceEEeecccceeeeecCCCCcee-------------EEEEee-cCccceeecCCCeEEEEEeCCCceEEE
Confidence 9999999988887777766655442 578899 999999998 999999998755432 2
Q ss_pred cccccccCeeeEEECCCCC--eEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccc
Q 005140 355 KKSLKVENVMDFSWSPTDP--IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYT 432 (712)
Q Consensus 355 ~~~~~~~~v~~~~~sp~~~--~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~ 432 (712)
....+...+..++|++++. ++++ ++.++.+++| +..+.+
T Consensus 166 ~~~~~~~~v~~~~~~~~~~~~~~~s-----~~~d~~i~i~--d~~~~~-------------------------------- 206 (340)
T 4aow_A 166 QDESHSEWVSCVRFSPNSSNPIIVS-----CGWDKLVKVW--NLANCK-------------------------------- 206 (340)
T ss_dssp CSSSCSSCEEEEEECSCSSSCEEEE-----EETTSCEEEE--ETTTTE--------------------------------
T ss_pred EeccccCcccceEEccCCCCcEEEE-----EcCCCEEEEE--ECCCCc--------------------------------
Confidence 2334556688888887653 3444 3344444433 221110
Q ss_pred cccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC
Q 005140 433 KTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG 512 (712)
Q Consensus 433 ~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~ 512 (712)
....+.+|.+.|.+++|+|++++|++++.|+ .|++||+.+.. .+..+..
T Consensus 207 ----------------------~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg---~i~iwd~~~~~------~~~~~~~ 255 (340)
T 4aow_A 207 ----------------------LKTNHIGHTGYLNTVTVSPDGSLCASGGKDG---QAMLWDLNEGK------HLYTLDG 255 (340)
T ss_dssp ----------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTC---EEEEEETTTTE------EEEEEEC
T ss_pred ----------------------eeeEecCCCCcEEEEEECCCCCEEEEEeCCC---eEEEEEeccCc------eeeeecC
Confidence 1123457899999999999999999999999 99999997654 4555543
Q ss_pred -CceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee-----------ccccceeeEEECCCCCEEEEEEccceec
Q 005140 513 -KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-----------AEHFMATDVEWDPTGRYVATAVTSVHEM 580 (712)
Q Consensus 513 -~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~-----------~~~~~v~~~~~spdg~~l~t~s~~~~~~ 580 (712)
..+.+++|+|++.+++.+ . |+.|++||++++..+.. .|...|++++|+|+|++|++++.
T Consensus 256 ~~~v~~~~~~~~~~~~~~~-~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~----- 326 (340)
T 4aow_A 256 GDIINALCFSPNRYWLCAA-T---GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYT----- 326 (340)
T ss_dssp SSCEEEEEECSSSSEEEEE-E---TTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEET-----
T ss_pred CceEEeeecCCCCceeecc-C---CCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeC-----
Confidence 478999999998766554 4 89999999997665432 45678999999999999999999
Q ss_pred cccEEEEEec
Q 005140 581 ENGFNIWSFN 590 (712)
Q Consensus 581 d~~v~iw~~~ 590 (712)
|+.|+||++.
T Consensus 327 Dg~v~iW~~~ 336 (340)
T 4aow_A 327 DNLVRVWQVT 336 (340)
T ss_dssp TSCEEEEEEE
T ss_pred CCEEEEEeCC
Confidence 9999999986
No 40
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.1e-30 Score=272.01 Aligned_cols=271 Identities=15% Similarity=0.211 Sum_probs=215.0
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC
Q 005140 252 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 331 (712)
Q Consensus 252 ~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg 331 (712)
|...|.+++|+|++++|++++.| ++|+|||..+++....+..+...+. +++|+| +|
T Consensus 63 H~~~V~~~~~s~d~~~l~s~s~D----------g~v~vWd~~~~~~~~~~~~~~~~v~-------------~~~~sp-~g 118 (354)
T 2pbi_B 63 HGNKVLCMDWCKDKRRIVSSSQD----------GKVIVWDSFTTNKEHAVTMPCTWVM-------------ACAYAP-SG 118 (354)
T ss_dssp CSSCEEEEEECTTSSEEEEEETT----------SEEEEEETTTCCEEEEEECSSSCCC-------------EEEECT-TS
T ss_pred CCCeEEEEEECCCCCEEEEEeCC----------CeEEEEECCCCCcceEEecCCCCEE-------------EEEECC-CC
Confidence 34459999999999999999999 9999999999998888887766553 799999 99
Q ss_pred CEEEEec-CCeEEEEEcCCce------ecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceee
Q 005140 332 KYFAKLG-KNMISVYETESFT------LIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ 404 (712)
Q Consensus 332 ~~la~~~-d~~i~iwd~~~~~------~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (712)
.+|++++ |+.+.+|++.... .......|...|.+++|+|++..|++ ++.|+.+++| ++.+.+
T Consensus 119 ~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t-----~s~D~~v~lw--d~~~~~---- 187 (354)
T 2pbi_B 119 CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILT-----ASGDGTCALW--DVESGQ---- 187 (354)
T ss_dssp SEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEE-----EETTSEEEEE--ETTTCC----
T ss_pred CEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEE-----EeCCCcEEEE--eCCCCe----
Confidence 9999999 9999999986431 11122345566788888888877777 5566555543 222111
Q ss_pred eeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee--CCCEEEEEE
Q 005140 405 KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP--KGHRFAVIH 482 (712)
Q Consensus 405 ~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp--~g~~l~~~~ 482 (712)
....+.+|...|.+++|+| +|++|++++
T Consensus 188 --------------------------------------------------~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs 217 (354)
T 2pbi_B 188 --------------------------------------------------LLQSFHGHGADVLCLDLAPSETGNTFVSGG 217 (354)
T ss_dssp --------------------------------------------------EEEEEECCSSCEEEEEECCCSSCCEEEEEE
T ss_pred --------------------------------------------------EEEEEcCCCCCeEEEEEEeCCCCCEEEEEe
Confidence 0123447888999999988 578999999
Q ss_pred cCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeec----ccc
Q 005140 483 GDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATA----EHF 556 (712)
Q Consensus 483 ~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~----~~~ 556 (712)
.|+ .|++||++++. .+..+..| .|++++|+|+|.+|++++. |+.|++||+...+.+... +..
T Consensus 218 ~Dg---~v~~wd~~~~~------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~---D~~v~lwd~~~~~~~~~~~~~~~~~ 285 (354)
T 2pbi_B 218 CDK---KAMVWDMRSGQ------CVQAFETHESDVNSVRYYPSGDAFASGSD---DATCRLYDLRADREVAIYSKESIIF 285 (354)
T ss_dssp TTS---CEEEEETTTCC------EEEEECCCSSCEEEEEECTTSSEEEEEET---TSCEEEEETTTTEEEEEECCTTCCS
T ss_pred CCC---eEEEEECCCCc------EEEEecCCCCCeEEEEEeCCCCEEEEEeC---CCeEEEEECCCCcEEEEEcCCCccc
Confidence 999 99999997754 45555544 7999999999999999998 999999999977665432 224
Q ss_pred ceeeEEECCCCCEEEEEEccceeccccEEEEEec-Cceeeee--cccceeeeEEecCCCCCCChhhHHHHH
Q 005140 557 MATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 557 ~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
.+++++|+|+|++|++++. |+.|+||++. +..+... |...|.+++|+|++++|++++.|+.|+
T Consensus 286 ~~~~~~~s~~g~~l~~g~~-----d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~ 351 (354)
T 2pbi_B 286 GASSVDFSLSGRLLFAGYN-----DYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLR 351 (354)
T ss_dssp CEEEEEECTTSSEEEEEET-----TSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred ceeEEEEeCCCCEEEEEEC-----CCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEE
Confidence 6889999999999999999 9999999985 5555443 778999999999999999999887653
No 41
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1e-30 Score=298.01 Aligned_cols=280 Identities=14% Similarity=0.213 Sum_probs=219.5
Q ss_pred cccCCCcccceEEEcCCC-cEEEEEecCc-eEEeecccCc----ceeeee-cCC-CeeEEEecCCCCEEEEEcCCCCCCC
Q 005140 208 VYKRSYWTESFVQWSPLG-TYLATVHRQG-AAVWGGANTF----NRLMRY-AHP-QVKLIDFSPGEKYLVTYSSHEPSNP 279 (712)
Q Consensus 208 ~~~~~~~~v~~v~~Spdg-~~lat~~~~~-i~iw~~~~~~----~~~~~~-~~~-~v~~i~~Spdg~~l~t~s~d~~~~~ 279 (712)
.+.+|...|++++|+|++ .+|+|++.|+ |+||++.... .....+ .|. .|.+++|||+|++|++++.|
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D----- 451 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD----- 451 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT-----
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC-----
Confidence 468999999999999875 7999999999 8899987221 122222 344 49999999999999999999
Q ss_pred cCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecc---c
Q 005140 280 RDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLID---K 355 (712)
Q Consensus 280 ~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~---~ 355 (712)
++|+|||+.++..++.+.+|...+. +++|+| ++++|++++ |++|++|++....... .
T Consensus 452 -----g~v~vwd~~~~~~~~~~~~h~~~v~-------------~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~ 512 (694)
T 3dm0_A 452 -----GELRLWDLAAGVSTRRFVGHTKDVL-------------SVAFSL-DNRQIVSASRDRTIKLWNTLGECKYTISEG 512 (694)
T ss_dssp -----SEEEEEETTTTEEEEEEECCSSCEE-------------EEEECT-TSSCEEEEETTSCEEEECTTSCEEEEECSS
T ss_pred -----CcEEEEECCCCcceeEEeCCCCCEE-------------EEEEeC-CCCEEEEEeCCCEEEEEECCCCcceeeccC
Confidence 9999999999999999999988764 799999 999999999 9999999986443221 1
Q ss_pred ccccccCeeeEEECCCC--CeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccc
Q 005140 356 KSLKVENVMDFSWSPTD--PIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTK 433 (712)
Q Consensus 356 ~~~~~~~v~~~~~sp~~--~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~ 433 (712)
...|...|.+++|+|++ ..|++ ++.++.+++|.+
T Consensus 513 ~~~h~~~v~~~~~~~~~~~~~l~s-----~s~d~~v~vwd~--------------------------------------- 548 (694)
T 3dm0_A 513 GEGHRDWVSCVRFSPNTLQPTIVS-----ASWDKTVKVWNL--------------------------------------- 548 (694)
T ss_dssp TTSCSSCEEEEEECSCSSSCEEEE-----EETTSCEEEEET---------------------------------------
T ss_pred CCCCCCcEEEEEEeCCCCcceEEE-----EeCCCeEEEEEC---------------------------------------
Confidence 12455668888888876 45666 556666555432
Q ss_pred ccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-C
Q 005140 434 TKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-G 512 (712)
Q Consensus 434 ~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~ 512 (712)
.... ....+.+|.+.|.+++|+|+|++|++++.|+ .|++||+.++. .+..+. .
T Consensus 549 --------------~~~~---~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg---~i~iwd~~~~~------~~~~~~~~ 602 (694)
T 3dm0_A 549 --------------SNCK---LRSTLAGHTGYVSTVAVSPDGSLCASGGKDG---VVLLWDLAEGK------KLYSLEAN 602 (694)
T ss_dssp --------------TTCC---EEEEECCCSSCEEEEEECTTSSEEEEEETTS---BCEEEETTTTE------EEECCBCS
T ss_pred --------------CCCc---EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCC---eEEEEECCCCc------eEEEecCC
Confidence 1100 1123557899999999999999999999999 99999997654 455554 3
Q ss_pred CceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeecc---------------------ccceeeEEECCCCCEEE
Q 005140 513 KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE---------------------HFMATDVEWDPTGRYVA 571 (712)
Q Consensus 513 ~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~---------------------~~~v~~~~~spdg~~l~ 571 (712)
..+.+++|+|++.+|++++ ++.|++||+.++.++.... ...+++++|||+|++|+
T Consensus 603 ~~v~~~~~sp~~~~l~~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~ 678 (694)
T 3dm0_A 603 SVIHALCFSPNRYWLCAAT----EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLF 678 (694)
T ss_dssp SCEEEEEECSSSSEEEEEE----TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEE
T ss_pred CcEEEEEEcCCCcEEEEEc----CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEE
Confidence 3689999999999888776 6779999999877654321 11368899999999999
Q ss_pred EEEccceeccccEEEEEec
Q 005140 572 TAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 572 t~s~~~~~~d~~v~iw~~~ 590 (712)
+++. |+.|+||++.
T Consensus 679 sgs~-----Dg~i~iW~i~ 692 (694)
T 3dm0_A 679 SGYT-----DGVIRVWGIG 692 (694)
T ss_dssp EEET-----TSEEEEEEC-
T ss_pred EEcC-----CCeEEEEecc
Confidence 9999 9999999974
No 42
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.5e-31 Score=273.36 Aligned_cols=286 Identities=16% Similarity=0.255 Sum_probs=227.5
Q ss_pred ceeeeccCCCc-ccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccc---ccccccCeeeEEECC
Q 005140 296 KVMRDFKGSAD-EFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDK---KSLKVENVMDFSWSP 370 (712)
Q Consensus 296 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~---~~~~~~~v~~~~~sp 370 (712)
.++..+.+|.. .+ | .++|+| +|++||+++ |++|+||++.++..... ...|...|.+++|+|
T Consensus 6 ~~~~~~~~h~~~~v------------~-~l~~sp-~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp 71 (345)
T 3fm0_A 6 VLLGRVPAHPDSRC------------W-FLAWNP-AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP 71 (345)
T ss_dssp EEEEEECCSTTSCE------------E-EEEECT-TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT
T ss_pred EEeeeecCCCCCcE------------E-EEEECC-CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC
Confidence 35667777766 44 3 699999 999999999 99999999987654322 134677899999999
Q ss_pred CCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecC
Q 005140 371 TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKER 450 (712)
Q Consensus 371 ~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~ 450 (712)
++++|++ ++.|+.++||..+......+.....+......+.|+|+|++|++++.++. +.+|++...
T Consensus 72 ~g~~l~s-----~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~---------v~iwd~~~~ 137 (345)
T 3fm0_A 72 CGNYLAS-----ASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKS---------VWVWEVDEE 137 (345)
T ss_dssp TSSEEEE-----EETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC---------EEEEEECTT
T ss_pred CCCEEEE-----EECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCe---------EEEEECCCC
Confidence 9999999 88899988887765544444444455666778899999999999999887 899999865
Q ss_pred CcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEE
Q 005140 451 DIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIV 528 (712)
Q Consensus 451 ~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~ 528 (712)
........+.+|...|.+++|+|++++|++++.|+ .|++|++.++.. .....+.+| .|.+++|+|+|++|+
T Consensus 138 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~---~i~~w~~~~~~~----~~~~~~~~h~~~v~~l~~sp~g~~l~ 210 (345)
T 3fm0_A 138 DEYECVSVLNSHTQDVKHVVWHPSQELLASASYDD---TVKLYREEEDDW----VCCATLEGHESTVWSLAFDPSGQRLA 210 (345)
T ss_dssp SCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTS---CEEEEEEETTEE----EEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred CCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCC---cEEEEEecCCCE----EEEEEecCCCCceEEEEECCCCCEEE
Confidence 44444455778999999999999999999999999 999999976432 244556554 799999999999999
Q ss_pred EEeccCCCceEEEEECCcc---------------eeeee---ccccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 529 LAGLKGFNGQLEFYNVDEL---------------ETMAT---AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 529 ~~~~~~~dg~v~iwd~~~~---------------~~~~~---~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
+++. |+.|++|+.... +++.+ .|...|.+++|+|++..|++++. |+.+++|+..
T Consensus 211 s~s~---D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-----d~~i~vw~~~ 282 (345)
T 3fm0_A 211 SCSD---DRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACG-----DDAIRVFQED 282 (345)
T ss_dssp EEET---TSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEET-----TSCEEEEEEC
T ss_pred EEeC---CCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeC-----CCeEEEEEeC
Confidence 9998 999999996321 11221 36678999999999999999999 9999999986
Q ss_pred Cce---------ee---eecccceeeeEEecCCC-CCCChhhHHHHH
Q 005140 591 GKL---------LY---RTLKDHFFQFLWRPRPP-SFLTPEKEEEIA 624 (712)
Q Consensus 591 g~~---------~~---~~~~~~i~~~~w~p~~~-~l~s~~~d~~i~ 624 (712)
... .. ..|...|++++|+|++. .|+|++.|+.|+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~ 329 (345)
T 3fm0_A 283 PNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVA 329 (345)
T ss_dssp TTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred CCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEE
Confidence 421 11 23667899999999985 788999999886
No 43
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.98 E-value=2.3e-30 Score=271.61 Aligned_cols=296 Identities=15% Similarity=0.187 Sum_probs=224.4
Q ss_pred ccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcc--eeeeec-CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCC
Q 005140 209 YKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN--RLMRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDAN 283 (712)
Q Consensus 209 ~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~--~~~~~~-~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~ 283 (712)
++.|...|++++|+|+|++||+++.++ |+||+.. +.. .+..+. |. .|.+++|+|++++|++++.+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d--------- 73 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKS-GNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD--------- 73 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEE-TTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT---------
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCC---------
Confidence 456889999999999999999999888 8899998 554 555553 44 49999999999999999999
Q ss_pred ccEEEEEEccCCceeeec--cCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCcee---cc-cc
Q 005140 284 RVVINIFDVRTGKVMRDF--KGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTL---ID-KK 356 (712)
Q Consensus 284 ~~~I~iwd~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~---~~-~~ 356 (712)
+.|++||+.+++....+ ..|...+. +++|+| ++++|++++ ++.|++|++..+.. .. ..
T Consensus 74 -g~i~vwd~~~~~~~~~~~~~~~~~~v~-------------~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~ 138 (372)
T 1k8k_C 74 -RNAYVWTLKGRTWKPTLVILRINRAAR-------------CVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIK 138 (372)
T ss_dssp -SCEEEEEEETTEEEEEEECCCCSSCEE-------------EEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEEC
T ss_pred -CeEEEEECCCCeeeeeEEeecCCCcee-------------EEEECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeee
Confidence 99999999888754443 44544442 799999 999999998 99999999987652 11 12
Q ss_pred cccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccc
Q 005140 357 SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKK 436 (712)
Q Consensus 357 ~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~ 436 (712)
..|...|.+++|+|++++|++ ++.++.+++|.............. .|...-
T Consensus 139 ~~~~~~i~~~~~~~~~~~l~~-----~~~dg~i~~~d~~~~~~~~~~~~~---------~~~~~~--------------- 189 (372)
T 1k8k_C 139 KPIRSTVLSLDWHPNSVLLAA-----GSCDFKCRIFSAYIKEVEERPAPT---------PWGSKM--------------- 189 (372)
T ss_dssp TTCCSCEEEEEECTTSSEEEE-----EETTSCEEEEECCCTTTSCCCCCB---------TTBSCC---------------
T ss_pred cccCCCeeEEEEcCCCCEEEE-----EcCCCCEEEEEccccccccccccc---------cccccc---------------
Confidence 335667999999999999998 667777776654332211000000 010000
Q ss_pred cccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC--Cc
Q 005140 437 STYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG--KQ 514 (712)
Q Consensus 437 ~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~ 514 (712)
........+.+|...|.+++|+|++++|++++.|+ .|++||++++. .+..+.. .+
T Consensus 190 --------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~------~~~~~~~~~~~ 246 (372)
T 1k8k_C 190 --------------PFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS---TVCLADADKKM------AVATLASETLP 246 (372)
T ss_dssp --------------CTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTT---EEEEEEGGGTT------EEEEEECSSCC
T ss_pred --------------chhhheEecCCCCCeEEEEEECCCCCEEEEEeCCC---EEEEEECCCCc------eeEEEccCCCC
Confidence 00001133447889999999999999999999999 99999997655 4444443 37
Q ss_pred eeEEEEccCCCeEEEEeccCCCceEEEEECCc--ce-----------------------------------------eee
Q 005140 515 ANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE--LE-----------------------------------------TMA 551 (712)
Q Consensus 515 v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~--~~-----------------------------------------~~~ 551 (712)
+.+++|+|+|++|+++ . ++.|++|++.+ ++ .+.
T Consensus 247 v~~~~~~~~~~~l~~~-~---d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (372)
T 1k8k_C 247 LLAVTFITESSLVAAG-H---DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLD 322 (372)
T ss_dssp EEEEEEEETTEEEEEE-T---TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCS
T ss_pred eEEEEEecCCCEEEEE-e---CCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccccc
Confidence 8999999999988887 5 99999999987 31 222
Q ss_pred eccccceeeEEEC-CCC---CEEEEEEccceeccccEEEEEec
Q 005140 552 TAEHFMATDVEWD-PTG---RYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 552 ~~~~~~v~~~~~s-pdg---~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
..|...|++++|+ ++| .+|++++. |+.|++|++.
T Consensus 323 ~~h~~~v~~~~~~~~~g~~~~~l~s~~~-----Dg~i~~W~~~ 360 (372)
T 1k8k_C 323 SLHKNSVSQISVLSGGKAKCSQFCTTGM-----DGGMSIWDVR 360 (372)
T ss_dssp SSSSSCEEEEEEEESTTTSCSEEEEEET-----TSEEEEEEHH
T ss_pred ccccCCcceeEEecCCCcceeeEEEecC-----CCceEEEEec
Confidence 4677899999966 677 99999999 9999999986
No 44
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.98 E-value=5.2e-31 Score=277.41 Aligned_cols=290 Identities=11% Similarity=0.195 Sum_probs=223.3
Q ss_pred EeecccCcceeeee-cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCC
Q 005140 238 VWGGANTFNRLMRY-AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGG 315 (712)
Q Consensus 238 iw~~~~~~~~~~~~-~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~ 315 (712)
.|+.. .......+ .|. .|.+++|+|+|++|++++.| ++|+|||+.+++.+..+..|...+.
T Consensus 50 ~~~~~-~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D----------~~v~iWd~~~~~~~~~~~~h~~~v~------ 112 (380)
T 3iz6_a 50 SFNPT-DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQD----------GRLIVWNALTSQKTHAIKLHCPWVM------ 112 (380)
T ss_dssp CCCCC-CCEEEEEECCCSSCEEEEEECTTSSCEEEEETT----------SEEEEEETTTTEEEEEEECCCTTCC------
T ss_pred ccccc-eeEEeecccccccEEEEEEEcCCCCEEEEEeCC----------CeEEEEECCCCccceEEecCCCCEE------
Confidence 45555 44444444 344 59999999999999999999 9999999999999999998877653
Q ss_pred cCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCce-------ecccccccccCeeeEEECCCC-CeEEEEeecCCCCC
Q 005140 316 VAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT-------LIDKKSLKVENVMDFSWSPTD-PIISLFVPELGGGN 386 (712)
Q Consensus 316 ~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~sp~~-~~la~~~~~~~~~~ 386 (712)
+++|+| ++++|++++ |+.+++|++.+.. .......|...|.++.|+|++ ..|++ ++.|
T Consensus 113 -------~~~~s~-~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s-----~s~D 179 (380)
T 3iz6_a 113 -------ECAFAP-NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLIT-----GSGD 179 (380)
T ss_dssp -------CCEECT-TSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEE-----ECTT
T ss_pred -------EEEECC-CCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEE-----ECCC
Confidence 689999 999999999 9999999987432 122234566678889999974 45777 7777
Q ss_pred CCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCce
Q 005140 387 QPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKI 466 (712)
Q Consensus 387 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v 466 (712)
+.+++| ++.+.+.+ ..... ....+|...|
T Consensus 180 ~~i~~w--d~~~~~~~----------------------~~~~~---------------------------~~~~~h~~~v 208 (380)
T 3iz6_a 180 QTCVLW--DVTTGQRI----------------------SIFGS---------------------------EFPSGHTADV 208 (380)
T ss_dssp SCEEEE--CTTTCCEE----------------------EEECC---------------------------CSSSSCCSCE
T ss_pred CcEEEE--EcCCCcEE----------------------EEeec---------------------------ccCCCCccCe
Confidence 776654 33222111 00000 0013678899
Q ss_pred EEEEEee-CCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEE
Q 005140 467 IAFAWEP-KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYN 543 (712)
Q Consensus 467 ~~~~~sp-~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd 543 (712)
.+++|+| ++++|++++.|+ .|++||++.... .+..+.+| .|++++|+|+|++|++++. ||.|++||
T Consensus 209 ~~~~~~~~~~~~l~sgs~D~---~v~~wd~~~~~~-----~~~~~~~h~~~v~~v~~~p~~~~l~s~s~---D~~i~lwd 277 (380)
T 3iz6_a 209 LSLSINSLNANMFISGSCDT---TVRLWDLRITSR-----AVRTYHGHEGDINSVKFFPDGQRFGTGSD---DGTCRLFD 277 (380)
T ss_dssp EEEEECSSSCCEEEEEETTS---CEEEEETTTTCC-----CCEEECCCSSCCCEEEECTTSSEEEEECS---SSCEEEEE
T ss_pred EEEEeecCCCCEEEEEECCC---eEEEEECCCCCc-----ceEEECCcCCCeEEEEEecCCCeEEEEcC---CCeEEEEE
Confidence 9999987 889999999999 999999964322 34445444 7999999999999999998 99999999
Q ss_pred CCcceeeeecc---------ccceeeEEECCCCCEEEEEEccceeccccEEEEEec-Cceeee------ecccceeeeEE
Q 005140 544 VDELETMATAE---------HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYR------TLKDHFFQFLW 607 (712)
Q Consensus 544 ~~~~~~~~~~~---------~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~------~~~~~i~~~~w 607 (712)
+.+++.+.... ...+++++|+|+|++|++++. |+.++|||.. +..+.. .|.+.|.+++|
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-----dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~ 352 (380)
T 3iz6_a 278 MRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS-----NGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGL 352 (380)
T ss_dssp TTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT-----TSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEE
T ss_pred CCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEEC-----CCCEEEEECCCCceEEEEecccCCCCCceEEEEE
Confidence 99887765421 134889999999999999999 9999999975 444332 36678999999
Q ss_pred ecCCCCCCChhhHHHHH
Q 005140 608 RPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 608 ~p~~~~l~s~~~d~~i~ 624 (712)
+|++.+|+|++.|+.|+
T Consensus 353 s~dg~~l~sgs~D~~i~ 369 (380)
T 3iz6_a 353 SSDGSALCTGSWDKNLK 369 (380)
T ss_dssp CSSSSEEEEECTTSCEE
T ss_pred CCCCCEEEEeeCCCCEE
Confidence 99999999999998775
No 45
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=99.98 E-value=2.2e-30 Score=267.77 Aligned_cols=290 Identities=14% Similarity=0.225 Sum_probs=204.2
Q ss_pred CCCCCCCCCCCCCccchhhccCCCCCceEEEEECCeeEEEecCC------CCCCCc----ccccCCCcccceEEEcCCCc
Q 005140 157 EWAPPEHKPYTPGENLQKWLTDEKARDQFVIRSGTDTEVLWNDA------RHLKPE----PVYKRSYWTESFVQWSPLGT 226 (712)
Q Consensus 157 ~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~------~~~~~~----~~~~~~~~~v~~v~~Spdg~ 226 (712)
.|..|+..+......+.+..++|+|+ +++..++.++.+|+.. ....+. .....|...|++++|+|++
T Consensus 18 ~w~~~~~~~~~~~~~v~~~~fs~dG~--~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~- 94 (344)
T 4gqb_B 18 EWNLPPNAPACMERQLEAARYRSDGA--LLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER- 94 (344)
T ss_dssp -----CCSCSSCCSEEEEEEECTTSC--EEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-
T ss_pred ccCCCCCCcccccCCEEEEEECCCCC--EEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-
Confidence 34444444444445677788889886 4555556666677621 011111 1122355679999999996
Q ss_pred EEEEEecCc-eEEeecccCcceeee-----ecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceee
Q 005140 227 YLATVHRQG-AAVWGGANTFNRLMR-----YAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMR 299 (712)
Q Consensus 227 ~lat~~~~~-i~iw~~~~~~~~~~~-----~~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~ 299 (712)
+|++++.+| |+|||+. +.+.+.. ..|.+ |.+++|||+|++|++++.| ++|++||+.+++.++
T Consensus 95 ~l~~~s~dg~v~lWd~~-~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d----------~~i~iwd~~~~~~~~ 163 (344)
T 4gqb_B 95 GILVASDSGAVELWELD-ENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD----------ICIKVWDLAQQVVLS 163 (344)
T ss_dssp EEEEEETTSEEEEEEEC-TTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT----------SCEEEEETTTTEEEE
T ss_pred eEEEEECCCEEEEEecc-CCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC----------CeEEEEECCCCcEEE
Confidence 577888888 8899998 5543322 13554 9999999999999999999 999999999999999
Q ss_pred eccCCCcccccCCCCCcCCCCcCeEEecCCCCC-EEEEec-CCeEEEEEcCCceecccccc--cccCeeeEEECCCC-Ce
Q 005140 300 DFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK-YFAKLG-KNMISVYETESFTLIDKKSL--KVENVMDFSWSPTD-PI 374 (712)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~-~la~~~-d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~sp~~-~~ 374 (712)
.+.+|...+. +++|++ ++. +|++++ |++|++||+.+++.+..... +...+.+++|+|++ ++
T Consensus 164 ~~~~h~~~V~-------------~~~~~~-~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 229 (344)
T 4gqb_B 164 SYRAHAAQVT-------------CVAASP-HKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEV 229 (344)
T ss_dssp EECCCSSCEE-------------EEEECS-SCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTE
T ss_pred EEcCcCCceE-------------EEEecC-CCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcc
Confidence 9999988764 799999 885 778888 99999999998876554322 23347788888854 45
Q ss_pred EEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcce
Q 005140 375 ISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPI 454 (712)
Q Consensus 375 la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 454 (712)
|++ ++.++.++|| ++.+.+
T Consensus 230 l~s-----g~~dg~v~~w--d~~~~~------------------------------------------------------ 248 (344)
T 4gqb_B 230 FVF-----GDENGTVSLV--DTKSTS------------------------------------------------------ 248 (344)
T ss_dssp EEE-----EETTSEEEEE--ESCC--------------------------------------------------------
T ss_pred eEE-----eccCCcEEEE--ECCCCc------------------------------------------------------
Confidence 555 4455544443 221111
Q ss_pred eEEEecCCCCceEEEEEeeCC-CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCe-EEEE
Q 005140 455 EVLELDNKNDKIIAFAWEPKG-HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRF-IVLA 530 (712)
Q Consensus 455 ~~~~l~~h~~~v~~~~~sp~g-~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~-l~~~ 530 (712)
....+.+|...|++++|+|+| ++|++++.|+ +|+|||+.++. . ..+.+| .|++++|||+|+. |+++
T Consensus 249 ~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~---~i~vwd~~~~~------~-~~~~~H~~~V~~v~~sp~~~~llas~ 318 (344)
T 4gqb_B 249 CVLSSAVHSQCVTGLVFSPHSVPFLASLSEDC---SLAVLDSSLSE------L-FRSQAHRDFVRDATWSPLNHSLLTTV 318 (344)
T ss_dssp CCEEEECCSSCEEEEEECSSSSCCEEEEETTS---CEEEECTTCCE------E-EEECCCSSCEEEEEECSSSTTEEEEE
T ss_pred EEEEEcCCCCCEEEEEEccCCCeEEEEEeCCC---eEEEEECCCCc------E-EEEcCCCCCEEEEEEeCCCCeEEEEE
Confidence 013355789999999999998 5788999999 99999986543 2 234444 7999999999975 5678
Q ss_pred eccCCCceEEEEECCcce
Q 005140 531 GLKGFNGQLEFYNVDELE 548 (712)
Q Consensus 531 ~~~~~dg~v~iwd~~~~~ 548 (712)
+. |++|++|++.+..
T Consensus 319 s~---D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 319 GW---DHQVVHHVVPTEP 333 (344)
T ss_dssp ET---TSCEEEEECCC--
T ss_pred cC---CCeEEEEECCCCC
Confidence 87 9999999998543
No 46
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.98 E-value=3.4e-30 Score=264.24 Aligned_cols=268 Identities=17% Similarity=0.280 Sum_probs=218.0
Q ss_pred CC-CeeEEEecCCC-CEEEEEcCCCCCCCcCCCccEEEEEEccC-----CceeeeccCCCcccccCCCCCcCCCCcCeEE
Q 005140 253 HP-QVKLIDFSPGE-KYLVTYSSHEPSNPRDANRVVINIFDVRT-----GKVMRDFKGSADEFAVGGTGGVAGVSWPVFR 325 (712)
Q Consensus 253 ~~-~v~~i~~Spdg-~~l~t~s~d~~~~~~~~~~~~I~iwd~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (712)
|. .|.+++|+|++ ++|++++.| ++|++|++.+ +..++.+.+|...+. +++
T Consensus 16 H~~~V~~l~~~~~~~~~l~s~s~D----------~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~-------------~~~ 72 (319)
T 3frx_A 16 HNGWVTSLATSAGQPNLLLSASRD----------KTLISWKLTGDDQKFGVPVRSFKGHSHIVQ-------------DCT 72 (319)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETT----------SEEEEEEEEEETTEEEEEEEEEECCSSCEE-------------EEE
T ss_pred ccceEEEEEccCCCccEEEEecCC----------ccEEEecCCCCCccccccceEEeCCcccEE-------------EEE
Confidence 44 49999999975 899999999 9999999854 345778888887764 789
Q ss_pred ecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceee
Q 005140 326 WGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ 404 (712)
Q Consensus 326 ~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (712)
|+| ++++|++++ |++|++||+.+++.+.....|...|.+++|+|++.+|++ ++.|+.+++|.+.
T Consensus 73 ~s~-dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-----~s~D~~i~vwd~~--------- 137 (319)
T 3frx_A 73 LTA-DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIIS-----GSRDKTIKVWTIK--------- 137 (319)
T ss_dssp ECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEE-----EETTSCEEEEETT---------
T ss_pred ECC-CCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEE-----EeCCCeEEEEECC---------
Confidence 999 999999999 999999999999888777778888999999999999988 7778777765321
Q ss_pred eeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeC------CCEE
Q 005140 405 KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK------GHRF 478 (712)
Q Consensus 405 ~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~------g~~l 478 (712)
+.. ...+.+|...|.+++|+|. +..|
T Consensus 138 ----------------~~~--------------------------------~~~~~~h~~~v~~~~~~~~~~~~~~~~~l 169 (319)
T 3frx_A 138 ----------------GQC--------------------------------LATLLGHNDWVSQVRVVPNEKADDDSVTI 169 (319)
T ss_dssp ----------------SCE--------------------------------EEEECCCSSCEEEEEECCC------CCEE
T ss_pred ----------------CCe--------------------------------EEEEeccCCcEEEEEEccCCCCCCCccEE
Confidence 111 1223467888999999885 4589
Q ss_pred EEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee-ccc
Q 005140 479 AVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-AEH 555 (712)
Q Consensus 479 ~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~-~~~ 555 (712)
++++.|+ .|++||+.+.. ....+.+| .+++++|+|+|++|++++. ||.|++||+.+++.+.. .++
T Consensus 170 ~s~~~d~---~i~~wd~~~~~------~~~~~~~h~~~v~~~~~sp~g~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~ 237 (319)
T 3frx_A 170 ISAGNDK---MVKAWNLNQFQ------IEADFIGHNSNINTLTASPDGTLIASAGK---DGEIMLWNLAAKKAMYTLSAQ 237 (319)
T ss_dssp EEEETTS---CEEEEETTTTE------EEEEECCCCSCEEEEEECTTSSEEEEEET---TCEEEEEETTTTEEEEEEECC
T ss_pred EEEeCCC---EEEEEECCcch------hheeecCCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCcEEEEecCC
Confidence 9999999 99999997543 44455444 7999999999999999998 99999999998887765 345
Q ss_pred cceeeEEECCCCCEEEEEEccceeccccEEEEEecCceeee-e----------cccceeeeEEecCCCCCCChhhHHHHH
Q 005140 556 FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYR-T----------LKDHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 556 ~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~-~----------~~~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
..+.+++|+|+|.+|++++. +.+++|++....+.. . +...+.+++|+|++++|++++.|+.|+
T Consensus 238 ~~v~~~~~sp~~~~la~~~~------~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~ 311 (319)
T 3frx_A 238 DEVFSLAFSPNRYWLAAATA------TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIR 311 (319)
T ss_dssp SCEEEEEECSSSSEEEEEET------TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CcEEEEEEcCCCCEEEEEcC------CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEE
Confidence 78999999999999998876 569999998543321 1 235688999999999999999987664
No 47
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.98 E-value=4.6e-30 Score=272.06 Aligned_cols=279 Identities=14% Similarity=0.232 Sum_probs=217.1
Q ss_pred ccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcc------eeeee-cCC-CeeEEEecCC----C---CEEEE
Q 005140 207 PVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN------RLMRY-AHP-QVKLIDFSPG----E---KYLVT 270 (712)
Q Consensus 207 ~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~------~~~~~-~~~-~v~~i~~Spd----g---~~l~t 270 (712)
..+.+|...|++++|+| ++||+++.++ |+||+.. +.. .+..+ .|. .|.+++|+|+ | ++|++
T Consensus 10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s 86 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNK-LLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT 86 (397)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESB-CCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECC-CcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEE
Confidence 35679999999999999 7999999999 8899998 554 34444 344 4999999999 9 99999
Q ss_pred EcCCCCCCCcCCCccEEEEEEccCCce-----eeeccCCC-----cccccCCCCCcCCCCcCeEEec----CCCCCE-EE
Q 005140 271 YSSHEPSNPRDANRVVINIFDVRTGKV-----MRDFKGSA-----DEFAVGGTGGVAGVSWPVFRWG----GGKDKY-FA 335 (712)
Q Consensus 271 ~s~d~~~~~~~~~~~~I~iwd~~~g~~-----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~s----~~dg~~-la 335 (712)
++.+ +.|++||+.+++. +..+..|. ..+. +++|+ | ++++ |+
T Consensus 87 ~~~d----------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-------------~~~~~~~~~~-~~~~~l~ 142 (397)
T 1sq9_A 87 TSFS----------GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW-------------ALKWGASNDR-LLSHRLV 142 (397)
T ss_dssp EETT----------SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEE-------------EEEEECCC-----CEEEE
T ss_pred EcCC----------CCEEEEEccCCcccccccceeecccccccCCCcEE-------------EEEEeeccCC-CCceEEE
Confidence 9999 9999999998887 78888773 4442 79999 9 9999 99
Q ss_pred Eec-CCeEEEEEcCC------ceecc-----cc-------cccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEec
Q 005140 336 KLG-KNMISVYETES------FTLID-----KK-------SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQI 396 (712)
Q Consensus 336 ~~~-d~~i~iwd~~~------~~~~~-----~~-------~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~ 396 (712)
+++ ++.|++|++.+ +..+. .. ..+...|.+++|+|++ +|++ ++.++.++ +|++
T Consensus 143 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~-----~~~dg~i~--i~d~ 214 (397)
T 1sq9_A 143 ATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIAT-----GFNNGTVQ--ISEL 214 (397)
T ss_dssp EEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEE-----ECTTSEEE--EEET
T ss_pred EEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEE-----EeCCCcEE--EEEC
Confidence 988 99999999987 55543 32 1245567888888888 7766 44444433 3443
Q ss_pred CCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecC---C---CCceEEEE
Q 005140 397 PSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDN---K---NDKIIAFA 470 (712)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~---h---~~~v~~~~ 470 (712)
.+.+. ...+.. | ...|.+++
T Consensus 215 ~~~~~------------------------------------------------------~~~~~~~~~h~~~~~~i~~i~ 240 (397)
T 1sq9_A 215 STLRP------------------------------------------------------LYNFESQHSMINNSNSIRSVK 240 (397)
T ss_dssp TTTEE------------------------------------------------------EEEEECCC---CCCCCEEEEE
T ss_pred CCCce------------------------------------------------------eEEEeccccccccCCccceEE
Confidence 22110 012223 6 88999999
Q ss_pred EeeCCCEEEEEEcC---CCCCeEEEEEeecccccCceeEEEEeC---------------CCceeEEEEccCCCeEEEEec
Q 005140 471 WEPKGHRFAVIHGD---SPRPDISFYSMRTAQHAGRVSKLTTLK---------------GKQANALFWSPSGRFIVLAGL 532 (712)
Q Consensus 471 ~sp~g~~l~~~~~d---~~~~~v~i~d~~~~~~~~~~~~~~~~~---------------~~~v~~l~~spdg~~l~~~~~ 532 (712)
|+|++++|++++.+ + .|++||+.++. .+..+. ...+.+++|+|+|++|++++.
T Consensus 241 ~~~~~~~l~~~~~d~~~g---~i~i~d~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 311 (397)
T 1sq9_A 241 FSPQGSLLAIAHDSNSFG---CITLYETEFGE------RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW 311 (397)
T ss_dssp ECSSTTEEEEEEEETTEE---EEEEEETTTCC------EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET
T ss_pred ECCCCCEEEEEecCCCCc---eEEEEECCCCc------ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC
Confidence 99999999999998 7 99999997654 444443 347899999999999999998
Q ss_pred cCCCceEEEEECCcceeeeec--------c---------------ccceeeEEECCCC----------CEEEEEEcccee
Q 005140 533 KGFNGQLEFYNVDELETMATA--------E---------------HFMATDVEWDPTG----------RYVATAVTSVHE 579 (712)
Q Consensus 533 ~~~dg~v~iwd~~~~~~~~~~--------~---------------~~~v~~~~~spdg----------~~l~t~s~~~~~ 579 (712)
||.|++||+.+++.+... | ...|++++|+|+| ++|++++.
T Consensus 312 ---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~---- 384 (397)
T 1sq9_A 312 ---DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCL---- 384 (397)
T ss_dssp ---TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEET----
T ss_pred ---CCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecC----
Confidence 999999999988776643 3 6889999999999 79999999
Q ss_pred ccccEEEEEecC
Q 005140 580 MENGFNIWSFNG 591 (712)
Q Consensus 580 ~d~~v~iw~~~g 591 (712)
|+.|+||++.+
T Consensus 385 -dg~i~iw~~~~ 395 (397)
T 1sq9_A 385 -DRSIRWFREAG 395 (397)
T ss_dssp -TTEEEEEEEEC
T ss_pred -CCcEEEEEcCC
Confidence 99999999874
No 48
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=3.7e-30 Score=268.92 Aligned_cols=299 Identities=12% Similarity=0.112 Sum_probs=200.4
Q ss_pred cccceEEEcCCCcEEEEEecC--------ceEEeecccCcce-------e--eeec-CC-CeeEEEecCCCCEEEEEcCC
Q 005140 214 WTESFVQWSPLGTYLATVHRQ--------GAAVWGGANTFNR-------L--MRYA-HP-QVKLIDFSPGEKYLVTYSSH 274 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~~--------~i~iw~~~~~~~~-------~--~~~~-~~-~v~~i~~Spdg~~l~t~s~d 274 (712)
.+|+|++|||||++||+|+.+ .|+||++...... . ..+. |. .|.++++ +++.++++..+
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~--~~~~~~~g~~~ 92 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA--SKGIILVGCNE 92 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE--ETTEEEEECCC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe--CCCEEEEEECC
Confidence 589999999999999999753 2789988622211 1 1121 22 3666654 56677776543
Q ss_pred CCCC-CcCCCccEEEEEEccCCce-eeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec---CCeEEEEEcCC
Q 005140 275 EPSN-PRDANRVVINIFDVRTGKV-MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG---KNMISVYETES 349 (712)
Q Consensus 275 ~~~~-~~~~~~~~I~iwd~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~---d~~i~iwd~~~ 349 (712)
.... .....++++++|++.++.. +.................+ .+++||| ||+++++++ |++|+|||+.+
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~ 166 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYT-----KLVYISR-EGTVAAIASSKVPAIMRIIDPSD 166 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCE-----EEEEECT-TSSCEEEEESCSSCEEEEEETTT
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCE-----EEEEEcC-CCCEEEEEECCCCCEEEEeECCC
Confidence 1100 0011226799999866542 1111100000000000001 1589999 999986543 89999999999
Q ss_pred ceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEc
Q 005140 350 FTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVD 429 (712)
Q Consensus 350 ~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~ 429 (712)
+..+... .+...|.+++|+|+|++|++ ++.+. .. +| |..++..+..
T Consensus 167 ~~~~~~~-~~~~~V~~v~fspdg~~l~s-----~s~~~-~~--~~----------------------~~~~~~~~~~--- 212 (365)
T 4h5i_A 167 LTEKFEI-ETRGEVKDLHFSTDGKVVAY-----ITGSS-LE--VI----------------------STVTGSCIAR--- 212 (365)
T ss_dssp TEEEEEE-ECSSCCCEEEECTTSSEEEE-----ECSSC-EE--EE----------------------ETTTCCEEEE---
T ss_pred CcEEEEe-CCCCceEEEEEccCCceEEe-----cccee-EE--EE----------------------EeccCcceee---
Confidence 8877554 35566999999999999998 44332 22 22 2222222111
Q ss_pred ccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCC-CeEEEEEeecccccCceeEEE
Q 005140 430 RYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPR-PDISFYSMRTAQHAGRVSKLT 508 (712)
Q Consensus 430 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~-~~v~i~d~~~~~~~~~~~~~~ 508 (712)
....+|...|.+++|+|+|+++++++.++.. ..+++|++..... ......
T Consensus 213 ---------------------------~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~--~~~~~~ 263 (365)
T 4h5i_A 213 ---------------------------KTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNT--SVLRSK 263 (365)
T ss_dssp ---------------------------ECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEE--EEEEEE
T ss_pred ---------------------------eecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccccee--cceeee
Confidence 1123567889999999999999999887532 2467788765432 122233
Q ss_pred EeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee---ccccceeeEEECCCCCEEEEEEccceecccc
Q 005140 509 TLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT---AEHFMATDVEWDPTGRYVATAVTSVHEMENG 583 (712)
Q Consensus 509 ~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~---~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~ 583 (712)
.+.++ .|++++|||||++||+|+. |+.|+|||+.+++++.+ +|...|++++|||||++||+++. |++
T Consensus 264 ~~~~~~~~V~~~~~Spdg~~lasgs~---D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~-----D~t 335 (365)
T 4h5i_A 264 QVTNRFKGITSMDVDMKGELAVLASN---DNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSA-----ANT 335 (365)
T ss_dssp EEESSCSCEEEEEECTTSCEEEEEET---TSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEET-----TSE
T ss_pred eecCCCCCeEeEEECCCCCceEEEcC---CCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeC-----CCe
Confidence 44433 6999999999999999998 99999999999988764 57799999999999999999999 999
Q ss_pred EEEEEecC
Q 005140 584 FNIWSFNG 591 (712)
Q Consensus 584 v~iw~~~g 591 (712)
|+||++..
T Consensus 336 vrvw~ip~ 343 (365)
T 4h5i_A 336 IHIIKLPL 343 (365)
T ss_dssp EEEEECCT
T ss_pred EEEEEcCC
Confidence 99999853
No 49
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=6.1e-30 Score=269.84 Aligned_cols=290 Identities=12% Similarity=0.154 Sum_probs=212.3
Q ss_pred CCCcccccCCCcccceEEEcCCC-cEEEEEecCc-eEEeecccCcceeeee---cCC-CeeEEEecC-CCCEEEEEcCCC
Q 005140 203 LKPEPVYKRSYWTESFVQWSPLG-TYLATVHRQG-AAVWGGANTFNRLMRY---AHP-QVKLIDFSP-GEKYLVTYSSHE 275 (712)
Q Consensus 203 ~~~~~~~~~~~~~v~~v~~Spdg-~~lat~~~~~-i~iw~~~~~~~~~~~~---~~~-~v~~i~~Sp-dg~~l~t~s~d~ 275 (712)
......+.+|...|++++|+|+| ++||+++.++ |+||+.. +......+ .|. .|.+++|+| ++++|++++.+
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d- 140 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYD-VQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR- 140 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETT-STTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT-
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCC-CcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC-
Confidence 33445678899999999999999 9999999998 8899998 56555444 244 499999999 78999999999
Q ss_pred CCCCcCCCccEEEEEEccCCceeeeccCCC---cccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCce
Q 005140 276 PSNPRDANRVVINIFDVRTGKVMRDFKGSA---DEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT 351 (712)
Q Consensus 276 ~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~ 351 (712)
+.|++||+.+ ..+..+..+. ..+. +++|+| ++++|++++ |+.|++||+. ++
T Consensus 141 ---------~~i~iwd~~~-~~~~~~~~~~~~~~~v~-------------~~~~~~-~~~~l~~~~~d~~i~i~d~~-~~ 195 (383)
T 3ei3_B 141 ---------GATTLRDFSG-SVIQVFAKTDSWDYWYC-------------CVDVSV-SRQMLATGDSTGRLLLLGLD-GH 195 (383)
T ss_dssp ---------TEEEEEETTS-CEEEEEECCCCSSCCEE-------------EEEEET-TTTEEEEEETTSEEEEEETT-SC
T ss_pred ---------CEEEEEECCC-CceEEEeccCCCCCCeE-------------EEEECC-CCCEEEEECCCCCEEEEECC-CC
Confidence 9999999874 6666665543 2221 799999 999999999 9999999994 55
Q ss_pred ecccccccccCeeeEEECCCCC-eEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcc
Q 005140 352 LIDKKSLKVENVMDFSWSPTDP-IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDR 430 (712)
Q Consensus 352 ~~~~~~~~~~~v~~~~~sp~~~-~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~ 430 (712)
.+.....|...|.+++|+|+++ +|++ ++.++.+++| ++.+.+ ..+..
T Consensus 196 ~~~~~~~h~~~v~~~~~~~~~~~~l~s-----~~~d~~i~iw--d~~~~~------------------~~~~~------- 243 (383)
T 3ei3_B 196 EIFKEKLHKAKVTHAEFNPRCDWLMAT-----SSVDATVKLW--DLRNIK------------------DKNSY------- 243 (383)
T ss_dssp EEEEEECSSSCEEEEEECSSCTTEEEE-----EETTSEEEEE--EGGGCC------------------STTCE-------
T ss_pred EEEEeccCCCcEEEEEECCCCCCEEEE-----EeCCCEEEEE--eCCCCC------------------cccce-------
Confidence 5555556777899999999988 6776 5556555544 332110 00000
Q ss_pred cccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee-CCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEE
Q 005140 431 YTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTT 509 (712)
Q Consensus 431 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~ 509 (712)
...+ +|...|.+++|+| ++++|++++.|+ .|++||++++.....+.....
T Consensus 244 -------------------------~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~ 294 (383)
T 3ei3_B 244 -------------------------IAEM-PHEKPVNAAYFNPTDSTKLLTTDQRN---EIRVYSSYDWSKPDQIIIHPH 294 (383)
T ss_dssp -------------------------EEEE-ECSSCEEEEEECTTTSCEEEEEESSS---EEEEEETTBTTSCSEEEECCB
T ss_pred -------------------------EEEe-cCCCceEEEEEcCCCCCEEEEEcCCC---cEEEEECCCCccccccccccc
Confidence 0112 5688999999999 999999999999 999999987553211110000
Q ss_pred -e------------CCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeec----cccceeeEEECCCCCEEEE
Q 005140 510 -L------------KGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATA----EHFMATDVEWDPTGRYVAT 572 (712)
Q Consensus 510 -~------------~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~----~~~~v~~~~~spdg~~l~t 572 (712)
. +...+..++|+|+|++ +++. ||.|++||+.+++.+... +...+..++|+|+|++|++
T Consensus 295 ~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~---d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s 369 (383)
T 3ei3_B 295 RQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLND---KRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLAS 369 (383)
T ss_dssp CCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTC---CCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEE
T ss_pred cccccccceEEeccCCCCceEEEecCCccc--ccCC---CCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEE
Confidence 0 0112333556666665 4445 999999999988887653 3456667799999999999
Q ss_pred EEccceeccccEEEEEecC
Q 005140 573 AVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 573 ~s~~~~~~d~~v~iw~~~g 591 (712)
+ . |+.|+||++.+
T Consensus 370 ~-s-----d~~i~iw~~~~ 382 (383)
T 3ei3_B 370 G-M-----GFNILIWNRED 382 (383)
T ss_dssp E-E-----TTEEEEEECC-
T ss_pred e-c-----CCcEEEEecCC
Confidence 9 4 69999999864
No 50
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=2.2e-30 Score=270.89 Aligned_cols=312 Identities=11% Similarity=0.135 Sum_probs=232.7
Q ss_pred ccCCCcccceEEEcCC---Cc--EEEEEecCceEEeecccCcceeeeec------C-CCeeEEEecCC----CCEEEEEc
Q 005140 209 YKRSYWTESFVQWSPL---GT--YLATVHRQGAAVWGGANTFNRLMRYA------H-PQVKLIDFSPG----EKYLVTYS 272 (712)
Q Consensus 209 ~~~~~~~v~~v~~Spd---g~--~lat~~~~~i~iw~~~~~~~~~~~~~------~-~~v~~i~~Spd----g~~l~t~s 272 (712)
..+|...|++++|+|+ |. ++++++.+.|.||+.. +...+..+. | ..|.+++|+|+ |++|++++
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECH-SQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEEC-GGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcC-CCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 3589999999999984 33 5555555559999998 555544442 2 34999999999 67999999
Q ss_pred CCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCce
Q 005140 273 SHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT 351 (712)
Q Consensus 273 ~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~ 351 (712)
.+ +.|++||+.+++.+..+.+|...+. +++|+|.++.+|++++ |+.|++||+.+++
T Consensus 93 ~d----------g~i~v~d~~~~~~~~~~~~~~~~i~-------------~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 149 (366)
T 3k26_A 93 SR----------GIIRIINPITMQCIKHYVGHGNAIN-------------ELKFHPRDPNLLLSVSKDHALRLWNIQTDT 149 (366)
T ss_dssp TT----------CEEEEECTTTCCEEEEEESCCSCEE-------------EEEECSSCTTEEEEEETTSCEEEEETTTTE
T ss_pred CC----------CEEEEEEchhceEeeeecCCCCcEE-------------EEEECCCCCCEEEEEeCCCeEEEEEeecCe
Confidence 99 9999999999999999998877764 7999984567888888 9999999999888
Q ss_pred ecccc---cccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEE
Q 005140 352 LIDKK---SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKV 428 (712)
Q Consensus 352 ~~~~~---~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~ 428 (712)
.+... ..+...|.+++|+|++.+|++ ++.++.+++| ++.+.+.+..... .+.|+|++..++...
T Consensus 150 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-----~~~dg~i~i~--d~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 216 (366)
T 3k26_A 150 LVAIFGGVEGHRDEVLSADYDLLGEKIMS-----CGMDHSLKLW--RINSKRMMNAIKE------SYDYNPNKTNRPFIS 216 (366)
T ss_dssp EEEEECSTTSCSSCEEEEEECTTSSEEEE-----EETTSCEEEE--ESCSHHHHHHHHH------HHTCCGGGCSSCCCC
T ss_pred EEEEecccccccCceeEEEECCCCCEEEE-----ecCCCCEEEE--ECCCCccccccce------eEEecCCCCcccccc
Confidence 76554 457778999999999999998 6667666554 5544432221110 223566655433322
Q ss_pred cccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccc--------
Q 005140 429 DRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQH-------- 500 (712)
Q Consensus 429 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~-------- 500 (712)
.... .+ ......+|...|.+++|+ +++|++++.++ .|++||+.+...
T Consensus 217 ~~~~-------------------~~-~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~---~i~~wd~~~~~~~~~~~~~~ 271 (366)
T 3k26_A 217 QKIH-------------------FP-DFSTRDIHRNYVDCVRWL--GDLILSKSCEN---AIVCWKPGKMEDDIDKIKPS 271 (366)
T ss_dssp EEEC-------------------CC-SEEECSSCSSCCCEEEEE--TTEEEEECSSS---EEEEEEESSTTCCGGGCCTT
T ss_pred eeec-------------------cC-ccccccCCcceEEEEEEc--CCEEEEEecCC---EEEEEeCCCccccccccccC
Confidence 1110 00 112344689999999998 78999999999 999999976532
Q ss_pred cCceeEEEEeCCC--ceeEEEEccC--CCeEEEEeccCCCceEEEEECCcceeee------ecc--ccceeeEEECCCCC
Q 005140 501 AGRVSKLTTLKGK--QANALFWSPS--GRFIVLAGLKGFNGQLEFYNVDELETMA------TAE--HFMATDVEWDPTGR 568 (712)
Q Consensus 501 ~~~~~~~~~~~~~--~v~~l~~spd--g~~l~~~~~~~~dg~v~iwd~~~~~~~~------~~~--~~~v~~~~~spdg~ 568 (712)
......+..+..+ .+++++|+|+ |++|++++. ||.|++||+.+++... ..| ...|++++|+|+|+
T Consensus 272 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 348 (366)
T 3k26_A 272 ESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQ---VGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSS 348 (366)
T ss_dssp CCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECT---TSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSS
T ss_pred CcchheeccccccCCcEEEEEEcCCCCCcEEEEEec---CCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCC
Confidence 0112345555433 6899999999 999999998 9999999999765322 233 58899999999999
Q ss_pred EEEEEEccceeccccEEEEEec
Q 005140 569 YVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 569 ~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
+|++++. |+.|+||++.
T Consensus 349 ~l~s~~~-----dg~i~iwd~~ 365 (366)
T 3k26_A 349 ILIAVCD-----DASIWRWDRL 365 (366)
T ss_dssp EEEEEET-----TSEEEEEEC-
T ss_pred eEEEEeC-----CCEEEEEEec
Confidence 9999999 9999999974
No 51
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.4e-31 Score=280.46 Aligned_cols=326 Identities=15% Similarity=0.225 Sum_probs=241.7
Q ss_pred chhhccCCCCCceEEEE----------ECCeeEEEecCCCCC--CCcccccCCCcccceEEEcCCCcEEEEEecCc-eEE
Q 005140 172 LQKWLTDEKARDQFVIR----------SGTDTEVLWNDARHL--KPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAV 238 (712)
Q Consensus 172 l~~~~~~~~~~~~~~~~----------~~~~~~~~w~~~~~~--~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~i 238 (712)
+....++|+++..+++. +.++.+.+|+..... ++... ..|...|++++|||+|++||+++.++ |+|
T Consensus 15 v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~v~v 93 (416)
T 2pm9_A 15 TATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-LQVDSKFNDLDWSHNNKIIAGALDNGSLEL 93 (416)
T ss_dssp SCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC-CCCSSCEEEEEECSSSSCEEEEESSSCEEE
T ss_pred cceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE-EecCCceEEEEECCCCCeEEEEccCCeEEE
Confidence 33455667777666666 678889999984322 13333 35888999999999999999999998 889
Q ss_pred eecccC----cceeeee-cCC-CeeEEEecCC-CCEEEEEcCCCCCCCcCCCccEEEEEEccCCc------eeee---cc
Q 005140 239 WGGANT----FNRLMRY-AHP-QVKLIDFSPG-EKYLVTYSSHEPSNPRDANRVVINIFDVRTGK------VMRD---FK 302 (712)
Q Consensus 239 w~~~~~----~~~~~~~-~~~-~v~~i~~Spd-g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~------~~~~---~~ 302 (712)
|+.. . ...+..+ .|. .|.+++|+|+ +++|++++.+ +.|++||+.+++ .... +.
T Consensus 94 w~~~-~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d----------g~v~iwd~~~~~~~~~~~~~~~~~~~~ 162 (416)
T 2pm9_A 94 YSTN-EANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNN----------GEIFIWDMNKCTESPSNYTPLTPGQSM 162 (416)
T ss_dssp ECCS-STTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSS----------SCEEBCBTTTTSSCTTTCCCBCCCCSC
T ss_pred eecc-cccccccchhhccCCccceEEEEEcCCCCCEEEEEcCC----------CeEEEEECCCCcccccccccccccccc
Confidence 9998 4 3344444 344 4999999998 8999999999 999999998876 3222 23
Q ss_pred CCCcccccCCCCCcCCCCcCeEEecCCC-CCEEEEec-CCeEEEEEcCCceeccccccc------ccCeeeEEECCCC-C
Q 005140 303 GSADEFAVGGTGGVAGVSWPVFRWGGGK-DKYFAKLG-KNMISVYETESFTLIDKKSLK------VENVMDFSWSPTD-P 373 (712)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~s~~d-g~~la~~~-d~~i~iwd~~~~~~~~~~~~~------~~~v~~~~~sp~~-~ 373 (712)
.|...+. +++|+| + +.+|++++ ++.|++||+.+++.+.....+ ...|.+++|+|++ .
T Consensus 163 ~~~~~v~-------------~~~~~~-~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 228 (416)
T 2pm9_A 163 SSVDEVI-------------SLAWNQ-SLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNST 228 (416)
T ss_dssp CSSCCCC-------------EEEECS-SCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTT
T ss_pred CCCCCee-------------EEEeCC-CCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCC
Confidence 4444432 799999 8 78899888 999999999988877655554 5679999999997 5
Q ss_pred eEEEEeecCCCCCC-CeEEEEEecCCc-cceeeee-eeeecceeEEECc-CCCEEEEEEcccccccccccccEEEEEEec
Q 005140 374 IISLFVPELGGGNQ-PARVSLVQIPSK-EELRQKN-LFSVSDCKMYWQS-SGDYLAVKVDRYTKTKKSTYTGFELFRIKE 449 (712)
Q Consensus 374 ~la~~~~~~~~~~~-~~~i~~~~~~~~-~~~~~~~-~~~~~~~~~~~s~-~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 449 (712)
+|++ ++.++ ...|.+|++... ..+.... .+......+.|+| ++.+|++++.++. +.+|++..
T Consensus 229 ~l~~-----~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~---------v~~wd~~~ 294 (416)
T 2pm9_A 229 RVAT-----ATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT---------VLLWNPES 294 (416)
T ss_dssp EEEE-----EECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSE---------EEEECSSS
T ss_pred EEEE-----EECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCC---------EEEeeCCC
Confidence 6666 44554 124555666554 3333333 4556677889999 9999999998877 78898765
Q ss_pred CCcceeEEEecCCCCceEEEEEeeCC-CEEEEEEcCCCCCeEEEEEeecccccCceeE-----------EEE--------
Q 005140 450 RDIPIEVLELDNKNDKIIAFAWEPKG-HRFAVIHGDSPRPDISFYSMRTAQHAGRVSK-----------LTT-------- 509 (712)
Q Consensus 450 ~~~~~~~~~l~~h~~~v~~~~~sp~g-~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~-----------~~~-------- 509 (712)
.. ....+.+|...|.+++|+|++ .+|++++.|+ .|++|++.+......... +..
T Consensus 295 ~~---~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (416)
T 2pm9_A 295 AE---QLSQFPARGNWCFKTKFAPEAPDLFACASFDN---KIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESK 368 (416)
T ss_dssp CC---EEEEEECSSSCCCCEEECTTCTTEEEECCSSS---EEEEEESCCCCCSSCC----------------------CC
T ss_pred Cc---cceeecCCCCceEEEEECCCCCCEEEEEecCC---cEEEEEccCCCCCcccccccccccCCcccccccccccccc
Confidence 32 234566889999999999999 8999999999 999999976542211100 000
Q ss_pred ----------e--CCCceeEEEEccCCCeEEEEeccCCCceEEEEECCc
Q 005140 510 ----------L--KGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE 546 (712)
Q Consensus 510 ----------~--~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~ 546 (712)
. ...++.+++|||+|++|++++. |+.|+||++.+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~---d~~v~~w~~~~ 414 (416)
T 2pm9_A 369 EKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPD---GKGVSITNPKI 414 (416)
T ss_dssp SCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTT---SSCBCCBCCCC
T ss_pred cccccccccCCccccCCccceEEeeCCeEEEEeCC---CCeEEEEEecc
Confidence 0 1235678999999999999987 99999999875
No 52
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.6e-30 Score=282.59 Aligned_cols=305 Identities=8% Similarity=-0.017 Sum_probs=206.1
Q ss_pred EEEecCc-eEEeecccCccee----eee-cC-CCeeEEEecCC------CCEEEEEcCCCCCCCcCCCccEEEEEEccCC
Q 005140 229 ATVHRQG-AAVWGGANTFNRL----MRY-AH-PQVKLIDFSPG------EKYLVTYSSHEPSNPRDANRVVINIFDVRTG 295 (712)
Q Consensus 229 at~~~~~-i~iw~~~~~~~~~----~~~-~~-~~v~~i~~Spd------g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g 295 (712)
|+++.|+ |+||++. +.... ..+ +| ..|.+++|+|+ +.+||+++.| ++|+|||+.++
T Consensus 177 aS~s~D~tI~iWd~~-~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~D----------gtvrlWd~~~~ 245 (524)
T 2j04_B 177 DKEKHSSCIQIFKMN-TSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQE----------GTINFLEIIDN 245 (524)
T ss_dssp -----CEEEEEEEEE-TTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETT----------SCEEEEECCCC
T ss_pred ccCCCCceEEEEEcc-CCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecC----------CeEEEEEcCCC
Confidence 3344566 7899987 44421 222 33 45999999997 5799999999 99999999776
Q ss_pred ce-----------eeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCcee-cccccccccC
Q 005140 296 KV-----------MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTL-IDKKSLKVEN 362 (712)
Q Consensus 296 ~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~-~~~~~~~~~~ 362 (712)
.. ...+.+|...+. +++|++ ++ +|++++ ||+|++||+.++.. ......|...
T Consensus 246 ~~~~~~~~~~~~p~~~l~~h~~~v~-------------sv~~s~-~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~ 310 (524)
T 2j04_B 246 ATDVHVFKMCEKPSLTLSLADSLIT-------------TFDFLS-PT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSY 310 (524)
T ss_dssp SSSSSEEECCCSCSEEECCTTTCEE-------------EEEESS-SS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSC
T ss_pred ccccccceeecCceEEEEcCCCCEE-------------EEEecC-CC-eEEEEeCCCEEEEEECCCCCCceEEeeccccc
Confidence 42 124555554442 799998 75 688887 99999999987643 2334567788
Q ss_pred eeeE--EECCCC-CeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeee--ecceeEEECcCCCEEEEEEccccccccc
Q 005140 363 VMDF--SWSPTD-PIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFS--VSDCKMYWQSSGDYLAVKVDRYTKTKKS 437 (712)
Q Consensus 363 v~~~--~~sp~~-~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~g~~l~~~~~~~~~~~~~ 437 (712)
|.++ +|+|++ .+|++ ++.|+.++|| ++.+.+.+.....+. .....+.|+|++..+++++.+.+
T Consensus 311 V~sv~~~~s~~g~~~laS-----~S~D~tvklW--D~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~t----- 378 (524)
T 2j04_B 311 ILSVSTAYSDFEDTVVST-----VAVDGYFYIF--NPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASS----- 378 (524)
T ss_dssp EEEEEEECCTTSCCEEEE-----EETTSEEEEE--CGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSE-----
T ss_pred EEEEEEEcCCCCCeEEEE-----eccCCeEEEE--ECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCc-----
Confidence 9999 678888 88888 7778777665 444433322222111 12456789999999998888766
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEE-eCCCcee
Q 005140 438 TYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTT-LKGKQAN 516 (712)
Q Consensus 438 ~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~-~~~~~v~ 516 (712)
+++|+++..... ..+.+|.+.|.+++|||+|++|++++.|+ +|++|++..+... ..+.... .....+.
T Consensus 379 ----v~lwd~~~~~~~---~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dg---tv~lwd~~~~~~~-~~~~~~~~~~~~~v~ 447 (524)
T 2j04_B 379 ----LRAVPSRAAFAV---HPLVSRETTITAIGVSRLHPMVLAGSADG---SLIITNAARRLLH-GIKNSSATQKSLRLW 447 (524)
T ss_dssp ----EEEEETTCTTCC---EEEEECSSCEEEEECCSSCCBCEEEETTT---EEECCBSCSSTTT-CC------CCCCEEE
T ss_pred ----EEEEECcccccc---eeeecCCCceEEEEeCCCCCeEEEEECCC---EEEEEechHhhcc-ccccCccceeeeEEE
Confidence 789987654322 34668999999999999999999999999 9999998543211 0000000 1111467
Q ss_pred EEEEccCCCeEEEEeccCCCceEEEEECC-cceeee--eccccceeeEEECCCCC---EEEEEEccceeccccEEEEEec
Q 005140 517 ALFWSPSGRFIVLAGLKGFNGQLEFYNVD-ELETMA--TAEHFMATDVEWDPTGR---YVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 517 ~l~~spdg~~l~~~~~~~~dg~v~iwd~~-~~~~~~--~~~~~~v~~~~~spdg~---~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
+++|||+|..+... ..+.+|+.. ++.++. ..|...|++++|+|++. +||+|+. ++.|+||++.
T Consensus 448 ~v~~sp~g~~~~~~------~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~-----~g~vrlw~l~ 516 (524)
T 2j04_B 448 KWDYSIKDDKYRID------SSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNS-----AGLLTLEYLS 516 (524)
T ss_dssp ECBCCSSSCEEEEC------CCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECT-----TSEEEEEECS
T ss_pred EeccCCCCCeEEcc------CCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhcc-----CceEEEEEcc
Confidence 89999999855331 223344332 233333 36778999999999964 8999998 9999999998
Q ss_pred Cce
Q 005140 591 GKL 593 (712)
Q Consensus 591 g~~ 593 (712)
++.
T Consensus 517 ~~~ 519 (524)
T 2j04_B 517 LEH 519 (524)
T ss_dssp CC-
T ss_pred ccc
Confidence 764
No 53
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=7.3e-30 Score=273.96 Aligned_cols=286 Identities=14% Similarity=0.185 Sum_probs=208.7
Q ss_pred cccCCCcccceEEEcC-CCcEEEEEecCc-eEEeecccCcc--eeeee-cCC-CeeEEEecC-CCCEEEEEcCCCCCCCc
Q 005140 208 VYKRSYWTESFVQWSP-LGTYLATVHRQG-AAVWGGANTFN--RLMRY-AHP-QVKLIDFSP-GEKYLVTYSSHEPSNPR 280 (712)
Q Consensus 208 ~~~~~~~~v~~v~~Sp-dg~~lat~~~~~-i~iw~~~~~~~--~~~~~-~~~-~v~~i~~Sp-dg~~l~t~s~d~~~~~~ 280 (712)
....|...|+||+||| ++++||+|+.|| |+|||+. +.. .+..+ .|. .|.+|+|+| ++++|++++.|
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~-~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D------ 186 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFG-IKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME------ 186 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSS-CCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS------
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECC-CCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC------
Confidence 4456788899999999 578999999999 8899987 433 33333 355 499999998 68999999999
Q ss_pred CCCccEEEEEEccCCceeeeccCC-CcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccc
Q 005140 281 DANRVVINIFDVRTGKVMRDFKGS-ADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSL 358 (712)
Q Consensus 281 ~~~~~~I~iwd~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~ 358 (712)
++|+|||+.++.. ..+..+ .... ...++.|+| ++++|++++ |+.|++||+.. +.+.....
T Consensus 187 ----~~v~iwd~~~~~~-~~~~~~~~~~~-----------~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~ 248 (435)
T 4e54_B 187 ----GTTRLQDFKGNIL-RVFASSDTINI-----------WFCSLDVSA-SSRMVVTGDNVGNVILLNMDG-KELWNLRM 248 (435)
T ss_dssp ----SCEEEEETTSCEE-EEEECCSSCSC-----------CCCCEEEET-TTTEEEEECSSSBEEEEESSS-CBCCCSBC
T ss_pred ----CEEEEeeccCCce-eEEeccCCCCc-----------cEEEEEECC-CCCEEEEEeCCCcEeeeccCc-ceeEEEec
Confidence 9999999866543 333332 2211 011689999 999999999 99999999874 44455567
Q ss_pred cccCeeeEEECCCCC-eEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccc
Q 005140 359 KVENVMDFSWSPTDP-IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKS 437 (712)
Q Consensus 359 ~~~~v~~~~~sp~~~-~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~ 437 (712)
|...|.+++|+|++. +|++ ++.|+.++||.+ ...+..
T Consensus 249 h~~~v~~v~~~p~~~~~~~s-----~s~d~~v~iwd~--~~~~~~----------------------------------- 286 (435)
T 4e54_B 249 HKKKVTHVALNPCCDWFLAT-----ASVDQTVKIWDL--RQVRGK----------------------------------- 286 (435)
T ss_dssp CSSCEEEEEECTTCSSEEEE-----EETTSBCCEEET--TTCCSS-----------------------------------
T ss_pred ccceEEeeeecCCCceEEEE-----ecCcceeeEEec--cccccc-----------------------------------
Confidence 778899999999987 4555 556776665532 211100
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC----
Q 005140 438 TYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK---- 513 (712)
Q Consensus 438 ~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~---- 513 (712)
.......+|...|.+++|+|+|++|++++.|+ .|+||++.++.. ...+..+
T Consensus 287 ----------------~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~---~i~iwd~~~~~~------~~~~~~~~~~~ 341 (435)
T 4e54_B 287 ----------------ASFLYSLPHRHPVNAACFSPDGARLLTTDQKS---EIRVYSASQWDC------PLGLIPHPHRH 341 (435)
T ss_dssp ----------------SCCSBCCBCSSCEEECCBCTTSSEEEEEESSS---CEEEEESSSSSS------EEEECCCCCCC
T ss_pred ----------------ceEEEeeeccccccceeECCCCCeeEEEcCCC---EEEEEECCCCcc------ceEEecccccc
Confidence 00011236789999999999999999999999 999999976543 1222111
Q ss_pred ----ceeEEEEccCCCeEEEEeccC---------CCceEEEEECCcceeeee---ccccceeeE-EECCCCCEEEEEEcc
Q 005140 514 ----QANALFWSPSGRFIVLAGLKG---------FNGQLEFYNVDELETMAT---AEHFMATDV-EWDPTGRYVATAVTS 576 (712)
Q Consensus 514 ----~v~~l~~spdg~~l~~~~~~~---------~dg~v~iwd~~~~~~~~~---~~~~~v~~~-~~spdg~~l~t~s~~ 576 (712)
.+....|+|++.+++++...+ .++.|++||..+++++.. .|...|.++ +|+|+|++|++++
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-- 419 (435)
T 4e54_B 342 FQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-- 419 (435)
T ss_dssp CSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC--
T ss_pred cccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc--
Confidence 234567888888888775321 246799999999888765 455778777 6999999998865
Q ss_pred ceeccccEEEEEecC
Q 005140 577 VHEMENGFNIWSFNG 591 (712)
Q Consensus 577 ~~~~d~~v~iw~~~g 591 (712)
|+.|+||++..
T Consensus 420 ----d~~i~iW~~~~ 430 (435)
T 4e54_B 420 ----GYHILIWSQQE 430 (435)
T ss_dssp ----SSEEEECCCC-
T ss_pred ----CCcEEEEECCc
Confidence 57899999873
No 54
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.97 E-value=4e-29 Score=264.28 Aligned_cols=286 Identities=13% Similarity=0.167 Sum_probs=213.7
Q ss_pred chhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCC------------------cccceEEEcCCCcEEEEEec
Q 005140 172 LQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSY------------------WTESFVQWSPLGTYLATVHR 233 (712)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~------------------~~v~~v~~Spdg~~lat~~~ 233 (712)
+.+..++|+|+ +++...++++.+|+. ..+.....+..|. ..|++++|||+|++||+++.
T Consensus 67 V~~v~fspdg~--~la~g~~~~v~i~~~-~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~ 143 (393)
T 1erj_A 67 VCCVKFSNDGE--YLATGCNKTTQVYRV-SDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE 143 (393)
T ss_dssp CCEEEECTTSS--EEEEECBSCEEEEET-TTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEET
T ss_pred EEEEEECCCCC--EEEEEcCCcEEEEEe-cCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcC
Confidence 44556677776 445556788889998 4454444444432 24889999999999999999
Q ss_pred Cc-eEEeecccCcceeeeec-CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCccccc
Q 005140 234 QG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAV 310 (712)
Q Consensus 234 ~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~ 310 (712)
++ |+|||.. +.+.+..+. |. .|.+++|+|+|++|++++.| ++|++||+.+++....+..+....
T Consensus 144 d~~i~iwd~~-~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d----------~~v~iwd~~~~~~~~~~~~~~~v~-- 210 (393)
T 1erj_A 144 DRLIRIWDIE-NRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD----------RTVRIWDLRTGQCSLTLSIEDGVT-- 210 (393)
T ss_dssp TSCEEEEETT-TTEEEEEECCCSSCEEEEEECTTSSEEEEEETT----------SEEEEEETTTTEEEEEEECSSCEE--
T ss_pred CCeEEEEECC-CCcEEEEEccCCCCEEEEEEcCCCCEEEEecCC----------CcEEEEECCCCeeEEEEEcCCCcE--
Confidence 99 8899999 777666653 44 49999999999999999999 999999999999887776554433
Q ss_pred CCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccc-------cccccCeeeEEECCCCCeEEEEeecC
Q 005140 311 GGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKK-------SLKVENVMDFSWSPTDPIISLFVPEL 382 (712)
Q Consensus 311 ~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~-------~~~~~~v~~~~~sp~~~~la~~~~~~ 382 (712)
+++|+|.++++|++++ |+.|++||+.++..+... ..|...|.+++|+|++.+|++
T Consensus 211 ------------~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s----- 273 (393)
T 1erj_A 211 ------------TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS----- 273 (393)
T ss_dssp ------------EEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEE-----
T ss_pred ------------EEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEE-----
Confidence 6889874678999998 999999999987765433 345667999999999999998
Q ss_pred CCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCC
Q 005140 383 GGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNK 462 (712)
Q Consensus 383 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h 462 (712)
++.|+.+++|.+... ....... .+. .......+.+|
T Consensus 274 ~s~d~~v~~wd~~~~--~~~~~~~-----------~~~-------------------------------~~~~~~~~~~h 309 (393)
T 1erj_A 274 GSLDRSVKLWNLQNA--NNKSDSK-----------TPN-------------------------------SGTCEVTYIGH 309 (393)
T ss_dssp EETTSEEEEEEC-----------------------------------------------------------CEEEEEECC
T ss_pred EeCCCEEEEEECCCC--CCccccc-----------CCC-------------------------------CCcceEEEecc
Confidence 667777666654321 1000000 000 00011334578
Q ss_pred CCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEcc------CCCeEEEEeccC
Q 005140 463 NDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSP------SGRFIVLAGLKG 534 (712)
Q Consensus 463 ~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~sp------dg~~l~~~~~~~ 534 (712)
...|.+++|+|++.+|++++.|+ .|++||+.++. .+..+.+| .|.+++|+| ++++|++++.
T Consensus 310 ~~~v~~~~~~~~~~~l~sgs~D~---~v~iwd~~~~~------~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~-- 378 (393)
T 1erj_A 310 KDFVLSVATTQNDEYILSGSKDR---GVLFWDKKSGN------PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSG-- 378 (393)
T ss_dssp SSCEEEEEECGGGCEEEEEETTS---EEEEEETTTCC------EEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEET--
T ss_pred cCcEEEEEECCCCCEEEEEeCCC---eEEEEECCCCe------EEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECC--
Confidence 99999999999999999999999 99999997654 45555544 689999886 6889999998
Q ss_pred CCceEEEEECCc
Q 005140 535 FNGQLEFYNVDE 546 (712)
Q Consensus 535 ~dg~v~iwd~~~ 546 (712)
||.|+||++..
T Consensus 379 -Dg~i~iW~~~~ 389 (393)
T 1erj_A 379 -DCKARIWKYKK 389 (393)
T ss_dssp -TSEEEEEEEEE
T ss_pred -CCcEEECcccc
Confidence 99999999864
No 55
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.97 E-value=1e-29 Score=263.69 Aligned_cols=270 Identities=14% Similarity=0.191 Sum_probs=209.2
Q ss_pred CCCeeEEEe-----cC-CCCEEEEEcCCCCCCCcCCCccEEEEEEccCC-------ceeeeccCCCcccccCCCCCcCCC
Q 005140 253 HPQVKLIDF-----SP-GEKYLVTYSSHEPSNPRDANRVVINIFDVRTG-------KVMRDFKGSADEFAVGGTGGVAGV 319 (712)
Q Consensus 253 ~~~v~~i~~-----Sp-dg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~ 319 (712)
...|.+++| +| ++++|++++.| ++|+|||+.++ .....+.+|...+.
T Consensus 21 ~~~V~~~~~~~s~~~~~d~~~l~sgs~D----------~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~---------- 80 (343)
T 2xzm_R 21 SDWVTSIVAGFSQKENEDSPVLISGSRD----------KTVMIWKLYEEEQNGYFGIPHKALTGHNHFVS---------- 80 (343)
T ss_dssp SSCEEEEEECCCSSTTCCCCEEEEEETT----------SCEEEEEECSSCCSSBSEEEEEEECCCSSCEE----------
T ss_pred hhhhhheeeEEEeecCCCCCEEEEEcCC----------CEEEEEECCcCCcccccccccchhccCCCceE----------
Confidence 345999999 77 99999999999 99999998643 45677888877663
Q ss_pred CcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCC
Q 005140 320 SWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS 398 (712)
Q Consensus 320 ~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~ 398 (712)
+++|+| ++.++++++ |++|++||+.+++.+.....|...|.+++|+|++++|++ ++.++.+++|... .
T Consensus 81 ---~~~~~~-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s-----~~~d~~i~~wd~~--~ 149 (343)
T 2xzm_R 81 ---DLALSQ-ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILS-----AGAEREIKLWNIL--G 149 (343)
T ss_dssp ---EEEECS-STTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEE-----EETTSCEEEEESS--S
T ss_pred ---EEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEE-----EcCCCEEEEEecc--C
Confidence 799999 999999999 999999999998887777778888999999999999998 7777777766431 1
Q ss_pred ccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCC---
Q 005140 399 KEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG--- 475 (712)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g--- 475 (712)
..... . ....+|...|.+++|+|++
T Consensus 150 -----------------------~~~~~--------------------~---------~~~~~~~~~v~~~~~~~~~~~~ 177 (343)
T 2xzm_R 150 -----------------------ECKFS--------------------S---------AEKENHSDWVSCVRYSPIMKSA 177 (343)
T ss_dssp -----------------------CEEEE--------------------C---------CTTTSCSSCEEEEEECCCCCSC
T ss_pred -----------------------Cceee--------------------e---------ecccCCCceeeeeeeccccccc
Confidence 00000 0 0012567788888888876
Q ss_pred -------CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEeccCCCceEEEEECCc
Q 005140 476 -------HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE 546 (712)
Q Consensus 476 -------~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~ 546 (712)
.+|++++.|+ .|++||... . ....+. ...+++++|+|+|++|++++. ||.|++||+..
T Consensus 178 ~~~~~~~~~l~s~~~d~---~i~iwd~~~-~------~~~~~~~h~~~v~~~~~s~~g~~l~sgs~---dg~v~iwd~~~ 244 (343)
T 2xzm_R 178 NKVQPFAPYFASVGWDG---RLKVWNTNF-Q------IRYTFKAHESNVNHLSISPNGKYIATGGK---DKKLLIWDILN 244 (343)
T ss_dssp SCCCSSCCEEEEEETTS---EEEEEETTT-E------EEEEEECCSSCEEEEEECTTSSEEEEEET---TCEEEEEESSC
T ss_pred cccCCCCCEEEEEcCCC---EEEEEcCCC-c------eeEEEcCccccceEEEECCCCCEEEEEcC---CCeEEEEECCC
Confidence 7899999999 999999421 1 333443 347999999999999999998 99999999953
Q ss_pred -ceeeee-ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCc-eee--e-------------ecccceeeeEEe
Q 005140 547 -LETMAT-AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK-LLY--R-------------TLKDHFFQFLWR 608 (712)
Q Consensus 547 -~~~~~~-~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~-~~~--~-------------~~~~~i~~~~w~ 608 (712)
...... .+...|++++|+|++++|+++ . |+.++||++... ... . .|...+.+++|+
T Consensus 245 ~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~-----d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 318 (343)
T 2xzm_R 245 LTYPQREFDAGSTINQIAFNPKLQWVAVG-T-----DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWN 318 (343)
T ss_dssp CSSCSEEEECSSCEEEEEECSSSCEEEEE-E-----SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEEC
T ss_pred CcccceeecCCCcEEEEEECCCCCEEEEE-C-----CCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEEC
Confidence 333332 245679999999999987655 4 688999998642 211 1 234578999999
Q ss_pred cCCCCCCChhhHHHHH
Q 005140 609 PRPPSFLTPEKEEEIA 624 (712)
Q Consensus 609 p~~~~l~s~~~d~~i~ 624 (712)
|+++.|++++.|+.|+
T Consensus 319 p~g~~l~sg~~Dg~v~ 334 (343)
T 2xzm_R 319 ALGKKLFAGFTDGVIR 334 (343)
T ss_dssp SSSCCEEEEETTSEEE
T ss_pred CCCCeEEEecCCceEE
Confidence 9999999999888664
No 56
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.97 E-value=4.5e-29 Score=266.59 Aligned_cols=321 Identities=13% Similarity=0.131 Sum_probs=241.2
Q ss_pred hhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee-
Q 005140 174 KWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY- 251 (712)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~- 251 (712)
...++|+++- ++....++.+.+|+. ........+..| ..+....|+|+|++||+++.++ |+||+.. +......+
T Consensus 61 ~~~~s~~g~~-l~~~~~d~~v~i~d~-~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~ 136 (420)
T 3vl1_A 61 GNTFEKVGSH-LYKARLDGHDFLFNT-IIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSN-FNLQREIDQ 136 (420)
T ss_dssp TCEEEEEETT-EEEEEETTEEEEEEC-CSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTT-SCEEEEETT
T ss_pred ceeeeecCCe-EEEEEcCCcEEEEEe-cccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCC-Ccceeeecc
Confidence 3445666653 566666889999998 444555555666 4556668999999999999999 8899999 77766665
Q ss_pred cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCC
Q 005140 252 AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK 330 (712)
Q Consensus 252 ~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d 330 (712)
.|. .|.+++|+|++++|++++.| +.|++||+.+++.+..+.+|...+. +++|+| +
T Consensus 137 ~h~~~v~~~~~~~~~~~l~s~s~d----------~~i~iwd~~~~~~~~~~~~h~~~v~-------------~~~~~~-~ 192 (420)
T 3vl1_A 137 AHVSEITKLKFFPSGEALISSSQD----------MQLKIWSVKDGSNPRTLIGHRATVT-------------DIAIID-R 192 (420)
T ss_dssp SSSSCEEEEEECTTSSEEEEEETT----------SEEEEEETTTCCCCEEEECCSSCEE-------------EEEEET-T
T ss_pred cccCccEEEEECCCCCEEEEEeCC----------CeEEEEeCCCCcCceEEcCCCCcEE-------------EEEEcC-C
Confidence 455 49999999999999999999 9999999999999999998887764 799999 9
Q ss_pred CCEEEEec-CCeEEEEEcCCceeccccccc------------------------ccCeeeEEECCCCCeEEEEeecCCCC
Q 005140 331 DKYFAKLG-KNMISVYETESFTLIDKKSLK------------------------VENVMDFSWSPTDPIISLFVPELGGG 385 (712)
Q Consensus 331 g~~la~~~-d~~i~iwd~~~~~~~~~~~~~------------------------~~~v~~~~~sp~~~~la~~~~~~~~~ 385 (712)
+++|++++ |+.|++||+.+++.+.....+ ...+.+++|+|++++|++ ++.
T Consensus 193 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-----~~~ 267 (420)
T 3vl1_A 193 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIA-----GHV 267 (420)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEE-----EET
T ss_pred CCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEE-----EcC
Confidence 99999998 999999999988766544321 244666778999999998 656
Q ss_pred CCCeEEEEEecCCccceeeee-eeeecceeEEECcCCC-EEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCC
Q 005140 386 NQPARVSLVQIPSKEELRQKN-LFSVSDCKMYWQSSGD-YLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKN 463 (712)
Q Consensus 386 ~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~g~-~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~ 463 (712)
++.++ +|++.+.+.+.... .+......+.|+|+|. +|++++.++. +.+|++.....+...+.. .|.
T Consensus 268 dg~i~--i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~---------i~vwd~~~~~~~~~~~~~-~~~ 335 (420)
T 3vl1_A 268 SGVIT--VHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGM---------LAQWDLRSPECPVGEFLI-NEG 335 (420)
T ss_dssp TSCEE--EEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSE---------EEEEETTCTTSCSEEEEE-STT
T ss_pred CCeEE--EEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCe---------EEEEEcCCCcCchhhhhc-cCC
Confidence 66654 55666555443332 2345567789999999 9999998877 899998876554433332 367
Q ss_pred CceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCce-----eEEEEeCCCceeEEEEccCCC---eEEEEeccCC
Q 005140 464 DKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRV-----SKLTTLKGKQANALFWSPSGR---FIVLAGLKGF 535 (712)
Q Consensus 464 ~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~-----~~~~~~~~~~v~~l~~spdg~---~l~~~~~~~~ 535 (712)
..|.++ ++|++++|++++.|+ .|++|++......... ..........+.+++|+|+|+ .+++++.
T Consensus 336 ~~v~~~-~~~~~~~l~s~~~d~---~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~--- 408 (420)
T 3vl1_A 336 TPINNV-YFAAGALFVSSGFDT---SIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGK--- 408 (420)
T ss_dssp SCEEEE-EEETTEEEEEETTTE---EEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEET---
T ss_pred CCceEE-EeCCCCEEEEecCCc---cEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcC---
Confidence 778777 456889999999999 9999999763221100 111122234689999999999 6666666
Q ss_pred CceEEEEECCc
Q 005140 536 NGQLEFYNVDE 546 (712)
Q Consensus 536 dg~v~iwd~~~ 546 (712)
+|.+.+|++..
T Consensus 409 ~g~~~~~~~~~ 419 (420)
T 3vl1_A 409 NNFCALYNLSN 419 (420)
T ss_dssp TTEEEEEESCC
T ss_pred CceEEEEeccC
Confidence 89999999863
No 57
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=4.9e-29 Score=259.78 Aligned_cols=294 Identities=13% Similarity=0.197 Sum_probs=220.0
Q ss_pred cccCCCcccceEEEcCCCcEE-EEEec---Cc-eEEeecccCcce--eeeecCC-CeeEEEecCC---CCEEEEEcCCCC
Q 005140 208 VYKRSYWTESFVQWSPLGTYL-ATVHR---QG-AAVWGGANTFNR--LMRYAHP-QVKLIDFSPG---EKYLVTYSSHEP 276 (712)
Q Consensus 208 ~~~~~~~~v~~v~~Spdg~~l-at~~~---~~-i~iw~~~~~~~~--~~~~~~~-~v~~i~~Spd---g~~l~t~s~d~~ 276 (712)
.+++|...|++++|+|+|..| ++++. ++ |+||+.. +... ...+.|. .|.+++|+|+ |++|++++.+
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d-- 89 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQ-HGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG-- 89 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEEC-SSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT--
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCC-CCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC--
Confidence 457799999999999999655 55654 67 8899998 5544 3333454 5999999999 7999999999
Q ss_pred CCCcCCCccEEEEEEccCCc-eeeeccCCCcccccCCCCCcCCCCcCeE------EecCCCCCEEEEec-CCeEEEEEcC
Q 005140 277 SNPRDANRVVINIFDVRTGK-VMRDFKGSADEFAVGGTGGVAGVSWPVF------RWGGGKDKYFAKLG-KNMISVYETE 348 (712)
Q Consensus 277 ~~~~~~~~~~I~iwd~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~s~~dg~~la~~~-d~~i~iwd~~ 348 (712)
+.|++||+.+++ .+..+.+|...+. ++ +|+| ++++|++++ |+.|++|++.
T Consensus 90 --------g~i~iwd~~~~~~~~~~~~~~~~~v~-------------~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~ 147 (357)
T 3i2n_A 90 --------GNLHIWNLEAPEMPVYSVKGHKEIIN-------------AIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPR 147 (357)
T ss_dssp --------SCEEEECTTSCSSCSEEECCCSSCEE-------------EEEEESGGGCC--CCCEEEEEETTSCEEEECTT
T ss_pred --------CeEEEEeCCCCCccEEEEEecccceE-------------EEeeccccccCC-CccEEEEEeCCCeEEEEeCC
Confidence 999999999888 8888888877652 45 5689 999999999 9999999999
Q ss_pred Cce-ecccccccc----cCeeeEE----ECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECc
Q 005140 349 SFT-LIDKKSLKV----ENVMDFS----WSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS 419 (712)
Q Consensus 349 ~~~-~~~~~~~~~----~~v~~~~----~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 419 (712)
++. .+.....+. ..+.+++ |+|++.+|++ ++.++ .|.+|++.+.+.... ..+......+.|+|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~-----~~~d~--~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~ 219 (357)
T 3i2n_A 148 QKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCA-----GYDNG--DIKLFDLRNMALRWE-TNIKNGVCSLEFDR 219 (357)
T ss_dssp SCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEE-----EETTS--EEEEEETTTTEEEEE-EECSSCEEEEEESC
T ss_pred CCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEE-----EccCC--eEEEEECccCceeee-cCCCCceEEEEcCC
Confidence 776 443332222 2578887 7899999998 55555 455667666554332 23445667789999
Q ss_pred ---CCCEEEEEEcccccccccccccEEEEEEecCCcc--eeEEEecCCCCceEEEEEeeCCC-EEEEEEcCCCCCeEEEE
Q 005140 420 ---SGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIP--IEVLELDNKNDKIIAFAWEPKGH-RFAVIHGDSPRPDISFY 493 (712)
Q Consensus 420 ---~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~l~~h~~~v~~~~~sp~g~-~l~~~~~d~~~~~v~i~ 493 (712)
++.+|++++.++. +.+|++...... .....+.+|...|.+++|+|++. +|++++.|+ .|++|
T Consensus 220 ~~~~~~~l~~~~~dg~---------i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~iw 287 (357)
T 3i2n_A 220 KDISMNKLVATSLEGK---------FHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAG---GLHLW 287 (357)
T ss_dssp SSSSCCEEEEEESTTE---------EEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS---EEEEE
T ss_pred CCCCCCEEEEECCCCe---------EEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCC---cEEEe
Confidence 9999999988876 889998763222 12224458999999999999998 899999999 99999
Q ss_pred EeecccccC-------------ceeEEEEeCCC--ceeEEEEccCCCeEE-EEeccCCCceEEEEECCccee
Q 005140 494 SMRTAQHAG-------------RVSKLTTLKGK--QANALFWSPSGRFIV-LAGLKGFNGQLEFYNVDELET 549 (712)
Q Consensus 494 d~~~~~~~~-------------~~~~~~~~~~~--~v~~l~~spdg~~l~-~~~~~~~dg~v~iwd~~~~~~ 549 (712)
+++.+.... ....+..+..+ .+++++|+|+|++|+ +++. ||.|++||+.+.+.
T Consensus 288 d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~---d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 288 KYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSF---DQTVRVLIVTKLNK 356 (357)
T ss_dssp EEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEET---TSEEEEEEECC---
T ss_pred ecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecC---CCcEEEEECCCccc
Confidence 998643211 12345555544 799999999999998 6887 99999999986654
No 58
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=3.2e-30 Score=271.34 Aligned_cols=298 Identities=14% Similarity=0.175 Sum_probs=209.4
Q ss_pred ccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCc--ceeeeec-CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCC
Q 005140 209 YKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTF--NRLMRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDAN 283 (712)
Q Consensus 209 ~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~--~~~~~~~-~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~ 283 (712)
++.+...|++++|||+|++||+++.++ |+||+.. +. ..+..+. |. .|.+++|+|+|++|++++.|
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~-~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d--------- 76 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQD-GNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD--------- 76 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEE-TTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETT---------
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEcc-CCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCC---------
Confidence 344667899999999999999999998 8899998 55 5555553 44 49999999999999999999
Q ss_pred ccEEEEEEccCCc---eeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCcee---cccc
Q 005140 284 RVVINIFDVRTGK---VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTL---IDKK 356 (712)
Q Consensus 284 ~~~I~iwd~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~---~~~~ 356 (712)
+.|++||+.++. ....+..|...+. +++|+| ++++|++++ |+.|++|++.++.. ....
T Consensus 77 -~~v~vwd~~~~~~~~~~~~~~~~~~~v~-------------~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 141 (377)
T 3dwl_C 77 -RNAYVYEKRPDGTWKQTLVLLRLNRAAT-------------FVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHL 141 (377)
T ss_dssp -SSEEEC------CCCCEEECCCCSSCEE-------------EEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEE
T ss_pred -CeEEEEEcCCCCceeeeeEecccCCceE-------------EEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEe
Confidence 999999998887 5667777776653 799999 999999998 99999999997762 3333
Q ss_pred cc-cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccc
Q 005140 357 SL-KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTK 435 (712)
Q Consensus 357 ~~-~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~ 435 (712)
.. |...|.+++|+|++++|++ ++.++.+++|............ ..+.+..+-.
T Consensus 142 ~~~h~~~v~~~~~~~~~~~l~~-----~~~d~~i~iwd~~~~~~~~~~~------------~~~~~~~~~~--------- 195 (377)
T 3dwl_C 142 KRPLRSTILSLDWHPNNVLLAA-----GCADRKAYVLSAYVRDVDAKPE------------ASVWGSRLPF--------- 195 (377)
T ss_dssp CSSCCSCEEEEEECTTSSEEEE-----EESSSCEEEEEECCSSCC-CCC------------SCSSCSCCCE---------
T ss_pred ecccCCCeEEEEEcCCCCEEEE-----EeCCCEEEEEEEEecccCCCcc------------ccccccccch---------
Confidence 34 6778999999999999998 7788887777664322110000 0011110000
Q ss_pred ccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CC
Q 005140 436 KSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GK 513 (712)
Q Consensus 436 ~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~ 513 (712)
......+ +|...|.+++|+|+|++|++++.|+ .|++||+.++... ...+..+. ..
T Consensus 196 -----------------~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~---~i~iwd~~~~~~~--~~~~~~~~~~~~ 252 (377)
T 3dwl_C 196 -----------------NTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDS---SVTIAYPSAPEQP--PRALITVKLSQL 252 (377)
T ss_dssp -----------------EEEEECC-CCSSSEEEEEECTTSSCEEEEETTT---EEC-CEECSTTSC--EEECCCEECSSS
T ss_pred -----------------hhhhhcc-cCCceEEEEEECCCCCEEEEEeCCC---cEEEEECCCCCCc--ceeeEeecCCCC
Confidence 0011223 7889999999999999999999999 9999999876531 11133333 34
Q ss_pred ceeEEEEccCCCeEEEEeccCCCceEEEEECCcce---------------------------------------------
Q 005140 514 QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELE--------------------------------------------- 548 (712)
Q Consensus 514 ~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~--------------------------------------------- 548 (712)
.+.+++|+|+|++|++++. ++ +.+|+.....
T Consensus 253 ~v~~~~~s~~~~~l~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (377)
T 3dwl_C 253 PLRSLLWANESAIVAAGYN---YS-PILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMD 328 (377)
T ss_dssp CEEEEEEEETTEEEEEESS---SS-EEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-----------------
T ss_pred ceEEEEEcCCCCEEEEEcC---Cc-EEEEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchh
Confidence 6899999999999998874 44 4477654111
Q ss_pred ---------eeeeccccceeeEEECCCC-C---EEEEEEccceeccccEEEEEe
Q 005140 549 ---------TMATAEHFMATDVEWDPTG-R---YVATAVTSVHEMENGFNIWSF 589 (712)
Q Consensus 549 ---------~~~~~~~~~v~~~~~spdg-~---~l~t~s~~~~~~d~~v~iw~~ 589 (712)
.+...|...|+++++.+.+ . .|++++. |+.|+||++
T Consensus 329 ~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~-----Dg~i~iWdl 377 (377)
T 3dwl_C 329 LKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGT-----DGRVVLWTL 377 (377)
T ss_dssp --------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEET-----TSEEEEECC
T ss_pred hccccccccccCccccceeEEEeccCCCCCceEEEEeecC-----CCcEEEecC
Confidence 0001277889999976543 3 6999999 999999985
No 59
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.97 E-value=3.3e-29 Score=256.17 Aligned_cols=268 Identities=16% Similarity=0.288 Sum_probs=214.8
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCE
Q 005140 254 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 333 (712)
Q Consensus 254 ~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ 333 (712)
..|.+++|+|+|++|++++.| +.|++|++.+++....+.+|...+. +++|+| ++++
T Consensus 24 ~~v~~~~~s~~~~~l~s~~~d----------g~i~iw~~~~~~~~~~~~~h~~~v~-------------~~~~~~-~~~~ 79 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSSAD----------KLIKIWGAYDGKFEKTISGHKLGIS-------------DVAWSS-DSNL 79 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETT----------SCEEEEETTTCCEEEEECCCSSCEE-------------EEEECT-TSSE
T ss_pred CcEEEEEECCCCCEEEEeeCC----------CeEEEEeCCCcccchhhccCCCceE-------------EEEEcC-CCCE
Confidence 459999999999999999999 9999999999999999998877663 799999 9999
Q ss_pred EEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecc
Q 005140 334 FAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSD 412 (712)
Q Consensus 334 la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 412 (712)
|++++ |+.|++||+.+++.+.....|...|.+++|+|++++|++ ++.++.+++| ++.+.+
T Consensus 80 l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-----~~~d~~i~iw--d~~~~~------------ 140 (312)
T 4ery_A 80 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS-----GSFDESVRIW--DVKTGK------------ 140 (312)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEE-----EETTSCEEEE--ETTTCC------------
T ss_pred EEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE-----EeCCCcEEEE--ECCCCE------------
Confidence 99998 999999999988877766677778999999999998888 6666665544 322111
Q ss_pred eeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEE
Q 005140 413 CKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISF 492 (712)
Q Consensus 413 ~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i 492 (712)
....+..|..+|.+++|+|++++|++++.|+ .|++
T Consensus 141 ------------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~~ 175 (312)
T 4ery_A 141 ------------------------------------------CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG---LCRI 175 (312)
T ss_dssp ------------------------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTS---CEEE
T ss_pred ------------------------------------------EEEEecCCCCcEEEEEEcCCCCEEEEEeCCC---cEEE
Confidence 0122446788999999999999999999999 9999
Q ss_pred EEeecccccCceeEEEEeC---CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccc---eeeEEEC
Q 005140 493 YSMRTAQHAGRVSKLTTLK---GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFM---ATDVEWD 564 (712)
Q Consensus 493 ~d~~~~~~~~~~~~~~~~~---~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~---v~~~~~s 564 (712)
||+.++. .+..+. ...+..++|+|+|++|++++. ||.|++||+.+++.+.. .|... +......
T Consensus 176 wd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (312)
T 4ery_A 176 WDTASGQ------CLKTLIDDDNPPVSFVKFSPNGKYILAATL---DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 246 (312)
T ss_dssp EETTTCC------EEEEECCSSCCCEEEEEECTTSSEEEEEET---TTEEEEEETTTTEEEEEECSSCCSSSCCCEEEEC
T ss_pred EECCCCc------eeeEEeccCCCceEEEEECCCCCEEEEEcC---CCeEEEEECCCCcEEEEEEecCCceEEEEEEEEe
Confidence 9997654 333332 336899999999999999998 99999999998887664 23322 2223344
Q ss_pred CCCCEEEEEEccceeccccEEEEEecCc-eeeee--cccceeeeEEecCCCCCCChh--hHHHH
Q 005140 565 PTGRYVATAVTSVHEMENGFNIWSFNGK-LLYRT--LKDHFFQFLWRPRPPSFLTPE--KEEEI 623 (712)
Q Consensus 565 pdg~~l~t~s~~~~~~d~~v~iw~~~g~-~~~~~--~~~~i~~~~w~p~~~~l~s~~--~d~~i 623 (712)
+++.+|++++. |+.|++|++... .+... |.+.+..++|+|++..+++++ .|+.|
T Consensus 247 ~~~~~l~sg~~-----dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i 305 (312)
T 4ery_A 247 TGGKWIVSGSE-----DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 305 (312)
T ss_dssp SSSCEEEECCT-----TSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCE
T ss_pred CCCcEEEEECC-----CCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccE
Confidence 78899999999 999999998744 44333 668899999999999999875 45544
No 60
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=2.4e-28 Score=264.76 Aligned_cols=324 Identities=12% Similarity=0.149 Sum_probs=247.1
Q ss_pred EecCCCCCCCcccccCCCccc-ceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-CC-CeeEEEecCCCCEEEEE
Q 005140 196 LWNDARHLKPEPVYKRSYWTE-SFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPGEKYLVTY 271 (712)
Q Consensus 196 ~w~~~~~~~~~~~~~~~~~~v-~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~~Spdg~~l~t~ 271 (712)
.|..+........+.+|...+ +++++ ++.+|++++.++ |++||.. +++.+..+. |. .|.+++|+|++ +|+++
T Consensus 104 ~w~~~~~~~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~-~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~ 179 (464)
T 3v7d_B 104 NWYNPKFVPQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSI-NKKFLLQLSGHDGGVWALKYAHGG-ILVSG 179 (464)
T ss_dssp HHHCTTCCCEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEECSTT-EEEEE
T ss_pred hhcCCCcCcceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECC-CCcEEEEEeCCCcCEEEEEEcCCC-EEEEE
Confidence 454433334455778888775 55555 678999999999 8899999 777777764 44 49999999998 99999
Q ss_pred cCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEec--CCCCCEEEEec-CCeEEEEEcC
Q 005140 272 SSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWG--GGKDKYFAKLG-KNMISVYETE 348 (712)
Q Consensus 272 s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~dg~~la~~~-d~~i~iwd~~ 348 (712)
+.| ++|++||+.+++.+..+.+|...+. +++|+ + ++.+|++++ |+.|++|++.
T Consensus 180 s~d----------g~i~vwd~~~~~~~~~~~~h~~~v~-------------~l~~~~~~-~~~~l~s~s~d~~i~vwd~~ 235 (464)
T 3v7d_B 180 STD----------RTVRVWDIKKGCCTHVFEGHNSTVR-------------CLDIVEYK-NIKYIVTGSRDNTLHVWKLP 235 (464)
T ss_dssp ETT----------SCEEEEETTTTEEEEEECCCSSCEE-------------EEEEEESS-SCEEEEEEETTSCEEEEECC
T ss_pred eCC----------CCEEEEECCCCcEEEEECCCCCccE-------------EEEEecCC-CCCEEEEEcCCCcEEEeeCC
Confidence 999 9999999999999999998877763 57777 6 788999999 9999999998
Q ss_pred Cceecc-----------------------cccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeee
Q 005140 349 SFTLID-----------------------KKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK 405 (712)
Q Consensus 349 ~~~~~~-----------------------~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 405 (712)
++.... ....|...+.++ +|++.+|++ ++.++.+ .+|++.+.+.+...
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~-----~~~d~~i--~vwd~~~~~~~~~~ 306 (464)
T 3v7d_B 236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVS-----GSYDNTL--IVWDVAQMKCLYIL 306 (464)
T ss_dssp CCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEE-----EETTSCE--EEEETTTTEEEEEE
T ss_pred CCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEE-----EeCCCeE--EEEECCCCcEEEEe
Confidence 765332 122233345544 678899998 6666654 45666666666665
Q ss_pred eeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCC
Q 005140 406 NLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDS 485 (712)
Q Consensus 406 ~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~ 485 (712)
..+......+.|+|+|.++++++.++. +.+|++... .....+.+|...|.+++|+ +++|++++.|+
T Consensus 307 ~~~~~~v~~~~~~~~~~~l~sg~~dg~---------i~vwd~~~~---~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg 372 (464)
T 3v7d_B 307 SGHTDRIYSTIYDHERKRCISASMDTT---------IRIWDLENG---ELMYTLQGHTALVGLLRLS--DKFLVSAAADG 372 (464)
T ss_dssp CCCSSCEEEEEEETTTTEEEEEETTSC---------EEEEETTTT---EEEEEECCCSSCEEEEEEC--SSEEEEEETTS
T ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCc---------EEEEECCCC---cEEEEEeCCCCcEEEEEEc--CCEEEEEeCCC
Confidence 556666778899999999999999887 889987643 2335677899999999997 68999999999
Q ss_pred CCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee---ccccceeeEE
Q 005140 486 PRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT---AEHFMATDVE 562 (712)
Q Consensus 486 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~---~~~~~v~~~~ 562 (712)
.|++||+.+... .........+..++|+|+|+++++++ +|.|++||+.+++.+.. .+...|.+++
T Consensus 373 ---~v~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~----dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~ 440 (464)
T 3v7d_B 373 ---SIRGWDANDYSR-----KFSYHHTNLSAITTFYVSDNILVSGS----ENQFNIYNLRSGKLVHANILKDADQIWSVN 440 (464)
T ss_dssp ---EEEEEETTTCCE-----EEEEECTTCCCEEEEEECSSEEEEEE----TTEEEEEETTTCCEEESCTTTTCSEEEEEE
T ss_pred ---cEEEEECCCCce-----eeeecCCCCccEEEEEeCCCEEEEec----CCeEEEEECCCCcEEehhhccCCCcEEEEE
Confidence 999999976542 22222355678899999999999887 79999999999988864 5668899999
Q ss_pred ECCCCCEEEEEEccceeccccEEEEE
Q 005140 563 WDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 563 ~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
|+ ++.+++++.. ++.+.+|-
T Consensus 441 ~~--~~~l~~~~~~----~g~~~i~~ 460 (464)
T 3v7d_B 441 FK--GKTLVAAVEK----DGQSFLEI 460 (464)
T ss_dssp EE--TTEEEEEEEE----TTEEEEEE
T ss_pred ec--CCEEEEEEEe----CCeEEEEE
Confidence 97 5555555542 55555543
No 61
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=1.6e-28 Score=262.37 Aligned_cols=278 Identities=15% Similarity=0.247 Sum_probs=215.0
Q ss_pred cccceEEEcCCCcEEEEEecCceEEeecccCcceeeee--c-CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEE
Q 005140 214 WTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRY--A-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINI 289 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~--~-~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~i 289 (712)
..++.|+||+++ +||+|....|+|||.. +++.+..+ + |. .|++|+|||+|++||+|+.| +.|+|
T Consensus 106 ~y~~~l~wS~~n-~lAvgld~tV~lWd~~-tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~D----------g~v~i 173 (420)
T 4gga_A 106 YYLNLVDWSSGN-VLAVALDNSVYLWSAS-SGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS----------AEVQL 173 (420)
T ss_dssp TTCBCEEECTTS-EEEEEETTEEEEEETT-TCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT----------SCEEE
T ss_pred ccceeEEECCCC-EEEEEeCCEEEEEECC-CCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECC----------CeEEE
Confidence 457889999865 8888876559999999 77655544 2 33 39999999999999999999 99999
Q ss_pred EEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCce-ecccccccccCeeeEE
Q 005140 290 FDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT-LIDKKSLKVENVMDFS 367 (712)
Q Consensus 290 wd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~ 367 (712)
||+.+++.++.+.+|...+ .+++. ++.+|++++ ++.+.+|+..... .+.....|...+..+.
T Consensus 174 Wd~~~~~~~~~~~~h~~~v---------------~~~s~-~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~ 237 (420)
T 4gga_A 174 WDVQQQKRLRNMTSHSARV---------------GSLSW-NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR 237 (420)
T ss_dssp EETTTTEEEEEECCCSSCE---------------EEEEE-ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred EEcCCCcEEEEEeCCCCce---------------EEEee-CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeee
Confidence 9999999999999987765 34555 678999998 9999999987543 3334456777788999
Q ss_pred ECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEE
Q 005140 368 WSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRI 447 (712)
Q Consensus 368 ~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l 447 (712)
|+|++.++++ ++.++.+++|........
T Consensus 238 ~~~~g~~l~s-----~~~D~~v~i~~~~~~~~~----------------------------------------------- 265 (420)
T 4gga_A 238 WAPDGRHLAS-----GGNDNLVNVWPSAPGEGG----------------------------------------------- 265 (420)
T ss_dssp ECTTSSEEEE-----EETTSCEEEEESSCCSSC-----------------------------------------------
T ss_pred ecCCCCeeee-----eeccccceEEeecccccc-----------------------------------------------
Confidence 9999998888 666666665543211100
Q ss_pred ecCCcceeEEEecCCCCceEEEEEeeCCC-EEEEEE--cCCCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccC
Q 005140 448 KERDIPIEVLELDNKNDKIIAFAWEPKGH-RFAVIH--GDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPS 523 (712)
Q Consensus 448 ~~~~~~~~~~~l~~h~~~v~~~~~sp~g~-~l~~~~--~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spd 523 (712)
.........|...|.+++|+|.+. .+++++ .|+ .|+|||+.++. .+..+. ...+.++.|+|+
T Consensus 266 -----~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~---~I~iwd~~t~~------~~~~~~~~~~v~~~~~~~~ 331 (420)
T 4gga_A 266 -----WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR---HIRIWNVCSGA------CLSAVDAHSQVCSILWSPH 331 (420)
T ss_dssp -----SCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTC---EEEEEETTTTE------EEEEEECSSCEEEEEEETT
T ss_pred -----ceeeeeecccCCceeeeeeCCCcccEEEEEeecCCC---EEEEEeCCccc------cceeeccccceeeeeecCC
Confidence 000022336788999999999765 445544 366 99999997755 444444 447899999999
Q ss_pred CCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 524 GRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 524 g~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
++.+++++.. .|+.|+|||+.+++++.. +|...|++++|+|||++|++++. |++|+||++..
T Consensus 332 ~~~lv~~sg~-~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~-----D~tvriWdv~~ 395 (420)
T 4gga_A 332 YKELISGHGF-AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA-----DETLRLWRCFE 395 (420)
T ss_dssp TTEEEEEECT-TTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET-----TTEEEEECCSC
T ss_pred CCeEEEEEec-CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEec-----CCeEEEEECCC
Confidence 9999987622 289999999999988875 67899999999999999999999 99999999763
No 62
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=4.1e-29 Score=265.46 Aligned_cols=350 Identities=11% Similarity=0.085 Sum_probs=226.7
Q ss_pred eEEEecCCCCCCCcccccCCCcccceEEEcC-CCcEEEEEecCc-eEEeecccCcceeeeec--------------CC-C
Q 005140 193 TEVLWNDARHLKPEPVYKRSYWTESFVQWSP-LGTYLATVHRQG-AAVWGGANTFNRLMRYA--------------HP-Q 255 (712)
Q Consensus 193 ~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Sp-dg~~lat~~~~~-i~iw~~~~~~~~~~~~~--------------~~-~ 255 (712)
.+.+|+. ........+.+|...|++++|+| +|++||+++.++ |+||+.. +......+. |. .
T Consensus 24 ~~~v~~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (408)
T 4a11_B 24 TRRVLGL-ELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLE-NSSRQSYYTCKAVCSIGRDHPDVHRYS 101 (408)
T ss_dssp HHHHHTE-EECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECC-CCSSSSCEEECEEEEECTTCTTCCSSC
T ss_pred cceeecc-ccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECC-CCcccceEeccccccccccccccCCCc
Confidence 3446666 34556667788999999999999 999999999999 8899998 554433331 44 4
Q ss_pred eeEEEecC-CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCC--
Q 005140 256 VKLIDFSP-GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK-- 332 (712)
Q Consensus 256 v~~i~~Sp-dg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~-- 332 (712)
|.+++|+| ++.+|++++.+ +.|++||+.+++.+..+....... .+.|++ .+.
T Consensus 102 v~~~~~~~~~~~~l~s~~~d----------~~i~iwd~~~~~~~~~~~~~~~~~--------------~~~~~~-~~~~~ 156 (408)
T 4a11_B 102 VETVQWYPHDTGMFTSSSFD----------KTLKVWDTNTLQTADVFNFEETVY--------------SHHMSP-VSTKH 156 (408)
T ss_dssp EEEEEECTTCTTCEEEEETT----------SEEEEEETTTTEEEEEEECSSCEE--------------EEEECS-SCSSC
T ss_pred EEEEEEccCCCcEEEEEeCC----------CeEEEeeCCCCccceeccCCCcee--------------eeEeec-CCCCC
Confidence 99999999 78899999999 999999999999888876543332 577777 554
Q ss_pred -EEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCe-EEEEeecCCCCCCCeEEEEEecCCcc-ceeeeeee
Q 005140 333 -YFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPI-ISLFVPELGGGNQPARVSLVQIPSKE-ELRQKNLF 408 (712)
Q Consensus 333 -~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~-la~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~ 408 (712)
++++++ ++.|.+|++.++..+.....|...|.+++|+|++.. |++ ++.++.+++| ++.... .+....
T Consensus 157 ~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~-----~~~dg~i~i~--d~~~~~~~~~~~~-- 227 (408)
T 4a11_B 157 CLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILAT-----ASADSRVKLW--DVRRASGCLITLD-- 227 (408)
T ss_dssp CEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEE-----EETTSCEEEE--ETTCSSCCSEECC--
T ss_pred cEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEE-----EcCCCcEEEE--ECCCCCccccccc--
Confidence 888888 999999999988877777678888999999999985 666 5566665554 443322 110000
Q ss_pred eecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCC
Q 005140 409 SVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRP 488 (712)
Q Consensus 409 ~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~ 488 (712)
...+.. .........+|...|.+++|+|++++|++++.|+
T Consensus 228 ---------~~~~~~----------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--- 267 (408)
T 4a11_B 228 ---------QHNGKK----------------------------SQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDN--- 267 (408)
T ss_dssp ---------TTTTCS----------------------------CCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTS---
T ss_pred ---------cccccc----------------------------ceeeccccccccCceeEEEEcCCCCEEEEecCCC---
Confidence 000000 0000011236789999999999999999999999
Q ss_pred eEEEEEeecccccCceeEEE-EeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECC
Q 005140 489 DISFYSMRTAQHAGRVSKLT-TLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDP 565 (712)
Q Consensus 489 ~v~i~d~~~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~sp 565 (712)
.|++|++.++.......... ...............+..+++++. ++.|++||+.+++.+.. .|...|++++|+|
T Consensus 268 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~ 344 (408)
T 4a11_B 268 RMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY---GSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS 344 (408)
T ss_dssp CEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE---TTEEEEEETTTCCEEEEECCCSSCEEEEEEET
T ss_pred eEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEec---CCEEEEEECcCCcceeeeccCCCeEEEEEEcC
Confidence 99999997654310000000 000111222222334455666666 89999999999888775 5678999999999
Q ss_pred CCCEEEEEEccceeccccEEEEEecCceeeeecccceeeeEEecCCC-CCCChhhHHHHHHH
Q 005140 566 TGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLKDHFFQFLWRPRPP-SFLTPEKEEEIAKN 626 (712)
Q Consensus 566 dg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~~~~~i~~~~w~p~~~-~l~s~~~d~~i~~~ 626 (712)
+|++|++++. |+.+++|++.................+.|... .+.+.+.++.++-|
T Consensus 345 ~~~~l~s~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W 401 (408)
T 4a11_B 345 NFQELYSGSR-----DCNILAWVPSLYEPVPDDDETTTKSQLNPAFEDAWSSSDEEGGTSAW 401 (408)
T ss_dssp TTTEEEEEET-----TSCEEEEEECC------------------------------------
T ss_pred CCCEEEEECC-----CCeEEEEeCCCCCccCCCCceEeccccccccceeecccCccCceeec
Confidence 9999999999 99999999985433222111112233334322 33344555555533
No 63
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.5e-29 Score=259.06 Aligned_cols=283 Identities=12% Similarity=0.171 Sum_probs=221.5
Q ss_pred CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC
Q 005140 253 HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 331 (712)
Q Consensus 253 ~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg 331 (712)
|. .|.+++|+|+|++|++++.+ +.|++||+.+++.+..+.+|...+. +++|+| ++
T Consensus 31 h~~~v~~~~~s~~~~~l~~~~~d----------g~i~vwd~~~~~~~~~~~~h~~~v~-------------~~~~~~-~~ 86 (369)
T 3zwl_B 31 HERPLTQVKYNKEGDLLFSCSKD----------SSASVWYSLNGERLGTLDGHTGTIW-------------SIDVDC-FT 86 (369)
T ss_dssp CSSCEEEEEECTTSCEEEEEESS----------SCEEEEETTTCCEEEEECCCSSCEE-------------EEEECT-TS
T ss_pred eeceEEEEEEcCCCCEEEEEeCC----------CEEEEEeCCCchhhhhhhhcCCcEE-------------EEEEcC-CC
Confidence 44 49999999999999999999 9999999999999999998887764 799999 99
Q ss_pred CEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCC---CCeEEEEEecCCccceeeeee
Q 005140 332 KYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGN---QPARVSLVQIPSKEELRQKNL 407 (712)
Q Consensus 332 ~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~ 407 (712)
++|++++ |+.|++|++.+++.+.... +...+.+++|+|++++|++ ++.+ ....|.+|++..........
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~-----~~~~~~~~~g~i~~~d~~~~~~~~~~~- 159 (369)
T 3zwl_B 87 KYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLA-----ILDNVMKNPGSINIYEIERDSATHELT- 159 (369)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEE-----EECCBTTBCCEEEEEEEEECTTTCCEE-
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEE-----ecCCccCCCCEEEEEEecCCccceeec-
Confidence 9999998 9999999999888776554 5667999999999999998 3343 11334444432221111000
Q ss_pred eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCC--ceEEEEEeeCCCEEEEEEcCC
Q 005140 408 FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKND--KIIAFAWEPKGHRFAVIHGDS 485 (712)
Q Consensus 408 ~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~--~v~~~~~sp~g~~l~~~~~d~ 485 (712)
... ..+. ..+..|.. .+.+++|+|++++|++++.++
T Consensus 160 ------------------~~~----------------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 197 (369)
T 3zwl_B 160 ------------------KVS----------------------EEPI--HKIITHEGLDAATVAGWSTKGKYIIAGHKDG 197 (369)
T ss_dssp ------------------EEC----------------------SSCS--EEEECCTTCCCEEEEEECGGGCEEEEEETTS
T ss_pred ------------------ccc----------------------ccee--eeccCCcCccceeEEEEcCCCCEEEEEcCCC
Confidence 000 0000 11223444 899999999999999999999
Q ss_pred CCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee-ccccceeeEE
Q 005140 486 PRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-AEHFMATDVE 562 (712)
Q Consensus 486 ~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~-~~~~~v~~~~ 562 (712)
.|++||+.+... .+..+. ...+.+++|+|+|++|++++. ||.|++||+.+++.+.. .+...+..++
T Consensus 198 ---~i~i~d~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~ 266 (369)
T 3zwl_B 198 ---KISKYDVSNNYE-----YVDSIDLHEKSISDMQFSPDLTYFITSSR---DTNSFLVDVSTLQVLKKYETDCPLNTAV 266 (369)
T ss_dssp ---EEEEEETTTTTE-----EEEEEECCSSCEEEEEECTTSSEEEEEET---TSEEEEEETTTCCEEEEEECSSCEEEEE
T ss_pred ---EEEEEECCCCcE-----eEEEEecCCCceeEEEECCCCCEEEEecC---CceEEEEECCCCceeeeecCCCCceeEE
Confidence 999999976321 444444 447999999999999999998 99999999998887765 4557899999
Q ss_pred ECCCCCEEEEEEccceeccc--------------cEEEEEec-Cceeeee--cccceeeeEEecCCCCCCChhhHHHHH
Q 005140 563 WDPTGRYVATAVTSVHEMEN--------------GFNIWSFN-GKLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 563 ~spdg~~l~t~s~~~~~~d~--------------~v~iw~~~-g~~~~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
|+|+|+++++++. ++ .+++|++. +..+... |...|.+++|+|++++|++++.|+.|+
T Consensus 267 ~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~ 340 (369)
T 3zwl_B 267 ITPLKEFIILGGG-----QEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIR 340 (369)
T ss_dssp ECSSSSEEEEEEC-----CC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ecCCCceEEEeec-----CCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEE
Confidence 9999999999998 55 79999986 4444333 668999999999999999999998775
No 64
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=4.5e-28 Score=261.01 Aligned_cols=322 Identities=13% Similarity=0.171 Sum_probs=252.8
Q ss_pred EecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-CC-CeeEEEecCCCCEEEEEc
Q 005140 196 LWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPGEKYLVTYS 272 (712)
Q Consensus 196 ~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~~Spdg~~l~t~s 272 (712)
.|.. ........+.+|...+.. +++++|++||+++.++ |++|+.. +++.+..+. |. .|.+++|+ +.+|++++
T Consensus 102 ~w~~-~~~~~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~-~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~ 176 (445)
T 2ovr_B 102 NWRR-GELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAV-TGKCLRTLVGHTGGVWSSQMR--DNIIISGS 176 (445)
T ss_dssp HHHH-SCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETT-TCCEEEECCCCSSCEEEEEEE--TTEEEEEE
T ss_pred cccC-CCcceeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECC-CCcEEEEEcCCCCCEEEEEec--CCEEEEEe
Confidence 3544 234455678889876532 3666799999999999 8899999 777776663 44 49999997 67999999
Q ss_pred CCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCce
Q 005140 273 SHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT 351 (712)
Q Consensus 273 ~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~ 351 (712)
.| +.|++||+.+++.+..+.+|...+. ++.|+ ++++++++ |+.|++||+.+++
T Consensus 177 ~d----------g~i~vwd~~~~~~~~~~~~h~~~v~-------------~~~~~---~~~l~s~s~dg~i~~wd~~~~~ 230 (445)
T 2ovr_B 177 TD----------RTLKVWNAETGECIHTLYGHTSTVR-------------CMHLH---EKRVVSGSRDATLRVWDIETGQ 230 (445)
T ss_dssp TT----------SCEEEEETTTTEEEEEECCCSSCEE-------------EEEEE---TTEEEEEETTSEEEEEESSSCC
T ss_pred CC----------CeEEEEECCcCcEEEEECCCCCcEE-------------EEEec---CCEEEEEeCCCEEEEEECCCCc
Confidence 99 9999999999999999998887663 56664 46788888 9999999999988
Q ss_pred ecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccc
Q 005140 352 LIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRY 431 (712)
Q Consensus 352 ~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~ 431 (712)
.+.....|...|.+++| ++.+|++ ++.++.+++ |+..+.+.+.....+......+.| ++.++++++.++
T Consensus 231 ~~~~~~~~~~~v~~~~~--~~~~l~~-----~~~dg~i~i--wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~ 299 (445)
T 2ovr_B 231 CLHVLMGHVAAVRCVQY--DGRRVVS-----GAYDFMVKV--WDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDT 299 (445)
T ss_dssp EEEEEECCSSCEEEEEE--CSSCEEE-----EETTSCEEE--EEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTS
T ss_pred EEEEEcCCcccEEEEEE--CCCEEEE-----EcCCCEEEE--EECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCC
Confidence 87777778888999999 6788888 666666555 556555555555445555566666 889999999887
Q ss_pred ccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC
Q 005140 432 TKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK 511 (712)
Q Consensus 432 ~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~ 511 (712)
. +.+|++.... ....+.+|...+.++++ ++++|++++.|+ .|++||+.++. .+..+.
T Consensus 300 ~---------i~i~d~~~~~---~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg---~i~vwd~~~~~------~~~~~~ 356 (445)
T 2ovr_B 300 S---------IRVWDVETGN---CIHTLTGHQSLTSGMEL--KDNILVSGNADS---TVKIWDIKTGQ------CLQTLQ 356 (445)
T ss_dssp C---------EEEEETTTCC---EEEEECCCCSCEEEEEE--ETTEEEEEETTS---CEEEEETTTCC------EEEEEC
T ss_pred e---------EEEEECCCCC---EEEEEcCCcccEEEEEE--eCCEEEEEeCCC---eEEEEECCCCc------EEEEEc
Confidence 7 8899886543 22456688888888776 578999999999 99999997654 455554
Q ss_pred C-----CceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee-------ccccceeeEEECCCCCEEEEEEcccee
Q 005140 512 G-----KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-------AEHFMATDVEWDPTGRYVATAVTSVHE 579 (712)
Q Consensus 512 ~-----~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~-------~~~~~v~~~~~spdg~~l~t~s~~~~~ 579 (712)
. ..+.+++|+ +++|++++. ||.|++||+.+++.+.. .+...|++++|+|+|.+|++++.
T Consensus 357 ~~~~~~~~v~~~~~~--~~~l~s~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~---- 427 (445)
T 2ovr_B 357 GPNKHQSAVTCLQFN--KNFVITSSD---DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSR---- 427 (445)
T ss_dssp STTSCSSCEEEEEEC--SSEEEEEET---TSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECS----
T ss_pred cCCCCCCCEEEEEEC--CCEEEEEeC---CCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEccc----
Confidence 2 368888885 689999998 99999999998887654 34578999999999999999999
Q ss_pred cccc----EEEEEecCc
Q 005140 580 MENG----FNIWSFNGK 592 (712)
Q Consensus 580 ~d~~----v~iw~~~g~ 592 (712)
|+. +.|||+...
T Consensus 428 -dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 428 -NGTEETKLLVLDFDVD 443 (445)
T ss_dssp -SSSSCCEEEEEECCCC
T ss_pred -CCCCccEEEEEECCCC
Confidence 887 999998753
No 65
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8e-29 Score=255.29 Aligned_cols=271 Identities=12% Similarity=0.155 Sum_probs=198.1
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC--ceeeec-cC-CCcccccCCCCCcCCCCcCeEEecCC
Q 005140 254 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG--KVMRDF-KG-SADEFAVGGTGGVAGVSWPVFRWGGG 329 (712)
Q Consensus 254 ~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g--~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~s~~ 329 (712)
..|.+++|+|+ +||+++.| ++|++||+.++ ..+..+ .+ |...+. +++|+|
T Consensus 15 ~~v~~~~~s~~--~las~~~D----------~~i~lw~~~~~~~~~~~~~~~~~h~~~v~-------------~v~~sp- 68 (330)
T 2hes_X 15 EKIWSFDFSQG--ILATGSTD----------RKIKLVSVKYDDFTLIDVLDETAHKKAIR-------------SVAWRP- 68 (330)
T ss_dssp SCEEEEEEETT--EEEEEESS----------SCEEEEECSSSCCEEEEEECTTCCCSCEE-------------EEEECT-
T ss_pred CceeeeccCCC--EEEEEcCC----------CEEEEEEecCCCeEEEEEEecCCccCCEE-------------EEEECC-
Confidence 35999999998 99999999 99999999775 344555 33 655553 799999
Q ss_pred CCCEEEEec-CCeEEEEEcCCc-------eecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccc
Q 005140 330 KDKYFAKLG-KNMISVYETESF-------TLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE 401 (712)
Q Consensus 330 dg~~la~~~-d~~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~ 401 (712)
++++|++++ |++|+||++... ..+.....|...|.+++|+|++++|++ ++.|+.+++|...
T Consensus 69 ~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las-----~s~D~~v~iwd~~------ 137 (330)
T 2hes_X 69 HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLAT-----CSRDKSVWIWETD------ 137 (330)
T ss_dssp TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEE-----EETTSCEEEEECC------
T ss_pred CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEE-----EeCCCEEEEEecc------
Confidence 999999999 999999998532 223333445666777777777777777 5566665554331
Q ss_pred eeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcc-eeEEEecCCCCceEEEEEeeCCCEEEE
Q 005140 402 LRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIP-IEVLELDNKNDKIIAFAWEPKGHRFAV 480 (712)
Q Consensus 402 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~l~~h~~~v~~~~~sp~g~~l~~ 480 (712)
..+.. .....+.+|...|.+++|+|++.+|++
T Consensus 138 -----------------------------------------------~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s 170 (330)
T 2hes_X 138 -----------------------------------------------ESGEEYECISVLQEHSQDVKHVIWHPSEALLAS 170 (330)
T ss_dssp -----------------------------------------------TTCCCCEEEEEECCCSSCEEEEEECSSSSEEEE
T ss_pred -----------------------------------------------CCCCCeEEEEEeccCCCceEEEEECCCCCEEEE
Confidence 11000 011235578999999999999999999
Q ss_pred EEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccC--CCeEEEEeccCCCceEEEEECCcc--------e
Q 005140 481 IHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPS--GRFIVLAGLKGFNGQLEFYNVDEL--------E 548 (712)
Q Consensus 481 ~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spd--g~~l~~~~~~~~dg~v~iwd~~~~--------~ 548 (712)
++.|+ .|++|++.++. ...+..+.+| .|.+++|+|+ +.+|++++. |+.|++||+.++ .
T Consensus 171 ~s~D~---~i~iW~~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~---D~~v~iw~~~~~~~~~~~~~~ 240 (330)
T 2hes_X 171 SSYDD---TVRIWKDYDDD----WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD---DSTVRVWKYMGDDEDDQQEWV 240 (330)
T ss_dssp EETTS---CEEEEEEETTE----EEEEEEECCCSSCEEEEEECCSSSSCEEEEEET---TSCEEEEEEEEECTTSCEEEE
T ss_pred EcCCC---eEEEEECCCCC----eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC---CCeEEEEEecCCCccccceeE
Confidence 99999 99999986543 2256666655 6899999999 778999998 999999998754 2
Q ss_pred eeee---ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCc---eeee---eccc-ceeeeEEec--CCCCCCC
Q 005140 549 TMAT---AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK---LLYR---TLKD-HFFQFLWRP--RPPSFLT 616 (712)
Q Consensus 549 ~~~~---~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~---~~~~---~~~~-~i~~~~w~p--~~~~l~s 616 (712)
.... .|...|.+++|++++ +|++++. |+.|+||+.... .+.. .|.. .+..++|+| ++..|++
T Consensus 241 ~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~-----dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las 314 (330)
T 2hes_X 241 CEAILPDVHKRQVYNVAWGFNG-LIASVGA-----DGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILAT 314 (330)
T ss_dssp EEEECCSCCSSCEEEEEECTTS-CEEEEET-----TSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEE
T ss_pred EeeecccccccceEEEEEcCCC-EEEEEeC-----CCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEE
Confidence 2222 367889999999765 7999999 999999998743 2222 2444 799999999 6889999
Q ss_pred hhhHHHHH
Q 005140 617 PEKEEEIA 624 (712)
Q Consensus 617 ~~~d~~i~ 624 (712)
++.|+.|+
T Consensus 315 ~s~Dg~v~ 322 (330)
T 2hes_X 315 GGDDGIVN 322 (330)
T ss_dssp EETTSEEE
T ss_pred ecCCCcEE
Confidence 99988765
No 66
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.7e-28 Score=248.07 Aligned_cols=277 Identities=14% Similarity=0.127 Sum_probs=214.3
Q ss_pred CCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee-cCC-CeeEEEecCCCCEEEEEcCCCCCCC
Q 005140 203 LKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY-AHP-QVKLIDFSPGEKYLVTYSSHEPSNP 279 (712)
Q Consensus 203 ~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~-~~~-~v~~i~~Spdg~~l~t~s~d~~~~~ 279 (712)
.+....+.+|...|++++| |+|.+||+++.++ |+||+.. +......+ .|. .|.+++|+|++++|++++.+
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----- 80 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKD-DQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKD----- 80 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEES-SSEEEEEEEECSSCEEEEEEETTTTEEEEEETT-----
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECC-CCEEEEEeecCCccEEEEEECCCCCEEEEecCC-----
Confidence 3455678899999999999 9999999999999 8899998 66555444 333 49999999999999999999
Q ss_pred cCCCccEEEEEEccCC---ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccc
Q 005140 280 RDANRVVINIFDVRTG---KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDK 355 (712)
Q Consensus 280 ~~~~~~~I~iwd~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~ 355 (712)
+.|++|++... +.+..+.+|...+. ++.| +++++++++ ++.|++|+ .+..+..
T Consensus 81 -----g~i~~~~~~~~~~~~~~~~~~~~~~~i~-------------~~~~---~~~~l~~~~~d~~i~~~d--~~~~~~~ 137 (313)
T 3odt_A 81 -----TMINGVPLFATSGEDPLYTLIGHQGNVC-------------SLSF---QDGVVISGSWDKTAKVWK--EGSLVYN 137 (313)
T ss_dssp -----SCEEEEETTCCTTSCC-CEECCCSSCEE-------------EEEE---ETTEEEEEETTSEEEEEE--TTEEEEE
T ss_pred -----CeEEEEEeeecCCCCcccchhhcccCEE-------------EEEe---cCCEEEEEeCCCCEEEEc--CCcEEEe
Confidence 99999998654 55677777766652 5666 456888888 99999999 4455544
Q ss_pred ccccccCeeeEEECC-CCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccc
Q 005140 356 KSLKVENVMDFSWSP-TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKT 434 (712)
Q Consensus 356 ~~~~~~~v~~~~~sp-~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~ 434 (712)
...+...+.++.|+| ++..+++ ++.++.+++|. ..
T Consensus 138 ~~~~~~~v~~~~~~~~~~~~l~~-----~~~d~~i~i~d--~~------------------------------------- 173 (313)
T 3odt_A 138 LQAHNASVWDAKVVSFSENKFLT-----ASADKTIKLWQ--ND------------------------------------- 173 (313)
T ss_dssp EECCSSCEEEEEEEETTTTEEEE-----EETTSCEEEEE--TT-------------------------------------
T ss_pred cccCCCceeEEEEccCCCCEEEE-----EECCCCEEEEe--cC-------------------------------------
Confidence 555667788888877 7777776 55555555442 10
Q ss_pred cccccccEEEEEEecCCcceeEEEecC-CCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--
Q 005140 435 KKSTYTGFELFRIKERDIPIEVLELDN-KNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-- 511 (712)
Q Consensus 435 ~~~~~~~~~l~~l~~~~~~~~~~~l~~-h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-- 511 (712)
. ....+.. |...+.+++|+|++. +++++.++ .|++||++++. .+..+.
T Consensus 174 -----------------~--~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg---~i~i~d~~~~~------~~~~~~~~ 224 (313)
T 3odt_A 174 -----------------K--VIKTFSGIHNDVVRHLAVVDDGH-FISCSNDG---LIKLVDMHTGD------VLRTYEGH 224 (313)
T ss_dssp -----------------E--EEEEECSSCSSCEEEEEEEETTE-EEEEETTS---EEEEEETTTCC------EEEEEECC
T ss_pred -----------------c--eEEEEeccCcccEEEEEEcCCCe-EEEccCCC---eEEEEECCchh------hhhhhhcC
Confidence 0 0011223 688999999999998 88999999 99999997654 445554
Q ss_pred CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEe
Q 005140 512 GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSF 589 (712)
Q Consensus 512 ~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~ 589 (712)
...+++++|+|+| .|++++. ||.|++||+.+++.+.. .+...+++++|+|+|+ +++++. |+.+++|++
T Consensus 225 ~~~i~~~~~~~~~-~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~-----dg~i~iw~~ 294 (313)
T 3odt_A 225 ESFVYCIKLLPNG-DIVSCGE---DRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSS-----DNLVRIFSQ 294 (313)
T ss_dssp SSCEEEEEECTTS-CEEEEET---TSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEET-----TSCEEEEES
T ss_pred CceEEEEEEecCC-CEEEEec---CCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeC-----CCcEEEEeC
Confidence 4479999999999 5778887 99999999998887664 5667899999999999 556888 899999998
Q ss_pred cCc
Q 005140 590 NGK 592 (712)
Q Consensus 590 ~g~ 592 (712)
...
T Consensus 295 ~~~ 297 (313)
T 3odt_A 295 EKS 297 (313)
T ss_dssp CGG
T ss_pred CCC
Confidence 754
No 67
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.3e-31 Score=276.75 Aligned_cols=316 Identities=10% Similarity=0.094 Sum_probs=216.1
Q ss_pred cccceEEEcCCCcEEEEEecCceEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc
Q 005140 214 WTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR 293 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~ 293 (712)
.-|.+++|||||+++|+++.|+... ++. ..+.+ ..|...|.+++|||+| .+ +.+.+|+.
T Consensus 16 ~~v~sv~~SpDG~~iASas~D~TV~-d~~-~~~~l-~gh~~~v~~V~FsPdg-------~~----------~~~~~~~~- 74 (588)
T 2j04_A 16 DWKNNLTWARDGTLYLTTFPDISIG-QPK-YAKDI-NCNSKNLFHVKEFPLE-------FE----------NKLDFELA- 74 (588)
T ss_dssp SSSCCEEECTTSCEEEECSSSEEEE-EEC-CCSCC-SSBGGGTEEEEEECCC-------CC----------CTTTTSCC-
T ss_pred ccEEEEEECCCCCEEEEEcCCceee-ccc-cccee-cCCCccEEEEEECCCC-------Cc----------ceEEEEeC-
Confidence 5678999999999999999999433 766 45444 3333459999999999 34 44445543
Q ss_pred CCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccccccccc-----CeeeEE
Q 005140 294 TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVE-----NVMDFS 367 (712)
Q Consensus 294 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~-----~v~~~~ 367 (712)
.+..+..+. |...+. +++||| +|++||+++ ||.|++|+..+ ++.... |.. .|.+++
T Consensus 75 ~~~~~~~~~-~~~~V~-------------~vawSP-dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~sva 136 (588)
T 2j04_A 75 QQNGLLNSQ-PVCYPR-------------VCKPSP-IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFE 136 (588)
T ss_dssp CSSCSSTTS-CSCCEE-------------EEEECS-SSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEE
T ss_pred CCceEeecC-CCCcEE-------------EEEECC-CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEE
Confidence 222333332 333332 799999 999999999 99999999654 333333 332 599999
Q ss_pred ECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc-----ceeee----eeeeecceeEEECcCCCEEEEEEcccccccccc
Q 005140 368 WSPTDPIISLFVPELGGGNQPARVSLVQIPSKE-----ELRQK----NLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKST 438 (712)
Q Consensus 368 ~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~----~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~ 438 (712)
|||+|++|++ ++.|+.++||........ .+... ..+.....+++|+|+| +++++.+++
T Consensus 137 fSPDG~~LAs-----gs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~t------ 203 (588)
T 2j04_A 137 WNPIESSIVV-----GNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNS------ 203 (588)
T ss_dssp ECSSSSCEEE-----EETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCC------
T ss_pred EcCCCCEEEE-----EcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCe------
Confidence 9999999999 777877776665443210 12222 1133467788999999 777777777
Q ss_pred cccEEEEEEecCCcceeEEEe-cCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEe-CCCcee
Q 005140 439 YTGFELFRIKERDIPIEVLEL-DNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL-KGKQAN 516 (712)
Q Consensus 439 ~~~~~l~~l~~~~~~~~~~~l-~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~-~~~~v~ 516 (712)
+++|++..........++ .+|...|.+++|+ |++||+++ ++ .|++|++.++.. ....+ +...+.
T Consensus 204 ---VrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~---tIkLWd~~~~~~-----~~~~~gh~~~V~ 269 (588)
T 2j04_A 204 ---VFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PG---YVHKIDLKNYSI-----SSLKTGSLENFH 269 (588)
T ss_dssp ---EEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SS---EEEEEETTTTEE-----EEEECSCCSCCC
T ss_pred ---EEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CC---eEEEEECCCCeE-----EEEEcCCCceEE
Confidence 899998765532112334 3788999999999 68888886 56 999999976442 12232 233689
Q ss_pred EEEE--ccCCCeEEEEeccCCCceEEEEECCcc-----------------------eeeee-ccccceeeEEECCCCCEE
Q 005140 517 ALFW--SPSGRFIVLAGLKGFNGQLEFYNVDEL-----------------------ETMAT-AEHFMATDVEWDPTGRYV 570 (712)
Q Consensus 517 ~l~~--spdg~~l~~~~~~~~dg~v~iwd~~~~-----------------------~~~~~-~~~~~v~~~~~spdg~~l 570 (712)
.++| +|+|..|+++.. +|+ ++|..+.. ..+.. .+...|.+++|||||+.+
T Consensus 270 ~va~~~s~d~~~La~a~e---dG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~l 345 (588)
T 2j04_A 270 IIPLNHEKESTILLMSNK---TSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSI 345 (588)
T ss_dssp EEEETTCSSCEEEEECSS---CEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEE
T ss_pred EEEeeeCCCCCEEEEEcC---CCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCCEE
Confidence 9999 999999999998 899 88887421 11111 112457889999999999
Q ss_pred EEEEccceeccccEEEEEecCceeeeecccceeeeEEecCC
Q 005140 571 ATAVTSVHEMENGFNIWSFNGKLLYRTLKDHFFQFLWRPRP 611 (712)
Q Consensus 571 ~t~s~~~~~~d~~v~iw~~~g~~~~~~~~~~i~~~~w~p~~ 611 (712)
|+++. | -....-++........+.|-|-.
T Consensus 346 A~~~~----------i--~~~~~~y~i~s~~~~~i~f~pL~ 374 (588)
T 2j04_A 346 AIVYD----------M--ERVAFKYKIASEQSFNIMFAPLY 374 (588)
T ss_dssp EEEEE----------E--ECSSCCCCCSSSCCEEEEEEESS
T ss_pred EEEEe----------c--cCceeEEeeccceEEEEEEEEcc
Confidence 88887 2 22223344455666777777743
No 68
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=2e-28 Score=259.84 Aligned_cols=275 Identities=17% Similarity=0.299 Sum_probs=211.1
Q ss_pred cCCCcc--cceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec--CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCC
Q 005140 210 KRSYWT--ESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA--HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDAN 283 (712)
Q Consensus 210 ~~~~~~--v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~--~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~ 283 (712)
.+|... +.+++|++ ..+++++.++ |+||+.. ++.....+. |. .|.+++|+|+|++|++++.+
T Consensus 88 ~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d--------- 155 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNAD-SGSVSALAETDESTYVASVKWSHDGSFLSVGLGN--------- 155 (401)
T ss_dssp TTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETT-TCCEEEEEECCTTCCEEEEEECTTSSEEEEEETT---------
T ss_pred CCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCC-CCcEeEeeecCCCCCEEEEEECCCCCEEEEECCC---------
Confidence 355544 45677775 4466666777 8999998 666555443 34 49999999999999999999
Q ss_pred ccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCC-ceeccccccccc
Q 005140 284 RVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETES-FTLIDKKSLKVE 361 (712)
Q Consensus 284 ~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~-~~~~~~~~~~~~ 361 (712)
+.|++||+.+++.++.+.+|...+. +++|++ .+|++++ ++.|.+|++.. ...+.....|..
T Consensus 156 -g~i~iwd~~~~~~~~~~~~~~~~v~-------------~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 218 (401)
T 4aez_A 156 -GLVDIYDVESQTKLRTMAGHQARVG-------------CLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSS 218 (401)
T ss_dssp -SCEEEEETTTCCEEEEECCCSSCEE-------------EEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSS
T ss_pred -CeEEEEECcCCeEEEEecCCCCceE-------------EEEECC---CEEEEEcCCCCEEEEecccCcceeeEEcCCCC
Confidence 9999999999999999998877763 677744 6888888 99999999984 444444556777
Q ss_pred CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccccccc
Q 005140 362 NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTG 441 (712)
Q Consensus 362 ~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~ 441 (712)
.|.+++|+|++++|++ ++.++.+++| ++.+..
T Consensus 219 ~v~~~~~~~~~~~l~s-----~~~d~~v~iw--d~~~~~----------------------------------------- 250 (401)
T 4aez_A 219 EVCGLAWRSDGLQLAS-----GGNDNVVQIW--DARSSI----------------------------------------- 250 (401)
T ss_dssp CEEEEEECTTSSEEEE-----EETTSCEEEE--ETTCSS-----------------------------------------
T ss_pred CeeEEEEcCCCCEEEE-----EeCCCeEEEc--cCCCCC-----------------------------------------
Confidence 8999999999988888 5566665544 322110
Q ss_pred EEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEE---cCCCCCeEEEEEeecccccCceeEEEEeC-CCceeE
Q 005140 442 FELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIH---GDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANA 517 (712)
Q Consensus 442 ~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~---~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~ 517 (712)
....+.+|...|.+++|+|++..+++.+ .|+ .|++||+.++. .+..+. ...+.+
T Consensus 251 -------------~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~---~i~i~d~~~~~------~~~~~~~~~~v~~ 308 (401)
T 4aez_A 251 -------------PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDK---QIHFWNAATGA------RVNTVDAGSQVTS 308 (401)
T ss_dssp -------------EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTC---EEEEEETTTCC------EEEEEECSSCEEE
T ss_pred -------------ccEEecCCcceEEEEEECCCCCCEEEEecCCCCC---EEEEEECCCCC------EEEEEeCCCcEEE
Confidence 0122346788999999999876555544 377 99999997654 444444 447999
Q ss_pred EEEccCCCeEEEEe--ccCCCceEEEEECCcceeee----eccccceeeEEECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 518 LFWSPSGRFIVLAG--LKGFNGQLEFYNVDELETMA----TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 518 l~~spdg~~l~~~~--~~~~dg~v~iwd~~~~~~~~----~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
++|+|+|+++++++ . +|.|++|++.++.... ..|...|++++|+|+|++|++++. |+.+++|++..
T Consensus 309 ~~~s~~~~~l~~~~g~~---dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~-----dg~i~iw~~~~ 380 (401)
T 4aez_A 309 LIWSPHSKEIMSTHGFP---DNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAAS-----DENLKFWRVYD 380 (401)
T ss_dssp EEECSSSSEEEEEECTT---TCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECT-----TSEEEEEECCC
T ss_pred EEECCCCCeEEEEeecC---CCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeC-----CCcEEEEECCC
Confidence 99999999999964 5 9999999999755443 257789999999999999999999 99999999874
No 69
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=6.1e-28 Score=247.15 Aligned_cols=280 Identities=15% Similarity=0.236 Sum_probs=212.1
Q ss_pred ccceEEEcCCCcEEEEEecCceEEeecccCcceeeee---cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEE
Q 005140 215 TESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRY---AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIF 290 (712)
Q Consensus 215 ~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~---~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iw 290 (712)
..++|+||+++ +||+|....|+|||.. +++.+..+ .|. .|.+++|+|+|++||+|+.| ++|++|
T Consensus 27 y~~~l~WS~~~-~lAvg~D~tV~iWd~~-tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~D----------g~v~iw 94 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVALDNSVYLWSAS-SGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS----------AEVQLW 94 (318)
T ss_dssp TCBCEEECTTS-EEEEEETTEEEEEETT-TCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT----------SEEEEE
T ss_pred cceEEEECCCC-EEEEEeCCEEEEEECC-CCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECC----------CcEEEe
Confidence 35789999987 8888875559999999 77766554 244 39999999999999999999 999999
Q ss_pred EccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCce-ecccccccccCeeeEEE
Q 005140 291 DVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT-LIDKKSLKVENVMDFSW 368 (712)
Q Consensus 291 d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~ 368 (712)
|+.+++.++.+.+|...+ ..+++ ++.++++++ ++.+.+|+..... .+.....|...+..+.+
T Consensus 95 ~~~~~~~~~~~~~h~~~~---------------~~~~~-~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (318)
T 4ggc_A 95 DVQQQKRLRNMTSHSARV---------------GSLSW-NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW 158 (318)
T ss_dssp ETTTTEEEEEEECCSSCE---------------EEEEE-ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred ecCCceeEEEecCccceE---------------EEeec-CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEE
Confidence 999999999999987664 56777 888999998 9999999987553 33334456677888899
Q ss_pred CCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEe
Q 005140 369 SPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIK 448 (712)
Q Consensus 369 sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~ 448 (712)
++++++|++ ++.++.+++|. +.+.+...
T Consensus 159 ~~~~~~l~s-----~~~d~~i~iwd--~~~~~~~~--------------------------------------------- 186 (318)
T 4ggc_A 159 APDGRHLAS-----GGNDNLVNVWP--SAPGEGGW--------------------------------------------- 186 (318)
T ss_dssp CTTSSEEEE-----EETTSCEEEEE--SSCBTTBS---------------------------------------------
T ss_pred cCCCCEEEE-----EecCcceeEEE--CCCCcccc---------------------------------------------
Confidence 999988888 66677666553 22211000
Q ss_pred cCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEE
Q 005140 449 ERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIV 528 (712)
Q Consensus 449 ~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~ 528 (712)
........|.+.|.+++++|++..++..........|++|+...... .........+..+.|+|++..++
T Consensus 187 -----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~ 256 (318)
T 4ggc_A 187 -----VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC-----LSAVDAHSQVCSILWSPHYKELI 256 (318)
T ss_dssp -----CCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE-----EEEEECSSCEEEEEEETTTTEEE
T ss_pred -----cceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc-----cccccceeeeeeeeecccccceE
Confidence 00012234578899999999776554332221122899999866442 22233355789999999999998
Q ss_pred EEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 529 LAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 529 ~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
+++.. .|+.|++||+.+++.+.+ +|...|++++|+|+|++|++++. |+.|+||++.
T Consensus 257 ~~sg~-~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~-----D~~v~iWd~~ 314 (318)
T 4ggc_A 257 SGHGF-AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA-----DETLRLWRCF 314 (318)
T ss_dssp EEECT-TTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET-----TTEEEEECCS
T ss_pred EEEEc-CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEec-----CCeEEEEECC
Confidence 87622 289999999999988875 67799999999999999999999 9999999975
No 70
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=7.4e-29 Score=260.13 Aligned_cols=284 Identities=11% Similarity=0.137 Sum_probs=221.6
Q ss_pred eeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc--eeeeccCCCcccccCCCCCcCCCCcCeEE
Q 005140 248 LMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK--VMRDFKGSADEFAVGGTGGVAGVSWPVFR 325 (712)
Q Consensus 248 ~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (712)
+..++...|.+++|+|+|++|++++.+ +.|++||+.+++ .+..+.+|...+. +++
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d----------~~v~i~~~~~~~~~~~~~~~~h~~~v~-------------~~~ 59 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNN----------HEVHIYEKSGNKWVQVHELKEHNGQVT-------------GVD 59 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSS----------SEEEEEEEETTEEEEEEEEECCSSCEE-------------EEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCC----------CEEEEEeCCCCcEEeeeeecCCCCccc-------------EEE
Confidence 344555669999999999999999999 999999998887 8888988877664 799
Q ss_pred ecCCCCCEEEEec-CCeEEEEEcCCceecccc--cccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccce
Q 005140 326 WGGGKDKYFAKLG-KNMISVYETESFTLIDKK--SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEEL 402 (712)
Q Consensus 326 ~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~--~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~ 402 (712)
|+| ++++|++++ |+.|++|++.+++..... ..+...|.+++|+|++++|++ ++.++.+++|.++.....
T Consensus 60 ~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-----~~~d~~v~i~d~~~~~~~-- 131 (372)
T 1k8k_C 60 WAP-DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAV-----GSGSRVISICYFEQENDW-- 131 (372)
T ss_dssp EET-TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEE-----EETTSSEEEEEEETTTTE--
T ss_pred EeC-CCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEE-----EeCCCEEEEEEecCCCcc--
Confidence 999 999999998 999999999877644332 235567899999999988888 666777666655432100
Q ss_pred eeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEE
Q 005140 403 RQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIH 482 (712)
Q Consensus 403 ~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~ 482 (712)
. .......+|...|.+++|+|++++|++++
T Consensus 132 ----------------------------------------~----------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 161 (372)
T 1k8k_C 132 ----------------------------------------W----------VCKHIKKPIRSTVLSLDWHPNSVLLAAGS 161 (372)
T ss_dssp ----------------------------------------E----------EEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred ----------------------------------------e----------eeeeeecccCCCeeEEEEcCCCCEEEEEc
Confidence 0 00011236788999999999999999999
Q ss_pred cCCCCCeEEEEEeeccccc------------CceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcce
Q 005140 483 GDSPRPDISFYSMRTAQHA------------GRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELE 548 (712)
Q Consensus 483 ~d~~~~~v~i~d~~~~~~~------------~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~ 548 (712)
.++ .|++||+...... .....+..+..+ .+.+++|+|+|++|++++. ||.|++||+.+++
T Consensus 162 ~dg---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~ 235 (372)
T 1k8k_C 162 CDF---KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH---DSTVCLADADKKM 235 (372)
T ss_dssp TTS---CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET---TTEEEEEEGGGTT
T ss_pred CCC---CEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeC---CCEEEEEECCCCc
Confidence 999 9999997421100 011255666543 6899999999999999998 9999999999888
Q ss_pred eeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecC--c--------------------------------
Q 005140 549 TMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG--K-------------------------------- 592 (712)
Q Consensus 549 ~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g--~-------------------------------- 592 (712)
.+.. .|...+++++|+|+|++|+++ . |+.+++|++.. .
T Consensus 236 ~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-----d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (372)
T 1k8k_C 236 AVATLASETLPLLAVTFITESSLVAAG-H-----DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKA 309 (372)
T ss_dssp EEEEEECSSCCEEEEEEEETTEEEEEE-T-----TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC
T ss_pred eeEEEccCCCCeEEEEEecCCCEEEEE-e-----CCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccccc
Confidence 7765 456789999999999988887 6 89999999876 2
Q ss_pred ----------eeeeecccceeeeEEe-cCC---CCCCChhhHHHHH
Q 005140 593 ----------LLYRTLKDHFFQFLWR-PRP---PSFLTPEKEEEIA 624 (712)
Q Consensus 593 ----------~~~~~~~~~i~~~~w~-p~~---~~l~s~~~d~~i~ 624 (712)
.+...|...|++++|. +++ .+|+|++.|+.|+
T Consensus 310 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~ 355 (372)
T 1k8k_C 310 SSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMS 355 (372)
T ss_dssp ---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEE
T ss_pred ccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceE
Confidence 2223467899999977 555 8999999998876
No 71
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.8e-29 Score=268.72 Aligned_cols=299 Identities=10% Similarity=0.074 Sum_probs=218.8
Q ss_pred EecCCCCCCCcccc-cCCCcccceEEEcC-CCcEEEEEecCc-eEEeecccC------cceeeeecCC-CeeEEEecCCC
Q 005140 196 LWNDARHLKPEPVY-KRSYWTESFVQWSP-LGTYLATVHRQG-AAVWGGANT------FNRLMRYAHP-QVKLIDFSPGE 265 (712)
Q Consensus 196 ~w~~~~~~~~~~~~-~~~~~~v~~v~~Sp-dg~~lat~~~~~-i~iw~~~~~------~~~~~~~~~~-~v~~i~~Spdg 265 (712)
.|+. .++....+ .+|...|++++|+| +|++||+++.|+ |+||+.. + ......+.|. .|.+++|+|++
T Consensus 47 ~w~~--~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 123 (437)
T 3gre_A 47 MGNL--RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLK-EIIVGEVYSSSLTYDCSSTVTQITMIPNF 123 (437)
T ss_dssp GGGC--CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHH-HHHTTCCCSCSEEEECSSCEEEEEECTTS
T ss_pred cccc--cceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECc-ccccCcccceeeeccCCCCEEEEEEeCCC
Confidence 4775 56667777 88999999999999 999999999999 8899987 4 2234444555 49999999999
Q ss_pred CEEEEEcCCCCCCCcCCCccEEEEEEcc---CCceeeeccCCCcccccCCC-CCcCCCCcCeEE--ecCCCCCEEEEec-
Q 005140 266 KYLVTYSSHEPSNPRDANRVVINIFDVR---TGKVMRDFKGSADEFAVGGT-GGVAGVSWPVFR--WGGGKDKYFAKLG- 338 (712)
Q Consensus 266 ~~l~t~s~d~~~~~~~~~~~~I~iwd~~---~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~s~~dg~~la~~~- 338 (712)
++|++++.| +.|++||+. +++.++.+..+......... +....+. ++. +++ ++.+|++++
T Consensus 124 ~~l~s~s~d----------g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~-~~~~l~~~~~ 190 (437)
T 3gre_A 124 DAFAVSSKD----------GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAV--RMRAFVNE-EKSLLVALTN 190 (437)
T ss_dssp SEEEEEETT----------SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEE--EEEEEECS-SCEEEEEEET
T ss_pred CEEEEEeCC----------CEEEEEEeccccCCceeeccccceeEEEEccCcccccCce--EEEEEEcC-CCCEEEEEeC
Confidence 999999999 999999994 66666555433111000000 0000000 233 778 899999999
Q ss_pred CCeEEEEEcCCceecccccc--cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEE
Q 005140 339 KNMISVYETESFTLIDKKSL--KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMY 416 (712)
Q Consensus 339 d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (712)
|+.|++||+.+++.+..... |...|.+++|+|++.+|++ ++.++.+++|. +...+.+
T Consensus 191 d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s-----~~~dg~i~iwd--~~~~~~~-------------- 249 (437)
T 3gre_A 191 LSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLIL-----GTTRGIIDIWD--IRFNVLI-------------- 249 (437)
T ss_dssp TSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEE-----EETTSCEEEEE--TTTTEEE--------------
T ss_pred CCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEE-----EcCCCeEEEEE--cCCccEE--------------
Confidence 99999999998887766655 6778999999999999998 66676655543 2221110
Q ss_pred ECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee----CCCEEEEEEcCCCCCeEEE
Q 005140 417 WQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP----KGHRFAVIHGDSPRPDISF 492 (712)
Q Consensus 417 ~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp----~g~~l~~~~~d~~~~~v~i 492 (712)
..+.+ +|...|.+++|+| ++.+|++++.|+ .|++
T Consensus 250 --------------------------------------~~~~~-~~~~~v~~~~~~~~~s~~~~~l~s~~~dg---~i~i 287 (437)
T 3gre_A 250 --------------------------------------RSWSF-GDHAPITHVEVCQFYGKNSVIVVGGSSKT---FLTI 287 (437)
T ss_dssp --------------------------------------EEEBC-TTCEEEEEEEECTTTCTTEEEEEEESTTE---EEEE
T ss_pred --------------------------------------EEEec-CCCCceEEEEeccccCCCccEEEEEcCCC---cEEE
Confidence 00111 4566788886654 677999999999 9999
Q ss_pred EEeecccccCceeEEEEeC----------------------------CCceeEEEEccCCCeEEEEeccCCCceEEEEEC
Q 005140 493 YSMRTAQHAGRVSKLTTLK----------------------------GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNV 544 (712)
Q Consensus 493 ~d~~~~~~~~~~~~~~~~~----------------------------~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~ 544 (712)
||+.++. .+..+. ...+++++|+ ++++|++++. ||.|++||+
T Consensus 288 wd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~---d~~i~~wd~ 357 (437)
T 3gre_A 288 WNFVKGH------CQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEA---TSSIVMFSL 357 (437)
T ss_dssp EETTTTE------EEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGG---GTEEEEEET
T ss_pred EEcCCCc------EEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCC---CCeEEEEEC
Confidence 9997654 222221 1247889999 7899999998 999999999
Q ss_pred Ccceeeee--c-------------------------------------cccceeeEEECCC--CCEEEEEEccceecccc
Q 005140 545 DELETMAT--A-------------------------------------EHFMATDVEWDPT--GRYVATAVTSVHEMENG 583 (712)
Q Consensus 545 ~~~~~~~~--~-------------------------------------~~~~v~~~~~spd--g~~l~t~s~~~~~~d~~ 583 (712)
.+++.+.. . |...|++++|+++ +.+|++++. ||.
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~-----dG~ 432 (437)
T 3gre_A 358 NELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDN-----SGL 432 (437)
T ss_dssp TCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEET-----TSC
T ss_pred CCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcC-----Cce
Confidence 87664432 1 6788999999998 789999999 999
Q ss_pred EEEEE
Q 005140 584 FNIWS 588 (712)
Q Consensus 584 v~iw~ 588 (712)
|+||+
T Consensus 433 I~iw~ 437 (437)
T 3gre_A 433 IGIFQ 437 (437)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99995
No 72
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=2.2e-28 Score=263.45 Aligned_cols=290 Identities=11% Similarity=0.162 Sum_probs=205.4
Q ss_pred CCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcc-----------eeeee-cC-------------CCeeEEEecCC
Q 005140 211 RSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN-----------RLMRY-AH-------------PQVKLIDFSPG 264 (712)
Q Consensus 211 ~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~-----------~~~~~-~~-------------~~v~~i~~Spd 264 (712)
.|...|++++|||+|++||+|+.++ |+||+.. +.. .+..+ .| ..|.+++|+|+
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~-~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQE-QENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEEC-C-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEec-CCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 4568999999999999999999999 8899988 444 23333 34 44999999999
Q ss_pred C--CEEEEEcCCCCCCCcCCCccEEEEEEccCCceee---------------------------------------e-cc
Q 005140 265 E--KYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMR---------------------------------------D-FK 302 (712)
Q Consensus 265 g--~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~---------------------------------------~-~~ 302 (712)
+ .+|++++.| +.|++||+.++.... . ..
T Consensus 105 ~~~~~l~s~s~d----------~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (447)
T 3dw8_B 105 KNAAQFLLSTND----------KTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFAN 174 (447)
T ss_dssp CSSSEEEEEECS----------SCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECS
T ss_pred CCcceEEEeCCC----------CeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEecc
Confidence 8 899999999 999999997654321 1 23
Q ss_pred CCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCC-ceecc-------cccccccCeeeEEECCCC-C
Q 005140 303 GSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETES-FTLID-------KKSLKVENVMDFSWSPTD-P 373 (712)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~-~~~~~-------~~~~~~~~v~~~~~sp~~-~ 373 (712)
+|...+. +++|+| ++++|+++.|+.|++||+.+ ...+. ....|...|.+++|+|++ .
T Consensus 175 ~h~~~v~-------------~~~~~~-~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 240 (447)
T 3dw8_B 175 AHTYHIN-------------SISINS-DYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN 240 (447)
T ss_dssp CCSSCCC-------------EEEECT-TSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTT
T ss_pred CCCcceE-------------EEEEcC-CCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCc
Confidence 3443332 799999 99999998899999999984 33332 233566679999999998 8
Q ss_pred eEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcc
Q 005140 374 IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIP 453 (712)
Q Consensus 374 ~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 453 (712)
+|++ ++.++.+++| ++.+.+...... . .+.... .+
T Consensus 241 ~l~s-----~~~dg~i~iw--d~~~~~~~~~~~------~--~~~~~~------------------------------~~ 275 (447)
T 3dw8_B 241 TFVY-----SSSKGTIRLC--DMRASALCDRHS------K--LFEEPE------------------------------DP 275 (447)
T ss_dssp EEEE-----EETTSCEEEE--ETTTCSSSCTTC------E--EECCC---------------------------------
T ss_pred EEEE-----EeCCCeEEEE--ECcCCcccccee------e--EeccCC------------------------------Cc
Confidence 8888 6677766655 433322100000 0 000000 00
Q ss_pred eeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeec-ccccCceeEEEEeCCCc-----------------e
Q 005140 454 IEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRT-AQHAGRVSKLTTLKGKQ-----------------A 515 (712)
Q Consensus 454 ~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~-~~~~~~~~~~~~~~~~~-----------------v 515 (712)
.....+.+|...|.+++|+|+|++|++++. + .|++||++. +. .+..+..+. +
T Consensus 276 ~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~---~v~iwd~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~i~~~ 345 (447)
T 3dw8_B 276 SNRSFFSEIISSISDVKFSHSGRYMMTRDY-L---SVKVWDLNMENR------PVETYQVHEYLRSKLCSLYENDCIFDK 345 (447)
T ss_dssp --CCHHHHHTTCEEEEEECTTSSEEEEEES-S---EEEEEETTCCSS------CSCCEESCGGGTTTHHHHHHTSGGGCC
T ss_pred cccccccccCceEEEEEECCCCCEEEEeeC-C---eEEEEeCCCCcc------ccceeeccccccccccccccccccccc
Confidence 000012244569999999999999999988 7 999999975 33 233333331 2
Q ss_pred eEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee----------------------------------ccccceeeE
Q 005140 516 NALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT----------------------------------AEHFMATDV 561 (712)
Q Consensus 516 ~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~----------------------------------~~~~~v~~~ 561 (712)
..++|+|+|++|++++. ||.|++||+.+++.+.. .....+.++
T Consensus 346 ~~~~~s~~~~~l~s~s~---dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 422 (447)
T 3dw8_B 346 FECCWNGSDSVVMTGSY---NNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHT 422 (447)
T ss_dssp CCEEECTTSSEEEEECS---TTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEE
T ss_pred eEEEECCCCCEEEEecc---CCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEE
Confidence 34999999999999998 99999999998766431 112457889
Q ss_pred EECCCCCEEEEEEccceeccccEEEEEe
Q 005140 562 EWDPTGRYVATAVTSVHEMENGFNIWSF 589 (712)
Q Consensus 562 ~~spdg~~l~t~s~~~~~~d~~v~iw~~ 589 (712)
+|+|+|.+||+++. +.+++|.-
T Consensus 423 ~~~p~~~~la~~~~------~~~~~~~~ 444 (447)
T 3dw8_B 423 AWHPKENIIAVATT------NNLYIFQD 444 (447)
T ss_dssp EECSSSSEEEEECS------SCEEEEEC
T ss_pred EECCCCCEEEEEec------ceeeeecc
Confidence 99999999999987 46888863
No 73
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=7.8e-28 Score=250.49 Aligned_cols=301 Identities=9% Similarity=0.076 Sum_probs=205.7
Q ss_pred EecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCceEEeecccCcceeeeecCCCeeEEEecCCCCEEE-EEcCC
Q 005140 196 LWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLV-TYSSH 274 (712)
Q Consensus 196 ~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~-t~s~d 274 (712)
+|++ ....++..+..|...|++++|||||++||+++.++++||+.. ....+....+.++..+++++++++++ +++.+
T Consensus 3 i~s~-~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (355)
T 3vu4_A 3 LGSM-ITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVH-PVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVK 80 (355)
T ss_dssp -----------------CCCCCEEEECTTSSEEEEECSSEEEEEEET-TEEEEEEEECSCCCEEEECTTSSEEEEECSST
T ss_pred cccc-cccCCccccccCCCceEEEEECCCCCEEEEEcCCEEEEEecC-CcceeeeeecCCeEEEEEcCCCCEEEEEECCc
Confidence 3444 344555567889999999999999999999999999999998 77777666666799999999999885 56666
Q ss_pred CCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCc-eec
Q 005140 275 EPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESF-TLI 353 (712)
Q Consensus 275 ~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~-~~~ 353 (712)
++|+|||+.+++.+..+..+.... ++.|++ + .++.+.++.|++|++.++ +.+
T Consensus 81 ----------~~v~iWd~~~~~~~~~~~~~~~v~--------------~v~~~~-~--~~~~~~~~~i~i~d~~~~~~~~ 133 (355)
T 3vu4_A 81 ----------EVVHIWDDVKKQDVSRIKVDAPVK--------------DLFLSR-E--FIVVSYGDVISVFKFGNPWKRI 133 (355)
T ss_dssp ----------TEEEEEETTTTEEEEEEECSSCEE--------------EEEECS-S--EEEEEETTEEEEEESSTTCCBS
T ss_pred ----------cEEEEEECCCCcEEEEEECCCceE--------------EEEEcC-C--EEEEEEcCEEEEEECCCCceee
Confidence 799999999999988887544322 678877 4 566667899999999987 555
Q ss_pred ccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccc
Q 005140 354 DKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTK 433 (712)
Q Consensus 354 ~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~ 433 (712)
..... ....++++| .++++.. ++.++. |.+|++.+......... .+...
T Consensus 134 ~~~~~---~~~~~~~s~--~~la~~s---g~~~g~--v~iwd~~~~~~~~~~~~----------~~~~~----------- 182 (355)
T 3vu4_A 134 TDDIR---FGGVCEFSN--GLLVYSN---EFNLGQ--IHITKLQSSGSATTQDQ----------GVQQK----------- 182 (355)
T ss_dssp SCCEE---EEEEEEEET--TEEEEEE---SSCTTC--EEEEECCC-----------------------------------
T ss_pred EEecc---CCceEEEEc--cEEEEeC---CCcCcE--EEEEECCCCCccccccc----------ccccc-----------
Confidence 44322 334456666 6666610 124444 44455443221100000 00000
Q ss_pred ccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCe-EEEEEeecccccCceeEEEEeC-
Q 005140 434 TKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPD-ISFYSMRTAQHAGRVSKLTTLK- 511 (712)
Q Consensus 434 ~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~-v~i~d~~~~~~~~~~~~~~~~~- 511 (712)
.+ .+ ....+.+|.+.|.+++|+|+|++|++++.|+ + |++||+.++. .+..+.
T Consensus 183 ---------~~-------~p-~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~---~~v~iwd~~~~~------~~~~~~~ 236 (355)
T 3vu4_A 183 ---------AI-------LG-KGVLIKAHTNPIKMVRLNRKSDMVATCSQDG---TIIRVFKTEDGV------LVREFRR 236 (355)
T ss_dssp ---------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTC---SEEEEEETTTCC------EEEEEEC
T ss_pred ---------cc-------Cc-ccEEEEccCCceEEEEECCCCCEEEEEeCCC---CEEEEEECCCCc------EEEEEEc
Confidence 00 00 0134668999999999999999999999999 8 9999997655 455554
Q ss_pred ---CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee-------------------------ccccceeeEEE
Q 005140 512 ---GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-------------------------AEHFMATDVEW 563 (712)
Q Consensus 512 ---~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~-------------------------~~~~~v~~~~~ 563 (712)
...|++++|+|+|++|++++. |+.|++||+........ ........++|
T Consensus 237 g~h~~~v~~~~~s~~~~~l~s~s~---d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 313 (355)
T 3vu4_A 237 GLDRADVVDMKWSTDGSKLAVVSD---KWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAW 313 (355)
T ss_dssp TTCCSCEEEEEECTTSCEEEEEET---TCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEE
T ss_pred CCCCCcEEEEEECCCCCEEEEEEC---CCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEE
Confidence 347999999999999999998 99999999975421110 01122367899
Q ss_pred CCCCCEEEEEEccceeccccEEEEEec
Q 005140 564 DPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 564 spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
+|+|++|++++. |+.+++|++.
T Consensus 314 ~~d~~~l~~~~~-----dg~~~~~~~~ 335 (355)
T 3vu4_A 314 ISESSLVVVWPH-----TRMIETFKVV 335 (355)
T ss_dssp SSSSEEEEEETT-----TTEEEEEEEE
T ss_pred eCCCCEEEEEeC-----CCeEEEEEEE
Confidence 999999999999 9999999976
No 74
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.96 E-value=2.9e-28 Score=277.77 Aligned_cols=273 Identities=12% Similarity=0.210 Sum_probs=217.3
Q ss_pred cCCCeeEEEecCCC-CEEEEEcCCCCCCCcCCCccEEEEEEccCC-----ceeeeccCCCcccccCCCCCcCCCCcCeEE
Q 005140 252 AHPQVKLIDFSPGE-KYLVTYSSHEPSNPRDANRVVINIFDVRTG-----KVMRDFKGSADEFAVGGTGGVAGVSWPVFR 325 (712)
Q Consensus 252 ~~~~v~~i~~Spdg-~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (712)
|...|++++|+|++ ++|+|++.| ++|+||++.++ ...+.+.+|...+. +++
T Consensus 381 H~~~V~~v~~~~~~~~~l~s~s~D----------~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~-------------~v~ 437 (694)
T 3dm0_A 381 HTDMVTAIATPIDNADIIVSASRD----------KSIILWKLTKDDKAYGVAQRRLTGHSHFVE-------------DVV 437 (694)
T ss_dssp CSSCEEEEECCTTCCSEEEEEETT----------SEEEEEECCCSTTCSCEEEEEEECCSSCEE-------------EEE
T ss_pred CCceeEEEEecCCCCCEEEEEeCC----------CcEEEEEccCCCcccccccceecCCCCcEE-------------EEE
Confidence 33449999999975 799999999 99999998653 34567888877764 799
Q ss_pred ecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceee
Q 005140 326 WGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ 404 (712)
Q Consensus 326 ~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (712)
|+| ++++|++++ |++|+|||+.++..+.....|...|.+++|+|++++|++ ++.|+.++||..
T Consensus 438 ~s~-~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s-----~s~D~~i~iwd~---------- 501 (694)
T 3dm0_A 438 LSS-DGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVS-----ASRDRTIKLWNT---------- 501 (694)
T ss_dssp ECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEE-----EETTSCEEEECT----------
T ss_pred ECC-CCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEE-----EeCCCEEEEEEC----------
Confidence 999 999999999 999999999998887777778889999999999999998 778888776531
Q ss_pred eeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCC--CEEEEEE
Q 005140 405 KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG--HRFAVIH 482 (712)
Q Consensus 405 ~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g--~~l~~~~ 482 (712)
.+... +.+.. ...+|...|.+++|+|++ ..|++++
T Consensus 502 ---------------~~~~~--------------------~~~~~--------~~~~h~~~v~~~~~~~~~~~~~l~s~s 538 (694)
T 3dm0_A 502 ---------------LGECK--------------------YTISE--------GGEGHRDWVSCVRFSPNTLQPTIVSAS 538 (694)
T ss_dssp ---------------TSCEE--------------------EEECS--------STTSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred ---------------CCCcc--------------------eeecc--------CCCCCCCcEEEEEEeCCCCcceEEEEe
Confidence 11100 00000 012678899999999987 5799999
Q ss_pred cCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee-cccccee
Q 005140 483 GDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-AEHFMAT 559 (712)
Q Consensus 483 ~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~-~~~~~v~ 559 (712)
.|+ .|++||+++.. ....+.+| .|++++|+|+|++|++++. ||.|++||+.+++.+.. .++..+.
T Consensus 539 ~d~---~v~vwd~~~~~------~~~~~~~h~~~v~~v~~spdg~~l~sg~~---Dg~i~iwd~~~~~~~~~~~~~~~v~ 606 (694)
T 3dm0_A 539 WDK---TVKVWNLSNCK------LRSTLAGHTGYVSTVAVSPDGSLCASGGK---DGVVLLWDLAEGKKLYSLEANSVIH 606 (694)
T ss_dssp TTS---CEEEEETTTCC------EEEEECCCSSCEEEEEECTTSSEEEEEET---TSBCEEEETTTTEEEECCBCSSCEE
T ss_pred CCC---eEEEEECCCCc------EEEEEcCCCCCEEEEEEeCCCCEEEEEeC---CCeEEEEECCCCceEEEecCCCcEE
Confidence 999 99999997644 45556544 6999999999999999998 99999999999888765 3456799
Q ss_pred eEEECCCCCEEEEEEccceeccccEEEEEecCce-eeeec---------------------ccceeeeEEecCCCCCCCh
Q 005140 560 DVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKL-LYRTL---------------------KDHFFQFLWRPRPPSFLTP 617 (712)
Q Consensus 560 ~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~-~~~~~---------------------~~~i~~~~w~p~~~~l~s~ 617 (712)
+++|+|++.+|++++. +.|+||++.... +.... .-.+.+++|+|++++|+++
T Consensus 607 ~~~~sp~~~~l~~~~~------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sg 680 (694)
T 3dm0_A 607 ALCFSPNRYWLCAATE------HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSG 680 (694)
T ss_dssp EEEECSSSSEEEEEET------TEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEE
T ss_pred EEEEcCCCcEEEEEcC------CCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEE
Confidence 9999999998877664 679999997543 22211 0126789999999999999
Q ss_pred hhHHHHH
Q 005140 618 EKEEEIA 624 (712)
Q Consensus 618 ~~d~~i~ 624 (712)
+.|+.|+
T Consensus 681 s~Dg~i~ 687 (694)
T 3dm0_A 681 YTDGVIR 687 (694)
T ss_dssp ETTSEEE
T ss_pred cCCCeEE
Confidence 9998765
No 75
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.96 E-value=9.2e-28 Score=243.43 Aligned_cols=261 Identities=14% Similarity=0.157 Sum_probs=196.0
Q ss_pred ccccCCCcccceEEEcCCCcEEEEEecCc-eEEeeccc-Ccceeeee-cCC-CeeEEEecCC--CCEEEEEcCCCCCCCc
Q 005140 207 PVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGAN-TFNRLMRY-AHP-QVKLIDFSPG--EKYLVTYSSHEPSNPR 280 (712)
Q Consensus 207 ~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~-~~~~~~~~-~~~-~v~~i~~Spd--g~~l~t~s~d~~~~~~ 280 (712)
..+.+|...|++++|||+|++||+++.|+ |+||+..+ ....+..+ .|. .|.+++|+|+ |++|++++.|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D------ 76 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD------ 76 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT------
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCC------
Confidence 35688999999999999999999999999 88999872 22344444 344 4999999874 8999999999
Q ss_pred CCCccEEEEEEccCCc--eeeeccCCCcccccCCCCCcCCCCcCeEEecCCC--CCEEEEec-CCeEEEEEcCCceec--
Q 005140 281 DANRVVINIFDVRTGK--VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK--DKYFAKLG-KNMISVYETESFTLI-- 353 (712)
Q Consensus 281 ~~~~~~I~iwd~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d--g~~la~~~-d~~i~iwd~~~~~~~-- 353 (712)
++|+|||+.+++ .+..+.+|...+. +++|+| + +.+|++++ |+.|++|++.+....
T Consensus 77 ----~~v~iWd~~~~~~~~~~~~~~h~~~v~-------------~v~~~p-~~~g~~l~s~s~d~~v~~wd~~~~~~~~~ 138 (297)
T 2pm7_B 77 ----GKVMIWKEENGRWSQIAVHAVHSASVN-------------SVQWAP-HEYGPMLLVASSDGKVSVVEFKENGTTSP 138 (297)
T ss_dssp ----TEEEEEEBSSSCBCCCEEECCCSSCEE-------------EEEECC-GGGCSEEEEEETTSEEEEEEBCSSSCBCC
T ss_pred ----CEEEEEEcCCCceEEEEEeecCCCcee-------------EEEeCc-CCCCcEEEEEECCCcEEEEEecCCCceee
Confidence 999999998874 4566667766553 799999 8 88999998 999999999865322
Q ss_pred ccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccc
Q 005140 354 DKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTK 433 (712)
Q Consensus 354 ~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~ 433 (712)
.....|...|.+++|+|++..-. ... ...+++++|++++.++.
T Consensus 139 ~~~~~h~~~v~~~~~~p~~~~~~--------~~~----------------------------~~~~~~~~l~sgs~D~~- 181 (297)
T 2pm7_B 139 IIIDAHAIGVNSASWAPATIEED--------GEH----------------------------NGTKESRKFVTGGADNL- 181 (297)
T ss_dssp EEEECCSSCEEEEEECCCC------------------------------------------------CCEEEEEETTSC-
T ss_pred eeeecccCccceEeecCCccccc--------ccC----------------------------CCCCCcceEEEEcCCCc-
Confidence 22335667799999999752110 000 01345678888888776
Q ss_pred ccccccccEEEEEEecCCcce-eEEEecCCCCceEEEEEeeCC---CEEEEEEcCCCCCeEEEEEeecccccCceeEEEE
Q 005140 434 TKKSTYTGFELFRIKERDIPI-EVLELDNKNDKIIAFAWEPKG---HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTT 509 (712)
Q Consensus 434 ~~~~~~~~~~l~~l~~~~~~~-~~~~l~~h~~~v~~~~~sp~g---~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~ 509 (712)
+++|++....... ....+.+|...|.+++|+|++ .+|++++.|+ .|+||++++.... . ....
T Consensus 182 --------v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~---~v~iWd~~~~~~~--~-~~~~ 247 (297)
T 2pm7_B 182 --------VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDR---TCIIWTQDNEQGP--W-KKTL 247 (297)
T ss_dssp --------EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS---CEEEEEESSTTSC--C-EEEE
T ss_pred --------EEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCC---cEEEEEeCCCCCc--c-ceee
Confidence 7888887643222 234577899999999999985 8999999999 9999999764321 1 1112
Q ss_pred e--C--CCceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 510 L--K--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 510 ~--~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
+ . ...+.+++|+|+|++|++++. ||.|++|+..
T Consensus 248 ~~~~~~~~~v~~~~~s~~g~~las~~~---D~~v~lw~~~ 284 (297)
T 2pm7_B 248 LKEEKFPDVLWRASWSLSGNVLALSGG---DNKVTLWKEN 284 (297)
T ss_dssp SSSSCCSSCEEEEEECSSSCCEEEEET---TSCEEEEEEC
T ss_pred eecccCCCcEEEEEECCCCCEEEEEcC---CCcEEEEEEC
Confidence 2 2 346899999999999999998 9999999976
No 76
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.96 E-value=1e-27 Score=245.39 Aligned_cols=265 Identities=15% Similarity=0.135 Sum_probs=193.0
Q ss_pred cccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcc--eeeee-cCC-CeeEEEecC--CCCEEEEEcCCCCCCCc
Q 005140 208 VYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN--RLMRY-AHP-QVKLIDFSP--GEKYLVTYSSHEPSNPR 280 (712)
Q Consensus 208 ~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~--~~~~~-~~~-~v~~i~~Sp--dg~~l~t~s~d~~~~~~ 280 (712)
.+.+|...|++++|||+|++||+++.|+ |+|||+. +.. .+..+ .|. .|.+++|+| ++++|++++.|
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~-~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D------ 80 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVR-NGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYD------ 80 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEE-TTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETT------
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEec-CCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECC------
Confidence 4578999999999999999999999999 8899998 443 33444 354 499999986 48999999999
Q ss_pred CCCccEEEEEEccCCc--eeeeccCCCcccccCCCCCcCCCCcCeEEecCCC--CCEEEEec-CCeEEEEEcCCcee---
Q 005140 281 DANRVVINIFDVRTGK--VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK--DKYFAKLG-KNMISVYETESFTL--- 352 (712)
Q Consensus 281 ~~~~~~I~iwd~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d--g~~la~~~-d~~i~iwd~~~~~~--- 352 (712)
++|+|||+.++. .+..+.+|...+. +++|+| + +.+|++++ |+.|++|++.+...
T Consensus 81 ----~~v~iWd~~~~~~~~~~~~~~h~~~V~-------------~v~~~p-~~~g~~lasgs~D~~i~lwd~~~~~~~~~ 142 (316)
T 3bg1_A 81 ----RKVIIWREENGTWEKSHEHAGHDSSVN-------------SVCWAP-HDYGLILACGSSDGAISLLTYTGEGQWEV 142 (316)
T ss_dssp ----SCEEEECCSSSCCCEEEEECCCSSCCC-------------EEEECC-TTTCSCEEEECSSSCEEEEEECSSSCEEE
T ss_pred ----CEEEEEECCCCcceEEEEccCCCCceE-------------EEEECC-CCCCcEEEEEcCCCCEEEEecCCCCCcce
Confidence 999999998874 5667777776653 799999 8 78999999 99999999986532
Q ss_pred cccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccc
Q 005140 353 IDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYT 432 (712)
Q Consensus 353 ~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~ 432 (712)
......|...|.+++|+|+...-.. ...+.. .....+.+|++++.++.
T Consensus 143 ~~~~~~h~~~v~~~~~~~~~~~~~~----------------~~~~~~----------------~~~~~~~~l~sgs~D~~ 190 (316)
T 3bg1_A 143 KKINNAHTIGCNAVSWAPAVVPGSL----------------IDHPSG----------------QKPNYIKRFASGGCDNL 190 (316)
T ss_dssp CCBTTSSSSCBCCCEECCCCCC----------------------CCS----------------CCCCCCCBEECCBTTSB
T ss_pred eeeeccccCCcceEEEccccCCccc----------------cccccc----------------cCccccceEEEecCCCe
Confidence 2333456677999999998421000 000000 01234567777777766
Q ss_pred cccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCC----CEEEEEEcCCCCCeEEEEEeeccccc-CceeEE
Q 005140 433 KTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG----HRFAVIHGDSPRPDISFYSMRTAQHA-GRVSKL 507 (712)
Q Consensus 433 ~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g----~~l~~~~~d~~~~~v~i~d~~~~~~~-~~~~~~ 507 (712)
+++|++...........+.+|...|.+++|+|++ ++|++++.|+ +|++|++.+.... .....+
T Consensus 191 ---------v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~---~v~iw~~~~~~~~~~~~~~~ 258 (316)
T 3bg1_A 191 ---------IKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDG---RVFIWTCDDASSNTWSPKLL 258 (316)
T ss_dssp ---------CCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTC---EEEEEECSSTTCCCCBCCEE
T ss_pred ---------EEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCC---eEEEEEccCccccchhhhhh
Confidence 6788875433222334577899999999999987 8899999999 9999998753211 011233
Q ss_pred EEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 508 TTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 508 ~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
.. ....+.+++|+|+|++|++++. |+.|++|+..
T Consensus 259 ~~-~~~~v~~v~~sp~g~~las~~~---D~~v~lw~~~ 292 (316)
T 3bg1_A 259 HK-FNDVVWHVSWSITANILAVSGG---DNKVTLWKES 292 (316)
T ss_dssp EE-CSSCEEEEEECTTTCCEEEEES---SSCEEEEEEC
T ss_pred hc-CCCcEEEEEEcCCCCEEEEEcC---CCeEEEEEEC
Confidence 32 2457999999999999999998 9999999976
No 77
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.96 E-value=2.1e-27 Score=240.79 Aligned_cols=241 Identities=16% Similarity=0.285 Sum_probs=186.4
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC--CceeeeccCCCcccccCCCCCcCCCCcCeEEecCCC-
Q 005140 254 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT--GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK- 330 (712)
Q Consensus 254 ~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d- 330 (712)
..|.+++|||+|++||+++.| ++|+|||+.+ ++.+..+.+|...+. +++|++ +
T Consensus 10 ~~V~~~~~s~~g~~las~s~D----------~~v~iw~~~~~~~~~~~~l~gH~~~V~-------------~v~~s~-~~ 65 (297)
T 2pm7_B 10 EMIHDAVMDYYGKRMATCSSD----------KTIKIFEVEGETHKLIDTLTGHEGPVW-------------RVDWAH-PK 65 (297)
T ss_dssp SCEEEEEECTTSSEEEEEETT----------SCEEEEEBCSSCBCCCEEECCCSSCEE-------------EEEECC-GG
T ss_pred CceEEEEECCCCCEEEEEeCC----------CEEEEEecCCCCcEEEEEEccccCCeE-------------EEEecC-CC
Confidence 359999999999999999999 9999999864 467888999988763 689986 5
Q ss_pred -CCEEEEec-CCeEEEEEcCCce--ecccccccccCeeeEEECCC--CCeEEEEeecCCCCCCCeEEEEEecCCccceee
Q 005140 331 -DKYFAKLG-KNMISVYETESFT--LIDKKSLKVENVMDFSWSPT--DPIISLFVPELGGGNQPARVSLVQIPSKEELRQ 404 (712)
Q Consensus 331 -g~~la~~~-d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~--~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (712)
+++|++++ |++|++|++.++. .+.....|...|.+++|+|+ +.+|++ ++.++.+++|.+......
T Consensus 66 ~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s-----~s~d~~v~~wd~~~~~~~---- 136 (297)
T 2pm7_B 66 FGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLV-----ASSDGKVSVVEFKENGTT---- 136 (297)
T ss_dssp GCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEE-----EETTSEEEEEEBCSSSCB----
T ss_pred cCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEE-----EECCCcEEEEEecCCCce----
Confidence 88999999 9999999998764 33333456677999999997 788887 666666655543211000
Q ss_pred eeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeC----------
Q 005140 405 KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK---------- 474 (712)
Q Consensus 405 ~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~---------- 474 (712)
....+.+|...|.+++|+|+
T Consensus 137 --------------------------------------------------~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~ 166 (297)
T 2pm7_B 137 --------------------------------------------------SPIIIDAHAIGVNSASWAPATIEEDGEHNG 166 (297)
T ss_dssp --------------------------------------------------CCEEEECCSSCEEEEEECCCC---------
T ss_pred --------------------------------------------------eeeeeecccCccceEeecCCcccccccCCC
Confidence 00123367778888888886
Q ss_pred ---CCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCC---CeEEEEeccCCCceEEEEECCc
Q 005140 475 ---GHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSG---RFIVLAGLKGFNGQLEFYNVDE 546 (712)
Q Consensus 475 ---g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg---~~l~~~~~~~~dg~v~iwd~~~ 546 (712)
+++|++++.|+ .|++||++++.. .......+.+| .|.+++|+|++ ++|++++. |+.|+|||+.+
T Consensus 167 ~~~~~~l~sgs~D~---~v~lwd~~~~~~--~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~---D~~v~iWd~~~ 238 (297)
T 2pm7_B 167 TKESRKFVTGGADN---LVKIWKYNSDAQ--TYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQ---DRTCIIWTQDN 238 (297)
T ss_dssp ---CCEEEEEETTS---CEEEEEEETTTT--EEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET---TSCEEEEEESS
T ss_pred CCCcceEEEEcCCC---cEEEEEEcCCCc--eEEEEEEecCCCCceEEEEECCCCCCceEEEEEEC---CCcEEEEEeCC
Confidence 57999999999 999999976442 12244556555 69999999995 89999998 99999999986
Q ss_pred ce-----eee--eccccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 547 LE-----TMA--TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 547 ~~-----~~~--~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
.. .+. ..+...+.+++|+|+|++||+++. |+.|+||+..
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~-----D~~v~lw~~~ 284 (297)
T 2pm7_B 239 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG-----DNKVTLWKEN 284 (297)
T ss_dssp TTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEET-----TSCEEEEEEC
T ss_pred CCCccceeeeecccCCCcEEEEEECCCCCEEEEEcC-----CCcEEEEEEC
Confidence 32 111 245578999999999999999999 9999999975
No 78
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.96 E-value=3.1e-27 Score=244.79 Aligned_cols=302 Identities=14% Similarity=0.164 Sum_probs=192.8
Q ss_pred ccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCc----ceeeee-cCC-CeeEEEecC--CCCEEEEEcCCCCC
Q 005140 207 PVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTF----NRLMRY-AHP-QVKLIDFSP--GEKYLVTYSSHEPS 277 (712)
Q Consensus 207 ~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~----~~~~~~-~~~-~v~~i~~Sp--dg~~l~t~s~d~~~ 277 (712)
..+.+|...|++++|||+|++||+++.++ |+||+.. +. ..+..+ .|. .|.+++|+| ++++|++++.|
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~d--- 80 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLD-KDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYD--- 80 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEEC-SSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETT---
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECC-CCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCC---
Confidence 35689999999999999999999999999 8899998 43 233333 244 599999999 69999999999
Q ss_pred CCcCCCccEEEEEEccCC---------ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCC--CCEEEEec-CCeEEEE
Q 005140 278 NPRDANRVVINIFDVRTG---------KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK--DKYFAKLG-KNMISVY 345 (712)
Q Consensus 278 ~~~~~~~~~I~iwd~~~g---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d--g~~la~~~-d~~i~iw 345 (712)
+.|++||+.++ +.+..+..|...+. +++|+| + +.+|++++ |+.|++|
T Consensus 81 -------g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~-------------~~~~~~-~~~~~~l~~~~~dg~v~iw 139 (351)
T 3f3f_A 81 -------KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLY-------------SVKFAP-AHLGLKLACLGNDGILRLY 139 (351)
T ss_dssp -------SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEE-------------EEEECC-GGGCSEEEEEETTCEEEEE
T ss_pred -------CeEEEEecCCCcccccccCcceeeeecccCCcee-------------EEEEcC-CCCCcEEEEecCCCcEEEe
Confidence 99999999887 55777777776653 799999 9 99999988 9999999
Q ss_pred EcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcC---CC
Q 005140 346 ETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSS---GD 422 (712)
Q Consensus 346 d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---g~ 422 (712)
|+.++..+....... .+..+.+.+.+ +......+.|+|+ +.
T Consensus 140 d~~~~~~~~~~~~~~-~~~~~~~~~~~-----------------------------------~~~~~~~~~~~p~~~~~~ 183 (351)
T 3f3f_A 140 DALEPSDLRSWTLTS-EMKVLSIPPAN-----------------------------------HLQSDFCLSWCPSRFSPE 183 (351)
T ss_dssp ECSSTTCTTCCEEEE-EEESCSCCCSS-----------------------------------CSCCCEEEEECCCSSSCC
T ss_pred cCCChHHhccccccc-cccccccccCC-----------------------------------cccceeEEEeccCCCCCc
Confidence 998776553322100 01111111100 0111122344554 55
Q ss_pred EEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCC----CEEEEEEcCCCCCeEEEEEeecc
Q 005140 423 YLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG----HRFAVIHGDSPRPDISFYSMRTA 498 (712)
Q Consensus 423 ~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g----~~l~~~~~d~~~~~v~i~d~~~~ 498 (712)
+++++..++. + +|.....+.......+.+|...|.+++|+|++ ++|++++.|+ .|++||+..+
T Consensus 184 ~l~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg---~i~iwd~~~~ 250 (351)
T 3f3f_A 184 KLAVSALEQA---------I-IYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDG---RIRIFKITEK 250 (351)
T ss_dssp EEEEEETTEE---------E-EEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTS---CEEEEEEEEC
T ss_pred EEEEecCCCc---------E-EEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCC---eEEEEeCCCC
Confidence 5555555443 2 33333323322335566899999999999998 8999999999 9999999765
Q ss_pred cccCceeEEEEeCCCceeEEEEccCCCeEEEEecc-CCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEc
Q 005140 499 QHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLK-GFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 499 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~-~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~ 575 (712)
... ..............+++....+..+... .....+.+|+....+.+.. .|...|++++|+|+|++|++++.
T Consensus 251 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~ 326 (351)
T 3f3f_A 251 LSP----LASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGD 326 (351)
T ss_dssp C-------------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEET
T ss_pred cCc----cccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecC
Confidence 421 1111111123334444444444443321 0144556666655565554 56789999999999999999999
Q ss_pred cceeccccEEEEEecC
Q 005140 576 SVHEMENGFNIWSFNG 591 (712)
Q Consensus 576 ~~~~~d~~v~iw~~~g 591 (712)
|+.|+||++..
T Consensus 327 -----dg~v~iw~~~~ 337 (351)
T 3f3f_A 327 -----DGKVRLWKATY 337 (351)
T ss_dssp -----TSCEEEEEECT
T ss_pred -----CCcEEEEecCc
Confidence 99999999973
No 79
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.96 E-value=2e-27 Score=246.20 Aligned_cols=273 Identities=12% Similarity=0.115 Sum_probs=206.6
Q ss_pred ccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcc----eeeeecCC-CeeEEEecCCCC-EEEEEcCCCCCCCcC
Q 005140 209 YKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFN----RLMRYAHP-QVKLIDFSPGEK-YLVTYSSHEPSNPRD 281 (712)
Q Consensus 209 ~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~----~~~~~~~~-~v~~i~~Spdg~-~l~t~s~d~~~~~~~ 281 (712)
..+|...|++++|+|+|++||+++.++ |+||+.. +.. ......|. .|.+++|+|+++ +|++++.+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------- 78 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFD-IQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQ------- 78 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEE-TTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETT-------
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeC-CCCccccceeeeecCCceEEEEECCCCCcEEEEEcCC-------
Confidence 457999999999999999999999999 8899998 544 33334455 499999999999 99999999
Q ss_pred CCccEEEEEEc-cCCceeeeccC--CCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCC--------
Q 005140 282 ANRVVINIFDV-RTGKVMRDFKG--SADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETES-------- 349 (712)
Q Consensus 282 ~~~~~I~iwd~-~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~-------- 349 (712)
+.|++||+ .+++. ..+.+ |...+. +++|+| +.+|++++ |+.|++|++.+
T Consensus 79 ---g~i~~wd~~~~~~~-~~~~~~~~~~~v~-------------~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 139 (342)
T 1yfq_A 79 ---GEILKVDLIGSPSF-QALTNNEANLGIC-------------RICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAV 139 (342)
T ss_dssp ---SCEEEECSSSSSSE-EECBSCCCCSCEE-------------EEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEE
T ss_pred ---CeEEEEEeccCCce-EeccccCCCCceE-------------EEEeCC--CCEEEEEcCCCeEEEEcccccccccccc
Confidence 99999999 77765 66766 766553 689998 56677776 99999999987
Q ss_pred -ceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCC-ccceeeeeeeeecceeEEECcCCCEEEEE
Q 005140 350 -FTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS-KEELRQKNLFSVSDCKMYWQSSGDYLAVK 427 (712)
Q Consensus 350 -~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~g~~l~~~ 427 (712)
++.+.... +...|.+++|+|++ +++ ++.++.++ +|++.. ..
T Consensus 140 ~~~~~~~~~-~~~~v~~~~~~~~~--l~~-----~~~d~~i~--i~d~~~~~~--------------------------- 182 (342)
T 1yfq_A 140 KNLNSNNTK-VKNKIFTMDTNSSR--LIV-----GMNNSQVQ--WFRLPLCED--------------------------- 182 (342)
T ss_dssp EESCSSSSS-SCCCEEEEEECSSE--EEE-----EESTTEEE--EEESSCCTT---------------------------
T ss_pred cCCeeeEEe-eCCceEEEEecCCc--EEE-----EeCCCeEE--EEECCcccc---------------------------
Confidence 66554443 55678899998887 554 33444433 333322 11
Q ss_pred EcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee-CCCEEEEEEcCCCCCeEEEEEeecccccCceeE
Q 005140 428 VDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSK 506 (712)
Q Consensus 428 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~ 506 (712)
.... .....|...+.+++|+| ++++|++++.++ .|++|+++..........
T Consensus 183 ------------------------~~~~-~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg---~i~i~~~~~~~~~~~~~~ 234 (342)
T 1yfq_A 183 ------------------------DNGT-IEESGLKYQIRDVALLPKEQEGYACSSIDG---RVAVEFFDDQGDDYNSSK 234 (342)
T ss_dssp ------------------------CCCE-EEECSCSSCEEEEEECSGGGCEEEEEETTS---EEEEEECCTTCCSTTCTT
T ss_pred ------------------------ccce-eeecCCCCceeEEEECCCCCCEEEEEecCC---cEEEEEEcCCCccccccc
Confidence 0000 11225678899999999 999999999999 999999976510000002
Q ss_pred EEEeCCC-----------ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--cc-ccceeeEEECCCCCEEEE
Q 005140 507 LTTLKGK-----------QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AE-HFMATDVEWDPTGRYVAT 572 (712)
Q Consensus 507 ~~~~~~~-----------~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~-~~~v~~~~~spdg~~l~t 572 (712)
...+..+ .+++++|+|+|++|++++. ||.|++||+.+++.+.. .| ...|++++ |+|++|++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s 309 (342)
T 1yfq_A 235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS---DGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCL 309 (342)
T ss_dssp CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET---TSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEE
T ss_pred ceeeecccccccccccceeEEEEEEcCCCCEEEEecC---CceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEE
Confidence 2222222 7999999999999999998 99999999998887765 45 67899999 99999999
Q ss_pred EEccceecccc
Q 005140 573 AVTSVHEMENG 583 (712)
Q Consensus 573 ~s~~~~~~d~~ 583 (712)
++. |+.
T Consensus 310 ~s~-----Dg~ 315 (342)
T 1yfq_A 310 ATS-----DDT 315 (342)
T ss_dssp EEE-----CTH
T ss_pred Eec-----CCc
Confidence 999 776
No 80
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.96 E-value=1.6e-27 Score=249.24 Aligned_cols=292 Identities=12% Similarity=0.121 Sum_probs=210.2
Q ss_pred cchhhccCCC---CCceEEEEECCeeEEEecCCCCCCCcccccC-----CCcccceEEEcCC----CcEEEEEecCc-eE
Q 005140 171 NLQKWLTDEK---ARDQFVIRSGTDTEVLWNDARHLKPEPVYKR-----SYWTESFVQWSPL----GTYLATVHRQG-AA 237 (712)
Q Consensus 171 ~l~~~~~~~~---~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-----~~~~v~~v~~Spd----g~~lat~~~~~-i~ 237 (712)
.+.+..++|. +...+++..+++.+.+|+.. .......++. |...|++++|+|+ |++||+++.++ |+
T Consensus 20 ~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~ 98 (366)
T 3k26_A 20 PLFGVQFNWHSKEGDPLVFATVGSNRVTLYECH-SQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIR 98 (366)
T ss_dssp CEEEEEECTTCCTTSCEEEEEEETTEEEEEEEC-GGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEE
T ss_pred ceEEEEEecccCCCCceEEEECCCCEEEEEEcC-CCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEE
Confidence 4445555653 66678888888889999983 3444444433 5578999999999 78999999999 88
Q ss_pred EeecccCcceeeeec-CC-CeeEEEecC-CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeec---cCCCcccccC
Q 005140 238 VWGGANTFNRLMRYA-HP-QVKLIDFSP-GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDF---KGSADEFAVG 311 (712)
Q Consensus 238 iw~~~~~~~~~~~~~-~~-~v~~i~~Sp-dg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~---~~~~~~~~~~ 311 (712)
||+.. +.+.+..+. |. .|.+++|+| ++++|++++.+ +.|++||+.+++.+..+ ..|...+.
T Consensus 99 v~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~~v~-- 165 (366)
T 3k26_A 99 IINPI-TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKD----------HALRLWNIQTDTLVAIFGGVEGHRDEVL-- 165 (366)
T ss_dssp EECTT-TCCEEEEEESCCSCEEEEEECSSCTTEEEEEETT----------SCEEEEETTTTEEEEEECSTTSCSSCEE--
T ss_pred EEEch-hceEeeeecCCCCcEEEEEECCCCCCEEEEEeCC----------CeEEEEEeecCeEEEEecccccccCcee--
Confidence 99999 777777664 55 499999999 99999999999 99999999999988887 56666553
Q ss_pred CCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccc----------------------------cccC
Q 005140 312 GTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSL----------------------------KVEN 362 (712)
Q Consensus 312 ~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~----------------------------~~~~ 362 (712)
+++|+| ++++|++++ |+.|++|++.++..+..... +...
T Consensus 166 -----------~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (366)
T 3k26_A 166 -----------SADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNY 233 (366)
T ss_dssp -----------EEEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSC
T ss_pred -----------EEEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcce
Confidence 799999 999999998 99999999998765433222 4444
Q ss_pred eeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccE
Q 005140 363 VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGF 442 (712)
Q Consensus 363 v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~ 442 (712)
|.+++|+ +.+|++ ++.++.+++|.. ......... ..+...
T Consensus 234 v~~~~~~--~~~l~~-----~~~d~~i~~wd~--~~~~~~~~~-----------~~~~~~-------------------- 273 (366)
T 3k26_A 234 VDCVRWL--GDLILS-----KSCENAIVCWKP--GKMEDDIDK-----------IKPSES-------------------- 273 (366)
T ss_dssp CCEEEEE--TTEEEE-----ECSSSEEEEEEE--SSTTCCGGG-----------CCTTCC--------------------
T ss_pred EEEEEEc--CCEEEE-----EecCCEEEEEeC--CCccccccc-----------cccCCc--------------------
Confidence 6666665 445555 444444333332 221100000 000000
Q ss_pred EEEEEecCCcceeEEEecCCCCceEEEEEeeC--CCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC----Ccee
Q 005140 443 ELFRIKERDIPIEVLELDNKNDKIIAFAWEPK--GHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG----KQAN 516 (712)
Q Consensus 443 ~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~--g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~----~~v~ 516 (712)
.......+..|...|.+++|+|+ +++|++++.++ .|++|++.++.... .....+.. ..++
T Consensus 274 ---------~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~--~~~~~~~~~~~~~~v~ 339 (366)
T 3k26_A 274 ---------NVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVG---KLYVWDLEVEDPHK--AKCTTLTHHKCGAAIR 339 (366)
T ss_dssp ---------CEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTS---CEEEEECCSSSGGG--CEEEEECCTTCCSCEE
T ss_pred ---------chheeccccccCCcEEEEEEcCCCCCcEEEEEecCC---cEEEEECCCCCCcc--ccceEEcccccCCceE
Confidence 00112345578889999999999 99999999999 99999998754321 13334433 4799
Q ss_pred EEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 517 ALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 517 ~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
+++|+|+|++|++++. ||.|++||+.
T Consensus 340 ~~~~s~~~~~l~s~~~---dg~i~iwd~~ 365 (366)
T 3k26_A 340 QTSFSRDSSILIAVCD---DASIWRWDRL 365 (366)
T ss_dssp EEEECTTSSEEEEEET---TSEEEEEEC-
T ss_pred EEEeCCCCCeEEEEeC---CCEEEEEEec
Confidence 9999999999999998 9999999985
No 81
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.96 E-value=3.4e-27 Score=245.86 Aligned_cols=284 Identities=12% Similarity=0.177 Sum_probs=210.0
Q ss_pred CCCeeEEEecCCCCEEE-EEcC---CCCCCCcCCCccEEEEEEccCCceeeecc-CCCcccccCCCCCcCCCCcCeEEec
Q 005140 253 HPQVKLIDFSPGEKYLV-TYSS---HEPSNPRDANRVVINIFDVRTGKVMRDFK-GSADEFAVGGTGGVAGVSWPVFRWG 327 (712)
Q Consensus 253 ~~~v~~i~~Spdg~~l~-t~s~---d~~~~~~~~~~~~I~iwd~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s 327 (712)
...|.+++|+|++..|+ +++. + +.|+|||+.+++...... .|...+. +++|+
T Consensus 18 ~~~v~~~~~~p~~~~l~~~~s~~~~d----------~~v~iw~~~~~~~~~~~~~~~~~~v~-------------~~~~~ 74 (357)
T 3i2n_A 18 NYTVFDCKWVPCSAKFVTMGNFARGT----------GVIQLYEIQHGDLKLLREIEKAKPIK-------------CGTFG 74 (357)
T ss_dssp SSCEEEEEECTTSSEEEEEEC--CCC----------EEEEEEEECSSSEEEEEEEEESSCEE-------------EEECT
T ss_pred CCceEEEEEcCCCceEEEecCccCCC----------cEEEEEeCCCCcccceeeecccCcEE-------------EEEEc
Confidence 34599999999996555 5554 6 899999999888654433 4444442 79999
Q ss_pred CCC---CCEEEEec-CCeEEEEEcCCce-ecccccccccCeeeE------EECCCCCeEEEEeecCCCCCCCeEEEEEec
Q 005140 328 GGK---DKYFAKLG-KNMISVYETESFT-LIDKKSLKVENVMDF------SWSPTDPIISLFVPELGGGNQPARVSLVQI 396 (712)
Q Consensus 328 ~~d---g~~la~~~-d~~i~iwd~~~~~-~~~~~~~~~~~v~~~------~~sp~~~~la~~~~~~~~~~~~~~i~~~~~ 396 (712)
| + +.+|++++ |+.|++|++.++. .+.....|...|.++ +|+|++++|++ ++.++.+++ |++
T Consensus 75 ~-~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~-----~~~d~~i~v--wd~ 146 (357)
T 3i2n_A 75 A-TSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVT-----GSRDGTVKV--WDP 146 (357)
T ss_dssp T-CCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEE-----EETTSCEEE--ECT
T ss_pred C-CCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEE-----EeCCCeEEE--EeC
Confidence 9 8 68999988 9999999999887 665566677789998 45789999998 667766555 455
Q ss_pred CCcc-ceeeeeeee----ecceeEE----ECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceE
Q 005140 397 PSKE-ELRQKNLFS----VSDCKMY----WQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKII 467 (712)
Q Consensus 397 ~~~~-~~~~~~~~~----~~~~~~~----~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~ 467 (712)
.... .+.....+. .....+. |+|++.+|+++..++. +.+|++..... .....|...|.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~---------i~i~d~~~~~~----~~~~~~~~~v~ 213 (357)
T 3i2n_A 147 RQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGD---------IKLFDLRNMAL----RWETNIKNGVC 213 (357)
T ss_dssp TSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSE---------EEEEETTTTEE----EEEEECSSCEE
T ss_pred CCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCe---------EEEEECccCce----eeecCCCCceE
Confidence 4443 222222111 1233344 7899999999998876 78888765322 33346789999
Q ss_pred EEEEee---CCCEEEEEEcCCCCCeEEEEEeecccccCceeEEE-EeCCCceeEEEEccCCC-eEEEEeccCCCceEEEE
Q 005140 468 AFAWEP---KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLT-TLKGKQANALFWSPSGR-FIVLAGLKGFNGQLEFY 542 (712)
Q Consensus 468 ~~~~sp---~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~-~~~~~~v~~l~~spdg~-~l~~~~~~~~dg~v~iw 542 (712)
+++|+| ++.+|++++.++ .|++||++++.....+.... ..+...+++++|+|+|+ +|++++. ||.|++|
T Consensus 214 ~~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~iw 287 (357)
T 3i2n_A 214 SLEFDRKDISMNKLVATSLEG---KFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGG---AGGLHLW 287 (357)
T ss_dssp EEEESCSSSSCCEEEEEESTT---EEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEET---TSEEEEE
T ss_pred EEEcCCCCCCCCEEEEECCCC---eEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeC---CCcEEEe
Confidence 999999 999999999999 99999998755332221111 12344799999999999 7888888 9999999
Q ss_pred ECCcce-------------------eee--eccccceeeEEECCCCCEEE-EEEccceeccccEEEEEecC
Q 005140 543 NVDELE-------------------TMA--TAEHFMATDVEWDPTGRYVA-TAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 543 d~~~~~-------------------~~~--~~~~~~v~~~~~spdg~~l~-t~s~~~~~~d~~v~iw~~~g 591 (712)
|+.... .+. ..|...|++++|+|+|++|+ +++. |+.++||++..
T Consensus 288 d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~-----d~~i~iw~~~~ 353 (357)
T 3i2n_A 288 KYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSF-----DQTVRVLIVTK 353 (357)
T ss_dssp EEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEET-----TSEEEEEEECC
T ss_pred ecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecC-----CCcEEEEECCC
Confidence 987432 222 35678999999999999998 7888 99999999863
No 82
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.96 E-value=3.6e-27 Score=249.71 Aligned_cols=288 Identities=11% Similarity=0.116 Sum_probs=213.8
Q ss_pred chhhccCCCCCceEEEEECCeeEEEecCCCCCC------CcccccCCCcccceEEEcCC----C---cEEEEEecCc-eE
Q 005140 172 LQKWLTDEKARDQFVIRSGTDTEVLWNDARHLK------PEPVYKRSYWTESFVQWSPL----G---TYLATVHRQG-AA 237 (712)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~------~~~~~~~~~~~v~~v~~Spd----g---~~lat~~~~~-i~ 237 (712)
+.+..++| ..+++.+.++.+.+|+.. ... ....+.+|...|++++|+|+ | ++|++++.++ |+
T Consensus 19 i~~~~~~~---~~l~s~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~ 94 (397)
T 1sq9_A 19 IFSVSACN---SFTVSCSGDGYLKVWDNK-LLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLL 94 (397)
T ss_dssp EEEEEECS---SEEEEEETTSEEEEEESB-CCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEE
T ss_pred eEEEEecC---CeEEEEcCCCEEEEEECC-CcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEE
Confidence 44444455 577888889999999994 443 56677899999999999999 9 9999999998 88
Q ss_pred EeecccCcce-----eeee-cC------CCeeEEEec----CCCCE-EEEEcCCCCCCCcCCCccEEEEEEccC------
Q 005140 238 VWGGANTFNR-----LMRY-AH------PQVKLIDFS----PGEKY-LVTYSSHEPSNPRDANRVVINIFDVRT------ 294 (712)
Q Consensus 238 iw~~~~~~~~-----~~~~-~~------~~v~~i~~S----pdg~~-l~t~s~d~~~~~~~~~~~~I~iwd~~~------ 294 (712)
+|++. +... +..+ .| ..|.+++|+ |++++ |++++.+ +.|++||+.+
T Consensus 95 iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 95 FYRIT-REDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK----------GTTYIWKFHPFADESN 163 (397)
T ss_dssp EEEEE-ECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT----------SCEEEEEEESSSSHHH
T ss_pred EEEcc-CCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC----------CcEEEEeCCccccccc
Confidence 99998 5553 4444 34 559999999 99999 9999999 9999999988
Q ss_pred Cceee-----eccC-------CCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccc---
Q 005140 295 GKVMR-----DFKG-------SADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSL--- 358 (712)
Q Consensus 295 g~~~~-----~~~~-------~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~--- 358 (712)
++.+. .+.+ |...+. +++|+| ++ +|++++ ++.|++|++.+++.+.....
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~-------------~~~~~~-~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 228 (397)
T 1sq9_A 164 SLTLNWSPTLELQGTVESPMTPSQFAT-------------SVDISE-RG-LIATGFNNGTVQISELSTLRPLYNFESQHS 228 (397)
T ss_dssp HTTTCCCCEEEEEEEECCSSSSCCCCC-------------EEEECT-TS-EEEEECTTSEEEEEETTTTEEEEEEECCC-
T ss_pred cceeeccCcceeeeeeccccCCCCCce-------------EEEECC-Cc-eEEEEeCCCcEEEEECCCCceeEEEecccc
Confidence 66665 5532 333332 799999 99 999988 99999999998887776666
Q ss_pred c---ccCeeeEEECCCCCeEEEEeecCCCCC-CCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccc
Q 005140 359 K---VENVMDFSWSPTDPIISLFVPELGGGN-QPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKT 434 (712)
Q Consensus 359 ~---~~~v~~~~~sp~~~~la~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~ 434 (712)
| ...|.+++|+|++.+|++ ++.+ ....|.+|++.+.+.+....... .+..
T Consensus 229 h~~~~~~i~~i~~~~~~~~l~~-----~~~d~~~g~i~i~d~~~~~~~~~~~~~~--------~~~~------------- 282 (397)
T 1sq9_A 229 MINNSNSIRSVKFSPQGSLLAI-----AHDSNSFGCITLYETEFGERIGSLSVPT--------HSSQ------------- 282 (397)
T ss_dssp --CCCCCEEEEEECSSTTEEEE-----EEEETTEEEEEEEETTTCCEEEEECBC--------------------------
T ss_pred ccccCCccceEEECCCCCEEEE-----EecCCCCceEEEEECCCCcccceeccCc--------cccc-------------
Confidence 6 778999999999999988 4333 11456666665443222111000 0000
Q ss_pred cccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC---
Q 005140 435 KKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--- 511 (712)
Q Consensus 435 ~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--- 511 (712)
..+....|...|.+++|+|++++|++++.|+ .|++||+.++. .+..+.
T Consensus 283 --------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~------~~~~~~~~~ 333 (397)
T 1sq9_A 283 --------------------ASLGEFAHSSWVMSLSFNDSGETLCSAGWDG---KLRFWDVKTKE------RITTLNMHC 333 (397)
T ss_dssp -----------------------CCBSBSSCEEEEEECSSSSEEEEEETTS---EEEEEETTTTE------EEEEEECCG
T ss_pred --------------------ccccccccCCcEEEEEECCCCCEEEEEeCCC---eEEEEEcCCCc------eeEEEeccc
Confidence 0000113788999999999999999999999 99999997654 444444
Q ss_pred --------------------CCceeEEEEccCC----------CeEEEEeccCCCceEEEEECCcc
Q 005140 512 --------------------GKQANALFWSPSG----------RFIVLAGLKGFNGQLEFYNVDEL 547 (712)
Q Consensus 512 --------------------~~~v~~l~~spdg----------~~l~~~~~~~~dg~v~iwd~~~~ 547 (712)
...+++++|+|+| ++|++++. ||.|++|++.++
T Consensus 334 ~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~---dg~i~iw~~~~g 396 (397)
T 1sq9_A 334 DDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCL---DRSIRWFREAGG 396 (397)
T ss_dssp GGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEET---TTEEEEEEEEC-
T ss_pred CcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecC---CCcEEEEEcCCC
Confidence 4579999999999 79999998 999999999865
No 83
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.96 E-value=5.1e-27 Score=247.40 Aligned_cols=283 Identities=10% Similarity=0.099 Sum_probs=209.9
Q ss_pred ccchhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccc--cCCCcccceEEEcC-CCcEEEEEecCc-eEEeecccCc
Q 005140 170 ENLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVY--KRSYWTESFVQWSP-LGTYLATVHRQG-AAVWGGANTF 245 (712)
Q Consensus 170 ~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~v~~v~~Sp-dg~~lat~~~~~-i~iw~~~~~~ 245 (712)
..+.+..++|++...+++.+.++.+.+|+.. .......+ .+|...|++++|+| ++.+|++++.++ |++|+.. +.
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~ 151 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYD-VQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFS-GS 151 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETT-STTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETT-SC
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCC-CcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECC-CC
Confidence 3455566677776688888889999999994 44444444 47999999999999 789999999999 8899998 43
Q ss_pred ceeeee--cC---CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCC
Q 005140 246 NRLMRY--AH---PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVS 320 (712)
Q Consensus 246 ~~~~~~--~~---~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (712)
.+..+ ++ ..|.+++|+|++++|++++.+ +.|++||+ +++.+..+..|...+.
T Consensus 152 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------~~i~i~d~-~~~~~~~~~~h~~~v~----------- 208 (383)
T 3ei3_B 152 -VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDST----------GRLLLLGL-DGHEIFKEKLHKAKVT----------- 208 (383)
T ss_dssp -EEEEEECCCCSSCCEEEEEEETTTTEEEEEETT----------SEEEEEET-TSCEEEEEECSSSCEE-----------
T ss_pred -ceEEEeccCCCCCCeEEEEECCCCCEEEEECCC----------CCEEEEEC-CCCEEEEeccCCCcEE-----------
Confidence 33333 22 349999999999999999999 99999998 7888999988887664
Q ss_pred cCeEEecCCCCC-EEEEec-CCeEEEEEcCC----ceecccccccccCeeeEEECC-CCCeEEEEeecCCCCCCCeEEEE
Q 005140 321 WPVFRWGGGKDK-YFAKLG-KNMISVYETES----FTLIDKKSLKVENVMDFSWSP-TDPIISLFVPELGGGNQPARVSL 393 (712)
Q Consensus 321 ~~~~~~s~~dg~-~la~~~-d~~i~iwd~~~----~~~~~~~~~~~~~v~~~~~sp-~~~~la~~~~~~~~~~~~~~i~~ 393 (712)
+++|+| +++ +|++++ |+.|++||+.+ +..+... .+...|.+++|+| ++.+|++ ++.++. |.+
T Consensus 209 --~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~-----~~~d~~--i~i 277 (383)
T 3ei3_B 209 --HAEFNP-RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLT-----TDQRNE--IRV 277 (383)
T ss_dssp --EEEECS-SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEE-----EESSSE--EEE
T ss_pred --EEEECC-CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEE-----EcCCCc--EEE
Confidence 799999 998 888888 99999999987 3344333 4667899999999 9999998 555554 555
Q ss_pred EecCCccceeeeeeee------ecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceE
Q 005140 394 VQIPSKEELRQKNLFS------VSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKII 467 (712)
Q Consensus 394 ~~~~~~~~~~~~~~~~------~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~ 467 (712)
|++.+...+.....+. ...+...|+| .+.+.
T Consensus 278 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------------------------------------------~~~~~ 314 (383)
T 3ei3_B 278 YSSYDWSKPDQIIIHPHRQFQHLTPIKATWHP-------------------------------------------MYDLI 314 (383)
T ss_dssp EETTBTTSCSEEEECCBCCCTTSCCCCCEECS-------------------------------------------SSSEE
T ss_pred EECCCCccccccccccccccccccceEEeccC-------------------------------------------CCCce
Confidence 6655544322211110 0011112222 34455
Q ss_pred EEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC----CceeEEEEccCCCeEEEEeccCCCceEEEEE
Q 005140 468 AFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG----KQANALFWSPSGRFIVLAGLKGFNGQLEFYN 543 (712)
Q Consensus 468 ~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~----~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd 543 (712)
.++|+|+|++ +++.|+ .|++||+.++. .+..+.. ..+..++|+|+|++|++++ ||.|+|||
T Consensus 315 ~~~~s~dg~~--s~s~d~---~i~iwd~~~~~------~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s----d~~i~iw~ 379 (383)
T 3ei3_B 315 VAGRYPDDQL--LLNDKR---TIDIYDANSGG------LVHQLRDPNAAGIISLNKFSPTGDVLASGM----GFNILIWN 379 (383)
T ss_dssp EEECBCCTTT--CTTCCC---CEEEEETTTCC------EEEEECBTTBCSCCCEEEECTTSSEEEEEE----TTEEEEEE
T ss_pred EEEecCCccc--ccCCCC---eEEEEecCCCc------eeeeecCCCCCceEEEEEEecCccEEEEec----CCcEEEEe
Confidence 6778888887 666777 99999997655 4555543 2467789999999999985 89999999
Q ss_pred CCc
Q 005140 544 VDE 546 (712)
Q Consensus 544 ~~~ 546 (712)
+++
T Consensus 380 ~~~ 382 (383)
T 3ei3_B 380 RED 382 (383)
T ss_dssp CC-
T ss_pred cCC
Confidence 873
No 84
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.1e-28 Score=265.09 Aligned_cols=308 Identities=10% Similarity=0.100 Sum_probs=227.7
Q ss_pred eEEEcCCCcEEEEEecCceEEeecccCcceeeee--cC-CCeeEEEecC-CCCEEEEEcCCCCCCCcCCCccEEEEEEcc
Q 005140 218 FVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRY--AH-PQVKLIDFSP-GEKYLVTYSSHEPSNPRDANRVVINIFDVR 293 (712)
Q Consensus 218 ~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~--~~-~~v~~i~~Sp-dg~~l~t~s~d~~~~~~~~~~~~I~iwd~~ 293 (712)
...|+|+|+.+++++ .|+.. ++.+..+ +| ..|.+++|+| ++++||+++.| ++|+|||+.
T Consensus 32 ~~~f~~~~~~~~~~~-----~w~~~--g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~d----------g~v~vwd~~ 94 (437)
T 3gre_A 32 YKEFGPIQEIVRSPN-----MGNLR--GKLIATLMENEPNSITSSAVSPGETPYLITGSDQ----------GVIKIWNLK 94 (437)
T ss_dssp CGGGCCCCCCCCCCC-----GGGCC--CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETT----------SEEEEEEHH
T ss_pred hhhcCCccccccccc-----ccccc--ceEEeeeccCCCCceEEEEECCCCCCEEEEecCC----------ceEEEeECc
Confidence 346899999888776 48755 5555555 34 4599999999 99999999999 999999987
Q ss_pred C---Cce---eeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcC---CceecccccccccCe
Q 005140 294 T---GKV---MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETE---SFTLIDKKSLKVENV 363 (712)
Q Consensus 294 ~---g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~---~~~~~~~~~~~~~~v 363 (712)
+ +.. ...+ .|...+. +++|+| ++++|++++ |+.|++|++. +++.+.....+ .+
T Consensus 95 ~~~~~~~~~~~~~~-~h~~~v~-------------~~~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i 157 (437)
T 3gre_A 95 EIIVGEVYSSSLTY-DCSSTVT-------------QITMIP-NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CI 157 (437)
T ss_dssp HHHTTCCCSCSEEE-ECSSCEE-------------EEEECT-TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EE
T ss_pred ccccCcccceeeec-cCCCCEE-------------EEEEeC-CCCEEEEEeCCCEEEEEEeccccCCceeeccccc--ee
Confidence 6 432 2222 3444442 799999 999999999 9999999995 44433222222 56
Q ss_pred eeEEECCCC--CeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccccccc
Q 005140 364 MDFSWSPTD--PIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTG 441 (712)
Q Consensus 364 ~~~~~sp~~--~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~ 441 (712)
..+.|+|++ ..+.. +...+++++.+|++++.++.
T Consensus 158 ~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~l~~~~~d~~--------- 193 (437)
T 3gre_A 158 RKINLKNFGKNEYAVR-----------------------------------MRAFVNEEKSLLVALTNLSR--------- 193 (437)
T ss_dssp EEEEGGGGSSCCCEEE-----------------------------------EEEEECSSCEEEEEEETTSE---------
T ss_pred EEEEccCcccccCceE-----------------------------------EEEEEcCCCCEEEEEeCCCe---------
Confidence 677777632 22111 11236889999999998877
Q ss_pred EEEEEEecCCcceeEEEecC--CCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC---CCcee
Q 005140 442 FELFRIKERDIPIEVLELDN--KNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK---GKQAN 516 (712)
Q Consensus 442 ~~l~~l~~~~~~~~~~~l~~--h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~---~~~v~ 516 (712)
+.+|++.... .. ..+.+ |...|.+++|+|++++|++++.|+ .|++||++++. .+..+. ..++.
T Consensus 194 i~iwd~~~~~-~~--~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg---~i~iwd~~~~~------~~~~~~~~~~~~v~ 261 (437)
T 3gre_A 194 VIIFDIRTLE-RL--QIIENSPRHGAVSSICIDEECCVLILGTTRG---IIDIWDIRFNV------LIRSWSFGDHAPIT 261 (437)
T ss_dssp EEEEETTTCC-EE--EEEECCGGGCCEEEEEECTTSCEEEEEETTS---CEEEEETTTTE------EEEEEBCTTCEEEE
T ss_pred EEEEeCCCCe-ee--EEEccCCCCCceEEEEECCCCCEEEEEcCCC---eEEEEEcCCcc------EEEEEecCCCCceE
Confidence 7888876532 22 33434 789999999999999999999999 99999997643 455543 23689
Q ss_pred EEEEc----cCCCeEEEEeccCCCceEEEEECCcceeeeec----------------------------cccceeeEEEC
Q 005140 517 ALFWS----PSGRFIVLAGLKGFNGQLEFYNVDELETMATA----------------------------EHFMATDVEWD 564 (712)
Q Consensus 517 ~l~~s----pdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~----------------------------~~~~v~~~~~s 564 (712)
+++|+ |+|++|++++. ||.|++||+.+++.+... |...|++++|+
T Consensus 262 ~~~~~~~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~ 338 (437)
T 3gre_A 262 HVEVCQFYGKNSVIVVGGSS---KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS 338 (437)
T ss_dssp EEEECTTTCTTEEEEEEEST---TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE
T ss_pred EEEeccccCCCccEEEEEcC---CCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC
Confidence 99665 46889999988 999999999977754321 44568899999
Q ss_pred CCCCEEEEEEccceeccccEEEEEecC-ceeeee---------------------------------------cccceee
Q 005140 565 PTGRYVATAVTSVHEMENGFNIWSFNG-KLLYRT---------------------------------------LKDHFFQ 604 (712)
Q Consensus 565 pdg~~l~t~s~~~~~~d~~v~iw~~~g-~~~~~~---------------------------------------~~~~i~~ 604 (712)
++++|++++. |+.|++|++.. ..+... |.+.|++
T Consensus 339 -~~~~l~s~~~-----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~ 412 (437)
T 3gre_A 339 -NDKILLTDEA-----TSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINS 412 (437)
T ss_dssp -TTEEEEEEGG-----GTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEE
T ss_pred -CceEEEecCC-----CCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceee
Confidence 7899999999 99999999863 322111 5678999
Q ss_pred eEEecC--CCCCCChhhHHHHH
Q 005140 605 FLWRPR--PPSFLTPEKEEEIA 624 (712)
Q Consensus 605 ~~w~p~--~~~l~s~~~d~~i~ 624 (712)
++|+++ +..|++++.|+.|+
T Consensus 413 i~~~~~~~~~~l~s~~~dG~I~ 434 (437)
T 3gre_A 413 ISTCEVDETPLLVACDNSGLIG 434 (437)
T ss_dssp EEEEESSSSEEEEEEETTSCEE
T ss_pred EeeeccCCceEEEEEcCCceEE
Confidence 999998 67899998887654
No 85
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.96 E-value=7.5e-27 Score=241.49 Aligned_cols=270 Identities=13% Similarity=0.236 Sum_probs=210.1
Q ss_pred CC-CeeEEEecCC-CCEEEEEcCCCCCCCcCCCccEEEEEEccCCc-----eeeeccCCCcccccCCCCCcCCCCcCeEE
Q 005140 253 HP-QVKLIDFSPG-EKYLVTYSSHEPSNPRDANRVVINIFDVRTGK-----VMRDFKGSADEFAVGGTGGVAGVSWPVFR 325 (712)
Q Consensus 253 ~~-~v~~i~~Spd-g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (712)
|. .|++|+|+|+ +++|||++.| ++|+|||+.+++ +.+.+.+|...+. +++
T Consensus 37 H~~~V~~v~~sp~~~~~l~S~s~D----------~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~-------------~~~ 93 (340)
T 4aow_A 37 HNGWVTQIATTPQFPDMILSASRD----------KTIIMWKLTRDETNYGIPQRALRGHSHFVS-------------DVV 93 (340)
T ss_dssp CSSCEEEEEECTTCTTEEEEEETT----------SCEEEEEECCSSSCSEEEEEEECCCSSCEE-------------EEE
T ss_pred ccCCEEEEEEeCCCCCEEEEEcCC----------CeEEEEECCCCCcccceeeEEEeCCCCCEE-------------EEE
Confidence 54 4999999998 6899999999 999999987654 4677888877764 799
Q ss_pred ecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceee
Q 005140 326 WGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ 404 (712)
Q Consensus 326 ~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (712)
|+| ++++|++++ |+.|++|+............+...+..+.++|++.+|++ ++.++..++| +..
T Consensus 94 ~s~-dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-----~s~d~~~~~~--d~~------- 158 (340)
T 4aow_A 94 ISS-DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVS-----GSRDKTIKLW--NTL------- 158 (340)
T ss_dssp ECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEE-----EETTSCEEEE--CTT-------
T ss_pred ECC-CCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCcccee-----ecCCCeEEEE--EeC-------
Confidence 999 999999999 999999999877766555555566778888888888887 5566655543 211
Q ss_pred eeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCC--CEEEEEE
Q 005140 405 KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG--HRFAVIH 482 (712)
Q Consensus 405 ~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g--~~l~~~~ 482 (712)
+.. .....+.+|...+..++|++++ .++++++
T Consensus 159 ----------------~~~------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~ 192 (340)
T 4aow_A 159 ----------------GVC------------------------------KYTVQDESHSEWVSCVRFSPNSSNPIIVSCG 192 (340)
T ss_dssp ----------------SCE------------------------------EEEECSSSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred ----------------CCc------------------------------eEEEEeccccCcccceEEccCCCCcEEEEEc
Confidence 100 0112234678889999998865 5677888
Q ss_pred cCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee-cccccee
Q 005140 483 GDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-AEHFMAT 559 (712)
Q Consensus 483 ~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~-~~~~~v~ 559 (712)
.|+ .|++|++.++. .+..+.++ .|++++|+|+|++|++++. ||.|++||+.+.+.+.. .++..++
T Consensus 193 ~d~---~i~i~d~~~~~------~~~~~~~h~~~v~~~~~s~~~~~l~s~s~---Dg~i~iwd~~~~~~~~~~~~~~~v~ 260 (340)
T 4aow_A 193 WDK---LVKVWNLANCK------LKTNHIGHTGYLNTVTVSPDGSLCASGGK---DGQAMLWDLNEGKHLYTLDGGDIIN 260 (340)
T ss_dssp TTS---CEEEEETTTTE------EEEEECCCSSCEEEEEECTTSSEEEEEET---TCEEEEEETTTTEEEEEEECSSCEE
T ss_pred CCC---EEEEEECCCCc------eeeEecCCCCcEEEEEECCCCCEEEEEeC---CCeEEEEEeccCceeeeecCCceEE
Confidence 888 89999997654 45555544 7999999999999999998 99999999998888765 4457899
Q ss_pred eEEECCCCCEEEEEEccceeccccEEEEEecCceee-e-----------ecccceeeeEEecCCCCCCChhhHHHHH
Q 005140 560 DVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLY-R-----------TLKDHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 560 ~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~-~-----------~~~~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
.++|+|++.++ +++. |+.|+||++.+..+. . .|...|++++|+|++++|++++.|+.|+
T Consensus 261 ~~~~~~~~~~~-~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~ 331 (340)
T 4aow_A 261 ALCFSPNRYWL-CAAT-----GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVR 331 (340)
T ss_dssp EEEECSSSSEE-EEEE-----TTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred eeecCCCCcee-eccC-----CCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEE
Confidence 99999988655 5556 799999998864332 1 2456899999999999999999988764
No 86
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.96 E-value=6e-29 Score=261.54 Aligned_cols=249 Identities=15% Similarity=0.177 Sum_probs=184.3
Q ss_pred eeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC--ceeeeccCCCcccccCCCCCcCCCCcCeEE
Q 005140 248 LMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG--KVMRDFKGSADEFAVGGTGGVAGVSWPVFR 325 (712)
Q Consensus 248 ~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (712)
+..++...|.+++|||+|++|++++.+ +.|+|||+.++ +.+..+.+|...+. +++
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d----------~~i~iw~~~~~~~~~~~~~~~h~~~v~-------------~~~ 62 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTAT----------NQVELYEQDGNGWKHARTFSDHDKIVT-------------CVD 62 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSS----------SCBCEEEEETTEEEECCCBCCCSSCEE-------------EEE
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCC----------CEEEEEEccCCceEEEEEEecCCceEE-------------EEE
Confidence 344555679999999999999999999 99999999988 78888988887764 799
Q ss_pred ecCCCCCEEEEec-CCeEEEEEcCCce---ecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccc
Q 005140 326 WGGGKDKYFAKLG-KNMISVYETESFT---LIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE 401 (712)
Q Consensus 326 ~s~~dg~~la~~~-d~~i~iwd~~~~~---~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~ 401 (712)
|+| ++++|++++ |+.|++|++.++. .......|...|.+++|+|++++|++ ++.++.+++|.++. .+.
T Consensus 63 ~s~-~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-----~~~d~~i~iwd~~~--~~~ 134 (377)
T 3dwl_C 63 WAP-KSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAV-----GSGARVISVCYFEQ--END 134 (377)
T ss_dssp ECT-TTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEE-----EESSSCEEECCC-------
T ss_pred EeC-CCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEE-----EecCCeEEEEEECC--ccc
Confidence 999 999999999 9999999999876 33333456677999999999988888 66666655543221 100
Q ss_pred eeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecC-CCCceEEEEEeeCCCEEEE
Q 005140 402 LRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDN-KNDKIIAFAWEPKGHRFAV 480 (712)
Q Consensus 402 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~-h~~~v~~~~~sp~g~~l~~ 480 (712)
......+.+ |...|.+++|+|++++|++
T Consensus 135 ---------------------------------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 163 (377)
T 3dwl_C 135 ---------------------------------------------------WWVSKHLKRPLRSTILSLDWHPNNVLLAA 163 (377)
T ss_dssp ---------------------------------------------------CCCCEEECSSCCSCEEEEEECTTSSEEEE
T ss_pred ---------------------------------------------------ceeeeEeecccCCCeEEEEEcCCCCEEEE
Confidence 000012334 7899999999999999999
Q ss_pred EEcCCCCCeEEEEEeecccccC------------ceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcc
Q 005140 481 IHGDSPRPDISFYSMRTAQHAG------------RVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL 547 (712)
Q Consensus 481 ~~~d~~~~~v~i~d~~~~~~~~------------~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~ 547 (712)
++.|+ .|++||+....... ....+..+. ...+.+++|+|+|++|++++. ||.|++||+.++
T Consensus 164 ~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---d~~i~iwd~~~~ 237 (377)
T 3dwl_C 164 GCADR---KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGH---DSSVTIAYPSAP 237 (377)
T ss_dssp EESSS---CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEET---TTEEC-CEECST
T ss_pred EeCCC---EEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeC---CCcEEEEECCCC
Confidence 99999 99999996322110 122444442 236999999999999999998 999999999987
Q ss_pred ee----ee--eccccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 548 ET----MA--TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 548 ~~----~~--~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
+. +. ..|...+++++|+|+|++|++++. + .+.+|+..
T Consensus 238 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----~-~~~~~~~~ 280 (377)
T 3dwl_C 238 EQPPRALITVKLSQLPLRSLLWANESAIVAAGYN-----Y-SPILLQGN 280 (377)
T ss_dssp TSCEEECCCEECSSSCEEEEEEEETTEEEEEESS-----S-SEEEECCC
T ss_pred CCcceeeEeecCCCCceEEEEEcCCCCEEEEEcC-----C-cEEEEEeC
Confidence 65 43 366788999999999999988876 4 44577654
No 87
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.5e-26 Score=245.34 Aligned_cols=272 Identities=18% Similarity=0.314 Sum_probs=207.8
Q ss_pred eEEEEECCeeEEEecCCCCCCCcccccC-CCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-CC-CeeEE
Q 005140 184 QFVIRSGTDTEVLWNDARHLKPEPVYKR-SYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLI 259 (712)
Q Consensus 184 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~-~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i 259 (712)
.+++...++.+.+|+. ..+.....+.. |...|++++|+|+|++||+++.+| |.||+.. +...+..+. |. .|.++
T Consensus 105 ~l~~~~~d~~v~lw~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~ 182 (401)
T 4aez_A 105 NVVAVALERNVYVWNA-DSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE-SQTKLRTMAGHQARVGCL 182 (401)
T ss_dssp SEEEEEETTEEEEEET-TTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEEEECCCSSCEEEE
T ss_pred CEEEEECCCeEEEeeC-CCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc-CCeEEEEecCCCCceEEE
Confidence 4667778889999998 44554444444 788999999999999999999999 8899998 777766663 44 49999
Q ss_pred EecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc-CCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec
Q 005140 260 DFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR-TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG 338 (712)
Q Consensus 260 ~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~ 338 (712)
+| ++++|++++.+ +.|++||+. .+..+..+.+|...+. +++|+| ++++|++++
T Consensus 183 ~~--~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~v~-------------~~~~~~-~~~~l~s~~ 236 (401)
T 4aez_A 183 SW--NRHVLSSGSRS----------GAIHHHDVRIANHQIGTLQGHSSEVC-------------GLAWRS-DGLQLASGG 236 (401)
T ss_dssp EE--ETTEEEEEETT----------SEEEEEETTSSSCEEEEEECCSSCEE-------------EEEECT-TSSEEEEEE
T ss_pred EE--CCCEEEEEcCC----------CCEEEEecccCcceeeEEcCCCCCee-------------EEEEcC-CCCEEEEEe
Confidence 99 56899999999 999999998 5667888888877663 799999 999999999
Q ss_pred -CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEE
Q 005140 339 -KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYW 417 (712)
Q Consensus 339 -d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (712)
|+.|++||+.++..+.....+...|.+++|+|++..+++. +++.....|.+|++.+.+.+
T Consensus 237 ~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~----~~gs~d~~i~i~d~~~~~~~--------------- 297 (401)
T 4aez_A 237 NDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLAT----GGGTMDKQIHFWNAATGARV--------------- 297 (401)
T ss_dssp TTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEE----ECCTTTCEEEEEETTTCCEE---------------
T ss_pred CCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEE----ecCCCCCEEEEEECCCCCEE---------------
Confidence 9999999999887776666677789999999987655542 33223444555554332110
Q ss_pred CcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEE--cCCCCCeEEEEEe
Q 005140 418 QSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIH--GDSPRPDISFYSM 495 (712)
Q Consensus 418 s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~--~d~~~~~v~i~d~ 495 (712)
..+ .|...|.+++|+|++++|++++ .++ .|++|++
T Consensus 298 ---------------------------------------~~~-~~~~~v~~~~~s~~~~~l~~~~g~~dg---~i~v~~~ 334 (401)
T 4aez_A 298 ---------------------------------------NTV-DAGSQVTSLIWSPHSKEIMSTHGFPDN---NLSIWSY 334 (401)
T ss_dssp ---------------------------------------EEE-ECSSCEEEEEECSSSSEEEEEECTTTC---EEEEEEE
T ss_pred ---------------------------------------EEE-eCCCcEEEEEECCCCCeEEEEeecCCC---cEEEEec
Confidence 011 2356799999999999999976 577 9999999
Q ss_pred ecccccCceeEEEEeCC--CceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee
Q 005140 496 RTAQHAGRVSKLTTLKG--KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT 552 (712)
Q Consensus 496 ~~~~~~~~~~~~~~~~~--~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~ 552 (712)
.++.. .....+.+ ..+.+++|+|+|++|++++. ||.|++|++.+++.+..
T Consensus 335 ~~~~~----~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~---dg~i~iw~~~~~~~~~~ 386 (401)
T 4aez_A 335 SSSGL----TKQVDIPAHDTRVLYSALSPDGRILSTAAS---DENLKFWRVYDGDHVKR 386 (401)
T ss_dssp ETTEE----EEEEEEECCSSCCCEEEECTTSSEEEEECT---TSEEEEEECCC------
T ss_pred CCccc----eeEEEecCCCCCEEEEEECCCCCEEEEEeC---CCcEEEEECCCCccccc
Confidence 76442 23333433 47899999999999999998 99999999998876654
No 88
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.96 E-value=1.2e-27 Score=257.76 Aligned_cols=305 Identities=14% Similarity=0.244 Sum_probs=201.8
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc-----------eeeeccCCC------------cccccC
Q 005140 255 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK-----------VMRDFKGSA------------DEFAVG 311 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~-----------~~~~~~~~~------------~~~~~~ 311 (712)
.|.+++|||+|++||+|+.+ +.|+|||+.++. .+..+.+|. ..+.
T Consensus 30 ~V~~v~~s~~g~~la~g~~d----------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~-- 97 (447)
T 3dw8_B 30 IISTVEFNHSGELLATGDKG----------GRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKIN-- 97 (447)
T ss_dssp SEEEEEECSSSSEEEEEETT----------SEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCC--
T ss_pred cEEEEEECCCCCEEEEEcCC----------CeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceE--
Confidence 49999999999999999999 999999998877 477888886 3332
Q ss_pred CCCCcCCCCcCeEEecCCCC--CEEEEec-CCeEEEEEcCCceecccc-c--ccccCeeeEEECCCCCeEEEEeecCCCC
Q 005140 312 GTGGVAGVSWPVFRWGGGKD--KYFAKLG-KNMISVYETESFTLIDKK-S--LKVENVMDFSWSPTDPIISLFVPELGGG 385 (712)
Q Consensus 312 ~~~~~~~~~~~~~~~s~~dg--~~la~~~-d~~i~iwd~~~~~~~~~~-~--~~~~~v~~~~~sp~~~~la~~~~~~~~~ 385 (712)
+++|+| ++ .+|++++ |+.|++|++.++...... . .+.+.+....-. ..-.+....
T Consensus 98 -----------~l~~~~-~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~------ 158 (447)
T 3dw8_B 98 -----------KIRWLP-QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTV-TTLRVPVFR------ 158 (447)
T ss_dssp -----------EEEECC-CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCC-CSCCCCEEE------
T ss_pred -----------EEEEcC-CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccc-cceEecccc------
Confidence 799999 88 6788888 999999999865432110 0 000000000000 000000000
Q ss_pred CCCeEEEEEecCCccceee-eeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEE-----Ee
Q 005140 386 NQPARVSLVQIPSKEELRQ-KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVL-----EL 459 (712)
Q Consensus 386 ~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-----~l 459 (712)
... +.... ..... ...+......+.|+|+|++|+++ .++. +.+|++...+.....+ .+
T Consensus 159 --~~~-~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~---------i~iwd~~~~~~~~~~~~~~~~~~ 222 (447)
T 3dw8_B 159 --PMD-LMVEA---SPRRIFANAHTYHINSISINSDYETYLSA-DDLR---------INLWHLEITDRSFNIVDIKPANM 222 (447)
T ss_dssp --EEE-EEEEE---EEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSE---------EEEEETTEEEEEEEEEECCCSSG
T ss_pred --chh-eeeec---cceEEeccCCCcceEEEEEcCCCCEEEEe-CCCe---------EEEEECCCCCceeeeeecccccc
Confidence 000 00000 00000 11234445567888888888887 5655 6777765322222212 35
Q ss_pred cCCCCceEEEEEeeCC-CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--------------ceeEEEEccCC
Q 005140 460 DNKNDKIIAFAWEPKG-HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--------------QANALFWSPSG 524 (712)
Q Consensus 460 ~~h~~~v~~~~~sp~g-~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--------------~v~~l~~spdg 524 (712)
.+|...|.+++|+|++ ++|++++.|+ .|++||++++..... .+..+..+ .+.+++|+|+|
T Consensus 223 ~~~~~~v~~~~~~p~~~~~l~s~~~dg---~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g 297 (447)
T 3dw8_B 223 EELTEVITAAEFHPNSCNTFVYSSSKG---TIRLCDMRASALCDR--HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG 297 (447)
T ss_dssp GGCCCCEEEEEECSSCTTEEEEEETTS---CEEEEETTTCSSSCT--TCEEECCC-----CCHHHHHTTCEEEEEECTTS
T ss_pred cccCcceEEEEECCCCCcEEEEEeCCC---eEEEEECcCCccccc--eeeEeccCCCccccccccccCceEEEEEECCCC
Confidence 5889999999999998 9999999999 999999977552100 12333322 78999999999
Q ss_pred CeEEEEeccCCCceEEEEECCc-ceeeee--ccccc---------------eeeEEECCCCCEEEEEEccceeccccEEE
Q 005140 525 RFIVLAGLKGFNGQLEFYNVDE-LETMAT--AEHFM---------------ATDVEWDPTGRYVATAVTSVHEMENGFNI 586 (712)
Q Consensus 525 ~~l~~~~~~~~dg~v~iwd~~~-~~~~~~--~~~~~---------------v~~~~~spdg~~l~t~s~~~~~~d~~v~i 586 (712)
++|++++ ++.|++||+.. ++.+.. .|... +..++|+|+|++|++++. |+.|+|
T Consensus 298 ~~l~~~~----~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~-----dg~v~i 368 (447)
T 3dw8_B 298 RYMMTRD----YLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSY-----NNFFRM 368 (447)
T ss_dssp SEEEEEE----SSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECS-----TTEEEE
T ss_pred CEEEEee----CCeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEecc-----CCEEEE
Confidence 9999887 59999999986 665544 22211 334999999999999999 999999
Q ss_pred EEecCceeeee-----------------------------------cccceeeeEEecCCCCCCChhhH
Q 005140 587 WSFNGKLLYRT-----------------------------------LKDHFFQFLWRPRPPSFLTPEKE 620 (712)
Q Consensus 587 w~~~g~~~~~~-----------------------------------~~~~i~~~~w~p~~~~l~s~~~d 620 (712)
|++........ ....+..++|+|++..|++++.+
T Consensus 369 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~ 437 (447)
T 3dw8_B 369 FDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTN 437 (447)
T ss_dssp EETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSS
T ss_pred EEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecc
Confidence 99874432211 12468889999999999877653
No 89
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.96 E-value=2.9e-27 Score=247.01 Aligned_cols=259 Identities=11% Similarity=0.082 Sum_probs=184.3
Q ss_pred eEEEecCCCCCCCc---------ccccCCCcccceEEEcCCCcEEEEEec-----------Cc-eEEeecccCcceeeee
Q 005140 193 TEVLWNDARHLKPE---------PVYKRSYWTESFVQWSPLGTYLATVHR-----------QG-AAVWGGANTFNRLMRY 251 (712)
Q Consensus 193 ~~~~w~~~~~~~~~---------~~~~~~~~~v~~v~~Spdg~~lat~~~-----------~~-i~iw~~~~~~~~~~~~ 251 (712)
.+.+|+........ ..+.+|...+.++++ ++..++++.. ++ +++|+.......+...
T Consensus 44 ~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~--~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~ 121 (365)
T 4h5i_A 44 KLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA--SKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFL 121 (365)
T ss_dssp EEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE--ETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEE
T ss_pred EEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe--CCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEe
Confidence 47799874333221 235677778877765 4667777643 34 7788876222222111
Q ss_pred ------c---CC-CeeEEEecCCCCEEEEEc--CCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCC
Q 005140 252 ------A---HP-QVKLIDFSPGEKYLVTYS--SHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGV 319 (712)
Q Consensus 252 ------~---~~-~v~~i~~Spdg~~l~t~s--~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 319 (712)
. +. .+.+++|||||++|++++ .| ++|+|||+.+++.+..+..+ ..+.
T Consensus 122 ~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d----------~~i~iwd~~~~~~~~~~~~~-~~V~---------- 180 (365)
T 4h5i_A 122 TSVDFDASTNADDYTKLVYISREGTVAAIASSKVP----------AIMRIIDPSDLTEKFEIETR-GEVK---------- 180 (365)
T ss_dssp EEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSS----------CEEEEEETTTTEEEEEEECS-SCCC----------
T ss_pred eeeceeecCCcccCEEEEEEcCCCCEEEEEECCCC----------CEEEEeECCCCcEEEEeCCC-CceE----------
Confidence 0 11 288999999999987655 56 89999999999998888644 3332
Q ss_pred CcCeEEecCCCCCEEEEecCCeEEEEEcCCceecccc--cccccCeeeEEECCCCCeEEEEeecCCCCCCC--eEEEEEe
Q 005140 320 SWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKK--SLKVENVMDFSWSPTDPIISLFVPELGGGNQP--ARVSLVQ 395 (712)
Q Consensus 320 ~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~--~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~--~~i~~~~ 395 (712)
+++||| ||++|++++++.+.+|+..++..+... ..|...|.+++|+|+++.+++ ++.++. ..++.|+
T Consensus 181 ---~v~fsp-dg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~-----~s~d~~~~~~i~~~~ 251 (365)
T 4h5i_A 181 ---DLHFST-DGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIA-----ASLKKGKGIVLTKIS 251 (365)
T ss_dssp ---EEEECT-TSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEE-----EEESSSCCEEEEEEE
T ss_pred ---EEEEcc-CCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEE-----EecCCcceeEEeecc
Confidence 799999 999999999888888888877654332 234556899999999998887 333332 3344443
Q ss_pred cCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCC
Q 005140 396 IPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKG 475 (712)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g 475 (712)
...... .......+.+|...|++++|+|+|
T Consensus 252 ~~~~~~--------------------------------------------------~~~~~~~~~~~~~~V~~~~~Spdg 281 (365)
T 4h5i_A 252 IKSGNT--------------------------------------------------SVLRSKQVTNRFKGITSMDVDMKG 281 (365)
T ss_dssp EETTEE--------------------------------------------------EEEEEEEEESSCSCEEEEEECTTS
T ss_pred ccccee--------------------------------------------------cceeeeeecCCCCCeEeEEECCCC
Confidence 221100 001113455788999999999999
Q ss_pred CEEEEEEcCCCCCeEEEEEeecccccCceeEEEEe-CCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 476 HRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL-KGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 476 ~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~-~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
++||+++.|+ .|+|||+.++. ++..+ .+| .|++++|||||++|++++. |++|+||++.
T Consensus 282 ~~lasgs~D~---~V~iwd~~~~~------~~~~~~~gH~~~V~~v~fSpdg~~laS~S~---D~tvrvw~ip 342 (365)
T 4h5i_A 282 ELAVLASNDN---SIALVKLKDLS------MSKIFKQAHSFAITEVTISPDSTYVASVSA---ANTIHIIKLP 342 (365)
T ss_dssp CEEEEEETTS---CEEEEETTTTE------EEEEETTSSSSCEEEEEECTTSCEEEEEET---TSEEEEEECC
T ss_pred CceEEEcCCC---EEEEEECCCCc------EEEEecCcccCCEEEEEECCCCCEEEEEeC---CCeEEEEEcC
Confidence 9999999999 99999997654 56554 444 7999999999999999998 9999999986
No 90
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.95 E-value=3.2e-27 Score=241.73 Aligned_cols=241 Identities=17% Similarity=0.260 Sum_probs=184.3
Q ss_pred CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc--eeeeccCCCcccccCCCCCcCCCCcCeEEecCCC
Q 005140 253 HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK--VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK 330 (712)
Q Consensus 253 ~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d 330 (712)
...|.+++|+|+|++||+++.| ++|+|||+.++. .+..+.+|...+. +++|++ +
T Consensus 13 ~~~V~~v~~s~~g~~lasgs~D----------~~v~lwd~~~~~~~~~~~l~gH~~~V~-------------~v~~~~-~ 68 (316)
T 3bg1_A 13 EDMIHDAQMDYYGTRLATCSSD----------RSVKIFDVRNGGQILIADLRGHEGPVW-------------QVAWAH-P 68 (316)
T ss_dssp -CCEEEEEECGGGCEEEEEETT----------TEEEEEEEETTEEEEEEEEECCSSCEE-------------EEEECC-G
T ss_pred cCeEEEeeEcCCCCEEEEEeCC----------CeEEEEEecCCCcEEEEEEcCCCccEE-------------EEEeCC-C
Confidence 3459999999999999999999 999999998875 4678888987763 689986 4
Q ss_pred --CCEEEEec-CCeEEEEEcCCce--ecccccccccCeeeEEECCC--CCeEEEEeecCCCCCCCeEEEEEecCCcc-ce
Q 005140 331 --DKYFAKLG-KNMISVYETESFT--LIDKKSLKVENVMDFSWSPT--DPIISLFVPELGGGNQPARVSLVQIPSKE-EL 402 (712)
Q Consensus 331 --g~~la~~~-d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~--~~~la~~~~~~~~~~~~~~i~~~~~~~~~-~~ 402 (712)
+++|++++ |++|++||+.++. .+.....|...|.+++|+|+ +.+|++ ++.|+.+++|.+...... ..
T Consensus 69 ~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~las-----gs~D~~i~lwd~~~~~~~~~~ 143 (316)
T 3bg1_A 69 MYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILAC-----GSSDGAISLLTYTGEGQWEVK 143 (316)
T ss_dssp GGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEE-----ECSSSCEEEEEECSSSCEEEC
T ss_pred CCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEE-----EcCCCCEEEEecCCCCCccee
Confidence 78999999 9999999998764 23333456778999999998 788888 778888777765432100 00
Q ss_pred eeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeC--------
Q 005140 403 RQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK-------- 474 (712)
Q Consensus 403 ~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~-------- 474 (712)
. .+.+|...|.+++|+|+
T Consensus 144 ~------------------------------------------------------~~~~h~~~v~~~~~~~~~~~~~~~~ 169 (316)
T 3bg1_A 144 K------------------------------------------------------INNAHTIGCNAVSWAPAVVPGSLID 169 (316)
T ss_dssp C------------------------------------------------------BTTSSSSCBCCCEECCCCCC-----
T ss_pred e------------------------------------------------------eeccccCCcceEEEccccCCccccc
Confidence 0 11234445555555554
Q ss_pred ---------CCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCC----CeEEEEeccCCCceE
Q 005140 475 ---------GHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSG----RFIVLAGLKGFNGQL 539 (712)
Q Consensus 475 ---------g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg----~~l~~~~~~~~dg~v 539 (712)
+++|++++.|+ .|++|++.... ....+..+.+| .|.+++|+|++ ++|++++. |+.|
T Consensus 170 ~~~~~~~~~~~~l~sgs~D~---~v~lWd~~~~~---~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~---D~~v 240 (316)
T 3bg1_A 170 HPSGQKPNYIKRFASGGCDN---LIKLWKEEEDG---QWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQ---DGRV 240 (316)
T ss_dssp -CCSCCCCCCCBEECCBTTS---BCCEEEECTTS---CEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEET---TCEE
T ss_pred cccccCccccceEEEecCCC---eEEEEEeCCCC---ccceeeecccCCCceEEEEecCCCCCCCceEEEEcC---CCeE
Confidence 57899999999 99999996432 12355566655 69999999987 88999998 9999
Q ss_pred EEEECCcc---e---eeeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 540 EFYNVDEL---E---TMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 540 ~iwd~~~~---~---~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
++|++.+. . .+...|...|.+++|+|+|++||+++. |+.++||+..
T Consensus 241 ~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~-----D~~v~lw~~~ 292 (316)
T 3bg1_A 241 FIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGG-----DNKVTLWKES 292 (316)
T ss_dssp EEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEES-----SSCEEEEEEC
T ss_pred EEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcC-----CCeEEEEEEC
Confidence 99998752 1 122346688999999999999999999 9999999975
No 91
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.95 E-value=2.6e-26 Score=248.66 Aligned_cols=294 Identities=13% Similarity=0.204 Sum_probs=228.7
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEE
Q 005140 256 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA 335 (712)
Q Consensus 256 v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la 335 (712)
+.++.+ ++++|++++.| ++|++||+.+++.+..+.+|...+. +++|++ ++ +|+
T Consensus 125 ~~~~~~--~~~~l~sgs~d----------g~i~vwd~~~~~~~~~~~~h~~~V~-------------~l~~~~-~~-~l~ 177 (464)
T 3v7d_B 125 ITCLQF--EDNYVITGADD----------KMIRVYDSINKKFLLQLSGHDGGVW-------------ALKYAH-GG-ILV 177 (464)
T ss_dssp EEEEEE--ETTEEEEEETT----------SCEEEEETTTTEEEEEECCCSSCEE-------------EEEECS-TT-EEE
T ss_pred EEEEEE--CCCEEEEEcCC----------CcEEEEECCCCcEEEEEeCCCcCEE-------------EEEEcC-CC-EEE
Confidence 455555 67899999999 9999999999999999999988774 799999 88 777
Q ss_pred Eec-CCeEEEEEcCCceecccccccccCeeeEEEC--CCCCeEEEEeecCCCCCCCeEEEEEecCCccc-----------
Q 005140 336 KLG-KNMISVYETESFTLIDKKSLKVENVMDFSWS--PTDPIISLFVPELGGGNQPARVSLVQIPSKEE----------- 401 (712)
Q Consensus 336 ~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s--p~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~----------- 401 (712)
+++ |++|++|++.++..+.....|...|.+++|+ |++.+|++ ++.++.+++|.+.......
T Consensus 178 s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s-----~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 252 (464)
T 3v7d_B 178 SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT-----GSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252 (464)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEE-----EETTSCEEEEECCCCCCC------CCSSEE
T ss_pred EEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEE-----EcCCCcEEEeeCCCCcccccccccCCcceE
Confidence 777 9999999999998877777788889999998 57788888 7788877776654332110
Q ss_pred ----------eeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEE
Q 005140 402 ----------LRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAW 471 (712)
Q Consensus 402 ----------~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~ 471 (712)
+.....+.... ..+++++.++++++.++. +.+|++... .....+.+|...|.+++|
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~~~~~d~~---------i~vwd~~~~---~~~~~~~~~~~~v~~~~~ 318 (464)
T 3v7d_B 253 FHTPEENPYFVGVLRGHMASV--RTVSGHGNIVVSGSYDNT---------LIVWDVAQM---KCLYILSGHTDRIYSTIY 318 (464)
T ss_dssp ESCGGGCTTEEEEECCCSSCE--EEEEEETTEEEEEETTSC---------EEEEETTTT---EEEEEECCCSSCEEEEEE
T ss_pred eeccCCCeEEEEEccCccceE--EEEcCCCCEEEEEeCCCe---------EEEEECCCC---cEEEEecCCCCCEEEEEE
Confidence 11111111122 245788999999998877 889987642 223556789999999999
Q ss_pred eeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCccee
Q 005140 472 EPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET 549 (712)
Q Consensus 472 sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~ 549 (712)
+|+++++++++.|+ .|++||+.++. .+..+.++ .+.+++|+ +++|++++. ||.|++||+.++..
T Consensus 319 ~~~~~~l~sg~~dg---~i~vwd~~~~~------~~~~~~~h~~~v~~~~~~--~~~l~s~s~---dg~v~vwd~~~~~~ 384 (464)
T 3v7d_B 319 DHERKRCISASMDT---TIRIWDLENGE------LMYTLQGHTALVGLLRLS--DKFLVSAAA---DGSIRGWDANDYSR 384 (464)
T ss_dssp ETTTTEEEEEETTS---CEEEEETTTTE------EEEEECCCSSCEEEEEEC--SSEEEEEET---TSEEEEEETTTCCE
T ss_pred cCCCCEEEEEeCCC---cEEEEECCCCc------EEEEEeCCCCcEEEEEEc--CCEEEEEeC---CCcEEEEECCCCce
Confidence 99999999999999 99999997654 56666544 68888887 589999998 99999999998776
Q ss_pred eeec-cccceeeEEECCCCCEEEEEEccceeccccEEEEEec-Cceeee---ecccceeeeEEecCCCCCCCh
Q 005140 550 MATA-EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYR---TLKDHFFQFLWRPRPPSFLTP 617 (712)
Q Consensus 550 ~~~~-~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~---~~~~~i~~~~w~p~~~~l~s~ 617 (712)
.... +...+..++|+|+|++|++++. +.++||++. |..+.. .+...+++++|+ +..++++
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~l~~~~d------g~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~ 449 (464)
T 3v7d_B 385 KFSYHHTNLSAITTFYVSDNILVSGSE------NQFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAA 449 (464)
T ss_dssp EEEEECTTCCCEEEEEECSSEEEEEET------TEEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEE
T ss_pred eeeecCCCCccEEEEEeCCCEEEEecC------CeEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEEE
Confidence 6654 4466778899999999988774 899999987 555543 256789999997 3444433
No 92
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.6e-27 Score=248.31 Aligned_cols=291 Identities=9% Similarity=0.043 Sum_probs=213.3
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCE
Q 005140 254 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 333 (712)
Q Consensus 254 ~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ 333 (712)
.+|.+++|||||++|||++.| ++|+ |...++ .+.+|...+ | +++|+| +|
T Consensus 16 ~~v~sv~~SpDG~~iASas~D----------~TV~--d~~~~~---~l~gh~~~v------------~-~V~FsP-dg-- 64 (588)
T 2j04_A 16 DWKNNLTWARDGTLYLTTFPD----------ISIG--QPKYAK---DINCNSKNL------------F-HVKEFP-LE-- 64 (588)
T ss_dssp SSSCCEEECTTSCEEEECSSS----------EEEE--EECCCS---CCSSBGGGT------------E-EEEEEC-CC--
T ss_pred ccEEEEEECCCCCEEEEEcCC----------ceee--cccccc---eecCCCccE------------E-EEEECC-CC--
Confidence 459999999999999999999 9998 755554 446777766 4 699999 88
Q ss_pred EEEecCCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeee---
Q 005140 334 FAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV--- 410 (712)
Q Consensus 334 la~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--- 410 (712)
.++.+.+|+......+ .. .+.+.|.+++|||+|..||+ ++.++.++||. ... .+.... +..
T Consensus 65 ----~~~~~~~~~~~~~~~~-~~-~~~~~V~~vawSPdG~~LAs-----~s~dg~V~iwd--~~~--~l~~l~-~~~~~~ 128 (588)
T 2j04_A 65 ----FENKLDFELAQQNGLL-NS-QPVCYPRVCKPSPIDDWMAV-----LSNNGNVSVFK--DNK--MLTNLD-SKGNLS 128 (588)
T ss_dssp ----CCCTTTTSCCCSSCSS-TT-SCSCCEEEEEECSSSSCEEE-----EETTSCEEEEE--TTE--EEEECC-CSSCST
T ss_pred ----CcceEEEEeCCCceEe-ec-CCCCcEEEEEECCCCCEEEE-----EeCCCcEEEEe--CCc--eeeecc-CCCccc
Confidence 4555555554422222 11 23567999999999999999 77888877775 222 222212 221
Q ss_pred --cceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCc--c--eeEEEe----cCCCCceEEEEEeeCCCEEEE
Q 005140 411 --SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDI--P--IEVLEL----DNKNDKIIAFAWEPKGHRFAV 480 (712)
Q Consensus 411 --~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~--~--~~~~~l----~~h~~~v~~~~~sp~g~~l~~ 480 (712)
....++|||+|++|++++.+++ +.+|++..... + +....+ .+|...|.+++|+|+| +++
T Consensus 129 ~~sv~svafSPDG~~LAsgs~DGt---------VkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laa 197 (588)
T 2j04_A 129 SRTYHCFEWNPIESSIVVGNEDGE---------LQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVA 197 (588)
T ss_dssp TTCEEEEEECSSSSCEEEEETTSE---------EEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEE
T ss_pred cccEEEEEEcCCCCEEEEEcCCCE---------EEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEE
Confidence 3457899999999999999988 89999887532 1 122333 5788899999999999 888
Q ss_pred EEcCCCCCeEEEEEeecccccCceeEEEEe---CCCceeEEEEccCCCeEEEEeccCCCceEEEEECCccee-eee-ccc
Q 005140 481 IHGDSPRPDISFYSMRTAQHAGRVSKLTTL---KGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET-MAT-AEH 555 (712)
Q Consensus 481 ~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~---~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~-~~~-~~~ 555 (712)
++.|+ .|++|++.++... ....++ +...|.+++|+ |+.|++++ ++.|++||+.+++. ... +|.
T Consensus 198 ss~D~---tVrlWd~~~~~~~---~~~~tL~~~h~~~V~svaFs--g~~LASa~----~~tIkLWd~~~~~~~~~~~gh~ 265 (588)
T 2j04_A 198 ALSNN---SVFSMTVSASSHQ---PVSRMIQNASRRKITDLKIV--DYKVVLTC----PGYVHKIDLKNYSISSLKTGSL 265 (588)
T ss_dssp EETTC---CEEEECCCSSSSC---CCEEEEECCCSSCCCCEEEE--TTEEEEEC----SSEEEEEETTTTEEEEEECSCC
T ss_pred EeCCC---eEEEEECCCCccc---cceeeecccccCcEEEEEEE--CCEEEEEe----CCeEEEEECCCCeEEEEEcCCC
Confidence 88888 9999999765421 112233 23469999999 68998886 68999999998777 444 778
Q ss_pred cceeeEEE--CCCCCEEEEEEccceeccccEEEEEec-------C-----------------ceeeee-cccceeeeEEe
Q 005140 556 FMATDVEW--DPTGRYVATAVTSVHEMENGFNIWSFN-------G-----------------KLLYRT-LKDHFFQFLWR 608 (712)
Q Consensus 556 ~~v~~~~~--spdg~~l~t~s~~~~~~d~~v~iw~~~-------g-----------------~~~~~~-~~~~i~~~~w~ 608 (712)
..+.+++| +|||..|+++.. +|. ++|.++ + +.+... ....|++++++
T Consensus 266 ~~V~~va~~~s~d~~~La~a~e-----dG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~S 339 (588)
T 2j04_A 266 ENFHIIPLNHEKESTILLMSNK-----TSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLS 339 (588)
T ss_dssp SCCCEEEETTCSSCEEEEECSS-----CEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEEC
T ss_pred ceEEEEEeeeCCCCCEEEEEcC-----CCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEEC
Confidence 89999999 999999999998 777 888753 1 111100 11248889999
Q ss_pred cCCCCCCChhhH
Q 005140 609 PRPPSFLTPEKE 620 (712)
Q Consensus 609 p~~~~l~s~~~d 620 (712)
|+|+.+++++.-
T Consensus 340 PdG~~lA~~~~i 351 (588)
T 2j04_A 340 PDGYSIAIVYDM 351 (588)
T ss_dssp TTSSEEEEEEEE
T ss_pred CCCCEEEEEEec
Confidence 999999988764
No 93
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.5e-27 Score=255.36 Aligned_cols=304 Identities=8% Similarity=0.057 Sum_probs=206.6
Q ss_pred eEEEEECCeeEEEecCCCCCCCc----ccccCCCcccceEEEcCC------CcEEEEEecCc-eEEeecccCcce-----
Q 005140 184 QFVIRSGTDTEVLWNDARHLKPE----PVYKRSYWTESFVQWSPL------GTYLATVHRQG-AAVWGGANTFNR----- 247 (712)
Q Consensus 184 ~~~~~~~~~~~~~w~~~~~~~~~----~~~~~~~~~v~~v~~Spd------g~~lat~~~~~-i~iw~~~~~~~~----- 247 (712)
.|+..+.++++.+|+.. ..+.. ..+.+|...|.+++|+|+ |.+||+++.|+ |+||++. ....
T Consensus 175 ~laS~s~D~tI~iWd~~-~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~-~~~~~~~~~ 252 (524)
T 2j04_B 175 MFDKEKHSSCIQIFKMN-TSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEII-DNATDVHVF 252 (524)
T ss_dssp -------CEEEEEEEEE-TTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECC-CCSSSSSEE
T ss_pred hhccCCCCceEEEEEcc-CCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcC-CCccccccc
Confidence 34556678899999983 33321 235677888999999997 67999999999 8899997 3321
Q ss_pred ------eeee--cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc-eeeeccCCCcccccCCCCCcCC
Q 005140 248 ------LMRY--AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK-VMRDFKGSADEFAVGGTGGVAG 318 (712)
Q Consensus 248 ------~~~~--~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~-~~~~~~~~~~~~~~~~~~~~~~ 318 (712)
...+ +...|.+++|+|++ +|++|+.| ++|++||+.++. +...+.+|...+.
T Consensus 253 ~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~D----------gtV~lWD~~~~~~~~~~~~~H~~~V~--------- 312 (524)
T 2j04_B 253 KMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKN----------GFVAEFDLTDPEVPSFYDQVHDSYIL--------- 312 (524)
T ss_dssp ECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETT----------SEEEEEETTBCSSCSEEEECSSSCEE---------
T ss_pred eeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCC----------CEEEEEECCCCCCceEEeecccccEE---------
Confidence 1122 23359999999865 89999999 999999998774 4456778877663
Q ss_pred CCcCeE--EecCCCC-CEEEEec-CCeEEEEEcCCceeccccccccc--CeeeEEECCCCCeEEEEeecCCCCCCCeEEE
Q 005140 319 VSWPVF--RWGGGKD-KYFAKLG-KNMISVYETESFTLIDKKSLKVE--NVMDFSWSPTDPIISLFVPELGGGNQPARVS 392 (712)
Q Consensus 319 ~~~~~~--~~s~~dg-~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~--~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~ 392 (712)
++ .|++ ++ .+||+++ |++|+|||+.+++.+.....+.. .|.+++|+|++..+++ ++.++.+ .
T Consensus 313 ----sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s-----~~~d~tv--~ 380 (524)
T 2j04_B 313 ----SVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIY-----SDGASSL--R 380 (524)
T ss_dssp ----EEEEECCT-TSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEE-----ECSSSEE--E
T ss_pred ----EEEEEcCC-CCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEE-----eCCCCcE--E
Confidence 45 6788 88 8999999 99999999998776544444443 4789999999999887 6666654 5
Q ss_pred EEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeE-EEecCCCCceEEEEE
Q 005140 393 LVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEV-LELDNKNDKIIAFAW 471 (712)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~l~~h~~~v~~~~~ 471 (712)
+|++.....+.....+......++|+|+|++|++++.|++ +.+|++...-..... ..-..+...+.+++|
T Consensus 381 lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgt---------v~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~ 451 (524)
T 2j04_B 381 AVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGS---------LIITNAARRLLHGIKNSSATQKSLRLWKWDY 451 (524)
T ss_dssp EEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTE---------EECCBSCSSTTTCC------CCCCEEEECBC
T ss_pred EEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCE---------EEEEechHhhccccccCccceeeeEEEEecc
Confidence 5666665554444446667778899999999999999988 677775432111000 000011235779999
Q ss_pred eeCCCEEEEEEcCCCCCeEEEEEee-cccccCceeEEEEeCC--CceeEEEEccCCC---eEEEEeccCCCceEEEEECC
Q 005140 472 EPKGHRFAVIHGDSPRPDISFYSMR-TAQHAGRVSKLTTLKG--KQANALFWSPSGR---FIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 472 sp~g~~l~~~~~d~~~~~v~i~d~~-~~~~~~~~~~~~~~~~--~~v~~l~~spdg~---~l~~~~~~~~dg~v~iwd~~ 545 (712)
+|+|+.+.. .+. +.+|... ++. .+..+.+ ..|++++|||++. .+++|+. +|.|+||++.
T Consensus 452 sp~g~~~~~--~~~----~~~~~~~~~g~------~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~---~g~vrlw~l~ 516 (524)
T 2j04_B 452 SIKDDKYRI--DSS----YEVYPLTVNDV------SKAKIDAHGINITCTKWNETSAGGKCYAFSNS---AGLLTLEYLS 516 (524)
T ss_dssp CSSSCEEEE--CCC----CCCCC-------------------CCCSCCCEEECCSTTTTTEEEEECT---TSEEEEEECS
T ss_pred CCCCCeEEc--cCC----ceecccccCCc------ceeeecCCCceEEEEECCCCCCccHHHHhhcc---CceEEEEEcc
Confidence 999985532 221 2233322 111 3344444 3799999999964 8999887 9999999987
No 94
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=1.4e-26 Score=242.00 Aligned_cols=294 Identities=13% Similarity=0.151 Sum_probs=207.0
Q ss_pred CCCCCcccccCCCcccceEEEcCC---CcEEEEEecCc-eEEeecccCccee-eee-cCC-CeeEEEecCCCCEEEEEcC
Q 005140 201 RHLKPEPVYKRSYWTESFVQWSPL---GTYLATVHRQG-AAVWGGANTFNRL-MRY-AHP-QVKLIDFSPGEKYLVTYSS 273 (712)
Q Consensus 201 ~~~~~~~~~~~~~~~v~~v~~Spd---g~~lat~~~~~-i~iw~~~~~~~~~-~~~-~~~-~v~~i~~Spdg~~l~t~s~ 273 (712)
........+.+|...|++++|+|+ |++||+++.++ |+||+..+....+ ..+ .|. .|.+++|+|++++|++++.
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 106 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC 106 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC
Confidence 455667788999999999999999 69999999999 8899998324443 333 344 5999999999999999999
Q ss_pred CCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEe--cCCCCCEEEEec-CCeEEEEEcCCc
Q 005140 274 HEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRW--GGGKDKYFAKLG-KNMISVYETESF 350 (712)
Q Consensus 274 d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~dg~~la~~~-d~~i~iwd~~~~ 350 (712)
+ +.|++||+.+++.+. +..|...+. +++| ++ ++.+|++++ |+.|++||+.++
T Consensus 107 d----------g~v~iwd~~~~~~~~-~~~~~~~v~-------------~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~ 161 (368)
T 3mmy_A 107 D----------KTAKMWDLSSNQAIQ-IAQHDAPVK-------------TIHWIKAP-NYSCVMTGSWDKTLKFWDTRSS 161 (368)
T ss_dssp T----------SEEEEEETTTTEEEE-EEECSSCEE-------------EEEEEECS-SCEEEEEEETTSEEEEECSSCS
T ss_pred C----------CcEEEEEcCCCCcee-eccccCceE-------------EEEEEeCC-CCCEEEEccCCCcEEEEECCCC
Confidence 9 999999999888766 444555542 6899 89 999999998 999999999988
Q ss_pred eecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeee--eeeeecceeEEECcCC--CEEEE
Q 005140 351 TLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK--NLFSVSDCKMYWQSSG--DYLAV 426 (712)
Q Consensus 351 ~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~g--~~l~~ 426 (712)
+.+.....+ ..+.++.+.++ .+++ ++.++.+.+|.+........... .........+.+.+.. ..+++
T Consensus 162 ~~~~~~~~~-~~~~~~~~~~~--~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (368)
T 3mmy_A 162 NPMMVLQLP-ERCYCADVIYP--MAVV-----ATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFAL 233 (368)
T ss_dssp SCSEEEECS-SCEEEEEEETT--EEEE-----EEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEE
T ss_pred cEEEEEecC-CCceEEEecCC--eeEE-----EeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEE
Confidence 776554433 34566666644 5555 33556655555433222111111 1122222233333322 22888
Q ss_pred EEcccccccccccccEEEEEEecCCcceeEEEecCCCC------------ceEEEEEeeCCCEEEEEEcCCCCCeEEEEE
Q 005140 427 KVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKND------------KIIAFAWEPKGHRFAVIHGDSPRPDISFYS 494 (712)
Q Consensus 427 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~------------~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d 494 (712)
++.++. +.+|++...........+.+|.. .|.+++|+|++++|++++.|+ .|++||
T Consensus 234 ~~~dg~---------i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg---~i~iwd 301 (368)
T 3mmy_A 234 GSIEGR---------VAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDG---RFSFWD 301 (368)
T ss_dssp EETTSE---------EEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTS---CEEEEE
T ss_pred ecCCCc---------EEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCC---eEEEEE
Confidence 888776 78898876543222334445554 799999999999999999999 999999
Q ss_pred eecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 495 MRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
+.++. .+..+..+ ++.+++|+|+|++|++++.......+.+|+..
T Consensus 302 ~~~~~------~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~ 348 (368)
T 3mmy_A 302 KDART------KLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQ 348 (368)
T ss_dssp TTTTE------EEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTT
T ss_pred CCCCc------EEEEecCCCCCceEEEECCCCCeEEEEecccccccccccCCC
Confidence 97654 56666543 79999999999999999872222234444444
No 95
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=9.1e-26 Score=236.98 Aligned_cols=254 Identities=14% Similarity=0.152 Sum_probs=199.2
Q ss_pred CCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeeccc-Ccceeeee-cCC-CeeEEEecCC--CCEEEEEcCCCCC
Q 005140 204 KPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGAN-TFNRLMRY-AHP-QVKLIDFSPG--EKYLVTYSSHEPS 277 (712)
Q Consensus 204 ~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~-~~~~~~~~-~~~-~v~~i~~Spd--g~~l~t~s~d~~~ 277 (712)
.....+.+|...|++++|||+|++||+++.++ |+||+..+ +...+..+ .|. .|.+++|+|+ +++|++++.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d--- 78 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD--- 78 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT---
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC---
Confidence 34567889999999999999999999999998 88999862 23334444 244 5999999988 9999999999
Q ss_pred CCcCCCccEEEEEEccCCc--eeeeccCCCcccccCCCCCcCCCCcCeEEecCCC--CCEEEEec-CCeEEEEEcCCcee
Q 005140 278 NPRDANRVVINIFDVRTGK--VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK--DKYFAKLG-KNMISVYETESFTL 352 (712)
Q Consensus 278 ~~~~~~~~~I~iwd~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d--g~~la~~~-d~~i~iwd~~~~~~ 352 (712)
+.|++||+.+++ .+..+..|...+. +++|+| + +.+|++++ |+.|++|++.++..
T Consensus 79 -------g~v~iwd~~~~~~~~~~~~~~~~~~v~-------------~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~ 137 (379)
T 3jrp_A 79 -------GKVLIWKEENGRWSQIAVHAVHSASVN-------------SVQWAP-HEYGPLLLVASSDGKVSVVEFKENGT 137 (379)
T ss_dssp -------SCEEEEEEETTEEEEEEEECCCSSCEE-------------EEEECC-GGGCSEEEEEETTSEEEEEECCTTSC
T ss_pred -------CEEEEEEcCCCceeEeeeecCCCcceE-------------EEEeCC-CCCCCEEEEecCCCcEEEEecCCCCc
Confidence 999999999987 6777777776653 799999 9 89999998 99999999987643
Q ss_pred cc--cccccccCeeeEEECC-------------CCCeEEEEeecCCCCCCCeEEEEEecCCcc--ceeeeeeeeecceeE
Q 005140 353 ID--KKSLKVENVMDFSWSP-------------TDPIISLFVPELGGGNQPARVSLVQIPSKE--ELRQKNLFSVSDCKM 415 (712)
Q Consensus 353 ~~--~~~~~~~~v~~~~~sp-------------~~~~la~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~ 415 (712)
.. ....+...|.+++|+| ++.+|++ ++.++.+++|........ .......+......+
T Consensus 138 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~ 212 (379)
T 3jrp_A 138 TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVT-----GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV 212 (379)
T ss_dssp CCEEEEECCTTCEEEEEECCCC----------CTTCEEEE-----EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEE
T ss_pred eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEE-----EeCCCeEEEEEecCCCcceeeEEEEecccCcEeEE
Confidence 32 2234666799999999 6889988 778888777776644322 223333345566778
Q ss_pred EECcC---CCEEEEEEcccccccccccccEEEEEEecCCcceeEEEe--cCCCCceEEEEEeeCCCEEEEEEcCCCCCeE
Q 005140 416 YWQSS---GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL--DNKNDKIIAFAWEPKGHRFAVIHGDSPRPDI 490 (712)
Q Consensus 416 ~~s~~---g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l--~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v 490 (712)
.|+|+ +.+|++++.++. +.+|++.....+.....+ ..|...|.+++|+|+|++|++++.|+ .|
T Consensus 213 ~~sp~~~~~~~l~s~~~dg~---------i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg---~i 280 (379)
T 3jrp_A 213 AWSPTVLLRSYLASVSQDRT---------CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN---KV 280 (379)
T ss_dssp EECCCCSSSEEEEEEETTSC---------EEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSS---SE
T ss_pred EECCCCCCCCeEEEEeCCCE---------EEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCC---cE
Confidence 99999 899999998877 899999875433322322 34788999999999999999999999 99
Q ss_pred EEEEeecc
Q 005140 491 SFYSMRTA 498 (712)
Q Consensus 491 ~i~d~~~~ 498 (712)
++|++...
T Consensus 281 ~iw~~~~~ 288 (379)
T 3jrp_A 281 TLWKENLE 288 (379)
T ss_dssp EEEEEEET
T ss_pred EEEeCCCC
Confidence 99999754
No 96
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.95 E-value=7e-26 Score=241.75 Aligned_cols=276 Identities=20% Similarity=0.315 Sum_probs=205.1
Q ss_pred cchhhccCCCCCceEEEEECCeeEEEecCCCCCCCcc--cccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcce
Q 005140 171 NLQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEP--VYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNR 247 (712)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~--~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~ 247 (712)
++.+|= + ...++++ .++++.+|+. ..++... .+.+|...|++|+|||+|++||+|+.|+ |+||++. +++.
T Consensus 109 ~~l~wS--~--~n~lAvg-ld~tV~lWd~-~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~-~~~~ 181 (420)
T 4gga_A 109 NLVDWS--S--GNVLAVA-LDNSVYLWSA-SSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ-QQKR 181 (420)
T ss_dssp BCEEEC--T--TSEEEEE-ETTEEEEEET-TTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEE
T ss_pred eeEEEC--C--CCEEEEE-eCCEEEEEEC-CCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcC-CCcE
Confidence 556663 2 2355555 4788999998 4555444 3457888899999999999999999999 8899999 7887
Q ss_pred eeeec-CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC-ceeeeccCCCcccccCCCCCcCCCCcCeE
Q 005140 248 LMRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG-KVMRDFKGSADEFAVGGTGGVAGVSWPVF 324 (712)
Q Consensus 248 ~~~~~-~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (712)
+..+. |. .+.+++| ++.+|++++.+ +.+++||.... ..+..+.+|...+. .+
T Consensus 182 ~~~~~~h~~~v~~~s~--~~~~l~sgs~d----------~~i~~~d~~~~~~~~~~~~~h~~~~~-------------~~ 236 (420)
T 4gga_A 182 LRNMTSHSARVGSLSW--NSYILSSGSRS----------GHIHHHDVRVAEHHVATLSGHSQEVC-------------GL 236 (420)
T ss_dssp EEEECCCSSCEEEEEE--ETTEEEEEETT----------SEEEEEETTSSSCEEEEEECCSSCEE-------------EE
T ss_pred EEEEeCCCCceEEEee--CCCEEEEEeCC----------CceeEeeecccceeeEEeccccccee-------------ee
Confidence 77764 33 3666655 67899999999 99999998764 45677888877653 68
Q ss_pred EecCCCCCEEEEec-CCeEEEEEcCCceec----ccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc
Q 005140 325 RWGGGKDKYFAKLG-KNMISVYETESFTLI----DKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 399 (712)
Q Consensus 325 ~~s~~dg~~la~~~-d~~i~iwd~~~~~~~----~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 399 (712)
.|+| +++++++++ |+.+++|+..++... .....+...|.+++|+|.+..+++... ++.|+.++ +|++.+.
T Consensus 237 ~~~~-~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~--gs~D~~I~--iwd~~t~ 311 (420)
T 4gga_A 237 RWAP-DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG--GTSDRHIR--IWNVCSG 311 (420)
T ss_dssp EECT-TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEE--CTTTCEEE--EEETTTT
T ss_pred eecC-CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEe--ecCCCEEE--EEeCCcc
Confidence 9999 999999999 999999999876532 223345567999999998765543211 22444444 4444322
Q ss_pred cceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEE
Q 005140 400 EELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFA 479 (712)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~ 479 (712)
..+ ..+ .+...+.++.|+|+++.++
T Consensus 312 ~~~------------------------------------------------------~~~-~~~~~v~~~~~~~~~~~lv 336 (420)
T 4gga_A 312 ACL------------------------------------------------------SAV-DAHSQVCSILWSPHYKELI 336 (420)
T ss_dssp EEE------------------------------------------------------EEE-ECSSCEEEEEEETTTTEEE
T ss_pred ccc------------------------------------------------------eee-ccccceeeeeecCCCCeEE
Confidence 110 011 1256788899999999999
Q ss_pred EEEc--CCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceee
Q 005140 480 VIHG--DSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETM 550 (712)
Q Consensus 480 ~~~~--d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~ 550 (712)
++++ |+ .|+|||+.++. ++..+.+| .|++++|||+|++|++++. |++|+|||+......
T Consensus 337 ~~sg~~d~---~I~iwd~~~~~------~v~~l~gH~~~V~~l~~spdg~~l~S~s~---D~tvriWdv~~~~~~ 399 (420)
T 4gga_A 337 SGHGFAQN---QLVIWKYPTMA------KVAELKGHTSRVLSLTMSPDGATVASAAA---DETLRLWRCFELDPA 399 (420)
T ss_dssp EEECTTTC---CEEEEETTTCC------EEEEECCCSSCEEEEEECTTSSCEEEEET---TTEEEEECCSCSSCC
T ss_pred EEEecCCC---EEEEEECCCCc------EEEEEcCCCCCEEEEEEcCCCCEEEEEec---CCeEEEEECCCCCcc
Confidence 8874 56 89999997654 67777766 7999999999999999998 999999999765443
No 97
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.95 E-value=7.3e-27 Score=250.58 Aligned_cols=290 Identities=10% Similarity=0.049 Sum_probs=199.4
Q ss_pred chhhccCCCCCceEEEEECCeeEEEecCCCCC-CCcccccCCCcccceEEEcC-CCcEEEEEecCc-eEEeecccCccee
Q 005140 172 LQKWLTDEKARDQFVIRSGTDTEVLWNDARHL-KPEPVYKRSYWTESFVQWSP-LGTYLATVHRQG-AAVWGGANTFNRL 248 (712)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~~~~v~~v~~Sp-dg~~lat~~~~~-i~iw~~~~~~~~~ 248 (712)
+.+..++|.....+++++.++.+.+|+..... .....+.+|...|++|+|+| +|.+|++++.|+ |+|||+. +....
T Consensus 122 V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~-~~~~~ 200 (435)
T 4e54_B 122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK-GNILR 200 (435)
T ss_dssp EEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETT-SCEEE
T ss_pred EEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc-CCcee
Confidence 44556677666678888999999999984332 23445678999999999998 789999999999 8899998 44332
Q ss_pred eee-cCC---CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeE
Q 005140 249 MRY-AHP---QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVF 324 (712)
Q Consensus 249 ~~~-~~~---~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (712)
... ++. .+.+++|+|++++|++|+.+ +.|++||+ .++.+..+.+|...+. ++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~d----------g~i~~wd~-~~~~~~~~~~h~~~v~-------------~v 256 (435)
T 4e54_B 201 VFASSDTINIWFCSLDVSASSRMVVTGDNV----------GNVILLNM-DGKELWNLRMHKKKVT-------------HV 256 (435)
T ss_dssp EEECCSSCSCCCCCEEEETTTTEEEEECSS----------SBEEEEES-SSCBCCCSBCCSSCEE-------------EE
T ss_pred EEeccCCCCccEEEEEECCCCCEEEEEeCC----------CcEeeecc-CcceeEEEecccceEE-------------ee
Confidence 222 222 27899999999999999999 99999997 5677888888877764 79
Q ss_pred EecCCCCC-EEEEec-CCeEEEEEcCCceecccc---cccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc
Q 005140 325 RWGGGKDK-YFAKLG-KNMISVYETESFTLIDKK---SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 399 (712)
Q Consensus 325 ~~s~~dg~-~la~~~-d~~i~iwd~~~~~~~~~~---~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 399 (712)
+|+| ++. +|++++ |+.|+|||+.+....... ..|...|.+++|+|+|.+|++ ++.|+.++|| ++.+.
T Consensus 257 ~~~p-~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s-----~~~D~~i~iw--d~~~~ 328 (435)
T 4e54_B 257 ALNP-CCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLT-----TDQKSEIRVY--SASQW 328 (435)
T ss_dssp EECT-TCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEE-----EESSSCEEEE--ESSSS
T ss_pred eecC-CCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEE-----EcCCCEEEEE--ECCCC
Confidence 9999 876 677777 999999999876543322 346678999999999999999 7777776665 44433
Q ss_pred cceeeeeeee------ecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee
Q 005140 400 EELRQKNLFS------VSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP 473 (712)
Q Consensus 400 ~~~~~~~~~~------~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp 473 (712)
........+. .......|+|++.. ..+++++
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~~~~ 365 (435)
T 4e54_B 329 DCPLGLIPHPHRHFQHLTPIKAAWHPRYNL-------------------------------------------IVVGRYP 365 (435)
T ss_dssp SSEEEECCCCCCCCSSSCCCBCEECSSSSC-------------------------------------------EEEECCC
T ss_pred ccceEEecccccccccceeEEEEEcCCCCE-------------------------------------------EEEEEcC
Confidence 3221111000 01111122222222 2223334
Q ss_pred CCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-C--CceeEE-EEccCCCeEEEEeccCCCceEEEEECCccee
Q 005140 474 KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-G--KQANAL-FWSPSGRFIVLAGLKGFNGQLEFYNVDELET 549 (712)
Q Consensus 474 ~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~--~~v~~l-~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~ 549 (712)
++..+++++.++ ..|++||..++. .+..+. + ..|.++ +|||+|++|++++ |+.|+||++++++.
T Consensus 366 d~~~~~~~~~~~--~~i~iwd~~~g~------~~~~l~~~~~~~v~s~~~fspdg~~lasg~----d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 366 DPNFKSCTPYEL--RTIDVFDGNSGK------MMCQLYDPESSGISSLNEFNPMGDTLASAM----GYHILIWSQQEART 433 (435)
T ss_dssp CTTSCCSSTTCC--CCEEEECSSSCC------EEEEECCSSCCCCCCEEEECTTSSCEEEEC----SSEEEECCCC----
T ss_pred CCCeEEEEecCC--CEEEEEECCCCc------EEEEEeCCCCCcEEEEEEECCCCCEEEEEc----CCcEEEEECCcCee
Confidence 444333333332 279999997765 444443 2 256666 6999999999875 78999999997764
No 98
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.3e-26 Score=240.41 Aligned_cols=245 Identities=16% Similarity=0.294 Sum_probs=193.3
Q ss_pred eecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc--CCceeeeccCCCcccccCCCCCcCCCCcCeEEec
Q 005140 250 RYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR--TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWG 327 (712)
Q Consensus 250 ~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 327 (712)
..|...|.+++|+|+|++||+++.+ +.|+|||+. +++.+..+.+|...+. +++|+
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~d----------g~i~iw~~~~~~~~~~~~~~~h~~~v~-------------~~~~~ 64 (379)
T 3jrp_A 8 NAHNELIHDAVLDYYGKRLATCSSD----------KTIKIFEVEGETHKLIDTLTGHEGPVW-------------RVDWA 64 (379)
T ss_dssp EECCCCEEEEEECSSSSEEEEEETT----------SCEEEEEEETTEEEEEEEECCCSSCEE-------------EEEEC
T ss_pred cCCcccEEEEEEcCCCCEEEEEECC----------CcEEEEecCCCcceeeeEecCCCCcEE-------------EEEeC
Confidence 3344569999999999999999999 999999998 6677888888887764 79999
Q ss_pred CCC--CCEEEEec-CCeEEEEEcCCce--ecccccccccCeeeEEECCC--CCeEEEEeecCCCCCCCeEEEEEecCCcc
Q 005140 328 GGK--DKYFAKLG-KNMISVYETESFT--LIDKKSLKVENVMDFSWSPT--DPIISLFVPELGGGNQPARVSLVQIPSKE 400 (712)
Q Consensus 328 ~~d--g~~la~~~-d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~--~~~la~~~~~~~~~~~~~~i~~~~~~~~~ 400 (712)
+ + +++|++++ |+.|++|++.++. .+.....|...|.+++|+|+ +.+|++ ++.++.+++|.+. ...
T Consensus 65 ~-~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-----~~~d~~i~v~d~~--~~~ 136 (379)
T 3jrp_A 65 H-PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLV-----ASSDGKVSVVEFK--ENG 136 (379)
T ss_dssp C-GGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEE-----EETTSEEEEEECC--TTS
T ss_pred C-CCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEE-----ecCCCcEEEEecC--CCC
Confidence 8 7 89999999 9999999999876 44444456677999999998 888887 5556555544322 110
Q ss_pred ceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee-------
Q 005140 401 ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP------- 473 (712)
Q Consensus 401 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp------- 473 (712)
. .....+.+|...|.+++|+|
T Consensus 137 ---------------------------------------------------~-~~~~~~~~~~~~v~~~~~~~~~~~~~~ 164 (379)
T 3jrp_A 137 ---------------------------------------------------T-TSPIIIDAHAIGVNSASWAPATIEEDG 164 (379)
T ss_dssp ---------------------------------------------------C-CCEEEEECCTTCEEEEEECCCC-----
T ss_pred ---------------------------------------------------c-eeeEEecCCCCceEEEEEcCccccccc
Confidence 0 01122346788999999999
Q ss_pred ------CCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccC---CCeEEEEeccCCCceEEEE
Q 005140 474 ------KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPS---GRFIVLAGLKGFNGQLEFY 542 (712)
Q Consensus 474 ------~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spd---g~~l~~~~~~~~dg~v~iw 542 (712)
++.+|++++.|+ .|++||++++... ...+..+..| .+.+++|+|+ +++|++++. ||.|++|
T Consensus 165 ~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~--~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~---dg~i~iw 236 (379)
T 3jrp_A 165 EHNGTKESRKFVTGGADN---LVKIWKYNSDAQT--YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ---DRTCIIW 236 (379)
T ss_dssp -----CTTCEEEEEETTS---CEEEEEEETTTTE--EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET---TSCEEEE
T ss_pred cccCCCCCCEEEEEeCCC---eEEEEEecCCCcc--eeeEEEEecccCcEeEEEECCCCCCCCeEEEEeC---CCEEEEE
Confidence 699999999999 9999999865422 2344455544 7999999999 899999998 9999999
Q ss_pred ECCcce-----eeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 543 NVDELE-----TMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 543 d~~~~~-----~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
|+.++. .+.. .+...+++++|+|+|++|++++. |+.++||++.
T Consensus 237 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-----dg~i~iw~~~ 286 (379)
T 3jrp_A 237 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG-----DNKVTLWKEN 286 (379)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEES-----SSSEEEEEEE
T ss_pred eCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecC-----CCcEEEEeCC
Confidence 998753 2222 36688999999999999999999 9999999987
No 99
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.2e-25 Score=242.20 Aligned_cols=279 Identities=11% Similarity=0.037 Sum_probs=204.7
Q ss_pred cccceEEEcCCCcEEEEEecCceEEeecccCcc---eeeeecC-------------------------------------
Q 005140 214 WTESFVQWSPLGTYLATVHRQGAAVWGGANTFN---RLMRYAH------------------------------------- 253 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~---~~~~~~~------------------------------------- 253 (712)
.++.+++|||+|++|+++..+.|.+|++. +++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~~~~~i~v~d~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAIIKNCILSFKYQ-SPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEEETTEEEEEEEE-TTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEEeCCeEEEEECC-CCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 46789999999998888877779999988 666 4433321
Q ss_pred ------------------C-CeeEEEecCCCCEE-EEEcCCCCCCCcCCCccEEEEEEcc--CCceeeeccC--CCcccc
Q 005140 254 ------------------P-QVKLIDFSPGEKYL-VTYSSHEPSNPRDANRVVINIFDVR--TGKVMRDFKG--SADEFA 309 (712)
Q Consensus 254 ------------------~-~v~~i~~Spdg~~l-~t~s~d~~~~~~~~~~~~I~iwd~~--~g~~~~~~~~--~~~~~~ 309 (712)
. .|.+++|||+|++| ++++.+ +.|+|||+. +++.+..+.. +...+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~d----------g~v~iwd~~~~~~~~~~~~~~~~~~~~v~ 153 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSD----------KSLLVFDVDKTSKNVLKLRKRFCFSKRPN 153 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGG----------TEEEEEEECSSSSSCEEEEEEEECSSCEE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCC----------CeEEEEECcCCCCceeeeeecccCCCCce
Confidence 1 49999999999996 899888 999999998 8888888763 333332
Q ss_pred cCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecc----cccccccCeeeEEECCC---CCeEEEEeec
Q 005140 310 VGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLID----KKSLKVENVMDFSWSPT---DPIISLFVPE 381 (712)
Q Consensus 310 ~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~----~~~~~~~~v~~~~~sp~---~~~la~~~~~ 381 (712)
+++|+| ++++|++++ ++.|.+|++.++.... ....|...|.+++|+|+ +++|++
T Consensus 154 -------------~~~~sp-~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s---- 215 (450)
T 2vdu_B 154 -------------AISIAE-DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIIT---- 215 (450)
T ss_dssp -------------EEEECT-TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEE----
T ss_pred -------------EEEEcC-CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEE----
Confidence 799999 999999998 9999999998776543 44456677888999988 878877
Q ss_pred CCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecC
Q 005140 382 LGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDN 461 (712)
Q Consensus 382 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~ 461 (712)
++.++.+++|.+. +.. . . ...+.+
T Consensus 216 -~~~d~~i~vwd~~--~~~---------------------------------------------------~-~-~~~~~~ 239 (450)
T 2vdu_B 216 -SDRDEHIKISHYP--QCF---------------------------------------------------I-V-DKWLFG 239 (450)
T ss_dssp -EETTSCEEEEEES--CTT---------------------------------------------------C-E-EEECCC
T ss_pred -EcCCCcEEEEECC--CCc---------------------------------------------------e-e-eeeecC
Confidence 5566655554332 111 0 0 011337
Q ss_pred CCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC---------------------------CCc
Q 005140 462 KNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK---------------------------GKQ 514 (712)
Q Consensus 462 h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~---------------------------~~~ 514 (712)
|...|.+++|+ ++++|++++.|+ .|++||+.++. .+..+. ...
T Consensus 240 h~~~v~~~~~s-d~~~l~s~~~d~---~v~vwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (450)
T 2vdu_B 240 HKHFVSSICCG-KDYLLLSAGGDD---KIFAWDWKTGK------NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFA 309 (450)
T ss_dssp CSSCEEEEEEC-STTEEEEEESSS---EEEEEETTTCC------EEEEEECHHHHGGGCCTTSBC----------CBCCC
T ss_pred CCCceEEEEEC-CCCEEEEEeCCC---eEEEEECCCCc------EeeeecchhhhhhhhhhcccccccccccccccceEE
Confidence 88999999999 999999999999 99999997654 222222 125
Q ss_pred eeEEEEccCCCeEEEEe-ccCCCceEEEEEC--Ccc---eeeee-ccccceeeEEECCCCCEEEEEEccc-eeccccEEE
Q 005140 515 ANALFWSPSGRFIVLAG-LKGFNGQLEFYNV--DEL---ETMAT-AEHFMATDVEWDPTGRYVATAVTSV-HEMENGFNI 586 (712)
Q Consensus 515 v~~l~~spdg~~l~~~~-~~~~dg~v~iwd~--~~~---~~~~~-~~~~~v~~~~~spdg~~l~t~s~~~-~~~d~~v~i 586 (712)
+..++|+|+|++|++++ . ++.|++|++ ..+ +.+.. ..+..+.+++|+|++.++++++... -..++.+.+
T Consensus 310 v~~i~~~~~~~~l~~~~~~---d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v 386 (450)
T 2vdu_B 310 VSKIIKSKNLPFVAFFVEA---TKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKF 386 (450)
T ss_dssp EEEEEECSSSSEEEEEETT---CSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEE
T ss_pred EEEEEEeCCCCEEEEEECC---CCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEEEEecccCCCCCCcceEE
Confidence 78999999999999998 5 899999999 444 44433 2237899999999643333333210 001456889
Q ss_pred EEec
Q 005140 587 WSFN 590 (712)
Q Consensus 587 w~~~ 590 (712)
|.+.
T Consensus 387 ~~~~ 390 (450)
T 2vdu_B 387 IEYN 390 (450)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9875
No 100
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.95 E-value=1e-25 Score=242.63 Aligned_cols=293 Identities=11% Similarity=0.162 Sum_probs=232.6
Q ss_pred EecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-
Q 005140 260 DFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG- 338 (712)
Q Consensus 260 ~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~- 338 (712)
+++++|++|++++.| +.|++||+.+++.+..+.+|...+. ++.|++ .++++++
T Consensus 124 ~~~~~g~~l~sg~~d----------g~i~vwd~~~~~~~~~~~~h~~~v~-------------~~~~~~---~~l~s~~~ 177 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDD----------NTLKVWSAVTGKCLRTLVGHTGGVW-------------SSQMRD---NIIISGST 177 (445)
T ss_dssp EEEEETTEEEEEETT----------SCEEEEETTTCCEEEECCCCSSCEE-------------EEEEET---TEEEEEET
T ss_pred EEEEcCCEEEEEECC----------CcEEEEECCCCcEEEEEcCCCCCEE-------------EEEecC---CEEEEEeC
Confidence 355679999999999 9999999999999999999987763 577765 6888888
Q ss_pred CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEEC
Q 005140 339 KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQ 418 (712)
Q Consensus 339 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s 418 (712)
|+.|++|++.+++.+.....|...|.+++|+ +..|++ ++.++. |.+|++.+.+.+.....+......+.|
T Consensus 178 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s-----~s~dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~- 247 (445)
T 2ovr_B 178 DRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVS-----GSRDAT--LRVWDIETGQCLHVLMGHVAAVRCVQY- 247 (445)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEE-----EETTSE--EEEEESSSCCEEEEEECCSSCEEEEEE-
T ss_pred CCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEE-----EeCCCE--EEEEECCCCcEEEEEcCCcccEEEEEE-
Confidence 9999999999998887777788889999996 466777 556655 555666666655555545555556666
Q ss_pred cCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecc
Q 005140 419 SSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTA 498 (712)
Q Consensus 419 ~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~ 498 (712)
+|.++++++.++. +.+|++.... ....+.+|...|.+++| ++.++++++.|+ .|++||+.++
T Consensus 248 -~~~~l~~~~~dg~---------i~iwd~~~~~---~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~---~i~i~d~~~~ 309 (445)
T 2ovr_B 248 -DGRRVVSGAYDFM---------VKVWDPETET---CLHTLQGHTNRVYSLQF--DGIHVVSGSLDT---SIRVWDVETG 309 (445)
T ss_dssp -CSSCEEEEETTSC---------EEEEEGGGTE---EEEEECCCSSCEEEEEE--CSSEEEEEETTS---CEEEEETTTC
T ss_pred -CCCEEEEEcCCCE---------EEEEECCCCc---EeEEecCCCCceEEEEE--CCCEEEEEeCCC---eEEEEECCCC
Confidence 7899999998877 7888876432 23456688999999999 899999999999 9999999765
Q ss_pred cccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeec-----cccceeeEEECCCCCEEEEE
Q 005140 499 QHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATA-----EHFMATDVEWDPTGRYVATA 573 (712)
Q Consensus 499 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~-----~~~~v~~~~~spdg~~l~t~ 573 (712)
. .+..+.++.....+++++++++++++. ||.|++||+.+++.+... |...|++++|+ +++|+++
T Consensus 310 ~------~~~~~~~~~~~v~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~ 378 (445)
T 2ovr_B 310 N------CIHTLTGHQSLTSGMELKDNILVSGNA---DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITS 378 (445)
T ss_dssp C------EEEEECCCCSCEEEEEEETTEEEEEET---TSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEE
T ss_pred C------EEEEEcCCcccEEEEEEeCCEEEEEeC---CCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEE
Confidence 4 566666554333445557889999998 999999999988877652 56789999996 6899999
Q ss_pred EccceeccccEEEEEec-Cceeeee-------cccceeeeEEecCCCCCCChhhHHH
Q 005140 574 VTSVHEMENGFNIWSFN-GKLLYRT-------LKDHFFQFLWRPRPPSFLTPEKEEE 622 (712)
Q Consensus 574 s~~~~~~d~~v~iw~~~-g~~~~~~-------~~~~i~~~~w~p~~~~l~s~~~d~~ 622 (712)
+. |+.|++|++. +..+... +.+.+++++|+|++..+++++.|+.
T Consensus 379 ~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~ 430 (445)
T 2ovr_B 379 SD-----DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 430 (445)
T ss_dssp ET-----TSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSS
T ss_pred eC-----CCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCC
Confidence 99 9999999987 5554433 3468999999999999999888764
No 101
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.95 E-value=1.3e-25 Score=267.20 Aligned_cols=389 Identities=11% Similarity=0.102 Sum_probs=252.8
Q ss_pred eEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecC----c---eEEeecccCcceeeeecCCC-
Q 005140 184 QFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQ----G---AAVWGGANTFNRLMRYAHPQ- 255 (712)
Q Consensus 184 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~----~---i~iw~~~~~~~~~~~~~~~~- 255 (712)
+++..+. +.+.+|+. .+.....+..|...+.+++|||||++||+++.+ + |.+|+.. ++.......|..
T Consensus 26 ~iaf~~~-~~l~~~~~--~gg~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~-~g~~~~lt~~~~~ 101 (1045)
T 1k32_A 26 RIIFVCC-DDLWEHDL--KSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGE-NGEIKRITYFSGK 101 (1045)
T ss_dssp EEEEEET-TEEEEEET--TTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETT-TTEEEECCCCCEE
T ss_pred EEEEEEC-CcEEEEEC--CCCcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECC-CCCeEEcccCCCc
Confidence 4444443 56778887 334456788899999999999999999998653 2 7799988 554322223443
Q ss_pred e-------eEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccc-------cC-------C--
Q 005140 256 V-------KLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFA-------VG-------G-- 312 (712)
Q Consensus 256 v-------~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~-------~~-------~-- 312 (712)
+ ..++|||||+.+++++.+.. ......|++|++.++........+..... .+ .
T Consensus 102 ~~~~~~~~~~~~~SpDg~ll~~~~~~~~----~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~ 177 (1045)
T 1k32_A 102 STGRRMFTDVAGFDPDGNLIISTDAMQP----FSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWK 177 (1045)
T ss_dssp EETTEECSEEEEECTTCCEEEEECTTSS----STTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTST
T ss_pred ccccccccccccCCCCCEEEEEECCcCC----CcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccc
Confidence 6 89999999996666664311 11124688899877664332221110000 00 0
Q ss_pred --CC-------------------CcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCC-ceecccccccccCeeeEEEC
Q 005140 313 --TG-------------------GVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETES-FTLIDKKSLKVENVMDFSWS 369 (712)
Q Consensus 313 --~~-------------------~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s 369 (712)
.+ ...+ ...++.|++ + .+++++. ++.+.||.+.. +...... .....+..++||
T Consensus 178 ~~~g~~~~~lw~~~~~~~~~~l~~~~~-~v~~~~~s~-d-~l~~~~~~dg~~~l~~~~~~g~~~~~l-~~~~~~~~~~~S 253 (1045)
T 1k32_A 178 GYRGGTRGKIWIEVNSGAFKKIVDMST-HVSSPVIVG-H-RIYFITDIDGFGQIYSTDLDGKDLRKH-TSFTDYYPRHLN 253 (1045)
T ss_dssp TCCSTTCCEEEEEEETTEEEEEECCSS-CCEEEEEET-T-EEEEEECTTSSCEEEEEETTSCSCEEC-CCCCSSCEEEEE
T ss_pred cccCCCcCCEEEECCCCCeEECcCCCC-cccceEEeC-C-EEEEEEeccCceEEEEEeCCCCcceEe-cCCCCcceeeEc
Confidence 00 0000 011467888 7 5555555 78889998653 2222222 122346678999
Q ss_pred CCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeee-----------eeecceeEEEC-cCCCEEEEEEccccccccc
Q 005140 370 PTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL-----------FSVSDCKMYWQ-SSGDYLAVKVDRYTKTKKS 437 (712)
Q Consensus 370 p~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----------~~~~~~~~~~s-~~g~~l~~~~~~~~~~~~~ 437 (712)
|+|+.|++ + ....|++|+.... .+..... +......+.|+ |+|++|++....
T Consensus 254 pDG~~la~-----~---~~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~------- 317 (1045)
T 1k32_A 254 TDGRRILF-----S---KGGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRG------- 317 (1045)
T ss_dssp ESSSCEEE-----E---ETTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETT-------
T ss_pred CCCCEEEE-----E---eCCEEEEecCCce-EeeeeccCcccccccccccccccceeeecCCCCCEEEEEEcC-------
Confidence 99999998 3 1346888877332 2221111 11235678999 999999988732
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCC-ceEEEEEeeCCCEEEEEEcCCCCCeEE-EEEeecccccCceeEEEEeCCCce
Q 005140 438 TYTGFELFRIKERDIPIEVLELDNKND-KIIAFAWEPKGHRFAVIHGDSPRPDIS-FYSMRTAQHAGRVSKLTTLKGKQA 515 (712)
Q Consensus 438 ~~~~~~l~~l~~~~~~~~~~~l~~h~~-~v~~~~~sp~g~~l~~~~~d~~~~~v~-i~d~~~~~~~~~~~~~~~~~~~~v 515 (712)
.+|.+...... ...+..|.. .+.+++|+ +|+.|++++.+. .+. +|++.++.. ..+. .....+
T Consensus 318 -----~i~~~~~~~~~--~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~---~l~~~~d~~~~~~----~~l~-~~~~~~ 381 (1045)
T 1k32_A 318 -----QAFIQDVSGTY--VLKVPEPLRIRYVRRGGD-TKVAFIHGTREG---DFLGIYDYRTGKA----EKFE-ENLGNV 381 (1045)
T ss_dssp -----EEEEECTTSSB--EEECSCCSCEEEEEECSS-SEEEEEEEETTE---EEEEEEETTTCCE----EECC-CCCCSE
T ss_pred -----EEEEEcCCCCc--eEEccCCCcceEEeeeEc-CCCeEEEEECCC---ceEEEEECCCCCc----eEec-CCccce
Confidence 23333332222 234556777 89999999 999999998855 788 888865431 1222 123368
Q ss_pred eEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccc-----eeccccEEEEE
Q 005140 516 NALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSV-----HEMENGFNIWS 588 (712)
Q Consensus 516 ~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~-----~~~d~~v~iw~ 588 (712)
..++|||||++|++++. ++.|++||+.+++.... .+...+.+++|||||++|++++... ...++.+++|+
T Consensus 382 ~~~~~SpDG~~la~~~~---~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d 458 (1045)
T 1k32_A 382 FAMGVDRNGKFAVVAND---RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYD 458 (1045)
T ss_dssp EEEEECTTSSEEEEEET---TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred eeeEECCCCCEEEEECC---CCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEE
Confidence 89999999999999987 89999999998876554 5667789999999999999887610 00125899999
Q ss_pred ecCceeeee--cccceeeeEEecCCCCCCChhh
Q 005140 589 FNGKLLYRT--LKDHFFQFLWRPRPPSFLTPEK 619 (712)
Q Consensus 589 ~~g~~~~~~--~~~~i~~~~w~p~~~~l~s~~~ 619 (712)
+.+..+... +...+..++|+|+|+.|+..+.
T Consensus 459 ~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~ 491 (1045)
T 1k32_A 459 MEGRKIFAATTENSHDYAPAFDADSKNLYYLSY 491 (1045)
T ss_dssp TTTTEEEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred CCCCcEEEeeCCCcccCCceEcCCCCEEEEEec
Confidence 986544433 4466888999999998876654
No 102
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.95 E-value=5e-26 Score=241.52 Aligned_cols=289 Identities=15% Similarity=0.279 Sum_probs=218.8
Q ss_pred cCCCcccceEEEcCCCcEEE-EEecCc-eEEeecccCcce---eeee-cCC-CeeEEEecC-CCCEEEEEcCCCCCCCcC
Q 005140 210 KRSYWTESFVQWSPLGTYLA-TVHRQG-AAVWGGANTFNR---LMRY-AHP-QVKLIDFSP-GEKYLVTYSSHEPSNPRD 281 (712)
Q Consensus 210 ~~~~~~v~~v~~Spdg~~la-t~~~~~-i~iw~~~~~~~~---~~~~-~~~-~v~~i~~Sp-dg~~l~t~s~d~~~~~~~ 281 (712)
....+...+++++|+...++ +++.+| |.||+....... +..+ .|. .|.+++|+| ++++|++++.|
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~d------- 103 (402)
T 2aq5_A 31 SQTTWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSED------- 103 (402)
T ss_dssp CCCCCSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETT-------
T ss_pred ecCccCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCC-------
Confidence 34456677899999987555 466777 889998633221 2222 244 599999999 99999999999
Q ss_pred CCccEEEEEEccCC-------ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC-CEEEEec-CCeEEEEEcCCcee
Q 005140 282 ANRVVINIFDVRTG-------KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD-KYFAKLG-KNMISVYETESFTL 352 (712)
Q Consensus 282 ~~~~~I~iwd~~~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg-~~la~~~-d~~i~iwd~~~~~~ 352 (712)
+.|+|||+.++ +.+..+.+|...+. +++|+| ++ .+|++++ |+.|++||+.+++.
T Consensus 104 ---g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~-------------~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~ 166 (402)
T 2aq5_A 104 ---CTVMVWEIPDGGLVLPLREPVITLEGHTKRVG-------------IVAWHP-TAQNVLLSAGCDNVILVWDVGTGAA 166 (402)
T ss_dssp ---SEEEEEECCTTCCSSCBCSCSEEEECCSSCEE-------------EEEECS-SBTTEEEEEETTSCEEEEETTTTEE
T ss_pred ---CeEEEEEccCCCCccccCCceEEecCCCCeEE-------------EEEECc-CCCCEEEEEcCCCEEEEEECCCCCc
Confidence 99999999888 56777888877663 799999 98 6888888 99999999999887
Q ss_pred cccc--cccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeee-eeeeec-ceeEEECcCCCEEEEE-
Q 005140 353 IDKK--SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK-NLFSVS-DCKMYWQSSGDYLAVK- 427 (712)
Q Consensus 353 ~~~~--~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~-~~~~~~s~~g~~l~~~- 427 (712)
+... ..|...|.+++|+|++++|++ ++.++ .|.+|++.+.+.+... ..+... ...+.|+|+|.+|+++
T Consensus 167 ~~~~~~~~~~~~v~~~~~~~~~~~l~~-----~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 239 (402)
T 2aq5_A 167 VLTLGPDVHPDTIYSVDWSRDGALICT-----SCRDK--RVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGF 239 (402)
T ss_dssp EEEECTTTCCSCEEEEEECTTSSCEEE-----EETTS--EEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEE
T ss_pred cEEEecCCCCCceEEEEECCCCCEEEE-----EecCC--cEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEec
Confidence 7665 567788999999999999998 55555 4556677666655544 333333 5678899999999988
Q ss_pred --EcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEE-cCCCCCeEEEEEeecccccCce
Q 005140 428 --VDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIH-GDSPRPDISFYSMRTAQHAGRV 504 (712)
Q Consensus 428 --~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~-~d~~~~~v~i~d~~~~~~~~~~ 504 (712)
..++. +.+|++.....+.....+ .|...+.+++|+|++++|++++ .|+ .|++|++.++.. ..
T Consensus 240 ~~~~d~~---------i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~g~~dg---~i~i~d~~~~~~--~~ 304 (402)
T 2aq5_A 240 SRMSERQ---------VALWDTKHLEEPLSLQEL-DTSSGVLLPFFDPDTNIVYLCGKGDS---SIRYFEITSEAP--FL 304 (402)
T ss_dssp CTTCCEE---------EEEEETTBCSSCSEEEEC-CCCSSCEEEEEETTTTEEEEEETTCS---CEEEEEECSSTT--CE
T ss_pred cCCCCce---------EEEEcCccccCCceEEec-cCCCceeEEEEcCCCCEEEEEEcCCC---eEEEEEecCCCc--ce
Confidence 34444 889998776555444444 5678899999999999998766 578 999999976542 12
Q ss_pred eEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCccee
Q 005140 505 SKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET 549 (712)
Q Consensus 505 ~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~ 549 (712)
..+..+. ..++.+++|+|+|.++++ . ++.+++|++.++.+
T Consensus 305 ~~l~~~~~~~~v~~~~~sp~~~~~~s--~---~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 305 HYLSMFSSKESQRGMGYMPKRGLEVN--K---CEIARFYKLHERKC 345 (402)
T ss_dssp EEEEEECCSSCCSEEEECCGGGSCGG--G---TEEEEEEEEETTEE
T ss_pred EeecccccCCcccceEEeccccccee--c---ceeEEEEEcCCCcE
Confidence 2444443 457999999999998764 3 67999999986543
No 103
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=5.6e-25 Score=235.82 Aligned_cols=328 Identities=10% Similarity=0.128 Sum_probs=230.3
Q ss_pred ccceEE---EcCCCcEEEEEec--------------Cc-eEEeeccc---CcceeeeecCC-CeeEEEecCCCCEEEEEc
Q 005140 215 TESFVQ---WSPLGTYLATVHR--------------QG-AAVWGGAN---TFNRLMRYAHP-QVKLIDFSPGEKYLVTYS 272 (712)
Q Consensus 215 ~v~~v~---~Spdg~~lat~~~--------------~~-i~iw~~~~---~~~~~~~~~~~-~v~~i~~Spdg~~l~t~s 272 (712)
.+..++ |+|++..++..+. ++ +.||.++. ....+..+... .+.+++|+|++.++++++
T Consensus 62 g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 141 (433)
T 3bws_A 62 ALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPLL 141 (433)
T ss_dssp EEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEEBT
T ss_pred ccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEEeC
Confidence 445566 7777766654332 22 24454431 22455555433 488999999777778877
Q ss_pred CCCCCCCcCCCccEEEEEEccCCceeee-----ccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEE
Q 005140 273 SHEPSNPRDANRVVINIFDVRTGKVMRD-----FKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYE 346 (712)
Q Consensus 273 ~d~~~~~~~~~~~~I~iwd~~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd 346 (712)
.+ +.|++||+.+++.++. +.+|...+. +++|++ ++.++++++ ++.|++|+
T Consensus 142 ~~----------~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~-------------~~~~~~-~~~~~~s~~~d~~v~~~d 197 (433)
T 3bws_A 142 ED----------EGMDVLDINSGQTVRLSPPEKYKKKLGFVE-------------TISIPE-HNELWVSQMQANAVHVFD 197 (433)
T ss_dssp TS----------SSEEEEETTTCCEEEECCCHHHHTTCCEEE-------------EEEEGG-GTEEEEEEGGGTEEEEEE
T ss_pred CC----------CeEEEEECCCCeEeeecCcccccccCCcee-------------EEEEcC-CCEEEEEECCCCEEEEEE
Confidence 77 7899999999998873 345544442 689999 999999998 99999999
Q ss_pred cCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEE
Q 005140 347 TESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAV 426 (712)
Q Consensus 347 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~ 426 (712)
+.+++.+.....+...+.+++|+|+++.+++. ++.+ ..|.+|++.+.+.+..... ......+.|+|+|+++++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~--~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~ 270 (433)
T 3bws_A 198 LKTLAYKATVDLTGKWSKILLYDPIRDLVYCS----NWIS--EDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDGKELYI 270 (433)
T ss_dssp TTTCCEEEEEECSSSSEEEEEEETTTTEEEEE----ETTT--TEEEEEETTTTEEEEECCC-CSEEEEEEECTTSSEEEE
T ss_pred CCCceEEEEEcCCCCCeeEEEEcCCCCEEEEE----ecCC--CcEEEEECCCCcEEEEecC-CCCceEEEEcCCCCEEEE
Confidence 99888776665666779999999999988652 2233 3677788776655444332 223566789999999988
Q ss_pred EEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEE-EcCCCCCeEEEEEeecccccCcee
Q 005140 427 KVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVI-HGDSPRPDISFYSMRTAQHAGRVS 505 (712)
Q Consensus 427 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~-~~d~~~~~v~i~d~~~~~~~~~~~ 505 (712)
+....... ....+.+.+|++... .. .....|...+.+++|+|++++++++ +.++ .|++|++.++.
T Consensus 271 ~~~~~~~~-~~~dg~i~~~d~~~~-~~---~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~---~v~v~d~~~~~------ 336 (433)
T 3bws_A 271 AQFSASNQ-ESGGGRLGIYSMDKE-KL---IDTIGPPGNKRHIVSGNTENKIYVSDMCCS---KIEVYDLKEKK------ 336 (433)
T ss_dssp EEEESCTT-CSCCEEEEEEETTTT-EE---EEEEEEEECEEEEEECSSTTEEEEEETTTT---EEEEEETTTTE------
T ss_pred EECCCCcc-ccCCCeEEEEECCCC-cE---EeeccCCCCcceEEECCCCCEEEEEecCCC---EEEEEECCCCc------
Confidence 77432100 001123677776533 11 2222445688899999999877665 4566 99999997543
Q ss_pred EEEEeC-CCceeEEEEccCCCeEEEEeccCC------------CceEEEEECCcceeeeec-cccceeeEEECCCCCEEE
Q 005140 506 KLTTLK-GKQANALFWSPSGRFIVLAGLKGF------------NGQLEFYNVDELETMATA-EHFMATDVEWDPTGRYVA 571 (712)
Q Consensus 506 ~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~------------dg~v~iwd~~~~~~~~~~-~~~~v~~~~~spdg~~l~ 571 (712)
.+..+. ...+.+++|+|+|++|++++.+.. ||.|++||+.+++.+... ....+.+++|+|+|++|+
T Consensus 337 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 416 (433)
T 3bws_A 337 VQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLV 416 (433)
T ss_dssp EEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEE
T ss_pred EEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEE
Confidence 333333 446899999999999998875321 479999999988877653 346789999999999999
Q ss_pred EEEccceeccccEEEEEecC
Q 005140 572 TAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 572 t~s~~~~~~d~~v~iw~~~g 591 (712)
+++.. |+.+++|++++
T Consensus 417 ~~~~~----d~~i~v~~~~~ 432 (433)
T 3bws_A 417 ISDFL----DHQIRVYRRDG 432 (433)
T ss_dssp EEETT----TTEEEEEEETT
T ss_pred EEECC----CCeEEEEEecC
Confidence 88743 89999999874
No 104
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.95 E-value=1.7e-25 Score=239.45 Aligned_cols=284 Identities=13% Similarity=0.280 Sum_probs=202.3
Q ss_pred CcccceEEEcCCC----------cEEEEEec-----CceEEeecc---------------------------cCcceeee
Q 005140 213 YWTESFVQWSPLG----------TYLATVHR-----QGAAVWGGA---------------------------NTFNRLMR 250 (712)
Q Consensus 213 ~~~v~~v~~Spdg----------~~lat~~~-----~~i~iw~~~---------------------------~~~~~~~~ 250 (712)
.|++.++.|.|+. .+|+.|.. ++|.|+++. +.......
T Consensus 45 ~wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 124 (430)
T 2xyi_A 45 EWPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIK 124 (430)
T ss_dssp SSCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEE
T ss_pred CCCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEE
Confidence 3778889999975 46777653 236666432 01112334
Q ss_pred ecCCC-eeEEEecCC-CCEEEEEcCCCCCCCcCCCccEEEEEEccC----------CceeeeccCCCcccccCCCCCcCC
Q 005140 251 YAHPQ-VKLIDFSPG-EKYLVTYSSHEPSNPRDANRVVINIFDVRT----------GKVMRDFKGSADEFAVGGTGGVAG 318 (712)
Q Consensus 251 ~~~~~-v~~i~~Spd-g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~----------g~~~~~~~~~~~~~~~~~~~~~~~ 318 (712)
+.|.+ |.+++|+|+ +.+|++++.+ +.|++|++.+ ...+..+.+|...+.
T Consensus 125 ~~h~~~v~~l~~~p~~~~~lat~~~d----------g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~--------- 185 (430)
T 2xyi_A 125 INHEGEVNRARYMPQNACVIATKTPS----------SDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGY--------- 185 (430)
T ss_dssp EEESSCCSEEEEETTEEEEEEEECSS----------SCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCC---------
T ss_pred EcCCCcEEEEEECCCCCcEEEEECCC----------CcEEEEECCCcccccCccccCCCcEEecCCCCCeE---------
Confidence 45654 999999997 6899999999 9999999976 566777777776653
Q ss_pred CCcCeEEecCCCCC-EEEEec-CCeEEEEEcCCcee-------cccccccccCeeeEEECC-CCCeEEEEeecCCCCCCC
Q 005140 319 VSWPVFRWGGGKDK-YFAKLG-KNMISVYETESFTL-------IDKKSLKVENVMDFSWSP-TDPIISLFVPELGGGNQP 388 (712)
Q Consensus 319 ~~~~~~~~s~~dg~-~la~~~-d~~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~sp-~~~~la~~~~~~~~~~~~ 388 (712)
+++|+| ++. +|++++ ||.|++|++.++.. ......|...|.+++|+| ++.+|++ ++.++.
T Consensus 186 ----~l~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s-----~~~dg~ 255 (430)
T 2xyi_A 186 ----GLSWNP-NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGS-----VADDQK 255 (430)
T ss_dssp ----CEEECT-TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEE-----EETTSE
T ss_pred ----EEEeCC-CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEE-----EeCCCe
Confidence 699999 988 999888 99999999986332 112224555688888888 4556655 444444
Q ss_pred eEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEE
Q 005140 389 ARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIA 468 (712)
Q Consensus 389 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~ 468 (712)
+++ |++.. .........+.+|...|++
T Consensus 256 i~i--~d~~~---------------------------------------------------~~~~~~~~~~~~~~~~v~~ 282 (430)
T 2xyi_A 256 LMI--WDTRN---------------------------------------------------NNTSKPSHTVDAHTAEVNC 282 (430)
T ss_dssp EEE--EETTC---------------------------------------------------SCSSSCSEEEECCSSCEEE
T ss_pred EEE--EECCC---------------------------------------------------CCCCcceeEeecCCCCeEE
Confidence 333 33321 1100011223467899999
Q ss_pred EEEeeCCC-EEEEEEcCCCCCeEEEEEeecccccCceeEEEEe--CCCceeEEEEccCCC-eEEEEeccCCCceEEEEEC
Q 005140 469 FAWEPKGH-RFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL--KGKQANALFWSPSGR-FIVLAGLKGFNGQLEFYNV 544 (712)
Q Consensus 469 ~~~sp~g~-~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~--~~~~v~~l~~spdg~-~l~~~~~~~~dg~v~iwd~ 544 (712)
++|+|++. .|++++.++ .|++||+++... ++..+ +...+.+++|+|+|+ +|++++. ||.|+|||+
T Consensus 283 i~~~p~~~~~l~tg~~dg---~v~vwd~~~~~~-----~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~---d~~i~iwd~ 351 (430)
T 2xyi_A 283 LSFNPYSEFILATGSADK---TVALWDLRNLKL-----KLHSFESHKDEIFQVQWSPHNETILASSGT---DRRLHVWDL 351 (430)
T ss_dssp EEECSSCTTEEEEEETTS---EEEEEETTCTTS-----CSEEEECCSSCEEEEEECSSCTTEEEEEET---TSCCEEEEG
T ss_pred EEeCCCCCCEEEEEeCCC---eEEEEeCCCCCC-----CeEEeecCCCCEEEEEECCCCCCEEEEEeC---CCcEEEEeC
Confidence 99999997 588888899 999999976432 23333 345799999999996 5777877 999999999
Q ss_pred Ccc--------------eeeee--ccccceeeEEECCCCC-EEEEEEccceeccccEEEEEecCcee
Q 005140 545 DEL--------------ETMAT--AEHFMATDVEWDPTGR-YVATAVTSVHEMENGFNIWSFNGKLL 594 (712)
Q Consensus 545 ~~~--------------~~~~~--~~~~~v~~~~~spdg~-~l~t~s~~~~~~d~~v~iw~~~g~~~ 594 (712)
... +++.. .|...|++++|+|+++ +|++++. |+.|+||++....+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~-----dg~i~iw~~~~~~~ 413 (430)
T 2xyi_A 352 SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSE-----DNIMQVWQMAENVY 413 (430)
T ss_dssp GGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEET-----TSEEEEEEECHHHH
T ss_pred CCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEEC-----CCCEEEeEcccccc
Confidence 862 33332 5667899999999999 8888888 99999999975543
No 105
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.1e-25 Score=229.76 Aligned_cols=268 Identities=12% Similarity=0.139 Sum_probs=205.1
Q ss_pred cceeeee-cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcC
Q 005140 245 FNRLMRY-AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWP 322 (712)
Q Consensus 245 ~~~~~~~-~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (712)
.+....+ .|. .|.+++| |++++|++++.+ +.|++||+.++.....+..|...+.
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~d----------g~v~vw~~~~~~~~~~~~~~~~~v~------------- 63 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRD----------GTVRLWSKDDQWLGTVVYTGQGFLN------------- 63 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETT----------SEEEEEEESSSEEEEEEEECSSCEE-------------
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcC----------CcEEEEECCCCEEEEEeecCCccEE-------------
Confidence 3444444 244 5999999 999999999999 9999999999988888888876653
Q ss_pred eEEecCCCCCEEEEec-CCeEEEEEcCCc---eecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCC
Q 005140 323 VFRWGGGKDKYFAKLG-KNMISVYETESF---TLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS 398 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~-d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~ 398 (712)
+++|+| ++++|++++ ++.|++|++... ..+.....|...|.+++| ++.+|++ ++.++.+++|
T Consensus 64 ~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~-----~~~d~~i~~~------ 129 (313)
T 3odt_A 64 SVCYDS-EKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVIS-----GSWDKTAKVW------ 129 (313)
T ss_dssp EEEEET-TTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEE-----EETTSEEEEE------
T ss_pred EEEECC-CCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEE-----EeCCCCEEEE------
Confidence 799999 999999999 999999998754 233333345556777777 4555655 4444444433
Q ss_pred ccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee-CCCE
Q 005140 399 KEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHR 477 (712)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~ 477 (712)
+ .. .....+..|...+.+++|+| ++++
T Consensus 130 -----------------------------------------------d---~~--~~~~~~~~~~~~v~~~~~~~~~~~~ 157 (313)
T 3odt_A 130 -----------------------------------------------K---EG--SLVYNLQAHNASVWDAKVVSFSENK 157 (313)
T ss_dssp -----------------------------------------------E---TT--EEEEEEECCSSCEEEEEEEETTTTE
T ss_pred -----------------------------------------------c---CC--cEEEecccCCCceeEEEEccCCCCE
Confidence 2 00 01123446789999999999 9999
Q ss_pred EEEEEcCCCCCeEEEEEeecccccCceeEEEEe---CCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--
Q 005140 478 FAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL---KGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-- 552 (712)
Q Consensus 478 l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~---~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~-- 552 (712)
|++++.++ .|++||... ....+ ....+.+++|+|++. +++++. +|.|++||+.+++.+..
T Consensus 158 l~~~~~d~---~i~i~d~~~--------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~---dg~i~i~d~~~~~~~~~~~ 222 (313)
T 3odt_A 158 FLTASADK---TIKLWQNDK--------VIKTFSGIHNDVVRHLAVVDDGH-FISCSN---DGLIKLVDMHTGDVLRTYE 222 (313)
T ss_dssp EEEEETTS---CEEEEETTE--------EEEEECSSCSSCEEEEEEEETTE-EEEEET---TSEEEEEETTTCCEEEEEE
T ss_pred EEEEECCC---CEEEEecCc--------eEEEEeccCcccEEEEEEcCCCe-EEEccC---CCeEEEEECCchhhhhhhh
Confidence 99999999 999999422 33333 344789999999998 888887 99999999998887765
Q ss_pred ccccceeeEEECCCCCEEEEEEccceeccccEEEEEec-Cceeeee--cccceeeeEEecCCCCCCChhhHHHHH
Q 005140 553 AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRT--LKDHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 553 ~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~--~~~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
.|...+++++|+|+| .|++++. |+.+++|++. +..+... +...+.+++|+|++. +++++.|+.|+
T Consensus 223 ~~~~~i~~~~~~~~~-~l~~~~~-----dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~ 290 (313)
T 3odt_A 223 GHESFVYCIKLLPNG-DIVSCGE-----DRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVR 290 (313)
T ss_dssp CCSSCEEEEEECTTS-CEEEEET-----TSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEE
T ss_pred cCCceEEEEEEecCC-CEEEEec-----CCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEE
Confidence 577899999999999 5889998 9999999986 4444433 557899999999998 66788887765
No 106
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.94 E-value=3.5e-25 Score=235.05 Aligned_cols=320 Identities=12% Similarity=0.180 Sum_probs=205.1
Q ss_pred ccchhhccCC-CCCceEEEEECCeeEEEecCCCCCCCcccc-------------cCCCcccceEEEcC-CCcEEEEEecC
Q 005140 170 ENLQKWLTDE-KARDQFVIRSGTDTEVLWNDARHLKPEPVY-------------KRSYWTESFVQWSP-LGTYLATVHRQ 234 (712)
Q Consensus 170 ~~l~~~~~~~-~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~-------------~~~~~~v~~v~~Sp-dg~~lat~~~~ 234 (712)
..+.+..++| ++ ..+++.+.++.+.+|+.. .......+ .+|...|++++|+| ++.+|++++.+
T Consensus 44 ~~v~~~~~s~~~~-~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 121 (408)
T 4a11_B 44 GGINTLDIEPVEG-RYMLSGGSDGVIVLYDLE-NSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD 121 (408)
T ss_dssp SCEEEEEECTTTC-CEEEEEETTSCEEEEECC-CCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT
T ss_pred CcEEEEEEecCCC-CEEEEEcCCCeEEEEECC-CCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC
Confidence 3455566667 44 366777889999999984 33333333 25999999999999 88899999999
Q ss_pred c-eEEeecccCcceeeeecCCC-eeEEEecCC---CCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccc
Q 005140 235 G-AAVWGGANTFNRLMRYAHPQ-VKLIDFSPG---EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFA 309 (712)
Q Consensus 235 ~-i~iw~~~~~~~~~~~~~~~~-v~~i~~Spd---g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~ 309 (712)
+ +++|+.. +...+..+.+.. +.++.|+|. +.+|++++.+ +.|++||+.+++.+..+..|...+.
T Consensus 122 ~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~v~~~d~~~~~~~~~~~~~~~~v~ 190 (408)
T 4a11_B 122 KTLKVWDTN-TLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRG----------PKVQLCDLKSGSCSHILQGHRQEIL 190 (408)
T ss_dssp SEEEEEETT-TTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESS----------SSEEEEESSSSCCCEEECCCCSCEE
T ss_pred CeEEEeeCC-CCccceeccCCCceeeeEeecCCCCCcEEEEEcCC----------CeEEEEeCCCcceeeeecCCCCcEE
Confidence 8 8899999 777777776554 999999985 4599999999 9999999999999999988877664
Q ss_pred cCCCCCcCCCCcCeEEecCCCCC-EEEEec-CCeEEEEEcCCce-eccc---------------ccccccCeeeEEECCC
Q 005140 310 VGGTGGVAGVSWPVFRWGGGKDK-YFAKLG-KNMISVYETESFT-LIDK---------------KSLKVENVMDFSWSPT 371 (712)
Q Consensus 310 ~~~~~~~~~~~~~~~~~s~~dg~-~la~~~-d~~i~iwd~~~~~-~~~~---------------~~~~~~~v~~~~~sp~ 371 (712)
+++|+| ++. +|++++ |+.|++||+.++. .+.. ...+...|.+++|+|+
T Consensus 191 -------------~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 256 (408)
T 4a11_B 191 -------------AVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD 256 (408)
T ss_dssp -------------EEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT
T ss_pred -------------EEEECC-CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC
Confidence 799999 998 477777 9999999997654 1111 1245567999999999
Q ss_pred CCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCC
Q 005140 372 DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERD 451 (712)
Q Consensus 372 ~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~ 451 (712)
+++|++ ++.++.+++ |++.+.+...........
T Consensus 257 ~~~l~~-----~~~dg~i~v--wd~~~~~~~~~~~~~~~~---------------------------------------- 289 (408)
T 4a11_B 257 GLHLLT-----VGTDNRMRL--WNSSNGENTLVNYGKVCN---------------------------------------- 289 (408)
T ss_dssp SSEEEE-----EETTSCEEE--EETTTCCBCCCCCCCCCC----------------------------------------
T ss_pred CCEEEE-----ecCCCeEEE--EECCCCccceeccccccc----------------------------------------
Confidence 999998 666666554 444433221110000000
Q ss_pred cceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEE
Q 005140 452 IPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVL 529 (712)
Q Consensus 452 ~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~ 529 (712)
.....+........+..+++++.++ .|++|++.++. .+..+.++ .|++++|+|+|++|++
T Consensus 290 ---------~~~~~~~~~~~~~~~~~~~~~~~~~---~i~v~d~~~~~------~~~~~~~~~~~v~~~~~s~~~~~l~s 351 (408)
T 4a11_B 290 ---------NSKKGLKFTVSCGCSSEFVFVPYGS---TIAVYTVYSGE------QITMLKGHYKTVDCCVFQSNFQELYS 351 (408)
T ss_dssp ---------CCSSCCCCEECCSSSSCEEEEEETT---EEEEEETTTCC------EEEEECCCSSCEEEEEEETTTTEEEE
T ss_pred ---------cccccceeEEecCCCceEEEEecCC---EEEEEECcCCc------ceeeeccCCCeEEEEEEcCCCCEEEE
Confidence 0001111111123455666777777 99999997654 56666544 7899999999999999
Q ss_pred EeccCCCceEEEEECCcceeeeeccccceeeEEECCCCCE-EEEEEccceeccccEEEEEec
Q 005140 530 AGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRY-VATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 530 ~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~-l~t~s~~~~~~d~~v~iw~~~ 590 (712)
++. ||.|++|++.+++.+....... ....++|.... +.+++. ++.+++|+..
T Consensus 352 ~~~---dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~W~~~ 404 (408)
T 4a11_B 352 GSR---DCNILAWVPSLYEPVPDDDETT-TKSQLNPAFEDAWSSSDE-----EGGTSAWSHP 404 (408)
T ss_dssp EET---TSCEEEEEECC---------------------------------------------
T ss_pred ECC---CCeEEEEeCCCCCccCCCCceE-eccccccccceeecccCc-----cCceeecCCc
Confidence 998 9999999999887765432211 22334443333 333444 8999999754
No 107
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.94 E-value=1.4e-24 Score=229.27 Aligned_cols=267 Identities=13% Similarity=0.142 Sum_probs=197.1
Q ss_pred eEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEE-EEEecCc-eEEeecccCcceeeeecCC-CeeEEE
Q 005140 184 QFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYL-ATVHRQG-AAVWGGANTFNRLMRYAHP-QVKLID 260 (712)
Q Consensus 184 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~l-at~~~~~-i~iw~~~~~~~~~~~~~~~-~v~~i~ 260 (712)
.|+..+.++.+.+|+. ..++....+..|. .+.+++|||+|++| ++++.++ |++||.. +++.+..+.+. .+.+++
T Consensus 4 l~vs~~~d~~v~v~d~-~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~-~~~~~~~~~~~~~v~~~~ 80 (391)
T 1l0q_A 4 AYIANSESDNISVIDV-TSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTA-TNNVIATVPAGSSPQGVA 80 (391)
T ss_dssp EEEEETTTTEEEEEET-TTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETT-TTEEEEEEECSSSEEEEE
T ss_pred EEEEcCCCCEEEEEEC-CCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECC-CCeEEEEEECCCCccceE
Confidence 4556667889999998 4556666666665 47999999999987 5665666 8899998 77777777543 699999
Q ss_pred ecCCCCEEEEE-cCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEE-EEec
Q 005140 261 FSPGEKYLVTY-SSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYF-AKLG 338 (712)
Q Consensus 261 ~Spdg~~l~t~-s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~l-a~~~ 338 (712)
|+|+|++|+++ +.+ +.|++||+.+++.+..+..+.... .++|+| ++++| ++++
T Consensus 81 ~spdg~~l~~~~~~~----------~~v~v~d~~~~~~~~~~~~~~~~~--------------~~~~s~-dg~~l~~~~~ 135 (391)
T 1l0q_A 81 VSPDGKQVYVTNMAS----------STLSVIDTTSNTVAGTVKTGKSPL--------------GLALSP-DGKKLYVTNN 135 (391)
T ss_dssp ECTTSSEEEEEETTT----------TEEEEEETTTTEEEEEEECSSSEE--------------EEEECT-TSSEEEEEET
T ss_pred ECCCCCEEEEEECCC----------CEEEEEECCCCeEEEEEeCCCCcc--------------eEEECC-CCCEEEEEeC
Confidence 99999988654 456 899999999999888887665443 689999 99977 5666
Q ss_pred -CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEE
Q 005140 339 -KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYW 417 (712)
Q Consensus 339 -d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (712)
++.|.+||+.+++.+..... ...+.+++|+|+++.|++. ++.+ ..|.+|++.+.+.+
T Consensus 136 ~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~----~~~~--~~v~~~d~~~~~~~--------------- 193 (391)
T 1l0q_A 136 GDKTVSVINTVTKAVINTVSV-GRSPKGIAVTPDGTKVYVA----NFDS--MSISVIDTVTNSVI--------------- 193 (391)
T ss_dssp TTTEEEEEETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEE----ETTT--TEEEEEETTTTEEE---------------
T ss_pred CCCEEEEEECCCCcEEEEEec-CCCcceEEECCCCCEEEEE----eCCC--CEEEEEECCCCeEE---------------
Confidence 99999999998877654433 3457889999999887542 2233 33444554322100
Q ss_pred CcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEc---CCCCCeEEEEE
Q 005140 418 QSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG---DSPRPDISFYS 494 (712)
Q Consensus 418 s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~---d~~~~~v~i~d 494 (712)
..+ .+...+.+++|+|+|++|++++. ++ .|++||
T Consensus 194 ---------------------------------------~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~---~v~~~d 230 (391)
T 1l0q_A 194 ---------------------------------------DTV-KVEAAPSGIAVNPEGTKAYVTNVDKYFN---TVSMID 230 (391)
T ss_dssp ---------------------------------------EEE-ECSSEEEEEEECTTSSEEEEEEECSSCC---EEEEEE
T ss_pred ---------------------------------------EEE-ecCCCccceEECCCCCEEEEEecCcCCC---cEEEEE
Confidence 001 22557788999999999999884 55 999999
Q ss_pred eecccccCceeEEEEeC-CCceeEEEEccCCCeEEEE-eccCCCceEEEEECCcceeeee
Q 005140 495 MRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLA-GLKGFNGQLEFYNVDELETMAT 552 (712)
Q Consensus 495 ~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~-~~~~~dg~v~iwd~~~~~~~~~ 552 (712)
+.++. .+..+. ...+.+++|+|+|++|+++ +. ++.|++||+.+++++..
T Consensus 231 ~~~~~------~~~~~~~~~~~~~~~~s~dg~~l~~s~~~---d~~v~v~d~~~~~~~~~ 281 (391)
T 1l0q_A 231 TGTNK------ITARIPVGPDPAGIAVTPDGKKVYVALSF---XNTVSVIDTATNTITAT 281 (391)
T ss_dssp TTTTE------EEEEEECCSSEEEEEECTTSSEEEEEETT---TTEEEEEETTTTEEEEE
T ss_pred CCCCe------EEEEEecCCCccEEEEccCCCEEEEEcCC---CCEEEEEECCCCcEEEE
Confidence 97654 444444 3357889999999988544 55 89999999998877654
No 108
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.94 E-value=1.9e-25 Score=233.45 Aligned_cols=278 Identities=12% Similarity=0.171 Sum_probs=207.3
Q ss_pred Ccceeeee-cC-CCeeEEEecCC---CCEEEEEcCCCCCCCcCCCccEEEEEEccC-Ccee-eeccCCCcccccCCCCCc
Q 005140 244 TFNRLMRY-AH-PQVKLIDFSPG---EKYLVTYSSHEPSNPRDANRVVINIFDVRT-GKVM-RDFKGSADEFAVGGTGGV 316 (712)
Q Consensus 244 ~~~~~~~~-~~-~~v~~i~~Spd---g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~-g~~~-~~~~~~~~~~~~~~~~~~ 316 (712)
....+..+ .| ..|.+++|+|+ |++|++++.+ +.|+|||+.+ +..+ ..+.+|...+.
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~d----------g~i~iw~~~~~~~~~~~~~~~h~~~v~------- 90 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWA----------NDVRCWEVQDSGQTIPKAQQMHTGPVL------- 90 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETT----------SEEEEEEECTTSCEEEEEEEECSSCEE-------
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCC----------CcEEEEEcCCCCceeEEEeccccCCEE-------
Confidence 33344433 34 45999999999 6999999999 9999999987 5555 67777877664
Q ss_pred CCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEE--CCCCCeEEEEeecCCCCCCCeEEEE
Q 005140 317 AGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSW--SPTDPIISLFVPELGGGNQPARVSL 393 (712)
Q Consensus 317 ~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~--sp~~~~la~~~~~~~~~~~~~~i~~ 393 (712)
+++|+| ++++|++++ |+.|++|++.++..+. ...|...|.+++| +|++.+|++ ++.++. |.+
T Consensus 91 ------~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~-----~~~dg~--i~v 155 (368)
T 3mmy_A 91 ------DVCWSD-DGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMT-----GSWDKT--LKF 155 (368)
T ss_dssp ------EEEECT-TSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEE-----EETTSE--EEE
T ss_pred ------EEEECc-CCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEE-----ccCCCc--EEE
Confidence 799999 999999998 9999999999888664 3357778999999 999999998 555655 556
Q ss_pred EecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee
Q 005140 394 VQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP 473 (712)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp 473 (712)
|++.+.+.+....... .. +.+...+..++++..++. +.+|++........... ..+...+.++++.+
T Consensus 156 wd~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~---------i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 222 (368)
T 3mmy_A 156 WDTRSSNPMMVLQLPE-RC--YCADVIYPMAVVATAERG---------LIVYQLENQPSEFRRIE-SPLKHQHRCVAIFK 222 (368)
T ss_dssp ECSSCSSCSEEEECSS-CE--EEEEEETTEEEEEEGGGC---------EEEEECSSSCEEEEECC-CSCSSCEEEEEEEE
T ss_pred EECCCCcEEEEEecCC-Cc--eEEEecCCeeEEEeCCCc---------EEEEEeccccchhhhcc-ccccCCCceEEEcc
Confidence 6666655544433222 22 233444567777777766 78888876543322221 13455667777777
Q ss_pred CCCE----EEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--------------ceeEEEEccCCCeEEEEeccCC
Q 005140 474 KGHR----FAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--------------QANALFWSPSGRFIVLAGLKGF 535 (712)
Q Consensus 474 ~g~~----l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--------------~v~~l~~spdg~~l~~~~~~~~ 535 (712)
++.. +++++.++ .|++|+++...... .+..+..+ .+++++|+|+|++|++++.
T Consensus 223 ~~~~~~~~~~~~~~dg---~i~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~--- 293 (368)
T 3mmy_A 223 DKQNKPTGFALGSIEG---RVAIHYINPPNPAK---DNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGS--- 293 (368)
T ss_dssp CTTSCEEEEEEEETTS---EEEEEESSCSCHHH---HSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEET---
T ss_pred cCCCCCCeEEEecCCC---cEEEEecCCCCccc---cceeeeeeecccccccccccccceEEEEEecCCCEEEEEcc---
Confidence 6655 99999999 99999997653210 12222222 5899999999999999998
Q ss_pred CceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEc
Q 005140 536 NGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 536 dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~ 575 (712)
||.|++||+.+++.+.. .|...|++++|+|+|++|++++.
T Consensus 294 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~ 335 (368)
T 3mmy_A 294 DGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASS 335 (368)
T ss_dssp TSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEEC
T ss_pred CCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEec
Confidence 99999999999888765 56689999999999999999998
No 109
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.94 E-value=4.7e-25 Score=236.59 Aligned_cols=266 Identities=15% Similarity=0.252 Sum_probs=201.4
Q ss_pred cCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccE
Q 005140 210 KRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVV 286 (712)
Q Consensus 210 ~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~ 286 (712)
.+|...|+|++| +|++||+|+.++ |++||.. +++.+..+. |. .|.+++| ++++|++|+.| +.
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~d----------g~ 194 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKN-TLECKRILTGHTGSVLCLQY--DERVIITGSSD----------ST 194 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESS-SCCEEEEECCCSSCEEEEEC--CSSEEEEEETT----------SC
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCC-CCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCC----------Ce
Confidence 456667777766 899999999999 8899998 777776663 44 4999998 88999999999 99
Q ss_pred EEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceec---ccccccccC
Q 005140 287 INIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLI---DKKSLKVEN 362 (712)
Q Consensus 287 I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~---~~~~~~~~~ 362 (712)
|++||+.+++.+..+.+|...+. ++.|++ .++++++ |+.|++||+.++... .....|...
T Consensus 195 i~vwd~~~~~~~~~~~~h~~~v~-------------~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 258 (435)
T 1p22_A 195 VRVWDVNTGEMLNTLIHHCEAVL-------------HLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 258 (435)
T ss_dssp EEEEESSSCCEEEEECCCCSCEE-------------EEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSC
T ss_pred EEEEECCCCcEEEEEcCCCCcEE-------------EEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCc
Confidence 99999999999999998877663 577765 5888888 999999999876544 223345556
Q ss_pred eeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccE
Q 005140 363 VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGF 442 (712)
Q Consensus 363 v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~ 442 (712)
|.+++| ++++|++ ++.++.+++ |++.+.+
T Consensus 259 v~~~~~--~~~~l~s-----~~~dg~i~v--wd~~~~~------------------------------------------ 287 (435)
T 1p22_A 259 VNVVDF--DDKYIVS-----ASGDRTIKV--WNTSTCE------------------------------------------ 287 (435)
T ss_dssp EEEEEE--ETTEEEE-----EETTSEEEE--EETTTCC------------------------------------------
T ss_pred EEEEEe--CCCEEEE-----EeCCCeEEE--EECCcCc------------------------------------------
Confidence 777776 5566666 444444333 2322111
Q ss_pred EEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEE
Q 005140 443 ELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFW 520 (712)
Q Consensus 443 ~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~ 520 (712)
....+.+|...|.+++| +++++++++.|+ .|++||++++. .+..+.++ .+.+++|
T Consensus 288 ------------~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg---~i~iwd~~~~~------~~~~~~~h~~~v~~~~~ 344 (435)
T 1p22_A 288 ------------FVRTLNGHKRGIACLQY--RDRLVVSGSSDN---TIRLWDIECGA------CLRVLEGHEELVRCIRF 344 (435)
T ss_dssp ------------EEEEEECCSSCEEEEEE--ETTEEEEEETTS---CEEEEETTTCC------EEEEECCCSSCEEEEEC
T ss_pred ------------EEEEEcCCCCcEEEEEe--CCCEEEEEeCCC---eEEEEECCCCC------EEEEEeCCcCcEEEEEe
Confidence 11234467888998888 578999999999 99999997654 56666654 6788888
Q ss_pred ccCCCeEEEEeccCCCceEEEEECCcce---------eee--eccccceeeEEECCCCCEEEEEEccceeccccEEEEEe
Q 005140 521 SPSGRFIVLAGLKGFNGQLEFYNVDELE---------TMA--TAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSF 589 (712)
Q Consensus 521 spdg~~l~~~~~~~~dg~v~iwd~~~~~---------~~~--~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~ 589 (712)
++.+|++++. ||.|++||+.++. .+. ..|...|++++| +|++|++++. |+.|+||++
T Consensus 345 --~~~~l~sg~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~-----Dg~i~iwd~ 412 (435)
T 1p22_A 345 --DNKRIVSGAY---DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSH-----DDTILIWDF 412 (435)
T ss_dssp --CSSEEEEEET---TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCS-----SSEEEEEC-
T ss_pred --cCCEEEEEeC---CCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeC-----CCEEEEEEC
Confidence 7899999998 9999999997654 333 367788999999 7889999999 999999998
Q ss_pred cCc
Q 005140 590 NGK 592 (712)
Q Consensus 590 ~g~ 592 (712)
...
T Consensus 413 ~~~ 415 (435)
T 1p22_A 413 LND 415 (435)
T ss_dssp ---
T ss_pred CCC
Confidence 754
No 110
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.94 E-value=1.7e-25 Score=231.56 Aligned_cols=274 Identities=9% Similarity=0.086 Sum_probs=205.5
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc---eeeeccCCCcccccCCCCCcCCCCcCeEEecCCC
Q 005140 254 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK---VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK 330 (712)
Q Consensus 254 ~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d 330 (712)
..|.+++|+|++++|++++.+ +.|+||++.++. .+..+..|...+. +++|+| +
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~d----------~~v~iw~~~~~~~~~~~~~~~~~~~~v~-------------~~~~~~-~ 67 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLITSWD----------GSLTVYKFDIQAKNVDLLQSLRYKHPLL-------------CCNFID-N 67 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEETT----------SEEEEEEEETTTTEEEEEEEEECSSCEE-------------EEEEEE-S
T ss_pred CcEEEEEEcCCCCEEEEEcCC----------CeEEEEEeCCCCccccceeeeecCCceE-------------EEEECC-C
Confidence 359999999999999999999 999999998887 3444556665553 799999 9
Q ss_pred CC-EEEEec-CCeEEEEEc-CCceecccccc--cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeee
Q 005140 331 DK-YFAKLG-KNMISVYET-ESFTLIDKKSL--KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK 405 (712)
Q Consensus 331 g~-~la~~~-d~~i~iwd~-~~~~~~~~~~~--~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 405 (712)
++ +|++++ ++.|++|++ .++.. ..... |...|.+++|+| +..|++ ++.++.+++| ++.+..
T Consensus 68 ~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s-----~~~d~~i~iw--d~~~~~----- 133 (342)
T 1yfq_A 68 TDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIA-----ASWDGLIEVI--DPRNYG----- 133 (342)
T ss_dssp SSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEE-----EETTSEEEEE--CHHHHT-----
T ss_pred CCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEE-----EcCCCeEEEE--cccccc-----
Confidence 99 999988 999999999 87655 33345 777899999999 888888 6666655554 332100
Q ss_pred eeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCC
Q 005140 406 NLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDS 485 (712)
Q Consensus 406 ~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~ 485 (712)
+....... .+. ..+ .|...|.+++|+|++ +++++.++
T Consensus 134 ---------------~~~~~~~~-----------------------~~~--~~~-~~~~~v~~~~~~~~~--l~~~~~d~ 170 (342)
T 1yfq_A 134 ---------------DGVIAVKN-----------------------LNS--NNT-KVKNKIFTMDTNSSR--LIVGMNNS 170 (342)
T ss_dssp ---------------TBCEEEEE-----------------------SCS--SSS-SSCCCEEEEEECSSE--EEEEESTT
T ss_pred ---------------cccccccC-----------------------Cee--eEE-eeCCceEEEEecCCc--EEEEeCCC
Confidence 00000000 000 011 257889999999987 88899998
Q ss_pred CCCeEEEEEeec-ccccCceeEEEEeCCCceeEEEEcc-CCCeEEEEeccCCCceEEEEECCcc------eeeee--ccc
Q 005140 486 PRPDISFYSMRT-AQHAGRVSKLTTLKGKQANALFWSP-SGRFIVLAGLKGFNGQLEFYNVDEL------ETMAT--AEH 555 (712)
Q Consensus 486 ~~~~v~i~d~~~-~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~~~~~~~~dg~v~iwd~~~~------~~~~~--~~~ 555 (712)
.|++|++++ +... ...........+.+++|+| +|+++++++. +|.|++|+++.. +.... .|.
T Consensus 171 ---~i~i~d~~~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~---dg~i~i~~~~~~~~~~~~~~~~~~~~~~ 242 (342)
T 1yfq_A 171 ---QVQWFRLPLCEDDN--GTIEESGLKYQIRDVALLPKEQEGYACSSI---DGRVAVEFFDDQGDDYNSSKRFAFRCHR 242 (342)
T ss_dssp ---EEEEEESSCCTTCC--CEEEECSCSSCEEEEEECSGGGCEEEEEET---TSEEEEEECCTTCCSTTCTTCEEEECCC
T ss_pred ---eEEEEECCcccccc--ceeeecCCCCceeEEEECCCCCCEEEEEec---CCcEEEEEEcCCCcccccccceeeeccc
Confidence 999999976 4321 1122222344789999999 9999999998 999999999865 33332 332
Q ss_pred ---------cceeeEEECCCCCEEEEEEccceeccccEEEEEec-Cceeeee--c-ccceeeeEEecCCCCCCChhhHHH
Q 005140 556 ---------FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRT--L-KDHFFQFLWRPRPPSFLTPEKEEE 622 (712)
Q Consensus 556 ---------~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~--~-~~~i~~~~w~p~~~~l~s~~~d~~ 622 (712)
..|++++|+|+|++|++++. |+.|++|++. +..+... + ...|.+++ |++.+|++++.|+.
T Consensus 243 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGS-----DGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp CCTTCCSSCCCEEEEEECTTTCCEEEEET-----TSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred ccccccccceeEEEEEEcCCCCEEEEecC-----CceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 38999999999999999999 9999999987 5555443 4 67899988 99999999999987
Q ss_pred H
Q 005140 623 I 623 (712)
Q Consensus 623 i 623 (712)
+
T Consensus 316 ~ 316 (342)
T 1yfq_A 316 F 316 (342)
T ss_dssp H
T ss_pred c
Confidence 3
No 111
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.94 E-value=3.2e-24 Score=219.42 Aligned_cols=266 Identities=19% Similarity=0.264 Sum_probs=198.7
Q ss_pred eEEEEECCeeEEEecCCCCCCCccc--ccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCCCeeEEE
Q 005140 184 QFVIRSGTDTEVLWNDARHLKPEPV--YKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQVKLID 260 (712)
Q Consensus 184 ~~~~~~~~~~~~~w~~~~~~~~~~~--~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~v~~i~ 260 (712)
.+++ +.|+++.+|+. ..++.... +.+|...|++++|+|+|++||+|+.|+ |+||+.. +++.+..+........+
T Consensus 38 ~lAv-g~D~tV~iWd~-~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~-~~~~~~~~~~h~~~~~~ 114 (318)
T 4ggc_A 38 VLAV-ALDNSVYLWSA-SSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ-QQKRLRNMTSHSARVGS 114 (318)
T ss_dssp EEEE-EETTEEEEEET-TTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEEEEECCSSCEEE
T ss_pred EEEE-EeCCEEEEEEC-CCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecC-CceeEEEecCccceEEE
Confidence 4444 45888999998 45555544 457888899999999999999999999 8899999 88877777544444456
Q ss_pred ecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC-ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-
Q 005140 261 FSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG-KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG- 338 (712)
Q Consensus 261 ~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~- 338 (712)
+++++..|++++.+ +.+++|+..++ ..+..+.+|...+. .+.|++ ++++|++++
T Consensus 115 ~~~~~~~l~s~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~-~~~~l~s~~~ 170 (318)
T 4ggc_A 115 LSWNSYILSSGSRS----------GHIHHHDVRVAEHHVATLSGHSQEVC-------------GLRWAP-DGRHLASGGN 170 (318)
T ss_dssp EEEETTEEEEEETT----------SEEEEEETTSSSCEEEEEECCSSCEE-------------EEEECT-TSSEEEEEET
T ss_pred eecCCCEEEEEecC----------CceEeeecCCCceeEEEEcCccCceE-------------EEEEcC-CCCEEEEEec
Confidence 67788999999999 99999998766 45667777766553 689999 999999998
Q ss_pred CCeEEEEEcCCceeccc----ccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeeccee
Q 005140 339 KNMISVYETESFTLIDK----KSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCK 414 (712)
Q Consensus 339 d~~i~iwd~~~~~~~~~----~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 414 (712)
|+.|++||+.+++.... ...+...|..+.++|++..++.... ++.++.+ .+|+......
T Consensus 171 d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~i--~lwd~~~~~~------------- 233 (318)
T 4ggc_A 171 DNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG--GTSDRHI--RIWNVCSGAC------------- 233 (318)
T ss_dssp TSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE--CTTTCEE--EEEETTTCCE-------------
T ss_pred CcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe--cCCCCEE--EEEecccccc-------------
Confidence 99999999987653322 2234456889999998766554321 2233333 3333221110
Q ss_pred EEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEc--CCCCCeEEE
Q 005140 415 MYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG--DSPRPDISF 492 (712)
Q Consensus 415 ~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~--d~~~~~v~i 492 (712)
.....+...+..++|+|++..++++++ |+ .|++
T Consensus 234 ------------------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~---~i~i 268 (318)
T 4ggc_A 234 ------------------------------------------LSAVDAHSQVCSILWSPHYKELISGHGFAQN---QLVI 268 (318)
T ss_dssp ------------------------------------------EEEEECSSCEEEEEEETTTTEEEEEECTTTC---CEEE
T ss_pred ------------------------------------------cccccceeeeeeeeecccccceEEEEEcCCC---EEEE
Confidence 011134677889999999999988874 66 8999
Q ss_pred EEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcc
Q 005140 493 YSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL 547 (712)
Q Consensus 493 ~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~ 547 (712)
||+.++. ++..+.+| .|++++|+|+|++|++++. ||+|+|||+...
T Consensus 269 wd~~~~~------~~~~l~gH~~~V~~l~~spdg~~l~S~s~---D~~v~iWd~~~~ 316 (318)
T 4ggc_A 269 WKYPTMA------KVAELKGHTSRVLSLTMSPDGATVASAAA---DETLRLWRCFEL 316 (318)
T ss_dssp EETTTCC------EEEEECCCSSCEEEEEECTTSSCEEEEET---TTEEEEECCSCC
T ss_pred EECCCCc------EEEEEcCCCCCEEEEEEcCCCCEEEEEec---CCeEEEEECCCC
Confidence 9997655 67777765 7999999999999999998 999999998754
No 112
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.94 E-value=1.9e-25 Score=236.99 Aligned_cols=267 Identities=15% Similarity=0.181 Sum_probs=204.7
Q ss_pred EECCeeEEEecCCCCC---CCcccccCCCcccceEEEcC-CCcEEEEEecCc-eEEeecccCc-------ceeeee-cCC
Q 005140 188 RSGTDTEVLWNDARHL---KPEPVYKRSYWTESFVQWSP-LGTYLATVHRQG-AAVWGGANTF-------NRLMRY-AHP 254 (712)
Q Consensus 188 ~~~~~~~~~w~~~~~~---~~~~~~~~~~~~v~~v~~Sp-dg~~lat~~~~~-i~iw~~~~~~-------~~~~~~-~~~ 254 (712)
.++++.+.+|+....+ .....+.+|...|++++|+| ++++||+++.|+ |+||++. +. ..+..+ .|.
T Consensus 53 ~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~-~~~~~~~~~~~~~~~~~h~ 131 (402)
T 2aq5_A 53 ASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP-DGGLVLPLREPVITLEGHT 131 (402)
T ss_dssp CSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECC-TTCCSSCBCSCSEEEECCS
T ss_pred EcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEcc-CCCCccccCCceEEecCCC
Confidence 4668899999984433 34456789999999999999 999999999999 8899998 44 333333 244
Q ss_pred -CeeEEEecCCC-CEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeec--cCCCcccccCCCCCcCCCCcCeEEecCCC
Q 005140 255 -QVKLIDFSPGE-KYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDF--KGSADEFAVGGTGGVAGVSWPVFRWGGGK 330 (712)
Q Consensus 255 -~v~~i~~Spdg-~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~d 330 (712)
.|.+++|+|++ .+|++++.| +.|++||+.+++.+..+ ..|...+. +++|+| +
T Consensus 132 ~~v~~~~~~p~~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~v~-------------~~~~~~-~ 187 (402)
T 2aq5_A 132 KRVGIVAWHPTAQNVLLSAGCD----------NVILVWDVGTGAAVLTLGPDVHPDTIY-------------SVDWSR-D 187 (402)
T ss_dssp SCEEEEEECSSBTTEEEEEETT----------SCEEEEETTTTEEEEEECTTTCCSCEE-------------EEEECT-T
T ss_pred CeEEEEEECcCCCCEEEEEcCC----------CEEEEEECCCCCccEEEecCCCCCceE-------------EEEECC-C
Confidence 59999999998 699999999 99999999999999988 67766653 799999 9
Q ss_pred CCEEEEec-CCeEEEEEcCCceecccc-cccccC-eeeEEECCCCCeEEEEeecCCC-CCCCeEEEEEecCCccc-eeee
Q 005140 331 DKYFAKLG-KNMISVYETESFTLIDKK-SLKVEN-VMDFSWSPTDPIISLFVPELGG-GNQPARVSLVQIPSKEE-LRQK 405 (712)
Q Consensus 331 g~~la~~~-d~~i~iwd~~~~~~~~~~-~~~~~~-v~~~~~sp~~~~la~~~~~~~~-~~~~~~i~~~~~~~~~~-~~~~ 405 (712)
+++|++++ |+.|++||+.++..+... ..|... +..+.|+|++.+|++ +. ......|.+|++..... +...
T Consensus 188 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----g~~~~~d~~i~iwd~~~~~~~~~~~ 262 (402)
T 2aq5_A 188 GALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTT-----GFSRMSERQVALWDTKHLEEPLSLQ 262 (402)
T ss_dssp SSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEE-----EECTTCCEEEEEEETTBCSSCSEEE
T ss_pred CCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEE-----eccCCCCceEEEEcCccccCCceEE
Confidence 99999998 999999999988877655 445544 899999999999987 41 13445666677665442 2222
Q ss_pred e-eeeecceeEEECcCCCEEEEEE-cccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEc
Q 005140 406 N-LFSVSDCKMYWQSSGDYLAVKV-DRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG 483 (712)
Q Consensus 406 ~-~~~~~~~~~~~s~~g~~l~~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~ 483 (712)
. .+......+.|+|+|.+|++.. .++. +.+|++.........+....|...|.+++|+|++.++++ .
T Consensus 263 ~~~~~~~v~~~~~s~~~~~l~~~g~~dg~---------i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~ 331 (402)
T 2aq5_A 263 ELDTSSGVLLPFFDPDTNIVYLCGKGDSS---------IRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--K 331 (402)
T ss_dssp ECCCCSSCEEEEEETTTTEEEEEETTCSC---------EEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--G
T ss_pred eccCCCceeEEEEcCCCCEEEEEEcCCCe---------EEEEEecCCCcceEeecccccCCcccceEEeccccccee--c
Confidence 2 2344566789999999997655 4655 899999875532333433346799999999999998775 4
Q ss_pred CCCCCeEEEEEeecc
Q 005140 484 DSPRPDISFYSMRTA 498 (712)
Q Consensus 484 d~~~~~v~i~d~~~~ 498 (712)
++ .+++|++.++
T Consensus 332 ~~---~~~~~~l~~~ 343 (402)
T 2aq5_A 332 CE---IARFYKLHER 343 (402)
T ss_dssp TE---EEEEEEEETT
T ss_pred ce---eEEEEEcCCC
Confidence 55 8999999764
No 113
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.7e-24 Score=231.70 Aligned_cols=272 Identities=10% Similarity=0.055 Sum_probs=194.5
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc---eeeeccCCCcccc-------------c--------
Q 005140 255 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK---VMRDFKGSADEFA-------------V-------- 310 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~---~~~~~~~~~~~~~-------------~-------- 310 (712)
.+.+++|||+|++|++++ + +.|++||+.+|+ .+..+..+..... .
T Consensus 6 p~~~v~~s~dg~~l~~~~-~----------~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (450)
T 2vdu_B 6 PLQNLLTSRDGSLVFAII-K----------NCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENK 74 (450)
T ss_dssp CCCEEEECSSSSEEEEEE-T----------TEEEEEEEETTTEEEEEEEEECCC--------------------------
T ss_pred cEEEEEecCCCCEEEEEe-C----------CeEEEEECCCCCcceeeeecCCccccccccccccchhhcccccccccccc
Confidence 478999999999777665 4 589999999999 7766664432000 0
Q ss_pred --------------------CCC-CCcCCCCcCeEEecCCCCCEE-EEec-CCeEEEEEcC--Cceeccccc--ccccCe
Q 005140 311 --------------------GGT-GGVAGVSWPVFRWGGGKDKYF-AKLG-KNMISVYETE--SFTLIDKKS--LKVENV 363 (712)
Q Consensus 311 --------------------~~~-~~~~~~~~~~~~~s~~dg~~l-a~~~-d~~i~iwd~~--~~~~~~~~~--~~~~~v 363 (712)
+.. .+..+ ...+++|+| ++++| ++++ |+.|++|++. ++..+.... .+...|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~-d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v 152 (450)
T 2vdu_B 75 KLKSNKGDSIKRTAAKVPSPGLGAPPIYS-YIRNLRLTS-DESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRP 152 (450)
T ss_dssp -------------------------CCCC-CEEEEEECT-TSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCE
T ss_pred ccccCcCccccccCccccCCCCCCCccCC-ceEEEEEcC-CCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCc
Confidence 000 00000 112689999 99996 7777 9999999998 776665443 234569
Q ss_pred eeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEE
Q 005140 364 MDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFE 443 (712)
Q Consensus 364 ~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 443 (712)
.+++|+|++++|++ ++. .+.++.|++........
T Consensus 153 ~~~~~sp~~~~l~~-----~~~--~g~v~~~~~~~~~~~~~--------------------------------------- 186 (450)
T 2vdu_B 153 NAISIAEDDTTVII-----ADK--FGDVYSIDINSIPEEKF--------------------------------------- 186 (450)
T ss_dssp EEEEECTTSSEEEE-----EET--TSEEEEEETTSCCCSSC---------------------------------------
T ss_pred eEEEEcCCCCEEEE-----EeC--CCcEEEEecCCcccccc---------------------------------------
Confidence 99999999999988 433 34456665533221100
Q ss_pred EEEEecCCcceeEEEecCCCCceEEEEEeeC---CCEEEEEEcCCCCCeEEEEEeecccccCceeEEEE-eC--CCceeE
Q 005140 444 LFRIKERDIPIEVLELDNKNDKIIAFAWEPK---GHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTT-LK--GKQANA 517 (712)
Q Consensus 444 l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~---g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~-~~--~~~v~~ 517 (712)
....+.+|...|.+++|+|+ +++|++++.|+ .|++||+.++. .+.. +. ...+.+
T Consensus 187 -----------~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~---~i~vwd~~~~~------~~~~~~~~h~~~v~~ 246 (450)
T 2vdu_B 187 -----------TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDE---HIKISHYPQCF------IVDKWLFGHKHFVSS 246 (450)
T ss_dssp -----------CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTS---CEEEEEESCTT------CEEEECCCCSSCEEE
T ss_pred -----------cceeeecccCceEEEEEcCCCCCCcEEEEEcCCC---cEEEEECCCCc------eeeeeecCCCCceEE
Confidence 00113367889999999999 99999999998 99999997654 2333 32 347899
Q ss_pred EEEccCCCeEEEEeccCCCceEEEEECCcceeeeecc---------------------------ccceeeEEECCCCCEE
Q 005140 518 LFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE---------------------------HFMATDVEWDPTGRYV 570 (712)
Q Consensus 518 l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~---------------------------~~~v~~~~~spdg~~l 570 (712)
++|+ +|++|++++. |+.|++||+.+++.+.... ...+.+++|+|+|++|
T Consensus 247 ~~~s-d~~~l~s~~~---d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l 322 (450)
T 2vdu_B 247 ICCG-KDYLLLSAGG---DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFV 322 (450)
T ss_dssp EEEC-STTEEEEEES---SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEE
T ss_pred EEEC-CCCEEEEEeC---CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEE
Confidence 9999 9999999998 9999999999887665422 2457899999999999
Q ss_pred EEEE-ccceeccccEEEEEe--c-C---ceeeee-cccceeeeEEecCCCCC
Q 005140 571 ATAV-TSVHEMENGFNIWSF--N-G---KLLYRT-LKDHFFQFLWRPRPPSF 614 (712)
Q Consensus 571 ~t~s-~~~~~~d~~v~iw~~--~-g---~~~~~~-~~~~i~~~~w~p~~~~l 614 (712)
++++ . ++.|+||++ . + ..+... ....+.+++|+|++.++
T Consensus 323 ~~~~~~-----d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v 369 (450)
T 2vdu_B 323 AFFVEA-----TKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQV 369 (450)
T ss_dssp EEEETT-----CSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETTEEEE
T ss_pred EEEECC-----CCeEEEEEeccCCCCceeeccEeccCCceEEEEecCCcEEE
Confidence 9999 6 899999999 3 3 222222 22789999999964333
No 114
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.93 E-value=1.8e-23 Score=220.83 Aligned_cols=269 Identities=14% Similarity=0.124 Sum_probs=197.4
Q ss_pred CcEEEEEecCc-eEEeecccCcceeeeec-CCCeeEEEecCCCCEE-EEEcCCCCCCCcCCCccEEEEEEccCCceeeec
Q 005140 225 GTYLATVHRQG-AAVWGGANTFNRLMRYA-HPQVKLIDFSPGEKYL-VTYSSHEPSNPRDANRVVINIFDVRTGKVMRDF 301 (712)
Q Consensus 225 g~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~~v~~i~~Spdg~~l-~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~ 301 (712)
+.++++++.++ |++||.. +++.+..+. +..+.+++|+|+|++| ++++.+ +.|++||+.+++.+..+
T Consensus 2 ~~l~vs~~~d~~v~v~d~~-~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d----------~~i~v~d~~~~~~~~~~ 70 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVT-SNKVTATIPVGSNPMGAVISPDGTKVYVANAHS----------NDVSIIDTATNNVIATV 70 (391)
T ss_dssp EEEEEEETTTTEEEEEETT-TTEEEEEEECSSSEEEEEECTTSSEEEEEEGGG----------TEEEEEETTTTEEEEEE
T ss_pred CEEEEEcCCCCEEEEEECC-CCeEEEEeecCCCcceEEECCCCCEEEEECCCC----------CeEEEEECCCCeEEEEE
Confidence 34677788787 8899999 777777665 5569999999999987 566677 89999999999999888
Q ss_pred cCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEe
Q 005140 302 KGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFV 379 (712)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~ 379 (712)
..+.... .++|+| ++++|+.++ ++.|.+||+.+++.+.... ....+.+++|+|+++.|++.
T Consensus 71 ~~~~~v~--------------~~~~sp-dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~- 133 (391)
T 1l0q_A 71 PAGSSPQ--------------GVAVSP-DGKQVYVTNMASSTLSVIDTTSNTVAGTVK-TGKSPLGLALSPDGKKLYVT- 133 (391)
T ss_dssp ECSSSEE--------------EEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEE-
T ss_pred ECCCCcc--------------ceEECC-CCCEEEEEECCCCEEEEEECCCCeEEEEEe-CCCCcceEEECCCCCEEEEE-
Confidence 7766333 699999 999886554 7999999999887765443 33468899999999987542
Q ss_pred ecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEe
Q 005140 380 PELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL 459 (712)
Q Consensus 380 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 459 (712)
++.++ .|.+|+..+.+.+ ..+
T Consensus 134 ---~~~~~--~v~~~d~~~~~~~------------------------------------------------------~~~ 154 (391)
T 1l0q_A 134 ---NNGDK--TVSVINTVTKAVI------------------------------------------------------NTV 154 (391)
T ss_dssp ---ETTTT--EEEEEETTTTEEE------------------------------------------------------EEE
T ss_pred ---eCCCC--EEEEEECCCCcEE------------------------------------------------------EEE
Confidence 33333 4444544322110 011
Q ss_pred cCCCCceEEEEEeeCCCEEEEEE-cCCCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCc
Q 005140 460 DNKNDKIIAFAWEPKGHRFAVIH-GDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNG 537 (712)
Q Consensus 460 ~~h~~~v~~~~~sp~g~~l~~~~-~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg 537 (712)
.. ...+.+++|+|+|+++++++ .++ .|++||+.++. .+..+. ...+.+++|+|+|++|++++.+..++
T Consensus 155 ~~-~~~~~~~~~~~dg~~l~~~~~~~~---~v~~~d~~~~~------~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 224 (391)
T 1l0q_A 155 SV-GRSPKGIAVTPDGTKVYVANFDSM---SISVIDTVTNS------VIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFN 224 (391)
T ss_dssp EC-CSSEEEEEECTTSSEEEEEETTTT---EEEEEETTTTE------EEEEEECSSEEEEEEECTTSSEEEEEEECSSCC
T ss_pred ec-CCCcceEEECCCCCEEEEEeCCCC---EEEEEECCCCe------EEEEEecCCCccceEECCCCCEEEEEecCcCCC
Confidence 11 34568899999999886554 456 89999997654 333333 34678999999999999887321289
Q ss_pred eEEEEECCcceeeeec-cccceeeEEECCCCCEEEEE-EccceeccccEEEEEec-Cceee
Q 005140 538 QLEFYNVDELETMATA-EHFMATDVEWDPTGRYVATA-VTSVHEMENGFNIWSFN-GKLLY 595 (712)
Q Consensus 538 ~v~iwd~~~~~~~~~~-~~~~v~~~~~spdg~~l~t~-s~~~~~~d~~v~iw~~~-g~~~~ 595 (712)
.|++||+.+++.+... .+..+.+++|+|+|++|+.+ +. |+.+++|++. +..+.
T Consensus 225 ~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~-----d~~v~v~d~~~~~~~~ 280 (391)
T 1l0q_A 225 TVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSF-----XNTVSVIDTATNTITA 280 (391)
T ss_dssp EEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETT-----TTEEEEEETTTTEEEE
T ss_pred cEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCC-----CCEEEEEECCCCcEEE
Confidence 9999999988776653 34567899999999988544 55 8999999987 44443
No 115
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=3.9e-24 Score=227.22 Aligned_cols=310 Identities=13% Similarity=0.167 Sum_probs=215.9
Q ss_pred CeeEEEecCCCC-EEEEEcCCCCCCCcCCCcc----EEEEEEc--cCCcee--eeccCCCcccccCCCCCcCCCCcCeEE
Q 005140 255 QVKLIDFSPGEK-YLVTYSSHEPSNPRDANRV----VINIFDV--RTGKVM--RDFKGSADEFAVGGTGGVAGVSWPVFR 325 (712)
Q Consensus 255 ~v~~i~~Spdg~-~l~t~s~d~~~~~~~~~~~----~I~iwd~--~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (712)
.+....|++.|. ++++|+.... .+| .|+|||+ .+++.+ ..+.+|...+. .++
T Consensus 64 ~~~~~~w~~~g~~~~~~g~~~~~------~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~-------------~~~ 124 (415)
T 2hqs_A 64 EVQPAAWSALGIDAVVVGQVTPN------PDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLR-------------YAG 124 (415)
T ss_dssp GCCHHHHHTTTCCEEEEEEEEEC------TTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHH-------------HHH
T ss_pred CcCHHHHHhcCCCEEEEEEEEEC------CCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHH-------------HHH
Confidence 477888999885 5557763200 015 8999999 999877 44766654431 122
Q ss_pred ec--------------CCCCCEEEEec-C------CeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCC
Q 005140 326 WG--------------GGKDKYFAKLG-K------NMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGG 384 (712)
Q Consensus 326 ~s--------------~~dg~~la~~~-d------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~ 384 (712)
++ + .+..+++++ + +.|++||+.... ......+...+.+++|||+|+.|++. +
T Consensus 125 ~~~~d~~~~~~~g~~~~-~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l~~~~~~v~~~~~Spdg~~la~~-----s 197 (415)
T 2hqs_A 125 HTASDEVFEKLTGIKGA-FRTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYV-----T 197 (415)
T ss_dssp HHHHHHHHHHHHSSCCC-TTCEEEEEEECSSSSCCEEEEEEETTSCS-CEEEEEESSCEEEEEECTTSSEEEEE-----E
T ss_pred HHHHHHHHHHHcCCCCc-CCCEEEEEEecCCCCccceEEEEcCCCCC-CEEEeCCCCcceeeEEcCCCCEEEEE-----E
Confidence 22 2 266666665 3 799999997543 33344566679999999999999983 3
Q ss_pred CC-CCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEc-ccccccccccccEEEEEEecCCcceeEEEecCC
Q 005140 385 GN-QPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVD-RYTKTKKSTYTGFELFRIKERDIPIEVLELDNK 462 (712)
Q Consensus 385 ~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h 462 (712)
.+ +...|++|++.+.+... ...+......+.|+|+|++|++... ++. ..+.+|++.. ... ..+..|
T Consensus 198 ~~~~~~~i~~~d~~tg~~~~-l~~~~~~~~~~~~spdg~~la~~~~~~g~-------~~i~~~d~~~--~~~--~~l~~~ 265 (415)
T 2hqs_A 198 FESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGS-------LNLYVMDLAS--GQI--RQVTDG 265 (415)
T ss_dssp CTTSSCEEEEEETTTCCEEE-EECCSSCEEEEEECTTSSEEEEEECTTSS-------CEEEEEETTT--CCE--EECCCC
T ss_pred ecCCCcEEEEEECCCCcEEE-eecCCCcccCEEEcCCCCEEEEEEecCCC-------ceEEEEECCC--CCE--EeCcCC
Confidence 33 45688899988766432 2223344567899999999986543 322 1244445433 222 456678
Q ss_pred CCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEE
Q 005140 463 NDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFY 542 (712)
Q Consensus 463 ~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iw 542 (712)
...+.+++|+|+|++|++++.++....|++|++.++.. .........+.+++|||+|++|++++....++.|++|
T Consensus 266 ~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-----~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~ 340 (415)
T 2hqs_A 266 RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-----QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQ 340 (415)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-----EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEE
T ss_pred CCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-----EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEE
Confidence 88999999999999999998754334677778765431 1112234567899999999999998763224689999
Q ss_pred ECCcceeeeeccccceeeEEECCCCCEEEEEEccceeccc---cEEEEEecCceeeee--cccceeeeEEecCCC
Q 005140 543 NVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMEN---GFNIWSFNGKLLYRT--LKDHFFQFLWRPRPP 612 (712)
Q Consensus 543 d~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~---~v~iw~~~g~~~~~~--~~~~i~~~~w~p~~~ 612 (712)
|+.+++......+..+.+++|+|||++|++++. ++ .+++|++.|..+... +.+.+.+++|+|.-.
T Consensus 341 d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~s~-----~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 341 DLATGGVQVLSSTFLDETPSLAPNGTMVIYSSS-----QGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp ETTTCCEEECCCSSSCEEEEECTTSSEEEEEEE-----ETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCCCC
T ss_pred ECCCCCEEEecCCCCcCCeEEcCCCCEEEEEEc-----CCCccEEEEEECCCCcEEEeeCCCCCCcCCccccccc
Confidence 999877655444458899999999999999988 55 799999998766655 557899999999643
No 116
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=6e-25 Score=251.79 Aligned_cols=252 Identities=15% Similarity=0.223 Sum_probs=198.8
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc--CCceeeeccCCCcccccCCCCCcCCCCcCeEEecCC
Q 005140 252 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR--TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGG 329 (712)
Q Consensus 252 ~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 329 (712)
|...|.+++|||+|++|++++.+ |.|+|||+. ++..+..+.+|...+. +++|+|
T Consensus 8 H~~~V~~l~~s~dg~~latg~~d----------g~I~vwd~~~~~~~~~~~l~~h~~~V~-------------~l~~s~- 63 (753)
T 3jro_A 8 HNELIHDAVLDYYGKRLATCSSD----------KTIKIFEVEGETHKLIDTLTGHEGPVW-------------RVDWAH- 63 (753)
T ss_dssp CCCCEEEECCCSSSCCEEEEETT----------TEEEEEEEETTEEEEEEEECCCSSCEE-------------EEEECC-
T ss_pred CcceeEEEEECCCCCeEEEEECC----------CcEEEEecCCCCCccceeccCCcCceE-------------EEEecC-
Confidence 44459999999999999999999 999999997 5677888988887764 799998
Q ss_pred C--CCEEEEec-CCeEEEEEcCCce--ecccccccccCeeeEEECCC--CCeEEEEeecCCCCCCCeEEEEEecCCccce
Q 005140 330 K--DKYFAKLG-KNMISVYETESFT--LIDKKSLKVENVMDFSWSPT--DPIISLFVPELGGGNQPARVSLVQIPSKEEL 402 (712)
Q Consensus 330 d--g~~la~~~-d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~--~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~ 402 (712)
+ +++|++++ ||.|++|++.++. .+.....|...|.+++|+|+ +..+++ ++.++.+++|.+........
T Consensus 64 ~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~s-----gs~dg~I~vwdl~~~~~~~~ 138 (753)
T 3jro_A 64 PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLV-----ASSDGKVSVVEFKENGTTSP 138 (753)
T ss_dssp TTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEE-----EETTSEEEEEECCSSSCCCC
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEE-----EeCCCcEEEEEeecCCCcce
Confidence 8 99999999 9999999999876 44445567778999999999 999998 66777766665544432333
Q ss_pred eeeeeeeecceeEEECc-------------CCCEEEEEEcccccccccccccEEEEEEecCCcc-eeEEEecCCCCceEE
Q 005140 403 RQKNLFSVSDCKMYWQS-------------SGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIP-IEVLELDNKNDKIIA 468 (712)
Q Consensus 403 ~~~~~~~~~~~~~~~s~-------------~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~l~~h~~~v~~ 468 (712)
.....+......+.|+| ++.++++++.++. +.+|++...... .....+.+|...|.+
T Consensus 139 ~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~---------I~iwd~~~~~~~~~~~~~~~~h~~~V~~ 209 (753)
T 3jro_A 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL---------VKIWKYNSDAQTYVLESTLEGHSDWVRD 209 (753)
T ss_dssp EEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSC---------EEEEEEETTTTEEEEEEEECCCSSCEEE
T ss_pred eEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCe---------EEEEeccCCcccceeeeeecCCCCcEEE
Confidence 33334455667788999 5899999999887 899999875443 233457789999999
Q ss_pred EEEeeC---CCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEe--CCCceeEEEEccCCCeEEEEeccCCCceEEEEE
Q 005140 469 FAWEPK---GHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL--KGKQANALFWSPSGRFIVLAGLKGFNGQLEFYN 543 (712)
Q Consensus 469 ~~~sp~---g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~--~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd 543 (712)
++|+|+ +++|++++.|+ .|++||+.++...... .+... ....+++++|+|+|++|++++. ||.|++|+
T Consensus 210 l~~sp~~~~~~~l~s~s~Dg---~I~iwd~~~~~~~~~~-~~~~~~~~~~~v~~l~~spdg~~l~s~s~---Dg~I~vwd 282 (753)
T 3jro_A 210 VAWSPTVLLRSYLASVSQDR---TCIIWTQDNEQGPWKK-TLLKEEKFPDVLWRASWSLSGNVLALSGG---DNKVTLWK 282 (753)
T ss_dssp EEECCCCSSSEEEEEEESSS---CEEEEEESSSSSCCBC-CBSSSSCCSSCCCCEEECTTTCCEEEECS---SSCEECCB
T ss_pred EEeccCCCCCCEEEEEecCC---EEEEecCCCCCCccee-EEeccCCCCCceEEEEEcCCCCEEEEEcC---CCEEEEEe
Confidence 999999 89999999999 9999999875421110 11111 2336899999999999999998 99999999
Q ss_pred CCcce
Q 005140 544 VDELE 548 (712)
Q Consensus 544 ~~~~~ 548 (712)
+....
T Consensus 283 ~~~~~ 287 (753)
T 3jro_A 283 ENLEG 287 (753)
T ss_dssp CCSSS
T ss_pred cCCCC
Confidence 98543
No 117
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.93 E-value=6.1e-25 Score=231.99 Aligned_cols=262 Identities=10% Similarity=0.063 Sum_probs=166.2
Q ss_pred ccceEEEcCCCcEEEEEecCc-eEEeecccCcceee-----ee-cCC-CeeEEEecC--------CCCEEEEEcCCCCCC
Q 005140 215 TESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLM-----RY-AHP-QVKLIDFSP--------GEKYLVTYSSHEPSN 278 (712)
Q Consensus 215 ~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~-----~~-~~~-~v~~i~~Sp--------dg~~l~t~s~d~~~~ 278 (712)
......+++++.+||+++.|+ |+||+.. ...... .+ .|. .|.+++|+| ||++||+++.|
T Consensus 91 ~~~~~~~~~~~~~las~~~d~~v~lw~~~-~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D---- 165 (393)
T 4gq1_A 91 DGNVNSSPVYSLFLACVCQDNTVRLIITK-NETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD---- 165 (393)
T ss_dssp ------CCEEEEEEEEEETTSCEEEEEEE-TTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT----
T ss_pred CcceeecCCCCCEEEEEeCCCcEEEEECC-CCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC----
Confidence 334455566788999999999 8899998 544322 12 244 499999998 89999999999
Q ss_pred CcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCC-EEEEec-CCeEEEEEcCCceecccc
Q 005140 279 PRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK-YFAKLG-KNMISVYETESFTLIDKK 356 (712)
Q Consensus 279 ~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~-~la~~~-d~~i~iwd~~~~~~~~~~ 356 (712)
++|+|||+.++..+..+..|...+. +++|+| ++. +|++++ |++|++||+.++......
T Consensus 166 ------~tv~~Wd~~~~~~~~~~~~~~~~v~-------------~v~~~p-~~~~~l~~~~~d~~v~~wd~~t~~~~~~~ 225 (393)
T 4gq1_A 166 ------CTLIIWRLTDEGPILAGYPLSSPGI-------------SVQFRP-SNPNQLIVGERNGNIRIFDWTLNLSAEEN 225 (393)
T ss_dssp ------SEEEEEEEETTEEEEEEEECSSCEE-------------EEEEET-TEEEEEEEEETTSEEEEEETTCCC-----
T ss_pred ------CeEEEEECCCCceeeeecCCCCCcE-------------EEEECC-CCCceEEecCCCCEEEEEECCCCcccccc
Confidence 9999999988888777777766653 799999 875 788888 999999999876543221
Q ss_pred cccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccc
Q 005140 357 SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKK 436 (712)
Q Consensus 357 ~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~ 436 (712)
..+........++ ....+...
T Consensus 226 ~~~~~~~~~~~~s---------------------------------------------~~~~~~~~-------------- 246 (393)
T 4gq1_A 226 SQTELVKNPWLLT---------------------------------------------LNTLPLVN-------------- 246 (393)
T ss_dssp -----CSCCCSEE---------------------------------------------EESGGGC---------------
T ss_pred cccCCcccceEEe---------------------------------------------ccccccee--------------
Confidence 1110000000000 00000000
Q ss_pred cccccEEEEEEecCCcceeEEEecCCCCceEEEEEe-eCCCEEEEEEcCCCCCeEEEEEeecccccCceeE---------
Q 005140 437 STYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWE-PKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSK--------- 506 (712)
Q Consensus 437 ~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~s-p~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~--------- 506 (712)
.....+|...+.+++|+ |+|+.|++++.|+ .+++||+..+.....+..
T Consensus 247 -------------------~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~---~i~vwd~~~~~~~~~l~~~~~~~~~~~ 304 (393)
T 4gq1_A 247 -------------------TCHSSGIASSLANVRWIGSDGSGILAMCKSG---AWLRWNLFANNDYNEISDSTMKLGPKN 304 (393)
T ss_dssp ------------------------CCSSSCSEEEEETTTTCEEEEECTTS---EEEEEEC-------------------C
T ss_pred -------------------eeecccccccceeeeeecCCCCEEEEEeCCC---CEEEEECccCCCCceEeeecCccccEE
Confidence 01122567778888887 6889999888888 899999865432111000
Q ss_pred ----EEEeC-CCceeEEEEcc--CCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccc
Q 005140 507 ----LTTLK-GKQANALFWSP--SGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSV 577 (712)
Q Consensus 507 ----~~~~~-~~~v~~l~~sp--dg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~ 577 (712)
..... ........|+| ++.++++++. ||.|++||+.+++.+.. .|...|++++|||||++||+++.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~---Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~-- 379 (393)
T 4gq1_A 305 LLPNVQGISLFPSLLGACPHPRYMDYFATAHSQ---HGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATE-- 379 (393)
T ss_dssp CSCSEEEECSSCCSSCCEECSSCTTEEEEEETT---TTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEES--
T ss_pred EccccccccccCcceeEEEccCCCCEEEEEECC---CCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeC--
Confidence 00111 01122234444 3345566666 99999999998776543 66789999999999999999976
Q ss_pred eeccccEEEEEecC
Q 005140 578 HEMENGFNIWSFNG 591 (712)
Q Consensus 578 ~~~d~~v~iw~~~g 591 (712)
+++.+|.+.|
T Consensus 380 ----~Gv~lvrL~g 389 (393)
T 4gq1_A 380 ----GSVLLTRLMG 389 (393)
T ss_dssp ----SEEEEEEEGG
T ss_pred ----CCeEEEEEeC
Confidence 6788888765
No 118
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=3.2e-23 Score=238.25 Aligned_cols=335 Identities=9% Similarity=0.061 Sum_probs=216.0
Q ss_pred cccceEEEcCCCcEEEEEec-Cc------eEEeecccCcceeeeecC--------------------------CCeeEEE
Q 005140 214 WTESFVQWSPLGTYLATVHR-QG------AAVWGGANTFNRLMRYAH--------------------------PQVKLID 260 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~-~~------i~iw~~~~~~~~~~~~~~--------------------------~~v~~i~ 260 (712)
..+++++|||||++||+++. ++ |.+|+.. +++....+.+ ..|.+++
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIG-SGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETT-TCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECC-CCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 46789999999999999987 64 7799998 5554433321 1278999
Q ss_pred ecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc--eeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec
Q 005140 261 FSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK--VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG 338 (712)
Q Consensus 261 ~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~ 338 (712)
|||||++|++++. +.|++||+.++. .++.+..+...+. .++||| ||++|++++
T Consensus 116 ~SpDg~~l~~~~~-----------~~i~~~d~~~~~~~~~~~l~~~~~~~~-------------~~~~SP-DG~~la~~~ 170 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-----------GELYLYDLKQEGKAAVRQLTHGEGFAT-------------DAKLSP-KGGFVSFIR 170 (741)
T ss_dssp ECTTSSEEEEEET-----------TEEEEEESSSCSTTSCCBCCCSSSCEE-------------EEEECT-TSSEEEEEE
T ss_pred ECCCCCEEEEEeC-----------CcEEEEECCCCCcceEEEcccCCcccc-------------cccCCC-CCCEEEEEe
Confidence 9999999999885 379999998873 3445555543332 689999 999999999
Q ss_pred CCeEEEEEcCCceeccccccccc----------------CeeeEEECCCCCeEEEEeecC--------------------
Q 005140 339 KNMISVYETESFTLIDKKSLKVE----------------NVMDFSWSPTDPIISLFVPEL-------------------- 382 (712)
Q Consensus 339 d~~i~iwd~~~~~~~~~~~~~~~----------------~v~~~~~sp~~~~la~~~~~~-------------------- 382 (712)
++.|.+|++.++........+.. .+..++|||||++|++.....
T Consensus 171 ~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~ 250 (741)
T 2ecf_A 171 GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIE 250 (741)
T ss_dssp TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEE
T ss_pred CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceE
Confidence 88999999998765432222211 147899999999999853321
Q ss_pred ------CCCCCCeEEEEEecCC-ccceeeee--eeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcc
Q 005140 383 ------GGGNQPARVSLVQIPS-KEELRQKN--LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIP 453 (712)
Q Consensus 383 ------~~~~~~~~i~~~~~~~-~~~~~~~~--~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 453 (712)
+..+....|++|++.+ .+...... .+......+.| |+|++|++...+... ....+.+|++.. ..
T Consensus 251 ~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~----~~~~i~~~d~~~--g~ 323 (741)
T 2ecf_A 251 QRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQ----KKLDLVEVTLAS--NQ 323 (741)
T ss_dssp EECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTS----SEEEEEEEETTT--CC
T ss_pred eecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccC----CeEEEEEEECCC--Cc
Confidence 0012334888888877 55332211 12334456789 999999987653220 011244444433 22
Q ss_pred eeEEEecCCCC----ceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC--CceeEE-EEccCCCe
Q 005140 454 IEVLELDNKND----KIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG--KQANAL-FWSPSGRF 526 (712)
Q Consensus 454 ~~~~~l~~h~~----~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~v~~l-~~spdg~~ 526 (712)
...+ +..+.. .+.+++|+|||++++++..++ .+.||.++... . ...+.. ..+..+ .|||+|+.
T Consensus 324 ~~~~-~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g---~~~l~~~~~~~---~---~~~l~~~~~~v~~~~~~s~dg~~ 393 (741)
T 2ecf_A 324 QRVL-AHETSPTWVPLHNSLRFLDDGSILWSSERTG---FQHLYRIDSKG---K---AAALTHGNWSVDELLAVDEKAGL 393 (741)
T ss_dssp EEEE-EEEECSSCCCCCSCCEECTTSCEEEEECTTS---SCEEEEECSSS---C---EEESCCSSSCEEEEEEEETTTTE
T ss_pred eEEE-EEcCCCCcCCcCCceEECCCCeEEEEecCCC---ccEEEEEcCCC---C---eeeeeecceEEEeEeEEeCCCCE
Confidence 2111 212222 456899999999777776666 56677664211 1 233333 246666 69999998
Q ss_pred EEEEeccCCCceEEEEECCc-ceeeee-ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCc
Q 005140 527 IVLAGLKGFNGQLEFYNVDE-LETMAT-AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK 592 (712)
Q Consensus 527 l~~~~~~~~dg~v~iwd~~~-~~~~~~-~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~ 592 (712)
|++.+..+....++||++.. +..... .....+..++|||||++|++...+. .....+.+|+..+.
T Consensus 394 l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~-~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 394 AYFRAGIESARESQIYAVPLQGGQPQRLSKAPGMHSASFARNASVYVDSWSNN-STPPQIELFRANGE 460 (741)
T ss_dssp EEEEECSSCTTCBEEEEEETTCCCCEECCCSCSEEEEEECTTSSEEEEEEEET-TEEEEEEEEETTSC
T ss_pred EEEEEeCCCCceEEEEEEEcCCCCeeecccCCCceEEEECCCCCEEEEEecCC-CCCCeEEEEEcCCC
Confidence 87665421122888998763 332222 2245678999999999998876520 01246777876543
No 119
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.93 E-value=1.7e-23 Score=248.89 Aligned_cols=355 Identities=9% Similarity=-0.002 Sum_probs=233.9
Q ss_pred cchhhccCCCCCceEEEEE-----CCeeEEEecCCCCCCCcccccCCCccc-------ceEEEcCCCcEEEEEecC----
Q 005140 171 NLQKWLTDEKARDQFVIRS-----GTDTEVLWNDARHLKPEPVYKRSYWTE-------SFVQWSPLGTYLATVHRQ---- 234 (712)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~-----~~~~~~~w~~~~~~~~~~~~~~~~~~v-------~~v~~Spdg~~lat~~~~---- 234 (712)
.......+|+|+....+.. ++..+.+|+.. ......++.|...+ .+++|||||+++++++.+
T Consensus 54 ~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~--~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~ 131 (1045)
T 1k32_A 54 VINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGE--NGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFS 131 (1045)
T ss_dssp EEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETT--TTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSST
T ss_pred cccCeEECCCCCEEEEEEeeccCCCCCeEEEEECC--CCCeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCc
Confidence 3445667888885544433 33466688873 33456788888888 899999999977777654
Q ss_pred c---eEEeecccCcceeeeec--------------------------------------------------CC-CeeEEE
Q 005140 235 G---AAVWGGANTFNRLMRYA--------------------------------------------------HP-QVKLID 260 (712)
Q Consensus 235 ~---i~iw~~~~~~~~~~~~~--------------------------------------------------~~-~v~~i~ 260 (712)
+ +.+|+.. ++....... |. .+.++.
T Consensus 132 ~~~~l~~~~~~-~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~ 210 (1045)
T 1k32_A 132 SMTCLYRVEND-GINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPV 210 (1045)
T ss_dssp TCCEEEEEEGG-GTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEE
T ss_pred ccceEEEEECC-CCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceE
Confidence 2 5677766 333211111 11 144445
Q ss_pred ecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC-CceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecC
Q 005140 261 FSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT-GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGK 339 (712)
Q Consensus 261 ~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d 339 (712)
|+++ .++++++.+ +.+.||.+.. +...+.+..+... ..++||| ||++|+++.+
T Consensus 211 ~s~d-~l~~~~~~d----------g~~~l~~~~~~g~~~~~l~~~~~~--------------~~~~~Sp-DG~~la~~~~ 264 (1045)
T 1k32_A 211 IVGH-RIYFITDID----------GFGQIYSTDLDGKDLRKHTSFTDY--------------YPRHLNT-DGRRILFSKG 264 (1045)
T ss_dssp EETT-EEEEEECTT----------SSCEEEEEETTSCSCEECCCCCSS--------------CEEEEEE-SSSCEEEEET
T ss_pred EeCC-EEEEEEecc----------CceEEEEEeCCCCcceEecCCCCc--------------ceeeEcC-CCCEEEEEeC
Confidence 5554 333333333 4555665532 3344445444322 2579999 9999999899
Q ss_pred CeEEEEEcCCceecccccc-----------cccCeeeEEEC-CCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeee
Q 005140 340 NMISVYETESFTLIDKKSL-----------KVENVMDFSWS-PTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL 407 (712)
Q Consensus 340 ~~i~iwd~~~~~~~~~~~~-----------~~~~v~~~~~s-p~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 407 (712)
+.|.+|++....+. .... +...+.+++|| |+|+.|++ ++ ...+++++......... ..
T Consensus 265 ~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~-----~~---~~~i~~~~~~~~~~~~~-~~ 334 (1045)
T 1k32_A 265 GSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAF-----VS---RGQAFIQDVSGTYVLKV-PE 334 (1045)
T ss_dssp TEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEE-----EE---TTEEEEECTTSSBEEEC-SC
T ss_pred CEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEE-----EE---cCEEEEEcCCCCceEEc-cC
Confidence 99999998543332 2211 22358899999 99999998 33 34678888766543321 11
Q ss_pred eee-cceeEEECcCCCEEEEEEcccccccccccccEEEE-EEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCC
Q 005140 408 FSV-SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELF-RIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDS 485 (712)
Q Consensus 408 ~~~-~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~-~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~ 485 (712)
+.. ....+.|+ +|+.|++++.+. .+| ..+..+... ..+.+|...+.+++|||||++|++++.++
T Consensus 335 ~~~~~~~~~~~s-dg~~l~~~s~~~-----------~l~~~~d~~~~~~--~~l~~~~~~~~~~~~SpDG~~la~~~~~~ 400 (1045)
T 1k32_A 335 PLRIRYVRRGGD-TKVAFIHGTREG-----------DFLGIYDYRTGKA--EKFEENLGNVFAMGVDRNGKFAVVANDRF 400 (1045)
T ss_dssp CSCEEEEEECSS-SEEEEEEEETTE-----------EEEEEEETTTCCE--EECCCCCCSEEEEEECTTSSEEEEEETTS
T ss_pred CCcceEEeeeEc-CCCeEEEEECCC-----------ceEEEEECCCCCc--eEecCCccceeeeEECCCCCEEEEECCCC
Confidence 222 44567899 999999887632 455 333322222 33447778999999999999999999988
Q ss_pred CCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEecc-------CCCceEEEEECCcceeeee-ccccc
Q 005140 486 PRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLK-------GFNGQLEFYNVDELETMAT-AEHFM 557 (712)
Q Consensus 486 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~-------~~dg~v~iwd~~~~~~~~~-~~~~~ 557 (712)
.|++||+.++.. ..+.......+.+++|||||++|++++.. ..++.|++||+.+++.... .+...
T Consensus 401 ---~v~~~d~~tg~~----~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~ 473 (1045)
T 1k32_A 401 ---EIMTVDLETGKP----TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSH 473 (1045)
T ss_dssp ---EEEEEETTTCCE----EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSB
T ss_pred ---eEEEEECCCCce----EEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcc
Confidence 999999976542 23322334467899999999999988751 1135999999998774433 45567
Q ss_pred eeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 558 ATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 558 v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
+..++|+|||++|++++. ++...+|+..
T Consensus 474 ~~~~~~spdG~~l~~~s~-----~~~~~~~~~~ 501 (1045)
T 1k32_A 474 DYAPAFDADSKNLYYLSY-----RSLDPSPDRV 501 (1045)
T ss_dssp EEEEEECTTSCEEEEEES-----CCCCCEECSS
T ss_pred cCCceEcCCCCEEEEEec-----ccCCcCcchh
Confidence 888999999999999998 6777777654
No 120
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=5.9e-25 Score=251.89 Aligned_cols=251 Identities=14% Similarity=0.163 Sum_probs=195.8
Q ss_pred ccccCCCcccceEEEcCCCcEEEEEecCc-eEEeeccc-Ccceeeee-cCC-CeeEEEecCC--CCEEEEEcCCCCCCCc
Q 005140 207 PVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGAN-TFNRLMRY-AHP-QVKLIDFSPG--EKYLVTYSSHEPSNPR 280 (712)
Q Consensus 207 ~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~-~~~~~~~~-~~~-~v~~i~~Spd--g~~l~t~s~d~~~~~~ 280 (712)
..+.+|...|++++|||+|++||+++.+| |+||+..+ +...+..+ .|. .|.+++|+|+ +++|++++.|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D------ 76 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD------ 76 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT------
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCC------
Confidence 45789999999999999999999999999 88999862 23344444 244 5999999998 9999999999
Q ss_pred CCCccEEEEEEccCCc--eeeeccCCCcccccCCCCCcCCCCcCeEEecCCC--CCEEEEec-CCeEEEEEcCCceecc-
Q 005140 281 DANRVVINIFDVRTGK--VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK--DKYFAKLG-KNMISVYETESFTLID- 354 (712)
Q Consensus 281 ~~~~~~I~iwd~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d--g~~la~~~-d~~i~iwd~~~~~~~~- 354 (712)
+.|++||+.+++ .+..+.+|...+. +++|+| + ++++++++ |+.|++|++.++....
T Consensus 77 ----g~I~vwd~~~~~~~~~~~~~~h~~~V~-------------~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~~~~~ 138 (753)
T 3jro_A 77 ----GKVLIWKEENGRWSQIAVHAVHSASVN-------------SVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSP 138 (753)
T ss_dssp ----SCEEEEEEETTEEEEEEEECCCSSCEE-------------EEEECC-GGGCSEEEEEETTSEEEEEECCSSSCCCC
T ss_pred ----CeEEEEECCCCcccccccccCCCCCeE-------------EEEECC-CCCCCEEEEEeCCCcEEEEEeecCCCcce
Confidence 999999999887 6777777877663 799999 9 99999999 9999999998764332
Q ss_pred -cccccccCeeeEEECC-------------CCCeEEEEeecCCCCCCCeEEEEEecCCc--cceeeeeeeeecceeEEEC
Q 005140 355 -KKSLKVENVMDFSWSP-------------TDPIISLFVPELGGGNQPARVSLVQIPSK--EELRQKNLFSVSDCKMYWQ 418 (712)
Q Consensus 355 -~~~~~~~~v~~~~~sp-------------~~~~la~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~s 418 (712)
....+...|.+++|+| ++..|++ ++.++.+++|....... ........+......+.|+
T Consensus 139 ~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~s-----gs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~s 213 (753)
T 3jro_A 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVT-----GGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS 213 (753)
T ss_dssp EEEECCSSCEEEEEECCCC---------CGGGCCEEE-----EETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC
T ss_pred eEeecCCCceEEEEecCcccccccccccCCCCCEEEE-----EECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEec
Confidence 2234667799999999 5888988 77888888777765432 2233334455667788999
Q ss_pred cC---CCEEEEEEcccccccccccccEEEEEEecCCcce--eEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEE
Q 005140 419 SS---GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPI--EVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFY 493 (712)
Q Consensus 419 ~~---g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~ 493 (712)
|+ |.+|++++.++. +.+|++.....+. .......|...|.+++|+|+|++|++++.|+ .|++|
T Consensus 214 p~~~~~~~l~s~s~Dg~---------I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg---~I~vw 281 (753)
T 3jro_A 214 PTVLLRSYLASVSQDRT---------CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN---KVTLW 281 (753)
T ss_dssp CCCSSSEEEEEEESSSC---------EEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSS---CEECC
T ss_pred cCCCCCCEEEEEecCCE---------EEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCC---EEEEE
Confidence 99 899999999877 8999998653221 1122345788999999999999999999999 99999
Q ss_pred Eeecc
Q 005140 494 SMRTA 498 (712)
Q Consensus 494 d~~~~ 498 (712)
++..+
T Consensus 282 d~~~~ 286 (753)
T 3jro_A 282 KENLE 286 (753)
T ss_dssp BCCSS
T ss_pred ecCCC
Confidence 99753
No 121
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=3.8e-23 Score=219.54 Aligned_cols=308 Identities=13% Similarity=0.093 Sum_probs=208.8
Q ss_pred ccchhhccCCCCCceEEEEE----CCe----eEEEecC--CCCCCCc--ccccCCCcccceEEEcC--------------
Q 005140 170 ENLQKWLTDEKARDQFVIRS----GTD----TEVLWND--ARHLKPE--PVYKRSYWTESFVQWSP-------------- 223 (712)
Q Consensus 170 ~~l~~~~~~~~~~~~~~~~~----~~~----~~~~w~~--~~~~~~~--~~~~~~~~~v~~v~~Sp-------------- 223 (712)
-++..|-. .+.+.++.+. .++ .+.+|+. .. ++.+ ..+.+|...+..+++++
T Consensus 65 ~~~~~w~~--~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 65 VQPAAWSA--LGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAP-GTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp CCHHHHHT--TTCCEEEEEEEEECTTSCEEEEEEEEECSSST-TCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cCHHHHHh--cCCCEEEEEEEEECCCCeEEEEEEEEeCCCCC-CCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 34556644 3555554433 455 6789998 43 3333 45788888888888876
Q ss_pred CCcEEEEEecC------c-eEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc
Q 005140 224 LGTYLATVHRQ------G-AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK 296 (712)
Q Consensus 224 dg~~lat~~~~------~-i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~ 296 (712)
.+..||+++.+ + |.+||..+.......-+...+.+++|||||++|++++.+. ....|++||+.+++
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~-------~~~~i~~~d~~tg~ 214 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES-------GRSALVIQTLANGA 214 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTT-------SSCEEEEEETTTCC
T ss_pred CCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecC-------CCcEEEEEECCCCc
Confidence 26677777653 4 8899998332222222334599999999999999999771 11489999999988
Q ss_pred eeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEE-Eec-C--CeEEEEEcCCceecccccccccCeeeEEECCCC
Q 005140 297 VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA-KLG-K--NMISVYETESFTLIDKKSLKVENVMDFSWSPTD 372 (712)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la-~~~-d--~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~ 372 (712)
... +..+...+. +++||| ||++|+ +++ + ..|.+||+.++... ....+...+.+++|+|+|
T Consensus 215 ~~~-l~~~~~~~~-------------~~~~sp-dg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~spdg 278 (415)
T 2hqs_A 215 VRQ-VASFPRHNG-------------APAFSP-DGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDS 278 (415)
T ss_dssp EEE-EECCSSCEE-------------EEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTS
T ss_pred EEE-eecCCCccc-------------CEEEcC-CCCEEEEEEecCCCceEEEEECCCCCEE-eCcCCCCcccceEECCCC
Confidence 754 444443332 689999 999888 444 4 45999999877653 233444568899999999
Q ss_pred CeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCc
Q 005140 373 PIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDI 452 (712)
Q Consensus 373 ~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 452 (712)
+.|++.. ..++...||+|+....+.
T Consensus 279 ~~l~~~s----~~~g~~~i~~~d~~~~~~--------------------------------------------------- 303 (415)
T 2hqs_A 279 QNLAFTS----DQAGRPQVYKVNINGGAP--------------------------------------------------- 303 (415)
T ss_dssp SEEEEEE----CTTSSCEEEEEETTSSCC---------------------------------------------------
T ss_pred CEEEEEE----CCCCCcEEEEEECCCCCE---------------------------------------------------
Confidence 9888731 124455666666543210
Q ss_pred ceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEe
Q 005140 453 PIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAG 531 (712)
Q Consensus 453 ~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~ 531 (712)
..+..|...+.+++|+|+|++|++++.+.....|.+|++.++. . ..+. ...+.+++|+|+|++|++++
T Consensus 304 ----~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~------~-~~l~~~~~~~~~~~spdg~~l~~~s 372 (415)
T 2hqs_A 304 ----QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG------V-QVLSSTFLDETPSLAPNGTMVIYSS 372 (415)
T ss_dssp ----EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC------E-EECCCSSSCEEEEECTTSSEEEEEE
T ss_pred ----EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC------E-EEecCCCCcCCeEEcCCCCEEEEEE
Confidence 1122335567789999999999998876333389999997654 2 2233 23688999999999999988
Q ss_pred ccCCCceEEEEECCcceeee-eccccceeeEEECCCCCE
Q 005140 532 LKGFNGQLEFYNVDELETMA-TAEHFMATDVEWDPTGRY 569 (712)
Q Consensus 532 ~~~~dg~v~iwd~~~~~~~~-~~~~~~v~~~~~spdg~~ 569 (712)
.......|++||+.+..... ..+.+.|.+++|+|.-++
T Consensus 373 ~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~~~~ 411 (415)
T 2hqs_A 373 SQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYLHH 411 (415)
T ss_dssp EETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCCCCC
T ss_pred cCCCccEEEEEECCCCcEEEeeCCCCCCcCCcccccccc
Confidence 62111289999998655443 356689999999997543
No 122
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.92 E-value=5.6e-23 Score=220.25 Aligned_cols=290 Identities=13% Similarity=0.110 Sum_probs=210.6
Q ss_pred cccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee------cCC-CeeEEEecCCCCEEEEEcCCCCCCC
Q 005140 208 VYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY------AHP-QVKLIDFSPGEKYLVTYSSHEPSNP 279 (712)
Q Consensus 208 ~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~------~~~-~v~~i~~Spdg~~l~t~s~d~~~~~ 279 (712)
.+..+ ..+.+++|+|++.++++++.++ |.+||.. +++.+... .|. .|.+++|+|+|+++++++.+
T Consensus 118 ~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~-~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d----- 190 (433)
T 3bws_A 118 RFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDIN-SGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA----- 190 (433)
T ss_dssp EEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETT-TCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG-----
T ss_pred EEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECC-CCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC-----
Confidence 34444 3456899999888888887777 8999998 66665522 233 49999999999999999999
Q ss_pred cCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEE-Eec-CCeEEEEEcCCceeccccc
Q 005140 280 RDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA-KLG-KNMISVYETESFTLIDKKS 357 (712)
Q Consensus 280 ~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la-~~~-d~~i~iwd~~~~~~~~~~~ 357 (712)
+.|++||+.+++.+..+..+...+. +++|+| ++++++ ++. ++.|.+||+.+++.+....
T Consensus 191 -----~~v~~~d~~~~~~~~~~~~~~~~~~-------------~~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~ 251 (433)
T 3bws_A 191 -----NAVHVFDLKTLAYKATVDLTGKWSK-------------ILLYDP-IRDLVYCSNWISEDISVIDRKTKLEIRKTD 251 (433)
T ss_dssp -----TEEEEEETTTCCEEEEEECSSSSEE-------------EEEEET-TTTEEEEEETTTTEEEEEETTTTEEEEECC
T ss_pred -----CEEEEEECCCceEEEEEcCCCCCee-------------EEEEcC-CCCEEEEEecCCCcEEEEECCCCcEEEEec
Confidence 9999999999999988887665442 689999 999875 444 8999999999887765443
Q ss_pred ccccCeeeEEECCCCCeEEEEeecCCCC-CCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEE-Eccccccc
Q 005140 358 LKVENVMDFSWSPTDPIISLFVPELGGG-NQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVK-VDRYTKTK 435 (712)
Q Consensus 358 ~~~~~v~~~~~sp~~~~la~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~-~~~~~~~~ 435 (712)
. ...+.+++|+|+++.|++.....+.. .....|.+|++.+.+.+.... +......+.|+|+|+++++. ..++.
T Consensus 252 ~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~--- 326 (433)
T 3bws_A 252 K-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSK--- 326 (433)
T ss_dssp C-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTE---
T ss_pred C-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCE---
Confidence 3 33489999999999988732211000 034678888887766544432 23355567899999877665 44443
Q ss_pred ccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCC------------CeEEEEEeecccccCc
Q 005140 436 KSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPR------------PDISFYSMRTAQHAGR 503 (712)
Q Consensus 436 ~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~------------~~v~i~d~~~~~~~~~ 503 (712)
+.+|++... .... .+ .+...+.+++|+|+|+++++++.+... ..|++||+.++.
T Consensus 327 ------v~v~d~~~~-~~~~--~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~---- 392 (433)
T 3bws_A 327 ------IEVYDLKEK-KVQK--SI-PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT---- 392 (433)
T ss_dssp ------EEEEETTTT-EEEE--EE-ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE----
T ss_pred ------EEEEECCCC-cEEE--Ee-cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc----
Confidence 678876532 2222 22 357889999999999999988874211 189999997654
Q ss_pred eeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCc
Q 005140 504 VSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE 546 (712)
Q Consensus 504 ~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~ 546 (712)
.+..+. ...+.+++|+|+|++|++++. .++.|++|++++
T Consensus 393 --~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~d~~i~v~~~~~ 432 (433)
T 3bws_A 393 --VKEFWEAGNQPTGLDVSPDNRYLVISDF--LDHQIRVYRRDG 432 (433)
T ss_dssp --EEEEEECSSSEEEEEECTTSCEEEEEET--TTTEEEEEEETT
T ss_pred --EEEEecCCCCCceEEEcCCCCEEEEEEC--CCCeEEEEEecC
Confidence 344443 346899999999999988763 189999999863
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=9.9e-24 Score=218.55 Aligned_cols=273 Identities=12% Similarity=0.037 Sum_probs=194.2
Q ss_pred ceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc--
Q 005140 217 SFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR-- 293 (712)
Q Consensus 217 ~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~-- 293 (712)
....+.+++.+||+|+.|+ |++||.. +++.+..+....|.++.|+|+ +++++.| ++|++|+..
T Consensus 40 ~~~~~~~d~~~l~sg~~Dg~v~iwd~~-~~~~~~~~~~~~v~~~~~~~~---~~s~s~D----------~~i~~w~~~~~ 105 (343)
T 3lrv_A 40 LNKSMYYDKWVCMCRCEDGALHFTQLK-DSKTITTITTPNPRTGGEHPA---IISRGPC----------NRLLLLYPGNQ 105 (343)
T ss_dssp ECSSSSEEEEEEEEEEETTEEEEEEES-SSSCEEEEEEECCCTTCCCCS---EEEECST----------TEEEEEETTTE
T ss_pred hhhhhcCCCCEEEEECCCCcEEEEECC-CCcEEEEEecCCceeeeeCCc---eEEecCC----------CeEEEEEccCc
Confidence 3445668999999999999 8899999 788777777667899999998 9999999 999999754
Q ss_pred -------CCceeeecc-CCCcccccCCCCCcCCCCcCeEEecCC-CCCEEEEec-CCeEEEEEcCCceecccccc-cccC
Q 005140 294 -------TGKVMRDFK-GSADEFAVGGTGGVAGVSWPVFRWGGG-KDKYFAKLG-KNMISVYETESFTLIDKKSL-KVEN 362 (712)
Q Consensus 294 -------~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~-dg~~la~~~-d~~i~iwd~~~~~~~~~~~~-~~~~ 362 (712)
+++.++.+. .|...+. +++|+|. ++++|++++ |++|++||+.+++.+..... +...
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~v~-------------~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~ 172 (343)
T 3lrv_A 106 ITILDSKTNKVLREIEVDSANEII-------------YMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVE 172 (343)
T ss_dssp EEEEETTTCCEEEEEECCCSSCEE-------------EEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCC
T ss_pred eEEeecCCcceeEEeecCCCCCEE-------------EEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCc
Confidence 444444444 3333332 6888873 567899888 99999999998876543322 3335
Q ss_pred eeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccE
Q 005140 363 VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGF 442 (712)
Q Consensus 363 v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~ 442 (712)
+.+++|+|++.+|++ |+.++.+++|. +.+.+
T Consensus 173 i~~~~~~pdg~~las-----g~~dg~i~iwd--~~~~~------------------------------------------ 203 (343)
T 3lrv_A 173 YSSGVLHKDSLLLAL-----YSPDGILDVYN--LSSPD------------------------------------------ 203 (343)
T ss_dssp CCEEEECTTSCEEEE-----ECTTSCEEEEE--SSCTT------------------------------------------
T ss_pred eEEEEECCCCCEEEE-----EcCCCEEEEEE--CCCCC------------------------------------------
Confidence 888999999988888 66666655543 22111
Q ss_pred EEEEEecCCcceeEEEecC-CCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC--Cce--eE
Q 005140 443 ELFRIKERDIPIEVLELDN-KNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG--KQA--NA 517 (712)
Q Consensus 443 ~l~~l~~~~~~~~~~~l~~-h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~v--~~ 517 (712)
.. ...+.. |.++|.+++|+|+|.+|++++ ++ .|++||+++...... +..+.. ..+ .+
T Consensus 204 ---------~~--~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~---~v~iwd~~~~~~~~~---~~~~~~~~~~~~~~~ 265 (343)
T 3lrv_A 204 ---------QA--SSRFPVDEEAKIKEVKFADNGYWMVVEC-DQ---TVVCFDLRKDVGTLA---YPTYTIPEFKTGTVT 265 (343)
T ss_dssp ---------SC--CEECCCCTTSCEEEEEECTTSSEEEEEE-SS---BEEEEETTSSTTCBS---SCCCBC-----CCEE
T ss_pred ---------CC--ccEEeccCCCCEEEEEEeCCCCEEEEEe-CC---eEEEEEcCCCCccee---ecccccccccccceE
Confidence 00 012334 889999999999999999999 55 799999987543211 111111 223 36
Q ss_pred EEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECC---CCCEEEEEEccceeccccEEEEEecCc
Q 005140 518 LFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDP---TGRYVATAVTSVHEMENGFNIWSFNGK 592 (712)
Q Consensus 518 l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~sp---dg~~l~t~s~~~~~~d~~v~iw~~~g~ 592 (712)
++|+|+|++|++++.+ ++.+++|++......... ..+..++|+| +++.|++++. |+.+.++-..+.
T Consensus 266 ~~~~~~g~~l~~~s~~--d~~i~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~-----d~~~~~~~~~~~ 334 (343)
T 3lrv_A 266 YDIDDSGKNMIAYSNE--SNSLTIYKFDKKTKNWTK--DEESALCLQSDTADFTDMDVVCG-----DGGIAAILKTND 334 (343)
T ss_dssp EEECTTSSEEEEEETT--TTEEEEEEECTTTCSEEE--EEEEECCC----CCCCEEEEEEE-----TTEEEEEEECSS
T ss_pred EEECCCCCEEEEecCC--CCcEEEEEEcccccceEe--cCceeEecCccccccceeEEEec-----CCceEEEEecCC
Confidence 9999999999997631 688999999754332221 5677899999 9999999999 899998876654
No 124
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.92 E-value=9.6e-24 Score=241.95 Aligned_cols=332 Identities=11% Similarity=0.147 Sum_probs=206.3
Q ss_pred ccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-CC----CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEE
Q 005140 215 TESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP----QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVIN 288 (712)
Q Consensus 215 ~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~----~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~ 288 (712)
...+++|||||+++++ +.++ +++||.. +++....+. +. .|.+++|||||++|++++.+... ......+.|+
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~-~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~-~~~~~~~~i~ 94 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVE-TNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPI-YQHSYTGYYV 94 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGG-GCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCC-SSSCCCSEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECC-CCcEEEEeccccccccccceEEECCCCCEEEEEecCccc-eeecceeeEE
Confidence 3567999999998877 5666 8899998 665554443 33 38999999999999999765211 1111226899
Q ss_pred EEEccCCceeeeccCCC---cccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceeccccccccc----
Q 005140 289 IFDVRTGKVMRDFKGSA---DEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVE---- 361 (712)
Q Consensus 289 iwd~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~~---- 361 (712)
+||+.+++. +.+.... ..+. .++||| ||++||+++++.|.+|++.++........+..
T Consensus 95 ~~d~~~~~~-~~l~~~~~~~~~~~-------------~~~~SP-dG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~ 159 (723)
T 1xfd_A 95 LSKIPHGDP-QSLDPPEVSNAKLQ-------------YAGWGP-KGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIY 159 (723)
T ss_dssp EEESSSCCC-EECCCTTCCSCCCS-------------BCCBCS-STTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEE
T ss_pred EEECCCCce-EeccCCcccccccc-------------ccEECC-CCCEEEEEECCeEEEEECCCCceEEEecCCCCCceE
Confidence 999988875 3333221 1121 579999 99999999999999999988765432222222
Q ss_pred --------------CeeeEEECCCCCeEEEEeecC---------------------------CCCCCCeEEEEEecCCcc
Q 005140 362 --------------NVMDFSWSPTDPIISLFVPEL---------------------------GGGNQPARVSLVQIPSKE 400 (712)
Q Consensus 362 --------------~v~~~~~sp~~~~la~~~~~~---------------------------~~~~~~~~i~~~~~~~~~ 400 (712)
.+.+++|||||+.|++..... +..+....|++|++.+.+
T Consensus 160 ~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~ 239 (723)
T 1xfd_A 160 NGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT 239 (723)
T ss_dssp EEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC
T ss_pred CcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc
Confidence 237899999999999854321 001123478888887765
Q ss_pred ceeeeeee------eecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCce----EEEE
Q 005140 401 ELRQKNLF------SVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKI----IAFA 470 (712)
Q Consensus 401 ~~~~~~~~------~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v----~~~~ 470 (712)
........ ......+.|+|||++|++...+.. ....+.+|++... ....+....+...+ .+++
T Consensus 240 ~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~-----~~~~i~~~d~~~g--~~~~~~~~~~~~~~~~~~~~~~ 312 (723)
T 1xfd_A 240 HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQ-----NVSILTLCDATTG--VCTKKHEDESEAWLHRQNEEPV 312 (723)
T ss_dssp CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTS-----CEEEEEEEETTTC--CEEEEEEEECSSCCCCCCCCCE
T ss_pred eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCC-----CeEEEEEEeCCCC--cceEEEEeccCCEEeccCCCce
Confidence 32222211 233456789999998877665421 0122455554332 22222111233433 3789
Q ss_pred EeeCCCEEEEE-EcCCC----CCeEEEEE-eecccccCceeEEEEeCC--Ccee-EEEEccCCCeEEEEeccCCCceEEE
Q 005140 471 WEPKGHRFAVI-HGDSP----RPDISFYS-MRTAQHAGRVSKLTTLKG--KQAN-ALFWSPSGRFIVLAGLKGFNGQLEF 541 (712)
Q Consensus 471 ~sp~g~~l~~~-~~d~~----~~~v~i~d-~~~~~~~~~~~~~~~~~~--~~v~-~l~~spdg~~l~~~~~~~~dg~v~i 541 (712)
|||||+.|++. +.... ...|.+|+ ..++... ....+.. ..+. .++|||||++|++.+.....+.+.+
T Consensus 313 ~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~----~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 388 (723)
T 1xfd_A 313 FSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND----NIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQL 388 (723)
T ss_dssp ECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC----CCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEE
T ss_pred EcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcc----ceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEE
Confidence 99999988876 43221 12466676 3322200 0122221 2343 4799999999987765211178889
Q ss_pred EECCcc---eeee-ec---cccceeeEEECCCCCEEEEEEc
Q 005140 542 YNVDEL---ETMA-TA---EHFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 542 wd~~~~---~~~~-~~---~~~~v~~~~~spdg~~l~t~s~ 575 (712)
|+++.. .... +. +...+..++|||||++|+....
T Consensus 389 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 389 YSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp EEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred EEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence 987632 1211 11 4566889999999999887654
No 125
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.92 E-value=5.9e-22 Score=216.94 Aligned_cols=334 Identities=15% Similarity=0.184 Sum_probs=233.5
Q ss_pred EEcCCCcEEEEEecCc-eEEeecccCcceeeeec-CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEc--cCC
Q 005140 220 QWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDV--RTG 295 (712)
Q Consensus 220 ~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~--~~g 295 (712)
+|+|+|.++++.+.++ |.+||.. +++.+.++. ...+.+++|||||++|++++.+ +.|.+||+ .++
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~-t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d----------~~V~v~D~~~~t~ 212 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGD-SKKIVKVIDTGYAVHISRMSASGRYLLVIGRD----------ARIDMIDLWAKEP 212 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETT-TCCEEEEEECSTTEEEEEECTTSCEEEEEETT----------SEEEEEETTSSSC
T ss_pred ccCCCCEEEEEEcCCCeEEEEECC-CceEEEEEecCcccceEEECCCCCEEEEECCC----------CeEEEEECcCCCC
Confidence 4899999999998888 8899999 888887776 3348999999999999999999 89999999 889
Q ss_pred ceeeeccCCCcccccCCCCCcCCCCcCeEEecC--C-CCCEEEEec--CCeEEEEEcCCceeccccccc----------c
Q 005140 296 KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGG--G-KDKYFAKLG--KNMISVYETESFTLIDKKSLK----------V 360 (712)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~-dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~----------~ 360 (712)
+.+..+..+.... .++||| + ||+++++++ +++|.+||..+++++.....+ .
T Consensus 213 ~~~~~i~~g~~p~--------------~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~ 278 (543)
T 1nir_A 213 TKVAEIKIGIEAR--------------SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHP 278 (543)
T ss_dssp EEEEEEECCSEEE--------------EEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEES
T ss_pred cEEEEEecCCCcc--------------eEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCcccccc
Confidence 8888887654443 688986 1 578888777 899999999988876554331 1
Q ss_pred c-CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeee-eeecceeEEECcCCCEEEEEEc-cccccccc
Q 005140 361 E-NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL-FSVSDCKMYWQSSGDYLAVKVD-RYTKTKKS 437 (712)
Q Consensus 361 ~-~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~g~~l~~~~~-~~~~~~~~ 437 (712)
. .+..+.++|++..+++. ......|++++....+.+....+ .......+.|+|+|++++++.. +++
T Consensus 279 ~~~v~~i~~s~~~~~~~vs------~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~----- 347 (543)
T 1nir_A 279 EPRVAAIIASHEHPEFIVN------VKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNK----- 347 (543)
T ss_dssp CCCEEEEEECSSSSEEEEE------ETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTE-----
T ss_pred CCceEEEEECCCCCEEEEE------ECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCe-----
Confidence 2 58899999988876652 23345788888776554332111 1223345789999999887665 333
Q ss_pred ccccEEEEEEecCCcceeEEEe--cCCCCceEEEEEeeC-CCEEEEEE-cCCCCCeEEEEEeecccc-cCceeEEEEeCC
Q 005140 438 TYTGFELFRIKERDIPIEVLEL--DNKNDKIIAFAWEPK-GHRFAVIH-GDSPRPDISFYSMRTAQH-AGRVSKLTTLKG 512 (712)
Q Consensus 438 ~~~~~~l~~l~~~~~~~~~~~l--~~h~~~v~~~~~sp~-g~~l~~~~-~d~~~~~v~i~d~~~~~~-~~~~~~~~~~~~ 512 (712)
+.+|++.... ....+.. ..|.+....+ ++|+ |..+++++ +++ +|.+|++.+... ...++.+.++..
T Consensus 348 ----v~v~D~~tg~-l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~---~V~v~d~~~~~~~~~~~~~v~~l~~ 418 (543)
T 1nir_A 348 ----VAVIDSKDRR-LSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDG---SISLIGTDPKNHPQYAWKKVAELQG 418 (543)
T ss_dssp ----EEEEETTTTE-EEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSS---EEEEEECCTTTCTTTBTSEEEEEEC
T ss_pred ----EEEEECCCCe-EEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCc---eEEEEEeCCCCCchhcCeEEEEEEc
Confidence 6677665432 2222222 1255444444 4777 55555544 456 999999976221 111346666664
Q ss_pred C--ceeEEEEccCCCeEEEEeccC----CCceEEEEECCcceee-ee----------ccccceeeEEECCCCCEEEEEEc
Q 005140 513 K--QANALFWSPSGRFIVLAGLKG----FNGQLEFYNVDELETM-AT----------AEHFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 513 ~--~v~~l~~spdg~~l~~~~~~~----~dg~v~iwd~~~~~~~-~~----------~~~~~v~~~~~spdg~~l~t~s~ 575 (712)
+ .+..+++||+|++|++++..+ .+++|.+||+.+++.. .. .+...+..+.|+|+|++|+++..
T Consensus 419 ~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~ 498 (543)
T 1nir_A 419 QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVW 498 (543)
T ss_dssp SCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEE
T ss_pred CCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEee
Confidence 4 567899999999999987211 1679999999987765 22 23467889999999999997753
Q ss_pred cceeccccEEEEEec-Cceeeeec
Q 005140 576 SVHEMENGFNIWSFN-GKLLYRTL 598 (712)
Q Consensus 576 ~~~~~d~~v~iw~~~-g~~~~~~~ 598 (712)
.....++.|.|||.. ++++....
T Consensus 499 ~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 499 NGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp CCTTSCCEEEEEETTTTEEEEEEC
T ss_pred cCCCCCCeEEEEECCCceEEEeec
Confidence 111127999999987 44444443
No 126
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=2.1e-22 Score=231.45 Aligned_cols=341 Identities=11% Similarity=0.039 Sum_probs=225.1
Q ss_pred chhhccCCCCCceEEEEECCe-----eEEEecCCCCCCCcccccCCC------------------------cccceEEEc
Q 005140 172 LQKWLTDEKARDQFVIRSGTD-----TEVLWNDARHLKPEPVYKRSY------------------------WTESFVQWS 222 (712)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~-----~~~~w~~~~~~~~~~~~~~~~------------------------~~v~~v~~S 222 (712)
+.....+|+|+-.+.+...++ .+.+|+. ..++....+..+. ..+.+++||
T Consensus 39 ~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S 117 (741)
T 2ecf_A 39 LMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDI-GSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS 117 (741)
T ss_dssp CEEEEECTTSSEEEEEECCSSCTTEEEEEEEET-TTCCEEEEECGGGTC--------------------CCEESCCCEEC
T ss_pred CCCceEecCCCEEEEEeccCCCCcccEEEEEEC-CCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC
Confidence 344556788875544444255 7789998 3444433333332 348899999
Q ss_pred CCCcEEEEEecCceEEeecccCc---ceeeeecC-CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcee
Q 005140 223 PLGTYLATVHRQGAAVWGGANTF---NRLMRYAH-PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVM 298 (712)
Q Consensus 223 pdg~~lat~~~~~i~iw~~~~~~---~~~~~~~~-~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~ 298 (712)
|||++|++++...|.+|+.. +. .......+ ..+.+++|||||++|++++.+ .|++||+.+++..
T Consensus 118 pDg~~l~~~~~~~i~~~d~~-~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~-----------~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 118 PDAQRLLFPLGGELYLYDLK-QEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGR-----------NLWVIDLASGRQM 185 (741)
T ss_dssp TTSSEEEEEETTEEEEEESS-SCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETT-----------EEEEEETTTTEEE
T ss_pred CCCCEEEEEeCCcEEEEECC-CCCcceEEEcccCCcccccccCCCCCCEEEEEeCC-----------cEEEEecCCCCEE
Confidence 99999999998669999998 55 33322233 359999999999999998744 7999999888766
Q ss_pred eeccCCCcccccCCCCCc----CCCCcCeEEecCCCCCEEEEec-CC---------------------------------
Q 005140 299 RDFKGSADEFAVGGTGGV----AGVSWPVFRWGGGKDKYFAKLG-KN--------------------------------- 340 (712)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~dg~~la~~~-d~--------------------------------- 340 (712)
+....+...+..+....+ .+. ...+.||| ||++|++++ ++
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~-~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~ 263 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDR-HTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQV 263 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCC-CCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEE
T ss_pred EeccCCccceeccccceeeeecccc-ccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCee
Confidence 555443321100000000 000 01589999 999999886 54
Q ss_pred eEEEEEcCC-ceeccccc--ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeee----cce
Q 005140 341 MISVYETES-FTLIDKKS--LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV----SDC 413 (712)
Q Consensus 341 ~i~iwd~~~-~~~~~~~~--~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~ 413 (712)
.|.+||+.+ ++...... .+...+..++| |||+.|++..... ......|++|+..+.+.......... ...
T Consensus 264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~--~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 340 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSR--DQKKLDLVEVTLASNQQRVLAHETSPTWVPLHN 340 (741)
T ss_dssp EEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEET--TSSEEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred EEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecc--cCCeEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence 788899887 66432211 13345889999 9999999854433 44567899999887664433222221 223
Q ss_pred eEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEE-EEeeCCCEEEEEEcCCCCCeEEE
Q 005140 414 KMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAF-AWEPKGHRFAVIHGDSPRPDISF 492 (712)
Q Consensus 414 ~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~-~~sp~g~~l~~~~~d~~~~~v~i 492 (712)
.+.|+|+|++++++..++. ..||.++..+. ...+..|...+.++ +|+|+|+.|++.+.+.....++|
T Consensus 341 ~~~~spdg~~~~~~~~~g~---------~~l~~~~~~~~---~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l 408 (741)
T 2ecf_A 341 SLRFLDDGSILWSSERTGF---------QHLYRIDSKGK---AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQI 408 (741)
T ss_dssp CCEECTTSCEEEEECTTSS---------CEEEEECSSSC---EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEE
T ss_pred ceEECCCCeEEEEecCCCc---------cEEEEEcCCCC---eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEE
Confidence 5789999997766655543 57888875443 35566778888887 59999999887776543336889
Q ss_pred EEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccC-CCceEEEEECCcc
Q 005140 493 YSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKG-FNGQLEFYNVDEL 547 (712)
Q Consensus 493 ~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~-~dg~v~iwd~~~~ 547 (712)
|++..... ....+. ...+..++|||||++|++...+. ..+.+++++..+.
T Consensus 409 ~~~~~~g~-----~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 409 YAVPLQGG-----QPQRLSKAPGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp EEEETTCC-----CCEECCCSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred EEEEcCCC-----CeeecccCCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 99864221 122333 33578999999999998875421 2367899998644
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.92 E-value=5.8e-23 Score=224.94 Aligned_cols=357 Identities=11% Similarity=0.061 Sum_probs=236.7
Q ss_pred ccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeec--ccCcceeeeec
Q 005140 176 LTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGG--ANTFNRLMRYA 252 (712)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~--~~~~~~~~~~~ 252 (712)
..+|++ ..|+..+.++++.+|+. ..++....+..+.. +.+++|||||++|++++.++ |.+||+ . +.+.+.++.
T Consensus 144 ~~~p~~-~~~vs~~~d~~V~v~D~-~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~-t~~~~~~i~ 219 (543)
T 1nir_A 144 DLDLPN-LFSVTLRDAGQIALVDG-DSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAK-EPTKVAEIK 219 (543)
T ss_dssp CCCGGG-EEEEEEGGGTEEEEEET-TTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSS-SCEEEEEEE
T ss_pred ccCCCC-EEEEEEcCCCeEEEEEC-CCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCC-CCcEEEEEe
Confidence 355654 36677777888999998 56666666663333 78999999999999999888 889999 6 777777776
Q ss_pred CC-CeeEEEecC----CCCEEEEEcC-CCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEe
Q 005140 253 HP-QVKLIDFSP----GEKYLVTYSS-HEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRW 326 (712)
Q Consensus 253 ~~-~v~~i~~Sp----dg~~l~t~s~-d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (712)
+. .+..++||| ||++|++++. + ++|.|||..++++++.+..+..... +........ -..+.+
T Consensus 220 ~g~~p~~va~sp~~~~dg~~l~v~~~~~----------~~v~v~D~~t~~~~~~i~~~g~~~~-~~~~~~~~~-v~~i~~ 287 (543)
T 1nir_A 220 IGIEARSVESSKFKGYEDRYTIAGAYWP----------PQFAIMDGETLEPKQIVSTRGMTVD-TQTYHPEPR-VAAIIA 287 (543)
T ss_dssp CCSEEEEEEECCSTTCTTTEEEEEEEES----------SEEEEEETTTCCEEEEEECCEECSS-SCCEESCCC-EEEEEE
T ss_pred cCCCcceEEeCCCcCCCCCEEEEEEccC----------CeEEEEeccccccceeecccCcccC-ccccccCCc-eEEEEE
Confidence 54 499999999 9999999885 5 7899999999999888865321100 000000000 015889
Q ss_pred cCCCCCEEEEe-c-CCeEEEEEcCCceecccccc-cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcccee
Q 005140 327 GGGKDKYFAKL-G-KNMISVYETESFTLIDKKSL-KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELR 403 (712)
Q Consensus 327 s~~dg~~la~~-~-d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~ 403 (712)
|| ++..++.. . ++.|.+||+.+.+.+....+ +...+.++.|+|+|+++++. ......|.+|+..+.+.+.
T Consensus 288 s~-~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va------~~~~~~v~v~D~~tg~l~~ 360 (543)
T 1nir_A 288 SH-EHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTA------ANNSNKVAVIDSKDRRLSA 360 (543)
T ss_dssp CS-SSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEE------EGGGTEEEEEETTTTEEEE
T ss_pred CC-CCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEE------ecCCCeEEEEECCCCeEEE
Confidence 99 88765544 4 89999999987654431112 23347889999999987652 2223356668888776555
Q ss_pred eeeee----eecceeEEECcCCCEEEEEE--cccccccccccccEEEEEEecCCc----ceeEEEecCCCCceEEEEEee
Q 005140 404 QKNLF----SVSDCKMYWQSSGDYLAVKV--DRYTKTKKSTYTGFELFRIKERDI----PIEVLELDNKNDKIIAFAWEP 473 (712)
Q Consensus 404 ~~~~~----~~~~~~~~~s~~g~~l~~~~--~~~~~~~~~~~~~~~l~~l~~~~~----~~~~~~l~~h~~~v~~~~~sp 473 (712)
..... ......+ ++|++..+++.. .+++ +.+|++...+. -....++..|.+.+..++++|
T Consensus 361 ~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~---------V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~p 430 (543)
T 1nir_A 361 LVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGS---------ISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP 430 (543)
T ss_dssp EEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSE---------EEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT
T ss_pred eeccCCCCCCCCCccc-CCCCCccEEEeccCCCce---------EEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCC
Confidence 44321 1112222 467744444433 3344 78888875221 123345667778888999999
Q ss_pred CCCEEEEEEcCCC----CCeEEEEEeecccccCceeEEE-----EeCCCceeEEEEccCCCeEEEEecc--CCCceEEEE
Q 005140 474 KGHRFAVIHGDSP----RPDISFYSMRTAQHAGRVSKLT-----TLKGKQANALFWSPSGRFIVLAGLK--GFNGQLEFY 542 (712)
Q Consensus 474 ~g~~l~~~~~d~~----~~~v~i~d~~~~~~~~~~~~~~-----~~~~~~v~~l~~spdg~~l~~~~~~--~~dg~v~iw 542 (712)
+|++|++.+.-++ ..+|.+||+.+........++. .-.+..+..+.|+|+|+.|+++... +.++.|.||
T Consensus 431 dg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~ 510 (543)
T 1nir_A 431 KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVV 510 (543)
T ss_dssp TCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEE
T ss_pred CCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEE
Confidence 9999999872111 1289999998765310110010 0113468899999999999987431 237999999
Q ss_pred ECCcceeeeeccccceeeEEECCCCCE
Q 005140 543 NVDELETMATAEHFMATDVEWDPTGRY 569 (712)
Q Consensus 543 d~~~~~~~~~~~~~~v~~~~~spdg~~ 569 (712)
|..+++++.+.....+ .+|+|+|
T Consensus 511 D~~t~~~~~~i~~~~~----~~p~g~~ 533 (543)
T 1nir_A 511 DDKTLKLKAVVKDPRL----ITPTGKF 533 (543)
T ss_dssp ETTTTEEEEEECCTTC----CSEEEEE
T ss_pred ECCCceEEEeecCCCc----cCCCeee
Confidence 9999999877654332 3355544
No 128
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.92 E-value=3.8e-23 Score=221.19 Aligned_cols=251 Identities=13% Similarity=0.258 Sum_probs=182.2
Q ss_pred cccCCCcccceEEEcCC-CcEEEEEecCc-eEEeecccC---------cceeeee-cCC-CeeEEEecCCCC-EEEEEcC
Q 005140 208 VYKRSYWTESFVQWSPL-GTYLATVHRQG-AAVWGGANT---------FNRLMRY-AHP-QVKLIDFSPGEK-YLVTYSS 273 (712)
Q Consensus 208 ~~~~~~~~v~~v~~Spd-g~~lat~~~~~-i~iw~~~~~---------~~~~~~~-~~~-~v~~i~~Spdg~-~l~t~s~ 273 (712)
....|...|++++|+|+ +.+||+++.+| |.||++... ...+..+ .|. .|.+++|+|++. +|++++.
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 202 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD 202 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence 34578899999999997 78999999998 889999721 4444444 344 499999999998 9999999
Q ss_pred CCCCCCcCCCccEEEEEEccCCce-------eeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEE
Q 005140 274 HEPSNPRDANRVVINIFDVRTGKV-------MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVY 345 (712)
Q Consensus 274 d~~~~~~~~~~~~I~iwd~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iw 345 (712)
+ +.|++|++.++.. ...+.+|...+. +++|+|.++.+|++++ ++.|++|
T Consensus 203 d----------g~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~-------------~v~~~p~~~~~l~s~~~dg~i~i~ 259 (430)
T 2xyi_A 203 D----------HTICLWDINATPKEHRVIDAKNIFTGHTAVVE-------------DVAWHLLHESLFGSVADDQKLMIW 259 (430)
T ss_dssp T----------SCEEEEETTSCCBGGGEEECSEEECCCSSCEE-------------EEEECSSCTTEEEEEETTSEEEEE
T ss_pred C----------CeEEEEeCCCCCCCCceeccceeecCCCCCEe-------------eeEEeCCCCCEEEEEeCCCeEEEE
Confidence 9 9999999987432 345556655542 7999993356777877 9999999
Q ss_pred EcCCc---eecccccccccCeeeEEECCCCCe-EEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCC
Q 005140 346 ETESF---TLIDKKSLKVENVMDFSWSPTDPI-ISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSG 421 (712)
Q Consensus 346 d~~~~---~~~~~~~~~~~~v~~~~~sp~~~~-la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g 421 (712)
|+.++ ..+.....|...|.+++|+|++.. |++ ++.++.+++ |++.
T Consensus 260 d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~t-----g~~dg~v~v--wd~~------------------------ 308 (430)
T 2xyi_A 260 DTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILAT-----GSADKTVAL--WDLR------------------------ 308 (430)
T ss_dssp ETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEE-----EETTSEEEE--EETT------------------------
T ss_pred ECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEE-----EeCCCeEEE--EeCC------------------------
Confidence 99876 333334456667888888888774 555 444444433 3322
Q ss_pred CEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCC-EEEEEEcCCCCCeEEEEEeecccc
Q 005140 422 DYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGH-RFAVIHGDSPRPDISFYSMRTAQH 500 (712)
Q Consensus 422 ~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~-~l~~~~~d~~~~~v~i~d~~~~~~ 500 (712)
....+. ..+.+|...|.+++|+|+++ .|++++.|+ .|++|++.....
T Consensus 309 ---------------------------~~~~~~--~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~---~i~iwd~~~~~~ 356 (430)
T 2xyi_A 309 ---------------------------NLKLKL--HSFESHKDEIFQVQWSPHNETILASSGTDR---RLHVWDLSKIGE 356 (430)
T ss_dssp ---------------------------CTTSCS--EEEECCSSCEEEEEECSSCTTEEEEEETTS---CCEEEEGGGTTC
T ss_pred ---------------------------CCCCCe--EEeecCCCCEEEEEECCCCCCEEEEEeCCC---cEEEEeCCCCcc
Confidence 111111 23446789999999999995 688888888 899999976221
Q ss_pred cC--------ceeEEEEeCCC--ceeEEEEccCCC-eEEEEeccCCCceEEEEECCcc
Q 005140 501 AG--------RVSKLTTLKGK--QANALFWSPSGR-FIVLAGLKGFNGQLEFYNVDEL 547 (712)
Q Consensus 501 ~~--------~~~~~~~~~~~--~v~~l~~spdg~-~l~~~~~~~~dg~v~iwd~~~~ 547 (712)
.. ....+..+.++ .+++++|+|+++ +|++++. ||.|+||++...
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~---dg~i~iw~~~~~ 411 (430)
T 2xyi_A 357 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSE---DNIMQVWQMAEN 411 (430)
T ss_dssp CCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEET---TSEEEEEEECHH
T ss_pred ccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEEC---CCCEEEeEcccc
Confidence 00 01255555544 699999999999 7888887 999999999843
No 129
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=3.5e-22 Score=228.23 Aligned_cols=333 Identities=11% Similarity=0.112 Sum_probs=212.3
Q ss_pred ccceEEEcCCCcEEEEEecCceEEeecccCcce--eeeecC------------------CCeeEEEecCCCCEEEEEcCC
Q 005140 215 TESFVQWSPLGTYLATVHRQGAAVWGGANTFNR--LMRYAH------------------PQVKLIDFSPGEKYLVTYSSH 274 (712)
Q Consensus 215 ~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~--~~~~~~------------------~~v~~i~~Spdg~~l~t~s~d 274 (712)
.+..++|+ |..+++++.++| +||.. +++. ...+.+ ..|.+++|||| ++++.+. +
T Consensus 27 ~~~~~~w~--g~~~~~~~~~~i-~~d~~-tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~ 100 (706)
T 2z3z_A 27 YVVGLQWM--GDNYVFIEGDDL-VFNKA-NGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-Q 100 (706)
T ss_dssp -CTTCEEE--TTEEEEEETTEE-EEEC--------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-T
T ss_pred cCCCCcCc--CCeEEEEeCCcE-EEECC-CCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-C
Confidence 35668999 667777778889 99998 5554 222221 45999999999 6666553 4
Q ss_pred CCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCC-----
Q 005140 275 EPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETES----- 349 (712)
Q Consensus 275 ~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~----- 349 (712)
+.|++||+.+++...... +...+. .++||| ||++|+++.++.|.+|++.+
T Consensus 101 ----------~~i~~~d~~~~~~~~l~~-~~~~~~-------------~~~~Sp-dG~~la~~~~~~i~v~~~~~~~~~~ 155 (706)
T 2z3z_A 101 ----------GGLVGFDMLARKVTYLFD-TNEETA-------------SLDFSP-VGDRVAYVRNHNLYIARGGKLGEGM 155 (706)
T ss_dssp ----------TEEEEEETTTTEEEEEEC-CTTCCT-------------TCEECT-TSSEEEEEETTEEEEEECBCTTSCC
T ss_pred ----------CEEEEEECCCCceEEccC-Cccccc-------------CCcCCC-CCCEEEEEECCeEEEEecCcccccC
Confidence 589999998887654433 322221 579999 99999998899999999988
Q ss_pred ceecccccccccC--------------eeeEEECCCCCeEEEEeecC--------------------------CCCCCCe
Q 005140 350 FTLIDKKSLKVEN--------------VMDFSWSPTDPIISLFVPEL--------------------------GGGNQPA 389 (712)
Q Consensus 350 ~~~~~~~~~~~~~--------------v~~~~~sp~~~~la~~~~~~--------------------------~~~~~~~ 389 (712)
++........... +.+++|||||++|++..... +..+...
T Consensus 156 g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~ 235 (706)
T 2z3z_A 156 SRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHV 235 (706)
T ss_dssp CCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEE
T ss_pred CCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCee
Confidence 6644322222222 48899999999999853110 0123557
Q ss_pred EEEEEecCCccceeeee--eeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCC---
Q 005140 390 RVSLVQIPSKEELRQKN--LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKND--- 464 (712)
Q Consensus 390 ~i~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~--- 464 (712)
.|++|++.+.+...... .+......+.|+|+|++|++...+... ....+.+|++.... ....+....+..
T Consensus 236 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~----~~~~v~~~d~~~g~-~~~~~~~~~~~~~~~ 310 (706)
T 2z3z_A 236 TVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQ----NECKVNAYDAETGR-FVRTLFVETDKHYVE 310 (706)
T ss_dssp EEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTS----CEEEEEEEETTTCC-EEEEEEEEECSSCCC
T ss_pred EEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCC----CeeEEEEEECCCCc-eeeEEEEccCCCeEC
Confidence 89999987765332221 122334567999999999987655321 01124455543321 222221112222
Q ss_pred ceEEEEEee--CCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeE-EEEccCCCeEEEEeccCC--Cc
Q 005140 465 KIIAFAWEP--KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANA-LFWSPSGRFIVLAGLKGF--NG 537 (712)
Q Consensus 465 ~v~~~~~sp--~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~-l~~spdg~~l~~~~~~~~--dg 537 (712)
.+.+++|+| +|++++++..++ .++||.++.... .+..+..+ .+.. ++|+|+|+.|++++.... ..
T Consensus 311 ~~~~~~~sp~~dg~~l~~~~~~g---~~~l~~~~~~~~-----~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~ 382 (706)
T 2z3z_A 311 PLHPLTFLPGSNNQFIWQSRRDG---WNHLYLYDTTGR-----LIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLER 382 (706)
T ss_dssp CCSCCEECTTCSSEEEEEECTTS---SCEEEEEETTSC-----EEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCB
T ss_pred ccCCceeecCCCCEEEEEEccCC---ccEEEEEECCCC-----EEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceE
Confidence 346789999 999888777777 678888762211 44555443 4555 899999999887765221 13
Q ss_pred eEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCc
Q 005140 538 QLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK 592 (712)
Q Consensus 538 ~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~ 592 (712)
.|+.||+.+++.....+...+.+++|||||++|+++..+. ...+.+++|++.+.
T Consensus 383 ~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~-~~p~~i~l~d~~~~ 436 (706)
T 2z3z_A 383 HFYCIDIKGGKTKDLTPESGMHRTQLSPDGSAIIDIFQSP-TVPRKVTVTNIGKG 436 (706)
T ss_dssp EEEEEETTCCCCEESCCSSSEEEEEECTTSSEEEEEEECS-SCSCEEEEEESSSC
T ss_pred EEEEEEcCCCCceeccCCCceEEEEECCCCCEEEEEecCC-CCCcEEEEEECCCC
Confidence 7778888776644444566788999999999998876520 01256999998654
No 130
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.91 E-value=6e-23 Score=213.49 Aligned_cols=278 Identities=9% Similarity=0.097 Sum_probs=182.4
Q ss_pred EeecccCcceeeee--cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCC
Q 005140 238 VWGGANTFNRLMRY--AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGG 315 (712)
Q Consensus 238 iw~~~~~~~~~~~~--~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~ 315 (712)
||.+. +...+... +...|.+++|||||++|++++.+ + ++||++.+++.+.....+. ..
T Consensus 3 i~s~~-~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~----------~-~~iw~~~~~~~~~~~~~~~-~~------- 62 (355)
T 3vu4_A 3 LGSMI-TRNPIVPENHVSNPVTDYEFNQDQSCLILSTLK----------S-FEIYNVHPVAHIMSQEMRH-LS------- 62 (355)
T ss_dssp -----------------CCCCCEEEECTTSSEEEEECSS----------E-EEEEEETTEEEEEEEECSC-CC-------
T ss_pred ccccc-ccCCccccccCCCceEEEEECCCCCEEEEEcCC----------E-EEEEecCCcceeeeeecCC-eE-------
Confidence 44554 44444432 34459999999999999999877 4 7899998877655443321 11
Q ss_pred cCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEE
Q 005140 316 VAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSL 393 (712)
Q Consensus 316 ~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~ 393 (712)
.+.|++ ++++++..+ +++|++||+.+++.+.... +...|.++.|+++...++ .++ .|.+
T Consensus 63 -------~~~~~~-~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~--------~~~--~i~i 123 (355)
T 3vu4_A 63 -------KVRMLH-RTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVS--------YGD--VISV 123 (355)
T ss_dssp -------EEEECT-TSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEE--------ETT--EEEE
T ss_pred -------EEEEcC-CCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEE--------EcC--EEEE
Confidence 578888 888876544 7899999999988776553 345689999988653332 222 3445
Q ss_pred EecCCc-cceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEe
Q 005140 394 VQIPSK-EELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWE 472 (712)
Q Consensus 394 ~~~~~~-~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~s 472 (712)
|++... +.+.... .+...++++
T Consensus 124 ~d~~~~~~~~~~~~---------------------------------------------------------~~~~~~~~s 146 (355)
T 3vu4_A 124 FKFGNPWKRITDDI---------------------------------------------------------RFGGVCEFS 146 (355)
T ss_dssp EESSTTCCBSSCCE---------------------------------------------------------EEEEEEEEE
T ss_pred EECCCCceeeEEec---------------------------------------------------------cCCceEEEE
Confidence 554432 1111100 011223445
Q ss_pred eCCCEEEEE--EcCCCCCeEEEEEeeccccc---------CceeE-EEEeCCC--ceeEEEEccCCCeEEEEeccCCCce
Q 005140 473 PKGHRFAVI--HGDSPRPDISFYSMRTAQHA---------GRVSK-LTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQ 538 (712)
Q Consensus 473 p~g~~l~~~--~~d~~~~~v~i~d~~~~~~~---------~~~~~-~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~ 538 (712)
| .+++++ +.++ .|++||+.++... ....+ +..+.+| .|++++|+|+|++|++++. ||+
T Consensus 147 ~--~~la~~sg~~~g---~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~---d~~ 218 (355)
T 3vu4_A 147 N--GLLVYSNEFNLG---QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ---DGT 218 (355)
T ss_dssp T--TEEEEEESSCTT---CEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEET---TCS
T ss_pred c--cEEEEeCCCcCc---EEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC---CCC
Confidence 5 667765 4466 8999999764300 00111 3445544 7999999999999999998 998
Q ss_pred -EEEEECCcceeeeec----cccceeeEEECCCCCEEEEEEccceeccccEEEEEecCceeeee----------------
Q 005140 539 -LEFYNVDELETMATA----EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRT---------------- 597 (712)
Q Consensus 539 -v~iwd~~~~~~~~~~----~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~---------------- 597 (712)
|++||+.+++.+... |...|++++|+|+|++|++++. |+.++||++........
T Consensus 219 ~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~-----d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (355)
T 3vu4_A 219 IIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSD-----KWTLHVFEIFNDQDNKRHALKGWINMKYFQSEW 293 (355)
T ss_dssp EEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEET-----TCEEEEEESSCCSCCCSEETTTTEECCCCCCSS
T ss_pred EEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEEC-----CCEEEEEEccCCCCcccccccceeecccccccc
Confidence 999999988877652 6689999999999999999999 99999999863211100
Q ss_pred ----------cccceeeeEEecCCCCCCChhhHHHHH
Q 005140 598 ----------LKDHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 598 ----------~~~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
.......++|+|++..|++++.|+.++
T Consensus 294 ~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~ 330 (355)
T 3vu4_A 294 SLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIE 330 (355)
T ss_dssp CSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEE
T ss_pred ceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEE
Confidence 011236689999999999988877553
No 131
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.91 E-value=1.3e-22 Score=209.79 Aligned_cols=299 Identities=12% Similarity=0.138 Sum_probs=189.4
Q ss_pred ccchhhccCCCCCceEEEEECCeeEEEecCCCCC---CCcccccCCCcccceEEEcC--CCcEEEEEecCc-eEEeeccc
Q 005140 170 ENLQKWLTDEKARDQFVIRSGTDTEVLWNDARHL---KPEPVYKRSYWTESFVQWSP--LGTYLATVHRQG-AAVWGGAN 243 (712)
Q Consensus 170 ~~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~---~~~~~~~~~~~~v~~v~~Sp--dg~~lat~~~~~-i~iw~~~~ 243 (712)
..+.+..++|+++ .+++...++.+.+|+..... .....+.+|...|++++|+| +|++|++++.++ |+||+..
T Consensus 12 ~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~- 89 (351)
T 3f3f_A 12 DLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEED- 89 (351)
T ss_dssp SCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEC-
T ss_pred cceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecC-
Confidence 3455666677665 66777888999999984322 24456688999999999999 699999999999 8899998
Q ss_pred Cc---------ceeeee-cCC-CeeEEEecCC--CCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCccccc
Q 005140 244 TF---------NRLMRY-AHP-QVKLIDFSPG--EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAV 310 (712)
Q Consensus 244 ~~---------~~~~~~-~~~-~v~~i~~Spd--g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~ 310 (712)
.. ..+..+ .|. .|.+++|+|+ +++|++++.+ +.|++||+.+++.+..+.........
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----------g~v~iwd~~~~~~~~~~~~~~~~~~~ 159 (351)
T 3f3f_A 90 PDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGND----------GILRLYDALEPSDLRSWTLTSEMKVL 159 (351)
T ss_dssp TTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT----------CEEEEEECSSTTCTTCCEEEEEEESC
T ss_pred CCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCC----------CcEEEecCCChHHhcccccccccccc
Confidence 44 334444 243 4999999999 9999999999 99999999988866555421110000
Q ss_pred CCCCCcCCCCcCeEEecCCC---CCEEEEec-CCeEEEEEcCCcee--cccccccccCeeeEEECCCC----CeEEEEee
Q 005140 311 GGTGGVAGVSWPVFRWGGGK---DKYFAKLG-KNMISVYETESFTL--IDKKSLKVENVMDFSWSPTD----PIISLFVP 380 (712)
Q Consensus 311 ~~~~~~~~~~~~~~~~s~~d---g~~la~~~-d~~i~iwd~~~~~~--~~~~~~~~~~v~~~~~sp~~----~~la~~~~ 380 (712)
............++.|+| + +.++++++ ++.+.+|+...+.. +.....|...|.+++|+|++ ++|++
T Consensus 160 ~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s--- 235 (351)
T 3f3f_A 160 SIPPANHLQSDFCLSWCP-SRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIAT--- 235 (351)
T ss_dssp SCCCSSCSCCCEEEEECC-CSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEE---
T ss_pred ccccCCcccceeEEEecc-CCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEE---
Confidence 000000000011789999 7 88999888 88887777766554 33444577789999999998 78888
Q ss_pred cCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEec
Q 005140 381 ELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELD 460 (712)
Q Consensus 381 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~ 460 (712)
++.|+.+++|.+............ ........+++....++.+..... ....+.+...........+.
T Consensus 236 --~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 303 (351)
T 3f3f_A 236 --GCKDGRIRIFKITEKLSPLASEES--LTNSNMFDNSADVDMDAQGRSDSN--------TEEKAELQSNLQVELLSEHD 303 (351)
T ss_dssp --EETTSCEEEEEEEECC-------------------------------------------------CCSEEEEEEEEEC
T ss_pred --EcCCCeEEEEeCCCCcCccccCCc--ccceeccCCCcccccccccccccc--------cceeeeecccccccEEEEEe
Confidence 778888888877654322111111 001111122233333222222111 01111111111112234566
Q ss_pred CCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeeccc
Q 005140 461 NKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQ 499 (712)
Q Consensus 461 ~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~ 499 (712)
+|...|.+++|+|++++|++++.|+ .|++|++.++.
T Consensus 304 ~h~~~v~~~~~s~~~~~l~s~~~dg---~v~iw~~~~~~ 339 (351)
T 3f3f_A 304 DHNGEVWSVSWNLTGTILSSAGDDG---KVRLWKATYSN 339 (351)
T ss_dssp TTSSCEEEEEECSSSCCEEEEETTS---CEEEEEECTTS
T ss_pred cccccEEEEEEcCCCCEEEEecCCC---cEEEEecCcCc
Confidence 8999999999999999999999999 99999997654
No 132
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.91 E-value=1e-22 Score=218.27 Aligned_cols=257 Identities=11% Similarity=0.228 Sum_probs=202.1
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEE
Q 005140 255 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYF 334 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~l 334 (712)
.|.+++| ++++|++|+.+ +.|++||+.+++.+..+.+|...+. +++| ++++|
T Consensus 135 ~v~~~~~--d~~~l~~g~~d----------g~i~iwd~~~~~~~~~~~~h~~~v~-------------~l~~---~~~~l 186 (435)
T 1p22_A 135 GVYCLQY--DDQKIVSGLRD----------NTIKIWDKNTLECKRILTGHTGSVL-------------CLQY---DERVI 186 (435)
T ss_dssp CEEEEEC--CSSEEEEEESS----------SCEEEEESSSCCEEEEECCCSSCEE-------------EEEC---CSSEE
T ss_pred cEEEEEE--CCCEEEEEeCC----------CeEEEEeCCCCeEEEEEcCCCCcEE-------------EEEE---CCCEE
Confidence 4777766 89999999999 9999999999999999999887752 4544 67899
Q ss_pred EEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecce
Q 005140 335 AKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDC 413 (712)
Q Consensus 335 a~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 413 (712)
++++ ||.|++|++.+++.+.....|...|.+++|++ ..+++ ++.++.+++|... +..
T Consensus 187 ~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s-----~s~dg~i~vwd~~--~~~------------- 244 (435)
T 1p22_A 187 ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVT-----CSKDRSIAVWDMA--SPT------------- 244 (435)
T ss_dssp EEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEE-----EETTSCEEEEECS--SSS-------------
T ss_pred EEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEE-----eeCCCcEEEEeCC--CCC-------------
Confidence 9998 99999999999988777767777889988874 46666 5566665554332 111
Q ss_pred eEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEE
Q 005140 414 KMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFY 493 (712)
Q Consensus 414 ~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~ 493 (712)
.......+.+|...|.+++| ++++|++++.|+ .|++|
T Consensus 245 --------------------------------------~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg---~i~vw 281 (435)
T 1p22_A 245 --------------------------------------DITLRRVLVGHRAAVNVVDF--DDKYIVSASGDR---TIKVW 281 (435)
T ss_dssp --------------------------------------CCEEEEEECCCSSCEEEEEE--ETTEEEEEETTS---EEEEE
T ss_pred --------------------------------------CceeeeEecCCCCcEEEEEe--CCCEEEEEeCCC---eEEEE
Confidence 00011234478889999998 789999999999 99999
Q ss_pred EeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCE
Q 005140 494 SMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRY 569 (712)
Q Consensus 494 d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~ 569 (712)
|+.++. .+..+.++ .+.++.| +++++++++. ||.|++||+.+++.+.. .|...+++++| +|.+
T Consensus 282 d~~~~~------~~~~~~~~~~~v~~~~~--~~~~l~~g~~---dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~ 348 (435)
T 1p22_A 282 NTSTCE------FVRTLNGHKRGIACLQY--RDRLVVSGSS---DNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKR 348 (435)
T ss_dssp ETTTCC------EEEEEECCSSCEEEEEE--ETTEEEEEET---TSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSE
T ss_pred ECCcCc------EEEEEcCCCCcEEEEEe--CCCEEEEEeC---CCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCE
Confidence 997654 45555544 6777777 5789999998 99999999998887765 56688999999 7899
Q ss_pred EEEEEccceeccccEEEEEecCc----------eeee--ecccceeeeEEecCCCCCCChhhHHHHH
Q 005140 570 VATAVTSVHEMENGFNIWSFNGK----------LLYR--TLKDHFFQFLWRPRPPSFLTPEKEEEIA 624 (712)
Q Consensus 570 l~t~s~~~~~~d~~v~iw~~~g~----------~~~~--~~~~~i~~~~w~p~~~~l~s~~~d~~i~ 624 (712)
|++++. |+.|++|++... .+.. .|...|.+++| ++..|++++.|+.|+
T Consensus 349 l~sg~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~ 408 (435)
T 1p22_A 349 IVSGAY-----DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTIL 408 (435)
T ss_dssp EEEEET-----TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEE
T ss_pred EEEEeC-----CCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEE
Confidence 999999 999999998632 2332 36688999999 788999999998775
No 133
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=9.2e-22 Score=224.76 Aligned_cols=327 Identities=12% Similarity=0.114 Sum_probs=211.9
Q ss_pred ceEEEEECCeeEEEecCCCCCCCc-ccccCCC-----------------cccceEEEcCCCcEEEEEecCceEEeecccC
Q 005140 183 DQFVIRSGTDTEVLWNDARHLKPE-PVYKRSY-----------------WTESFVQWSPLGTYLATVHRQGAAVWGGANT 244 (712)
Q Consensus 183 ~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~-----------------~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~ 244 (712)
+.|+...+++ + +|+. ..++.+ ..+..|. ..+.+++|||| ++++++....+.+||.. +
T Consensus 36 ~~~~~~~~~~-i-~~d~-~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~~~~i~~~d~~-~ 110 (706)
T 2z3z_A 36 DNYVFIEGDD-L-VFNK-ANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFTQGGLVGFDML-A 110 (706)
T ss_dssp TEEEEEETTE-E-EEEC--------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEETTEEEEEETT-T
T ss_pred CeEEEEeCCc-E-EEEC-CCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEECCEEEEEECC-C
Confidence 3677777777 5 9998 344441 2222222 46899999999 66666666559999998 6
Q ss_pred cceeeeecC-CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC-----CceeeeccCCCcccccCCC---CC
Q 005140 245 FNRLMRYAH-PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT-----GKVMRDFKGSADEFAVGGT---GG 315 (712)
Q Consensus 245 ~~~~~~~~~-~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~-----g~~~~~~~~~~~~~~~~~~---~~ 315 (712)
........+ ..+.+++|||||++|+++ .+ +.|++|++.+ ++..+....+...+..+.. ..
T Consensus 111 ~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~----------~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee 179 (706)
T 2z3z_A 111 RKVTYLFDTNEETASLDFSPVGDRVAYV-RN----------HNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQRE 179 (706)
T ss_dssp TEEEEEECCTTCCTTCEECTTSSEEEEE-ET----------TEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGC
T ss_pred CceEEccCCcccccCCcCCCCCCEEEEE-EC----------CeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhh
Confidence 655444444 348999999999999996 45 6899999988 7766554443331100000 00
Q ss_pred cCCCCcCeEEecCCCCCEEEEec----------------------------------CCeEEEEEcCCceeccccc--cc
Q 005140 316 VAGVSWPVFRWGGGKDKYFAKLG----------------------------------KNMISVYETESFTLIDKKS--LK 359 (712)
Q Consensus 316 ~~~~~~~~~~~s~~dg~~la~~~----------------------------------d~~i~iwd~~~~~~~~~~~--~~ 359 (712)
. + ....+.||| ||++|++++ +..|.+||+.++....... .+
T Consensus 180 ~-~-~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~ 256 (706)
T 2z3z_A 180 F-G-IEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPK 256 (706)
T ss_dssp T-T-CCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCT
T ss_pred c-C-CCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCC
Confidence 0 0 001589999 999999875 3679999999876543221 23
Q ss_pred ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeee-----cceeEEECc--CCCEEEEEEcccc
Q 005140 360 VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV-----SDCKMYWQS--SGDYLAVKVDRYT 432 (712)
Q Consensus 360 ~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~--~g~~l~~~~~~~~ 432 (712)
...+..++|+|||+.|++..... ......|++|+..+.+.......... ....+.|+| +|++++++..++.
T Consensus 257 ~~~~~~~~~spdg~~l~~~~~~~--~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~ 334 (706)
T 2z3z_A 257 EKFLTNLSWSPDENILYVAEVNR--AQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGW 334 (706)
T ss_dssp TCEEEEEEECTTSSEEEEEEECT--TSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSS
T ss_pred ceeEeeEEEECCCCEEEEEEeCC--CCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCc
Confidence 34588999999999998743322 34456889999887632222111111 113468999 9998877665544
Q ss_pred cccccccccEEEEEEecCCcceeEEEecCCCCceEE-EEEeeCCCEEEEEEcCCC--CCeEEEEEeecccccCceeEEEE
Q 005140 433 KTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIA-FAWEPKGHRFAVIHGDSP--RPDISFYSMRTAQHAGRVSKLTT 509 (712)
Q Consensus 433 ~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~-~~~sp~g~~l~~~~~d~~--~~~v~i~d~~~~~~~~~~~~~~~ 509 (712)
..||.++..+... ..+..|...+.+ ++|+|+|+.|++++.+.. ...|..|++.++. ...
T Consensus 335 ---------~~l~~~~~~~~~~--~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-------~~~ 396 (706)
T 2z3z_A 335 ---------NHLYLYDTTGRLI--RQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-------TKD 396 (706)
T ss_dssp ---------CEEEEEETTSCEE--EECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-------CEE
T ss_pred ---------cEEEEEECCCCEE--EecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-------cee
Confidence 6788887444332 345567777877 799999999988887642 1245555554432 122
Q ss_pred e-CCCceeEEEEccCCCeEEEEeccC-CCceEEEEECCcce
Q 005140 510 L-KGKQANALFWSPSGRFIVLAGLKG-FNGQLEFYNVDELE 548 (712)
Q Consensus 510 ~-~~~~v~~l~~spdg~~l~~~~~~~-~dg~v~iwd~~~~~ 548 (712)
+ ....+.+++|||||++|++++.+. ..+.|++||+.+++
T Consensus 397 l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 397 LTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp SCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred ccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 2 234688999999999998875422 23679999998776
No 134
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.91 E-value=1.8e-22 Score=200.25 Aligned_cols=274 Identities=9% Similarity=0.051 Sum_probs=177.2
Q ss_pred CCCCceEEEEECCeeEEEecCCCCC---CCcccccCCCcccceEEEcCCCcEEEEEecCceEEeecccCcceeeeecCCC
Q 005140 179 EKARDQFVIRSGTDTEVLWNDARHL---KPEPVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQ 255 (712)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~w~~~~~~---~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~~ 255 (712)
+.++...+++..+.++.+|+.. .. .....++.|..+|..++++||-.-|++..- ..++...
T Consensus 50 ~~~~~~~~~~~~~~~v~lw~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---------------~~~~~~~ 113 (356)
T 2w18_A 50 AGCKEPCIITACEDVVSLWKAL-DAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVAL---------------GNLEIRE 113 (356)
T ss_dssp ---CEEEEEEEESSEEEEEEES-SSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEE---------------CSSSEEE
T ss_pred CCCCccEEEEeccceEEEcccC-CCccceeeEEEeccCceeEEEEEcCcccceeeeee---------------ccccccc
Confidence 5577778889999999999983 44 566678899999999999998755544321 1223345
Q ss_pred eeEEEecCC----CCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeee-ccCCCcccccCCCCCcCCCCcCeEEecCCC
Q 005140 256 VKLIDFSPG----EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRD-FKGSADEFAVGGTGGVAGVSWPVFRWGGGK 330 (712)
Q Consensus 256 v~~i~~Spd----g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d 330 (712)
|..++|||| ++++++++.+ +.+|++.+|+.+.+ ..+|
T Consensus 114 v~sla~spd~~~~~~~l~s~g~~------------~~v~~l~~g~lv~ss~~g~-------------------------- 155 (356)
T 2w18_A 114 IRALFCSSDDESEKQVLLKSGNI------------KAVLGLTKRRLVSSSGTLS-------------------------- 155 (356)
T ss_dssp EEEECC------CCEEEEEEEEE------------EEEEEETTTEEEEEESSST--------------------------
T ss_pred eEEEEECCCccccccEEEeCCCe------------EEEEecCCCcEEEecccCC--------------------------
Confidence 889999999 9999997744 77887644443333 2222
Q ss_pred CCEEEEecCCeEEEEEc-CCceecccccccccCeeeEEECC---CCCeEEEEeecCCCCCCCeEEEEEecCCccceeeee
Q 005140 331 DKYFAKLGKNMISVYET-ESFTLIDKKSLKVENVMDFSWSP---TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKN 406 (712)
Q Consensus 331 g~~la~~~d~~i~iwd~-~~~~~~~~~~~~~~~v~~~~~sp---~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 406 (712)
++.|++|++ ++++.+.....|...+..++|+| ++..|++ ++.|+.++|| ++.+.+.+....
T Consensus 156 --------d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaS-----gS~D~TIkIW--Dl~TGk~l~tL~ 220 (356)
T 2w18_A 156 --------DQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLG-----TTIMNNIVIW--NLKTGQLLKKMH 220 (356)
T ss_dssp --------TCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEE-----EETTSEEEEE--ETTTCCEEEEEE
T ss_pred --------CCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEE-----ecCCCcEEEE--ECCCCcEEEEEc
Confidence 566666666 34555555557777788888888 6788888 6677776655 444433322221
Q ss_pred eeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEE--------
Q 005140 407 LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRF-------- 478 (712)
Q Consensus 407 ~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l-------- 478 (712)
.+. .+...+.+++|+|+|.++
T Consensus 221 g~~---------------------------------------------------~~v~~v~~vafSpdG~~lvs~s~~~~ 249 (356)
T 2w18_A 221 IDD---------------------------------------------------SYQASVCHKAYSEMGLLFIVLSHPCA 249 (356)
T ss_dssp CCC------------------------------------------------------CCCEEEEEEETTEEEEEEC----
T ss_pred CCC---------------------------------------------------cceeeeEEEEECCCCCEEEEeccCCC
Confidence 100 011234445555555554
Q ss_pred ----EEEEcCCCCCeEEEEEeecccccCceeEEEEe----C-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCccee
Q 005140 479 ----AVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL----K-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET 549 (712)
Q Consensus 479 ----~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~----~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~ 549 (712)
++++.|+ +|++|+..++. .+..+ + ++....+..+.+|.++++++. |++|+|||+.++++
T Consensus 250 ~w~laSGs~D~---tIklWd~~tgk------~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~---DgTIkIWDl~tGk~ 317 (356)
T 2w18_A 250 KESESLRSPVF---QLIVINPKTTL------SVGVMLYCLPPGQAGRFLEGDVKDHCAAAILT---SGTIAIWDLLLGQC 317 (356)
T ss_dssp --------CCE---EEEEEETTTTE------EEEEEEECCCTTCCCCEEEEEEETTEEEEEET---TSCEEEEETTTCSE
T ss_pred cceeeccCCCc---EEEEEECCCCE------EEEEEEeeccCCCcceeEccccCCCEEEEEcC---CCcEEEEECCCCcE
Confidence 4566677 99999987654 22222 2 333233344445888999988 99999999999998
Q ss_pred eee--cccccee-eEEECCCCCEEEEEEccceeccccEEEEEe
Q 005140 550 MAT--AEHFMAT-DVEWDPTGRYVATAVTSVHEMENGFNIWSF 589 (712)
Q Consensus 550 ~~~--~~~~~v~-~~~~spdg~~l~t~s~~~~~~d~~v~iw~~ 589 (712)
+.+ .|...+. .++|||||++|++|+. |++|+||++
T Consensus 318 l~tL~gH~~~vvs~vafSPDG~~LaSGS~-----D~TIklWd~ 355 (356)
T 2w18_A 318 TALLPPVSDQHWSFVKWSGTDSHLLAGQK-----DGNIFVYHY 355 (356)
T ss_dssp EEEECCC--CCCCEEEECSSSSEEEEECT-----TSCEEEEEE
T ss_pred EEEecCCCCCeEEEEEECCCCCEEEEEEC-----CCcEEEecC
Confidence 887 3555444 5899999999999999 999999996
No 135
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.3e-21 Score=202.53 Aligned_cols=255 Identities=10% Similarity=0.062 Sum_probs=186.7
Q ss_pred eEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeeccc--------Ccceeeee--c
Q 005140 184 QFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGAN--------TFNRLMRY--A 252 (712)
Q Consensus 184 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~--------~~~~~~~~--~ 252 (712)
.++.++.|+++.+|+. ..++....+. ...|.++.|+|+ +++++.|+ +++|+..+ +...+..+ .
T Consensus 50 ~l~sg~~Dg~v~iwd~-~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 123 (343)
T 3lrv_A 50 VCMCRCEDGALHFTQL-KDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVD 123 (343)
T ss_dssp EEEEEEETTEEEEEEE-SSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred EEEEECCCCcEEEEEC-CCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecC
Confidence 5677778999999998 4555555555 467888999998 99999998 78997651 22222222 2
Q ss_pred CC-CeeEEEecC--CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCc-ccccCCCCCcCCCCcCeEEecC
Q 005140 253 HP-QVKLIDFSP--GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSAD-EFAVGGTGGVAGVSWPVFRWGG 328 (712)
Q Consensus 253 ~~-~v~~i~~Sp--dg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~ 328 (712)
|. .|.+++|+| ++++|++++.| ++|++||+.+++.+..+..+.. .+. +++|+|
T Consensus 124 ~~~~v~~~~~~~~~~~~~l~s~s~d----------g~i~~wd~~~~~~~~~~~~~~~~~i~-------------~~~~~p 180 (343)
T 3lrv_A 124 SANEIIYMYGHNEVNTEYFIWADNR----------GTIGFQSYEDDSQYIVHSAKSDVEYS-------------SGVLHK 180 (343)
T ss_dssp CSSCEEEEECCC---CCEEEEEETT----------CCEEEEESSSSCEEEEECCCSSCCCC-------------EEEECT
T ss_pred CCCCEEEEEcCCCCCCCEEEEEeCC----------CcEEEEECCCCcEEEEEecCCCCceE-------------EEEECC
Confidence 33 499999999 99999999999 9999999999998776644433 221 799999
Q ss_pred CCCCEEEEec-CCeEEEEEcCCceec-ccccc-cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeee
Q 005140 329 GKDKYFAKLG-KNMISVYETESFTLI-DKKSL-KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK 405 (712)
Q Consensus 329 ~dg~~la~~~-d~~i~iwd~~~~~~~-~~~~~-~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 405 (712)
++.+|++++ |+.|++||+.++..+ ..... |...|.+++|+|++.+|++ ++ ++ .|.+|++...+.+...
T Consensus 181 -dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s-----~~-~~--~v~iwd~~~~~~~~~~ 251 (343)
T 3lrv_A 181 -DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVV-----EC-DQ--TVVCFDLRKDVGTLAY 251 (343)
T ss_dssp -TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEE-----EE-SS--BEEEEETTSSTTCBSS
T ss_pred -CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEE-----Ee-CC--eEEEEEcCCCCcceee
Confidence 999999988 999999999988766 45555 7788999999999999998 55 33 5666777665543322
Q ss_pred ee-----eeecceeEEECcCCCEEEEEEc-ccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee---CCC
Q 005140 406 NL-----FSVSDCKMYWQSSGDYLAVKVD-RYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP---KGH 476 (712)
Q Consensus 406 ~~-----~~~~~~~~~~s~~g~~l~~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp---~g~ 476 (712)
.. .......+.|+|+|++|++++. ++. +.+|++........ . .++..++|+| +++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~---------i~v~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~ 315 (343)
T 3lrv_A 252 PTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNS---------LTIYKFDKKTKNWT---K----DEESALCLQSDTADFT 315 (343)
T ss_dssp CCCBC-----CCEEEEECTTSSEEEEEETTTTE---------EEEEEECTTTCSEE---E----EEEEECCC----CCCC
T ss_pred cccccccccccceEEEECCCCCEEEEecCCCCc---------EEEEEEcccccceE---e----cCceeEecCccccccc
Confidence 21 1111134899999999999887 655 78998865433221 1 4567788888 888
Q ss_pred EEEEEEcCCCCCeEEEEEe
Q 005140 477 RFAVIHGDSPRPDISFYSM 495 (712)
Q Consensus 477 ~l~~~~~d~~~~~v~i~d~ 495 (712)
.+++++.++ .+.++-.
T Consensus 316 ~l~~~~~d~---~~~~~~~ 331 (343)
T 3lrv_A 316 DMDVVCGDG---GIAAILK 331 (343)
T ss_dssp EEEEEEETT---EEEEEEE
T ss_pred eeEEEecCC---ceEEEEe
Confidence 999999888 6776543
No 136
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.89 E-value=1.7e-20 Score=192.95 Aligned_cols=288 Identities=11% Similarity=0.113 Sum_probs=195.8
Q ss_pred EEecCCCCE-EEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEe
Q 005140 259 IDFSPGEKY-LVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKL 337 (712)
Q Consensus 259 i~~Spdg~~-l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~ 337 (712)
..|++++++ +++.+.+ +.|.+||+.+++.+..+..+.... .++|+| +|++++.+
T Consensus 3 ~~~~~~~~~~~v~~~~~----------~~v~~~d~~~~~~~~~~~~~~~~~--------------~~~~s~-dg~~l~~~ 57 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHL----------RRISFFSTDTLEILNQITLGYDFV--------------DTAITS-DCSNVVVT 57 (331)
T ss_dssp ----CCCCEEEEEEGGG----------TEEEEEETTTCCEEEEEECCCCEE--------------EEEECS-SSCEEEEE
T ss_pred eeEcCCCCEEEEEecCC----------CeEEEEeCcccceeeeEEccCCcc--------------eEEEcC-CCCEEEEE
Confidence 456776665 5666666 899999999999888776553332 589999 99966655
Q ss_pred c--CCeEEEEEcCCcee-cccccccccCeeeEEECCCCCeEEEEeecCCCCC-CCeEEEEEecCCccceeeeeeeeecce
Q 005140 338 G--KNMISVYETESFTL-IDKKSLKVENVMDFSWSPTDPIISLFVPELGGGN-QPARVSLVQIPSKEELRQKNLFSVSDC 413 (712)
Q Consensus 338 ~--d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~ 413 (712)
+ ++.|.+||+.++.. ......+.....+++|+|+|++|++ +..+ +...|++|+..+.+.+..... .....
T Consensus 58 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~-----~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~ 131 (331)
T 3u4y_A 58 SDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVT-----VTGLNHPFNMQSYSFLKNKFISTIPI-PYDAV 131 (331)
T ss_dssp ESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEE-----CCCSSSSCEEEEEETTTTEEEEEEEC-CTTEE
T ss_pred eCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEE-----ecCCCCcccEEEEECCCCCeEEEEEC-CCCcc
Confidence 5 78999999998876 4333333333444999999999885 3333 334788889887765554332 22345
Q ss_pred eEEECcCCCEEEEEEccccccccccccc-EEEEEEecCCcceeE-EEecCCCCceEEEEEeeCCCEEEEEEc-CCCCCeE
Q 005140 414 KMYWQSSGDYLAVKVDRYTKTKKSTYTG-FELFRIKERDIPIEV-LELDNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDI 490 (712)
Q Consensus 414 ~~~~s~~g~~l~~~~~~~~~~~~~~~~~-~~l~~l~~~~~~~~~-~~l~~h~~~v~~~~~sp~g~~l~~~~~-d~~~~~v 490 (712)
.+.|+|+|+++++..... .. +.+|++...+..... .....+...+..++|+|+|++++++.. ++ .|
T Consensus 132 ~~~~spdg~~l~~~~~~~--------~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~---~v 200 (331)
T 3u4y_A 132 GIAISPNGNGLILIDRSS--------ANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGN---SI 200 (331)
T ss_dssp EEEECTTSSCEEEEEETT--------TTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTT---EE
T ss_pred ceEECCCCCEEEEEecCC--------CceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCC---eE
Confidence 688999999877765432 23 678887754432211 111133556889999999998877765 45 89
Q ss_pred EEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCccee--eeec------cc---cce
Q 005140 491 SFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET--MATA------EH---FMA 558 (712)
Q Consensus 491 ~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~--~~~~------~~---~~v 558 (712)
.+||+.++.. ...+..+. +..+..++|+|+|++|++++.+ ++.|.+||+.+++. +... +. ...
T Consensus 201 ~v~d~~~~~~---~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (331)
T 3u4y_A 201 GILETQNPEN---ITLLNAVGTNNLPGTIVVSRDGSTVYVLTES--TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGA 275 (331)
T ss_dssp EEEECSSTTS---CEEEEEEECSSCCCCEEECTTSSEEEEECSS--EEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTC
T ss_pred EEEECCCCcc---cceeeeccCCCCCceEEECCCCCEEEEEEcC--CCEEEEEECCCCceeeecccccccccCCCCcccc
Confidence 9999976542 11244444 3467889999999988776531 68899999998776 2211 11 223
Q ss_pred eeEEECCCCCEEEEEEccceeccccEEEEEecCceeeee
Q 005140 559 TDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRT 597 (712)
Q Consensus 559 ~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~ 597 (712)
..++|+|||++|++++.. ++.+.+|++.+..+...
T Consensus 276 ~~~~~spdg~~l~v~~~~----~~~v~v~d~~~~~~~~~ 310 (331)
T 3u4y_A 276 NQMALNKTETKLFISANI----SRELKVFTISGKVVGYV 310 (331)
T ss_dssp CCEEECTTSSEEEEEETT----TTEEEEEETTSCEEEEC
T ss_pred cceEECCCCCEEEEecCC----CCcEEEEEecCCcccce
Confidence 568999999999877763 67999999987665443
No 137
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.89 E-value=3.3e-21 Score=220.84 Aligned_cols=343 Identities=10% Similarity=0.046 Sum_probs=210.6
Q ss_pred cCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCc---ccceEEEcCCCcEEEEEecC---------c-eEEeeccc
Q 005140 177 TDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYW---TESFVQWSPLGTYLATVHRQ---------G-AAVWGGAN 243 (712)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~---~v~~v~~Spdg~~lat~~~~---------~-i~iw~~~~ 243 (712)
..|+|+ ++....++++.+|+. ..++....+..|.. .+.+++|||||++||+++.+ + +.+||+.
T Consensus 24 ~spdg~--~~~~~~dg~i~~~d~-~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~- 99 (723)
T 1xfd_A 24 WISDTE--FIYREQKGTVRLWNV-ETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIP- 99 (723)
T ss_dssp BSSSSC--BCCCCSSSCEEEBCG-GGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESS-
T ss_pred EcCCCc--EEEEeCCCCEEEEEC-CCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECC-
Confidence 345565 444456788889998 45555566666654 48999999999999999863 3 6799998
Q ss_pred Cccee--eee-cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCccc-ccCCCCCc--
Q 005140 244 TFNRL--MRY-AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEF-AVGGTGGV-- 316 (712)
Q Consensus 244 ~~~~~--~~~-~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~-~~~~~~~~-- 316 (712)
++... ... .+. .+.+++|||||++||+++.. .|++||+.+++..+....+...+ ..+....+
T Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~-----------~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ 168 (723)
T 1xfd_A 100 HGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFEN-----------NIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYE 168 (723)
T ss_dssp SCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETT-----------EEEEESSSSSCCEEEECCCBTTTEEEEECCHHHH
T ss_pred CCceEeccCCccccccccccEECCCCCEEEEEECC-----------eEEEEECCCCceEEEecCCCCCceECcccceeEE
Confidence 55431 111 122 28899999999999998864 79999998888766554433211 00000000
Q ss_pred ---CCCCcCeEEecCCCCCEEEEec-CC----------------------------------eEEEEEcCCceecccccc
Q 005140 317 ---AGVSWPVFRWGGGKDKYFAKLG-KN----------------------------------MISVYETESFTLIDKKSL 358 (712)
Q Consensus 317 ---~~~~~~~~~~s~~dg~~la~~~-d~----------------------------------~i~iwd~~~~~~~~~~~~ 358 (712)
.+ ....++||| ||++|++++ ++ .|.+||+.++........
T Consensus 169 ee~~~-~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~ 246 (723)
T 1xfd_A 169 EEILK-THIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMP 246 (723)
T ss_dssp HTTSS-SSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCC
T ss_pred EEecc-CcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeC
Confidence 00 001589999 999999887 32 789999987764322222
Q ss_pred c------ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeee-e--c--ceeEEECcCCCEEEEE
Q 005140 359 K------VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFS-V--S--DCKMYWQSSGDYLAVK 427 (712)
Q Consensus 359 ~------~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~--~--~~~~~~s~~g~~l~~~ 427 (712)
+ ...+..++|||||++|++.... ......|++|+..+.+......... . . ...+.|+|+|+.|++.
T Consensus 247 ~~~~~~~~~~~~~~~~SpDg~~l~~~~~~---~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 323 (723)
T 1xfd_A 247 PDDPRMREYYITMVKWATSTKVAVTWLNR---AQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFI 323 (723)
T ss_dssp CCCGGGSSEEEEEEEESSSSEEEEEEEET---TSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred CccCCCccceeEEEEEeCCCeEEEEEEcC---CCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEE
Confidence 1 3458899999999988764321 2345678899987766433222111 1 1 1257899999988876
Q ss_pred -EcccccccccccccEEEEEEe-cCCcc-eeEEEecCCCCceEE-EEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCc
Q 005140 428 -VDRYTKTKKSTYTGFELFRIK-ERDIP-IEVLELDNKNDKIIA-FAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGR 503 (712)
Q Consensus 428 -~~~~~~~~~~~~~~~~l~~l~-~~~~~-~~~~~l~~h~~~v~~-~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~ 503 (712)
+..... ......||.++ ..+.. .....+..+...+.. ++|+|+|++|++.+.+.....++||++......
T Consensus 324 ~~~~~~~----~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~-- 397 (723)
T 1xfd_A 324 RAIPQGG----RGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF-- 397 (723)
T ss_dssp EEECCSS----SSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC--
T ss_pred EecccCC----CcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCC--
Confidence 322110 00124566665 22221 001233333444554 699999999998877631127889998643221
Q ss_pred eeEEEEeC-----CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcc
Q 005140 504 VSKLTTLK-----GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL 547 (712)
Q Consensus 504 ~~~~~~~~-----~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~ 547 (712)
....+. ...+..++|||||++|++...+...-...+++..++
T Consensus 398 --~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~ 444 (723)
T 1xfd_A 398 --NRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDK 444 (723)
T ss_dssp --CCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTC
T ss_pred --CcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCC
Confidence 111222 235788999999999988764321112334454433
No 138
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.89 E-value=3e-22 Score=211.31 Aligned_cols=254 Identities=11% Similarity=0.022 Sum_probs=153.4
Q ss_pred ceEEEEECCeeEEEecCCCCC----CCcccccCCCcccceEEEcC--------CCcEEEEEecCc-eEEeecccCcceee
Q 005140 183 DQFVIRSGTDTEVLWNDARHL----KPEPVYKRSYWTESFVQWSP--------LGTYLATVHRQG-AAVWGGANTFNRLM 249 (712)
Q Consensus 183 ~~~~~~~~~~~~~~w~~~~~~----~~~~~~~~~~~~v~~v~~Sp--------dg~~lat~~~~~-i~iw~~~~~~~~~~ 249 (712)
..++..+.|+++.+|+..... .+...+.+|...|++++|+| ||++||+++.|+ |+|||+........
T Consensus 102 ~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~ 181 (393)
T 4gq1_A 102 LFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA 181 (393)
T ss_dssp EEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE
T ss_pred CEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee
Confidence 356677789999999973221 23346789999999999998 899999999999 88999983333334
Q ss_pred eec-CCCeeEEEecCCCC-EEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccc--------------cCCC
Q 005140 250 RYA-HPQVKLIDFSPGEK-YLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFA--------------VGGT 313 (712)
Q Consensus 250 ~~~-~~~v~~i~~Spdg~-~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~--------------~~~~ 313 (712)
.+. +..|.+++|+|++. +|++++.| ++|++||+.+++.......+..... ....
T Consensus 182 ~~~~~~~v~~v~~~p~~~~~l~~~~~d----------~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 251 (393)
T 4gq1_A 182 GYPLSSPGISVQFRPSNPNQLIVGERN----------GNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSS 251 (393)
T ss_dssp EEECSSCEEEEEEETTEEEEEEEEETT----------SEEEEEETTCCC----------CSCCCSEEEESGGGC------
T ss_pred ecCCCCCcEEEEECCCCCceEEecCCC----------CEEEEEECCCCcccccccccCCcccceEEecccccceeeeecc
Confidence 444 45599999999885 79999999 9999999988876544432211100 0000
Q ss_pred CCcCCCCcCeEEec-CCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEE
Q 005140 314 GGVAGVSWPVFRWG-GGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARV 391 (712)
Q Consensus 314 ~~~~~~~~~~~~~s-~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i 391 (712)
+.... ..++.|+ + +++.|++++ |+++++||+..+........+...+..+.++|+...+.
T Consensus 252 ~~~~~--v~~v~~~~~-dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--------------- 313 (393)
T 4gq1_A 252 GIASS--LANVRWIGS-DGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGIS--------------- 313 (393)
T ss_dssp CCSSS--CSEEEEETT-TTCEEEEECTTSEEEEEEC-------------------CCSCSEEEEC---------------
T ss_pred ccccc--ceeeeeecC-CCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccccccc---------------
Confidence 01111 1156775 7 999999999 99999999886654432222222222333332211110
Q ss_pred EEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEE
Q 005140 392 SLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAW 471 (712)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~ 471 (712)
.+...+ ...|
T Consensus 314 ---------------------------------------------------------------------~~~~~~-~~~~ 323 (393)
T 4gq1_A 314 ---------------------------------------------------------------------LFPSLL-GACP 323 (393)
T ss_dssp ---------------------------------------------------------------------SSCCSS-CCEE
T ss_pred ---------------------------------------------------------------------ccCcce-eEEE
Confidence 011111 2233
Q ss_pred ee-CCC-EEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECC
Q 005140 472 EP-KGH-RFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVD 545 (712)
Q Consensus 472 sp-~g~-~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~ 545 (712)
+| .+. ++++++.|+ .|++||+.++... ....-...+|.+++|||||++||+++ ++.+.+|.+.
T Consensus 324 ~~~~~~~~~~sgs~Dg---~V~lwd~~~~~~~----~~~~~~~~~V~svafspdG~~LA~as----~~Gv~lvrL~ 388 (393)
T 4gq1_A 324 HPRYMDYFATAHSQHG---LIQLINTYEKDSN----SIPIQLGMPIVDFCWHQDGSHLAIAT----EGSVLLTRLM 388 (393)
T ss_dssp CSSCTTEEEEEETTTT---EEEEEETTCTTCC----EEEEECSSCEEEEEECTTSSEEEEEE----SSEEEEEEEG
T ss_pred ccCCCCEEEEEECCCC---EEEEEECCCCcEE----EEecCCCCcEEEEEEcCCCCEEEEEe----CCCeEEEEEe
Confidence 33 333 455556688 9999999766532 22222345899999999999999998 4557777654
No 139
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.89 E-value=1.1e-21 Score=194.64 Aligned_cols=270 Identities=11% Similarity=0.101 Sum_probs=180.8
Q ss_pred eeEEEecCCCC---EEEEEcCCCCCCCcCCCccEEEEEEccCC---ceeeeccCCCcccccCCCCCcCCCCcCeEEecCC
Q 005140 256 VKLIDFSPGEK---YLVTYSSHEPSNPRDANRVVINIFDVRTG---KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGG 329 (712)
Q Consensus 256 v~~i~~Spdg~---~l~t~s~d~~~~~~~~~~~~I~iwd~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 329 (712)
+.++-|-.-|- .+++++.. .|++|+..++ ++++++..+...+. .+.++|
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~-----------~v~lw~~~~~~~~~~~~~~~~~~~~v~-------------~~~~~~- 96 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACED-----------VVSLWKALDAWQWEKLYTWHFAEVPVL-------------QIVPVP- 96 (356)
T ss_dssp EEEEEEC----CEEEEEEEESS-----------EEEEEEESSSSBEEEEEEEECCSSCEE-------------EECCCT-
T ss_pred EeeeeeccCCCCccEEEEeccc-----------eEEEcccCCCccceeeEEEeccCceeE-------------EEEEcC-
Confidence 55666655443 57777776 8999999999 88999999987763 578888
Q ss_pred CCCEEEEecCCeEEEEEcCCceecccccccccCeeeEEECCC----CCeEEEEeecCCCCCCCeEEEEEecCCccceeee
Q 005140 330 KDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPT----DPIISLFVPELGGGNQPARVSLVQIPSKEELRQK 405 (712)
Q Consensus 330 dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~----~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 405 (712)
|..-|++..=| .++...|..++++|+ +++++. ++ ...++ +.++
T Consensus 97 ~~~~~~~~~~~----------------~~~~~~v~sla~spd~~~~~~~l~s-----~g--~~~~v--~~l~-------- 143 (356)
T 2w18_A 97 DVYNLVCVALG----------------NLEIREIRALFCSSDDESEKQVLLK-----SG--NIKAV--LGLT-------- 143 (356)
T ss_dssp TCCSCEEEEEC----------------SSSEEEEEEECC------CCEEEEE-----EE--EEEEE--EEET--------
T ss_pred cccceeeeeec----------------cccccceEEEEECCCccccccEEEe-----CC--CeEEE--EecC--------
Confidence 76544443311 134455889999999 888887 22 22333 3322
Q ss_pred eeeeecceeEEECcCCCEEEEEE--cccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee---CCCEEEE
Q 005140 406 NLFSVSDCKMYWQSSGDYLAVKV--DRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP---KGHRFAV 480 (712)
Q Consensus 406 ~~~~~~~~~~~~s~~g~~l~~~~--~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp---~g~~l~~ 480 (712)
+|+.+.+.. .+.. +++|.+...+.... .+.+|...+..++|+| ++.+|++
T Consensus 144 --------------~g~lv~ss~~g~d~~---------V~~~~~s~dG~~~~--s~~~~~~~v~~l~fs~~~g~~~~LaS 198 (356)
T 2w18_A 144 --------------KRRLVSSSGTLSDQQ---------VEVMTFAEDGGGKE--NQFLMPPEETILTFAEVQGMQEALLG 198 (356)
T ss_dssp --------------TTEEEEEESSSTTCE---------EEEEEECTTSCEEE--EEEECCCSSCEEEEEEEETSTTEEEE
T ss_pred --------------CCcEEEecccCCCCc---------EEEEEECCCCceee--eeccCCCceeeEEeeccCCCCceEEE
Confidence 233333322 1222 56777755443332 3446788888999999 7799999
Q ss_pred EEcCCCCCeEEEEEeecccccCceeEEEEeCCC-----ceeEEEEccCCCeEEEEec---------cCCCceEEEEECCc
Q 005140 481 IHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK-----QANALFWSPSGRFIVLAGL---------KGFNGQLEFYNVDE 546 (712)
Q Consensus 481 ~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-----~v~~l~~spdg~~l~~~~~---------~~~dg~v~iwd~~~ 546 (712)
++.|+ +|+|||+.+++ .+.++.++ .+.+++|||+|+++++++. +..|++|++||..+
T Consensus 199 gS~D~---TIkIWDl~TGk------~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t 269 (356)
T 2w18_A 199 TTIMN---NIVIWNLKTGQ------LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT 269 (356)
T ss_dssp EETTS---EEEEEETTTCC------EEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT
T ss_pred ecCCC---cEEEEECCCCc------EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC
Confidence 99999 99999998765 56666532 3567899999998855321 22389999999998
Q ss_pred ceeeee-------ccccceeeEEECCCCCEEEEEEccceeccccEEEEEec-Cceeeee--ccccee-eeEEecCCCCCC
Q 005140 547 LETMAT-------AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRT--LKDHFF-QFLWRPRPPSFL 615 (712)
Q Consensus 547 ~~~~~~-------~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~--~~~~i~-~~~w~p~~~~l~ 615 (712)
++.+.. +|...+.+..++ |.++|+++. |++|+|||+. |+.+... |.+.+. .++|+|++++|+
T Consensus 270 gk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~-----DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~La 342 (356)
T 2w18_A 270 TLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILT-----SGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLL 342 (356)
T ss_dssp TEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEET-----TSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEE
T ss_pred CEEEEEEEeeccCCCcceeEccccC--CCEEEEEcC-----CCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEE
Confidence 887643 222333333333 778999999 9999999997 5666554 445555 589999999999
Q ss_pred ChhhHHHHH
Q 005140 616 TPEKEEEIA 624 (712)
Q Consensus 616 s~~~d~~i~ 624 (712)
+++.|++||
T Consensus 343 SGS~D~TIk 351 (356)
T 2w18_A 343 AGQKDGNIF 351 (356)
T ss_dssp EECTTSCEE
T ss_pred EEECCCcEE
Confidence 999998775
No 140
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.88 E-value=3.1e-21 Score=203.34 Aligned_cols=307 Identities=10% Similarity=-0.003 Sum_probs=194.3
Q ss_pred EecCCCCCCCcccccCCCcccce-----EEEcCCCcEEEEEec-Cc---eEEeecccCcceeeeec-CCC-eeEEEecCC
Q 005140 196 LWNDARHLKPEPVYKRSYWTESF-----VQWSPLGTYLATVHR-QG---AAVWGGANTFNRLMRYA-HPQ-VKLIDFSPG 264 (712)
Q Consensus 196 ~w~~~~~~~~~~~~~~~~~~v~~-----v~~Spdg~~lat~~~-~~---i~iw~~~~~~~~~~~~~-~~~-v~~i~~Spd 264 (712)
+|-.+..+.....++.|...+.. ++|||||++||+++. ++ +.+|+.. ++....... +.. +..+.||||
T Consensus 13 ~~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~-~g~~~~lt~~~~~~~~~~~~spd 91 (388)
T 3pe7_A 13 TYQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLN-TQVATQLTEGRGDNTFGGFLSPD 91 (388)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETT-TCEEEECCCSSCBCSSSCEECTT
T ss_pred EEecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCC-CCceEEeeeCCCCCccceEEcCC
Confidence 34444556666667766654444 899999999999987 56 6688888 555444333 332 457889999
Q ss_pred CCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec------
Q 005140 265 EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG------ 338 (712)
Q Consensus 265 g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~------ 338 (712)
|++|++++.+ +.|++||+.+++....+..+..... .....+++ ++++++...
T Consensus 92 g~~l~~~~~~----------~~l~~~d~~~g~~~~~~~~~~~~~~-----------~~~~~~~~-dg~~l~~~~~~~~~~ 149 (388)
T 3pe7_A 92 DDALFYVKDG----------RNLMRVDLATLEENVVYQVPAEWVG-----------YGTWVANS-DCTKLVGIEIRREDW 149 (388)
T ss_dssp SSEEEEEETT----------TEEEEEETTTCCEEEEEECCTTEEE-----------EEEEEECT-TSSEEEEEEEEGGGC
T ss_pred CCEEEEEeCC----------CeEEEEECCCCcceeeeechhhccc-----------ccceeECC-CCCeeccccccCccc
Confidence 9999999988 7899999999987665554433220 00234589 999887431
Q ss_pred -----------------CCeEEEEEcCCceecccccccccCeeeEEECC-CCCeEEEEeecCCCCCCCeEEEEEecCCcc
Q 005140 339 -----------------KNMISVYETESFTLIDKKSLKVENVMDFSWSP-TDPIISLFVPELGGGNQPARVSLVQIPSKE 400 (712)
Q Consensus 339 -----------------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp-~~~~la~~~~~~~~~~~~~~i~~~~~~~~~ 400 (712)
+..|.+|++.+++... ...+...+..++||| +|+.|++..... .......||+++.....
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~-~~~~~~~l~~~d~~~~~ 227 (388)
T 3pe7_A 150 VPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGP-HDLVDARMWLINEDGTN 227 (388)
T ss_dssp CCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSC-TTTSSCSEEEEETTSCC
T ss_pred ccccccchhhhhhccCCcceEEEEECCCCceEE-eecCCccccccEECCCCCCEEEEEEecC-CCCCcceEEEEeCCCCc
Confidence 4679999998875432 223334578899999 998888742210 00113344444432111
Q ss_pred ceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCC--CceEEEEEeeCCCEE
Q 005140 401 ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKN--DKIIAFAWEPKGHRF 478 (712)
Q Consensus 401 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~--~~v~~~~~sp~g~~l 478 (712)
. ..+..+. ..+..++|||||+.|
T Consensus 228 -----------------------------------------------------~--~~l~~~~~~~~~~~~~~spdg~~l 252 (388)
T 3pe7_A 228 -----------------------------------------------------M--RKVKTHAEGESCTHEFWVPDGSAL 252 (388)
T ss_dssp -----------------------------------------------------C--EESCCCCTTEEEEEEEECTTSSCE
T ss_pred -----------------------------------------------------e--EEeeeCCCCcccccceECCCCCEE
Confidence 0 1111222 246678999999988
Q ss_pred EEEEcCCCCC--eEEEEEeecccccCceeEEEEeCCC-----ceeEEEEccCCCeEEEEecc------CCCceEEEEECC
Q 005140 479 AVIHGDSPRP--DISFYSMRTAQHAGRVSKLTTLKGK-----QANALFWSPSGRFIVLAGLK------GFNGQLEFYNVD 545 (712)
Q Consensus 479 ~~~~~d~~~~--~v~i~d~~~~~~~~~~~~~~~~~~~-----~v~~l~~spdg~~l~~~~~~------~~dg~v~iwd~~ 545 (712)
++.+...... .|++||+.++.. ..+..+... ....++|||||+.|++.... ..+..|++||+.
T Consensus 253 ~~~~~~~~~~~~~l~~~d~~~g~~----~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~ 328 (388)
T 3pe7_A 253 VYVSYLKGSPDRFIYSADPETLEN----RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMK 328 (388)
T ss_dssp EEEEEETTCCCEEEEEECTTTCCE----EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETT
T ss_pred EEEecCCCCCcceEEEEecCCCce----EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEecc
Confidence 7766532222 399999876542 244444431 12335799999998875321 126789999999
Q ss_pred cceeeeec-ccc-----------ceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 546 ELETMATA-EHF-----------MATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 546 ~~~~~~~~-~~~-----------~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
+++..... +.. .+.+++|||||++|++++.. ++...||.++
T Consensus 329 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~----~g~~~l~~~~ 381 (388)
T 3pe7_A 329 NGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDV----HGKPALYLAT 381 (388)
T ss_dssp TTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT----TSSCEEEEEE
T ss_pred CCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecC----CCceeEEEEE
Confidence 87664432 223 47889999999999988863 5666677654
No 141
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.88 E-value=2e-20 Score=188.61 Aligned_cols=252 Identities=12% Similarity=0.169 Sum_probs=181.2
Q ss_pred cEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCC-ceeccccccc-ccC
Q 005140 285 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETES-FTLIDKKSLK-VEN 362 (712)
Q Consensus 285 ~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~-~~~~~~~~~~-~~~ 362 (712)
+.|++||+.+++..... .+...+. +++|+| +|++|++++++.|.+|++.+ +........+ ...
T Consensus 22 ~~i~~~d~~~~~~~~~~-~~~~~v~-------------~~~~sp-dg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 86 (297)
T 2ojh_A 22 SSIEIFNIRTRKMRVVW-QTPELFE-------------APNWSP-DGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATIC 86 (297)
T ss_dssp EEEEEEETTTTEEEEEE-EESSCCE-------------EEEECT-TSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCB
T ss_pred eeEEEEeCCCCceeeec-cCCcceE-------------eeEECC-CCCEEEEEcCCeEEEEeCCCCCCceEecccccccc
Confidence 89999999888765433 3443332 699999 99999999999999999998 7654333233 245
Q ss_pred eeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEE-Eccccccccccccc
Q 005140 363 VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVK-VDRYTKTKKSTYTG 441 (712)
Q Consensus 363 v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~-~~~~~~~~~~~~~~ 441 (712)
+.+++|+|++++|++... ..++...||.++........... ......+.|+|+|++|++. ..++.
T Consensus 87 ~~~~~~spdg~~l~~~~~---~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~spdg~~l~~~~~~~~~--------- 152 (297)
T 2ojh_A 87 NNDHGISPDGALYAISDK---VEFGKSAIYLLPSTGGTPRLMTK--NLPSYWHGWSPDGKSFTYCGIRDQV--------- 152 (297)
T ss_dssp CSCCEECTTSSEEEEEEC---TTTSSCEEEEEETTCCCCEECCS--SSSEEEEEECTTSSEEEEEEEETTE---------
T ss_pred ccceEECCCCCEEEEEEe---CCCCcceEEEEECCCCceEEeec--CCCccceEECCCCCEEEEEECCCCc---------
Confidence 889999999999998321 13467899999876654222111 1124456899999998854 44433
Q ss_pred EEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEc-CCCCCeEEEEEeecccccCceeEEEEeCC--CceeEE
Q 005140 442 FELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDISFYSMRTAQHAGRVSKLTTLKG--KQANAL 518 (712)
Q Consensus 442 ~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~v~~l 518 (712)
+.+|.++..+... ..+..|...+.+++|+|+|++|++++. ++ .+.+|++..... .+..+.. ..+..+
T Consensus 153 ~~l~~~~~~~~~~--~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~---~~~i~~~~~~~~-----~~~~~~~~~~~~~~~ 222 (297)
T 2ojh_A 153 FDIYSMDIDSGVE--TRLTHGEGRNDGPDYSPDGRWIYFNSSRTG---QMQIWRVRVDGS-----SVERITDSAYGDWFP 222 (297)
T ss_dssp EEEEEEETTTCCE--EECCCSSSCEEEEEECTTSSEEEEEECTTS---SCEEEEEETTSS-----CEEECCCCSEEEEEE
T ss_pred eEEEEEECCCCcc--eEcccCCCccccceECCCCCEEEEEecCCC---CccEEEECCCCC-----CcEEEecCCcccCCe
Confidence 6899887654332 445567888999999999999998875 56 788888863222 2334443 357889
Q ss_pred EEccCCCeEEEEeccC--------CCceEEEEECCccee--eee--ccccceeeEEECCCCCEEEEEEc
Q 005140 519 FWSPSGRFIVLAGLKG--------FNGQLEFYNVDELET--MAT--AEHFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 519 ~~spdg~~l~~~~~~~--------~dg~v~iwd~~~~~~--~~~--~~~~~v~~~~~spdg~~l~t~s~ 575 (712)
+|+|+|++|++++... .++.|++||+.+++. +.. .+...+.+++|+|+|++|++++.
T Consensus 223 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 291 (297)
T 2ojh_A 223 HPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRY 291 (297)
T ss_dssp EECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEE
T ss_pred EECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEe
Confidence 9999999999887621 126799999987655 322 45578899999999999999987
No 142
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.88 E-value=3e-21 Score=221.01 Aligned_cols=339 Identities=10% Similarity=0.095 Sum_probs=202.7
Q ss_pred ceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-CC----CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEE
Q 005140 217 SFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP----QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIF 290 (712)
Q Consensus 217 ~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~----~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iw 290 (712)
..++|||||++++++. ++ +.+|+.. +++....+. +. .+.+++|||||++|++++..... -.....+.|++|
T Consensus 19 ~~~~~s~dg~~~~~~~-d~~i~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~-~~~s~~~~i~~~ 95 (719)
T 1z68_A 19 FFPNWISGQEYLHQSA-DNNIVLYNIE-TGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKL-WRYSYTATYYIY 95 (719)
T ss_dssp CCCEESSSSEEEEECT-TSCEEEEESS-SCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEEC-SSSCEEEEEEEE
T ss_pred CccEECCCCeEEEEcC-CCCEEEEEcC-CCcEEEEEccccccccceeeEEECCCCCeEEEEecCcee-EEeecceEEEEE
Confidence 3689999998777664 55 8999998 665554443 22 38999999999999998761000 000001789999
Q ss_pred EccCCcee--eeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceecccc-cccc-------
Q 005140 291 DVRTGKVM--RDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKK-SLKV------- 360 (712)
Q Consensus 291 d~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~-~~~~------- 360 (712)
|+.+|+.+ ..+. .... .++||| ||++||++.++.|++|++.++...... ..+.
T Consensus 96 d~~~g~~~~~~~l~--~~~~--------------~~~~SP-DG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~ 158 (719)
T 1z68_A 96 DLSNGEFVRGNELP--RPIQ--------------YLCWSP-VGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGI 158 (719)
T ss_dssp ETTTTEECCSSCCC--SSBC--------------CEEECS-STTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESS
T ss_pred ECCCCccccceecC--cccc--------------cceECC-CCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEccc
Confidence 99888763 2222 1111 589999 999999999999999999877643211 0111
Q ss_pred ----------cCeeeEEECCCCCeEEEEeecCC---------------------------CCCCCeEEEEEecCCccce-
Q 005140 361 ----------ENVMDFSWSPTDPIISLFVPELG---------------------------GGNQPARVSLVQIPSKEEL- 402 (712)
Q Consensus 361 ----------~~v~~~~~sp~~~~la~~~~~~~---------------------------~~~~~~~i~~~~~~~~~~~- 402 (712)
....+++|||||+.|++.....+ .......|++|++.+.+..
T Consensus 159 ~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~ 238 (719)
T 1z68_A 159 PDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVG 238 (719)
T ss_dssp CCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHC
T ss_pred ccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccc
Confidence 11258999999999998543210 0112347888888776532
Q ss_pred --eee-----eeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEe--cCCccee-EEE--ecCCCCceE---
Q 005140 403 --RQK-----NLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIK--ERDIPIE-VLE--LDNKNDKII--- 467 (712)
Q Consensus 403 --~~~-----~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~-~~~--l~~h~~~v~--- 467 (712)
... ..+......+.|+|||+.+++...+... ...+.+|++. ....... ... ..+|...+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~-----~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 313 (719)
T 1z68_A 239 PQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQN-----VSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFF 313 (719)
T ss_dssp CEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTT-----EEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSS
T ss_pred eeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccC-----eEEEEEEcccCCCCCCceEEEEecccccCCceEcccc
Confidence 110 0122334567899998766654433210 1123444421 2211111 010 025666666
Q ss_pred --EEEEeeCCCEEEEE-EcCCCCCeEEEEEeecccccCceeEEEEeCC--CceeEEEEccCCCeEEEEecc--CCCceEE
Q 005140 468 --AFAWEPKGHRFAVI-HGDSPRPDISFYSMRTAQHAGRVSKLTTLKG--KQANALFWSPSGRFIVLAGLK--GFNGQLE 540 (712)
Q Consensus 468 --~~~~sp~g~~l~~~-~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~v~~l~~spdg~~l~~~~~~--~~dg~v~ 540 (712)
+++|+|||+.|++. +.......|.+|++.++. ...+.. ..+..+.++ +|+.|++.+.. ..++...
T Consensus 314 ~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-------~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~ 385 (719)
T 1z68_A 314 VSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-------AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRN 385 (719)
T ss_dssp CCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-------CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBE
T ss_pred CCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-------eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEE
Confidence 88999999987764 322223367777775433 122322 246677777 88888887752 1136677
Q ss_pred EEECC--cc----eeeee---ccccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 541 FYNVD--EL----ETMAT---AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 541 iwd~~--~~----~~~~~---~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
+|.+. ++ +.+.. .+...+..+.|||+|++++....... ...+.+|++.
T Consensus 386 l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~--~p~~~l~d~~ 442 (719)
T 1z68_A 386 IYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPG--IPISTLHDGR 442 (719)
T ss_dssp EEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBS--SCEEEEECSS
T ss_pred EEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCC--CCeEEEEECC
Confidence 77664 33 22221 13456778999999998886554200 1346667653
No 143
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=9.1e-20 Score=189.25 Aligned_cols=278 Identities=10% Similarity=0.088 Sum_probs=197.2
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCE
Q 005140 254 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 333 (712)
Q Consensus 254 ~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ 333 (712)
..+..++|||+|++|++++.+... ....+.|.+||..+++.++.+....... .+.|+| +|++
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~---~~~~~~v~~~d~~~~~~~~~~~~~~~~~--------------~~~~s~-dg~~ 102 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRK---LDKGGVVYRLDPVTLEVTQAIHNDLKPF--------------GATINN-TTQT 102 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTT---TEESEEEEEECTTTCCEEEEEEESSCCC--------------SEEEET-TTTE
T ss_pred cCccceEECCCCCEEEEEcCCCcC---CCCCccEEEEcCCCCeEEEEEecCCCcc--------------eEEECC-CCCE
Confidence 358899999999999888754110 0012789999999999888886554433 589999 9996
Q ss_pred EEEec--CCeEEEEEcCCceeccccccccc---------CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccce
Q 005140 334 FAKLG--KNMISVYETESFTLIDKKSLKVE---------NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEEL 402 (712)
Q Consensus 334 la~~~--d~~i~iwd~~~~~~~~~~~~~~~---------~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~ 402 (712)
++.+. ++.|.+||..+++.+.....+.. .+.+++|+|+++.+++ ++......|++|+..+.+.+
T Consensus 103 l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~-----~~~~~~~~i~~~d~~~~~~~ 177 (353)
T 3vgz_A 103 LWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYI-----SGIGKESVIWVVDGGNIKLK 177 (353)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEE-----EEESSSCEEEEEETTTTEEE
T ss_pred EEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEE-----EecCCCceEEEEcCCCCceE
Confidence 65554 79999999998887654433221 2688999999998877 32234567889998877765
Q ss_pred eeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEe--cCCCCceEEEEEeeCCCEEEE
Q 005140 403 RQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL--DNKNDKIIAFAWEPKGHRFAV 480 (712)
Q Consensus 403 ~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l--~~h~~~v~~~~~sp~g~~l~~ 480 (712)
............+.|+|+|+++++...++. +.+|++... .....+.. .++...+.+++|+|+|+++++
T Consensus 178 ~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~---------i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 247 (353)
T 3vgz_A 178 TAIQNTGKMSTGLALDSEGKRLYTTNADGE---------LITIDTADN-KILSRKKLLDDGKEHFFINISLDTARQRAFI 247 (353)
T ss_dssp EEECCCCTTCCCCEEETTTTEEEEECTTSE---------EEEEETTTT-EEEEEEECCCSSSCCCEEEEEEETTTTEEEE
T ss_pred EEecCCCCccceEEECCCCCEEEEEcCCCe---------EEEEECCCC-eEEEEEEcCCCCCCcccceEEECCCCCEEEE
Confidence 554433333556789999999998776543 455554322 12222222 124556888999999998888
Q ss_pred EEcC-CCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeecc-ccce
Q 005140 481 IHGD-SPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE-HFMA 558 (712)
Q Consensus 481 ~~~d-~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~-~~~v 558 (712)
+..+ + .|.+||+.++. .+..+.......++|+|+|+++++++.. ++.|.+||..+++.+.... ...+
T Consensus 248 ~~~~~~---~v~~~d~~~~~------~~~~~~~~~~~~~~~s~dg~~l~v~~~~--~~~v~~~d~~~~~~~~~~~~~~~~ 316 (353)
T 3vgz_A 248 TDSKAA---EVLVVDTRNGN------ILAKVAAPESLAVLFNPARNEAYVTHRQ--AGKVSVIDAKSYKVVKTFDTPTHP 316 (353)
T ss_dssp EESSSS---EEEEEETTTCC------EEEEEECSSCCCEEEETTTTEEEEEETT--TTEEEEEETTTTEEEEEEECCSEE
T ss_pred EeCCCC---EEEEEECCCCc------EEEEEEcCCCceEEECCCCCEEEEEECC--CCeEEEEECCCCeEEEEEecCCCC
Confidence 8765 4 89999997654 3444443334679999999987776531 7999999999888876533 3567
Q ss_pred eeEEECCCCCEEEEEEc
Q 005140 559 TDVEWDPTGRYVATAVT 575 (712)
Q Consensus 559 ~~~~~spdg~~l~t~s~ 575 (712)
.+++|+|+|++|+++..
T Consensus 317 ~~~~~s~dg~~l~v~~~ 333 (353)
T 3vgz_A 317 NSLALSADGKTLYVSVK 333 (353)
T ss_dssp EEEEECTTSCEEEEEEE
T ss_pred CeEEEcCCCCEEEEEEc
Confidence 89999999998877766
No 144
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.87 E-value=3.6e-20 Score=212.01 Aligned_cols=339 Identities=8% Similarity=-0.003 Sum_probs=211.9
Q ss_pred CCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCc---ccceEEEcCCCcEEEEEec---------Cc-eEEeecccC
Q 005140 178 DEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYW---TESFVQWSPLGTYLATVHR---------QG-AAVWGGANT 244 (712)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~---~v~~v~~Spdg~~lat~~~---------~~-i~iw~~~~~ 244 (712)
.|++ +++....++.+.+|+. ..+.....+.+|.. .+.+++|||||++||+++. ++ +.+||+. +
T Consensus 24 s~dg--~~~~~~~d~~i~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~-~ 99 (719)
T 1z68_A 24 ISGQ--EYLHQSADNNIVLYNI-ETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS-N 99 (719)
T ss_dssp SSSS--EEEEECTTSCEEEEES-SSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT-T
T ss_pred CCCC--eEEEEcCCCCEEEEEc-CCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC-C
Confidence 3555 5777777889999998 44554444444433 3899999999999999876 45 8899998 5
Q ss_pred ccee--eeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCC-CcccccCCCCCc-----
Q 005140 245 FNRL--MRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGS-ADEFAVGGTGGV----- 316 (712)
Q Consensus 245 ~~~~--~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~-~~~~~~~~~~~~----- 316 (712)
++.+ ..+ ...+.+++|||||++||++. + +.|++|++.+++..+..... ...+..+....+
T Consensus 100 g~~~~~~~l-~~~~~~~~~SPDG~~la~~~-~----------~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~ 167 (719)
T 1z68_A 100 GEFVRGNEL-PRPIQYLCWSPVGSKLAYVY-Q----------NNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEM 167 (719)
T ss_dssp TEECCSSCC-CSSBCCEEECSSTTCEEEEE-T----------TEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHT
T ss_pred Cccccceec-CcccccceECCCCCEEEEEE-C----------CeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeec
Confidence 5542 222 24589999999999999986 4 58999999888765533222 111100000000
Q ss_pred CCCCcCeEEecCCCCCEEEEec-CC----------------------------------eEEEEEcCCceec---c----
Q 005140 317 AGVSWPVFRWGGGKDKYFAKLG-KN----------------------------------MISVYETESFTLI---D---- 354 (712)
Q Consensus 317 ~~~~~~~~~~s~~dg~~la~~~-d~----------------------------------~i~iwd~~~~~~~---~---- 354 (712)
.+. ...++||| ||++||+++ +. .|.+||+.++... .
T Consensus 168 ~~~-~~~~~wSP-DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~ 245 (719)
T 1z68_A 168 LAT-KYALWWSP-NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVP 245 (719)
T ss_dssp TCS-SCCEEECT-TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCC
T ss_pred ccC-cccEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCC
Confidence 000 01589999 999999887 42 7889999877642 1
Q ss_pred -cccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEe----cCCccceeee----eeeeecce-----eEEECcC
Q 005140 355 -KKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQ----IPSKEELRQK----NLFSVSDC-----KMYWQSS 420 (712)
Q Consensus 355 -~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~----~~~~~~~~-----~~~~s~~ 420 (712)
....+...+..++||||++++++.. .. .+....|++++ ..+.+..... ..+..... .+.|+|+
T Consensus 246 ~~~~~~~~~~~~~~~SpD~~~~~~~~-~~--~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spd 322 (719)
T 1z68_A 246 AMIASSDYYFSWLTWVTDERVCLQWL-KR--VQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYD 322 (719)
T ss_dssp HHHHTSCEEEEEEEESSSSEEEEEEE-ES--STTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTT
T ss_pred ccCCCCcceEEEeEEeCCCeEEEEEe-cc--ccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCC
Confidence 1112344588999999977655522 12 34557899998 6555432222 11111111 5689999
Q ss_pred CCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcC--CCCCeEEEEEeecc
Q 005140 421 GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGD--SPRPDISFYSMRTA 498 (712)
Q Consensus 421 g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d--~~~~~v~i~d~~~~ 498 (712)
|+.+++...+.. +...||.++..+.. ...+..+...+..+.++ +++.+++.+.+ ......++|.+...
T Consensus 323 g~~l~~~~~~~~-------g~~~l~~~~~~~~~--~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~ 392 (719)
T 1z68_A 323 AISYYKIFSDKD-------GYKHIHYIKDTVEN--AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIG 392 (719)
T ss_dssp SSCEEEEEECTT-------SCEEEEEESSCSTT--CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECS
T ss_pred CCeEEEEEEccC-------CceEEEEEECCCCc--eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCC
Confidence 998776433221 11345555543332 24455556678888877 99999988876 11116788887642
Q ss_pred cccCceeEEEEeC------CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceee
Q 005140 499 QHAGRVSKLTTLK------GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETM 550 (712)
Q Consensus 499 ~~~~~~~~~~~~~------~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~ 550 (712)
.+... ...+. ...+..+.|||+|++++..+.+.....+.+||+.+++.+
T Consensus 393 ~g~~~---~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~ 447 (719)
T 1z68_A 393 SYPPS---KKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEI 447 (719)
T ss_dssp SSSCC---EEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEE
T ss_pred CCCCC---ceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEE
Confidence 21100 12222 124678999999998887554332357889998776643
No 145
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=5e-20 Score=189.73 Aligned_cols=281 Identities=12% Similarity=0.107 Sum_probs=192.1
Q ss_pred cEEEEEecCc-eEEeecccCcceeeeecCC----CeeEEEecCCCCEEEEE-cCCCCCCCcCCCccEEEEEEccCCceee
Q 005140 226 TYLATVHRQG-AAVWGGANTFNRLMRYAHP----QVKLIDFSPGEKYLVTY-SSHEPSNPRDANRVVINIFDVRTGKVMR 299 (712)
Q Consensus 226 ~~lat~~~~~-i~iw~~~~~~~~~~~~~~~----~v~~i~~Spdg~~l~t~-s~d~~~~~~~~~~~~I~iwd~~~g~~~~ 299 (712)
++|++++.++ |.+||.. +++.+..+... .+..++|||+|++|+++ ..+ +.|.+||+.+++.+.
T Consensus 2 ~~~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~----------~~v~~~d~~~~~~~~ 70 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTE-KMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKS----------ESLVKIDLVTGETLG 70 (337)
T ss_dssp EEEEEEETTTEEEEEETT-TTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTT----------TEEEEEETTTCCEEE
T ss_pred cEEEEcCCCCeEEEEECC-CCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCC----------CeEEEEECCCCCeEe
Confidence 5788888888 8899998 77777766533 48899999999877544 445 789999999999887
Q ss_pred eccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-------------CCeEEEEEcCCceecccccccccCeeeE
Q 005140 300 DFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-------------KNMISVYETESFTLIDKKSLKVENVMDF 366 (712)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-------------d~~i~iwd~~~~~~~~~~~~~~~~v~~~ 366 (712)
.+........ ...+ . .++|+| +|++++++. ++.|.+|++.+++.+..... ...+.++
T Consensus 71 ~~~~~~~~~~---~~~~----~-~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~ 140 (337)
T 1pby_B 71 RIDLSTPEER---VKSL----F-GAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML 140 (337)
T ss_dssp EEECCBTTEE---EECT----T-CEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred eEEcCCcccc---cccc----c-ceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence 7764320000 0000 1 589999 999888773 68999999998876644322 3357889
Q ss_pred EECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccc-----------
Q 005140 367 SWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTK----------- 435 (712)
Q Consensus 367 ~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~----------- 435 (712)
+|+|++++|++ + + ..|++|+..+.+.+....... ....+.|+|+|.++++.........
T Consensus 141 ~~s~dg~~l~~-----~--~--~~i~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~ 210 (337)
T 1pby_B 141 AWARDGSKLYG-----L--G--RDLHVMDPEAGTLVEDKPIQS-WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDID 210 (337)
T ss_dssp EECTTSSCEEE-----E--S--SSEEEEETTTTEEEEEECSTT-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSC
T ss_pred EECCCCCEEEE-----e--C--CeEEEEECCCCcEeeeeeccc-cCCCceeCCCccEEeeeccCCCceeeeeeccccccc
Confidence 99999999887 3 2 347778887766544332221 0123368999987765443221000
Q ss_pred ----ccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC
Q 005140 436 ----KSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK 511 (712)
Q Consensus 436 ----~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~ 511 (712)
......+.+|++.. .....+.+..+...+.+++|+|+|++++++ ++ .|.+||+.++. .+..+.
T Consensus 211 ~~~~~~~~~~v~~~d~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~---~v~~~d~~~~~------~~~~~~ 277 (337)
T 1pby_B 211 PADPTAYRTGLLTMDLET--GEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YN---VLESFDLEKNA------SIKRVP 277 (337)
T ss_dssp TTSGGGEEEEEEEEETTT--CCEEEEEEEECSSCEEEEEECTTSSEEEEE--ES---EEEEEETTTTE------EEEEEE
T ss_pred cccccccccceEEEeCCC--CCceEeecCCCCCceeeEEECCCCCEEEEe--CC---eEEEEECCCCc------Ccceec
Confidence 00000234444433 222245555667788899999999999988 45 89999997644 333333
Q ss_pred -CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeec
Q 005140 512 -GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATA 553 (712)
Q Consensus 512 -~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~ 553 (712)
+..+.+++|+|+|++|++++. ++.|.+||+.+++.+...
T Consensus 278 ~~~~~~~~~~s~dg~~l~~~~~---~~~i~v~d~~~~~~~~~~ 317 (337)
T 1pby_B 278 LPHSYYSVNVSTDGSTVWLGGA---LGDLAAYDAETLEKKGQV 317 (337)
T ss_dssp CSSCCCEEEECTTSCEEEEESB---SSEEEEEETTTCCEEEEE
T ss_pred CCCceeeEEECCCCCEEEEEcC---CCcEEEEECcCCcEEEEE
Confidence 346789999999999999876 899999999988877653
No 146
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.87 E-value=1.8e-19 Score=186.10 Aligned_cols=295 Identities=9% Similarity=0.037 Sum_probs=187.9
Q ss_pred EEEEECCeeEEEecCCCCCCC-cccccCCCcccceEEEcCCCcEEEEEecC-c-eEEeecc--c-Ccceeeeec-CCCee
Q 005140 185 FVIRSGTDTEVLWNDARHLKP-EPVYKRSYWTESFVQWSPLGTYLATVHRQ-G-AAVWGGA--N-TFNRLMRYA-HPQVK 257 (712)
Q Consensus 185 ~~~~~~~~~~~~w~~~~~~~~-~~~~~~~~~~v~~v~~Spdg~~lat~~~~-~-i~iw~~~--~-~~~~~~~~~-~~~v~ 257 (712)
|+....++.+.+|+....+.. ......|...+.+++|||+|++|++++.+ + +.+|++. + ....+..+. +..+.
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT 87 (343)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS
T ss_pred EEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCc
Confidence 334456788889988432221 12223466778999999999999998886 5 8899986 1 223344443 23689
Q ss_pred EEEecCCCCEEEEEcC-CCCCCCcCCCccEEEEEEc---cCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCE
Q 005140 258 LIDFSPGEKYLVTYSS-HEPSNPRDANRVVINIFDV---RTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 333 (712)
Q Consensus 258 ~i~~Spdg~~l~t~s~-d~~~~~~~~~~~~I~iwd~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ 333 (712)
.++|+|+|++|++++. + +.|.+||+ .+++.+..+..+.... .++|+| ++++
T Consensus 88 ~~~~s~dg~~l~~~~~~~----------~~i~~~d~~~~~~~~~~~~~~~~~~~~--------------~~~~s~-dg~~ 142 (343)
T 1ri6_A 88 HISTDHQGQFVFVGSYNA----------GNVSVTRLEDGLPVGVVDVVEGLDGCH--------------SANISP-DNRT 142 (343)
T ss_dssp EEEECTTSSEEEEEETTT----------TEEEEEEEETTEEEEEEEEECCCTTBC--------------CCEECT-TSSE
T ss_pred EEEEcCCCCEEEEEecCC----------CeEEEEECCCCccccccccccCCCCce--------------EEEECC-CCCE
Confidence 9999999998877665 5 78999999 4444555555443322 589999 9997
Q ss_pred EEEec--CCeEEEEEcCC-ceeccc----ccc-cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecC--Cccc--
Q 005140 334 FAKLG--KNMISVYETES-FTLIDK----KSL-KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIP--SKEE-- 401 (712)
Q Consensus 334 la~~~--d~~i~iwd~~~-~~~~~~----~~~-~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~--~~~~-- 401 (712)
+++++ ++.|.+|++.+ +..... ... ....+..++|+|++++|++. +..++ .|.+|++. +...
T Consensus 143 l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~----~~~~~--~i~~~~~~~~~g~~~~ 216 (343)
T 1ri6_A 143 LWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCV----NELNS--SVDVWELKDPHGNIEC 216 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEE----ETTTT--EEEEEESSCTTSCCEE
T ss_pred EEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEE----eCCCC--EEEEEEecCCCCcEEE
Confidence 77665 89999999986 543321 112 12357889999999977652 22344 45555553 2222
Q ss_pred eeeeeee------eecceeEEECcCCCEEEEEEc-ccccccccccccEEEEEEecCCcceeEE-EecCCCCceEEEEEee
Q 005140 402 LRQKNLF------SVSDCKMYWQSSGDYLAVKVD-RYTKTKKSTYTGFELFRIKERDIPIEVL-ELDNKNDKIIAFAWEP 473 (712)
Q Consensus 402 ~~~~~~~------~~~~~~~~~s~~g~~l~~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~l~~h~~~v~~~~~sp 473 (712)
....... ......+.|+|+|++|++... ++. +.+|++...+.....+ .+..+ ..+.+++|+|
T Consensus 217 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~---------i~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~s~ 286 (343)
T 1ri6_A 217 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASL---------ITVFSVSEDGSVLSKEGFQPTE-TQPRGFNVDH 286 (343)
T ss_dssp EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTE---------EEEEEECTTSCCEEEEEEEECS-SSCCCEEECT
T ss_pred EeeccccCccccccCCccceEECCCCCEEEEEecCCCE---------EEEEEEcCCCCceEEeeeecCC-CccceEEECC
Confidence 1111100 112235789999999886653 333 7899987432222222 23233 3488999999
Q ss_pred CCCEEEEEEc-CCCCCeEEEEEeecccccCceeEEEEeCC-CceeEEEEccCCC
Q 005140 474 KGHRFAVIHG-DSPRPDISFYSMRTAQHAGRVSKLTTLKG-KQANALFWSPSGR 525 (712)
Q Consensus 474 ~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~~~-~~v~~l~~spdg~ 525 (712)
+|++|++++. ++ .|.+|+++...+ ....+..+.. ....+++|.|+-+
T Consensus 287 dg~~l~~~~~~~~---~v~v~~~d~~~g--~~~~~~~~~~g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 287 SGKYLIAAGQKSH---HISVYEIVGEQG--LLHEKGRYAVGQGPMWVVVNAHEG 335 (343)
T ss_dssp TSSEEEEECTTTC---EEEEEEEETTTT--EEEEEEEEECSSSCCEEEEEEEC-
T ss_pred CCCEEEEecCCCC---eEEEEEEcCCCc--eeeEccccccCCCCeeEEEEcccC
Confidence 9999998885 56 899997764322 1334555543 3467777777543
No 147
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.87 E-value=7.1e-20 Score=209.66 Aligned_cols=358 Identities=8% Similarity=0.066 Sum_probs=209.0
Q ss_pred ccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec-CC----Ce--eEEEecCCCCEEEEEcCCCCCCCcCCCccE
Q 005140 215 TESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA-HP----QV--KLIDFSPGEKYLVTYSSHEPSNPRDANRVV 286 (712)
Q Consensus 215 ~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~-~~----~v--~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~ 286 (712)
...+++|+|||++|+++ ++ |.+|+.. ++.....+. |. .+ ..++|||||++|++++.+... -+....+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~-~r~~~~~~ 93 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAE-YGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQ-WRHSYTAS 93 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETT-TCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEEC-SSSCEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECC-CCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeee-EEEccceE
Confidence 35579999999999997 55 8999998 555444332 21 13 448999999999998875110 00111256
Q ss_pred EEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceeccccc-ccc-----
Q 005140 287 INIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKS-LKV----- 360 (712)
Q Consensus 287 I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~-~~~----- 360 (712)
+.+||+.+|+..+ +..+..... .++||| ||+.||++.++.|.+|++.++....... .+.
T Consensus 94 ~~~~d~~~~~~~~-l~~~~~~~~-------------~~~~SP-dG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~ 158 (740)
T 4a5s_A 94 YDIYDLNKRQLIT-EERIPNNTQ-------------WVTWSP-VGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYN 158 (740)
T ss_dssp EEEEETTTTEECC-SSCCCTTEE-------------EEEECS-STTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEE
T ss_pred EEEEECCCCcEEE-cccCCCcce-------------eeEECC-CCCEEEEEECCeEEEEECCCCceEEEcCCCCccceec
Confidence 7899998887544 444433321 689999 9999999999999999998776432110 111
Q ss_pred ------------cCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEE
Q 005140 361 ------------ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKV 428 (712)
Q Consensus 361 ------------~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~ 428 (712)
.....+.|||||+.|++.... +..+.+|.+....... ........+.+.+.|....
T Consensus 159 g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d----~~~v~~~~~~~~~~~~-----~~~~~~~~~~yp~~G~~~~--- 226 (740)
T 4a5s_A 159 GITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN----DTEVPLIEYSFYSDES-----LQYPKTVRVPYPKAGAVNP--- 226 (740)
T ss_dssp SBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE----CTTCCEEEEEECCSTT-----CSSCEEEEEECCBTTSCCC---
T ss_pred CcccccccchhcCCCcceEECCCCCEEEEEEEc----ccCCceEEEEeecCCC-----CCCCcceeecCCCCcCcCC---
Confidence 112358999999999984322 2234444443222110 0011112234444443200
Q ss_pred cccccccccccccEEEEEEec---CCcceeEEEec------CCCCceEEEEEeeCCCEEEEEEcC-CCCCeEEEEEeecc
Q 005140 429 DRYTKTKKSTYTGFELFRIKE---RDIPIEVLELD------NKNDKIIAFAWEPKGHRFAVIHGD-SPRPDISFYSMRTA 498 (712)
Q Consensus 429 ~~~~~~~~~~~~~~~l~~l~~---~~~~~~~~~l~------~h~~~v~~~~~sp~g~~l~~~~~d-~~~~~v~i~d~~~~ 498 (712)
...+.+|++.. ... .....+. +|...+..++|||||+.++..... +....|.+||+.++
T Consensus 227 ----------~~~l~v~d~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg 295 (740)
T 4a5s_A 227 ----------TVKFFVVNTDSLSSVTN-ATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDES 295 (740)
T ss_dssp ----------EEEEEEEETTSCCSSSC-CCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETT
T ss_pred ----------eeEEEEEECCCCCCCCc-ceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCC
Confidence 01245555543 211 1122332 377789999999999977766543 22236899999876
Q ss_pred cc----cCceeEEEEeCCCce-----eEEEEccCCCeEE-EEeccCCCceEEEEECCcceeeee-ccccceeeEEECCCC
Q 005140 499 QH----AGRVSKLTTLKGKQA-----NALFWSPSGRFIV-LAGLKGFNGQLEFYNVDELETMAT-AEHFMATDVEWDPTG 567 (712)
Q Consensus 499 ~~----~~~~~~~~~~~~~~v-----~~l~~spdg~~l~-~~~~~~~dg~v~iwd~~~~~~~~~-~~~~~v~~~~~spdg 567 (712)
.. ......+..-....+ ..++|||||+.|+ ..+..+....|++||+.+++.... .....+..+. ++||
T Consensus 296 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~-~~d~ 374 (740)
T 4a5s_A 296 SGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIE-ALTS 374 (740)
T ss_dssp TTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEE-EECS
T ss_pred ccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEE-EEeC
Confidence 51 000112222223333 3789999999887 665433346799999987665443 2234455543 2448
Q ss_pred CEEEEEEcc--ceeccccEEEEEecCceee-eec------ccceeeeEEecCCCCCC
Q 005140 568 RYVATAVTS--VHEMENGFNIWSFNGKLLY-RTL------KDHFFQFLWRPRPPSFL 615 (712)
Q Consensus 568 ~~l~t~s~~--~~~~d~~v~iw~~~g~~~~-~~~------~~~i~~~~w~p~~~~l~ 615 (712)
+.|+..+.. .......++..++.|.... ... ......+.|+|++++++
T Consensus 375 ~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~ 431 (740)
T 4a5s_A 375 DYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQ 431 (740)
T ss_dssp SEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEE
T ss_pred CEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEE
Confidence 877777661 0001134444455554322 111 24678899999998655
No 148
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.86 E-value=1.8e-19 Score=185.37 Aligned_cols=281 Identities=7% Similarity=0.048 Sum_probs=181.3
Q ss_pred cCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEec-Cc-eEEeecccCcce-eeeec-
Q 005140 177 TDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHR-QG-AAVWGGANTFNR-LMRYA- 252 (712)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~-~~-i~iw~~~~~~~~-~~~~~- 252 (712)
+++.+...|+....++.+.+|+. ..++....+..+.... +++|||+|++|++++. ++ +.+||.. +... ...+.
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~-~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~-~~~~~~~~~~~ 81 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFST-DTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQ-LEPPKVVAIQE 81 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEET-TTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECS-SSSCEEEEEEE
T ss_pred EcCCCCEEEEEecCCCeEEEEeC-cccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECC-CCceeEEeccc
Confidence 44555656777777888889998 4555555555555566 9999999998777766 44 8899998 5554 44443
Q ss_pred CCCeeE-EEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCC
Q 005140 253 HPQVKL-IDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 331 (712)
Q Consensus 253 ~~~v~~-i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg 331 (712)
+..... ++|+|+|++|+++..+ +..+.|.+||+.+++.+..+..+.... .++|+| +|
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~-------~~~~~i~v~d~~~~~~~~~~~~~~~~~--------------~~~~sp-dg 139 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGL-------NHPFNMQSYSFLKNKFISTIPIPYDAV--------------GIAISP-NG 139 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCS-------SSSCEEEEEETTTTEEEEEEECCTTEE--------------EEEECT-TS
T ss_pred CCCCccceEECCCCCEEEEecCC-------CCcccEEEEECCCCCeEEEEECCCCcc--------------ceEECC-CC
Confidence 344555 9999999999944333 000289999999999888876654443 689999 99
Q ss_pred CEEEEec--CCe-EEEEEcCCceeccc----ccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceee
Q 005140 332 KYFAKLG--KNM-ISVYETESFTLIDK----KSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ 404 (712)
Q Consensus 332 ~~la~~~--d~~-i~iwd~~~~~~~~~----~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (712)
++++++. ++. |.+|++.....+.. ..........++|+|+|+++++. +.. ...|.+|++.+.+.+.
T Consensus 140 ~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~----~~~--~~~v~v~d~~~~~~~~- 212 (331)
T 3u4y_A 140 NGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVA----NLI--GNSIGILETQNPENIT- 212 (331)
T ss_dssp SCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEE----ETT--TTEEEEEECSSTTSCE-
T ss_pred CEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEE----eCC--CCeEEEEECCCCcccc-
Confidence 8666554 577 99999875332211 11122346778888888766542 112 2234444443222100
Q ss_pred eeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEc-
Q 005140 405 KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG- 483 (712)
Q Consensus 405 ~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~- 483 (712)
. . ..+. +...+..++|+|+|++++++..
T Consensus 213 --------------------------------------~----------~--~~~~-~~~~~~~~~~spdg~~l~v~~~~ 241 (331)
T 3u4y_A 213 --------------------------------------L----------L--NAVG-TNNLPGTIVVSRDGSTVYVLTES 241 (331)
T ss_dssp --------------------------------------E----------E--EEEE-CSSCCCCEEECTTSSEEEEECSS
T ss_pred --------------------------------------e----------e--eecc-CCCCCceEEECCCCCEEEEEEcC
Confidence 0 0 1111 1355677899999998877665
Q ss_pred CCCCCeEEEEEeecccccCceeEEEEeCC------Cc---eeEEEEccCCCeEEEEeccCCCceEEEEECCccee
Q 005140 484 DSPRPDISFYSMRTAQHAGRVSKLTTLKG------KQ---ANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET 549 (712)
Q Consensus 484 d~~~~~v~i~d~~~~~~~~~~~~~~~~~~------~~---v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~ 549 (712)
++ .|.+||+.++.. ..+..+.. .+ .+.++|+|+|++|++++.. ++.|.+||+.+...
T Consensus 242 ~~---~i~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~--~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 242 TV---DVFNFNQLSGTL----SFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANI--SRELKVFTISGKVV 307 (331)
T ss_dssp EE---EEEEEETTTTEE----EEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETT--TTEEEEEETTSCEE
T ss_pred CC---EEEEEECCCCce----eeecccccccccCCCCcccccceEECCCCCEEEEecCC--CCcEEEEEecCCcc
Confidence 34 799999876542 12333221 11 2558999999998777641 67999999986544
No 149
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.86 E-value=1.1e-18 Score=180.20 Aligned_cols=289 Identities=10% Similarity=0.089 Sum_probs=181.4
Q ss_pred cEEEEEEcc-CCc--eeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-C-CeEEEEEcC--Cceec--cc
Q 005140 285 VVINIFDVR-TGK--VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-K-NMISVYETE--SFTLI--DK 355 (712)
Q Consensus 285 ~~I~iwd~~-~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d-~~i~iwd~~--~~~~~--~~ 355 (712)
+.|++|++. ++. .+..+....... .++|+| +|++|++++ + +.|.+|++. ++... ..
T Consensus 15 ~~v~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~sp-dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~ 79 (343)
T 1ri6_A 15 QQIHVWNLNHEGALTLTQVVDVPGQVQ--------------PMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAE 79 (343)
T ss_dssp TEEEEEEECTTSCEEEEEEEECSSCCC--------------CEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred CeEEEEEECCCCcEEEeeeEecCCCCc--------------eEEECC-CCCEEEEeecCCCeEEEEEecCCCCceeeccc
Confidence 899999985 343 333333222221 589999 999888877 4 999999997 44432 22
Q ss_pred ccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEec-CCccceeeeeeeeecceeEEECcCCCEEEEEE-ccccc
Q 005140 356 KSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQI-PSKEELRQKNLFSVSDCKMYWQSSGDYLAVKV-DRYTK 433 (712)
Q Consensus 356 ~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~-~~~~~ 433 (712)
... ...+..++|+|++++|++. +..++.+.+|..+. .....+.... .......+.|+|+|++++++. .++.
T Consensus 80 ~~~-~~~~~~~~~s~dg~~l~~~----~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~- 152 (343)
T 1ri6_A 80 SAL-PGSLTHISTDHQGQFVFVG----SYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPALKQDR- 152 (343)
T ss_dssp EEC-SSCCSEEEECTTSSEEEEE----ETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEEGGGTE-
T ss_pred ccc-CCCCcEEEEcCCCCEEEEE----ecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEecCCCCE-
Confidence 212 2368899999999988762 22344444444430 1112222211 122345578999999998876 4443
Q ss_pred ccccccccEEEEEEecCCcceeEE--Eec-CCCCceEEEEEeeCCCEEEEEE-cCCCCCeEEEEEeecccccCc-eeEEE
Q 005140 434 TKKSTYTGFELFRIKERDIPIEVL--ELD-NKNDKIIAFAWEPKGHRFAVIH-GDSPRPDISFYSMRTAQHAGR-VSKLT 508 (712)
Q Consensus 434 ~~~~~~~~~~l~~l~~~~~~~~~~--~l~-~h~~~v~~~~~sp~g~~l~~~~-~d~~~~~v~i~d~~~~~~~~~-~~~~~ 508 (712)
+.+|++...+...... .+. .....+.+++|+|+|+++++++ .++ .|.+|++....+... ...+.
T Consensus 153 --------v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~---~i~~~~~~~~~g~~~~~~~~~ 221 (343)
T 1ri6_A 153 --------ICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNS---SVDVWELKDPHGNIECVQTLD 221 (343)
T ss_dssp --------EEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTT---EEEEEESSCTTSCCEEEEEEE
T ss_pred --------EEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCC---EEEEEEecCCCCcEEEEeecc
Confidence 7889887533322211 222 2345788999999999888777 455 899999964222111 11222
Q ss_pred EeCCC-----ceeEEEEccCCCeEEEEeccCCCceEEEEECC--c--ceeeeec-cccceeeEEECCCCCEEEEEEccce
Q 005140 509 TLKGK-----QANALFWSPSGRFIVLAGLKGFNGQLEFYNVD--E--LETMATA-EHFMATDVEWDPTGRYVATAVTSVH 578 (712)
Q Consensus 509 ~~~~~-----~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~--~--~~~~~~~-~~~~v~~~~~spdg~~l~t~s~~~~ 578 (712)
.+... .+..++|+|+|++|+++.. .++.|.+|++. + .+.+... ....+.+++|+|+|++|++++..
T Consensus 222 ~~~~~~~~~~~~~~i~~s~dg~~l~v~~~--~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-- 297 (343)
T 1ri6_A 222 MMPENFSDTRWAADIHITPDGRHLYACDR--TASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQK-- 297 (343)
T ss_dssp CSCTTCCSCCCEEEEEECTTSSEEEEEET--TTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTT--
T ss_pred ccCccccccCCccceEECCCCCEEEEEec--CCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCC--
Confidence 22221 3557999999998886552 18999999998 2 3344332 23448899999999999988842
Q ss_pred eccccEEEEEec---Cce--eeeecc-cceeeeEEecCCC
Q 005140 579 EMENGFNIWSFN---GKL--LYRTLK-DHFFQFLWRPRPP 612 (712)
Q Consensus 579 ~~d~~v~iw~~~---g~~--~~~~~~-~~i~~~~w~p~~~ 612 (712)
++.+.+|+++ |.+ +..... .....++|.|+.+
T Consensus 298 --~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 298 --SHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAHEG 335 (343)
T ss_dssp --TCEEEEEEEETTTTEEEEEEEEECSSSCCEEEEEEEC-
T ss_pred --CCeEEEEEEcCCCceeeEccccccCCCCeeEEEEcccC
Confidence 7999999775 322 222222 4677888888754
No 150
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.85 E-value=1.5e-19 Score=182.03 Aligned_cols=253 Identities=14% Similarity=0.122 Sum_probs=176.6
Q ss_pred cCc-eEEeecccCcceeeeecCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC-CceeeeccCCCcccc
Q 005140 233 RQG-AAVWGGANTFNRLMRYAHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT-GKVMRDFKGSADEFA 309 (712)
Q Consensus 233 ~~~-i~iw~~~~~~~~~~~~~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~-g~~~~~~~~~~~~~~ 309 (712)
.++ |.+|+.. +.+......|. .|.+++|||+|++|++++ + +.|++||+.+ ++....+..+....
T Consensus 20 ~~~~i~~~d~~-~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~----------~~i~~~d~~~~~~~~~~~~~~~~~~- 86 (297)
T 2ojh_A 20 MRSSIEIFNIR-TRKMRVVWQTPELFEAPNWSPDGKYLLLNS-E----------GLLYRLSLAGDPSPEKVDTGFATIC- 86 (297)
T ss_dssp CCEEEEEEETT-TTEEEEEEEESSCCEEEEECTTSSEEEEEE-T----------TEEEEEESSSCCSCEECCCTTCCCB-
T ss_pred cceeEEEEeCC-CCceeeeccCCcceEeeEECCCCCEEEEEc-C----------CeEEEEeCCCCCCceEecccccccc-
Confidence 445 8899998 66655555555 499999999999999987 5 6899999988 87776665553211
Q ss_pred cCCCCCcCCCCcCeEEecCCCCCEEEEec---CCeEEEE--EcCCceecccccccccCeeeEEECCCCCeEEEEeecCCC
Q 005140 310 VGGTGGVAGVSWPVFRWGGGKDKYFAKLG---KNMISVY--ETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGG 384 (712)
Q Consensus 310 ~~~~~~~~~~~~~~~~~s~~dg~~la~~~---d~~i~iw--d~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~ 384 (712)
..+++|+| ++++|+++. ++...|| ++.++... .. .....+..++|+|+++.|++. ++
T Consensus 87 -----------~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~~~~~~-~~-~~~~~~~~~~~spdg~~l~~~----~~ 148 (297)
T 2ojh_A 87 -----------NNDHGISP-DGALYAISDKVEFGKSAIYLLPSTGGTPR-LM-TKNLPSYWHGWSPDGKSFTYC----GI 148 (297)
T ss_dssp -----------CSCCEECT-TSSEEEEEECTTTSSCEEEEEETTCCCCE-EC-CSSSSEEEEEECTTSSEEEEE----EE
T ss_pred -----------ccceEECC-CCCEEEEEEeCCCCcceEEEEECCCCceE-Ee-ecCCCccceEECCCCCEEEEE----EC
Confidence 11589999 999999887 2345555 44444321 11 223348889999999988853 33
Q ss_pred CCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEc-ccccccccccccEEEEEEecCCcceeEEEecCCC
Q 005140 385 GNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVD-RYTKTKKSTYTGFELFRIKERDIPIEVLELDNKN 463 (712)
Q Consensus 385 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~ 463 (712)
.++..+||.++........ ..........+.|+|+|++|++... ++. ..+|.+...+... ..+..|.
T Consensus 149 ~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~s~dg~~l~~~~~~~~~---------~~i~~~~~~~~~~--~~~~~~~ 216 (297)
T 2ojh_A 149 RDQVFDIYSMDIDSGVETR-LTHGEGRNDGPDYSPDGRWIYFNSSRTGQ---------MQIWRVRVDGSSV--ERITDSA 216 (297)
T ss_dssp ETTEEEEEEEETTTCCEEE-CCCSSSCEEEEEECTTSSEEEEEECTTSS---------CEEEEEETTSSCE--EECCCCS
T ss_pred CCCceEEEEEECCCCcceE-cccCCCccccceECCCCCEEEEEecCCCC---------ccEEEECCCCCCc--EEEecCC
Confidence 5566788888876544322 2222334456789999999988764 433 6899987544333 4455677
Q ss_pred CceEEEEEeeCCCEEEEEEcCCC--------CCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEec
Q 005140 464 DKIIAFAWEPKGHRFAVIHGDSP--------RPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGL 532 (712)
Q Consensus 464 ~~v~~~~~sp~g~~l~~~~~d~~--------~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~ 532 (712)
..+.+++|+|+|++|++++.++. ...|.+|++.++.. ..+..+. ...+.+++|+|+|++|++++.
T Consensus 217 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~----~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 291 (297)
T 2ojh_A 217 YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV----ETLFDLFGGQGTMNSPNWSPDGDEFAYVRY 291 (297)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC----EEEEEEEESTTTSCSCCBCTTSSEEEEEEE
T ss_pred cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc----eeeeccCCCCcccccceECCCCCEEEEEEe
Confidence 88999999999999999887531 12699999876542 2444432 346889999999999998876
No 151
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.84 E-value=8.8e-20 Score=192.64 Aligned_cols=325 Identities=11% Similarity=0.045 Sum_probs=201.6
Q ss_pred EecCCCCCCCcccccCCCcc-----cceEEEcCCCcEEEEEecC----ceEEeecccCcceeeeec-CCC-eeEEEecCC
Q 005140 196 LWNDARHLKPEPVYKRSYWT-----ESFVQWSPLGTYLATVHRQ----GAAVWGGANTFNRLMRYA-HPQ-VKLIDFSPG 264 (712)
Q Consensus 196 ~w~~~~~~~~~~~~~~~~~~-----v~~v~~Spdg~~lat~~~~----~i~iw~~~~~~~~~~~~~-~~~-v~~i~~Spd 264 (712)
.|-.+..+.....++.+... +.+++|||||++||+.... .+.+|+.. ++....... ... ...+.||||
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~-~~~~~~l~~~~~~~~~~~~~spd 91 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLE-TQQAVQLTEGKGDNTFGGFISTD 91 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETT-TTEEEECCCSSCBCTTTCEECTT
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECC-CCcEEEeecCCCCccccceECCC
Confidence 34333444444455544333 7889999999999988654 26688887 554333222 223 334889999
Q ss_pred CCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEE
Q 005140 265 EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMIS 343 (712)
Q Consensus 265 g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~ 343 (712)
|++|++++.+ +.|++||+.+++....+..+. .|++ +|+.|+... +....
T Consensus 92 g~~l~~~~~~----------~~l~~~d~~~~~~~~~~~~~~-------------------~~~~-~g~~l~~~~~~~~~~ 141 (396)
T 3c5m_A 92 ERAFFYVKNE----------LNLMKVDLETLEEQVIYTVDE-------------------EWKG-YGTWVANSDCTKLVG 141 (396)
T ss_dssp SSEEEEEETT----------TEEEEEETTTCCEEEEEECCT-------------------TEEE-EEEEEECTTSSEEEE
T ss_pred CCEEEEEEcC----------CcEEEEECCCCCcEEEEeccc-------------------ccCC-CCCEEEeccCCcccc
Confidence 9999999988 789999998887655443321 2677 888888776 44444
Q ss_pred EEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECc-CCC
Q 005140 344 VYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS-SGD 422 (712)
Q Consensus 344 iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~ 422 (712)
+|. ..+.|+|+++.+++.... .......|+++++.+.+..... ........+.|+| +|.
T Consensus 142 ~~~-----------------~~~~~spdg~~~~~~~~~--~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~ 201 (396)
T 3c5m_A 142 IEI-----------------LKRDWQPLTSWEKFAEFY--HTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDS 201 (396)
T ss_dssp EEE-----------------EGGGCCCCCSHHHHHHHH--HTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEE
T ss_pred ccc-----------------cccccCCCCcceeeeeec--cCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCC
Confidence 442 134688999888751100 0245678889988765532222 1223344568999 888
Q ss_pred EEEEEEcccccccccccccEEEEEEecCCcceeEEEecCC--CCceEEEEEeeCCCEEEEEEcCCCCCe--EEEEEeecc
Q 005140 423 YLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNK--NDKIIAFAWEPKGHRFAVIHGDSPRPD--ISFYSMRTA 498 (712)
Q Consensus 423 ~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h--~~~v~~~~~sp~g~~l~~~~~d~~~~~--v~i~d~~~~ 498 (712)
.|++.+..... .. ...||.++..+... ..+..+ ...+..++|+|+|++|++++.+..... |++||+.++
T Consensus 202 ~l~~~~~~~~~---~~--~~~l~~~d~~~~~~--~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g 274 (396)
T 3c5m_A 202 TVGFCHEGPHD---LV--DARMWLVNEDGSNV--RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL 274 (396)
T ss_dssp EEEEEECSCSS---SC--SCCCEEEETTSCCC--EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred EEEEEecCCCC---CC--CceEEEEECCCCce--eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence 88887642210 00 12344444332221 223222 235778999999999888876432224 999998765
Q ss_pred cccCceeEEEEeCCCceeEEEEcc-CCCeEEEEecc-------------CCCceEEEEECCcceeeee-cccc-------
Q 005140 499 QHAGRVSKLTTLKGKQANALFWSP-SGRFIVLAGLK-------------GFNGQLEFYNVDELETMAT-AEHF------- 556 (712)
Q Consensus 499 ~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~~~~~~-------------~~dg~v~iwd~~~~~~~~~-~~~~------- 556 (712)
.. ..+..+.. .. +.|+| ||+++++++.. ..++.|++||+.+++.... .+..
T Consensus 275 ~~----~~l~~~~~--~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~ 347 (396)
T 3c5m_A 275 EN----EEVMVMPP--CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDG 347 (396)
T ss_dssp CE----EEEEECCS--EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTT
T ss_pred Ce----EEeeeCCC--CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccc
Confidence 42 23443332 23 89999 99988875421 0147899999987665332 2222
Q ss_pred ----ceeeEEECCCCCEEEEEEccceeccccEEEEEe
Q 005140 557 ----MATDVEWDPTGRYVATAVTSVHEMENGFNIWSF 589 (712)
Q Consensus 557 ----~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~ 589 (712)
.+..++|+|||++|++++.. ++...||.+
T Consensus 348 ~~~~~~~~~~~s~dg~~l~~~s~~----~~~~~l~~~ 380 (396)
T 3c5m_A 348 DRQITHPHPSFTPNDDGVLFTSDF----EGVPAIYIA 380 (396)
T ss_dssp BSSTTCCCCEECTTSSEEEEEECT----TSSCEEEEE
T ss_pred cccCCCCCceEccCCCeEEEEecC----CCCceEEEE
Confidence 25678999999999988863 455555544
No 152
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.83 E-value=3.5e-18 Score=177.24 Aligned_cols=274 Identities=10% Similarity=0.031 Sum_probs=190.1
Q ss_pred cccceEEEcCCCcEEEEEecC-------c-eEEeecccCcceeeeecCC-CeeEEEecCCCCEEEEEc-CCCCCCCcCCC
Q 005140 214 WTESFVQWSPLGTYLATVHRQ-------G-AAVWGGANTFNRLMRYAHP-QVKLIDFSPGEKYLVTYS-SHEPSNPRDAN 283 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~~-------~-i~iw~~~~~~~~~~~~~~~-~v~~i~~Spdg~~l~t~s-~d~~~~~~~~~ 283 (712)
..+..++|||+|++|++++.+ + |.+||.. +++.+..+... .+..++|+|+|++|++++ .+
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~--------- 110 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPV-TLEVTQAIHNDLKPFGATINNTTQTLWFGNTVN--------- 110 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTT-TCCEEEEEEESSCCCSEEEETTTTEEEEEETTT---------
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCC-CCeEEEEEecCCCcceEEECCCCCEEEEEecCC---------
Confidence 345679999999999888743 3 8899998 77777777544 488999999999766554 45
Q ss_pred ccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec---CCeEEEEEcCCceecccccccc
Q 005140 284 RVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG---KNMISVYETESFTLIDKKSLKV 360 (712)
Q Consensus 284 ~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~---d~~i~iwd~~~~~~~~~~~~~~ 360 (712)
+.|.+||+.+++.+..+..+..... ....... -..+.|+| ++++++.+. ++.|.+||+.+++.+.....+.
T Consensus 111 -~~v~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 184 (353)
T 3vgz_A 111 -SAVTAIDAKTGEVKGRLVLDDRKRT--EEVRPLQ--PRELVADD-ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTG 184 (353)
T ss_dssp -TEEEEEETTTCCEEEEEESCCCCCC--SSCCCCE--EEEEEEET-TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCC
T ss_pred -CEEEEEeCCCCeeEEEEecCCCccc--cccCCCC--CceEEECC-CCCEEEEEecCCCceEEEEcCCCCceEEEecCCC
Confidence 7899999999998888766432110 0000000 01589999 999776654 7889999999888775544344
Q ss_pred cCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeee----eeecceeEEECcCCCEEEEEEcccccccc
Q 005140 361 ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL----FSVSDCKMYWQSSGDYLAVKVDRYTKTKK 436 (712)
Q Consensus 361 ~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~g~~l~~~~~~~~~~~~ 436 (712)
..+.+++|+|+++.|++ ++. ...|+.|+..+.+.+..... .......+.|+|+|+++++......
T Consensus 185 ~~~~~~~~s~dg~~l~~-----~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~---- 253 (353)
T 3vgz_A 185 KMSTGLALDSEGKRLYT-----TNA--DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAA---- 253 (353)
T ss_dssp TTCCCCEEETTTTEEEE-----ECT--TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSS----
T ss_pred CccceEEECCCCCEEEE-----EcC--CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCC----
Confidence 45889999999999887 333 45677888887765554433 1222345789999998887765422
Q ss_pred cccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEc-CCCCCeEEEEEeecccccCceeEEEEeC-CCc
Q 005140 437 STYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDISFYSMRTAQHAGRVSKLTTLK-GKQ 514 (712)
Q Consensus 437 ~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~ 514 (712)
.+.+|++... .....+.. .. ...++|+|+|++++++.. ++ .|.+||+.++. .+..+. ...
T Consensus 254 ----~v~~~d~~~~-~~~~~~~~---~~-~~~~~~s~dg~~l~v~~~~~~---~v~~~d~~~~~------~~~~~~~~~~ 315 (353)
T 3vgz_A 254 ----EVLVVDTRNG-NILAKVAA---PE-SLAVLFNPARNEAYVTHRQAG---KVSVIDAKSYK------VVKTFDTPTH 315 (353)
T ss_dssp ----EEEEEETTTC-CEEEEEEC---SS-CCCEEEETTTTEEEEEETTTT---EEEEEETTTTE------EEEEEECCSE
T ss_pred ----EEEEEECCCC-cEEEEEEc---CC-CceEEECCCCCEEEEEECCCC---eEEEEECCCCe------EEEEEecCCC
Confidence 2556665332 22233333 12 256999999998877774 55 89999987654 344443 346
Q ss_pred eeEEEEccCCCeEEEEec
Q 005140 515 ANALFWSPSGRFIVLAGL 532 (712)
Q Consensus 515 v~~l~~spdg~~l~~~~~ 532 (712)
..+++|+|+|++|+++..
T Consensus 316 ~~~~~~s~dg~~l~v~~~ 333 (353)
T 3vgz_A 316 PNSLALSADGKTLYVSVK 333 (353)
T ss_dssp EEEEEECTTSCEEEEEEE
T ss_pred CCeEEEcCCCCEEEEEEc
Confidence 789999999998888765
No 153
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.83 E-value=3e-18 Score=177.37 Aligned_cols=283 Identities=11% Similarity=0.022 Sum_probs=182.6
Q ss_pred ceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCC---CeeEEEecCCCCEEEEE-cCCCCCCCcCCCccEEEEEE
Q 005140 217 SFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHP---QVKLIDFSPGEKYLVTY-SSHEPSNPRDANRVVINIFD 291 (712)
Q Consensus 217 ~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~---~v~~i~~Spdg~~l~t~-s~d~~~~~~~~~~~~I~iwd 291 (712)
+.+++++++.++++++.++ |.+||.. +++.+..+..+ .+..++|+|+|++++.+ ..+ +.|.+||
T Consensus 3 ~g~~~~~~~~~~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~----------~~i~~~d 71 (349)
T 1jmx_B 3 TGPALKAGHEYMIVTNYPNNLHVVDVA-SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY----------GDIYGID 71 (349)
T ss_dssp -CCCCCTTCEEEEEEETTTEEEEEETT-TTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTT----------TEEEEEE
T ss_pred ccccccCCCEEEEEeCCCCeEEEEECC-CCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCC----------CcEEEEe
Confidence 4578899999999999888 8899998 77777666533 48899999999976544 455 7899999
Q ss_pred ccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-C------------CeEEEEEcCCceeccccc-
Q 005140 292 VRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-K------------NMISVYETESFTLIDKKS- 357 (712)
Q Consensus 292 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d------------~~i~iwd~~~~~~~~~~~- 357 (712)
+.+++.+..+..+.... ..+.....++|+| +|++|++++ + +.|.+||+.+++......
T Consensus 72 ~~t~~~~~~~~~~~~~~-------~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 143 (349)
T 1jmx_B 72 LDTCKNTFHANLSSVPG-------EVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRT 143 (349)
T ss_dssp TTTTEEEEEEESCCSTT-------EEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEE
T ss_pred CCCCcEEEEEEcccccc-------cccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeee
Confidence 99998877765432100 0000001589999 999998887 4 899999998765432211
Q ss_pred -ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeee------------------------cc
Q 005140 358 -LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV------------------------SD 412 (712)
Q Consensus 358 -~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------------------------~~ 412 (712)
.+...+.+++|+|+|+ +++ ++.+ |++|+..+.+.+........ ..
T Consensus 144 ~~~~~~~~~~~~s~dg~-l~~-----~~~~----i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (349)
T 1jmx_B 144 FPMPRQVYLMRAADDGS-LYV-----AGPD----IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 213 (349)
T ss_dssp EECCSSCCCEEECTTSC-EEE-----ESSS----EEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEE
T ss_pred ccCCCcccceeECCCCc-EEE-----ccCc----EEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEee
Confidence 1223588899999999 544 2222 77888877654433221110 00
Q ss_pred eeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee-CCCEEEEEEcCCCCCeEE
Q 005140 413 CKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHRFAVIHGDSPRPDIS 491 (712)
Q Consensus 413 ~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~~~~~d~~~~~v~ 491 (712)
..+.+++++...... ......++.+......+..+.+..+...+.+++|+| +|++++++ ++ .|.
T Consensus 214 ~~~~~~~d~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~---~v~ 278 (349)
T 1jmx_B 214 YTIARFKDDKQDPAT----------ADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LN---RLA 278 (349)
T ss_dssp EEEEEC-------CC----------CEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ES---EEE
T ss_pred eeeeecCCCcCCccc----------cccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cC---eEE
Confidence 111222221100000 000011222232223333344444567788999999 99999888 45 899
Q ss_pred EEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee
Q 005140 492 FYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT 552 (712)
Q Consensus 492 i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~ 552 (712)
+||+.++. .+..+. ++.+.+++|+|+|++|++++. ++.|.+||+.+++.+..
T Consensus 279 ~~d~~~~~------~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~~v~v~d~~~~~~~~~ 331 (349)
T 1jmx_B 279 KYDLKQRK------LIKAANLDHTYYCVAFDKKGDKLYLGGT---FNDLAVFNPDTLEKVKN 331 (349)
T ss_dssp EEETTTTE------EEEEEECSSCCCEEEECSSSSCEEEESB---SSEEEEEETTTTEEEEE
T ss_pred EEECccCe------EEEEEcCCCCccceEECCCCCEEEEecC---CCeEEEEeccccceeee
Confidence 99997654 333333 445789999999999998766 89999999998887765
No 154
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.83 E-value=7.6e-18 Score=192.80 Aligned_cols=364 Identities=11% Similarity=0.112 Sum_probs=216.4
Q ss_pred eEEEEECCeeEEEecCCCCCCCcccccCCCcc---c--ceEEEcCCCcEEEEEecC---------c-eEEeecccCccee
Q 005140 184 QFVIRSGTDTEVLWNDARHLKPEPVYKRSYWT---E--SFVQWSPLGTYLATVHRQ---------G-AAVWGGANTFNRL 248 (712)
Q Consensus 184 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~---v--~~v~~Spdg~~lat~~~~---------~-i~iw~~~~~~~~~ 248 (712)
++++.. ++.+.+|+. ..++....+++|... + ..++|||||++||+++.+ + +.+||+. +++..
T Consensus 29 ~~~~~~-~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~-~~~~~ 105 (740)
T 4a5s_A 29 EYLYKQ-ENNILVFNA-EYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN-KRQLI 105 (740)
T ss_dssp EEEEEE-TTEEEEEET-TTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT-TTEEC
T ss_pred cEEEEc-CCcEEEEEC-CCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECC-CCcEE
Confidence 566655 888999998 455555556666533 2 237899999999999874 3 5699999 66544
Q ss_pred eeecCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeecc-CCCcccccCCCCCc-----CCCCc
Q 005140 249 MRYAHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFK-GSADEFAVGGTGGV-----AGVSW 321 (712)
Q Consensus 249 ~~~~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~-~~~~~~~~~~~~~~-----~~~~~ 321 (712)
....+. .+..++|||||++||++. + +.|++|++.+|...+... ++...+..+....+ .+. .
T Consensus 106 ~l~~~~~~~~~~~~SPdG~~la~~~-~----------~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~-~ 173 (740)
T 4a5s_A 106 TEERIPNNTQWVTWSPVGHKLAYVW-N----------NDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA-Y 173 (740)
T ss_dssp CSSCCCTTEEEEEECSSTTCEEEEE-T----------TEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS-S
T ss_pred EcccCCCcceeeEECCCCCEEEEEE-C----------CeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC-C
Confidence 333333 499999999999999985 4 589999998887554322 22111100000000 000 0
Q ss_pred CeEEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCC-
Q 005140 322 PVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS- 398 (712)
Q Consensus 322 ~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~- 398 (712)
..+.||| ||++||+.. +..+.+|++....... .+.+.+..+.+.+.|. .+..+.|++|++.+
T Consensus 174 ~~~~wSp-Dg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G~-----------~~~~~~l~v~d~~~~ 238 (740)
T 4a5s_A 174 SALWWSP-NGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAGA-----------VNPTVKFFVVNTDSL 238 (740)
T ss_dssp BCEEECT-TSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTTS-----------CCCEEEEEEEETTSC
T ss_pred cceEECC-CCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCcC-----------cCCeeEEEEEECCCC
Confidence 1489999 999999987 5558888765221110 1233455666665542 44556788898877
Q ss_pred --ccc--eeeeee------eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCC----c-ceeEEEecCCC
Q 005140 399 --KEE--LRQKNL------FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERD----I-PIEVLELDNKN 463 (712)
Q Consensus 399 --~~~--~~~~~~------~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~----~-~~~~~~l~~h~ 463 (712)
... ...... .......+.|+|||+.+++...+... ...+.+|++.... . ....+.-.+|.
T Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~-----~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~ 313 (740)
T 4a5s_A 239 SSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQN-----YSVMDICDYDESSGRWNCLVARQHIEMSTT 313 (740)
T ss_dssp CSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTT-----EEEEEEEEEETTTTEEEECGGGCEEEECSS
T ss_pred CCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCC-----EEEEEEEECCCCccccceeEEEEeeeccCC
Confidence 521 111111 22334567899999977776554321 1236677776543 0 11112113455
Q ss_pred CceE-----EEEEeeCCCEEE-EEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEecc--C-
Q 005140 464 DKII-----AFAWEPKGHRFA-VIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLK--G- 534 (712)
Q Consensus 464 ~~v~-----~~~~sp~g~~l~-~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~--~- 534 (712)
..+. +++|+|||+.|+ ..+...+...|++|++.++.. ..+.. ....+..+. ++||+.|+..+.. .
T Consensus 314 ~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~----~~lT~-g~~~v~~~~-~~d~~~i~f~~~~~~~~ 387 (740)
T 4a5s_A 314 GWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC----TFITK-GTWEVIGIE-ALTSDYLYYISNEYKGM 387 (740)
T ss_dssp SCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC----EESCC-SSSCEEEEE-EECSSEEEEEESCGGGC
T ss_pred ceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce----Eeccc-CCEEEEEEE-EEeCCEEEEEEecCCCC
Confidence 5554 789999999988 776554445888898865432 12211 122344433 3568777776653 1
Q ss_pred -CCceEEEEECCcceee--eec----cccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 535 -FNGQLEFYNVDELETM--ATA----EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 535 -~dg~v~iwd~~~~~~~--~~~----~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
....|+..++.++... .+. .......+.|||+|++++....... ...+.+++..
T Consensus 388 ~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~--~p~~~l~~~~ 448 (740)
T 4a5s_A 388 PGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPG--LPLYTLHSSV 448 (740)
T ss_dssp TTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBS--SCEEEEEETT
T ss_pred CceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCC--CCEEEEEECC
Confidence 2345666677655432 121 2356788999999998877665310 2345555554
No 155
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.83 E-value=2.6e-19 Score=199.47 Aligned_cols=276 Identities=12% Similarity=0.054 Sum_probs=171.2
Q ss_pred CcccceEEEcCCCcEEEEEec-Cc-eEEeecccCcceeeeecCC--CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEE
Q 005140 213 YWTESFVQWSPLGTYLATVHR-QG-AAVWGGANTFNRLMRYAHP--QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVIN 288 (712)
Q Consensus 213 ~~~v~~v~~Spdg~~lat~~~-~~-i~iw~~~~~~~~~~~~~~~--~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~ 288 (712)
...|.+++|||||++||+++. ++ +.||++. ++.......+. .+.+++|||| +.+++++.+.. .....
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~-~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g-------~~~~~ 91 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYD-GGETVKLNREPINSVLDPHYGVG-RVILVRDVSKG-------AEQHA 91 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEE-TTEEEECCSSCCSEECEECTTCS-EEEEEEECSTT-------SCCEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEc-CCCcEeeecccccccccccCCCC-eEEEEeccCCC-------CcceE
Confidence 457899999999999999886 77 7799987 55444333333 5999999999 77777664100 02344
Q ss_pred EEEcc---CCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCC--EEEEecCCeEEEEEcCCceecccccccccCe
Q 005140 289 IFDVR---TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK--YFAKLGKNMISVYETESFTLIDKKSLKVENV 363 (712)
Q Consensus 289 iwd~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~--~la~~~d~~i~iwd~~~~~~~~~~~~~~~~v 363 (712)
||.+. .|... .+....... ..+|+| ||+ ++++..++.+.+|++.+++..... ....
T Consensus 92 l~~~~~~~~g~~~-~l~~~~~~~--------------~~~~s~-dg~~~~~~s~~~~~~~l~d~~~g~~~~l~--~~~~- 152 (582)
T 3o4h_A 92 LFKVNTSRPGEEQ-RLEAVKPMR--------------ILSGVD-TGEAVVFTGATEDRVALYALDGGGLRELA--RLPG- 152 (582)
T ss_dssp EEEEETTSTTCCE-ECTTSCSBE--------------EEEEEE-CSSCEEEEEECSSCEEEEEEETTEEEEEE--EESS-
T ss_pred EEEEeccCCCccc-cccCCCCce--------------eeeeCC-CCCeEEEEecCCCCceEEEccCCcEEEee--cCCC-
Confidence 54432 23322 333222221 468888 886 444445666669999877543211 1111
Q ss_pred eeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEE
Q 005140 364 MDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFE 443 (712)
Q Consensus 364 ~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 443 (712)
.+++|||||+.|++..... .+...|+++++.+
T Consensus 153 ~~~~~spDG~~la~~~~~~---~~~~~i~~~d~~~--------------------------------------------- 184 (582)
T 3o4h_A 153 FGFVSDIRGDLIAGLGFFG---GGRVSLFTSNLSS--------------------------------------------- 184 (582)
T ss_dssp CEEEEEEETTEEEEEEEEE---TTEEEEEEEETTT---------------------------------------------
T ss_pred ceEEECCCCCEEEEEEEcC---CCCeEEEEEcCCC---------------------------------------------
Confidence 5666677776666521110 0112233333211
Q ss_pred EEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEE--
Q 005140 444 LFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALF-- 519 (712)
Q Consensus 444 l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~-- 519 (712)
... ..+..|.+.+.+++|||||++|+++..++ ...|++||+.++. .. .+..+ .+..++
T Consensus 185 --------g~~--~~l~~~~~~~~~~~~SpDG~~l~~~~~~~-~~~i~~~d~~~~~------~~-~~~~~~~~~~~~~~~ 246 (582)
T 3o4h_A 185 --------GGL--RVFDSGEGSFSSASISPGMKVTAGLETAR-EARLVTVDPRDGS------VE-DLELPSKDFSSYRPT 246 (582)
T ss_dssp --------CCC--EEECCSSCEEEEEEECTTSCEEEEEECSS-CEEEEEECTTTCC------EE-ECCCSCSHHHHHCCS
T ss_pred --------CCc--eEeecCCCccccceECCCCCEEEEccCCC-eeEEEEEcCCCCc------EE-EccCCCcChhhhhhc
Confidence 111 23456678889999999999999655544 2378899987654 22 33332 455566
Q ss_pred ------EccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 520 ------WSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 520 ------~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
|||||..+++++. +|.+++|++ ++.+. .....+.+++|+ +|+++++++... ....+++|+..+
T Consensus 247 ~~~~~~~spdg~~~~~~~~---~g~~~l~~~--g~~~~-~~~~~v~~~~~s-dg~~l~~~s~~~--~p~~l~~~d~~~ 315 (582)
T 3o4h_A 247 AITWLGYLPDGRLAVVARR---EGRSAVFID--GERVE-APQGNHGRVVLW-RGKLVTSHTSLS--TPPRIVSLPSGE 315 (582)
T ss_dssp EEEEEEECTTSCEEEEEEE---TTEEEEEET--TEEEC-CCSSEEEEEEEE-TTEEEEEEEETT--EEEEEEEETTCC
T ss_pred cccceeEcCCCcEEEEEEc---CCcEEEEEE--CCeec-cCCCceEEEEec-CCEEEEEEcCCC--CCCeEEEEcCCC
Confidence 9999988888887 999999999 66554 334678899999 999998887720 013455555443
No 156
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.82 E-value=2e-20 Score=153.84 Aligned_cols=95 Identities=25% Similarity=0.484 Sum_probs=88.9
Q ss_pred cCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 005140 56 SGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135 (712)
Q Consensus 56 ~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 135 (712)
.+++++|||+|||.++++|++.+++.|+++|++||.|.+ +.||.|+.||++||||||+|.++++|.+|++.|||..++
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~--v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~ 80 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVN--MEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD 80 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEE--EECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeE--EEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccC
Confidence 467889999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CceEEEEEeeccccccc
Q 005140 136 RAHIFAVNMFDDFDKFM 152 (712)
Q Consensus 136 ~~~~l~v~~~~~~~~~~ 152 (712)
+++.+.|....+.+++.
T Consensus 81 g~r~l~V~~a~~~~~~~ 97 (100)
T 3ns6_A 81 LKHRLFLYTMKDVERYN 97 (100)
T ss_dssp SSCBCEEEESHHHHHHH
T ss_pred CCeEEEEEECchhhhhh
Confidence 85599999887777664
No 157
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.82 E-value=3.3e-17 Score=169.65 Aligned_cols=266 Identities=14% Similarity=0.146 Sum_probs=158.2
Q ss_pred ceEEeeccc-Ccce--eeee-cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc--eeeeccCCCccc
Q 005140 235 GAAVWGGAN-TFNR--LMRY-AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK--VMRDFKGSADEF 308 (712)
Q Consensus 235 ~i~iw~~~~-~~~~--~~~~-~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~--~~~~~~~~~~~~ 308 (712)
++.+|.++. ++.. +... +...+..++|||||+ |++++.. +..+.|.+|++.++. .+..+..+....
T Consensus 17 ~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~-------~~~~~v~~~~~~~g~~~~~~~~~~~~~~p 88 (347)
T 3hfq_A 17 GIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKE-------DDEGGIAAWQIDGQTAHKLNTVVAPGTPP 88 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEE-------TTEEEEEEEEEETTEEEEEEEEEEESCCC
T ss_pred CEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEec-------CCCceEEEEEecCCcEEEeeeeecCCCCC
Confidence 366776552 2332 2222 234588999999999 5555431 011789999997765 333333232222
Q ss_pred ccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcC-Cce--eccccccc---------ccCeeeEEECCCCCe
Q 005140 309 AVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETE-SFT--LIDKKSLK---------VENVMDFSWSPTDPI 374 (712)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~-~~~--~~~~~~~~---------~~~v~~~~~sp~~~~ 374 (712)
. .++|+| ||++|++++ ++.|.+|++. ++. .+...... ...+.+++|+|+|+.
T Consensus 89 ~-------------~~a~sp-dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l 154 (347)
T 3hfq_A 89 A-------------YVAVDE-ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRL 154 (347)
T ss_dssp S-------------EEEEET-TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCE
T ss_pred E-------------EEEECC-CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcE
Confidence 1 589999 999887776 7999999986 222 22111110 112566777777773
Q ss_pred EEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcce
Q 005140 375 ISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPI 454 (712)
Q Consensus 375 la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 454 (712)
+++ ...++ .|++|++.. +|.... .
T Consensus 155 ~v~-----~~~~~--~v~~~~~~~---------------------~g~~~~----------------------------~ 178 (347)
T 3hfq_A 155 AVI-----DLGSD--KVYVYNVSD---------------------AGQLSE----------------------------Q 178 (347)
T ss_dssp EEE-----ETTTT--EEEEEEECT---------------------TSCEEE----------------------------E
T ss_pred EEE-----eCCCC--EEEEEEECC---------------------CCcEEE----------------------------e
Confidence 332 22222 333333211 111100 0
Q ss_pred eEEEecCCCCceEEEEEeeCCCEEEEEEc-CCCCCeEEEEEeecccccCceeEEEEeC---C-----CceeEEEEccCCC
Q 005140 455 EVLELDNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDISFYSMRTAQHAGRVSKLTTLK---G-----KQANALFWSPSGR 525 (712)
Q Consensus 455 ~~~~l~~h~~~v~~~~~sp~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~~---~-----~~v~~l~~spdg~ 525 (712)
..... .....+..++|+|+|++++++.. ++ .|.+|++....+ .+..+..+. . ..+..++|+|||+
T Consensus 179 ~~~~~-~~g~~p~~~~~spdg~~l~v~~~~~~---~v~v~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~ 252 (347)
T 3hfq_A 179 SVLTM-EAGFGPRHLVFSPDGQYAFLAGELSS---QIASLKYDTQTG--AFTQLGIVKTIPADYTAHNGAAAIRLSHDGH 252 (347)
T ss_dssp EEEEC-CTTCCEEEEEECTTSSEEEEEETTTT---EEEEEEEETTTT--EEEEEEEEESSCTTCCSCCEEEEEEECTTSC
T ss_pred eeEEc-CCCCCCceEEECCCCCEEEEEeCCCC---EEEEEEecCCCC--ceEEeeeeeecCCCCCCCCcceeEEECCCCC
Confidence 00111 11235677999999998887765 44 899999975222 122333322 1 2467899999999
Q ss_pred eEEEEeccCCCceEEEEECCc-c--eeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 526 FIVLAGLKGFNGQLEFYNVDE-L--ETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 526 ~l~~~~~~~~dg~v~iwd~~~-~--~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
+|++++.+ ++.|.+|++.. + +.+.. .+...+..++|+|||++|++++.. ++.+.+|+++
T Consensus 253 ~l~v~~~~--~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~----~~~v~v~~~d 316 (347)
T 3hfq_A 253 FLYVSNRG--YNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQN----TDNATLYARD 316 (347)
T ss_dssp EEEEEEET--TTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETT----TTEEEEEEEC
T ss_pred EEEEEeCC--CCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcC----CCcEEEEEEe
Confidence 88665431 78999999872 2 33333 223467899999999999998873 5899999765
No 158
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.81 E-value=3.7e-18 Score=175.63 Aligned_cols=263 Identities=13% Similarity=0.096 Sum_probs=180.8
Q ss_pred eEEEEECCeeEEEecCCCCCCCcccccCCC-c-ccceEEEcCCCcEEEEEec-Cc-eEEeecccCcceeeeecCC-----
Q 005140 184 QFVIRSGTDTEVLWNDARHLKPEPVYKRSY-W-TESFVQWSPLGTYLATVHR-QG-AAVWGGANTFNRLMRYAHP----- 254 (712)
Q Consensus 184 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~-~v~~v~~Spdg~~lat~~~-~~-i~iw~~~~~~~~~~~~~~~----- 254 (712)
.+++...++.+.+|+. ..++....+.... . .+.+++|||+|++|+.++. ++ |.+||.. +++.+..+...
T Consensus 3 ~~v~~~~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~ 80 (337)
T 1pby_B 3 YILAPARPDKLVVIDT-EKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV-TGETLGRIDLSTPEER 80 (337)
T ss_dssp EEEEEETTTEEEEEET-TTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT-TCCEEEEEECCBTTEE
T ss_pred EEEEcCCCCeEEEEEC-CCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC-CCCeEeeEEcCCcccc
Confidence 4566777888889998 3444444444222 1 4788999999987765554 45 8899998 67766555421
Q ss_pred --CeeEEEecCCCCEEEEEc------------CCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCC
Q 005140 255 --QVKLIDFSPGEKYLVTYS------------SHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVS 320 (712)
Q Consensus 255 --~v~~i~~Spdg~~l~t~s------------~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (712)
.+.+++|+|+|++|++++ .+ +.|.+||+.+++.++.+.......
T Consensus 81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~----------~~i~v~d~~~~~~~~~~~~~~~~~------------ 138 (337)
T 1pby_B 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP----------TRVALYDAETLSRRKAFEAPRQIT------------ 138 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECC----------CEEEEEETTTTEEEEEEECCSSCC------------
T ss_pred cccccceEECCCCCEEEEEecccccccccccccC----------ceEEEEECCCCcEEEEEeCCCCcc------------
Confidence 578899999999998886 34 789999999988887776543322
Q ss_pred cCeEEecCCCCCEEEEecCCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCe-----------
Q 005140 321 WPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPA----------- 389 (712)
Q Consensus 321 ~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~----------- 389 (712)
.++|+| +|++|+++ ++.|.+||+.+++.+....... ....+.|+|++..|++ .+.....
T Consensus 139 --~~~~s~-dg~~l~~~-~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~-----~~~~~~~~~~~~~~~~~~ 208 (337)
T 1pby_B 139 --MLAWAR-DGSKLYGL-GRDLHVMDPEAGTLVEDKPIQS-WEAETYAQPDVLAVWN-----QHESSGVMATPFYTARKD 208 (337)
T ss_dssp --CEEECT-TSSCEEEE-SSSEEEEETTTTEEEEEECSTT-TTTTTBCCCBCCCCCC-----CCTTTTEEEEEEEEEBTT
T ss_pred --eeEECC-CCCEEEEe-CCeEEEEECCCCcEeeeeeccc-cCCCceeCCCccEEee-----eccCCCceeeeeeccccc
Confidence 589999 99988877 7899999999887664332222 1124488999987765 2222221
Q ss_pred -----------EEEEEecCCccceeeeeee--eecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeE
Q 005140 390 -----------RVSLVQIPSKEELRQKNLF--SVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEV 456 (712)
Q Consensus 390 -----------~i~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 456 (712)
.|++++..+.+.. ..... ......+.|+|+|++++++ ++. +.+|++... .....
T Consensus 209 ~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~---------v~~~d~~~~-~~~~~ 275 (337)
T 1pby_B 209 IDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNV---------LESFDLEKN-ASIKR 275 (337)
T ss_dssp SCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESE---------EEEEETTTT-EEEEE
T ss_pred cccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCe---------EEEEECCCC-cCcce
Confidence 5788888776543 22221 1233457899999999887 222 567765432 22222
Q ss_pred EEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeeccc
Q 005140 457 LELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQ 499 (712)
Q Consensus 457 ~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~ 499 (712)
+.. ...+.+++|+|+|++|++++.++ .|.+||+.++.
T Consensus 276 ~~~---~~~~~~~~~s~dg~~l~~~~~~~---~i~v~d~~~~~ 312 (337)
T 1pby_B 276 VPL---PHSYYSVNVSTDGSTVWLGGALG---DLAAYDAETLE 312 (337)
T ss_dssp EEC---SSCCCEEEECTTSCEEEEESBSS---EEEEEETTTCC
T ss_pred ecC---CCceeeEEECCCCCEEEEEcCCC---cEEEEECcCCc
Confidence 333 45678999999999999887666 99999997654
No 159
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.80 E-value=1.4e-18 Score=193.48 Aligned_cols=259 Identities=9% Similarity=0.008 Sum_probs=168.5
Q ss_pred CeeEEEecCCCCEEEEEcC-CCCCCCcCCCccEEEEEEccCCceeeeccCCC-cccccCCCCCcCCCCcCeEEecCCCCC
Q 005140 255 QVKLIDFSPGEKYLVTYSS-HEPSNPRDANRVVINIFDVRTGKVMRDFKGSA-DEFAVGGTGGVAGVSWPVFRWGGGKDK 332 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~-d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~dg~ 332 (712)
.|.+++|||||++||+++. + ++++||++.+++. +.+..+. ..+. .+.||| | +
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~----------g~~~lw~~~~g~~-~~lt~~~~~~~~-------------~~~~sp-d-~ 76 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSE----------GSVNAYLYDGGET-VKLNREPINSVL-------------DPHYGV-G-R 76 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEET----------TEEEEEEEETTEE-EECCSSCCSEEC-------------EECTTC-S-E
T ss_pred chheeecCCCCCeEEEEEccC----------CceeEEEEcCCCc-Eeeecccccccc-------------cccCCC-C-e
Confidence 4999999999999999887 7 8999999866654 4444443 2331 689999 8 6
Q ss_pred EEEEec----CCeEEEEEcCC---ceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeee
Q 005140 333 YFAKLG----KNMISVYETES---FTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK 405 (712)
Q Consensus 333 ~la~~~----d~~i~iwd~~~---~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 405 (712)
+++++. +....+|.++. +... ......++..++|+|+|+.+++... .....
T Consensus 77 ~l~~~~~~~g~~~~~l~~~~~~~~g~~~--~l~~~~~~~~~~~s~dg~~~~~~s~----~~~~~---------------- 134 (582)
T 3o4h_A 77 VILVRDVSKGAEQHALFKVNTSRPGEEQ--RLEAVKPMRILSGVDTGEAVVFTGA----TEDRV---------------- 134 (582)
T ss_dssp EEEEEECSTTSCCEEEEEEETTSTTCCE--ECTTSCSBEEEEEEECSSCEEEEEE----CSSCE----------------
T ss_pred EEEEeccCCCCcceEEEEEeccCCCccc--cccCCCCceeeeeCCCCCeEEEEec----CCCCc----------------
Confidence 666544 34556665442 2111 1122234455677777765544211 11111
Q ss_pred eeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCC
Q 005140 406 NLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDS 485 (712)
Q Consensus 406 ~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~ 485 (712)
.+|++.... . ..+..+.. .+++|||||++|++++.+.
T Consensus 135 -------------------------------------~l~d~~~g~--~--~~l~~~~~--~~~~~spDG~~la~~~~~~ 171 (582)
T 3o4h_A 135 -------------------------------------ALYALDGGG--L--RELARLPG--FGFVSDIRGDLIAGLGFFG 171 (582)
T ss_dssp -------------------------------------EEEEEETTE--E--EEEEEESS--CEEEEEEETTEEEEEEEEE
T ss_pred -------------------------------------eEEEccCCc--E--EEeecCCC--ceEEECCCCCEEEEEEEcC
Confidence 233332110 0 11111122 7889999999999887762
Q ss_pred CC-CeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCc--eEEEEECCcceeee-eccccceeeE
Q 005140 486 PR-PDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNG--QLEFYNVDELETMA-TAEHFMATDV 561 (712)
Q Consensus 486 ~~-~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg--~v~iwd~~~~~~~~-~~~~~~v~~~ 561 (712)
.. ..|++||+.++.. ..+ .-....+..++|||||++|+++.. ++ .|++||+.+++... ..+...+..+
T Consensus 172 ~~~~~i~~~d~~~g~~----~~l-~~~~~~~~~~~~SpDG~~l~~~~~---~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 243 (582)
T 3o4h_A 172 GGRVSLFTSNLSSGGL----RVF-DSGEGSFSSASISPGMKVTAGLET---AREARLVTVDPRDGSVEDLELPSKDFSSY 243 (582)
T ss_dssp TTEEEEEEEETTTCCC----EEE-CCSSCEEEEEEECTTSCEEEEEEC---SSCEEEEEECTTTCCEEECCCSCSHHHHH
T ss_pred CCCeEEEEEcCCCCCc----eEe-ecCCCccccceECCCCCEEEEccC---CCeeEEEEEcCCCCcEEEccCCCcChhhh
Confidence 11 2789999876542 122 112335789999999999996655 66 89999999876652 2344556666
Q ss_pred E--------ECCCCCEEEEEEccceeccccEEEEEecCceeeeecccceeeeEEecCCCCCCChhhH
Q 005140 562 E--------WDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRTLKDHFFQFLWRPRPPSFLTPEKE 620 (712)
Q Consensus 562 ~--------~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~~~~~i~~~~w~p~~~~l~s~~~d 620 (712)
+ |||||+.+++++. ++.++||++ |+.+. ...+.+..++|+ +++.+++.+.+
T Consensus 244 ~~~~~~~~~~spdg~~~~~~~~-----~g~~~l~~~-g~~~~-~~~~~v~~~~~s-dg~~l~~~s~~ 302 (582)
T 3o4h_A 244 RPTAITWLGYLPDGRLAVVARR-----EGRSAVFID-GERVE-APQGNHGRVVLW-RGKLVTSHTSL 302 (582)
T ss_dssp CCSEEEEEEECTTSCEEEEEEE-----TTEEEEEET-TEEEC-CCSSEEEEEEEE-TTEEEEEEEET
T ss_pred hhccccceeEcCCCcEEEEEEc-----CCcEEEEEE-CCeec-cCCCceEEEEec-CCEEEEEEcCC
Confidence 6 9999988888888 899999999 76554 444778899999 88888776654
No 160
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.79 E-value=4e-18 Score=179.47 Aligned_cols=314 Identities=11% Similarity=0.036 Sum_probs=180.2
Q ss_pred eecccCcceeeeec-CC-CeeE-----EEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccC
Q 005140 239 WGGANTFNRLMRYA-HP-QVKL-----IDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVG 311 (712)
Q Consensus 239 w~~~~~~~~~~~~~-~~-~v~~-----i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~ 311 (712)
++.. ++..+.++. +. .... ++|||||++|++++... +...|.+||+.+++..+...++....
T Consensus 15 ~~~~-~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~-------g~~~l~~~d~~~g~~~~lt~~~~~~~--- 83 (388)
T 3pe7_A 15 QDAS-TGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFD-------GPWNYYLLDLNTQVATQLTEGRGDNT--- 83 (388)
T ss_dssp ECTT-TCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTT-------SSCEEEEEETTTCEEEECCCSSCBCS---
T ss_pred ecCC-CCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCC-------CCceEEEEeCCCCceEEeeeCCCCCc---
Confidence 3444 555555553 23 2444 88999999999998731 11369999998888776665554432
Q ss_pred CCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeee--EEECCCCCeEEEEeecCCCCCCC
Q 005140 312 GTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMD--FSWSPTDPIISLFVPELGGGNQP 388 (712)
Q Consensus 312 ~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~--~~~sp~~~~la~~~~~~~~~~~~ 388 (712)
+ .+.||| ||++|+++. ++.|.+|++.+++.......+...+.. ..++|++..++...... .
T Consensus 84 ---------~-~~~~sp-dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~--~--- 147 (388)
T 3pe7_A 84 ---------F-GGFLSP-DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRR--E--- 147 (388)
T ss_dssp ---------S-SCEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEG--G---
T ss_pred ---------c-ceEEcC-CCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccC--c---
Confidence 1 368999 999999988 789999999987654332223222322 34589998887521110 0
Q ss_pred eEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEE
Q 005140 389 ARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIA 468 (712)
Q Consensus 389 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~ 468 (712)
. |.+...+..+. ..........||.++...... ..+..+...+..
T Consensus 148 ---------~------------------~~~~~~~~~~~------~~~~~~~~~~l~~~d~~~g~~--~~l~~~~~~~~~ 192 (388)
T 3pe7_A 148 ---------D------------------WVPLTDWKKFH------EFYFTKPCCRLMRVDLKTGES--TVILQENQWLGH 192 (388)
T ss_dssp ---------G------------------CCCCCSHHHHH------HHGGGCCCEEEEEEETTTCCE--EEEEEESSCEEE
T ss_pred ---------c------------------cccccccchhh------hhhccCCcceEEEEECCCCce--EEeecCCccccc
Confidence 0 01100000000 000000001233333222222 222234667889
Q ss_pred EEEee-CCCEEEEEEcCC---CCCeEEEEEeecccccCceeEEEEeCC-CceeEEEEccCCCeEEEEeccC--CCceEEE
Q 005140 469 FAWEP-KGHRFAVIHGDS---PRPDISFYSMRTAQHAGRVSKLTTLKG-KQANALFWSPSGRFIVLAGLKG--FNGQLEF 541 (712)
Q Consensus 469 ~~~sp-~g~~l~~~~~d~---~~~~v~i~d~~~~~~~~~~~~~~~~~~-~~v~~l~~spdg~~l~~~~~~~--~dg~v~i 541 (712)
++|+| +|++|+++.... ....|.++++.++.. ..+..... ..+..++|||||+.|++.+... .++.|++
T Consensus 193 ~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~----~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 268 (388)
T 3pe7_A 193 PIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM----RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYS 268 (388)
T ss_dssp EEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC----EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEE
T ss_pred cEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce----EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEE
Confidence 99999 999999888632 123677777654321 12221111 2467889999999887765422 1234999
Q ss_pred EECCcceeeee--ccc-----cceeeEEECCCCCEEEEEEcc----ceeccccEEEEEecCceeeee--ccc--------
Q 005140 542 YNVDELETMAT--AEH-----FMATDVEWDPTGRYVATAVTS----VHEMENGFNIWSFNGKLLYRT--LKD-------- 600 (712)
Q Consensus 542 wd~~~~~~~~~--~~~-----~~v~~~~~spdg~~l~t~s~~----~~~~d~~v~iw~~~g~~~~~~--~~~-------- 600 (712)
||+.+++.... ... .....+.|||||++|++.... ....+..|++|++.+..+... +..
T Consensus 269 ~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~ 348 (388)
T 3pe7_A 269 ADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGD 348 (388)
T ss_dssp ECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTB
T ss_pred EecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccc
Confidence 99998764322 111 012335899999998875420 001156899999986654433 223
Q ss_pred ---ceeeeEEecCCCCCCChh
Q 005140 601 ---HFFQFLWRPRPPSFLTPE 618 (712)
Q Consensus 601 ---~i~~~~w~p~~~~l~s~~ 618 (712)
.+..++|+|+|+.|+..+
T Consensus 349 ~~~~~~~~~~spDg~~l~~~s 369 (388)
T 3pe7_A 349 RQVTHPHPSFTPDDKQILFTS 369 (388)
T ss_dssp SSTTCCCCEECTTSSEEEEEE
T ss_pred cccCCCCccCCCCCCEEEEEe
Confidence 478899999999887554
No 161
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.79 E-value=1.9e-16 Score=163.93 Aligned_cols=274 Identities=10% Similarity=0.093 Sum_probs=166.2
Q ss_pred eeEEEecCCCC-CCCcc-cccCCCcccceEEEcCCCcEEEEEec---Cc-eEEeecccCcc--eeeee--cCCCeeEEEe
Q 005140 192 DTEVLWNDARH-LKPEP-VYKRSYWTESFVQWSPLGTYLATVHR---QG-AAVWGGANTFN--RLMRY--AHPQVKLIDF 261 (712)
Q Consensus 192 ~~~~~w~~~~~-~~~~~-~~~~~~~~v~~v~~Spdg~~lat~~~---~~-i~iw~~~~~~~--~~~~~--~~~~v~~i~~ 261 (712)
+.+.+|..+.. +.... ....+......++|||||+ |++++. ++ |.+|++. ++. .+..+ +...+..++|
T Consensus 16 ~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~-~g~~~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 16 QGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQID-GQTAHKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp CEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEE-TTEEEEEEEEEEESCCCSEEEE
T ss_pred CCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEec-CCcEEEeeeeecCCCCCEEEEE
Confidence 34456655332 22211 2234456678899999999 555543 34 8899997 443 33332 2345899999
Q ss_pred cCCCCEEEEEc-CCCCCCCcCCCccEEEEEEcc-CCc--eeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEe
Q 005140 262 SPGEKYLVTYS-SHEPSNPRDANRVVINIFDVR-TGK--VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKL 337 (712)
Q Consensus 262 Spdg~~l~t~s-~d~~~~~~~~~~~~I~iwd~~-~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~ 337 (712)
||||++|++++ .+ +.|.+|++. +|. .+..+....... .....+.....++|+| +|+++++.
T Consensus 94 spdg~~l~~~~~~~----------~~v~v~~~~~~g~~~~~~~~~~~~~~p----~~~~~~~~~~~~~~sp-dg~l~v~~ 158 (347)
T 3hfq_A 94 DEARQLVYSANYHK----------GTAEVMKIAADGALTLTDTVQHSGHGP----RPEQDGSHIHYTDLTP-DNRLAVID 158 (347)
T ss_dssp ETTTTEEEEEETTT----------TEEEEEEECTTSCEEEEEEEECCCCCS----STTCSSCCEEEEEECT-TSCEEEEE
T ss_pred CCCCCEEEEEeCCC----------CEEEEEEeCCCCCeeecceeecCCCCC----CccccCCCceEEEECC-CCcEEEEe
Confidence 99999998887 45 789999985 333 233322111000 0000000011589999 99966655
Q ss_pred c-CCeEEEEEcC-Cceecccc--ccc-ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccc--eeeeeeee-
Q 005140 338 G-KNMISVYETE-SFTLIDKK--SLK-VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE--LRQKNLFS- 409 (712)
Q Consensus 338 ~-d~~i~iwd~~-~~~~~~~~--~~~-~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~- 409 (712)
. ++.|.+|++. ++.+.... ... ..++..++|+|+|++|++. +..++.+.+|.++....+. +.......
T Consensus 159 ~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~----~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~ 234 (347)
T 3hfq_A 159 LGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLA----GELSSQIASLKYDTQTGAFTQLGIVKTIPA 234 (347)
T ss_dssp TTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEE----ETTTTEEEEEEEETTTTEEEEEEEEESSCT
T ss_pred CCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEE----eCCCCEEEEEEecCCCCceEEeeeeeecCC
Confidence 5 8899999998 45432211 121 2257889999999977652 2345556666665433332 11111111
Q ss_pred -----ecceeEEECcCCCEEEEEEc-ccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEc
Q 005140 410 -----VSDCKMYWQSSGDYLAVKVD-RYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG 483 (712)
Q Consensus 410 -----~~~~~~~~s~~g~~l~~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~ 483 (712)
.....+.|+|+|++|++... ++. +.+|++...+.......+..+...+.+++|+|+|++|+++..
T Consensus 235 ~~~~~~~~~~i~~spdG~~l~v~~~~~~~---------v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 305 (347)
T 3hfq_A 235 DYTAHNGAAAIRLSHDGHFLYVSNRGYNT---------LAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQ 305 (347)
T ss_dssp TCCSCCEEEEEEECTTSCEEEEEEETTTE---------EEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEET
T ss_pred CCCCCCcceeEEECCCCCEEEEEeCCCCE---------EEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEc
Confidence 12445789999998876544 333 788998754332233345455667889999999999999887
Q ss_pred CCCCCeEEEEEeec
Q 005140 484 DSPRPDISFYSMRT 497 (712)
Q Consensus 484 d~~~~~v~i~d~~~ 497 (712)
+.. .|.+|+++.
T Consensus 306 ~~~--~v~v~~~d~ 317 (347)
T 3hfq_A 306 NTD--NATLYARDL 317 (347)
T ss_dssp TTT--EEEEEEECT
T ss_pred CCC--cEEEEEEeC
Confidence 532 899997753
No 162
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.78 E-value=4e-16 Score=162.39 Aligned_cols=300 Identities=10% Similarity=0.082 Sum_probs=180.2
Q ss_pred cCCCcEEEEEec-----CceEEeeccc-Cc--ceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc
Q 005140 222 SPLGTYLATVHR-----QGAAVWGGAN-TF--NRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR 293 (712)
Q Consensus 222 Spdg~~lat~~~-----~~i~iw~~~~-~~--~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~ 293 (712)
.+...+++.|+. .+|.+|.++. ++ ..+...+...+..++|||||++|++++.+. ...+.|.+|++.
T Consensus 10 ~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~------~~~~~v~~~~~~ 83 (361)
T 3scy_A 10 TDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFS------KDQAAVSAFAFD 83 (361)
T ss_dssp GGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCS------STTCEEEEEEEE
T ss_pred CCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccC------CCCCcEEEEEEe
Confidence 344455556542 2478886641 22 233333344588999999999999988751 112689999886
Q ss_pred C--Cce--eeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCceecccccc---------
Q 005140 294 T--GKV--MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSL--------- 358 (712)
Q Consensus 294 ~--g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~--------- 358 (712)
. |.. +.....+... ...++. ++++|++++ ++.|.+|++.....+.....
T Consensus 84 ~~~g~~~~~~~~~~~~~~---------------p~~~~~-dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~ 147 (361)
T 3scy_A 84 KEKGTLHLLNTQKTMGAD---------------PCYLTT-NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGP 147 (361)
T ss_dssp TTTTEEEEEEEEECSSSC---------------EEEEEE-CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCS
T ss_pred CCCCcEEEeeEeccCCCC---------------cEEEEE-CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCC
Confidence 5 432 2233222211 123334 677666665 89999999975433221110
Q ss_pred -----cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc----c-ce-----eeeee-eeecceeEEECcCCC
Q 005140 359 -----KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK----E-EL-----RQKNL-FSVSDCKMYWQSSGD 422 (712)
Q Consensus 359 -----~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~----~-~~-----~~~~~-~~~~~~~~~~s~~g~ 422 (712)
....+.+++|+|+|++|++. ...++.+.+|.++.... + .. ..... .......+.|+|+|+
T Consensus 148 ~~~~~~~~~~~~~~~spdg~~l~~~----~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~ 223 (361)
T 3scy_A 148 DKERQTMPHLHCVRITPDGKYLLAD----DLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGK 223 (361)
T ss_dssp CTTTCSSCCEEEEEECTTSSEEEEE----ETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSS
T ss_pred CccccCCCcceEEEECCCCCEEEEE----eCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCC
Confidence 11235789999999977662 22344455555544332 1 10 11111 122334678999999
Q ss_pred EEEEEEc-ccccccccccccEEEEEEecCCcceeEEE---ecCCCCceEEEEEeeCCCEEEEEEcC--CCCCeEEEEEee
Q 005140 423 YLAVKVD-RYTKTKKSTYTGFELFRIKERDIPIEVLE---LDNKNDKIIAFAWEPKGHRFAVIHGD--SPRPDISFYSMR 496 (712)
Q Consensus 423 ~l~~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~---l~~h~~~v~~~~~sp~g~~l~~~~~d--~~~~~v~i~d~~ 496 (712)
++++... ++. +.+|++... ....... ...+...+.+++|+|+|++|+++..+ + .|.+|+++
T Consensus 224 ~l~v~~~~~~~---------v~v~~~~~g-~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~---~i~v~~~~ 290 (361)
T 3scy_A 224 FAYLINEIGGT---------VIAFRYADG-MLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKAD---GVAIFKVD 290 (361)
T ss_dssp EEEEEETTTCE---------EEEEEEETT-EEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSC---EEEEEEEC
T ss_pred EEEEEcCCCCe---------EEEEEecCC-ceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCC---EEEEEEEc
Confidence 9888763 333 788888732 1111111 22334557899999999999877765 4 89999996
Q ss_pred cccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEEC--Ccceeeeec---cccceeeEEEC
Q 005140 497 TAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNV--DELETMATA---EHFMATDVEWD 564 (712)
Q Consensus 497 ~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~--~~~~~~~~~---~~~~v~~~~~s 564 (712)
...+ ....+..+. +..+..++|+|+|++|++++.. ++.|.+|.+ .++++.... +...++|+.|.
T Consensus 291 ~~~g--~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~--~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 291 ETNG--TLTKVGYQLTGIHPRNFIITPNGKYLLVACRD--TNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp TTTC--CEEEEEEEECSSCCCEEEECTTSCEEEEEETT--TTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred CCCC--cEEEeeEecCCCCCceEEECCCCCEEEEEECC--CCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 3222 122444433 3467899999999999988741 688999654 466665443 44677888875
No 163
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.78 E-value=5.9e-19 Score=146.60 Aligned_cols=100 Identities=45% Similarity=0.812 Sum_probs=91.3
Q ss_pred ccCcccccCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHH
Q 005140 49 DDDQEVESGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEK 128 (712)
Q Consensus 49 ~~~~~~~~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~ 128 (712)
+++|..+.+.+++|||+|||...++++++++..|+++|++||.|.. +.|+ +.+|+++|||||+|.+.++|.+|++.
T Consensus 5 ~~~~~~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~--v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~ 80 (105)
T 2nlw_A 5 KDRPQEADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITN--DFYP--EEDGKTKGYIFLEYASPAHAVDAVKN 80 (105)
T ss_dssp SSCCCSCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEE--EECC--CBTTBSCCEEEEEECSSSHHHHHHHH
T ss_pred cCCCCCCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEE--EEee--CCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 5566777888999999999988877777899999999999999999 9998 35899999999999999999999999
Q ss_pred hCCCccCCceEEEEEeeccccccc
Q 005140 129 TNGYKLDRAHIFAVNMFDDFDKFM 152 (712)
Q Consensus 129 ~~~~~~~~~~~l~v~~~~~~~~~~ 152 (712)
|||..++++|.+.|....+.++|.
T Consensus 81 l~g~~~~g~~~l~V~~a~~~~k~~ 104 (105)
T 2nlw_A 81 ADGYKLDKQHTFRVNLFTDFDKYM 104 (105)
T ss_dssp CSSEECSTTCEEEEECSCCCCCCC
T ss_pred hCCcccCCCceEEEEEcchHhhhc
Confidence 999999998899999999888875
No 164
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.77 E-value=9.6e-16 Score=159.53 Aligned_cols=299 Identities=12% Similarity=0.124 Sum_probs=182.8
Q ss_pred ecCCCCEEEEEcCCCCCCCcCCCccEEEEEEc--cCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec
Q 005140 261 FSPGEKYLVTYSSHEPSNPRDANRVVINIFDV--RTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG 338 (712)
Q Consensus 261 ~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~ 338 (712)
..+...+++.|+.... ..+.|.+|.+ .+|+.......+..... .++|+| ||++|++++
T Consensus 9 ~~~~~~~~~vg~y~~~------~~~~i~~~~~d~~~g~~~~~~~~~~~~p~-------------~l~~sp-dg~~l~~~~ 68 (361)
T 3scy_A 9 TTDSELTMLVGTYTSG------NSKGIYTFRFNEETGESLPLSDAEVANPS-------------YLIPSA-DGKFVYSVN 68 (361)
T ss_dssp GGGGEEEEEEEECCSS------SCCEEEEEEEETTTCCEEEEEEEECSCCC-------------SEEECT-TSSEEEEEE
T ss_pred hCCCceEEEEEeccCC------CCCCEEEEEEeCCCCCEEEeecccCCCCc-------------eEEECC-CCCEEEEEE
Confidence 3444556666654411 1156888866 45654322211222111 489999 999998887
Q ss_pred -C----CeEEEEEcCC--ceecc--cccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeee---e
Q 005140 339 -K----NMISVYETES--FTLID--KKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK---N 406 (712)
Q Consensus 339 -d----~~i~iwd~~~--~~~~~--~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~ 406 (712)
+ +.|.+|++.. +.+.. ....+......+++ ++++|++. ...+ ..+.+|++.....+... .
T Consensus 69 ~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~----~~~~--~~v~~~~~~~~g~~~~~~~~~ 140 (361)
T 3scy_A 69 EFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTA----NYSG--GSITVFPIGQDGALLPASDVI 140 (361)
T ss_dssp CCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEE----ETTT--TEEEEEEBCTTSCBCSCSEEE
T ss_pred ccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEE----ECCC--CEEEEEEeCCCCcCcccceeE
Confidence 3 7999998864 44322 11112334667777 78877762 1133 44556665433222111 0
Q ss_pred eee-----------ecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCc----c-e------eEEEecCCCC
Q 005140 407 LFS-----------VSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDI----P-I------EVLELDNKND 464 (712)
Q Consensus 407 ~~~-----------~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~----~-~------~~~~l~~h~~ 464 (712)
.+. .....+.|+|+|+++++..... ..+.+|++..... . . ....+ .+..
T Consensus 141 ~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~--------~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~ 211 (361)
T 3scy_A 141 EFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGT--------DQIHKFNINPNANADNKEKFLTKGTPEAFKV-APGS 211 (361)
T ss_dssp ECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTT--------TEEEEEEECTTCCTTTCCCCEEEEEEEEEEC-CTTC
T ss_pred EccCCCCCccccCCCcceEEEECCCCCEEEEEeCCC--------CEEEEEEEcCCCCcccccceeecccccceec-CCCC
Confidence 000 0113478999999888765421 1278888876542 1 1 12233 3455
Q ss_pred ceEEEEEeeCCCEEEEEEc-CCCCCeEEEEEeecccccCceeEEEEeC---C--CceeEEEEccCCCeEEEEeccCCCce
Q 005140 465 KIIAFAWEPKGHRFAVIHG-DSPRPDISFYSMRTAQHAGRVSKLTTLK---G--KQANALFWSPSGRFIVLAGLKGFNGQ 538 (712)
Q Consensus 465 ~v~~~~~sp~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~~---~--~~v~~l~~spdg~~l~~~~~~~~dg~ 538 (712)
.+..++|+|+|++++++.. ++ .|.+|++.++. +..+..+. . .....++|||||++|+++..+. ++.
T Consensus 212 ~~~~~~~spdg~~l~v~~~~~~---~v~v~~~~~g~----~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~-~~~ 283 (361)
T 3scy_A 212 GPRHLIFNSDGKFAYLINEIGG---TVIAFRYADGM----LDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK-ADG 283 (361)
T ss_dssp CEEEEEECTTSSEEEEEETTTC---EEEEEEEETTE----EEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS-SCE
T ss_pred CCeEEEEcCCCCEEEEEcCCCC---eEEEEEecCCc----eEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC-CCE
Confidence 6789999999999988874 55 89999997543 22333332 1 2357899999999998877621 378
Q ss_pred EEEEECC--cce--eeeec-cccceeeEEECCCCCEEEEEEccceeccccEEEEEec---Cceeee---ecccceeeeEE
Q 005140 539 LEFYNVD--ELE--TMATA-EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN---GKLLYR---TLKDHFFQFLW 607 (712)
Q Consensus 539 v~iwd~~--~~~--~~~~~-~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~---g~~~~~---~~~~~i~~~~w 607 (712)
|.+|+++ +++ .+... ....+.+++|+|||++|++++.. ++.+.+|.++ |.+... .+...+.++.|
T Consensus 284 i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~----~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~ 359 (361)
T 3scy_A 284 VAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRD----TNVIQIFERDQATGLLTDIKKDIKVDKPVCLKF 359 (361)
T ss_dssp EEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETT----TTEEEEEEECTTTCCEEECSCCEECSSEEEEEE
T ss_pred EEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECC----CCCEEEEEEECCCCcEeecceeeeCCCCeEEEE
Confidence 9999986 344 23222 13467899999999999998853 7899998775 333322 24467888888
Q ss_pred e
Q 005140 608 R 608 (712)
Q Consensus 608 ~ 608 (712)
.
T Consensus 360 ~ 360 (361)
T 3scy_A 360 V 360 (361)
T ss_dssp E
T ss_pred c
Confidence 6
No 165
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.77 E-value=7.9e-18 Score=177.60 Aligned_cols=300 Identities=10% Similarity=0.079 Sum_probs=182.6
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEE
Q 005140 256 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA 335 (712)
Q Consensus 256 v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la 335 (712)
+.+++|||||++|++..... ....|++||+.+++..+....+.... . .+.||| ||++|+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~-------g~~~l~~~d~~~~~~~~l~~~~~~~~------------~-~~~~sp-dg~~l~ 96 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFD-------GNRNYYLLNLETQQAVQLTEGKGDNT------------F-GGFIST-DERAFF 96 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTT-------SSCEEEEEETTTTEEEECCCSSCBCT------------T-TCEECT-TSSEEE
T ss_pred eecCcCCCCCCEEEEEEecC-------CCceEEEEECCCCcEEEeecCCCCcc------------c-cceECC-CCCEEE
Confidence 67889999999998876541 11478999998877544433332211 1 368999 999998
Q ss_pred Eec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeeccee
Q 005140 336 KLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCK 414 (712)
Q Consensus 336 ~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 414 (712)
+++ ++.|.+|++.++........+. .|+|+|+.|++ ........++. ..
T Consensus 97 ~~~~~~~l~~~d~~~~~~~~~~~~~~------~~~~~g~~l~~-----~~~~~~~~~~~-------------------~~ 146 (396)
T 3c5m_A 97 YVKNELNLMKVDLETLEEQVIYTVDE------EWKGYGTWVAN-----SDCTKLVGIEI-------------------LK 146 (396)
T ss_dssp EEETTTEEEEEETTTCCEEEEEECCT------TEEEEEEEEEC-----TTSSEEEEEEE-------------------EG
T ss_pred EEEcCCcEEEEECCCCCcEEEEeccc------ccCCCCCEEEe-----ccCCccccccc-------------------cc
Confidence 888 7789999998775432211111 27788888887 33332222211 02
Q ss_pred EEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEee-CCCEEEEEEcCCC---CCeE
Q 005140 415 MYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEP-KGHRFAVIHGDSP---RPDI 490 (712)
Q Consensus 415 ~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp-~g~~l~~~~~d~~---~~~v 490 (712)
..|+|+|+.+++...... .....||.++....... .+..+...+..++|+| +++.|++++.+.. ...|
T Consensus 147 ~~~spdg~~~~~~~~~~~------~~~~~l~~~d~~~g~~~--~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l 218 (396)
T 3c5m_A 147 RDWQPLTSWEKFAEFYHT------NPTCRLIKVDIETGELE--VIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARM 218 (396)
T ss_dssp GGCCCCCSHHHHHHHHHT------CCCEEEEEEETTTCCEE--EEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCC
T ss_pred cccCCCCcceeeeeeccC------CCcceEEEEECCCCcEE--eeccCCcccccceECCCCCCEEEEEecCCCCCCCceE
Confidence 357888887665431000 01124444443332222 2224467789999999 8998888875321 0367
Q ss_pred EEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCC--ceEEEEECCcceeeeeccccceeeEEECC-C
Q 005140 491 SFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFN--GQLEFYNVDELETMATAEHFMATDVEWDP-T 566 (712)
Q Consensus 491 ~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~d--g~v~iwd~~~~~~~~~~~~~~v~~~~~sp-d 566 (712)
.+|++.++.. ..+.... ...+..++|||||++|++++..... +.|++||+.+++........... +.|+| |
T Consensus 219 ~~~d~~~~~~----~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~-~~~s~~d 293 (396)
T 3c5m_A 219 WLVNEDGSNV----RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPPCS-HLMSNFD 293 (396)
T ss_dssp EEEETTSCCC----EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCSEE-EEEECSS
T ss_pred EEEECCCCce----eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCCCC-CCccCCC
Confidence 8888754321 1221111 2246789999999998887652112 55999999877654332222233 89999 9
Q ss_pred CCEEEEEEccc-----------eeccccEEEEEecCceeeee--ccc-----------ceeeeEEecCCCCCCChhh
Q 005140 567 GRYVATAVTSV-----------HEMENGFNIWSFNGKLLYRT--LKD-----------HFFQFLWRPRPPSFLTPEK 619 (712)
Q Consensus 567 g~~l~t~s~~~-----------~~~d~~v~iw~~~g~~~~~~--~~~-----------~i~~~~w~p~~~~l~s~~~ 619 (712)
|++|++++... ...+..+++|++.+..+... +.. ....+.|+|+++.|+..+.
T Consensus 294 g~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~ 370 (396)
T 3c5m_A 294 GSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSD 370 (396)
T ss_dssp SSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred CceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEec
Confidence 99888765210 01146899999875443332 222 2567899999998876553
No 166
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.77 E-value=3.4e-16 Score=163.11 Aligned_cols=251 Identities=10% Similarity=0.130 Sum_probs=158.8
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc-CCceeeeccC--CCcccccCCCCCcCCCCcCeEEecCCCC
Q 005140 255 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR-TGKVMRDFKG--SADEFAVGGTGGVAGVSWPVFRWGGGKD 331 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~-~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~dg 331 (712)
.+..++|||||++|++++.+ .|.+|++. +|+....... +.... .++|+| ||
T Consensus 41 ~~~~~a~spdg~~l~~~~~~-----------~v~~~~~~~~g~~~~~~~~~~~g~~~--------------~~~~sp-dg 94 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK-----------KWSSFAVKSPTEIVHEASHPIGGHPR--------------ANDADT-NT 94 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT-----------EEEEEEEEETTEEEEEEEEECCSSGG--------------GGCTTS-CC
T ss_pred CCcEEEECCCCCEEEEEccc-----------eEEEEEECCCCCEEEeeEeecCCCCc--------------cEEECC-CC
Confidence 58899999999999888765 69999997 7776543321 11111 478999 99
Q ss_pred CE--EEEe--------------cCCeEEEEEcC-Cceecccccc----cccCeeeEEECCCCCeEEEEeecCCCCCCCeE
Q 005140 332 KY--FAKL--------------GKNMISVYETE-SFTLIDKKSL----KVENVMDFSWSPTDPIISLFVPELGGGNQPAR 390 (712)
Q Consensus 332 ~~--la~~--------------~d~~i~iwd~~-~~~~~~~~~~----~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~ 390 (712)
++ ++++ .++.+.+|++. ++.+...... +...+.+++|+|+|++|++. . .+...
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~-----~-~~~~~ 168 (365)
T 1jof_A 95 RAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA-----D-LTANK 168 (365)
T ss_dssp EEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE-----E-TTTTE
T ss_pred CEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE-----c-CCCCE
Confidence 94 4443 47889999987 4544322211 23457888888888877651 1 11223
Q ss_pred EEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEE
Q 005140 391 VSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFA 470 (712)
Q Consensus 391 i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~ 470 (712)
|++|++.. +|+... ...+.++.|...+..++
T Consensus 169 v~~~~~~~---------------------~g~~~~----------------------------~~~~~~~~~g~~p~~~~ 199 (365)
T 1jof_A 169 LWTHRKLA---------------------SGEVEL----------------------------VGSVDAPDPGDHPRWVA 199 (365)
T ss_dssp EEEEEECT---------------------TSCEEE----------------------------EEEEECSSTTCCEEEEE
T ss_pred EEEEEECC---------------------CCCEEE----------------------------eeeEecCCCCCCCCEeE
Confidence 44444320 111100 00011212345688899
Q ss_pred EeeCCCEEEEEEc-CCCCCeEEEEEeecccccCc--eeEEEEeCCC------------ceeEEE-EccCCCeEEEEeccC
Q 005140 471 WEPKGHRFAVIHG-DSPRPDISFYSMRTAQHAGR--VSKLTTLKGK------------QANALF-WSPSGRFIVLAGLKG 534 (712)
Q Consensus 471 ~sp~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~--~~~~~~~~~~------------~v~~l~-~spdg~~l~~~~~~~ 534 (712)
|+|+|++++++.. ++ .|.+|+++...+... ...+..++.+ .+..++ |||||++|++++.+.
T Consensus 200 ~spdg~~l~v~~~~~~---~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 200 MHPTGNYLYALMEAGN---RICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp ECTTSSEEEEEETTTT---EEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred ECCCCCEEEEEECCCC---eEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 9999999988876 44 899998863222100 0122333221 367899 999999998876522
Q ss_pred CC----ceEEEEECC-cceeee----e-ccccceeeEEECC---CCCEEEEEEccceeccccEEEEEecCcee
Q 005140 535 FN----GQLEFYNVD-ELETMA----T-AEHFMATDVEWDP---TGRYVATAVTSVHEMENGFNIWSFNGKLL 594 (712)
Q Consensus 535 ~d----g~v~iwd~~-~~~~~~----~-~~~~~v~~~~~sp---dg~~l~t~s~~~~~~d~~v~iw~~~g~~~ 594 (712)
+ +.|.+|+++ ++++.. . .+...+..++|+| ||++|++++.. ++.|.||++++..+
T Consensus 277 -~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~----~~~v~v~~~~~~~l 344 (365)
T 1jof_A 277 -KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ----EGWLEIYRWKDEFL 344 (365)
T ss_dssp -STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS----SCEEEEEEEETTEE
T ss_pred -CCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcC----CCeEEEEEEchhhC
Confidence 2 289999986 555432 1 1334567899999 89999998862 48999999986644
No 167
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.76 E-value=4e-16 Score=162.65 Aligned_cols=251 Identities=10% Similarity=0.046 Sum_probs=160.0
Q ss_pred cccceEEEcCCCcEEEEEecCceEEeecccCcceeeeecC---CCeeEEEecCCCCE--EEEEc-------------CCC
Q 005140 214 WTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAH---PQVKLIDFSPGEKY--LVTYS-------------SHE 275 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~---~~v~~i~~Spdg~~--l~t~s-------------~d~ 275 (712)
..+..++|||||++|++++.+.+.+|++..+++......+ ..+.+++|||||++ +++++ .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~- 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA- 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC-
T ss_pred CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC-
Confidence 4678899999999999888878889998523333322221 23667999999995 44543 34
Q ss_pred CCCCcCCCccEEEEEEcc-CCceeeeccC----CCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcC
Q 005140 276 PSNPRDANRVVINIFDVR-TGKVMRDFKG----SADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETE 348 (712)
Q Consensus 276 ~~~~~~~~~~~I~iwd~~-~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~ 348 (712)
+.+.+|++. +|+....+.. +.... ..++|+| ||++++++. ++.|.+|++.
T Consensus 119 ---------g~v~v~~~~~~g~~~~~~~~~~~~~~~~~-------------~~~~~sp-dG~~l~~~~~~~~~v~~~~~~ 175 (365)
T 1jof_A 119 ---------GYGNVFSVSETGKLEKNVQNYEYQENTGI-------------HGMVFDP-TETYLYSADLTANKLWTHRKL 175 (365)
T ss_dssp ---------CEEEEEEECTTCCEEEEEEEEECCTTCCE-------------EEEEECT-TSSEEEEEETTTTEEEEEEEC
T ss_pred ---------ceEEEEccCCCCcCcceEeeEEeCCCCcc-------------eEEEECC-CCCEEEEEcCCCCEEEEEEEC
Confidence 789999996 4665443331 11111 1689999 999887765 7899999998
Q ss_pred -Cceecccccc----cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccce---eeeeeee------e----
Q 005140 349 -SFTLIDKKSL----KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEEL---RQKNLFS------V---- 410 (712)
Q Consensus 349 -~~~~~~~~~~----~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~------~---- 410 (712)
++++...... +..++..++|+|+|++|++. ...++.+.+|.++..+.+.. ....... .
T Consensus 176 ~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~----~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~ 251 (365)
T 1jof_A 176 ASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYAL----MEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETG 251 (365)
T ss_dssp TTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEE----ETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTS
T ss_pred CCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEE----ECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccc
Confidence 6654321112 23458999999999988762 12345566666665443321 1111110 1
Q ss_pred ---cceeEE-ECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEE-ecCCCCceEEEEEee---CCCEEEEEE
Q 005140 411 ---SDCKMY-WQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLE-LDNKNDKIIAFAWEP---KGHRFAVIH 482 (712)
Q Consensus 411 ---~~~~~~-~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-l~~h~~~v~~~~~sp---~g~~l~~~~ 482 (712)
....+. |+|+|++|+++...... ...+.+.+|++...+....... +..+...+..++|+| +|++|+++.
T Consensus 252 ~~~~~~~i~~~spdG~~l~v~~~~~~~---~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~ 328 (365)
T 1jof_A 252 KGLYRADVCALTFSGKYMFASSRANKF---ELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITD 328 (365)
T ss_dssp SBSEEEEEEEECTTSSEEEEEEEESST---TSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEEC
T ss_pred cccccccEEEECCCCCEEEEECCCCCC---CCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEE
Confidence 244678 99999998776543210 0011378999874333222111 323455677899999 899999987
Q ss_pred cC-CCCCeEEEEEeecc
Q 005140 483 GD-SPRPDISFYSMRTA 498 (712)
Q Consensus 483 ~d-~~~~~v~i~d~~~~ 498 (712)
.+ + .|.+|+++..
T Consensus 329 ~~~~---~v~v~~~~~~ 342 (365)
T 1jof_A 329 DQEG---WLEIYRWKDE 342 (365)
T ss_dssp SSSC---EEEEEEEETT
T ss_pred cCCC---eEEEEEEchh
Confidence 75 5 8999998653
No 168
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.75 E-value=3e-16 Score=162.21 Aligned_cols=273 Identities=13% Similarity=0.063 Sum_probs=172.5
Q ss_pred EEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCC--cccccCCCCCcCCCCcCeEEecCCCCCEEE
Q 005140 258 LIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSA--DEFAVGGTGGVAGVSWPVFRWGGGKDKYFA 335 (712)
Q Consensus 258 ~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~dg~~la 335 (712)
.++++++++++++++.+ +.|.+||+.+++.++.+..+. ... .++|+| +|++++
T Consensus 4 g~~~~~~~~~~v~~~~~----------~~v~~~d~~~~~~~~~~~~~~~~~~~--------------~~~~s~-dg~~~~ 58 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYP----------NNLHVVDVASDTVYKSCVMPDKFGPG--------------TAMMAP-DNRTAY 58 (349)
T ss_dssp CCCCCTTCEEEEEEETT----------TEEEEEETTTTEEEEEEECSSCCSSC--------------EEEECT-TSSEEE
T ss_pred cccccCCCEEEEEeCCC----------CeEEEEECCCCcEEEEEecCCCCCCc--------------eeEECC-CCCEEE
Confidence 46789999999999998 899999999999888877654 222 689999 998665
Q ss_pred Ee-c-CCeEEEEEcCCceeccccccc------ccCeeeEEECCCCCeEEEEeec-----CCCCCCCeEEEEEecCCccce
Q 005140 336 KL-G-KNMISVYETESFTLIDKKSLK------VENVMDFSWSPTDPIISLFVPE-----LGGGNQPARVSLVQIPSKEEL 402 (712)
Q Consensus 336 ~~-~-d~~i~iwd~~~~~~~~~~~~~------~~~v~~~~~sp~~~~la~~~~~-----~~~~~~~~~i~~~~~~~~~~~ 402 (712)
.+ . ++.|.+|++.+++.+...... ...+..++|+|+|++|++.... .........|++|++.+.+..
T Consensus 59 v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~ 138 (349)
T 1jmx_B 59 VLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 138 (349)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred EEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence 44 4 899999999988766443322 1237889999999999873211 000001247888888764432
Q ss_pred eeeee--eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCC-C---------------
Q 005140 403 RQKNL--FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKN-D--------------- 464 (712)
Q Consensus 403 ~~~~~--~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~-~--------------- 464 (712)
..... .......+.|+|+|+ +++...+ +.+|++.... ....+.. +. .
T Consensus 139 ~~~~~~~~~~~~~~~~~s~dg~-l~~~~~~-----------i~~~d~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~ 203 (349)
T 1jmx_B 139 KPVRTFPMPRQVYLMRAADDGS-LYVAGPD-----------IYKMDVKTGK-YTVALPL--RNWNRKGYSAPDVLYFWPH 203 (349)
T ss_dssp CCSEEEECCSSCCCEEECTTSC-EEEESSS-----------EEEECTTTCC-EEEEECS--TTCCCTTBCCCBCCCCCCC
T ss_pred ceeeeccCCCcccceeECCCCc-EEEccCc-----------EEEEeCCCCc-eeccccc--cccCCccccCccceeeecC
Confidence 22111 122345567999999 5553221 4455433221 1111111 11 0
Q ss_pred --------ceEEEEEeeCCCEE----------EEEEc-CCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEcc-CC
Q 005140 465 --------KIIAFAWEPKGHRF----------AVIHG-DSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSP-SG 524 (712)
Q Consensus 465 --------~v~~~~~sp~g~~l----------~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg 524 (712)
....+++++++... +.... .+ .+.++++.. .+..+..++|+| +|
T Consensus 204 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-------------~~~~~~~~~~sp~dg 267 (349)
T 1jmx_B 204 QSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG---KTHTQEFAD-------------LTELYFTGLRSPKDP 267 (349)
T ss_dssp CCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTC---CEEEEEEEE-------------CSSCEEEEEECSSCT
T ss_pred CCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCC---cEEeccccc-------------CCCcceeeEecCCCC
Confidence 23445666554211 10111 11 344443311 234578899999 99
Q ss_pred CeEEEEeccCCCceEEEEECCcceeeeec-cccceeeEEECCCCCEEEEEEccceeccccEEEEEecC-ceeee
Q 005140 525 RFIVLAGLKGFNGQLEFYNVDELETMATA-EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG-KLLYR 596 (712)
Q Consensus 525 ~~l~~~~~~~~dg~v~iwd~~~~~~~~~~-~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g-~~~~~ 596 (712)
++++++ ++.|.+||+.+++.+... ....+.+++|+|+|++|++++. ++.+.+|+... +.+..
T Consensus 268 ~~l~~~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-----~~~v~v~d~~~~~~~~~ 331 (349)
T 1jmx_B 268 NQIYGV-----LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGT-----FNDLAVFNPDTLEKVKN 331 (349)
T ss_dssp TEEEEE-----ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESB-----SSEEEEEETTTTEEEEE
T ss_pred CEEEEE-----cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecC-----CCeEEEEeccccceeee
Confidence 999887 479999999998876653 3345789999999999998776 89999999874 44433
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.74 E-value=4.5e-16 Score=161.52 Aligned_cols=288 Identities=13% Similarity=0.166 Sum_probs=178.2
Q ss_pred CeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEec----------Cc-eEEeecccCcceeeeecC------
Q 005140 191 TDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHR----------QG-AAVWGGANTFNRLMRYAH------ 253 (712)
Q Consensus 191 ~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~----------~~-i~iw~~~~~~~~~~~~~~------ 253 (712)
++.+.+|+. ..++....+..+..+ .++|||||++|++++. ++ |.+||.. +.+.+.++..
T Consensus 30 d~~v~v~D~-~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~-t~~~~~~i~~~~~~~~ 105 (361)
T 2oiz_A 30 ESRVHVYDY-TNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD-KLTFEKEISLPPKRVQ 105 (361)
T ss_dssp GCEEEEEET-TTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT-TCCEEEEEEECTTBCC
T ss_pred cCeEEEEEC-CCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECc-CCcEEEEEEcCccccc
Confidence 457778886 455555566666555 8999999999998862 33 7899998 7777766642
Q ss_pred --CCeeEEEecCCCCEEEEEcC--CCCCCCcCCCccEEEEEEccCCceeee-ccCCCcccccCCCCCcCCCCcCeEEecC
Q 005140 254 --PQVKLIDFSPGEKYLVTYSS--HEPSNPRDANRVVINIFDVRTGKVMRD-FKGSADEFAVGGTGGVAGVSWPVFRWGG 328 (712)
Q Consensus 254 --~~v~~i~~Spdg~~l~t~s~--d~~~~~~~~~~~~I~iwd~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 328 (712)
.....++|||||++|+++.. + +.|.+||+.+++.+.. +..... | .+.+.|
T Consensus 106 ~g~~p~~i~~spdg~~l~v~n~~~~----------~~v~v~d~~~~~~~~~~i~~~~~--------------~-~v~~~p 160 (361)
T 2oiz_A 106 GLNYDGLFRQTTDGKFIVLQNASPA----------TSIGIVDVAKGDYVEDVTAAAGC--------------W-SVIPQP 160 (361)
T ss_dssp BCCCGGGEEECTTSSEEEEEEESSS----------EEEEEEETTTTEEEEEEGGGTTE--------------E-EEEECT
T ss_pred cCCCcceEEECCCCCEEEEECCCCC----------CeEEEEECCCCcEEEEEecCCCc--------------c-eeEEcC
Confidence 23778999999999998863 4 7899999999988877 654321 2 145566
Q ss_pred CCC-CEEEEec-CCeEEEEEcCC-ceecccc----ccccc-CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc
Q 005140 329 GKD-KYFAKLG-KNMISVYETES-FTLIDKK----SLKVE-NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE 400 (712)
Q Consensus 329 ~dg-~~la~~~-d~~i~iwd~~~-~~~~~~~----~~~~~-~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~ 400 (712)
++ ..+++.+ ||.+.+|++.. ++..... .++.. ....+.++|++..+++. +.++ .++.++.....
T Consensus 161 -~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~--~v~v~d~~~~~ 232 (361)
T 2oiz_A 161 -NRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFV-----SYYG--NVYSADFSGDE 232 (361)
T ss_dssp -TSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEE-----BTTS--EEEEEECSSSS
T ss_pred -CCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEE-----eCCC--eEEEEEecCCC
Confidence 65 3444444 88888888764 4333110 00110 11123335556555541 1222 34444442211
Q ss_pred ceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecC-CcceeEEEecCCCCceEEEEEeeCCCEEE
Q 005140 401 ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKER-DIPIEVLELDNKNDKIIAFAWEPKGHRFA 479 (712)
Q Consensus 401 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~~l~~h~~~v~~~~~sp~g~~l~ 479 (712)
.. ++ ..|.+... ..... . . ......++++|++++++
T Consensus 233 ~~---------------------~~-----------------~~~~~~~~~~~~~~-~-~---p~g~~~~a~~~dg~~ly 269 (361)
T 2oiz_A 233 VK---------------------VD-----------------GPWSLLNDEDKAKN-W-V---PGGYNLVGLHRASGRMY 269 (361)
T ss_dssp CE---------------------EE-----------------EEEESCCHHHHHTT-C-E---ECCSSCEEEETTTTEEE
T ss_pred ce---------------------ec-----------------ccccccCccccccc-c-c---cCCeeEEEEecCCCeEE
Confidence 00 00 00000000 00000 0 0 01111267899988887
Q ss_pred EEEc-CC-------CCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcc--ee
Q 005140 480 VIHG-DS-------PRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL--ET 549 (712)
Q Consensus 480 ~~~~-d~-------~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~--~~ 549 (712)
++.. ++ ....|.+||+.+.+ .+.++..+....++|+|||++|++++ .+.|.+||..++ ++
T Consensus 270 v~~~~~~~~~~~~~~~~~v~viD~~t~~------~v~~i~~~~p~~ia~spdg~~l~v~n----~~~v~v~D~~t~~l~~ 339 (361)
T 2oiz_A 270 VFMHPDGKEGTHKFPAAEIWVMDTKTKQ------RVARIPGRDALSMTIDQQRNLMLTLD----GGNVNVYDISQPEPKL 339 (361)
T ss_dssp EEEESSCCTTCTTCCCSEEEEEETTTTE------EEEEEECTTCCEEEEETTTTEEEEEC----SSCEEEEECSSSSCEE
T ss_pred EEEccCCCcccccCCCceEEEEECCCCc------EEEEEecCCeeEEEECCCCCEEEEeC----CCeEEEEECCCCccee
Confidence 7654 21 12379999987654 55555533389999999999988776 389999999999 88
Q ss_pred eeec--cccceeeEEECCCCC
Q 005140 550 MATA--EHFMATDVEWDPTGR 568 (712)
Q Consensus 550 ~~~~--~~~~v~~~~~spdg~ 568 (712)
+.+. .......++++|+|+
T Consensus 340 ~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 340 LRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEETTSCSSEEEEEECCCSC
T ss_pred eEEeccCCCCcEEEEecCCCC
Confidence 8773 346678899999996
No 170
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.72 E-value=7.1e-18 Score=132.81 Aligned_cols=80 Identities=45% Similarity=0.785 Sum_probs=73.3
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
+++|||+|||...+++++.++++|+++|++||.|.+ +.|+ +.+|+++|||||+|.++++|.+|++.|||..++++|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~--v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 76 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITN--DFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 76 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEE--EECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEE--EEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCce
Confidence 479999999998888888899999999999999999 9988 358999999999999999999999999999999976
Q ss_pred EEEE
Q 005140 139 IFAV 142 (712)
Q Consensus 139 ~l~v 142 (712)
.++|
T Consensus 77 ~l~V 80 (81)
T 2krb_A 77 TFRV 80 (81)
T ss_dssp CCCC
T ss_pred eEEe
Confidence 6665
No 171
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.71 E-value=1.4e-13 Score=149.95 Aligned_cols=327 Identities=13% Similarity=0.149 Sum_probs=213.7
Q ss_pred CCCcEEEEEecCc-eEEeecccCcceeeeecCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc--CCcee
Q 005140 223 PLGTYLATVHRQG-AAVWGGANTFNRLMRYAHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR--TGKVM 298 (712)
Q Consensus 223 pdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~--~g~~~ 298 (712)
|.+.++++...++ |.++|.. +.+.+.++... .+..+.|||||++|++++.+ +.|.+||+. +++.+
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~-t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~d----------g~V~viD~~~~t~~~v 233 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGS-TYEIKTVLDTGYAVHISRLSASGRYLFVIGRD----------GKVNMIDLWMKEPTTV 233 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETT-TCCEEEEEECSSCEEEEEECTTSCEEEEEETT----------SEEEEEETTSSSCCEE
T ss_pred CCceEEEEeCCCCeEEEEECC-CCeEEEEEeCCCCccceEECCCCCEEEEEcCC----------CeEEEEECCCCCCcEe
Confidence 4445555555566 8899999 88888887655 47899999999999999888 899999995 88888
Q ss_pred eeccCCCcccccCCCCCcCCCCcCeEEec----CCCCCEEEEec--CCeEEEEEcCCceeccccccc-----------cc
Q 005140 299 RDFKGSADEFAVGGTGGVAGVSWPVFRWG----GGKDKYFAKLG--KNMISVYETESFTLIDKKSLK-----------VE 361 (712)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~-----------~~ 361 (712)
..+....... .+.|| | ||++++.+. ++++.|+|..+++.+...... ..
T Consensus 234 ~~i~~G~~P~--------------~ia~s~~~~p-DGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~ 298 (567)
T 1qks_A 234 AEIKIGSEAR--------------SIETSKMEGW-EDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEP 298 (567)
T ss_dssp EEEECCSEEE--------------EEEECCSTTC-TTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCC
T ss_pred EEEecCCCCc--------------eeEEccccCC-CCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCC
Confidence 8877655444 68999 8 999998887 899999999988776543321 12
Q ss_pred CeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeee-cceeEEECcCCCEEEEEEcccccccccccc
Q 005140 362 NVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV-SDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 440 (712)
Q Consensus 362 ~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~ 440 (712)
.+..+..++++..+++.. .....|++++......+....+... ....+.|+|+|++++++.....
T Consensus 299 rva~i~~s~~~~~~vv~~------~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn-------- 364 (567)
T 1qks_A 299 RVAAILASHYRPEFIVNV------KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARN-------- 364 (567)
T ss_dssp CEEEEEECSSSSEEEEEE------TTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGT--------
T ss_pred ceEEEEEcCCCCEEEEEe------cCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCC--------
Confidence 467888899887766532 3345788888765443222221111 1123579999999988775432
Q ss_pred cEEEEEEecCCcceeEEEe---cCCCCceEEEEEeeCCCEEEEEE--cCCCCCeEEEEEeecccc-cCceeEEEEeCCC-
Q 005140 441 GFELFRIKERDIPIEVLEL---DNKNDKIIAFAWEPKGHRFAVIH--GDSPRPDISFYSMRTAQH-AGRVSKLTTLKGK- 513 (712)
Q Consensus 441 ~~~l~~l~~~~~~~~~~~l---~~h~~~v~~~~~sp~g~~l~~~~--~d~~~~~v~i~d~~~~~~-~~~~~~~~~~~~~- 513 (712)
.+.++++... .....+.+ ..|.+.-..+ ++|++..+.+.+ +++ .|.+++..+... ...++.+.++...
T Consensus 365 ~V~ViD~~t~-kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~---~Vsvid~~~~~~~~~~~kvv~~i~~~g 439 (567)
T 1qks_A 365 KLVVIDTKEG-KLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDD---SVALIGTDPEGHPDNAWKILDSFPALG 439 (567)
T ss_dssp EEEEEETTTT-EEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSS---EEEEEECCTTTCTTTBTSEEEEEECSC
T ss_pred eEEEEECCCC-cEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCC---eEEEecCCCCCCccccCEEEEEEecCC
Confidence 1445444332 11222223 1343322233 578765555444 345 899999876321 1123455665532
Q ss_pred -ceeEEEEccCCCeEEEEeccCC----CceEEEEECCcc---------eeeeec-------cccceeeEEECCCCCEEEE
Q 005140 514 -QANALFWSPSGRFIVLAGLKGF----NGQLEFYNVDEL---------ETMATA-------EHFMATDVEWDPTGRYVAT 572 (712)
Q Consensus 514 -~v~~l~~spdg~~l~~~~~~~~----dg~v~iwd~~~~---------~~~~~~-------~~~~v~~~~~spdg~~l~t 572 (712)
.-..+..+|+|++|.+....+. .+.|.+||+.+. +.+... ....+..+.|+|+|+++.+
T Consensus 440 ~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 519 (567)
T 1qks_A 440 GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWF 519 (567)
T ss_dssp SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEE
T ss_pred CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEE
Confidence 2244778999999998763221 359999999877 233211 1357889999999999887
Q ss_pred EEccceeccccEEEEEecCcee
Q 005140 573 AVTSVHEMENGFNIWSFNGKLL 594 (712)
Q Consensus 573 ~s~~~~~~d~~v~iw~~~g~~~ 594 (712)
+.......++.|.|+|.....+
T Consensus 520 s~~~~~~~~~~i~v~D~~t~~~ 541 (567)
T 1qks_A 520 SVWNGKDQESALVVVDDKTLEL 541 (567)
T ss_dssp EEECCTTSCCEEEEEETTTTEE
T ss_pred EeecCCCCCCcEEEEECCCceE
Confidence 7431111168999999764433
No 172
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.71 E-value=4.1e-17 Score=133.25 Aligned_cols=78 Identities=29% Similarity=0.490 Sum_probs=72.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+++|||+|||. +..+++|+++|++||.|.. +.++.|+.+|++||||||+|.++++|.+|++.|||..++++
T Consensus 18 ~gt~lfV~nLp~------~~te~~L~~~F~~~G~I~~--v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr 89 (99)
T 4fxv_A 18 QGTNLIVNYLPQ------NMTQDELRSLFSSIGEVES--AKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSK 89 (99)
T ss_dssp CCSEEEEESCCT------TCCHHHHHHHHHTTSCEEE--EEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCEEE--eEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 478999999997 5558999999999999999 99999999999999999999999999999999999999985
Q ss_pred eEEEEEe
Q 005140 138 HIFAVNM 144 (712)
Q Consensus 138 ~~l~v~~ 144 (712)
.+.|..
T Consensus 90 -~l~V~~ 95 (99)
T 4fxv_A 90 -TIKVSY 95 (99)
T ss_dssp -ECEEEE
T ss_pred -EEEEEE
Confidence 787765
No 173
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.70 E-value=6.6e-16 Score=164.29 Aligned_cols=245 Identities=13% Similarity=0.111 Sum_probs=161.6
Q ss_pred cccceEEEcCCCcEEEEEecCceEEeecccCc----------ce------eeeecCCC-eeEEEecCCCCEEE----EEc
Q 005140 214 WTESFVQWSPLGTYLATVHRQGAAVWGGANTF----------NR------LMRYAHPQ-VKLIDFSPGEKYLV----TYS 272 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~----------~~------~~~~~~~~-v~~i~~Spdg~~l~----t~s 272 (712)
..++.+++|+++.+|++++.++++||+.. .. .. ...+++.. |.+++|||+|++|+ +++
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dgv~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASGLQIFPTK-NLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHH-HHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CCccEEEEecCCCEEEEECCCEEEEEEch-HhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 45789999999999999999998887653 11 01 11233343 99999999999999 788
Q ss_pred CCCCCCCcCCCccEEEEEEccCC--------c---eeeeccCCCcccccCCCCCcCCCCcCeEEecCCC-CCEEEEec-C
Q 005140 273 SHEPSNPRDANRVVINIFDVRTG--------K---VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK-DKYFAKLG-K 339 (712)
Q Consensus 273 ~d~~~~~~~~~~~~I~iwd~~~g--------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d-g~~la~~~-d 339 (712)
.+ +.|+|||+.++ + .++.+.+|...+. +++|+| + +.+|++++ |
T Consensus 116 ~d----------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-------------~v~~~p-~~~~~las~s~D 171 (434)
T 2oit_A 116 YG----------SIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVI-------------DMKWNP-TVPSMVAVCLAD 171 (434)
T ss_dssp TE----------EEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEE-------------EEEECS-SCTTEEEEEETT
T ss_pred CC----------ceEEEEEccccccCCcCCcceeeeeeccCCCCCceE-------------EEEECC-CCCCEEEEEECC
Confidence 88 99999998765 1 1455666666553 799999 8 78999888 9
Q ss_pred CeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeee-------eeecc
Q 005140 340 NMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL-------FSVSD 412 (712)
Q Consensus 340 ~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-------~~~~~ 412 (712)
++|++||+.++..+.....|...|.+++|+|+|++|++ ++.++.+++| +.. ......... +....
T Consensus 172 g~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~las-----gs~dg~v~iw--d~~-~~~~~~~~~~~~~~~~~~~~v 243 (434)
T 2oit_A 172 GSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAV-----GKQNGTVVQY--LPT-LQEKKVIPCPPFYESDHPVRV 243 (434)
T ss_dssp SCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEE-----EETTSCEEEE--CTT-CCEEEEECCCTTCCTTSCEEE
T ss_pred CeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEE-----EcCCCcEEEE--ccC-CcccccccCCcccCCCCceeE
Confidence 99999999987655444446678999999999999999 7777776655 443 121111111 12356
Q ss_pred eeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCc--ceeEEEec-------CCCCceEEEEEeeCCCEEEEEEc
Q 005140 413 CKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDI--PIEVLELD-------NKNDKIIAFAWEPKGHRFAVIHG 483 (712)
Q Consensus 413 ~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~l~-------~h~~~v~~~~~sp~g~~l~~~~~ 483 (712)
..+.|++++.++++....... ......+.+|++..... +.....+. +...+...+.+-++.+++++++.
T Consensus 244 ~~v~w~~~~~~l~~~~~~dg~--~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~ 321 (434)
T 2oit_A 244 LDVLWIGTYVFAIVYAAADGT--LETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASA 321 (434)
T ss_dssp EEEEEEETTEEEEEEEETTCC--SSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEET
T ss_pred EEEEEecCceEEEEEccCCCc--cCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecC
Confidence 678999988887665432110 01112367888875422 22112221 11222233444478888888777
Q ss_pred CCCCCeEEEEEe
Q 005140 484 DSPRPDISFYSM 495 (712)
Q Consensus 484 d~~~~~v~i~d~ 495 (712)
... .|.++..
T Consensus 322 ~s~--dv~vl~~ 331 (434)
T 2oit_A 322 AST--EVSILAR 331 (434)
T ss_dssp TCS--BCEEEEE
T ss_pred CCC--ceeEEEe
Confidence 542 5666664
No 174
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.69 E-value=5.2e-14 Score=145.94 Aligned_cols=312 Identities=11% Similarity=0.049 Sum_probs=185.1
Q ss_pred CCCcEEEEEec------C-ceEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC
Q 005140 223 PLGTYLATVHR------Q-GAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG 295 (712)
Q Consensus 223 pdg~~lat~~~------~-~i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g 295 (712)
+++++++.... + .+.+||.. +++.+.++.......++|||||++|++++.......+....+.|.+||+.++
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~-t~~~~~~i~~g~~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYT-NGKFLGMVPTAFNGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETT-TCCEEEEEECCEEEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCCEEEEECCCCCccccCeEEEEECC-CCeEEEEecCCCCCceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 46777666542 3 37899998 7777777654432399999999999988631000000001168999999999
Q ss_pred ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec---CCeEEEEEcCCceecccccccccCeeeEEECCCC
Q 005140 296 KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG---KNMISVYETESFTLIDKKSLKVENVMDFSWSPTD 372 (712)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~ 372 (712)
+.+..+........ ....+ + .++++| ||++|+.+. +++|.+||+.+++.+... +...+...+.+.|++
T Consensus 92 ~~~~~i~~~~~~~~--~g~~p----~-~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~-i~~~~~~~v~~~p~~ 162 (361)
T 2oiz_A 92 TFEKEISLPPKRVQ--GLNYD----G-LFRQTT-DGKFIVLQNASPATSIGIVDVAKGDYVEDV-TAAAGCWSVIPQPNR 162 (361)
T ss_dssp CEEEEEEECTTBCC--BCCCG----G-GEEECT-TSSEEEEEEESSSEEEEEEETTTTEEEEEE-GGGTTEEEEEECTTS
T ss_pred cEEEEEEcCccccc--cCCCc----c-eEEECC-CCCEEEEECCCCCCeEEEEECCCCcEEEEE-ecCCCcceeEEcCCC
Confidence 98887764321100 00000 1 589999 999998775 589999999988776430 222333335566765
Q ss_pred C-eEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCC
Q 005140 373 P-IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERD 451 (712)
Q Consensus 373 ~-~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~ 451 (712)
. .++. .+.++...++.+ ..+|+.... ....
T Consensus 163 ~~~~~~-----~~~dg~~~~v~~-----------------------~~~g~~~~~--------------------~~~~- 193 (361)
T 2oiz_A 163 PRSFMT-----ICGDGGLLTINL-----------------------GEDGKVASQ--------------------SRSK- 193 (361)
T ss_dssp SSEEEE-----EETTSSEEEEEE-----------------------CTTSSEEEE--------------------EECC-
T ss_pred CeeEEE-----ECCCCcEEEEEE-----------------------CCCCcEeee--------------------cccc-
Confidence 3 3332 112232222111 111111100 0000
Q ss_pred cceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--C----------CceeEEE
Q 005140 452 IPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--G----------KQANALF 519 (712)
Q Consensus 452 ~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~----------~~v~~l~ 519 (712)
..+..+..+ ..+.++|++..+++.+.++ .|.++|+..... ..+..+. . .....++
T Consensus 194 -----~~~~~~~~~-~~~~~~~~g~~~~~~~~~~---~v~v~d~~~~~~----~~~~~~~~~~~~~~~~~~~p~g~~~~a 260 (361)
T 2oiz_A 194 -----QMFSVKDDP-IFIAPALDKDKAHFVSYYG---NVYSADFSGDEV----KVDGPWSLLNDEDKAKNWVPGGYNLVG 260 (361)
T ss_dssp -----CCSCTTTSC-BCSCCEECSSEEEEEBTTS---EEEEEECSSSSC----EEEEEEESCCHHHHHTTCEECCSSCEE
T ss_pred -----ceEcCCCCc-eEEEecccCCEEEEEeCCC---eEEEEEecCCCc----eecccccccCccccccccccCCeeEEE
Confidence 000011111 1234467888877777766 899999854321 1222211 1 0112379
Q ss_pred EccCCCeEEEEeccC--------CCceEEEEECCcceeeeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEec-
Q 005140 520 WSPSGRFIVLAGLKG--------FNGQLEFYNVDELETMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN- 590 (712)
Q Consensus 520 ~spdg~~l~~~~~~~--------~dg~v~iwd~~~~~~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~- 590 (712)
++|+|+.++++...+ ..+.|.+||+.+++.+.+...+.+.+++|+|||++|+++. .+.|.+||..
T Consensus 261 ~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~p~~ia~spdg~~l~v~n------~~~v~v~D~~t 334 (361)
T 2oiz_A 261 LHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRDALSMTIDQQRNLMLTLD------GGNVNVYDISQ 334 (361)
T ss_dssp EETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTTCCEEEEETTTTEEEEEC------SSCEEEEECSS
T ss_pred EecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCCeeEEEECCCCCEEEEeC------CCeEEEEECCC
Confidence 999999888764300 1358999999999988764332289999999999887654 3899999987
Q ss_pred C--ceeeee--cccceeeeEEecCCC
Q 005140 591 G--KLLYRT--LKDHFFQFLWRPRPP 612 (712)
Q Consensus 591 g--~~~~~~--~~~~i~~~~w~p~~~ 612 (712)
+ +.+... .-.....++++|+|.
T Consensus 335 ~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 335 PEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CcceeeEEeccCCCCcEEEEecCCCC
Confidence 5 555553 235678899999986
No 175
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.66 E-value=1.5e-14 Score=163.57 Aligned_cols=259 Identities=10% Similarity=-0.032 Sum_probs=159.0
Q ss_pred CeeEEEecCCCCCCCcccccCCCcccc---------eEEEc--CCCcE-EEEEecCc--eEEeecc----cCcceeeeec
Q 005140 191 TDTEVLWNDARHLKPEPVYKRSYWTES---------FVQWS--PLGTY-LATVHRQG--AAVWGGA----NTFNRLMRYA 252 (712)
Q Consensus 191 ~~~~~~w~~~~~~~~~~~~~~~~~~v~---------~v~~S--pdg~~-lat~~~~~--i~iw~~~----~~~~~~~~~~ 252 (712)
++...+|.. ........+..|...+. .+.|+ |||++ ||+++... |.+|+.. +....+....
T Consensus 46 ~~~~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~ 124 (662)
T 3azo_A 46 AGRATLVRR-RADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVS 124 (662)
T ss_dssp TTEEEEEEE-CTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCC
T ss_pred CCcEEEEEE-CCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCc
Confidence 456678886 33444556677766666 66676 99999 88887644 4455544 1112222211
Q ss_pred ---CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC------Cceeeecc-CCCcccccCCCCCcCCCCc
Q 005140 253 ---HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT------GKVMRDFK-GSADEFAVGGTGGVAGVSW 321 (712)
Q Consensus 253 ---~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~------g~~~~~~~-~~~~~~~~~~~~~~~~~~~ 321 (712)
+. .+.+++|||||++|++++.+............|++||+.+ +.. +.+. .+.....
T Consensus 125 ~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~------------ 191 (662)
T 3azo_A 125 AVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVT------------ 191 (662)
T ss_dssp CSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEEC------------
T ss_pred cCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCccc------------
Confidence 23 3889999999999998876511000012225799999977 554 3443 3322221
Q ss_pred CeEEecCCCCCEEEEec-C--------CeEEEEEcC-Cc---eecccccccccCeeeEEECCCCCeEEEEeecCCCCCCC
Q 005140 322 PVFRWGGGKDKYFAKLG-K--------NMISVYETE-SF---TLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQP 388 (712)
Q Consensus 322 ~~~~~s~~dg~~la~~~-d--------~~i~iwd~~-~~---~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~ 388 (712)
.++||| ||++|++.+ + ..|.+|++. ++ ........+...+..++|+|||+++++ +..++.
T Consensus 192 -~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~-----~~~~~~ 264 (662)
T 3azo_A 192 -GPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVA-----TDRTGW 264 (662)
T ss_dssp -CCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEE-----ECTTSS
T ss_pred -CceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEE-----ECCCCC
Confidence 579999 999998776 4 379999998 56 322211122456889999999995554 445566
Q ss_pred eEEEEEecCCccceeeeeeee--------ecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEec
Q 005140 389 ARVSLVQIPSKEELRQKNLFS--------VSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELD 460 (712)
Q Consensus 389 ~~i~~~~~~~~~~~~~~~~~~--------~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~ 460 (712)
.+||.++....+......... .....+.|+++|..+++... +. ..||.++..+... ..+.
T Consensus 265 ~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~---------~~l~~~d~~~~~~--~~l~ 332 (662)
T 3azo_A 265 WNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA---------AVLGILDPESGEL--VDAA 332 (662)
T ss_dssp CEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS---------CEEEEEETTTTEE--EECC
T ss_pred eEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Cc---------cEEEEEECCCCcE--EEec
Confidence 789999875544222111110 01234677888888777665 44 6888887654433 4455
Q ss_pred CCCCceEEEEEeeCCCEEEEEEc
Q 005140 461 NKNDKIIAFAWEPKGHRFAVIHG 483 (712)
Q Consensus 461 ~h~~~v~~~~~sp~g~~l~~~~~ 483 (712)
.|...+..+ |+++++.+++.+.
T Consensus 333 ~~~~~~~~~-~s~~~~~~~~~~~ 354 (662)
T 3azo_A 333 GPWTEWAAT-LTVSGTRAVGVAA 354 (662)
T ss_dssp SSCCEEEEE-EEEETTEEEEEEE
T ss_pred CCCCeEEEE-EecCCCEEEEEEc
Confidence 666677665 2667776655443
No 176
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.66 E-value=3e-16 Score=130.68 Aligned_cols=80 Identities=14% Similarity=0.176 Sum_probs=72.9
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.++|||+|||. ...+++|+++|++||.|.+ +.|+.|+.||++||||||+|.+.++|++|++.|||..++++
T Consensus 6 ~~~lfV~nL~~------~~te~~L~~~F~~~G~i~~--v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr- 76 (110)
T 3s8s_A 6 LKEVTFARLND------NVRETFLKDMCRKYGEVEE--VEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGN- 76 (110)
T ss_dssp CCEEEEESCCT------TCCHHHHHHHHTTTSCEEE--EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE-
T ss_pred CcEEEEECCCC------CCCHHHHHHHHHhcCCeeE--EEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCe-
Confidence 46999999997 4558999999999999999 99999999999999999999999999999999999999986
Q ss_pred EEEEEeecc
Q 005140 139 IFAVNMFDD 147 (712)
Q Consensus 139 ~l~v~~~~~ 147 (712)
.+.|.....
T Consensus 77 ~i~V~~a~~ 85 (110)
T 3s8s_A 77 IIHAQLDIK 85 (110)
T ss_dssp ECEEEECST
T ss_pred EEEEEECCC
Confidence 788776543
No 177
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.66 E-value=9.4e-15 Score=155.37 Aligned_cols=162 Identities=14% Similarity=0.106 Sum_probs=117.6
Q ss_pred CCcccceEEEcCCCcEEE----EEecCc-eEEeecccCc--------ce---eeee-cCC-CeeEEEecCC-CCEEEEEc
Q 005140 212 SYWTESFVQWSPLGTYLA----TVHRQG-AAVWGGANTF--------NR---LMRY-AHP-QVKLIDFSPG-EKYLVTYS 272 (712)
Q Consensus 212 ~~~~v~~v~~Spdg~~la----t~~~~~-i~iw~~~~~~--------~~---~~~~-~~~-~v~~i~~Spd-g~~l~t~s 272 (712)
+...|++++|||+|++|| +++.++ |+|||+. +. +. +..+ .|. .|.+++|+|+ +.+|++++
T Consensus 91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVR-TFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHH-HHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEcc-ccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 445799999999999999 677777 8899987 33 11 2222 233 5999999998 89999999
Q ss_pred CCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCce
Q 005140 273 SHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFT 351 (712)
Q Consensus 273 ~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~ 351 (712)
.| ++|++||++++..+....+|...+. +++|+| +|++|++++ |+.|++||+. +.
T Consensus 170 ~D----------g~v~iwD~~~~~~~~~~~~~~~~v~-------------~v~wsp-dg~~lasgs~dg~v~iwd~~-~~ 224 (434)
T 2oit_A 170 AD----------GSIAVLQVTETVKVCATLPSTVAVT-------------SVCWSP-KGKQLAVGKQNGTVVQYLPT-LQ 224 (434)
T ss_dssp TT----------SCEEEEEESSSEEEEEEECGGGCEE-------------EEEECT-TSSCEEEEETTSCEEEECTT-CC
T ss_pred CC----------CeEEEEEcCCCcceeeccCCCCcee-------------EEEEcC-CCCEEEEEcCCCcEEEEccC-Cc
Confidence 99 9999999999877666666655543 799999 999999999 9999999998 33
Q ss_pred eccccccc-------ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc
Q 005140 352 LIDKKSLK-------VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 399 (712)
Q Consensus 352 ~~~~~~~~-------~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 399 (712)
.......+ ...|.+++|++++.+++++....+.-.....+.+|++...
T Consensus 225 ~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 225 EKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 22222111 1268999999999888776543211122234556666543
No 178
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.65 E-value=1.4e-14 Score=163.78 Aligned_cols=297 Identities=10% Similarity=-0.042 Sum_probs=175.5
Q ss_pred ccccCCCcccceEEEcCCCcEEEEE--ecCc-eEEeecccCcceeeee-cC-CCee---------EEEec--CCCCE-EE
Q 005140 207 PVYKRSYWTESFVQWSPLGTYLATV--HRQG-AAVWGGANTFNRLMRY-AH-PQVK---------LIDFS--PGEKY-LV 269 (712)
Q Consensus 207 ~~~~~~~~~v~~v~~Spdg~~lat~--~~~~-i~iw~~~~~~~~~~~~-~~-~~v~---------~i~~S--pdg~~-l~ 269 (712)
..+.+|...+..++||+++.++++. +.++ ..||....... ..++ .+ ..+. .+.|+ |||++ |+
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la 95 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA-EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV 95 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC-EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC-cceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence 3567788899999999988777777 3355 66887541332 2222 22 2355 56565 99999 88
Q ss_pred EEcCCCCCCCcCCCccEEEEEEcc--C-CceeeeccC-----CCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-C-
Q 005140 270 TYSSHEPSNPRDANRVVINIFDVR--T-GKVMRDFKG-----SADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-K- 339 (712)
Q Consensus 270 t~s~d~~~~~~~~~~~~I~iwd~~--~-g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d- 339 (712)
+++.. ...|++|++. + +. .+.+.. +.... ..++||| ||++|++++ +
T Consensus 96 ~~~~~---------~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~-------------~~~~~sp-Dg~~l~~~~~~~ 151 (662)
T 3azo_A 96 FTHFG---------DQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRW-------------ADPVLLP-ERGEVWCMAEEF 151 (662)
T ss_dssp EEBTT---------TCCEEEECTTSTTCCC-CEECSCCCCSTTCEEE-------------EEEEEET-TTTEEEEEEEEE
T ss_pred EEECC---------CCeEEEEcCCCCCCCC-CEeccCCccCCCCccc-------------cCcEECC-CCCEEEEEEecc
Confidence 76643 0567777765 2 43 444444 22222 1689999 999999887 5
Q ss_pred ---------CeEEEEEcCC------ceeccccc-ccccCeeeEEECCCCCeEEEEeecCCCC-CCCeEEEEEecC-Ccc-
Q 005140 340 ---------NMISVYETES------FTLIDKKS-LKVENVMDFSWSPTDPIISLFVPELGGG-NQPARVSLVQIP-SKE- 400 (712)
Q Consensus 340 ---------~~i~iwd~~~------~~~~~~~~-~~~~~v~~~~~sp~~~~la~~~~~~~~~-~~~~~i~~~~~~-~~~- 400 (712)
..|.+|++.+ +... ... .+...+..++|||||++|++........ -....||++++. +..
T Consensus 152 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~ 230 (662)
T 3azo_A 152 TGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRF 230 (662)
T ss_dssp CSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCE
T ss_pred cCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcc
Confidence 5899999987 5432 222 2234578899999999998743211000 023678999887 341
Q ss_pred -ceeeeee-eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCc---------eEEE
Q 005140 401 -ELRQKNL-FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDK---------IIAF 469 (712)
Q Consensus 401 -~~~~~~~-~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~---------v~~~ 469 (712)
....... +......+.|+|+|+++++...++. ..||.++..+... ..+..+... +.++
T Consensus 231 ~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~---------~~l~~~~~~~~~~--~~l~~~~~~~~~p~w~~~~~~~ 299 (662)
T 3azo_A 231 ADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGW---------WNLHRVDPATGAA--TQLCRREEEFAGPLWTPGMRWF 299 (662)
T ss_dssp EEEEEEEEETTBCEEEEEECTTSCEEEEECTTSS---------CEEEEECTTTCCE--EESSCCSSBSSCCCCSTTCCSE
T ss_pred cccEEeCCCCCceEcceEECCCCeEEEEECCCCC---------eEEEEEECCCCce--eecccccccccCccccccCceE
Confidence 2222211 1344556789999994444433322 3677766433222 223222222 4578
Q ss_pred EEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--ceeEEEEccCCCeEEEEeccC-CCceEEEEECCc
Q 005140 470 AWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK--QANALFWSPSGRFIVLAGLKG-FNGQLEFYNVDE 546 (712)
Q Consensus 470 ~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~--~v~~l~~spdg~~l~~~~~~~-~dg~v~iwd~~~ 546 (712)
+|+|+++.++++.. + .++||.++...+ .+..+..+ .+..+ |+++++.+++.+.+. ....|+++|+.+
T Consensus 300 ~~~~~~~~~~~~~~-~---~~~l~~~d~~~~-----~~~~l~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~ 369 (662)
T 3azo_A 300 APLANGLIAVVHGK-G---AAVLGILDPESG-----ELVDAAGPWTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVT 369 (662)
T ss_dssp EECTTSCEEEEEBS-S---SCEEEEEETTTT-----EEEECCSSCCEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTT
T ss_pred eEeCCCEEEEEEEc-C---ccEEEEEECCCC-----cEEEecCCCCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 89999998888776 6 677775543222 23444433 34444 267777655543321 124677778776
Q ss_pred ceee
Q 005140 547 LETM 550 (712)
Q Consensus 547 ~~~~ 550 (712)
++..
T Consensus 370 g~~~ 373 (662)
T 3azo_A 370 GRAR 373 (662)
T ss_dssp CCEE
T ss_pred CceE
Confidence 6543
No 179
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.65 E-value=7e-14 Score=144.44 Aligned_cols=271 Identities=13% Similarity=0.099 Sum_probs=166.5
Q ss_pred ccceEEEcCCCcEEEEEec---------Cc-eEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCc
Q 005140 215 TESFVQWSPLGTYLATVHR---------QG-AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANR 284 (712)
Q Consensus 215 ~v~~v~~Spdg~~lat~~~---------~~-i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~ 284 (712)
.+..++| ||++||+... ++ +.+|+.. ++.. ..+ ..+..++|||||++|++++.+.. ...
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~-~~~~-~~l--~~~~~~~~SpDg~~la~~~~~~~-----~~~ 84 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLK-NNAR-RFI--ENATMPRISPDGKKIAFMRANEE-----KKV 84 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETT-TCCE-EEE--ESCEEEEECTTSSEEEEEEEETT-----TTE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCC-CCce-EEc--ccCCCeEECCCCCEEEEEEeccC-----CCc
Confidence 4566778 9999988641 22 6788988 4443 223 56889999999999998875410 012
Q ss_pred cEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-C------------------------
Q 005140 285 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-K------------------------ 339 (712)
Q Consensus 285 ~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d------------------------ 339 (712)
..|++|++.+++.......+. +. .++||| ||+.|++++ +
T Consensus 85 ~~l~~~~~~~g~~~~l~~~~~--~~-------------~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 148 (347)
T 2gop_A 85 SEIWVADLETLSSKKILEAKN--IR-------------SLEWNE-DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFD 148 (347)
T ss_dssp EEEEEEETTTTEEEEEEEESE--EE-------------EEEECT-TSSEEEEEEECCCC---------CCCC--------
T ss_pred ceEEEEECCCCceEEEEcCCC--cc-------------ceeECC-CCCEEEEEEccCCCcCCcEEEcccceeecCccccc
Confidence 468899988877655444333 21 689999 999988876 3
Q ss_pred ---CeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCC--C-CeEEEEEecCCccceeeeeeeeecce
Q 005140 340 ---NMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGN--Q-PARVSLVQIPSKEELRQKNLFSVSDC 413 (712)
Q Consensus 340 ---~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~--~-~~~i~~~~~~~~~~~~~~~~~~~~~~ 413 (712)
..|.+|++.++..+..... . .+..++|+|+| ++++. ....... . ...||.++ ..+ ....... ...
T Consensus 149 ~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~-~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~~-~~~- 219 (347)
T 2gop_A 149 GEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNV-PHREIIPQYFKFWDIYIWE--DGK-EEKMFEK-VSF- 219 (347)
T ss_dssp -CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEE-ECCCSSCCSSCCEEEEEEE--TTE-EEEEEEE-ESE-
T ss_pred CccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEE-ecccccccccccccEEEeC--CCc-eEEeccC-cce-
Confidence 5688999988765322222 2 78899999999 54442 1110001 2 56888888 332 1111111 222
Q ss_pred eEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEe-cCCCCceEE-EEEeeCCCEEEEEEcCCCCCeEE
Q 005140 414 KMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL-DNKNDKIIA-FAWEPKGHRFAVIHGDSPRPDIS 491 (712)
Q Consensus 414 ~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~~h~~~v~~-~~~sp~g~~l~~~~~d~~~~~v~ 491 (712)
..++|+|++|++.+.+... .......||.++ .+. . ..+ ..|...+.+ ++|+ +| .+++++.++ .++
T Consensus 220 -~~~spdg~~l~~~~~~~~~---~~~~~~~l~~~d-~~~-~--~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~---~~~ 286 (347)
T 2gop_A 220 -YAVDSDGERILLYGKPEKK---YMSEHNKLYIYD-GKE-V--MGILDEVDRGVGQAKIKD-GK-VYFTLFEEG---SVN 286 (347)
T ss_dssp -EEEEECSSCEEEEECCSSS---CCCSSCEEEEEC-SSC-E--EESSTTCCSEEEEEEEET-TE-EEEEEEETT---EEE
T ss_pred -eeECCCCCEEEEEEccccC---CccccceEEEEC-CCc-e--EeccccCCcccCCccEEc-Cc-EEEEEecCC---cEE
Confidence 2349999999888765321 001123555555 222 1 222 345677886 9999 88 777777787 899
Q ss_pred EEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceE-EEEECC
Q 005140 492 FYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQL-EFYNVD 545 (712)
Q Consensus 492 i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v-~iwd~~ 545 (712)
|| +.++. ...+.. ....+.+++|+| .++++++. ++.. .+|.++
T Consensus 287 l~-~~~g~----~~~~~~-~~~~v~~~~~s~--~~~~~~~~---~~~~~~l~~~~ 330 (347)
T 2gop_A 287 LY-IWDGE----IKPIAK-GRHWIMGFDVDE--IVVYLKET---ATRLRELFTWD 330 (347)
T ss_dssp EE-EESSS----EEEEEC-SSSEEEEEEESS--SEEEEEEC---SSSCCEEEEES
T ss_pred EE-EcCCc----eEEEec-CCCeEEeeeeeC--cEEEEEcC---CCChHHheEeC
Confidence 99 87322 222221 244688999999 56666654 3332 455444
No 180
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.65 E-value=2.6e-13 Score=147.96 Aligned_cols=342 Identities=9% Similarity=0.032 Sum_probs=210.8
Q ss_pred ceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecc-cCcceeeeecCC-CeeEE
Q 005140 183 DQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGA-NTFNRLMRYAHP-QVKLI 259 (712)
Q Consensus 183 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~-~~~~~~~~~~~~-~v~~i 259 (712)
-.|++..+++.+.+++. ...+.+..+.... ...++.|||||++|++++.++ |.+||.. .+.+.+.++... ....+
T Consensus 168 ~~~V~~~~~~~V~viD~-~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~i 245 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDG-STYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSI 245 (567)
T ss_dssp EEEEEETTTTEEEEEET-TTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEE
T ss_pred eEEEEeCCCCeEEEEEC-CCCeEEEEEeCCC-CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCcee
Confidence 35555666777888888 4555554554332 345899999999999998887 8899983 256666666543 37899
Q ss_pred Eec----CCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCC-CcCCCCcCeEEecCCCCCEE
Q 005140 260 DFS----PGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTG-GVAGVSWPVFRWGGGKDKYF 334 (712)
Q Consensus 260 ~~S----pdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~dg~~l 334 (712)
+|| |||++|++++..+ ++|.|+|..+.+.+..+......+. ... .... ....+..|+ ++..+
T Consensus 246 a~s~~~~pDGk~l~v~n~~~---------~~v~ViD~~t~~~~~~i~~~~~~~~--~~~~~p~~-rva~i~~s~-~~~~~ 312 (567)
T 1qks_A 246 ETSKMEGWEDKYAIAGAYWP---------PQYVIMDGETLEPKKIQSTRGMTYD--EQEYHPEP-RVAAILASH-YRPEF 312 (567)
T ss_dssp EECCSTTCTTTEEEEEEEET---------TEEEEEETTTCCEEEEEECCEECTT--TCCEESCC-CEEEEEECS-SSSEE
T ss_pred EEccccCCCCCEEEEEEccC---------CeEEEEECCCCcEEEEEeccccccc--cccccCCC-ceEEEEEcC-CCCEE
Confidence 999 7999998887652 7899999999998887754321110 000 0000 000466788 76654
Q ss_pred EEe-c-CCeEEEEEcCCceeccccccc-ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeee-eee
Q 005140 335 AKL-G-KNMISVYETESFTLIDKKSLK-VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL-FSV 410 (712)
Q Consensus 335 a~~-~-d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~ 410 (712)
+.. . .|.|.++|..+...+....+. .....++.|+|+|+++++. .....+|..++..+.+.+..... ...
T Consensus 313 vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va------~~~sn~V~ViD~~t~kl~~~i~vgg~~ 386 (567)
T 1qks_A 313 IVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITA------ANARNKLVVIDTKEGKLVAIEDTGGQT 386 (567)
T ss_dssp EEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEE------EGGGTEEEEEETTTTEEEEEEECSSSS
T ss_pred EEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEE------eCCCCeEEEEECCCCcEEEEEeccCcC
Confidence 444 3 799999998754322211121 2236788999999998763 23445678889888765544433 111
Q ss_pred c----ceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCC------cceeEEEecCCCCceEEEEEeeCCCEEEE
Q 005140 411 S----DCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERD------IPIEVLELDNKNDKIIAFAWEPKGHRFAV 480 (712)
Q Consensus 411 ~----~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~------~~~~~~~l~~h~~~v~~~~~sp~g~~l~~ 480 (712)
. ... .++|++..+.+...-+. +.+.+++..... ..+..+.. ....-..+..+|+++++.+
T Consensus 387 Phpg~g~~-~~~p~~g~v~~t~~~g~-------~~Vsvid~~~~~~~~~~~kvv~~i~~--~g~g~~~i~~~p~~~~l~v 456 (567)
T 1qks_A 387 PHPGRGAN-FVHPTFGPVWATSHMGD-------DSVALIGTDPEGHPDNAWKILDSFPA--LGGGSLFIKTHPNSQYLYV 456 (567)
T ss_dssp BCCTTCEE-EEETTTEEEEEEEBSSS-------SEEEEEECCTTTCTTTBTSEEEEEEC--SCSCCCCEECCTTCSEEEE
T ss_pred CCCcccee-eECCCCCcEEEeCCCCC-------CeEEEecCCCCCCccccCEEEEEEec--CCCCCEEEEeCCCCCeEEE
Confidence 1 112 24777665554432111 115666655421 11222232 2222244678999999988
Q ss_pred EEcCCC----CCeEEEEEeeccc--ccCc-eeEEEE-----e--CCCceeEEEEccCCCeEEEEecc--CCCceEEEEEC
Q 005140 481 IHGDSP----RPDISFYSMRTAQ--HAGR-VSKLTT-----L--KGKQANALFWSPSGRFIVLAGLK--GFNGQLEFYNV 544 (712)
Q Consensus 481 ~~~d~~----~~~v~i~d~~~~~--~~~~-~~~~~~-----~--~~~~v~~l~~spdg~~l~~~~~~--~~dg~v~iwd~ 544 (712)
...-++ ..+|.+||+.+.. +... +..+.. + .+..+..+.|+|+|+++.++... ..++.|.++|.
T Consensus 457 ~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~ 536 (567)
T 1qks_A 457 DATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDD 536 (567)
T ss_dssp ECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEET
T ss_pred ecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEEC
Confidence 763221 2389999997651 1111 122211 1 13468899999999998887432 23789999999
Q ss_pred Ccceeeeeccc
Q 005140 545 DELETMATAEH 555 (712)
Q Consensus 545 ~~~~~~~~~~~ 555 (712)
.+++++.....
T Consensus 537 ~t~~~~~~i~~ 547 (567)
T 1qks_A 537 KTLELKHVIKD 547 (567)
T ss_dssp TTTEEEEEECC
T ss_pred CCceEEEEeCC
Confidence 99998876554
No 181
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.65 E-value=5.4e-14 Score=145.28 Aligned_cols=280 Identities=10% Similarity=0.091 Sum_probs=170.4
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCE
Q 005140 254 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 333 (712)
Q Consensus 254 ~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ 333 (712)
..+..++| ||++|+....... ...+...+.|++||+.+++... + .... .++||| ||++
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~-~~~~~~~~~l~~~d~~~~~~~~-l---~~~~--------------~~~~Sp-Dg~~ 72 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKAN-LKDNKYENTIVIENLKNNARRF-I---ENAT--------------MPRISP-DGKK 72 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEE-TTTTEEEEEEEEEETTTCCEEE-E---ESCE--------------EEEECT-TSSE
T ss_pred EEcccceE--CCcEEEEEEeecC-cccCCccceEEEEeCCCCceEE-c---ccCC--------------CeEECC-CCCE
Confidence 34778888 9999887642200 0001112689999998876533 3 1111 589999 9999
Q ss_pred EEEec-C---Ce--EEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCC---------------CC-----CC
Q 005140 334 FAKLG-K---NM--ISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELG---------------GG-----NQ 387 (712)
Q Consensus 334 la~~~-d---~~--i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~---------------~~-----~~ 387 (712)
|++.+ + +. |.+|++.+++........ . +..++|+|+|+.|++...... .+ ..
T Consensus 73 la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 150 (347)
T 2gop_A 73 IAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGE 150 (347)
T ss_dssp EEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------C
T ss_pred EEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCc
Confidence 99887 2 33 777788776644322222 2 889999999999998532100 00 12
Q ss_pred CeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceE
Q 005140 388 PARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKII 467 (712)
Q Consensus 388 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~ 467 (712)
...|+++++...+.+..... . ....+.|+|+| .++++..+.... .......+|.++ .+ ... .+..+ ..+.
T Consensus 151 ~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~--~~~~~~~l~~~d-~~-~~~--~l~~~-~~~~ 220 (347)
T 2gop_A 151 KTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIP--QYFKFWDIYIWE-DG-KEE--KMFEK-VSFY 220 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSC--CSSCCEEEEEEE-TT-EEE--EEEEE-ESEE
T ss_pred cceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccc--cccccccEEEeC-CC-ceE--EeccC-ccee
Confidence 46789999877654233332 3 56677999999 555554331100 000135677777 32 222 23233 4444
Q ss_pred EEEEeeCCCEEEEEEcCCC-----CCeEEEEEeecccccCceeEEEEeCC--CceeE-EEEccCCCeEEEEeccCCCceE
Q 005140 468 AFAWEPKGHRFAVIHGDSP-----RPDISFYSMRTAQHAGRVSKLTTLKG--KQANA-LFWSPSGRFIVLAGLKGFNGQL 539 (712)
Q Consensus 468 ~~~~sp~g~~l~~~~~d~~-----~~~v~i~d~~~~~~~~~~~~~~~~~~--~~v~~-l~~spdg~~l~~~~~~~~dg~v 539 (712)
+ ++|+|++|++++.+.. ...|.+|+ ++. ....... ..+.. +.|+ +| ++++++. ++.+
T Consensus 221 ~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~------~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~---~~~~ 285 (347)
T 2gop_A 221 A--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKE------VMGILDEVDRGVGQAKIKD-GK-VYFTLFE---EGSV 285 (347)
T ss_dssp E--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSC------EEESSTTCCSEEEEEEEET-TE-EEEEEEE---TTEE
T ss_pred e--ECCCCCEEEEEEccccCCccccceEEEEC--CCc------eEeccccCCcccCCccEEc-Cc-EEEEEec---CCcE
Confidence 4 4999999999886531 23677777 322 2222222 35665 8999 88 8888777 8899
Q ss_pred EEEECCcceeeee-ccccceeeEEECCCCCEEEEEEccceeccccE-EEEEec
Q 005140 540 EFYNVDELETMAT-AEHFMATDVEWDPTGRYVATAVTSVHEMENGF-NIWSFN 590 (712)
Q Consensus 540 ~iwd~~~~~~~~~-~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v-~iw~~~ 590 (712)
+|| +.+++.... .+...+.+++|+| +.+++++. ++.. .||.++
T Consensus 286 ~l~-~~~g~~~~~~~~~~~v~~~~~s~--~~~~~~~~-----~~~~~~l~~~~ 330 (347)
T 2gop_A 286 NLY-IWDGEIKPIAKGRHWIMGFDVDE--IVVYLKET-----ATRLRELFTWD 330 (347)
T ss_dssp EEE-EESSSEEEEECSSSEEEEEEESS--SEEEEEEC-----SSSCCEEEEES
T ss_pred EEE-EcCCceEEEecCCCeEEeeeeeC--cEEEEEcC-----CCChHHheEeC
Confidence 999 775554332 3456788999999 66666666 4443 777765
No 182
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.64 E-value=1.5e-16 Score=127.84 Aligned_cols=78 Identities=21% Similarity=0.304 Sum_probs=69.4
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccC-eeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHh-CCCccCC
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIG-VIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKT-NGYKLDR 136 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g-~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~-~~~~~~~ 136 (712)
+++|||+|||. +..+++|+++|++|| .|.+ |.|+.|+.||++||||||+|.+.++|.+|++.+ |+..+++
T Consensus 1 S~~i~v~nLp~------~~te~~l~~~F~~~G~~v~~--v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g 72 (91)
T 2lxi_A 1 SNIVMLRMLPQ------AATEDDIRGQLQSHGVQARE--VRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG 72 (91)
T ss_dssp CCEEEEETCCS------SCCHHHHHHHHHHHTCCCSB--CCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT
T ss_pred CCEEEEeCCCC------CCCHHHHHHHHHHhCCEeEE--EEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC
Confidence 57999999997 555999999999999 8999 999999999999999999999999999999987 4567888
Q ss_pred ceEEEEEee
Q 005140 137 AHIFAVNMF 145 (712)
Q Consensus 137 ~~~l~v~~~ 145 (712)
+ .+.|...
T Consensus 73 r-~i~V~~a 80 (91)
T 2lxi_A 73 Q-KVSMHYS 80 (91)
T ss_dssp E-EEEEECC
T ss_pred E-EEEEEEc
Confidence 5 8888653
No 183
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.63 E-value=3.2e-16 Score=126.09 Aligned_cols=78 Identities=15% Similarity=0.307 Sum_probs=68.5
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCe--eeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCc----
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGV--IKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYK---- 133 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~--v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~---- 133 (712)
++|||+|||. ...++.|+++|++||. |.+ |.+++|+.||++||||||+|.++++|.+|++.|||..
T Consensus 10 ~tlfV~nL~~------~~tee~L~~~F~~~G~i~v~~--v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~ 81 (95)
T 2lkz_A 10 DTIILRNIAP------HTVVDSIMTALSPYASLAVNN--IRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLK 81 (95)
T ss_dssp CEEEEESCCT------TCCHHHHHHHSTTTCCCCGGG--EECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEE
T ss_pred CEEEEeCCCC------cCCHHHHHHHHHhhCCccEEE--EEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCce
Confidence 4899999997 4458999999999996 456 9999999999999999999999999999999999974
Q ss_pred cCCceEEEEEeec
Q 005140 134 LDRAHIFAVNMFD 146 (712)
Q Consensus 134 ~~~~~~l~v~~~~ 146 (712)
++|+ .+.|....
T Consensus 82 i~Gr-~i~V~~Ak 93 (95)
T 2lkz_A 82 IDGK-TIGVDFAK 93 (95)
T ss_dssp ETTE-EEEEEECC
T ss_pred ECCE-EEEEEEcc
Confidence 7885 77777543
No 184
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.60 E-value=3.1e-13 Score=153.82 Aligned_cols=290 Identities=11% Similarity=0.004 Sum_probs=174.1
Q ss_pred cCCCcEEEEEecCc----eEEeeccc-Ccc--eee---eec--CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEE
Q 005140 222 SPLGTYLATVHRQG----AAVWGGAN-TFN--RLM---RYA--HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVIN 288 (712)
Q Consensus 222 Spdg~~lat~~~~~----i~iw~~~~-~~~--~~~---~~~--~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~ 288 (712)
+|+|+++++...++ -.||-... +.. .+. .+. +. .+..++|||||++||+++.... .....|+
T Consensus 80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G-----~~~~~i~ 154 (710)
T 2xdw_A 80 FKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASG-----SDWVTIK 154 (710)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETT-----CSCEEEE
T ss_pred EEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCC-----CceEEEE
Confidence 39999999876543 24554321 222 221 111 21 3789999999999998776510 1113899
Q ss_pred EEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCe----------------EEEEEcCCce
Q 005140 289 IFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNM----------------ISVYETESFT 351 (712)
Q Consensus 289 iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~----------------i~iwd~~~~~ 351 (712)
+||+.+|+.+.....+.... .++||| ||+.|+++. ++. |.+|++.++.
T Consensus 155 v~d~~tg~~~~~~~~~~~~~--------------~~~wsp-Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~ 219 (710)
T 2xdw_A 155 FMKVDGAKELPDVLERVKFS--------------CMAWTH-DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQ 219 (710)
T ss_dssp EEETTTTEEEEEEEEEECSC--------------CEEECT-TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCG
T ss_pred EEECCCCCCCcccccCcccc--------------eEEEEe-CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCc
Confidence 99999998765322221111 589999 999998887 544 9999998765
Q ss_pred ecccccc----cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCC------cc-ceeeeeeeeecceeEEECcC
Q 005140 352 LIDKKSL----KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS------KE-ELRQKNLFSVSDCKMYWQSS 420 (712)
Q Consensus 352 ~~~~~~~----~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~------~~-~~~~~~~~~~~~~~~~~s~~ 420 (712)
....... +...+..+.|||||++|++..... .+....|+++++.. .. .+....... ......|+++
T Consensus 220 ~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~--~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~-~~~~~~~s~d 296 (710)
T 2xdw_A 220 SEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREG--CDPVNRLWYCDLQQESNGITGILKWVKLIDNF-EGEYDYVTNE 296 (710)
T ss_dssp GGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECS--SSSCCEEEEEEGGGSSSSSCSSCCCEEEECSS-SSCEEEEEEE
T ss_pred ccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEcc--CCCccEEEEEECcccccccCCccceEEeeCCC-CcEEEEEecc
Confidence 3211211 122367899999999999854322 22256888888765 32 122222111 1122358999
Q ss_pred CCEEEEEEcccccccccccccEEEEEEecCCcce-eEEEecCCCC--ceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeec
Q 005140 421 GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPI-EVLELDNKND--KIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRT 497 (712)
Q Consensus 421 g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~l~~h~~--~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~ 497 (712)
|+.|++.+.... ....|+.++..+... ....+..|.. .+.+++|++++..+++...++. ..|.+|++.+
T Consensus 297 g~~l~~~s~~~~-------~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~-~~l~~~~~~~ 368 (710)
T 2xdw_A 297 GTVFTFKTNRHS-------PNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVK-NTLQLHDLAT 368 (710)
T ss_dssp TTEEEEEECTTC-------TTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTE-EEEEEEETTT
T ss_pred CCEEEEEECCCC-------CCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCE-EEEEEEECCC
Confidence 999988876432 113455544332210 1123334443 6888999976666666666651 2456666544
Q ss_pred ccccCceeEEEEeC--CCceeEEEEccCCCeEEEEec-cCCCceEEEEECCcce
Q 005140 498 AQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGL-KGFNGQLEFYNVDELE 548 (712)
Q Consensus 498 ~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~-~~~dg~v~iwd~~~~~ 548 (712)
+. .+..+. ...+..++++|+++.+++... ....+.|+.||+.+++
T Consensus 369 g~------~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 369 GA------LLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp CC------EEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CC------EEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 33 233333 346788999999987765432 2246899999998766
No 185
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.59 E-value=3.8e-15 Score=117.93 Aligned_cols=78 Identities=19% Similarity=0.271 Sum_probs=71.1
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceE
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~ 139 (712)
.+|||+|||. +..+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..++++ .
T Consensus 2 ~~l~V~nlp~------~~t~~~l~~~f~~~G~i~~--~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~-~ 72 (83)
T 3md1_A 2 FNLFVGDLNV------NVDDETLRNAFKDFPSYLS--GHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGR-P 72 (83)
T ss_dssp EEEEEECCCT------TCCHHHHHHHHTTSTTEEE--EEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTE-E
T ss_pred eEEEEeCCCC------CCCHHHHHHHHHhcCCeeE--EEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCc-E
Confidence 5899999997 4558999999999999999 99999988999999999999999999999999999999885 7
Q ss_pred EEEEeec
Q 005140 140 FAVNMFD 146 (712)
Q Consensus 140 l~v~~~~ 146 (712)
+.|....
T Consensus 73 l~v~~a~ 79 (83)
T 3md1_A 73 LRINWAA 79 (83)
T ss_dssp CEEEECC
T ss_pred EEEEecC
Confidence 7777644
No 186
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.59 E-value=2.1e-15 Score=115.55 Aligned_cols=74 Identities=18% Similarity=0.184 Sum_probs=66.2
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+.-|||+||+. ...++.|+++|.+||+|.+ +.+.. +||||||+|.++++|.+|++.|||..++++
T Consensus 6 ~~~wL~VgNL~~------~~te~~L~~lF~q~G~V~~--~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr 71 (89)
T 2wbr_A 6 GSSWLLLKNLTA------QIDGPTLRTLCMQHGPLVS--FHPYL------NQGIALCKYTTREEANKAQMALNNCVLANT 71 (89)
T ss_dssp CCCEEEEECCCT------TCCCHHHHHHHHHHSCEEE--EEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccceEEEeCCCc------cCCHHHHHHHHHhhCCEEE--EEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCc
Confidence 367899999997 4448899999999999999 88865 789999999999999999999999999996
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
+++|....
T Consensus 72 -~I~V~~A~ 79 (89)
T 2wbr_A 72 -TIFAESPS 79 (89)
T ss_dssp -EEEEECCC
T ss_pred -EEEEEECC
Confidence 89998765
No 187
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.59 E-value=9.6e-16 Score=123.21 Aligned_cols=77 Identities=12% Similarity=0.081 Sum_probs=67.7
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccC--eeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIG--VIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g--~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
.+|||+|||. +..+++|+++|++|| .|.+ +.++.|+.+|++||||||+|.+.++|.+|++.|||..++++
T Consensus 2 ~~l~V~nL~~------~~t~~~l~~~F~~~G~~~v~~--v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr 73 (90)
T 3p5t_L 2 IALYIGNLTW------WTTDEDLTEAVHSLGVNDILE--IKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ 73 (90)
T ss_dssp --CEEESCCT------TCCHHHHHHHHHTTTCCCCCC--EEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSC
T ss_pred eEEEEeCCCC------CCCHHHHHHHHHHhCCCceEE--EEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCE
Confidence 3799999997 455899999999999 9999 99999999999999999999999999999999999999986
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 74 -~i~V~~~ 80 (90)
T 3p5t_L 74 -NPVVTPS 80 (90)
T ss_dssp -CCEECCC
T ss_pred -EEEEEEC
Confidence 6666653
No 188
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.59 E-value=5.2e-15 Score=120.67 Aligned_cols=80 Identities=26% Similarity=0.501 Sum_probs=72.8
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
+++|||+|||. ...+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 2 ~~~l~V~nLp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~- 72 (96)
T 2x1f_A 2 SRVVYLGSIPY------DQTEEQILDLCSNVGPVIN--LKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSR- 72 (96)
T ss_dssp CSEEEEESCCT------TCCHHHHHHHHHTTSCEEE--EECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTE-
T ss_pred CcEEEEECCCC------CCCHHHHHHHHHhcCCEEE--EEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCe-
Confidence 47999999997 4458999999999999999 99999998999999999999999999999999999999984
Q ss_pred EEEEEeecc
Q 005140 139 IFAVNMFDD 147 (712)
Q Consensus 139 ~l~v~~~~~ 147 (712)
.+.|.....
T Consensus 73 ~l~V~~a~~ 81 (96)
T 2x1f_A 73 FLKCGYSSN 81 (96)
T ss_dssp ECEEEECSC
T ss_pred EEEEEEcCC
Confidence 888877544
No 189
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.58 E-value=5.3e-15 Score=118.32 Aligned_cols=78 Identities=24% Similarity=0.268 Sum_probs=71.2
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
+++|||+|||. ...+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 6 ~~~l~v~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~- 76 (87)
T 3bs9_A 6 HFHVFVGDLSP------EITTAAIAAAFAPFGRISD--ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR- 76 (87)
T ss_dssp CEEEEEESCCT------TCCHHHHHHHHGGGSCEEE--EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE-
T ss_pred ceEEEEeCCCC------CCCHHHHHHHHHhcCCEeE--EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCe-
Confidence 56999999997 4458999999999999999 99999988999999999999999999999999999999985
Q ss_pred EEEEEee
Q 005140 139 IFAVNMF 145 (712)
Q Consensus 139 ~l~v~~~ 145 (712)
.+.|...
T Consensus 77 ~l~v~~a 83 (87)
T 3bs9_A 77 QIRTNWA 83 (87)
T ss_dssp ECEEEEE
T ss_pred EEEEEec
Confidence 7777654
No 190
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.58 E-value=4.6e-15 Score=118.10 Aligned_cols=78 Identities=26% Similarity=0.427 Sum_probs=70.9
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 6 ~~~~l~V~nl~~------~~~~~~l~~~f~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 77 (85)
T 3mdf_A 6 TKRVLYVGGLAE------EVDDKVLHAAFIPFGDITD--IQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR 77 (85)
T ss_dssp CSSEEEEECCCT------TCCHHHHHHHHGGGSCEEE--EECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEECCCC------CCCHHHHHHHHhccCCEEE--EEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 357999999997 4458999999999999999 99999988999999999999999999999999999999885
Q ss_pred eEEEEEe
Q 005140 138 HIFAVNM 144 (712)
Q Consensus 138 ~~l~v~~ 144 (712)
.+.|..
T Consensus 78 -~l~v~~ 83 (85)
T 3mdf_A 78 -TIRVNL 83 (85)
T ss_dssp -ECEEEE
T ss_pred -EEEEEE
Confidence 777654
No 191
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.58 E-value=1.5e-12 Score=148.25 Aligned_cols=254 Identities=8% Similarity=-0.000 Sum_probs=157.9
Q ss_pred eEEecCCCCCEEEEec--CC----eEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCC---------CC
Q 005140 323 VFRWGGGKDKYFAKLG--KN----MISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGG---------NQ 387 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~--d~----~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~---------~~ 387 (712)
.++||| ||++||.+. +| .|++||+.+++.+... .....+..++|+|||+.|++........ ..
T Consensus 129 ~~~~SP-Dg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~-~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~ 206 (710)
T 2xdw_A 129 GYAFSE-DGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-LERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNL 206 (710)
T ss_dssp EEEECT-TSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-EEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCC
T ss_pred EEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCccc-ccCcccceEEEEeCCCEEEEEEECCccccccccccccCC
Confidence 689999 999999876 23 8999999998866432 2222367899999999999843322000 12
Q ss_pred CeEEEEEecCCccce--e--eeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEec------CCcceeEE
Q 005140 388 PARVSLVQIPSKEEL--R--QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKE------RDIPIEVL 457 (712)
Q Consensus 388 ~~~i~~~~~~~~~~~--~--~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~------~~~~~~~~ 457 (712)
...|+++++.+.... . ...........+.|+|+|++|++.+.+... ....+.++++.. ..... .
T Consensus 207 ~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~----~~~~l~~~d~~~~~~~~~~~~~~--~ 280 (710)
T 2xdw_A 207 HQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCD----PVNRLWYCDLQQESNGITGILKW--V 280 (710)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSS----SCCEEEEEEGGGSSSSSCSSCCC--E
T ss_pred CCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCC----CccEEEEEECcccccccCCccce--E
Confidence 456888888765421 1 111111223467899999999998764320 012244455443 11122 3
Q ss_pred EecCCCCceEEEEEeeCCCEEEEEEcCC-CCCeEEEEEeecccccCceeEEEEeCC-CceeEEEEccCCCeEEEEeccCC
Q 005140 458 ELDNKNDKIIAFAWEPKGHRFAVIHGDS-PRPDISFYSMRTAQHAGRVSKLTTLKG-KQANALFWSPSGRFIVLAGLKGF 535 (712)
Q Consensus 458 ~l~~h~~~v~~~~~sp~g~~l~~~~~d~-~~~~v~i~d~~~~~~~~~~~~~~~~~~-~~v~~l~~spdg~~l~~~~~~~~ 535 (712)
.+..+...+.. .|+|+|+.|++.+..+ +...|.+|++.++... .+..+..-.. ..+..++|++++.+++++..
T Consensus 281 ~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~--- 355 (710)
T 2xdw_A 281 KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES-KWKVLVPEHEKDVLEWVACVRSNFLVLCYLH--- 355 (710)
T ss_dssp EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGG-GCEEEECCCSSCEEEEEEEETTTEEEEEEEE---
T ss_pred EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-cceeccCCCCCCeEEEEEEEcCCEEEEEEEE---
Confidence 34445555544 5899999999888743 2447888998654310 1223322212 25778999987777777765
Q ss_pred Cc--eEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 536 NG--QLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 536 dg--~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
++ .|++|++.+++.+.. .+...+..++++|++..|+....+ ....+.+++|++.
T Consensus 356 ~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss-~~~P~~i~~~d~~ 413 (710)
T 2xdw_A 356 DVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTS-FLSPGIIYHCDLT 413 (710)
T ss_dssp TTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEEC-SSCCCEEEEEETT
T ss_pred CCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeC-CCCCCEEEEEECC
Confidence 55 577788856654333 445678889999999877655442 0115678888875
No 192
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=8.4e-15 Score=119.33 Aligned_cols=80 Identities=26% Similarity=0.394 Sum_probs=72.6
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+++|||+|||. ...+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 4 ~~~~l~v~nlp~------~~t~~~l~~~f~~~G~v~~--v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 75 (95)
T 2dnz_A 4 GSSGLYVGSLHF------NITEDMLRGIFEPFGKIDN--IVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGR 75 (95)
T ss_dssp CCCEEEEESCCT------TCCHHHHHHHHTTTSCEEE--EEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCcEEEEeCCCC------CCCHHHHHHHHHhcCCEeE--EEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 357999999997 4558899999999999999 99999998999999999999999999999999999999985
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 76 -~l~V~~a~ 83 (95)
T 2dnz_A 76 -PMRVGHVT 83 (95)
T ss_dssp -CCEEEESS
T ss_pred -EEEEEEcc
Confidence 77777643
No 193
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.9e-15 Score=122.08 Aligned_cols=78 Identities=17% Similarity=0.236 Sum_probs=69.8
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.++|||+|||. +..++.|+++|++||.|.+ |.|+.|+. |++||||||+|.+.++|.+|+. +||..++++
T Consensus 11 ~~~lfV~~Lp~------~~te~~L~~~F~~~G~v~~--v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr- 79 (103)
T 1s79_A 11 NRSVYIKGFPT------DATLDDIKEWLEDKGQVLN--IQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKET- 79 (103)
T ss_dssp GGCEEEECCCT------TCCHHHHHHHHHTSSCEEE--EEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTT-
T ss_pred CCEEEEECCCC------CCCHHHHHHHHhhcCCEEE--EEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCE-
Confidence 46899999997 4558999999999999999 99999996 9999999999999999999999 999999986
Q ss_pred EEEEEeecc
Q 005140 139 IFAVNMFDD 147 (712)
Q Consensus 139 ~l~v~~~~~ 147 (712)
.+.|....+
T Consensus 80 ~l~V~~~~~ 88 (103)
T 1s79_A 80 DLLILFKDD 88 (103)
T ss_dssp TCEEEEHHH
T ss_pred EEEEEEchH
Confidence 777765443
No 194
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=8.9e-15 Score=120.17 Aligned_cols=81 Identities=25% Similarity=0.358 Sum_probs=72.9
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+++|||+|||. ...+++|+++|++||.|.. +.|+.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 7 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (99)
T 1whw_A 7 GSGRLFVRNLSY------TSSEEDLEKLFSAYGPLSE--LHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGR 78 (99)
T ss_dssp SCEEEEEECCCT------TCCHHHHHHHHHTTSCEEE--EECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSC
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCEeE--EEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 356999999997 4448899999999999999 99999999999999999999999999999999999999985
Q ss_pred eEEEEEeecc
Q 005140 138 HIFAVNMFDD 147 (712)
Q Consensus 138 ~~l~v~~~~~ 147 (712)
.+.|.....
T Consensus 79 -~l~V~~a~~ 87 (99)
T 1whw_A 79 -MLHVLPSTI 87 (99)
T ss_dssp -EEEEEECCC
T ss_pred -EEEEEEcCC
Confidence 788877543
No 195
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.56 E-value=7.4e-15 Score=123.92 Aligned_cols=77 Identities=29% Similarity=0.353 Sum_probs=68.7
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
+++|||+|||. +..+++|+++|++||.|.+ +.|+.|+ +.+||||||+|.+.++|.+|++.|||..++++
T Consensus 5 ~~~lfV~nLp~------~~te~~L~~~F~~~G~v~~--v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~- 73 (115)
T 4f25_A 5 SGNIFIKNLDK------SIDNKALYDTFSAFGNILS--CKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDR- 73 (115)
T ss_dssp CCEEEEESCCT------TCCHHHHHHHHGGGSCEEE--EEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTE-
T ss_pred CCEEEECCCCC------CCCHHHHHHHHhccCCEEE--EEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCE-
Confidence 45899999997 4558999999999999999 9999996 55899999999999999999999999999985
Q ss_pred EEEEEeec
Q 005140 139 IFAVNMFD 146 (712)
Q Consensus 139 ~l~v~~~~ 146 (712)
.+.|....
T Consensus 74 ~i~V~~a~ 81 (115)
T 4f25_A 74 KVFVGRFK 81 (115)
T ss_dssp ECEEEESS
T ss_pred EEEEEECC
Confidence 78877643
No 196
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=9.8e-15 Score=120.85 Aligned_cols=80 Identities=24% Similarity=0.424 Sum_probs=72.6
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. |.|+.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 14 ~~~~l~V~nlp~------~~t~~~l~~~f~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (103)
T 2cq0_A 14 DNATIRVTNLSE------DTRETDLQELFRPFGSISR--IYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHL 85 (103)
T ss_dssp SSEEEEEESCCT------TCCHHHHHTTSTTTCCEEE--EEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhCCCeEE--EEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 457999999997 4558999999999999999 99999998999999999999999999999999999999985
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 86 -~l~v~~a~ 93 (103)
T 2cq0_A 86 -ILNVEWAK 93 (103)
T ss_dssp -ECEEEESS
T ss_pred -EEEEEECC
Confidence 78877643
No 197
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.56 E-value=4.3e-15 Score=121.69 Aligned_cols=80 Identities=20% Similarity=0.194 Sum_probs=68.8
Q ss_pred CCEEEECCC----CCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCC----HHH----HHHHH
Q 005140 59 GNIIVVDNL----PVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNT----PQE----AELAK 126 (712)
Q Consensus 59 ~~~~~v~~l----p~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~----~~~----a~~a~ 126 (712)
.+.|||+|| |...+ +..|+.+|++||+|.+ +.++.|++||+++|||||+|.+ +++ |.+|+
T Consensus 2 p~kI~VgnL~~~~~~~tt------e~~Lk~~Fs~fGeV~~--~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi 73 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQ------DISIKNYFKKYGEISH--FEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAV 73 (136)
T ss_dssp CCEEEEEESSSSCCCCCC------HHHHHHHHHTTSCCSE--EEEEECTTTCCEEEEEEEECC------CCHHHHHHHHH
T ss_pred CcEEEEeCCCCCCCCCCC------HHHHHHHHHhcCCeEE--EEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHH
Confidence 368999999 97443 8999999999999999 9999999999999999999996 433 88998
Q ss_pred H--HhCCCccCCceEEEEEeecc
Q 005140 127 E--KTNGYKLDRAHIFAVNMFDD 147 (712)
Q Consensus 127 ~--~~~~~~~~~~~~l~v~~~~~ 147 (712)
. .+||..++|+ .++|+.-.+
T Consensus 74 ~~~~lng~~I~Gr-~irV~ln~~ 95 (136)
T 2j8a_A 74 RKHESSGCFIMGF-KFEVILNKH 95 (136)
T ss_dssp HHTTTTCEEETTE-EEEEEECCT
T ss_pred HHhhhcCCeecCc-EEEEEECcc
Confidence 8 7899999996 898886443
No 198
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.3e-14 Score=120.62 Aligned_cols=81 Identities=23% Similarity=0.307 Sum_probs=73.0
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
.-.++|||+|||. ...+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..+++
T Consensus 13 ~~~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (105)
T 1x5u_A 13 NQDATVYVGGLDE------KVSEPLLWELFLQAGPVVN--THMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG 84 (105)
T ss_dssp CTTTEEEEECCCT------TCCHHHHHHHHHTTSCEEE--EECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS
T ss_pred CCCCEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 3467999999997 4458899999999999999 9999999999999999999999999999999999999998
Q ss_pred ceEEEEEeec
Q 005140 137 AHIFAVNMFD 146 (712)
Q Consensus 137 ~~~l~v~~~~ 146 (712)
+ .+.|....
T Consensus 85 ~-~l~v~~a~ 93 (105)
T 1x5u_A 85 K-PIRVNKAS 93 (105)
T ss_dssp C-BCEEEETT
T ss_pred e-EEEEEECC
Confidence 5 77777643
No 199
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=9.6e-15 Score=118.70 Aligned_cols=78 Identities=22% Similarity=0.316 Sum_probs=71.2
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 15 ~~~~l~V~nlp~------~~t~~~l~~~f~~~G~v~~--v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 86 (94)
T 2e5h_A 15 SKSTVYVSNLPF------SLTNNDLYRIFSKYGKVVK--VTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGR 86 (94)
T ss_dssp CTTSEEEESCCT------TSCHHHHHHHTTTTSCEEE--EEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTE
T ss_pred CCCEEEEECCCC------CCCHHHHHHHHHhcCCeEE--EEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 457999999997 5558899999999999999 99999998999999999999999999999999999999985
Q ss_pred eEEEEEe
Q 005140 138 HIFAVNM 144 (712)
Q Consensus 138 ~~l~v~~ 144 (712)
.+.|..
T Consensus 87 -~l~v~~ 92 (94)
T 2e5h_A 87 -VIKASI 92 (94)
T ss_dssp -EEEEEE
T ss_pred -EEEEEe
Confidence 777764
No 200
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=7.6e-15 Score=119.85 Aligned_cols=80 Identities=29% Similarity=0.328 Sum_probs=72.2
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceE-EEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGL-WMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~-~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
-+++|||+|||. ...+++|+++|++||.|.. + .++.|+.+|+++|||||+|.+.++|.+|++.|||..+++
T Consensus 4 ~~~~l~V~nLp~------~~t~~~l~~~F~~~G~i~~--~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 75 (96)
T 1x5t_A 4 GSSGIFIGNLDP------EIDEKLLYDTFSAFGVILQ--TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN 75 (96)
T ss_dssp CCCEEEEECCCT------TCCHHHHHHHHHTTSCBSS--CCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETT
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCeeE--EEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 367999999997 4458999999999999999 9 999998899999999999999999999999999999988
Q ss_pred ceEEEEEeec
Q 005140 137 AHIFAVNMFD 146 (712)
Q Consensus 137 ~~~l~v~~~~ 146 (712)
+ .+.|....
T Consensus 76 ~-~l~v~~a~ 84 (96)
T 1x5t_A 76 R-PITVSYAF 84 (96)
T ss_dssp E-ECEEEESC
T ss_pred E-EEEEEEec
Confidence 5 77777643
No 201
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.55 E-value=2.5e-14 Score=118.93 Aligned_cols=79 Identities=28% Similarity=0.407 Sum_probs=71.9
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+.+|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 25 ~~~~l~V~nLp~------~~te~~l~~~F~~~G~i~~--v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~ 96 (108)
T 2jrs_A 25 GPMRLYVGSLHF------NITEDMLRGIFEPFGRIES--IQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 96 (108)
T ss_dssp SCEEEEEECCCS------SCCHHHHHHHHTTTSCEEE--EEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 467999999997 4458899999999999999 99999998999999999999999999999999999999986
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 97 -~l~V~~a 103 (108)
T 2jrs_A 97 -PMKVGHV 103 (108)
T ss_dssp -CCEEECS
T ss_pred -EEEEEEc
Confidence 7777654
No 202
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.3e-14 Score=120.11 Aligned_cols=80 Identities=21% Similarity=0.450 Sum_probs=72.7
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.|+.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 12 ~~~~l~V~nLp~------~~t~~~l~~~f~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2dnm_A 12 GMITLKVDNLTY------RTSPDSLRRVFEKYGRVGD--VYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGR 83 (103)
T ss_dssp CCCEEEEESCCT------TCCHHHHHHHHTTTSCEEE--EECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTB
T ss_pred CCeEEEEeCCCC------CCCHHHHHHHHHhcCCEEE--EEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 357999999997 4458999999999999999 99999999999999999999999999999999999999985
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 84 -~l~V~~a~ 91 (103)
T 2dnm_A 84 -ELRVQVAR 91 (103)
T ss_dssp -CCEEEECS
T ss_pred -EEEEEECC
Confidence 77777654
No 203
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.2e-14 Score=118.36 Aligned_cols=79 Identities=25% Similarity=0.382 Sum_probs=71.6
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+++|||+|||. ...+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 14 ~~~~l~v~nlp~------~~t~~~l~~~f~~~G~v~~--v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (95)
T 2cqc_A 14 PNCCLGVFGLSL------YTTERDLREVFSKYGPIAD--VSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 85 (95)
T ss_dssp GGGCEEEESCCS------SCCHHHHHHHHHTTSCEEE--EEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEECCCC------CCCHHHHHHHHHhcCCeeE--EEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 457999999997 4448899999999999999 99999999999999999999999999999999999999985
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 86 -~l~v~~a 92 (95)
T 2cqc_A 86 -RIRVSGP 92 (95)
T ss_dssp -EEEEECC
T ss_pred -EEEEEec
Confidence 7777654
No 204
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2.3e-14 Score=117.67 Aligned_cols=79 Identities=24% Similarity=0.334 Sum_probs=71.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.|+.|+.+|+++|||||+|.+.++|.+|++ |||..++++
T Consensus 9 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~ 79 (99)
T 2dgs_A 9 KSNKIFVGGIPH------NCGETELREYFKKFGVVTE--VVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGK 79 (99)
T ss_dssp SCCEEEEESCCS------SCCHHHHHHHHSSSSCEEE--EEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSC
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCe
Confidence 457999999997 4458899999999999999 9999999999999999999999999999998 999999885
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 80 -~l~V~~a~ 87 (99)
T 2dgs_A 80 -KVEVKRAE 87 (99)
T ss_dssp -BCEEEECC
T ss_pred -EEEEEECC
Confidence 77777643
No 205
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.55 E-value=1.1e-14 Score=129.47 Aligned_cols=79 Identities=15% Similarity=0.117 Sum_probs=71.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccC--eeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIG--VIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g--~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 135 (712)
-.++|||+|||. +..+++|+++|++|| .|.+ +.++.|+.+|++||||||+|.+.++|.+|++.|||..++
T Consensus 54 ~~~~lfVgnLp~------~~te~~L~~~F~~~G~i~v~~--v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~ 125 (156)
T 3n9u_C 54 RRAAVYVGSFSW------WTTDQQLIQVIRSIGVYDVVE--LKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN 125 (156)
T ss_dssp --CEEEEECCCT------TCCHHHHHHHHHHTTCCCEEE--EEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHHHCCccEEE--EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 357999999997 555899999999999 9999 999999999999999999999999999999999999999
Q ss_pred CceEEEEEee
Q 005140 136 RAHIFAVNMF 145 (712)
Q Consensus 136 ~~~~l~v~~~ 145 (712)
++ .+.|...
T Consensus 126 Gr-~l~V~~a 134 (156)
T 3n9u_C 126 GE-KVDVRPA 134 (156)
T ss_dssp TE-ECEEEEC
T ss_pred Ce-EeEEEEc
Confidence 85 7887764
No 206
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.9e-14 Score=119.90 Aligned_cols=79 Identities=30% Similarity=0.388 Sum_probs=71.7
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+++|||+|||. ...+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 22 ~~~~l~V~nlp~------~~t~~~l~~~f~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 93 (106)
T 1p27_B 22 EGWILFVTGVHE------EATEEDIHDKFAEYGEIKN--IHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 93 (106)
T ss_dssp TBEEEEEECCCT------TCCHHHHHHHHGGGSCEEE--EEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHhccCCeEE--EEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCc
Confidence 467999999997 4448899999999999999 99999999999999999999999999999999999999985
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 94 -~l~V~~a 100 (106)
T 1p27_B 94 -PISVDWC 100 (106)
T ss_dssp -BCEEEES
T ss_pred -EEEEEee
Confidence 7777653
No 207
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.54 E-value=4.6e-14 Score=119.44 Aligned_cols=81 Identities=23% Similarity=0.240 Sum_probs=73.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. |.|+.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 14 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (115)
T 2dgo_A 14 NHFHVFVGDLSP------EITTEDIKAAFAPFGRISD--ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 85 (115)
T ss_dssp TCEEEEEESCCT------TCCHHHHHHHHGGGSCEEE--EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred CCcEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 457999999997 4458999999999999999 99999988999999999999999999999999999999985
Q ss_pred eEEEEEeecc
Q 005140 138 HIFAVNMFDD 147 (712)
Q Consensus 138 ~~l~v~~~~~ 147 (712)
.+.|.....
T Consensus 86 -~l~V~~a~~ 94 (115)
T 2dgo_A 86 -QIRTNWATR 94 (115)
T ss_dssp -ECEEEESSC
T ss_pred -EEEEEEccC
Confidence 788777543
No 208
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.54 E-value=3.9e-13 Score=152.59 Aligned_cols=289 Identities=11% Similarity=-0.023 Sum_probs=167.5
Q ss_pred EEcCCCcEEEEEecCc----eEEeec--ccC-cceeeeec-----CC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccE
Q 005140 220 QWSPLGTYLATVHRQG----AAVWGG--ANT-FNRLMRYA-----HP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVV 286 (712)
Q Consensus 220 ~~Spdg~~lat~~~~~----i~iw~~--~~~-~~~~~~~~-----~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~ 286 (712)
..+|+|+++++...++ -.||-. .+. .+.+.... |. .+..++|||||++||.+.... +.....
T Consensus 74 ~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~-----G~~~~~ 148 (695)
T 2bkl_A 74 TPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPN-----AADEAV 148 (695)
T ss_dssp CCEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEET-----TCSCCE
T ss_pred CCEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCC-----CCceEE
Confidence 3458999999887543 345643 312 12222211 22 388999999999999654331 011168
Q ss_pred EEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCe-------------EEEEEcCCcee
Q 005140 287 INIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNM-------------ISVYETESFTL 352 (712)
Q Consensus 287 I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~-------------i~iwd~~~~~~ 352 (712)
|++||+.+|+.+......... ...++||| ||+.|++++ +.. |.+|++.++..
T Consensus 149 i~v~dl~tg~~~~~~~~~~~~-------------~~~~~wsp-Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~ 214 (695)
T 2bkl_A 149 LHVIDVDSGEWSKVDVIEGGK-------------YATPKWTP-DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPS 214 (695)
T ss_dssp EEEEETTTCCBCSSCCBSCCT-------------TCCCEECT-TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGG
T ss_pred EEEEECCCCCCcCCcccCccc-------------ccceEEec-CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCch
Confidence 999999998865111111000 01589999 999998887 554 99999987653
Q ss_pred cccccc----cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEE
Q 005140 353 IDKKSL----KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKV 428 (712)
Q Consensus 353 ~~~~~~----~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~ 428 (712)
...... +...+..+.|||||++|++.... ......||+++.+..... .............| ++|. +++.+
T Consensus 215 ~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~---~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~~~~-~~g~-l~~~s 288 (695)
T 2bkl_A 215 KDTVVHERTGDPTTFLQSDLSRDGKYLFVYILR---GWSENDVYWKRPGEKDFR-LLVKGVGAKYEVHA-WKDR-FYVLT 288 (695)
T ss_dssp GCEEEECCCCCTTCEEEEEECTTSCCEEEEEEE---TTTEEEEEEECTTCSSCE-EEEECSSCCEEEEE-ETTE-EEEEE
T ss_pred hceEEEecCCCCEEEEEEEECCCCCEEEEEEeC---CCCceEEEEEcCCCCceE-EeecCCCceEEEEe-cCCc-EEEEE
Confidence 221111 22357889999999999874221 114568888876544322 11112222333445 6777 66665
Q ss_pred cccccccccccccEEEEEEecCCcce-eEEEecCC--CCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCcee
Q 005140 429 DRYTKTKKSTYTGFELFRIKERDIPI-EVLELDNK--NDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVS 505 (712)
Q Consensus 429 ~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~l~~h--~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~ 505 (712)
+... ....|+.++..+... ....+..| ...+.+++|+ ++..+++...++ ..+||.++....
T Consensus 289 ~~~~-------~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg---~~~l~~~~~~g~----- 352 (695)
T 2bkl_A 289 DEGA-------PRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDA---TSEVRVATLKGK----- 352 (695)
T ss_dssp CTTC-------TTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETT---EEEEEEEETTCC-----
T ss_pred CCCC-------CCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECC---EEEEEEEeCCCC-----
Confidence 5321 112455444322110 01222222 4567888888 666666666677 666766542111
Q ss_pred EEEEeC---CCceeEEEEccCCCeEEEEec-cCCCceEEEEECCccee
Q 005140 506 KLTTLK---GKQANALFWSPSGRFIVLAGL-KGFNGQLEFYNVDELET 549 (712)
Q Consensus 506 ~~~~~~---~~~v~~l~~spdg~~l~~~~~-~~~dg~v~iwd~~~~~~ 549 (712)
....+. ...+..++++|+|+.+++... ....++|++||+.+++.
T Consensus 353 ~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 353 PVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred eeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 233333 335678889999987775432 22368999999987654
No 209
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.54 E-value=1.9e-14 Score=121.47 Aligned_cols=80 Identities=25% Similarity=0.419 Sum_probs=72.3
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.++.|+ +|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 6 ~~~~l~V~nLp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~ 76 (116)
T 2fy1_A 6 HPGKLFIGGLNR------ETNEKMLKAVFGKHGPISE--VLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGK 76 (116)
T ss_dssp SCCEEEEECCTT------TCCHHHHHHHHHTSSCCSE--EEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSS
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCEEE--EEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 457999999997 4558999999999999999 9999999 999999999999999999999999999999986
Q ss_pred eEEEEEeecc
Q 005140 138 HIFAVNMFDD 147 (712)
Q Consensus 138 ~~l~v~~~~~ 147 (712)
.+.|.....
T Consensus 77 -~l~V~~a~~ 85 (116)
T 2fy1_A 77 -AIKVEQAKK 85 (116)
T ss_dssp -BCEEEECCC
T ss_pred -EEEEEECCC
Confidence 788876543
No 210
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.7e-14 Score=119.16 Aligned_cols=79 Identities=25% Similarity=0.383 Sum_probs=71.9
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.++|||+|||. +..+++|+++|++||.|.. +.++.|+.+++++|||||+|.+.++|.+|++.|||..++++
T Consensus 12 ~~~l~v~nLp~------~~t~~~l~~~f~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~- 82 (102)
T 1x5s_A 12 EGKLFVGGLSF------DTNEQSLEQVFSKYGQISE--VVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGR- 82 (102)
T ss_dssp CSEEEEESCCT------TCCHHHHHHHHHHHSCCCE--EEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSC-
T ss_pred CCEEEEECCCC------CCCHHHHHHHHHhcCCeEE--EEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCe-
Confidence 56999999997 4558999999999999999 99999999999999999999999999999999999999885
Q ss_pred EEEEEeec
Q 005140 139 IFAVNMFD 146 (712)
Q Consensus 139 ~l~v~~~~ 146 (712)
.+.|....
T Consensus 83 ~l~v~~a~ 90 (102)
T 1x5s_A 83 QIRVDQAG 90 (102)
T ss_dssp CCEEEEEE
T ss_pred EEEEEECC
Confidence 77777654
No 211
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.54 E-value=8.6e-12 Score=129.27 Aligned_cols=271 Identities=7% Similarity=0.039 Sum_probs=160.5
Q ss_pred eEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEec----------Cc-eEEeecccCcceeeeecCC-------
Q 005140 193 TEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHR----------QG-AAVWGGANTFNRLMRYAHP------- 254 (712)
Q Consensus 193 ~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~----------~~-i~iw~~~~~~~~~~~~~~~------- 254 (712)
++.+++. ..++.+..+.....+ .+++||||++|+.+.. ++ |.+||.. +.+.+.++...
T Consensus 48 ~v~v~D~-~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~-t~~~~~~i~~~~~~~~~~ 123 (373)
T 2mad_H 48 QQWVLDA-GSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV-TFLPIADIELPDAPRFDV 123 (373)
T ss_pred EEEEEEC-CCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC-CCcEEEEEECCCcccccc
Confidence 4556766 344444444433333 8999999999998862 33 7799998 77777665432
Q ss_pred --CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeee-ccCCCcccccCCCCCcCCCCcCeEEecCCCC
Q 005140 255 --QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRD-FKGSADEFAVGGTGGVAGVSWPVFRWGGGKD 331 (712)
Q Consensus 255 --~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg 331 (712)
....+.|||||++|++++... ...|.++| .+++.+.. +.... ++.+.| ++
T Consensus 124 g~~p~~~~~spDG~~l~v~n~~~--------~~~v~viD-~t~~~~~~~i~~~~-----------------~~~~~~-~~ 176 (373)
T 2mad_H 124 GPYSWMNANTPNNADLLFFQFAA--------GPAVGLVV-QGGSSDDQLLSSPT-----------------CYHIHP-GA 176 (373)
T ss_pred CCCccceEECCCCCEEEEEecCC--------CCeEEEEE-CCCCEEeEEcCCCc-----------------eEEEEe-CC
Confidence 256899999999999887420 05799999 99998887 65432 233344 44
Q ss_pred C--EEEEecCCeEEEEEcCCceeccccc---cccc--C-eeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcccee
Q 005140 332 K--YFAKLGKNMISVYETESFTLIDKKS---LKVE--N-VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELR 403 (712)
Q Consensus 332 ~--~la~~~d~~i~iwd~~~~~~~~~~~---~~~~--~-v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~ 403 (712)
. +++.+.||.+.+++. +++.+.... .... . .....+.+++..+++ .+. ...++.++........
T Consensus 177 ~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-----~~~--~~~v~vid~~~~~~~v 248 (373)
T 2mad_H 177 PSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVW-----PVY--SGKILQADISAAGATN 248 (373)
T ss_pred CceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEE-----EcC--CceEEEEeccCCcceE
Confidence 3 344444999999999 776552211 0011 1 122345566555444 111 2245555543221100
Q ss_pred eeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEc
Q 005140 404 QKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG 483 (712)
Q Consensus 404 ~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~ 483 (712)
. .-|.+...... .... .......++++|++++++++..
T Consensus 249 ~--------------------------------------~~~~~~~~~~~--~~~~--~p~g~~~~~~s~d~~~lyV~~~ 286 (373)
T 2mad_H 249 K--------------------------------------APIDALSGGRK--ADTW--RPGGWQQVAYLKSSDGIYLLTS 286 (373)
T ss_pred e--------------------------------------eeeeecCCccc--ccce--ecCceEeEEECCCCCEEEEEec
Confidence 0 00000000000 0000 0223344678899888887654
Q ss_pred CC-------CCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCC-eEEEEeccCCCceEEEEECCcceeeee
Q 005140 484 DS-------PRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGR-FIVLAGLKGFNGQLEFYNVDELETMAT 552 (712)
Q Consensus 484 d~-------~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~-~l~~~~~~~~dg~v~iwd~~~~~~~~~ 552 (712)
.+ ..+.|.++|+.+.. .+.++. ++...+++|+|||+ .++++..+ ++.|.+||..+++.+.+
T Consensus 287 ~~~~~~~~~~~~~V~VID~~t~~------vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~--~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 287 EQSAWKLHAAAKEVTSVTGLVGQ------TSSQISLGHDVDAISVAQDGGPDLYALSAG--TEVLHIYDAGAGDQDQS 356 (373)
T ss_pred cCCcccccCCCCeEEEEECCCCE------EEEEEECCCCcCeEEECCCCCeEEEEEcCC--CCeEEEEECCCCCEEee
Confidence 21 12379999986654 455555 34579999999999 66665521 78999999999988766
No 212
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.54 E-value=1.9e-12 Score=132.54 Aligned_cols=258 Identities=12% Similarity=0.100 Sum_probs=155.3
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCC--------------cCCCccEEEEEEccCCceeeeccCCC-cccccCCCCCcCCC
Q 005140 255 QVKLIDFSPGEKYLVTYSSHEPSNP--------------RDANRVVINIFDVRTGKVMRDFKGSA-DEFAVGGTGGVAGV 319 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~d~~~~~--------------~~~~~~~I~iwd~~~g~~~~~~~~~~-~~~~~~~~~~~~~~ 319 (712)
.+.+++++|+|+.+++...+..-.. .....+.|.+||..+|+.++.+.... ... .
T Consensus 25 ~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p--------~-- 94 (329)
T 3fvz_A 25 QVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLP--------H-- 94 (329)
T ss_dssp CEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSE--------E--
T ss_pred CceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCc--------e--
Confidence 4777777777777666554410000 00011469999998899877654221 111 1
Q ss_pred CcCeEEecCCCCCEEEEec-CCeEEEEEcCCce-ecccc---------cccccCeeeEEECC-CCCeEEEEeecCCCCCC
Q 005140 320 SWPVFRWGGGKDKYFAKLG-KNMISVYETESFT-LIDKK---------SLKVENVMDFSWSP-TDPIISLFVPELGGGNQ 387 (712)
Q Consensus 320 ~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~-~~~~~---------~~~~~~v~~~~~sp-~~~~la~~~~~~~~~~~ 387 (712)
.+++++ +|+++++.. ++.|.+|+..... .+... ..+......++++| ++.++++ .+ ..
T Consensus 95 ---gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~-----d~-~~ 164 (329)
T 3fvz_A 95 ---GLSIDT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVS-----DG-YC 164 (329)
T ss_dssp ---EEEECT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEE-----EC-SS
T ss_pred ---EEEECC-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEE-----eC-CC
Confidence 589999 999887777 8999999976431 22211 12233578999999 6776665 21 12
Q ss_pred CeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceE
Q 005140 388 PARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKII 467 (712)
Q Consensus 388 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~ 467 (712)
..+|..| .++|..+......+. +.. ...++-....
T Consensus 165 ~~~I~~~-----------------------~~~g~~~~~~~~~g~------------------~~~----~~~~~~~~p~ 199 (329)
T 3fvz_A 165 NSRIVQF-----------------------SPSGKFVTQWGEESS------------------GSS----PRPGQFSVPH 199 (329)
T ss_dssp CCEEEEE-----------------------CTTSCEEEEECEECC------------------SSS----CCTTEESCEE
T ss_pred CCeEEEE-----------------------cCCCCEEEEeccCCC------------------CCC----CCCcccCCCc
Confidence 3344443 444544332211100 000 0001123467
Q ss_pred EEEEeeCCCEEEEEE-cCCCCCeEEEEEeecccccCceeEEEEeC----CCceeEEEEccCCCeEEEEec----cCCCce
Q 005140 468 AFAWEPKGHRFAVIH-GDSPRPDISFYSMRTAQHAGRVSKLTTLK----GKQANALFWSPSGRFIVLAGL----KGFNGQ 538 (712)
Q Consensus 468 ~~~~sp~g~~l~~~~-~d~~~~~v~i~d~~~~~~~~~~~~~~~~~----~~~v~~l~~spdg~~l~~~~~----~~~dg~ 538 (712)
.++++|++..|+++. .++ .|++|+..++. .+..+. +..+..++|+| |..++..+. +..+..
T Consensus 200 gia~d~~~g~l~v~d~~~~---~I~~~~~~~G~------~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~ 269 (329)
T 3fvz_A 200 SLALVPHLDQLCVADRENG---RIQCFKTDTKE------FVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQ 269 (329)
T ss_dssp EEEEETTTTEEEEEETTTT---EEEEEETTTCC------EEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCC
T ss_pred EEEEECCCCEEEEEECCCC---EEEEEECCCCc------EEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcE
Confidence 899999944444444 455 89999987544 444442 23567899999 433333221 002568
Q ss_pred EEEEECCcceeeeec-----cccceeeEEECCCCCEEEEEEccceeccccEEEEEecCc
Q 005140 539 LEFYNVDELETMATA-----EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGK 592 (712)
Q Consensus 539 v~iwd~~~~~~~~~~-----~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~ 592 (712)
|++|++.+++.+... +...+..++++|+|..+++... ++.|++|++.+.
T Consensus 270 v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~-----~~~I~~~~~~~~ 323 (329)
T 3fvz_A 270 GFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAH-----TNTVWKFTLTEK 323 (329)
T ss_dssp EEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESS-----SCCEEEEEEEEC
T ss_pred EEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECC-----CCEEEEEeCCcc
Confidence 999999988887763 3456889999999966666666 899999998864
No 213
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.54 E-value=2.5e-14 Score=117.30 Aligned_cols=82 Identities=23% Similarity=0.302 Sum_probs=71.5
Q ss_pred cCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeece------EEEeccCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 005140 56 SGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDG------LWMPVDPETQKSLGYCFIEYNTPQEAELAKEKT 129 (712)
Q Consensus 56 ~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~------~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~ 129 (712)
....++|||+|||. +..+++|+++|++||.|.... +.++.|+.+|+++|||||+|.+.++|.+|++.|
T Consensus 10 ~~~~~~l~V~nLp~------~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l 83 (99)
T 2la6_A 10 HSDNNTIFVQGLGE------NVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWF 83 (99)
T ss_dssp CCCCSEEEEECCCS------SCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCC------CCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHh
Confidence 33567999999997 445899999999999987532 789999989999999999999999999999999
Q ss_pred CCCccCCceEEEEEe
Q 005140 130 NGYKLDRAHIFAVNM 144 (712)
Q Consensus 130 ~~~~~~~~~~l~v~~ 144 (712)
||..++++ .+.|..
T Consensus 84 ~g~~~~g~-~l~V~~ 97 (99)
T 2la6_A 84 DGKEFSGN-PIKVSF 97 (99)
T ss_dssp TTCBSSSS-BCEEEE
T ss_pred CCCEeCCc-EEEEEe
Confidence 99999985 777654
No 214
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=9.7e-15 Score=120.68 Aligned_cols=80 Identities=25% Similarity=0.409 Sum_probs=72.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.|+.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 11 ~~~~l~V~nLp~------~~t~~~l~~~f~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 2cqb_A 11 TKRVLYVGGLAE------EVDDKVLHAAFIPFGDITD--IQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR 82 (102)
T ss_dssp CCSCEEEESCCS------SCCHHHHHHHHTTTSCCCC--EECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHhhccCCEEE--EEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 357999999997 4448999999999999999 99999998999999999999999999999999999999985
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 83 -~l~V~~a~ 90 (102)
T 2cqb_A 83 -TIRVNLAK 90 (102)
T ss_dssp -EEEEEECC
T ss_pred -EEEEEeCC
Confidence 88887644
No 215
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=3.4e-14 Score=119.54 Aligned_cols=81 Identities=23% Similarity=0.401 Sum_probs=73.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhC------C
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTN------G 131 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~------~ 131 (712)
-.++|||+|||. ...+++|+++|++||.|.. |.|+.|+.+|+++|||||+|.+.++|.+|++.|| |
T Consensus 14 ~~~~l~V~nLp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~ 85 (111)
T 1x4h_A 14 EGKTVFIRNLSF------DSEEEALGEVLQQFGDLKY--VRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGG 85 (111)
T ss_dssp CCCCEEEESCCT------TCCHHHHHHHHHTTSCEEE--EECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCC
T ss_pred CCCEEEEECCCC------CCCHHHHHHHHHhcCCeEE--EEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCC
Confidence 467999999997 4458999999999999999 9999999999999999999999999999999999 9
Q ss_pred CccCCceEEEEEeecc
Q 005140 132 YKLDRAHIFAVNMFDD 147 (712)
Q Consensus 132 ~~~~~~~~l~v~~~~~ 147 (712)
..++++ .+.|.....
T Consensus 86 ~~~~g~-~l~v~~a~~ 100 (111)
T 1x4h_A 86 LKLDGR-QLKVDLAVT 100 (111)
T ss_dssp EESSSC-EEEEECCCC
T ss_pred cEEcCE-EEEEEECCC
Confidence 999885 888876543
No 216
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.54 E-value=2.2e-14 Score=119.45 Aligned_cols=80 Identities=20% Similarity=0.191 Sum_probs=71.2
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc---
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL--- 134 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~--- 134 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.|+.|+.+|+++|||||+|.+.++|.+|++.|||..+
T Consensus 12 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~ 83 (106)
T 2dgp_A 12 DAIKLFIGQIPR------NLDEKDLKPLFEEFGKIYE--LTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPG 83 (106)
T ss_dssp TCEEEEEESCCT------TCCHHHHHHHHHHHSCCCE--EECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTT
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCeeE--EEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCC
Confidence 457999999997 4458899999999999999 99999999999999999999999999999999999887
Q ss_pred CCceEEEEEeec
Q 005140 135 DRAHIFAVNMFD 146 (712)
Q Consensus 135 ~~~~~l~v~~~~ 146 (712)
.++ .+.|....
T Consensus 84 ~g~-~l~v~~a~ 94 (106)
T 2dgp_A 84 MNR-PIQVKPAD 94 (106)
T ss_dssp CSS-CCEEEECC
T ss_pred CCc-eEEEEECC
Confidence 554 77776654
No 217
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.53 E-value=2.5e-14 Score=114.26 Aligned_cols=77 Identities=17% Similarity=0.326 Sum_probs=68.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+.+|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++ +++..++++
T Consensus 10 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~ 80 (87)
T 3s7r_A 10 DAGKMFVGGLSW------DTSKKDLKDYFTKFGEVVD--CTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGR 80 (87)
T ss_dssp CTTEEEEECCCT------TCCHHHHHHHHTTTSCEEE--EEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhCCCEEE--EEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCE
Confidence 457999999997 4458999999999999999 9999999999999999999999999999996 588888885
Q ss_pred eEEEEEe
Q 005140 138 HIFAVNM 144 (712)
Q Consensus 138 ~~l~v~~ 144 (712)
.+.|..
T Consensus 81 -~i~v~~ 86 (87)
T 3s7r_A 81 -VIDPKK 86 (87)
T ss_dssp -EEEEEE
T ss_pred -EEEEEe
Confidence 776653
No 218
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1.2e-14 Score=119.30 Aligned_cols=79 Identities=24% Similarity=0.342 Sum_probs=70.6
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeee-eceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIK-EDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~-~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
-+++|||+|||. ...+++|+++|++||.|. . +.++.|+.+|+++|||||+|.+.++|.+|++.|||..+++
T Consensus 8 ~~~~l~V~nLp~------~~t~~~l~~~F~~~G~i~~~--v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 79 (99)
T 2div_A 8 MAASLWMGDLEP------YMDENFISRAFATMGETVMS--VKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPG 79 (99)
T ss_dssp SSSEEEECSCCT------TCCHHHHHHHHHHTTCCCCE--EEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESS
T ss_pred CccEEEEeCCCC------CCCHHHHHHHHHHhCCcceE--EEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 467999999997 455899999999999999 9 9999999999999999999999999999999999999988
Q ss_pred ceE---EEEEe
Q 005140 137 AHI---FAVNM 144 (712)
Q Consensus 137 ~~~---l~v~~ 144 (712)
+.. ++|..
T Consensus 80 ~~~~~~l~v~~ 90 (99)
T 2div_A 80 ATPAKRFKLNY 90 (99)
T ss_dssp CSSCEECCEEE
T ss_pred CCcceeEEEee
Confidence 631 55554
No 219
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.53 E-value=2.4e-14 Score=121.18 Aligned_cols=80 Identities=20% Similarity=0.335 Sum_probs=72.6
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+++|+++|++||.|.. +.|+.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 24 ~~~~l~V~nLp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 95 (115)
T 2cpz_A 24 EGANLFIYHLPQ------EFGDQDLLQMFMPFGNVVS--AKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMK 95 (115)
T ss_dssp TTCCEEEESCCS------SCCHHHHHHHHGGGSCCSE--EEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 457999999997 4458999999999999999 99999999999999999999999999999999999999985
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 96 -~l~V~~a~ 103 (115)
T 2cpz_A 96 -RLKVQLKR 103 (115)
T ss_dssp -ECEEECCC
T ss_pred -EEEEEEcC
Confidence 88887643
No 220
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=2.4e-14 Score=117.78 Aligned_cols=79 Identities=20% Similarity=0.372 Sum_probs=71.3
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.++.|+ +|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 16 ~~~~l~v~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 86 (100)
T 2do4_A 16 EKHKLFISGLPF------SCTKEELEEICKAHGTVKD--LRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKEN 86 (100)
T ss_dssp CCSCEEEESCCT------TCCHHHHHHHHTTTSCEEE--EEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSC
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhCCCeEE--EEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 357899999997 4458899999999999999 9999999 999999999999999999999999999999885
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 87 -~l~v~~a~ 94 (100)
T 2do4_A 87 -IIKVAISN 94 (100)
T ss_dssp -EEEEEECC
T ss_pred -EEEEEECC
Confidence 78877643
No 221
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.53 E-value=9.4e-13 Score=134.43 Aligned_cols=300 Identities=10% Similarity=0.107 Sum_probs=180.2
Q ss_pred ccCCCCCceEEEEEC----CeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEec----------Cc-eEEee
Q 005140 176 LTDEKARDQFVIRSG----TDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHR----------QG-AAVWG 240 (712)
Q Consensus 176 ~~~~~~~~~~~~~~~----~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~----------~~-i~iw~ 240 (712)
+..|+++..|+...+ ++.+.+.+. ...+.+..+.-...+ .+++||||++|+.++. ++ |.+||
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~-~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDG-EAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEET-TTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEEC-CCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 445677777777664 556666666 445555555443444 3999999998877652 23 88999
Q ss_pred cccCcceeeeecCC---------CeeEEEecCCCCEEEEEcC--CCCCCCcCCCccEEEEEEccCCceeeeccCCCcccc
Q 005140 241 GANTFNRLMRYAHP---------QVKLIDFSPGEKYLVTYSS--HEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFA 309 (712)
Q Consensus 241 ~~~~~~~~~~~~~~---------~v~~i~~Spdg~~l~t~s~--d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~ 309 (712)
.. +.+.+.++..+ ....+.|||||++|+++.. + +.|.++|+.+++.+.++......
T Consensus 116 ~~-t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~----------~~VsVID~~t~~vv~tI~v~g~~-- 182 (386)
T 3sjl_D 116 PV-TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA----------PAVGVVDLEGKAFKRMLDVPDCY-- 182 (386)
T ss_dssp TT-TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS----------CEEEEEETTTTEEEEEEECCSEE--
T ss_pred CC-CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCC----------CeEEEEECCCCcEEEEEECCCcc--
Confidence 99 88877776422 3678999999999988764 4 68999999999999888654211
Q ss_pred cCCCCCcCCCCcCeEEecCCCCCEEEE-ecCCeEEEEEcCC-ceecccccccc----cCe-eeEEEC-CCCCeEEEEeec
Q 005140 310 VGGTGGVAGVSWPVFRWGGGKDKYFAK-LGKNMISVYETES-FTLIDKKSLKV----ENV-MDFSWS-PTDPIISLFVPE 381 (712)
Q Consensus 310 ~~~~~~~~~~~~~~~~~s~~dg~~la~-~~d~~i~iwd~~~-~~~~~~~~~~~----~~v-~~~~~s-p~~~~la~~~~~ 381 (712)
..+.. ..+.+++ +.||.+.+.++.+ ++......... ..+ ....|. ++|+++.+
T Consensus 183 --------------~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~v---- 243 (386)
T 3sjl_D 183 --------------HIFPT-APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWP---- 243 (386)
T ss_dssp --------------EEEEE-ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEE----
T ss_pred --------------eeecC-CCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEE----
Confidence 12222 2333333 3377777777764 44322111111 111 223553 56654443
Q ss_pred CCCCCCCeEEEEEecCCcc--ceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEe
Q 005140 382 LGGGNQPARVSLVQIPSKE--ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL 459 (712)
Q Consensus 382 ~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 459 (712)
. .+ ..++.++..... .+....++........|.|.
T Consensus 244 -s-~~--g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~--------------------------------------- 280 (386)
T 3sjl_D 244 -T-YT--GKIHQIDLSSGDAKFLPAVEALTEAERADGWRPG--------------------------------------- 280 (386)
T ss_dssp -B-TT--SEEEEEECTTSSCEECCCEESSCHHHHHTTEEEC---------------------------------------
T ss_pred -e-CC--CEEEEEECCCCcceeecceeccccccccccccCC---------------------------------------
Confidence 1 22 356666654332 11111111100000012221
Q ss_pred cCCCCceEEEEEeeCCCEEEEEEcC-------CCCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCC-eEEEE
Q 005140 460 DNKNDKIIAFAWEPKGHRFAVIHGD-------SPRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGR-FIVLA 530 (712)
Q Consensus 460 ~~h~~~v~~~~~sp~g~~l~~~~~d-------~~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~-~l~~~ 530 (712)
....++++|+++++++...+ .+.+.|.++|+.+.+ .+..+. ++.+..++++|||+ +|+++
T Consensus 281 -----g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k------v~~~i~vg~~~~~lavs~D~~~~ly~t 349 (386)
T 3sjl_D 281 -----GWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE------RLAKFEMGHEIDSINVSQDEKPLLYAL 349 (386)
T ss_dssp -----SSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC------EEEEEEEEEEECEEEECSSSSCEEEEE
T ss_pred -----CcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe------EEEEEECCCCcceEEECCCCCeEEEEE
Confidence 22235667888887776531 122378899987655 455554 44688999999997 56664
Q ss_pred eccCCCceEEEEECCcceeeeeccc-cceeeEEECCC
Q 005140 531 GLKGFNGQLEFYNVDELETMATAEH-FMATDVEWDPT 566 (712)
Q Consensus 531 ~~~~~dg~v~iwd~~~~~~~~~~~~-~~v~~~~~spd 566 (712)
.. . ++.|.++|..+++.+.+... ...+.+.+++|
T Consensus 350 n~-~-~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 350 ST-G-DKTLYIHDAESGEELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp ET-T-TTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred cC-C-CCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence 42 1 78999999999999887443 55567777776
No 222
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.53 E-value=7.1e-15 Score=113.72 Aligned_cols=73 Identities=16% Similarity=0.319 Sum_probs=66.2
Q ss_pred EEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEE
Q 005140 61 IIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIF 140 (712)
Q Consensus 61 ~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l 140 (712)
+|||+|||. +..+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|++|++ +||..++++ .+
T Consensus 1 ~l~v~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~-~l 70 (75)
T 2mss_A 1 KIFVGGLSV------NTTVEDVKHYFEQFGKVDD--AMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNK-MV 70 (75)
T ss_dssp CEEEECCCS------SCCHHHHHHHHHTTSCCSE--ECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSC-CC
T ss_pred CEEEecCCC------CCCHHHHHHHHHhcCCEEE--EEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCE-EE
Confidence 489999997 4458999999999999999 9999999999999999999999999999998 999999886 66
Q ss_pred EEE
Q 005140 141 AVN 143 (712)
Q Consensus 141 ~v~ 143 (712)
.|.
T Consensus 71 ~v~ 73 (75)
T 2mss_A 71 ECK 73 (75)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 223
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.53 E-value=7.7e-12 Score=128.18 Aligned_cols=285 Identities=9% Similarity=0.020 Sum_probs=176.2
Q ss_pred cccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEc
Q 005140 214 WTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDV 292 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~ 292 (712)
..+.+++|+|++..++..+.++ +.+|... .... ..-+...+.+++|+|+|+.++++..+ +.|.+||.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~g~l~~~~~~~----------~~i~~~d~ 73 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAE-PWLE-ISKKGLQLEGLNFDRQGQLFLLDVFE----------GNIFKINP 73 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECE-EEEE-EESSCCCEEEEEECTTSCEEEEETTT----------CEEEEECT
T ss_pred cccceeeecCCccceeEEeecccCcccccc-eeEE-EeccCccccCcEECCCCCEEEEECCC----------CEEEEEeC
Confidence 3467789999998887776555 7788333 2111 11133458999999999977788777 88999998
Q ss_pred cCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-C----CeEEEEEcCCceecccc--cccccCeee
Q 005140 293 RTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-K----NMISVYETESFTLIDKK--SLKVENVMD 365 (712)
Q Consensus 293 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d----~~i~iwd~~~~~~~~~~--~~~~~~v~~ 365 (712)
.+++....+..+...+. .++|++ +|+++++.. + +.|.+|+..++...... ......+.+
T Consensus 74 ~~~~~~~~~~~~~~~~~-------------~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 139 (333)
T 2dg1_A 74 ETKEIKRPFVSHKANPA-------------AIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDD 139 (333)
T ss_dssp TTCCEEEEEECSSSSEE-------------EEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEE
T ss_pred CCCcEEEEeeCCCCCcc-------------eEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccc
Confidence 88876544322222221 689999 999887776 4 58999998866543111 112235889
Q ss_pred EEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEE
Q 005140 366 FSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELF 445 (712)
Q Consensus 366 ~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~ 445 (712)
++++|+|++++..... ...+....|+.++....+...... .......+.|+|+|++|+++.... ..+.+|
T Consensus 140 i~~d~~g~l~v~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~i~~~~dg~~l~v~~~~~--------~~i~~~ 209 (333)
T 2dg1_A 140 MVFDSKGGFYFTDFRG-YSTNPLGGVYYVSPDFRTVTPIIQ-NISVANGIALSTDEKVLWVTETTA--------NRLHRI 209 (333)
T ss_dssp EEECTTSCEEEEECCC-BTTBCCEEEEEECTTSCCEEEEEE-EESSEEEEEECTTSSEEEEEEGGG--------TEEEEE
T ss_pred eEECCCCCEEEEeccc-cccCCCceEEEEeCCCCEEEEeec-CCCcccceEECCCCCEEEEEeCCC--------CeEEEE
Confidence 9999999877651100 001235678888865433221111 112234578999999887765421 125667
Q ss_pred EEecCCcceeE------EEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEe--CCC----
Q 005140 446 RIKERDIPIEV------LELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL--KGK---- 513 (712)
Q Consensus 446 ~l~~~~~~~~~------~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~--~~~---- 513 (712)
++...+..... ..+.++ ..+..++++++|+.+++...++ .|.+|+.. +. .+..+ ...
T Consensus 210 d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~---~v~~~d~~-g~------~~~~~~~~~~~~g~ 278 (333)
T 2dg1_A 210 ALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQG---RVLVFNKR-GY------PIGQILIPGRDEGH 278 (333)
T ss_dssp EECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTT---EEEEECTT-SC------EEEEEECTTGGGTC
T ss_pred EecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCC---EEEEECCC-CC------EEEEEEcCCCcccc
Confidence 66533222111 122222 4678899999999887777667 89999873 22 23333 222
Q ss_pred --ceeEEEEccCCCeEEEEeccC---CCceEEEEECC
Q 005140 514 --QANALFWSPSGRFIVLAGLKG---FNGQLEFYNVD 545 (712)
Q Consensus 514 --~v~~l~~spdg~~l~~~~~~~---~dg~v~iwd~~ 545 (712)
.+.+++|+|+|+.|++++... ..+.|.-++..
T Consensus 279 ~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 279 MLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp SCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred ccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 478999999998887666511 12345555544
No 224
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.53 E-value=2.7e-14 Score=119.79 Aligned_cols=79 Identities=30% Similarity=0.420 Sum_probs=71.9
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+++|||+|||. ...+.+|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|+..|||..++++
T Consensus 25 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 96 (110)
T 1oo0_B 25 EGWILFVTSIHE------EAQEDEIQEKFCDYGEIKN--IHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ 96 (110)
T ss_dssp TBEEEEEESCCT------TCCHHHHHHHHGGGSCEEE--EECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCEEE--EEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 467999999997 4448899999999999999 99999999999999999999999999999999999999885
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 97 -~l~V~~a 103 (110)
T 1oo0_B 97 -TIQVDWC 103 (110)
T ss_dssp -ECEEEES
T ss_pred -EEEEEEc
Confidence 7777654
No 225
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=7.1e-15 Score=116.88 Aligned_cols=72 Identities=18% Similarity=0.248 Sum_probs=66.6
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+++|||+|||. ...+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 4 ~~~~l~v~nlp~------~~t~~~l~~~f~~~G~i~~--~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 75 (85)
T 1x4e_A 4 GSSGLYIRGLQP------GTTDQDLVKLCQPYGKIVS--TKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQ 75 (85)
T ss_dssp CCCEEEEESCCT------TCCHHHHHTTSTTTSCEEE--EEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred CCcEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeE
Confidence 357999999997 4458899999999999999 99999998999999999999999999999999999998875
No 226
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.52 E-value=4.1e-14 Score=117.57 Aligned_cols=80 Identities=21% Similarity=0.303 Sum_probs=71.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.|+.|+ +|+++|||||+|.+.++|.+|++.|||..+.+.
T Consensus 14 ~~~~l~v~nLp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg 84 (105)
T 2dnh_A 14 RDRKLFVGMLNK------QQSEEDVLRLFQPFGVIDE--CTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPG 84 (105)
T ss_dssp CCCEEEEESCCT------TCCHHHHHHHHTTTSCEEE--EEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTT
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCC
Confidence 367999999997 4458899999999999999 9999998 899999999999999999999999999998873
Q ss_pred --eEEEEEeec
Q 005140 138 --HIFAVNMFD 146 (712)
Q Consensus 138 --~~l~v~~~~ 146 (712)
+.+.|....
T Consensus 85 ~~~~l~V~~a~ 95 (105)
T 2dnh_A 85 ASSSLVVKFAD 95 (105)
T ss_dssp CSSCCEEEESC
T ss_pred CCccEEEEECc
Confidence 477776643
No 227
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.52 E-value=1.9e-14 Score=115.41 Aligned_cols=78 Identities=27% Similarity=0.428 Sum_probs=70.5
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCC-cccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQK-SLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~-~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
.++|||+|||. +..+++|+++|++||.|.. +.++.|+.++. ++|||||+|.+.++|.+|++.|||..++++
T Consensus 4 ~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 75 (88)
T 4a8x_A 4 PTKVHIGRLTR------NVTKDHIMEIFSTYGKIKM--IDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQ 75 (88)
T ss_dssp CCEEEEECCCT------TCCHHHHHHHHHTTSCEEE--EECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCEEEEeCCCC------CCCHHHHHHHHHhCCCEEE--EEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCe
Confidence 57999999997 4558999999999999999 99999998776 999999999999999999999999999985
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 76 -~l~v~~a 82 (88)
T 4a8x_A 76 -EITATAV 82 (88)
T ss_dssp -ECEEEEE
T ss_pred -EEEEEEC
Confidence 7777654
No 228
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.52 E-value=2.3e-14 Score=115.15 Aligned_cols=77 Identities=12% Similarity=0.154 Sum_probs=70.0
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
+++|||+|||. ...+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|+ .+||..++++
T Consensus 6 ~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~- 75 (89)
T 3ucg_A 6 ARSIYVGNVDY------GATAEELEAHFHGCGSVNR--VTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGR- 75 (89)
T ss_dssp HTEEEEESCCT------TCCHHHHHHHHGGGCCEEE--EEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTE-
T ss_pred CCEEEEeCCCC------CCCHHHHHHHHHhCCCEEE--EEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCc-
Confidence 46999999997 4458999999999999999 999999999999999999999999999999 9999999985
Q ss_pred EEEEEee
Q 005140 139 IFAVNMF 145 (712)
Q Consensus 139 ~l~v~~~ 145 (712)
.+.|...
T Consensus 76 ~l~V~~a 82 (89)
T 3ucg_A 76 QIKVIPK 82 (89)
T ss_dssp ECEEEET
T ss_pred EEEEEEc
Confidence 7777653
No 229
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=2.4e-14 Score=117.31 Aligned_cols=79 Identities=23% Similarity=0.451 Sum_probs=71.0
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCC---CCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPE---TQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~---~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 135 (712)
.++|||+|||. +..+++|+++|++||.|.. +.++.|+. |++++|||||+|.+.++|.+|++.|||..++
T Consensus 5 ~~~l~V~nLp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (98)
T 2cpf_A 5 SSGLFIKNLNF------STTEETLKGVFSKVGAIKS--CTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD 76 (98)
T ss_dssp CCCEEEESCCT------TCCHHHHHHHHHTTSCEEE--EEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEET
T ss_pred CCEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 57999999997 4458999999999999999 99999986 6799999999999999999999999999999
Q ss_pred CceEEEEEeec
Q 005140 136 RAHIFAVNMFD 146 (712)
Q Consensus 136 ~~~~l~v~~~~ 146 (712)
++ .+.|....
T Consensus 77 g~-~l~V~~a~ 86 (98)
T 2cpf_A 77 GH-KLEVRISE 86 (98)
T ss_dssp TE-ECEEECSS
T ss_pred Ce-EEEEEEcc
Confidence 85 78777654
No 230
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.52 E-value=3.3e-14 Score=118.61 Aligned_cols=78 Identities=22% Similarity=0.371 Sum_probs=70.9
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.|+.|+ +|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 28 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 98 (107)
T 3ulh_A 28 TGGKLLVSNLDF------GVSDADIQELFAEFGTLKK--AAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGR 98 (107)
T ss_dssp CSEEEEEESCCT------TCCHHHHHHHHHTTSCEEE--EEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 467999999997 4458999999999999999 9999999 999999999999999999999999999999885
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 99 -~l~V~~a 105 (107)
T 3ulh_A 99 -PMNIQLV 105 (107)
T ss_dssp -ECEEEEE
T ss_pred -EEEEEEe
Confidence 7777653
No 231
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=3.1e-14 Score=121.12 Aligned_cols=79 Identities=22% Similarity=0.429 Sum_probs=67.5
Q ss_pred CCEEEECCCCC-CCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 59 GNIIVVDNLPV-VPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 59 ~~~~~v~~lp~-~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
+++|||+|||. +++ +.|+..|+++|++||.|.+ |.++. +|++||||||+|.+.++|.+|++.|||..+.++
T Consensus 29 ~~~LfV~nL~~~~~e---~~L~~~L~~~F~~~G~I~~--v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr 100 (127)
T 2a3j_A 29 SQVVLITNINPEVPK---EKLQALLYALASSQGDILD--IVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN 100 (127)
T ss_dssp CSEEEEESCCTTSCH---HHHHHHHHHHHHHHSCEEE--EEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHHHhccCCCeEE--EEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 57999999995 443 4566677899999999998 88764 689999999999999999999999999999986
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 101 -~l~V~~a~ 108 (127)
T 2a3j_A 101 -PLVITFSE 108 (127)
T ss_dssp -CCEEEECC
T ss_pred -EEEEEEcc
Confidence 77777644
No 232
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=5.7e-14 Score=117.21 Aligned_cols=80 Identities=24% Similarity=0.378 Sum_probs=72.2
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEecc-CCCCCcccEEEEEeCCHHHHHHHHHHh-CCCccC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVD-PETQKSLGYCFIEYNTPQEAELAKEKT-NGYKLD 135 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d-~~~~~~~g~~fv~~~~~~~a~~a~~~~-~~~~~~ 135 (712)
-.++|||+|||. ...+.+|+++|++||.|.. |.|+.| +.+|+++|||||+|.+.++|.+|++.| ||..+.
T Consensus 14 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~ 85 (107)
T 2cph_A 14 TTSKILVRNIPF------QANQREIRELFSTFGELKT--VRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY 85 (107)
T ss_dssp CCCCEEEESCCT------TCCHHHHHHHHHTTSCEEE--EECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS
T ss_pred CCCEEEEeCCCC------cCCHHHHHHHHHccCCeEE--EEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC
Confidence 457999999997 4458899999999999999 999999 889999999999999999999999999 999999
Q ss_pred CceEEEEEeec
Q 005140 136 RAHIFAVNMFD 146 (712)
Q Consensus 136 ~~~~l~v~~~~ 146 (712)
++ .+.|....
T Consensus 86 g~-~l~v~~a~ 95 (107)
T 2cph_A 86 GR-RLVLEWAD 95 (107)
T ss_dssp SC-BCEEEECC
T ss_pred CC-EEEEEeCC
Confidence 85 77777644
No 233
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.52 E-value=3e-14 Score=115.98 Aligned_cols=78 Identities=19% Similarity=0.271 Sum_probs=69.9
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.|+.|+ +|+++|||||+|.++++|.+|++.|||..++++
T Consensus 15 ~~~~l~v~nlp~------~~~~~~l~~~F~~~G~i~~--v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (95)
T 2ywk_A 15 ADRTVFVGNLEA------RVREEILYELFLQAGPLTK--VTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGR 85 (95)
T ss_dssp GGGEEEEECCCT------TCCHHHHHHHHGGGSCEEE--EEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEECCCC------CCCHHHHHHHHHhcCCEEE--EEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCC
Confidence 356999999997 4448899999999999999 9999999 599999999999999999999999999999985
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 86 -~l~V~~a 92 (95)
T 2ywk_A 86 -PINVSGP 92 (95)
T ss_dssp -ECEEECC
T ss_pred -EEEEEEc
Confidence 7777653
No 234
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=4.8e-14 Score=118.89 Aligned_cols=80 Identities=24% Similarity=0.296 Sum_probs=72.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeee--------eceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIK--------EDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKT 129 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~--------~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~ 129 (712)
-.++|||+|||. ...+++|+++|++||.|. . +.|+.|+.+|+++|||||+|.+.++|.+|++.|
T Consensus 14 ~~~~l~V~nLp~------~~t~~~l~~~F~~~G~i~~~~~~~~~~--v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 85 (113)
T 2cpe_A 14 DNSAIYVQGLND------SVTLDDLADFFKQCGVVKMNKRTGQPM--IHIYLDKETGKPKGDATVSYEDPPTAKAAVEWF 85 (113)
T ss_dssp CCCEEEEECCCT------TCCHHHHHHHHTTTSCBCBCSSSCCBS--EECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHH
T ss_pred CCCEEEEcCCCC------CCCHHHHHHHHHhcCCEeEccccCccC--EEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHc
Confidence 467999999997 445889999999999998 6 999999889999999999999999999999999
Q ss_pred CCCccCCceEEEEEeec
Q 005140 130 NGYKLDRAHIFAVNMFD 146 (712)
Q Consensus 130 ~~~~~~~~~~l~v~~~~ 146 (712)
||..+.++ .+.|....
T Consensus 86 ~g~~~~g~-~l~V~~a~ 101 (113)
T 2cpe_A 86 DGKDFQGS-KLKVSLAR 101 (113)
T ss_dssp TTCEETTE-ECEEECSS
T ss_pred CCCccCCC-EEEEEECC
Confidence 99999985 78887654
No 235
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.51 E-value=1.4e-14 Score=118.07 Aligned_cols=78 Identities=17% Similarity=0.115 Sum_probs=70.7
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.++|||+|||. +..+++|+++|++||.|.. +.++.|+.+|+++|||||+|.++++|.+|++.|||..++++
T Consensus 15 ~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr- 85 (95)
T 2ek1_A 15 PTVIKVQNMPF------TVSIDEILDFFYGYQVIPG--SVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR- 85 (95)
T ss_dssp CEEEEEECCCT------TCCHHHHHHHTTTSCBCTT--CCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE-
T ss_pred CCEEEEeCCCC------CCCHHHHHHHHHhcCCccc--eEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCc-
Confidence 46999999997 5558999999999999998 88999998999999999999999999999999999999985
Q ss_pred EEEEEee
Q 005140 139 IFAVNMF 145 (712)
Q Consensus 139 ~l~v~~~ 145 (712)
.+.|...
T Consensus 86 ~l~v~~a 92 (95)
T 2ek1_A 86 KVKLSGP 92 (95)
T ss_dssp ECEEECC
T ss_pred EEEEEec
Confidence 7777653
No 236
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.51 E-value=2.9e-14 Score=122.56 Aligned_cols=79 Identities=25% Similarity=0.413 Sum_probs=71.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+++|||+|||. +..+++|+++|++||.|.. |.++.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 45 ~~~~l~V~nLp~------~~te~~L~~~F~~~G~I~~--v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~ 116 (129)
T 2kxn_B 45 PNCCLGVFGLSL------YTTERDLREVFSKYGPIAD--VSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 116 (129)
T ss_dssp CSSCBCEETCTT------SCCHHHHHHHHTTTSCEEE--EEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 467999999997 4448899999999999999 99999999999999999999999999999999999999986
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 117 -~l~V~~a 123 (129)
T 2kxn_B 117 -RIRVDFS 123 (129)
T ss_dssp -CCEESCC
T ss_pred -EEEEEEe
Confidence 6766653
No 237
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.1e-14 Score=119.24 Aligned_cols=79 Identities=28% Similarity=0.417 Sum_probs=71.6
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.++|||+|||. ...+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 8 ~~~l~V~nlp~------~~~~~~l~~~f~~~G~i~~--~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~- 78 (104)
T 1p1t_A 8 LRSVFVGNIPY------EATEEQLKDIFSEVGPVVS--FRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGR- 78 (104)
T ss_dssp HSCEEEESCCT------TSCHHHHHHHHHTTSCCSE--EEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSS-
T ss_pred ccEEEEeCCCC------cCCHHHHHHHHHhcCCeeE--EEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCc-
Confidence 36899999997 4558999999999999999 99999998999999999999999999999999999999885
Q ss_pred EEEEEeec
Q 005140 139 IFAVNMFD 146 (712)
Q Consensus 139 ~l~v~~~~ 146 (712)
.+.|....
T Consensus 79 ~l~v~~a~ 86 (104)
T 1p1t_A 79 ALRVDNAA 86 (104)
T ss_dssp CBEEEETT
T ss_pred EEEEEeCC
Confidence 77777644
No 238
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.51 E-value=2.7e-14 Score=121.53 Aligned_cols=78 Identities=19% Similarity=0.355 Sum_probs=70.9
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+++|+++|++||.|.. +.|+.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 39 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 110 (118)
T 2khc_A 39 EGCNLFIYHLPQ------EFTDTDLASTFLPFGNVIS--AKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTK 110 (118)
T ss_dssp CSEEEEEECSCT------TCCHHHHHHHTTTSCEEEE--EEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCEEE--EEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 467999999997 4458999999999999999 99999998999999999999999999999999999999985
Q ss_pred eEEEEEe
Q 005140 138 HIFAVNM 144 (712)
Q Consensus 138 ~~l~v~~ 144 (712)
.++|..
T Consensus 111 -~l~V~~ 116 (118)
T 2khc_A 111 -RLKVQL 116 (118)
T ss_dssp -ECCEEE
T ss_pred -EEEEEe
Confidence 676654
No 239
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.51 E-value=6.7e-13 Score=150.61 Aligned_cols=256 Identities=11% Similarity=-0.043 Sum_probs=151.5
Q ss_pred CCCcccceEEEcCCCcEEEEEec-----Cc-eEEeecccCcceeeeecCCCe--eEEEecCCCCEEEEEcCCCCCC---C
Q 005140 211 RSYWTESFVQWSPLGTYLATVHR-----QG-AAVWGGANTFNRLMRYAHPQV--KLIDFSPGEKYLVTYSSHEPSN---P 279 (712)
Q Consensus 211 ~~~~~v~~v~~Spdg~~lat~~~-----~~-i~iw~~~~~~~~~~~~~~~~v--~~i~~Spdg~~l~t~s~d~~~~---~ 279 (712)
+|.+.+..++|||||++||++.. +. |++||+. +++.+.......+ ..++|||||+.|++++.+.... .
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~-tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD-SGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT-TCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC-CCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccc
Confidence 56678999999999999996542 23 7899999 6654411122233 7899999999999998763200 0
Q ss_pred cCCCccEEEEEEccCCc----eeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CC----eEEEEEcCCc
Q 005140 280 RDANRVVINIFDVRTGK----VMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KN----MISVYETESF 350 (712)
Q Consensus 280 ~~~~~~~I~iwd~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~----~i~iwd~~~~ 350 (712)
.......|++|++.++. ++.....+.... + .+.||| ||++|+..+ ++ .|.+|+..++
T Consensus 197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~------------~-~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~ 262 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTF------------L-QSDLSR-DGKYLFVYILRGWSENDVYWKRPGEK 262 (695)
T ss_dssp GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCE------------E-EEEECT-TSCCEEEEEEETTTEEEEEEECTTCS
T ss_pred cCCCCCEEEEEECCCCchhceEEEecCCCCEEE------------E-EEEECC-CCCEEEEEEeCCCCceEEEEEcCCCC
Confidence 00112469999998876 232222232222 1 589999 999988777 44 5666665544
Q ss_pred eecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccc--eeeeeee--eecceeEEECcCCCEEEE
Q 005140 351 TLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE--LRQKNLF--SVSDCKMYWQSSGDYLAV 426 (712)
Q Consensus 351 ~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~--~~~~~~~~~s~~g~~l~~ 426 (712)
... ....+...+....| |+|. +++... . .....+|+.+++.+... ....... ......+.|+ ++..+++
T Consensus 263 ~~~-~l~~~~~~~~~~~~-~~g~-l~~~s~-~--~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~ 335 (695)
T 2bkl_A 263 DFR-LLVKGVGAKYEVHA-WKDR-FYVLTD-E--GAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLE 335 (695)
T ss_dssp SCE-EEEECSSCCEEEEE-ETTE-EEEEEC-T--TCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEE
T ss_pred ceE-EeecCCCceEEEEe-cCCc-EEEEEC-C--CCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEE
Confidence 322 22233445566666 6666 544211 1 22467888998865432 1111111 1112334566 4555555
Q ss_pred EEcccccccccccccEEEEEEecCCcceeEEEecCC-CCceEEEEEeeCCCEEEEEEcC-CCCCeEEEEEeeccc
Q 005140 427 KVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNK-NDKIIAFAWEPKGHRFAVIHGD-SPRPDISFYSMRTAQ 499 (712)
Q Consensus 427 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h-~~~v~~~~~sp~g~~l~~~~~d-~~~~~v~i~d~~~~~ 499 (712)
...++. ..||.++..+.... .+..+ .+.+..++++|+++.+++.... ....+|++||+.++.
T Consensus 336 ~~~dg~---------~~l~~~~~~g~~~~--~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 336 YLKDAT---------SEVRVATLKGKPVR--TVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEETTE---------EEEEEEETTCCEEE--ECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEECCE---------EEEEEEeCCCCeeE--EecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 555544 57777764443322 23323 5678889999999887766542 111278899986643
No 240
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=1.1e-14 Score=113.40 Aligned_cols=75 Identities=19% Similarity=0.341 Sum_probs=66.9
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceE
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~ 139 (712)
++|||+|||. +..+++|+++|++||.|.. +.++.|+.+|+++|||||+|.++++|.+|++.+| ..++++ .
T Consensus 1 ~~l~v~nlp~------~~t~~~l~~~F~~~G~v~~--v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~-~ 70 (77)
T 1uaw_A 1 CKMFIGGLSW------QTTQEGLREYFGQFGEVKE--CLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSK-T 70 (77)
T ss_dssp CCEEEESCCS------SCCSHHHHHHHTTTSCCCC--EEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSC-C
T ss_pred CEEEEeCCCC------CCCHHHHHHHHHhcCCEEE--EEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCE-E
Confidence 4799999996 4447889999999999999 9999999899999999999999999999999999 888885 6
Q ss_pred EEEEe
Q 005140 140 FAVNM 144 (712)
Q Consensus 140 l~v~~ 144 (712)
+.|..
T Consensus 71 l~v~~ 75 (77)
T 1uaw_A 71 IDPKV 75 (77)
T ss_dssp CEEEE
T ss_pred EEEEe
Confidence 66653
No 241
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=1.6e-14 Score=118.33 Aligned_cols=79 Identities=18% Similarity=0.103 Sum_probs=71.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 14 ~~~~l~v~nLp~------~~t~~~l~~~F~~~G~v~~--~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 85 (98)
T 2cqp_A 14 GPTIIKVQNMPF------TVSIDEILDFFYGYQVIPG--SVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR 85 (98)
T ss_dssp SSEEEEEESCCT------TCCHHHHHHHTTTSCCCTT--TCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHHcCCccc--eEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 356999999997 5558999999999999988 88999988999999999999999999999999999999985
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 86 -~l~V~~a 92 (98)
T 2cqp_A 86 -KVKLVLG 92 (98)
T ss_dssp -ECEEEES
T ss_pred -EEEEEEc
Confidence 7777764
No 242
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4.9e-14 Score=114.64 Aligned_cols=75 Identities=15% Similarity=0.186 Sum_probs=65.7
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHH----HHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIR----KIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~----~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~ 134 (712)
.++|||+|||. +..+++|+ ++|++||.|.+ +.|+.|+.+ ||||||+|.+.++|.+|++.|||..+
T Consensus 9 ~~~l~V~nL~~------~~~~~~l~~~l~~~F~~~G~v~~--v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~ 77 (96)
T 2dgx_A 9 GADVQVSNIDY------RLSRKELQQLLQEAFARHGKVKS--VELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKI 77 (96)
T ss_dssp CEEEEEESCCT------TSCHHHHHHHHHHHHHHHSCEEE--EEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEE
T ss_pred CCEEEEECCCC------CCCHHHHHHHHHHhccccCcEEE--EEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 46999999996 33355666 99999999999 999999855 89999999999999999999999999
Q ss_pred CCceEEEEEee
Q 005140 135 DRAHIFAVNMF 145 (712)
Q Consensus 135 ~~~~~l~v~~~ 145 (712)
+++ .++|...
T Consensus 78 ~gr-~l~V~~a 87 (96)
T 2dgx_A 78 GSK-KILVSLA 87 (96)
T ss_dssp TTE-EEEEEEC
T ss_pred CCe-EEEEEEc
Confidence 985 8888764
No 243
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.50 E-value=8.5e-12 Score=127.87 Aligned_cols=277 Identities=8% Similarity=0.007 Sum_probs=172.8
Q ss_pred CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCC
Q 005140 253 HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK 332 (712)
Q Consensus 253 ~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~ 332 (712)
...|.++.|+|++..++..+.+ +.++.| .+.....+..+..... .++|++ +|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~---~~~~~~~~~~~~~~~~-------------~~~~~~-~g~ 57 (333)
T 2dg1_A 5 QQDLPTLFYSGKSNSAVPIISE----------SELQTI---TAEPWLEISKKGLQLE-------------GLNFDR-QGQ 57 (333)
T ss_dssp -CCCCBCCSCGGGGCSSCCCCG----------GGSCEE---ECEEEEEEESSCCCEE-------------EEEECT-TSC
T ss_pred ccccceeeecCCccceeEEeec----------ccCccc---ccceeEEEeccCcccc-------------CcEECC-CCC
Confidence 3457889999998888777666 677888 3444555544332221 689999 999
Q ss_pred EEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCC--CCeEEEEEecCCccceeee--ee
Q 005140 333 YFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGN--QPARVSLVQIPSKEELRQK--NL 407 (712)
Q Consensus 333 ~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~--~~ 407 (712)
++++.. ++.|.+|+..++............+.+++|+|+|++++. ...+ ....|+.|+.......... ..
T Consensus 58 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~-----~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 132 (333)
T 2dg1_A 58 LFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVC-----YLGDFKSTGGIFAATENGDNLQDIIEDLS 132 (333)
T ss_dssp EEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEE-----ECTTSSSCCEEEEECTTSCSCEEEECSSS
T ss_pred EEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEE-----eCCCCCCCceEEEEeCCCCEEEEEEccCc
Confidence 777766 889999999877654322123456899999999987765 2222 2256888887665432111 11
Q ss_pred eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEc-CCC
Q 005140 408 FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG-DSP 486 (712)
Q Consensus 408 ~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~-d~~ 486 (712)
.......+.++|+|..+++...... ......||.+...+.....+. .+...+..++|+|+|++++++.. ++
T Consensus 133 ~~~~~~~i~~d~~g~l~v~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~- 204 (333)
T 2dg1_A 133 TAYCIDDMVFDSKGGFYFTDFRGYS-----TNPLGGVYYVSPDFRTVTPII--QNISVANGIALSTDEKVLWVTETTAN- 204 (333)
T ss_dssp SCCCEEEEEECTTSCEEEEECCCBT-----TBCCEEEEEECTTSCCEEEEE--EEESSEEEEEECTTSSEEEEEEGGGT-
T ss_pred cCCcccceEECCCCCEEEEeccccc-----cCCCceEEEEeCCCCEEEEee--cCCCcccceEECCCCCEEEEEeCCCC-
Confidence 1223445788999986665432110 001246777765433222221 12345788999999997776654 45
Q ss_pred CCeEEEEEeecc-cccCce--eEEEEeCC-CceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeec--ccc----
Q 005140 487 RPDISFYSMRTA-QHAGRV--SKLTTLKG-KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATA--EHF---- 556 (712)
Q Consensus 487 ~~~v~i~d~~~~-~~~~~~--~~~~~~~~-~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~--~~~---- 556 (712)
.|.+|++.+. ...... .....+.+ ..+..++++++|+++++... ++.|.+||.+ ++.+... +..
T Consensus 205 --~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~---~~~v~~~d~~-g~~~~~~~~~~~~~g~ 278 (333)
T 2dg1_A 205 --RLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG---QGRVLVFNKR-GYPIGQILIPGRDEGH 278 (333)
T ss_dssp --EEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET---TTEEEEECTT-SCEEEEEECTTGGGTC
T ss_pred --eEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcC---CCEEEEECCC-CCEEEEEEcCCCcccc
Confidence 8999998632 110000 01112222 25678999999997777655 7899999985 4444332 111
Q ss_pred --ceeeEEECCCCCEEEEEEc
Q 005140 557 --MATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 557 --~v~~~~~spdg~~l~t~s~ 575 (712)
.+.+++|+|||+.|+.++.
T Consensus 279 ~~~~~~~~~~~dg~~L~v~~~ 299 (333)
T 2dg1_A 279 MLRSTHPQFIPGTNQLIICSN 299 (333)
T ss_dssp SCBCCEEEECTTSCEEEEEEE
T ss_pred ccCcceEEECCCCCEEEEEeC
Confidence 5889999999988876665
No 244
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.50 E-value=7e-14 Score=122.84 Aligned_cols=80 Identities=23% Similarity=0.388 Sum_probs=73.0
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+++|+++|++||.|.. |.|+.|+.+|+++|||||+|.+.++|.+|++.|||..+.++
T Consensus 41 ~~~~l~V~nLp~------~~~~~~l~~~F~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 112 (139)
T 1u6f_A 41 VLRNLMVNYIPT------TVDEVQLRQLFERYGPIES--VKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNK 112 (139)
T ss_dssp TTSEEEEESCST------TCCHHHHHHHHHHHSCEEE--EEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSC
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 467999999997 4458999999999999999 99999999999999999999999999999999999999985
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 113 -~l~v~~a~ 120 (139)
T 1u6f_A 113 -RLKVALAA 120 (139)
T ss_dssp -EEEEEESS
T ss_pred -EEEEEECC
Confidence 78887654
No 245
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.49 E-value=9.5e-12 Score=127.11 Aligned_cols=271 Identities=11% Similarity=0.055 Sum_probs=166.3
Q ss_pred ceEEeecccCcceeeeec-------C-CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCc
Q 005140 235 GAAVWGGANTFNRLMRYA-------H-PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSAD 306 (712)
Q Consensus 235 ~i~iw~~~~~~~~~~~~~-------~-~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~ 306 (712)
+|.++|.. +++....+. . .....+.+. +++..++...+ +.|.+||..+++.+.++.....
T Consensus 18 ~l~~~d~~-t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~----------~~v~viD~~t~~~~~~i~~~~~ 85 (328)
T 3dsm_A 18 TLSYYDPA-TCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNS----------HVIFAIDINTFKEVGRITGFTS 85 (328)
T ss_dssp EEEEEETT-TTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGG----------TEEEEEETTTCCEEEEEECCSS
T ss_pred eEEEEECC-CCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCC----------CEEEEEECcccEEEEEcCCCCC
Confidence 38899998 666554431 1 126778774 34444555555 7899999999999888864433
Q ss_pred ccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccc-----cCeeeEEECCCCCeEEEEee
Q 005140 307 EFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKV-----ENVMDFSWSPTDPIISLFVP 380 (712)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~sp~~~~la~~~~ 380 (712)
.. .+++++ +++.+++.. ++.|.+||..++++........ .....+++ ++..|.+
T Consensus 86 p~--------------~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv--- 145 (328)
T 3dsm_A 86 PR--------------YIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYV--- 145 (328)
T ss_dssp EE--------------EEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEE---
T ss_pred Cc--------------EEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEE---
Confidence 33 588989 887666663 8999999999887664332211 13445555 3333333
Q ss_pred cCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEec
Q 005140 381 ELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELD 460 (712)
Q Consensus 381 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~ 460 (712)
+.......|..++..+.+.+.. +..
T Consensus 146 --~~~~~~~~v~viD~~t~~~~~~----------------------------------------------------i~~- 170 (328)
T 3dsm_A 146 --NCWSYQNRILKIDTETDKVVDE----------------------------------------------------LTI- 170 (328)
T ss_dssp --EECTTCCEEEEEETTTTEEEEE----------------------------------------------------EEC-
T ss_pred --EcCCCCCEEEEEECCCCeEEEE----------------------------------------------------EEc-
Confidence 1111123444454433221110 111
Q ss_pred CCCCceEEEEEeeCCCEEEEEEcCCC-------CCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEec
Q 005140 461 NKNDKIIAFAWEPKGHRFAVIHGDSP-------RPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGL 532 (712)
Q Consensus 461 ~h~~~v~~~~~sp~g~~l~~~~~d~~-------~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~ 532 (712)
......++++|+|++++++..+.. ...|.++|..++.. .....+. +...+.++|+|+|++|+++.
T Consensus 171 --g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v----~~~~~~~~g~~p~~la~~~d~~~lyv~~- 243 (328)
T 3dsm_A 171 --GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTV----EKQFKFKLGDWPSEVQLNGTRDTLYWIN- 243 (328)
T ss_dssp --SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE----EEEEECCTTCCCEEEEECTTSCEEEEES-
T ss_pred --CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeE----EEEEecCCCCCceeEEEecCCCEEEEEc-
Confidence 223356778888886666554300 12789999865431 1112232 33578999999999998874
Q ss_pred cCCCceEEEEECCcceeeee--cc--ccceeeEEECCCCCEEEEEE-----ccceeccccEEEEEecCceeeeecc-cce
Q 005140 533 KGFNGQLEFYNVDELETMAT--AE--HFMATDVEWDPTGRYVATAV-----TSVHEMENGFNIWSFNGKLLYRTLK-DHF 602 (712)
Q Consensus 533 ~~~dg~v~iwd~~~~~~~~~--~~--~~~v~~~~~spdg~~l~t~s-----~~~~~~d~~v~iw~~~g~~~~~~~~-~~i 602 (712)
+.|.+||..+++.... .. ......++++|++..|..+. . ++.|.+|+..|+.+..... ...
T Consensus 244 ----~~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~-----~~~V~v~d~~g~~~~~i~~G~~P 314 (328)
T 3dsm_A 244 ----NDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQ-----QGIVYRYSPQGKLIDEFYVGIIP 314 (328)
T ss_dssp ----SSEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSS-----EEEEEEECTTCCEEEEEEEEESE
T ss_pred ----cEEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEccccccc-----CCEEEEECCCCCEEEEEEeccCc
Confidence 3899999988776432 11 35678999999655555554 4 7899999999887776644 234
Q ss_pred eeeEEe
Q 005140 603 FQFLWR 608 (712)
Q Consensus 603 ~~~~w~ 608 (712)
.+++|-
T Consensus 315 ~~~~~~ 320 (328)
T 3dsm_A 315 GAFCWK 320 (328)
T ss_dssp EEEEEE
T ss_pred ceEEEe
Confidence 555553
No 246
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.49 E-value=2.3e-14 Score=117.65 Aligned_cols=80 Identities=18% Similarity=0.303 Sum_probs=67.0
Q ss_pred ccCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccC-CCCCcccEEEEEeCCHHHHHHHHHHhCCCc
Q 005140 55 ESGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDP-ETQKSLGYCFIEYNTPQEAELAKEKTNGYK 133 (712)
Q Consensus 55 ~~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~-~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~ 133 (712)
.....++|||+|||. +..+++|+++|++|| |.+ +.|+.|+ .+|+++|||||+|.+.++|.+|+ .|||..
T Consensus 15 ~~~~~~~l~V~nLp~------~~t~~~l~~~F~~~G-i~~--v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~ 84 (100)
T 2j76_E 15 PKSPPYTAFLGNLPY------DVTEESIKEFFRGLN-ISA--VRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEES 84 (100)
T ss_dssp -----CEEEESCCSS------CCSSSHHHHHSCSSC-EEE--EECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCC
T ss_pred CCCCCcEEEEeCCCC------CCCHHHHHHHHHhcC-CeE--EEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCE
Confidence 344578999999997 444788999999999 999 9999998 69999999999999999999999 899999
Q ss_pred cCCceEEEEEee
Q 005140 134 LDRAHIFAVNMF 145 (712)
Q Consensus 134 ~~~~~~l~v~~~ 145 (712)
++++ .+.|...
T Consensus 85 ~~g~-~l~V~~a 95 (100)
T 2j76_E 85 LGNR-RIRVDVA 95 (100)
T ss_dssp BTTB-CCCCEEC
T ss_pred ECCe-EEEEEec
Confidence 9886 5655543
No 247
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.49 E-value=4.1e-14 Score=122.57 Aligned_cols=82 Identities=20% Similarity=0.244 Sum_probs=71.0
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCC----c
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGY----K 133 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~----~ 133 (712)
-.++|||+|||. +..+++|+++|++||.|...+|.|++|+.||++||||||+|.+. +|.+|+..|||. .
T Consensus 22 ~~~~lfV~nL~~------~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 22 ANDTIILRNLNP------HSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp CCCEEEECSCCT------TCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 457999999997 44488999999999999444489999999999999999999999 999999999999 9
Q ss_pred cCCceEEEEEeecc
Q 005140 134 LDRAHIFAVNMFDD 147 (712)
Q Consensus 134 ~~~~~~l~v~~~~~ 147 (712)
++++ .+.|.....
T Consensus 95 ~~gr-~l~V~~a~~ 107 (131)
T 2m2b_A 95 IDGK-TINVEFAKG 107 (131)
T ss_dssp GGGC-CCCCEECCC
T ss_pred CCCE-EEEEEECCC
Confidence 9885 777765443
No 248
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=4e-14 Score=119.52 Aligned_cols=80 Identities=16% Similarity=0.251 Sum_probs=72.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+.+|+++|++||.|.. +.|+.|+.+|+++|||||+|.+.++|.+|+ .|||..++++
T Consensus 24 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 94 (114)
T 2cq4_A 24 DARTVFCMQLAA------RIRPRDLEDFFSAVGKVRD--VRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGV 94 (114)
T ss_dssp HHTEEEEESCCT------TCCHHHHHHHHTTTSCEEE--EEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhCCCEeE--EEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCe
Confidence 357999999997 4458899999999999999 999999999999999999999999999999 9999999885
Q ss_pred eEEEEEeecc
Q 005140 138 HIFAVNMFDD 147 (712)
Q Consensus 138 ~~l~v~~~~~ 147 (712)
.+.|.....
T Consensus 95 -~l~V~~a~~ 103 (114)
T 2cq4_A 95 -PIIVQASQA 103 (114)
T ss_dssp -EEEEEEHHH
T ss_pred -EEEEEecCC
Confidence 888876543
No 249
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.8e-13 Score=115.60 Aligned_cols=79 Identities=24% Similarity=0.226 Sum_probs=71.3
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+++|||+|||. ...+++|+++|++||.|.. +.|+.|+ +|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 14 ~~~~l~V~nlp~------~~~~~~l~~~f~~~G~i~~--~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 84 (114)
T 2do0_A 14 LGSTVFVANLDY------KVGWKKLKEVFSMAGVVVR--ADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDR 84 (114)
T ss_dssp CCSCEEEESCCT------TCCHHHHHHHHTTTSCEEE--EEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCC
Confidence 467999999997 4458999999999999999 9999998 799999999999999999999999999999985
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 85 -~l~v~~a~ 92 (114)
T 2do0_A 85 -PMHVKMDE 92 (114)
T ss_dssp -ECEEEECS
T ss_pred -EEEEEEcc
Confidence 78877643
No 250
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=8.1e-14 Score=115.29 Aligned_cols=78 Identities=23% Similarity=0.292 Sum_probs=70.3
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.|+.| +|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 14 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2d9p_A 14 QVVNLYVKNLDD------GIDDERLRKAFSPFGTITS--AKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 83 (103)
T ss_dssp SCCCEEEECCCT------TCCHHHHHHTTTTTSCEEE--EEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCEEE--EEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 457999999997 4458999999999999999 999998 899999999999999999999999999999885
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 84 -~l~V~~a~ 91 (103)
T 2d9p_A 84 -PLYVALAQ 91 (103)
T ss_dssp -BCEEEECS
T ss_pred -EEEEEEec
Confidence 77777644
No 251
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.49 E-value=7.4e-14 Score=115.44 Aligned_cols=78 Identities=23% Similarity=0.437 Sum_probs=70.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+++|+++|++|| |.. |.|+.|+.+|+++|||||+|.+.++|.+|+ .|||..++++
T Consensus 14 ~~~~l~V~nLp~------~~t~~~l~~~F~~~g-i~~--v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 83 (103)
T 2dng_A 14 PPYTAYVGNLPF------NTVQGDIDAIFKDLS-IRS--VRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDR 83 (103)
T ss_dssp SCEEEEEESCCT------TCCHHHHHHHTTTSC-EEE--EEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CCeEEEEeCCCC------CCCHHHHHHHHHhCC-ceE--EEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCe
Confidence 357999999997 445899999999997 999 999999999999999999999999999999 8999999985
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 84 -~l~V~~a~ 91 (103)
T 2dng_A 84 -SLRVDIAE 91 (103)
T ss_dssp -ECEEEECC
T ss_pred -EEEEEEec
Confidence 77777643
No 252
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=5.8e-14 Score=116.32 Aligned_cols=78 Identities=19% Similarity=0.330 Sum_probs=70.0
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCC-CCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPET-QKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~-~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
-.++|||+|||. ...+++|+++|++|| |.. |.|+.|+.+ |+++|||||+|.+.++|.+|+ .|||..+++
T Consensus 14 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G-i~~--v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 83 (104)
T 1wi8_A 14 PPYTAFLGNLPY------DVTEESIKEFFRGLN-ISA--VRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN 83 (104)
T ss_dssp SCEEEEEESCCS------SCCHHHHHHHTTTSC-EEE--EECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT
T ss_pred CCCEEEEeCCCC------cCCHHHHHHHHHHCC-ceE--EEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC
Confidence 457999999997 445899999999999 999 999999988 999999999999999999999 999999988
Q ss_pred ceEEEEEeec
Q 005140 137 AHIFAVNMFD 146 (712)
Q Consensus 137 ~~~l~v~~~~ 146 (712)
+ .+.|....
T Consensus 84 ~-~l~V~~a~ 92 (104)
T 1wi8_A 84 K-RIRVDVAD 92 (104)
T ss_dssp E-ECEEEECC
T ss_pred c-EEEEEEcc
Confidence 5 77777643
No 253
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.49 E-value=7.3e-14 Score=120.37 Aligned_cols=79 Identities=30% Similarity=0.388 Sum_probs=71.9
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+++|||+|||. ...+++|+++|++||.|.. |.|+.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 21 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 92 (126)
T 3ex7_B 21 EGWILFVTGVHE------EATEEDIHDKFAEYGEIKN--IHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 92 (126)
T ss_dssp SSEEEEEESCCT------TCCHHHHHHHHHTTSCEEE--EECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 467999999997 4558999999999999999 99999999999999999999999999999999999999885
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 93 -~l~v~~a 99 (126)
T 3ex7_B 93 -PISVDWC 99 (126)
T ss_dssp -BCEEEES
T ss_pred -EEEEEEe
Confidence 7777653
No 254
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=4.6e-14 Score=114.23 Aligned_cols=73 Identities=21% Similarity=0.240 Sum_probs=62.9
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCC--CccC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNG--YKLD 135 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~--~~~~ 135 (712)
-+++|||+|||. +..+.+|+++|++||.|.+ +.|+.| ||||||+|++.++|.+|++.+++ ..++
T Consensus 15 ~~~~LfV~nLp~------~vte~dL~~lF~~fG~V~~--v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~ 80 (105)
T 1sjq_A 15 PSRVIHIRKLPI------DVTEGEVISLGLPFGKVTN--LLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLR 80 (105)
T ss_dssp CCCEEEECSCCT------TSCHHHHHHHHHHHCCEEE--EEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEET
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCEEE--EEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 357999999997 5559999999999999999 999975 69999999999999999998864 6788
Q ss_pred CceEEEEEee
Q 005140 136 RAHIFAVNMF 145 (712)
Q Consensus 136 ~~~~l~v~~~ 145 (712)
++ .+.|...
T Consensus 81 Gr-~l~V~~A 89 (105)
T 1sjq_A 81 GQ-PIYIQFS 89 (105)
T ss_dssp TE-ECCBCCC
T ss_pred CE-EEEEEEc
Confidence 75 6666653
No 255
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.49 E-value=1.1e-13 Score=124.26 Aligned_cols=81 Identities=30% Similarity=0.440 Sum_probs=73.7
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
.-.++|||+|||. ...+++|+++|++||.|.. |.|+.|+.+++++|||||+|.+.++|.+|++.|||..+++
T Consensus 37 ~~~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 108 (156)
T 1h2v_Z 37 KKSCTLYVGNLSF------YTTEEQIYELFSKSGDIKK--IIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDD 108 (156)
T ss_dssp TTCCEEEEESCCT------TCCHHHHHHHHGGGSCEEE--EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETT
T ss_pred CCCCEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3568999999997 4458999999999999999 9999999999999999999999999999999999999988
Q ss_pred ceEEEEEeec
Q 005140 137 AHIFAVNMFD 146 (712)
Q Consensus 137 ~~~l~v~~~~ 146 (712)
+ .+.|....
T Consensus 109 ~-~l~V~~a~ 117 (156)
T 1h2v_Z 109 R-IIRTDWDA 117 (156)
T ss_dssp E-ECEEEEES
T ss_pred e-EEEEEECC
Confidence 5 88887754
No 256
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.49 E-value=1e-14 Score=117.39 Aligned_cols=76 Identities=22% Similarity=0.278 Sum_probs=69.0
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceE
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~ 139 (712)
++|||+|||. +..+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.+ |.+|+..|||..++++ .
T Consensus 2 ~~l~V~nLp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~-~ 71 (90)
T 2ki2_A 2 RNIYVGNLVY------SATSEQVKELFSQFGKVFN--VKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGR-T 71 (90)
T ss_dssp EEEEEEEECT------TSSHHHHTTTHHHHTCCSE--EEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSS-S
T ss_pred cEEEECCCCC------CCCHHHHHHHHHhcCCEEE--EEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCe-E
Confidence 4799999997 4558999999999999999 999999999999999999999999 9999999999999985 6
Q ss_pred EEEEee
Q 005140 140 FAVNMF 145 (712)
Q Consensus 140 l~v~~~ 145 (712)
+.|...
T Consensus 72 l~V~~a 77 (90)
T 2ki2_A 72 IRVTEA 77 (90)
T ss_dssp CSEEEC
T ss_pred EEEEEc
Confidence 766653
No 257
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.49 E-value=2.9e-11 Score=120.97 Aligned_cols=236 Identities=13% Similarity=0.137 Sum_probs=152.0
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEe-cCCCCCE
Q 005140 255 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRW-GGGKDKY 333 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~dg~~ 333 (712)
.+.+++++|+|+++++...+ +.|.+||.. ++.+..+....... +....+. .+++ .+ ++.+
T Consensus 31 ~p~~v~~~~~g~l~v~~~~~----------~~i~~~d~~-g~~~~~~~~~~~~~--~~~~~p~-----~i~~~~~-~g~l 91 (286)
T 1q7f_A 31 EPSGVAVNAQNDIIVADTNN----------HRIQIFDKE-GRFKFQFGECGKRD--SQLLYPN-----RVAVVRN-SGDI 91 (286)
T ss_dssp CEEEEEECTTCCEEEEEGGG----------TEEEEECTT-SCEEEEECCBSSST--TCBSSEE-----EEEEETT-TTEE
T ss_pred CCceEEECCCCCEEEEECCC----------CEEEEECCC-CcEEEEecccCCCc--ccccCce-----EEEEEcC-CCeE
Confidence 48899999999988887777 889999975 77776664321000 0000011 5788 57 7877
Q ss_pred EEEec--CCeEEEEEcCCceeccccc-ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeee
Q 005140 334 FAKLG--KNMISVYETESFTLIDKKS-LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV 410 (712)
Q Consensus 334 la~~~--d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 410 (712)
+++.. ++.|.+|+ .+++.+.... .....+.+++++|+|+++++ ...+ ..|..|
T Consensus 92 ~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~-----~~~~--~~i~~~---------------- 147 (286)
T 1q7f_A 92 IVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVV-----ECKV--MRVIIF---------------- 147 (286)
T ss_dssp EEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEE-----ETTT--TEEEEE----------------
T ss_pred EEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEE-----ECCC--CEEEEE----------------
Confidence 77764 88999999 4455443321 12345788999999886654 2222 233333
Q ss_pred cceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeE
Q 005140 411 SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDI 490 (712)
Q Consensus 411 ~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v 490 (712)
.++|..+... ....+...+.+++++|+|+.+++...++ .|
T Consensus 148 -------~~~g~~~~~~------------------------------~~~~~~~~p~~i~~~~~g~l~v~~~~~~---~i 187 (286)
T 1q7f_A 148 -------DQNGNVLHKF------------------------------GCSKHLEFPNGVVVNDKQEIFISDNRAH---CV 187 (286)
T ss_dssp -------CTTSCEEEEE------------------------------ECTTTCSSEEEEEECSSSEEEEEEGGGT---EE
T ss_pred -------cCCCCEEEEe------------------------------CCCCccCCcEEEEECCCCCEEEEECCCC---EE
Confidence 3333322111 0112234578899999998666655566 89
Q ss_pred EEEEeecccccCceeEEEEeCC----CceeEEEEccCCCeEEEEeccCCCc-eEEEEECCcceeeeec----cccceeeE
Q 005140 491 SFYSMRTAQHAGRVSKLTTLKG----KQANALFWSPSGRFIVLAGLKGFNG-QLEFYNVDELETMATA----EHFMATDV 561 (712)
Q Consensus 491 ~i~d~~~~~~~~~~~~~~~~~~----~~v~~l~~spdg~~l~~~~~~~~dg-~v~iwd~~~~~~~~~~----~~~~v~~~ 561 (712)
.+|+... . .+..+.. .....++++|+|+++++... ++ .|.+|+.. ++.+... ....+.++
T Consensus 188 ~~~~~~g-~------~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~---~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i 256 (286)
T 1q7f_A 188 KVFNYEG-Q------YLRQIGGEGITNYPIGVGINSNGEILIADNH---NNFNLTIFTQD-GQLISALESKVKHAQCFDV 256 (286)
T ss_dssp EEEETTC-C------EEEEESCTTTSCSEEEEEECTTCCEEEEECS---SSCEEEEECTT-SCEEEEEEESSCCSCEEEE
T ss_pred EEEcCCC-C------EEEEEccCCccCCCcEEEECCCCCEEEEeCC---CCEEEEEECCC-CCEEEEEcccCCCCcceeE
Confidence 9999732 1 3444432 35688999999988777765 55 99999976 4443331 12347789
Q ss_pred EECCCCCEEEEEEccceeccccEEEEEec
Q 005140 562 EWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 562 ~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
+++|+|+.+++ +. ++.|++|++.
T Consensus 257 ~~~~~g~l~vs-~~-----~~~v~v~~~~ 279 (286)
T 1q7f_A 257 ALMDDGSVVLA-SK-----DYRLYIYRYV 279 (286)
T ss_dssp EEETTTEEEEE-ET-----TTEEEEEECS
T ss_pred EECCCCcEEEE-CC-----CCeEEEEEcc
Confidence 99999986666 56 8999999875
No 258
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.49 E-value=2.7e-13 Score=116.31 Aligned_cols=80 Identities=20% Similarity=0.342 Sum_probs=72.2
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
.-+++|||+|||. ...+++|+++|++||.|.. +.++.|+ +|+++|||||+|.+.++|.+|++.|||..+++
T Consensus 33 ~~~~~l~V~nlp~------~~t~~~l~~~F~~~G~v~~--v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 103 (124)
T 2kt5_A 33 ETGAKLLVSNLDF------GVSDADIQELFAEFGTLKK--AAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDG 103 (124)
T ss_dssp SSCEEEEEESCCS------SCCHHHHHHHHHTTSCCSE--EEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSS
T ss_pred CCCCEEEEeCCCC------CCCHHHHHHHHHhcCCeeE--EEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 4568999999997 4448899999999999999 9999999 99999999999999999999999999999988
Q ss_pred ceEEEEEeec
Q 005140 137 AHIFAVNMFD 146 (712)
Q Consensus 137 ~~~l~v~~~~ 146 (712)
+ .+.|....
T Consensus 104 ~-~l~V~~a~ 112 (124)
T 2kt5_A 104 R-PMDIQLVA 112 (124)
T ss_dssp C-EEEEEEEC
T ss_pred c-EEEEEEeC
Confidence 5 78887643
No 259
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=5.2e-14 Score=116.71 Aligned_cols=78 Identities=17% Similarity=0.223 Sum_probs=69.7
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhc-cCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCc-cC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQ-IGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYK-LD 135 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~-~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~-~~ 135 (712)
-+++|||+|||. +..+++|+++|++ ||.|.. +.|+.|+ +|+++|||||+|.+.++|.+|++.|||.. ++
T Consensus 8 ~~~~l~V~nLp~------~~t~~~l~~~F~~~~G~v~~--v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~ 78 (104)
T 2dhg_A 8 PEYSLFVGDLTP------DVDDGMLYEFFVKVYPSCRG--GKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLG 78 (104)
T ss_dssp CCCCEEEECCCT------TCCHHHHHHHHHHHCTTEEE--EEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSS
T ss_pred CCcEEEEeCCCC------CCCHHHHHHHHHHhCCCeEE--EEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccC
Confidence 467999999997 4458899999999 999999 9999999 99999999999999999999999999999 88
Q ss_pred CceEEEEEee
Q 005140 136 RAHIFAVNMF 145 (712)
Q Consensus 136 ~~~~l~v~~~ 145 (712)
++ .+.|...
T Consensus 79 g~-~l~v~~a 87 (104)
T 2dhg_A 79 SK-PVRLSVA 87 (104)
T ss_dssp SS-CCCCCBC
T ss_pred CE-eEEEEEc
Confidence 85 5655543
No 260
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.48 E-value=6.2e-14 Score=116.85 Aligned_cols=79 Identities=19% Similarity=0.306 Sum_probs=68.7
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.+ |..++++
T Consensus 24 ~~~~lfV~nLp~------~~te~~L~~~F~~~G~i~~--v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~ 94 (109)
T 2rs2_A 24 SGCKMFIGGLSW------QTTQEGLREYFGQFGEVKE--CLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSK 94 (109)
T ss_dssp --CCEEEESCCT------TCCHHHHHHHHTTTSCEEE--EEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHccCCeEE--EEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCE
Confidence 357999999997 4458999999999999999 999999999999999999999999999999976 4888885
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 95 -~l~V~~a~ 102 (109)
T 2rs2_A 95 -TIDPKVAF 102 (109)
T ss_dssp -EEEEEECC
T ss_pred -EEEEEEcc
Confidence 77777643
No 261
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=3.9e-14 Score=116.17 Aligned_cols=77 Identities=16% Similarity=0.268 Sum_probs=67.2
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+++|+++|++||. ++ +.|++|+ +|++||||||+|.+.++|++|++ +|+..++++
T Consensus 14 ~~~~l~V~nLp~------~~te~~l~~~F~~~G~-~~--v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr 82 (102)
T 1wez_A 14 TGHCVHMRGLPY------RATENDIYNFFSPLNP-MR--VHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHR 82 (102)
T ss_dssp SSCEEEEESCCT------TCCHHHHHHSSCSCCC-SE--EEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSS
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHHcCc-eE--EEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCc
Confidence 357999999998 5559999999999995 47 9999999 99999999999999999999995 799999886
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 83 -~i~V~~~~ 90 (102)
T 1wez_A 83 -YVELFLNS 90 (102)
T ss_dssp -CCEEEEEC
T ss_pred -EEEEEECC
Confidence 66666543
No 262
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.48 E-value=2.2e-11 Score=139.19 Aligned_cols=289 Identities=11% Similarity=0.038 Sum_probs=168.4
Q ss_pred EcCCCcEEEEEecCc----eEEeeccc-----Cc-ceeee---e--cCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCc
Q 005140 221 WSPLGTYLATVHRQG----AAVWGGAN-----TF-NRLMR---Y--AHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANR 284 (712)
Q Consensus 221 ~Spdg~~lat~~~~~----i~iw~~~~-----~~-~~~~~---~--~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~ 284 (712)
.+|+|+++++...++ ..||-... .. +.+.. + .+. .+..++|||||++||+++.+. +...
T Consensus 114 p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~-----G~e~ 188 (741)
T 1yr2_A 114 PQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDG-----GSDW 188 (741)
T ss_dssp CEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEET-----TCSE
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCC-----CCce
Confidence 359999999887543 34675431 11 22211 1 121 378999999999999887541 1111
Q ss_pred cEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CC--------------eEEEEEcCC
Q 005140 285 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KN--------------MISVYETES 349 (712)
Q Consensus 285 ~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~--------------~i~iwd~~~ 349 (712)
..|++||+.+|+.+.... +.... ..++||| | +.|+.+. ++ .|.+|++.+
T Consensus 189 ~~i~v~dl~tg~~~~~~~-~~~~~-------------~~~~wsp-D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt 252 (741)
T 1yr2_A 189 RTVKFVGVADGKPLADEL-KWVKF-------------SGLAWLG-N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGT 252 (741)
T ss_dssp EEEEEEETTTCCEEEEEE-EEEES-------------CCCEEST-T-SEEEEEECCCC--------CCCCCEEEEEETTS
T ss_pred EEEEEEECCCCCCCCccC-CCcee-------------ccEEEEC-C-CEEEEEEecCcccccccccCCCCCEEEEEECCC
Confidence 479999999998765321 11111 1479999 9 8888776 43 388898876
Q ss_pred ceeccccccc----ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc--cceeeeeeeeecceeEEECcCCCE
Q 005140 350 FTLIDKKSLK----VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK--EELRQKNLFSVSDCKMYWQSSGDY 423 (712)
Q Consensus 350 ~~~~~~~~~~----~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~g~~ 423 (712)
+......... ...+..+.|||||++|++..... .+....||+++.... ............... .++|+|+.
T Consensus 253 ~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~--~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~-~~~~dg~~ 329 (741)
T 1yr2_A 253 PQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEG--TDPVNTVHVARVTNGKIGPVTALIPDLKAQWD-FVDGVGDQ 329 (741)
T ss_dssp CGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECT--TCSCCEEEEEEEETTEECCCEEEECSSSSCEE-EEEEETTE
T ss_pred CchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEcc--CCCcceEEEEECCCCCCcccEEecCCCCceEE-EEeccCCE
Confidence 5422111111 12378899999999998854322 224567888887654 202221111112222 24589999
Q ss_pred EEEEEcccccccccccccEEEEEEecCCc-ceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccC
Q 005140 424 LAVKVDRYTKTKKSTYTGFELFRIKERDI-PIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAG 502 (712)
Q Consensus 424 l~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~ 502 (712)
|++.+.... ....||.++..+. ......++.+...+.+++|+ ++..+++...++ ..+||.++....
T Consensus 330 l~~~s~~~~-------~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg---~~~l~~~~~~g~-- 396 (741)
T 1yr2_A 330 LWFVSGDGA-------PLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDA---KSQVLAFDLDGK-- 396 (741)
T ss_dssp EEEEECTTC-------TTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETT---EEEEEEEETTSC--
T ss_pred EEEEECCCC-------CCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECC---EEEEEEEeCCCC--
Confidence 998877532 1134555443321 11112233445566677887 555556666666 566665542111
Q ss_pred ceeEEEEeC---CCceeEEEEccCCCeEEEEec-cCCCceEEEEECCccee
Q 005140 503 RVSKLTTLK---GKQANALFWSPSGRFIVLAGL-KGFNGQLEFYNVDELET 549 (712)
Q Consensus 503 ~~~~~~~~~---~~~v~~l~~spdg~~l~~~~~-~~~dg~v~iwd~~~~~~ 549 (712)
....+. ...+..+.++|+|+.|++... ....++|++||+.+++.
T Consensus 397 ---~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 397 ---PAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp ---EEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred ---ceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 333333 335788999999987664432 22368999999987663
No 263
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.48 E-value=1.2e-13 Score=110.64 Aligned_cols=74 Identities=12% Similarity=0.051 Sum_probs=63.7
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCc--cC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYK--LD 135 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~--~~ 135 (712)
-+++|||+|||. +..+++|+++|++||.|.+ +.|+. .||||||+|++.++|.+|++.|||.. +.
T Consensus 20 ps~~l~V~NLp~------~~te~~L~~lF~~fG~V~~--v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~ 85 (100)
T 3r27_A 20 ASPVVHIRGLID------GVVEADLVEALQEFGPISY--VVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIA 85 (100)
T ss_dssp CCSEEEEESCCT------TCCHHHHHHHHGGGSCEEE--EEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEET
T ss_pred CCcEEEEeCCCC------CCCHHHHHHHHhccCCEEE--EEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeC
Confidence 467999999997 5558999999999999999 98874 47999999999999999999999986 56
Q ss_pred CceEEEEEeec
Q 005140 136 RAHIFAVNMFD 146 (712)
Q Consensus 136 ~~~~l~v~~~~ 146 (712)
++ .+.|...+
T Consensus 86 Gr-~i~V~~S~ 95 (100)
T 3r27_A 86 GH-PAFVNYST 95 (100)
T ss_dssp TE-EEEEEECS
T ss_pred Cc-EEEEEecc
Confidence 75 77777643
No 264
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.48 E-value=1.8e-11 Score=124.99 Aligned_cols=296 Identities=11% Similarity=0.042 Sum_probs=185.7
Q ss_pred EEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec
Q 005140 259 IDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG 338 (712)
Q Consensus 259 i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~ 338 (712)
....|+++.++...... ....+.|.++|..+++.+..+...... .+.+|| ||++++.+.
T Consensus 38 ~~~~pd~~~vyV~~~~~-----~~~~~~V~ViD~~t~~v~~~I~vG~~P---------------~va~sp-DG~~lyVan 96 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAH-----FAAVTQQFVIDGEAGRVIGMIDGGFLP---------------NPVVAD-DGSFIAHAS 96 (386)
T ss_dssp CCCCCCTTEEEEEECGG-----GCSSEEEEEEETTTTEEEEEEEECSSC---------------EEEECT-TSSCEEEEE
T ss_pred eccCCCCCEEEEEcCcc-----cCCCCEEEEEECCCCeEEEEEECCCCC---------------cEEECC-CCCEEEEEc
Confidence 55679999888776520 000168999999999999888654332 489999 999776553
Q ss_pred -----------CCeEEEEEcCCceecccccccc-------cCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc
Q 005140 339 -----------KNMISVYETESFTLIDKKSLKV-------ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE 400 (712)
Q Consensus 339 -----------d~~i~iwd~~~~~~~~~~~~~~-------~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~ 400 (712)
++.|.+||..+++.+....... .....+.++|||+++.+ +.......|.+++..+.+
T Consensus 97 ~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyV-----an~~~~~~VsVID~~t~~ 171 (386)
T 3sjl_D 97 TVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLF-----YQFSPAPAVGVVDLEGKA 171 (386)
T ss_dssp EEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEE-----EECSSSCEEEEEETTTTE
T ss_pred ccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEE-----EEcCCCCeEEEEECCCCc
Confidence 5789999999988776543321 23567999999999887 222334678899999888
Q ss_pred ceeeeeeeee------cc-eeEEECcCCCEEEEEEcc-cccccccccccEEEEEEecCCcceeEEEecCCCCceE-EEEE
Q 005140 401 ELRQKNLFSV------SD-CKMYWQSSGDYLAVKVDR-YTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKII-AFAW 471 (712)
Q Consensus 401 ~~~~~~~~~~------~~-~~~~~s~~g~~l~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~-~~~~ 471 (712)
.+........ .. .-+..+++|+.+.+.... +. + + ...... +.....++. ..+|
T Consensus 172 vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~---------v-~-~~~~~~-------~~~~~~~~~~~~~~ 233 (386)
T 3sjl_D 172 FKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGT---------P-E-ITHTEV-------FHPEDEFLINHPAY 233 (386)
T ss_dssp EEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSC---------C-E-EEECCC-------CSCTTSCBCSCCEE
T ss_pred EEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCe---------E-E-Eeecce-------ecccccccccccee
Confidence 7665543211 10 112345566655554433 11 1 0 000000 000012222 2466
Q ss_pred e-eCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC------------CCceeEEEEccCCCeEEEEecc-----
Q 005140 472 E-PKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK------------GKQANALFWSPSGRFIVLAGLK----- 533 (712)
Q Consensus 472 s-p~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~------------~~~v~~l~~spdg~~l~~~~~~----- 533 (712)
. ++|++ ++.+.++ .|+++|+.+.... .+..+. ......++++|+++.++++...
T Consensus 234 ~~~dG~~-~~vs~~g---~V~v~d~~~~~~~----v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~ 305 (386)
T 3sjl_D 234 SQKAGRL-VWPTYTG---KIHQIDLSSGDAK----FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWR 305 (386)
T ss_dssp ETTTTEE-EEEBTTS---EEEEEECTTSSCE----ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTC
T ss_pred EcCCCcE-EEEeCCC---EEEEEECCCCcce----eecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccc
Confidence 5 56654 4455566 8999998654311 111111 1123457889999998887531
Q ss_pred --CCCceEEEEECCcceeeeeccc-cceeeEEECCCCC-EEEEEEccceeccccEEEEEec-Cceeeeec-ccceeeeEE
Q 005140 534 --GFNGQLEFYNVDELETMATAEH-FMATDVEWDPTGR-YVATAVTSVHEMENGFNIWSFN-GKLLYRTL-KDHFFQFLW 607 (712)
Q Consensus 534 --~~dg~v~iwd~~~~~~~~~~~~-~~v~~~~~spdg~-~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~~-~~~i~~~~w 607 (712)
...+.|.++|+.+++.+..... ..+.+++++|||+ .|+++... ++.+.++|.. ++.+.... .+...++.+
T Consensus 306 hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~----~~~VsViD~~t~k~~~~i~~~~~p~~l~~ 381 (386)
T 3sjl_D 306 HKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTG----DKTLYIHDAESGEELRSVNQLGHGPQVIT 381 (386)
T ss_dssp TTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETT----TTEEEEEETTTCCEEEEECCCCSSCCEEE
T ss_pred cCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCC----CCeEEEEECCCCcEEEEecCCCCCceeEE
Confidence 0136899999999999887544 4677999999998 55554432 7899999986 56655553 367778888
Q ss_pred ecC
Q 005140 608 RPR 610 (712)
Q Consensus 608 ~p~ 610 (712)
++|
T Consensus 382 s~d 384 (386)
T 3sjl_D 382 TAD 384 (386)
T ss_dssp ECC
T ss_pred CCc
Confidence 877
No 265
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.48 E-value=9.9e-14 Score=112.14 Aligned_cols=76 Identities=24% Similarity=0.310 Sum_probs=67.7
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+++|||+|||. +..+++|+++|++||.|.. +.++.+ +|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 7 ~~~~l~V~nlp~------~~t~~~l~~~f~~~G~v~~--~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~ 76 (92)
T 2dgv_A 7 GACQIFVRNLPF------DFTWKMLKDKFNECGHVLY--ADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGR 76 (92)
T ss_dssp SCCEEEECSCCT------TCCHHHHHHHHHTTSCEEE--EEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTB
T ss_pred CCcEEEEeCCCC------CCCHHHHHHHHHhcCCEEE--EEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 357999999997 5558999999999999999 999985 799999999999999999999999999999985
Q ss_pred eEEEEEe
Q 005140 138 HIFAVNM 144 (712)
Q Consensus 138 ~~l~v~~ 144 (712)
.+.|..
T Consensus 77 -~l~v~~ 82 (92)
T 2dgv_A 77 -EIDVRI 82 (92)
T ss_dssp -CCCCEE
T ss_pred -EEEEEE
Confidence 666654
No 266
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.47 E-value=1.2e-11 Score=128.84 Aligned_cols=306 Identities=10% Similarity=0.027 Sum_probs=176.7
Q ss_pred CCCcEEEEEec------CceEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc
Q 005140 223 PLGTYLATVHR------QGAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK 296 (712)
Q Consensus 223 pdg~~lat~~~------~~i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~ 296 (712)
|++++++.... +.|.+.|.. +.+.+.++....-..+.+||||++|+++.........+...+.|.++|..+++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~-t~~vv~~I~vG~~Pgia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~ 160 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGS-TGRILGMTDGGFLPHPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL 160 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETT-TTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECC-CCEEEEEEECCCCCceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence 56776666554 247899999 88888888654422899999999988876310000000001689999999999
Q ss_pred eeeeccCC-CcccccCCCCCcCCCCcCeEEecCCCCCEEEEec---CCeEEEEEcCCceecccccccc-------cCeee
Q 005140 297 VMRDFKGS-ADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG---KNMISVYETESFTLIDKKSLKV-------ENVMD 365 (712)
Q Consensus 297 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~---d~~i~iwd~~~~~~~~~~~~~~-------~~v~~ 365 (712)
.++.+... ...... ...+. .+.++| ||++++.+. ++.|.++|+.+++.+....... +.-..
T Consensus 161 vv~~I~v~g~~r~~~--g~~P~-----~~~~sp-DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~ 232 (426)
T 3c75_H 161 PIADIELPDAPRFLV--GTYQW-----MNALTP-DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVF 232 (426)
T ss_dssp EEEEEEETTCCCCCB--SCCGG-----GSEECT-TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEE
T ss_pred EEEEEECCCcccccc--CCCcc-----eEEEcC-CCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEE
Confidence 98887532 100000 00011 479999 999888765 5789999999988775443211 01112
Q ss_pred EEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEE
Q 005140 366 FSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELF 445 (712)
Q Consensus 366 ~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~ 445 (712)
++++++|+.+++ ....+.... ... ..+.... ......+.+.++|..+++....+. +.+.
T Consensus 233 v~~~~dG~~~~V-----~~~~~~v~~-~~~----~~~~v~~--~p~~~~~~~~~dg~~~~~~s~~g~---------V~Vi 291 (426)
T 3c75_H 233 YMNCRDGSLARV-----DFADGETKV-TNT----EVFHTED--ELLINHPAFSLRSGRLVWPTYTGK---------IFQA 291 (426)
T ss_dssp EEEETTSSEEEE-----ECCTTCCEE-EEC----CCCSCTT--SCBCSCCEECTTTCEEEEEBTTSE---------EEEE
T ss_pred EEEcCCCCEEEE-----ECCCCcEEE-Eee----eeeccCC--CceeeEeeecCCCCEEEEEeCCCc---------EEEE
Confidence 455566665554 111111111 000 0000000 000112356888888777654432 4444
Q ss_pred EEecCCcce-eEEEecC--------CCCceEEEEEeeCCCEEEEEEcCC-------CCCeEEEEEeecccccCceeEEEE
Q 005140 446 RIKERDIPI-EVLELDN--------KNDKIIAFAWEPKGHRFAVIHGDS-------PRPDISFYSMRTAQHAGRVSKLTT 509 (712)
Q Consensus 446 ~l~~~~~~~-~~~~l~~--------h~~~v~~~~~sp~g~~l~~~~~d~-------~~~~v~i~d~~~~~~~~~~~~~~~ 509 (712)
++......+ ....+.. .......++++|+++++++...++ +.+.|.++|+.+.+ .+.+
T Consensus 292 D~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k------vv~~ 365 (426)
T 3c75_H 292 DLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE------RINK 365 (426)
T ss_dssp EECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC------EEEE
T ss_pred eccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe------EEEE
Confidence 443221110 0111100 011222368999999888775321 12379999987655 5555
Q ss_pred eC-CCceeEEEEccCCC-eEEEEeccCCCceEEEEECCcceeeeec-cccceeeEEECCC
Q 005140 510 LK-GKQANALFWSPSGR-FIVLAGLKGFNGQLEFYNVDELETMATA-EHFMATDVEWDPT 566 (712)
Q Consensus 510 ~~-~~~v~~l~~spdg~-~l~~~~~~~~dg~v~iwd~~~~~~~~~~-~~~~v~~~~~spd 566 (712)
+. +.....+.|+|||+ +++++... ++.|.++|..+++.+.+. ..+.-..+..+||
T Consensus 366 I~vg~~P~gia~spDg~~~lyv~n~~--s~~VsVID~~t~kvv~tI~~vG~~P~~i~~~~ 423 (426)
T 3c75_H 366 IELGHEIDSINVSQDAEPLLYALSAG--TQTLHIYDAATGEELRSVDQLGRGPQIITTHD 423 (426)
T ss_dssp EEEEEEECEEEECCSSSCEEEEEETT--TTEEEEEETTTCCEEEEECCCSSSCCEEECCC
T ss_pred EECCCCcCeEEEccCCCEEEEEEcCC--CCeEEEEECCCCCEEEEecCCCCCCcEEEcCC
Confidence 55 33578999999999 77777631 799999999999998774 4444444666664
No 267
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.47 E-value=5.5e-14 Score=121.04 Aligned_cols=78 Identities=13% Similarity=0.180 Sum_probs=70.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCe---eeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGV---IKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~---v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~ 134 (712)
-.++|||+|||. +..+++|+++|++||. |.. |.|++|+. |+++|||||+|.+.++|++|++ +||..+
T Consensus 43 ~~~~lfVgnLp~------~~te~dL~~~F~~~G~v~~v~~--v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l 112 (136)
T 2hgl_A 43 EGFVVKLRGLPW------SCSVEDVQNFLSDCTIHDGAAG--VHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESM 112 (136)
T ss_dssp TTCEEEEESCCT------TCCHHHHHHHTTTCCCSSSSTT--EEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEES
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHHhCCcCceeE--EEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEE
Confidence 457999999998 5559999999999999 788 99999995 9999999999999999999999 999999
Q ss_pred CCceEEEEEeec
Q 005140 135 DRAHIFAVNMFD 146 (712)
Q Consensus 135 ~~~~~l~v~~~~ 146 (712)
+++ .+.|....
T Consensus 113 ~gr-~i~V~~a~ 123 (136)
T 2hgl_A 113 GHR-YIEVFKSH 123 (136)
T ss_dssp SSS-EEEEEECC
T ss_pred CCE-EEEEEECC
Confidence 986 78877643
No 268
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=5.3e-14 Score=117.86 Aligned_cols=80 Identities=13% Similarity=0.169 Sum_probs=69.3
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHH---HHhhccCeeeeceEEEeccCCCC---CcccEEEEEeCCHHHHHHHHHHhCC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIR---KIYSQIGVIKEDGLWMPVDPETQ---KSLGYCFIEYNTPQEAELAKEKTNG 131 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~---~~f~~~g~v~~~~~~~~~d~~~~---~~~g~~fv~~~~~~~a~~a~~~~~~ 131 (712)
-.++|||+|||. +..+++|+ ++|++||.|.+ +.|+.|+.++ +++|||||+|.+.++|.+|++.|||
T Consensus 14 ~~~~l~V~nLp~------~~~~~~l~~~~~~F~~~G~i~~--v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng 85 (111)
T 2cpi_A 14 QKNLVFVVGLSQ------RLADPEVLKRPEYFGKFGKIHK--VVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNN 85 (111)
T ss_dssp CSSCEEEEEECT------TTCCHHHHHSTTTTTTTSCEEE--EEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCC------CCCHHHHHHHHHHhhccCCEEE--EEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCC
Confidence 357999999997 44477788 99999999999 9999998755 5569999999999999999999999
Q ss_pred CccCCceEEEEEeec
Q 005140 132 YKLDRAHIFAVNMFD 146 (712)
Q Consensus 132 ~~~~~~~~l~v~~~~ 146 (712)
..++++ .+.|....
T Consensus 86 ~~~~gr-~l~V~~a~ 99 (111)
T 2cpi_A 86 VVVDGR-TLKASLGT 99 (111)
T ss_dssp EEETTE-EEEEESCC
T ss_pred CEECCE-EEEEEecc
Confidence 999985 88887643
No 269
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.47 E-value=2.2e-14 Score=110.94 Aligned_cols=73 Identities=23% Similarity=0.435 Sum_probs=64.8
Q ss_pred EEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEE
Q 005140 61 IIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIF 140 (712)
Q Consensus 61 ~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l 140 (712)
+|||+|||. +..+++|+++|++||.|.. +.++.|+.+|+++|||||+|.++++|.+|++. ++..++++ .+
T Consensus 1 ~l~v~nLp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~-~l 70 (75)
T 1iqt_A 1 KIFVGGLSP------DTPEEKIREYFGGFGEVES--IELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLS-KC 70 (75)
T ss_dssp CEEESCCCS------SCCHHHHHHHHHHHSCCSE--ECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTB-CC
T ss_pred CEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCE-EE
Confidence 489999997 4458999999999999999 99999999999999999999999999999995 88888885 55
Q ss_pred EEE
Q 005140 141 AVN 143 (712)
Q Consensus 141 ~v~ 143 (712)
.|.
T Consensus 71 ~v~ 73 (75)
T 1iqt_A 71 EIK 73 (75)
T ss_dssp CEE
T ss_pred EEE
Confidence 443
No 270
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.2e-13 Score=117.06 Aligned_cols=79 Identities=29% Similarity=0.323 Sum_probs=70.8
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.|+.|+.+++++|||||+|.+.++|.+|++.+|+ .++++
T Consensus 16 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~ 86 (116)
T 2cqd_A 16 TFTKIFVGGLPY------HTTDASLRKYFEGFGDIEE--AVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGR 86 (116)
T ss_dssp SSSEEEEECCCS------SCCHHHHHHHHHTTSCEEE--EEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhCCCeeE--EEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCE
Confidence 357999999997 4458999999999999999 99999999999999999999999999999999998 78874
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 87 -~l~V~~a~ 94 (116)
T 2cqd_A 87 -KANVNLAY 94 (116)
T ss_dssp -ECEEEEST
T ss_pred -EEEEEEcc
Confidence 77777643
No 271
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.47 E-value=1.1e-13 Score=121.93 Aligned_cols=78 Identities=26% Similarity=0.427 Sum_probs=70.9
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 62 ~~~~l~v~nlp~------~~~~~~l~~~f~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 133 (140)
T 2ku7_A 62 TKRVLYVGGLAE------EVDDKVLHAAFIPFGDITD--IQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR 133 (140)
T ss_dssp SCCEEEEECCCT------TCCHHHHHHHHGGGSCEEE--EECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTE
T ss_pred CCcEEEEEeCCC------CCCHHHHHHHHHhcCCEEE--EEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 467999999997 4448899999999999999 99999998999999999999999999999999999999985
Q ss_pred eEEEEEe
Q 005140 138 HIFAVNM 144 (712)
Q Consensus 138 ~~l~v~~ 144 (712)
.+.|..
T Consensus 134 -~l~v~~ 139 (140)
T 2ku7_A 134 -TIRVNL 139 (140)
T ss_dssp -EEEEEC
T ss_pred -EEEEEe
Confidence 777653
No 272
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.46 E-value=2.3e-11 Score=121.59 Aligned_cols=237 Identities=11% Similarity=0.116 Sum_probs=150.4
Q ss_pred cCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecC--------CCeeEEEe-cCCCCEEEEEcC-CCCCC
Q 005140 210 KRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAH--------PQVKLIDF-SPGEKYLVTYSS-HEPSN 278 (712)
Q Consensus 210 ~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~--------~~v~~i~~-Spdg~~l~t~s~-d~~~~ 278 (712)
.++.....+++++|+|+++++...++ |.+|+.. +..+..+.. ..+..+++ .++|+.+++... +
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~--g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~---- 99 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE--GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPT---- 99 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT--SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGG----
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC--CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCC----
Confidence 34556678899999999888877666 8899987 333333321 24889999 577877766643 5
Q ss_pred CcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccccc
Q 005140 279 PRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKS 357 (712)
Q Consensus 279 ~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~ 357 (712)
+.|.+|| .+++.+..+....... + ..+++++ +|+++++.. ++.|.+|+.. ++.+....
T Consensus 100 ------~~i~~~d-~~g~~~~~~~~~~~~~-------~-----~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~ 158 (286)
T 1q7f_A 100 ------HQIQIYN-QYGQFVRKFGATILQH-------P-----RGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFG 158 (286)
T ss_dssp ------CEEEEEC-TTSCEEEEECTTTCSC-------E-----EEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEE
T ss_pred ------CEEEEEC-CCCcEEEEecCccCCC-------c-----eEEEEeC-CCCEEEEECCCCEEEEEcCC-CCEEEEeC
Confidence 6899999 6888777664322110 0 1588999 999887766 8899999965 33332221
Q ss_pred --ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccc
Q 005140 358 --LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTK 435 (712)
Q Consensus 358 --~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~ 435 (712)
.+...+..++++|+|+++++ ... ...|..|+ ++|..+...
T Consensus 159 ~~~~~~~p~~i~~~~~g~l~v~-----~~~--~~~i~~~~-----------------------~~g~~~~~~-------- 200 (286)
T 1q7f_A 159 CSKHLEFPNGVVVNDKQEIFIS-----DNR--AHCVKVFN-----------------------YEGQYLRQI-------- 200 (286)
T ss_dssp CTTTCSSEEEEEECSSSEEEEE-----EGG--GTEEEEEE-----------------------TTCCEEEEE--------
T ss_pred CCCccCCcEEEEECCCCCEEEE-----ECC--CCEEEEEc-----------------------CCCCEEEEE--------
Confidence 22345788888888875554 111 22333332 233221110
Q ss_pred ccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC----
Q 005140 436 KSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK---- 511 (712)
Q Consensus 436 ~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~---- 511 (712)
...++...+..++++|+|+.+++...++ ..|.+|+... . .+..+.
T Consensus 201 ----------------------~~~g~~~~p~~i~~d~~G~l~v~~~~~~--~~i~~~~~~g-~------~~~~~~~~~~ 249 (286)
T 1q7f_A 201 ----------------------GGEGITNYPIGVGINSNGEILIADNHNN--FNLTIFTQDG-Q------LISALESKVK 249 (286)
T ss_dssp ----------------------SCTTTSCSEEEEEECTTCCEEEEECSSS--CEEEEECTTS-C------EEEEEEESSC
T ss_pred ----------------------ccCCccCCCcEEEECCCCCEEEEeCCCC--EEEEEECCCC-C------EEEEEcccCC
Confidence 0011234677899999998777765542 1799998532 2 222222
Q ss_pred CCceeEEEEccCCCeEEEEeccCCCceEEEEECCc
Q 005140 512 GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE 546 (712)
Q Consensus 512 ~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~ 546 (712)
...+.+++++|+|+++++ +. ++.|.+|++..
T Consensus 250 ~~~~~~i~~~~~g~l~vs-~~---~~~v~v~~~~~ 280 (286)
T 1q7f_A 250 HAQCFDVALMDDGSVVLA-SK---DYRLYIYRYVQ 280 (286)
T ss_dssp CSCEEEEEEETTTEEEEE-ET---TTEEEEEECSC
T ss_pred CCcceeEEECCCCcEEEE-CC---CCeEEEEEccc
Confidence 123678999999986665 55 89999999864
No 273
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=6.3e-14 Score=116.38 Aligned_cols=78 Identities=18% Similarity=0.220 Sum_probs=70.0
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. |.++.|+.+|+++|||||+|.+.++|.+|++. ||..++++
T Consensus 15 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G~v~~--v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~ 85 (105)
T 2dh8_A 15 EIGKLFVGGLDW------STTQETLRSYFSQYGEVVD--CVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGR 85 (105)
T ss_dssp SSSEECCBSCCT------TCCHHHHHHHHHTTSCEEE--EEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCE
Confidence 357999999997 4458999999999999999 99999998999999999999999999999999 99999985
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 86 -~l~V~~a 92 (105)
T 2dh8_A 86 -NIDPKPC 92 (105)
T ss_dssp -EEBCCCS
T ss_pred -EEEEEEc
Confidence 6766553
No 274
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.46 E-value=3e-11 Score=121.52 Aligned_cols=245 Identities=7% Similarity=-0.029 Sum_probs=146.2
Q ss_pred cCCCcccceEEEcCCCc-EEEEEecCc-eEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEE
Q 005140 210 KRSYWTESFVQWSPLGT-YLATVHRQG-AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVI 287 (712)
Q Consensus 210 ~~~~~~v~~v~~Spdg~-~lat~~~~~-i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I 287 (712)
..+.....+++|+|+|+ +++++..++ |.+|+.. +.......+...+.+++|+|+|+.+++...+ +.|
T Consensus 24 ~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~~----------~~i 92 (296)
T 3e5z_A 24 ADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDD-GQLSPEMHPSHHQNGHCLNKQGHLIACSHGL----------RRL 92 (296)
T ss_dssp ECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETT-SCEEEEESSCSSEEEEEECTTCCEEEEETTT----------TEE
T ss_pred ecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECC-CCeEEEECCCCCcceeeECCCCcEEEEecCC----------CeE
Confidence 33444556899999998 666666555 8899998 4422222233458999999999988887776 789
Q ss_pred EEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEe----c--------------CCeEEEEEcCC
Q 005140 288 NIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKL----G--------------KNMISVYETES 349 (712)
Q Consensus 288 ~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~----~--------------d~~i~iwd~~~ 349 (712)
.+||..+|+............ ... ...++++| +|+++++. . .+.|..++..
T Consensus 93 ~~~d~~~g~~~~~~~~~~~~~----~~~-----~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (296)
T 3e5z_A 93 ERQREPGGEWESIADSFEGKK----LNS-----PNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD- 161 (296)
T ss_dssp EEECSTTCCEEEEECEETTEE----CCC-----CCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-
T ss_pred EEEcCCCCcEEEEeeccCCCC----CCC-----CCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-
Confidence 999988887544332211110 000 11589999 99988863 2 2345555443
Q ss_pred ceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEc
Q 005140 350 FTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVD 429 (712)
Q Consensus 350 ~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~ 429 (712)
+... ...........++|+|+++.|++ . .....|+.|+... +|....
T Consensus 162 g~~~-~~~~~~~~~~gi~~s~dg~~lv~-----~--~~~~~i~~~~~~~---------------------~g~~~~---- 208 (296)
T 3e5z_A 162 GTLS-APIRDRVKPNGLAFLPSGNLLVS-----D--TGDNATHRYCLNA---------------------RGETEY---- 208 (296)
T ss_dssp SCEE-EEECCCSSEEEEEECTTSCEEEE-----E--TTTTEEEEEEECS---------------------SSCEEE----
T ss_pred CCEE-EeecCCCCCccEEECCCCCEEEE-----e--CCCCeEEEEEECC---------------------CCcCcC----
Confidence 3221 12223344678888888887743 2 2223455444321 111000
Q ss_pred ccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEE
Q 005140 430 RYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTT 509 (712)
Q Consensus 430 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~ 509 (712)
...++ ..+...+.+++++++|+.+++. ++ .|.+|+.. +. .+..
T Consensus 209 -----------~~~~~--------------~~~~~~p~~i~~d~~G~l~v~~--~~---~v~~~~~~-g~------~~~~ 251 (296)
T 3e5z_A 209 -----------QGVHF--------------TVEPGKTDGLRVDAGGLIWASA--GD---GVHVLTPD-GD------ELGR 251 (296)
T ss_dssp -----------EEEEE--------------CCSSSCCCSEEEBTTSCEEEEE--TT---EEEEECTT-SC------EEEE
T ss_pred -----------CCeEe--------------eCCCCCCCeEEECCCCCEEEEc--CC---eEEEECCC-CC------EEEE
Confidence 00011 1123445678999999866665 45 79999975 22 2333
Q ss_pred e--CCCceeEEEE-ccCCCeEEEEeccCCCceEEEEECCcceeee
Q 005140 510 L--KGKQANALFW-SPSGRFIVLAGLKGFNGQLEFYNVDELETMA 551 (712)
Q Consensus 510 ~--~~~~v~~l~~-spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~ 551 (712)
+ +.. +++++| +|+++.|++++. +.|.-++..+.++..
T Consensus 252 ~~~~~~-~~~~~f~~~d~~~L~v~t~----~~l~~~~~~~~~~~~ 291 (296)
T 3e5z_A 252 VLTPQT-TSNLCFGGPEGRTLYMTVS----TEFWSIETNVRGLEH 291 (296)
T ss_dssp EECSSC-CCEEEEESTTSCEEEEEET----TEEEEEECSCCBCCC
T ss_pred EECCCC-ceeEEEECCCCCEEEEEcC----CeEEEEEcccccccc
Confidence 3 333 888999 689999998874 456666776555443
No 275
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=5.9e-14 Score=118.21 Aligned_cols=78 Identities=15% Similarity=0.190 Sum_probs=70.2
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCee-eeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVI-KEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v-~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
.++|||+|||. +..+++|+++|++||.| .. |.|+.|+ +|+++|||||+|.+.++|.+|++. ||..++++
T Consensus 15 ~~~l~V~nLp~------~~t~~~l~~~F~~~g~v~~~--v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr 84 (114)
T 2cpy_A 15 KVCAHITNIPF------SITKMDVLQFLEGIPVDENA--VHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGR 84 (114)
T ss_dssp CCEEEEESCCT------TSCHHHHHHHTTTSCCCSTT--EEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTE
T ss_pred ccEEEEeCcCC------cCCHHHHHHHHHhCCCcCCe--EEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCe
Confidence 57999999997 55589999999999999 88 9999999 999999999999999999999987 99999985
Q ss_pred eEEEEEeecc
Q 005140 138 HIFAVNMFDD 147 (712)
Q Consensus 138 ~~l~v~~~~~ 147 (712)
.+.|.....
T Consensus 85 -~i~v~~a~~ 93 (114)
T 2cpy_A 85 -EAFVHVVTL 93 (114)
T ss_dssp -EEEEEEECH
T ss_pred -EEEEEECCH
Confidence 778776554
No 276
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=9.7e-14 Score=116.20 Aligned_cols=79 Identities=18% Similarity=0.278 Sum_probs=70.2
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCe-eeeceEEEe-ccCCCCCcccEEEEEeCCHHHHHHHHHHhC--CCcc
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGV-IKEDGLWMP-VDPETQKSLGYCFIEYNTPQEAELAKEKTN--GYKL 134 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~-v~~~~~~~~-~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~--~~~~ 134 (712)
.++|||+|||. +..+++|+++|++||. |.. +.++ .|+.+|+++|||||+|.+.++|.+|++.|| +..+
T Consensus 8 ~~~l~V~nLp~------~~t~~~l~~~f~~~G~~v~~--v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~ 79 (109)
T 2dis_A 8 NCRLFIGGIPK------MKKREEILEEIAKVTEGVLD--VIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQL 79 (109)
T ss_dssp SEEEEEECCCT------TSCHHHHHHHHHHHSTTEEE--EECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCB
T ss_pred CCEEEEeCCCC------cCCHHHHHHHHHHhcCCceE--EEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCcee
Confidence 56999999997 5558999999999998 999 9999 899899999999999999999999999996 5888
Q ss_pred CCceEEEEEeec
Q 005140 135 DRAHIFAVNMFD 146 (712)
Q Consensus 135 ~~~~~l~v~~~~ 146 (712)
+++ .+.|....
T Consensus 80 ~g~-~l~V~~a~ 90 (109)
T 2dis_A 80 WGH-QIAVDWAE 90 (109)
T ss_dssp TTB-CCEEEESC
T ss_pred cCC-eEEEEEcC
Confidence 885 77777654
No 277
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2.9e-13 Score=111.92 Aligned_cols=79 Identities=15% Similarity=0.212 Sum_probs=68.9
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+.+|+++|++||.|.. +.|+.|+.+|+++|||||+|.+.++|.+|++ ++..++++
T Consensus 14 ~~~~l~v~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~ 83 (103)
T 2cqg_A 14 KTSDLIVLGLPW------KTTEQDLKEYFSTFGEVLM--VQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGR 83 (103)
T ss_dssp CCCCEEEESCCS------SCCHHHHHHHHGGGSCEEE--EEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTE
T ss_pred CCCEEEEEcCCC------cCCHHHHHHHHHhcCCeEE--EEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCe
Confidence 356899999997 4458899999999999999 9999999899999999999999999999999 46777774
Q ss_pred eEEEEEeecc
Q 005140 138 HIFAVNMFDD 147 (712)
Q Consensus 138 ~~l~v~~~~~ 147 (712)
.+.|.....
T Consensus 84 -~l~v~~a~~ 92 (103)
T 2cqg_A 84 -WCDCKLPNS 92 (103)
T ss_dssp -EEEEECCCT
T ss_pred -EEEEEecCC
Confidence 777776543
No 278
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.46 E-value=3e-13 Score=110.97 Aligned_cols=86 Identities=14% Similarity=0.136 Sum_probs=71.7
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCC-CCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPET-QKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~-~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
-+++|+|.||....+ =.+-++.+|++.|++||.|.+ +.++.|+.+ ++++|||||+|.++++|.+|++.|||..+++
T Consensus 7 ~s~~l~l~Nm~~~~~-l~dd~~~dl~~~f~~~G~V~~--v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGE-VDEDLEVETKEECEKYGKVGK--CVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp CCSEEEEESSSCSCC-C---CHHHHHHHGGGGSCEEE--EEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEEcCCChHH-hhHHHHHHHHHHHHhcCCEEE--EEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 467999999983211 113478999999999999999 999999754 7899999999999999999999999999998
Q ss_pred ceEEEEEeecc
Q 005140 137 AHIFAVNMFDD 147 (712)
Q Consensus 137 ~~~l~v~~~~~ 147 (712)
+ .+.|.....
T Consensus 84 r-~i~v~~a~~ 93 (105)
T 2pe8_A 84 R-VVKACFYNL 93 (105)
T ss_dssp E-ECEEEECCH
T ss_pred c-EEEEEEcCH
Confidence 6 888877643
No 279
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2.8e-13 Score=111.98 Aligned_cols=79 Identities=28% Similarity=0.338 Sum_probs=69.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. |.|+.|+. .++|||||+|.+.++|.+|++.|||..+.++
T Consensus 14 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 83 (103)
T 2cqi_A 14 QPRTLYVGNLSR------DVTEVLILQLFSQIGPCKS--CKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGK 83 (103)
T ss_dssp CCCEEEEESCCT------TCCHHHHHHHHHHHSCEEE--EEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEeCCCc------cCCHHHHHHHHHhcCCEeE--EEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCC
Confidence 457999999997 4458999999999999999 99999963 3799999999999999999999999999985
Q ss_pred eEEEEEeecc
Q 005140 138 HIFAVNMFDD 147 (712)
Q Consensus 138 ~~l~v~~~~~ 147 (712)
.+.|.....
T Consensus 84 -~l~V~~a~~ 92 (103)
T 2cqi_A 84 -EVKVNWATT 92 (103)
T ss_dssp -EEEEEECCC
T ss_pred -eEEEEECCC
Confidence 888877543
No 280
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.3e-13 Score=116.80 Aligned_cols=80 Identities=19% Similarity=0.300 Sum_probs=71.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+++|+++|++||.|.. |.|+.|+.+|+++|||||+|.+.++|.+|++. ||..++++
T Consensus 26 ~~~~l~V~nLp~------~~te~~l~~~F~~~G~i~~--v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~ 96 (116)
T 1x4b_A 26 QFRKLFIGGLSF------ETTEESLRNYYEQWGKLTD--CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGR 96 (116)
T ss_dssp HHTEEEEECCTT------CCCHHHHHHHHTSSCCCSE--EEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCEEE--EEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCE
Confidence 357999999997 4448899999999999999 99999998999999999999999999999998 99999885
Q ss_pred eEEEEEeecc
Q 005140 138 HIFAVNMFDD 147 (712)
Q Consensus 138 ~~l~v~~~~~ 147 (712)
.+.|.....
T Consensus 97 -~l~V~~a~~ 105 (116)
T 1x4b_A 97 -VVEPKRAVA 105 (116)
T ss_dssp -EEEEECCSS
T ss_pred -EEEEEECCC
Confidence 888876543
No 281
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.45 E-value=2.1e-10 Score=118.84 Aligned_cols=284 Identities=10% Similarity=-0.030 Sum_probs=170.2
Q ss_pred EEecCCCCEEEEEcC-CCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEe
Q 005140 259 IDFSPGEKYLVTYSS-HEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKL 337 (712)
Q Consensus 259 i~~Spdg~~l~t~s~-d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~ 337 (712)
...+|+++++.+... .. . ...+|.+||..+++.+..+...... .+.+|| ||++++.+
T Consensus 26 ~~~~~~~~~~yv~~~~~~-~-----~~~~v~v~D~~t~~~~~~i~~g~~p---------------~i~~sp-Dg~~lyv~ 83 (373)
T 2mad_H 26 EAPGADGRRSYINLPAHH-S-----AIIQQWVLDAGSGSILGHVNGGFLP---------------NPVAAH-SGSEFALA 83 (373)
T ss_pred ccCCCCCCEEEEeCCccc-C-----CccEEEEEECCCCeEEEEecCCCCC---------------CeEECC-CCCEEEEE
Confidence 345688888877764 20 0 0007899999999988777654322 489999 99988877
Q ss_pred c-----------CCeEEEEEcCCceeccccccc-------ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc
Q 005140 338 G-----------KNMISVYETESFTLIDKKSLK-------VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 399 (712)
Q Consensus 338 ~-----------d~~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 399 (712)
. ++.|.+||..+++.+...... ......+.|+|||++|++ +.......|++++ .+.
T Consensus 84 n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v-----~n~~~~~~v~viD-~t~ 157 (373)
T 2mad_H 84 STSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLF-----FQFAAGPAVGLVV-QGG 157 (373)
T ss_pred eccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEE-----EecCCCCeEEEEE-CCC
Confidence 4 578999999887766443221 123458999999999988 3222245688888 777
Q ss_pred cceee-eeeeeecceeEEECcCCCEEE-EEEcccccccccccccEEEEEEecCCcceeEEE---ecCCCCc-eEEEEEee
Q 005140 400 EELRQ-KNLFSVSDCKMYWQSSGDYLA-VKVDRYTKTKKSTYTGFELFRIKERDIPIEVLE---LDNKNDK-IIAFAWEP 473 (712)
Q Consensus 400 ~~~~~-~~~~~~~~~~~~~s~~g~~l~-~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~---l~~h~~~-v~~~~~sp 473 (712)
+.+.. ..... + +...|++...+ +...++. +.+++. . +....... ......+ .....+.+
T Consensus 158 ~~~~~~i~~~~---~-~~~~~~~~~~~~~~~~dg~---------~~~vd~-~-g~~~~~~~~~~~~~~~~p~~~~~~~~~ 222 (373)
T 2mad_H 158 SSDDQLLSSPT---C-YHIHPGAPSTFYLLCAQGG---------LAKTDH-A-GGAAGAGLVGAMLTAAQNLLTQPAQAN 222 (373)
T ss_pred CEEeEEcCCCc---e-EEEEeCCCceEEEEcCCCC---------EEEEEC-C-CcEEEEEeccccccCCcceeecceeEe
Confidence 66544 33211 1 22334443222 2222222 233333 1 11110010 0001112 23356777
Q ss_pred CCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC------------CCceeEEEEccCCCeEEEEeccC-------
Q 005140 474 KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK------------GKQANALFWSPSGRFIVLAGLKG------- 534 (712)
Q Consensus 474 ~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~------------~~~v~~l~~spdg~~l~~~~~~~------- 534 (712)
++..+++.+..+ .+.+.|+.+.... .+..+. ......++++|+|+.++++....
T Consensus 223 ~~~~~~~~~~~~---~v~vid~~~~~~~----v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~ 295 (373)
T 2mad_H 223 KSGRIVWPVYSG---KILQADISAAGAT----NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHA 295 (373)
T ss_pred cCCEEEEEcCCc---eEEEEeccCCcce----EeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccC
Confidence 777666666555 7888888543211 112111 11233478999999888865310
Q ss_pred CCceEEEEECCcceeeeeccc-cceeeEEECCCCC-EEEEEEccceeccccEEEEEecC-ceeee
Q 005140 535 FNGQLEFYNVDELETMATAEH-FMATDVEWDPTGR-YVATAVTSVHEMENGFNIWSFNG-KLLYR 596 (712)
Q Consensus 535 ~dg~v~iwd~~~~~~~~~~~~-~~v~~~~~spdg~-~l~t~s~~~~~~d~~v~iw~~~g-~~~~~ 596 (712)
..+.|.++|..+++.+.+... ....+++|+|||+ .++++... ++.|.+||... +.+..
T Consensus 296 ~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~----~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 296 AAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAG----TEVLHIYDAGAGDQDQS 356 (373)
T ss_pred CCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCC----CCeEEEEECCCCCEEee
Confidence 146899999999998877544 3588999999999 56665522 79999999874 44444
No 282
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.45 E-value=7.2e-14 Score=121.25 Aligned_cols=79 Identities=25% Similarity=0.453 Sum_probs=72.4
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+.+|+++|++||.|.. +.|+.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 46 ~~~~l~V~nLp~------~~te~~L~~~F~~~G~i~~--v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~ 117 (135)
T 2lea_A 46 GMTSLKVDNLTY------RTSPDTLRRVFEKYGRVGD--VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 117 (135)
T ss_dssp GCCCEEEECCCS------SCHHHHHHHHHGGGSCCSE--EECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSS
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCEEE--EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 467999999998 5569999999999999999 99999999999999999999999999999999999999985
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 118 -~l~V~~a 124 (135)
T 2lea_A 118 -ELRVQMA 124 (135)
T ss_dssp -CCEEEEC
T ss_pred -EEEEEEC
Confidence 7777764
No 283
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=2.8e-13 Score=109.12 Aligned_cols=77 Identities=12% Similarity=0.171 Sum_probs=69.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++| .|.. +.|+.| .+|+++|||||+|.+.++|.+|++ +||..++++
T Consensus 9 ~~~~l~v~nLp~------~~t~~~l~~~F~~~-~i~~--v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr 77 (91)
T 2dgw_A 9 TCHTVKLRGAPF------NVTEKNVMEFLAPL-KPVA--IRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGR 77 (91)
T ss_dssp CCCEEEEECCCS------SCCHHHHHHHHTTS-CCSE--EEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTE
T ss_pred CccEEEEECCCC------CCCHHHHHHHHhhC-CceE--EEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCc
Confidence 457999999997 44589999999999 8999 999999 599999999999999999999999 999999985
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 78 -~i~v~~a~ 85 (91)
T 2dgw_A 78 -YIEVFREK 85 (91)
T ss_dssp -EEEEEEES
T ss_pred -EEEEEECC
Confidence 78877654
No 284
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.45 E-value=1.2e-13 Score=116.85 Aligned_cols=79 Identities=14% Similarity=0.204 Sum_probs=70.2
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCe---eeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGV---IKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~---v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~ 134 (712)
-.++|||+|||. +..+++|+++|++||. |.. |.|+.|+. |+++|||||+|.+.++|++|++ +||..+
T Consensus 16 ~~~~l~V~nLp~------~~te~~l~~~F~~~G~~~~v~~--v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~ 85 (118)
T 2db1_A 16 EGYVVKLRGLPW------SCSIEDVQNFLSDCTIHDGVAG--VHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESM 85 (118)
T ss_dssp CCCEEEEESCCT------TCCHHHHHHHTTTSCBTTGGGG--EEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEE
T ss_pred CCcEEEEeCCCC------CCCHHHHHHHHHHcCCccCcee--EEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeE
Confidence 457999999998 5558999999999999 888 99999995 9999999999999999999999 999999
Q ss_pred CCceEEEEEeecc
Q 005140 135 DRAHIFAVNMFDD 147 (712)
Q Consensus 135 ~~~~~l~v~~~~~ 147 (712)
+++ .+.|.....
T Consensus 86 ~gr-~i~V~~a~~ 97 (118)
T 2db1_A 86 GHR-YIEVFKSHR 97 (118)
T ss_dssp TTE-EEEEEEECH
T ss_pred CCe-EEEEEECCH
Confidence 986 777776543
No 285
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.45 E-value=1.1e-13 Score=118.89 Aligned_cols=77 Identities=16% Similarity=0.192 Sum_probs=70.3
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.++|||+|||. +..+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|+ .|||..++++
T Consensus 36 ~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~- 105 (124)
T 2jwn_A 36 KRSVYVGNVDY------GSTAQDLEAHFSSCGSINR--ITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGR- 105 (124)
T ss_dssp HTEEEEEEECT------TCCHHHHHHHHHTTSCEEE--EEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTE-
T ss_pred CCEEEEeCCCC------CCCHHHHHHHHHhcCCEEE--EEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCe-
Confidence 57999999997 4458999999999999999 999999989999999999999999999999 7999999985
Q ss_pred EEEEEee
Q 005140 139 IFAVNMF 145 (712)
Q Consensus 139 ~l~v~~~ 145 (712)
.+.|...
T Consensus 106 ~l~V~~a 112 (124)
T 2jwn_A 106 TIKVLPK 112 (124)
T ss_dssp ECEEEES
T ss_pred EEEEEEC
Confidence 7777764
No 286
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.45 E-value=2.4e-13 Score=122.47 Aligned_cols=80 Identities=25% Similarity=0.446 Sum_probs=72.9
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 69 ~~~~l~v~nl~~------~~~~~~l~~~F~~~G~v~~--~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 140 (158)
T 2kn4_A 69 GMTSLKVDNLTY------RTSPDTLRRVFEKYGRVGD--VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 140 (158)
T ss_dssp BCCEEEEESCCT------TCCHHHHHHHHHHHSCEEE--EECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSS
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 467999999997 4458999999999999999 99999998999999999999999999999999999999885
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 141 -~l~v~~a~ 148 (158)
T 2kn4_A 141 -ELRVQMAR 148 (158)
T ss_dssp -EEEEEEEC
T ss_pred -EEEEEECC
Confidence 78887654
No 287
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.7e-13 Score=114.24 Aligned_cols=77 Identities=22% Similarity=0.380 Sum_probs=68.6
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.++.|+ +.++|||||+|.+.++|.+|++.|||..++++
T Consensus 28 ~~~~l~V~nLp~------~~te~~l~~~F~~~G~i~~--v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 97 (109)
T 2err_A 28 QPKRLHVSNIPF------RFRDPDLRQMFGQFGKILD--VEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGR 97 (109)
T ss_dssp CCCEEEEESCCT------TCCHHHHHHHGGGTCCCSC--EEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEECCCC------cCCHHHHHHHHHhcCCEEE--EEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 457999999997 4458999999999999999 9999996 45999999999999999999999999999985
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 98 -~l~V~~a 104 (109)
T 2err_A 98 -KIEVNNA 104 (109)
T ss_dssp -ECEEEEC
T ss_pred -EEEEEEC
Confidence 7777654
No 288
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1.2e-13 Score=114.11 Aligned_cols=77 Identities=16% Similarity=0.274 Sum_probs=68.2
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
..+|||+|||. +..+++|+++|++| .|.. |.|++|+ +|+++|||||+|.++++|.+|+ .+||..++++
T Consensus 16 ~~~v~V~nLp~------~~te~dl~~~F~~~-~v~~--v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr- 83 (109)
T 2dnn_A 16 DLYVSVHGMPF------SAMENDVRDFFHGL-RVDA--VHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQR- 83 (109)
T ss_dssp HHEEEEECCCS------SCCHHHHHHHTTTS-CCCE--EEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTE-
T ss_pred CCEEEEeCCCC------CCCHHHHHHHhccC-CeeE--EEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCe-
Confidence 36999999998 55599999999999 8888 9999998 5999999999999999999999 6999999986
Q ss_pred EEEEEeecc
Q 005140 139 IFAVNMFDD 147 (712)
Q Consensus 139 ~l~v~~~~~ 147 (712)
.+.|.....
T Consensus 84 ~i~V~~a~~ 92 (109)
T 2dnn_A 84 YVEVSPATE 92 (109)
T ss_dssp EEEEEECCH
T ss_pred EEEEEECCc
Confidence 777766543
No 289
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.45 E-value=1.9e-13 Score=123.65 Aligned_cols=79 Identities=30% Similarity=0.420 Sum_probs=71.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+++|||+|||. ...+..|+++|++||.|.. |.|+.|+.+|+++|||||+|.+.++|.+|++.|||..|.++
T Consensus 71 ~~~~l~V~nLp~------~~t~~~L~~~F~~~G~i~~--v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 142 (165)
T 1rk8_A 71 EGWILFVTSIHE------EAQEDEIQEKFCDYGEIKN--IHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ 142 (165)
T ss_dssp -CEEEEEESCCT------TCCHHHHHHHHGGGSCEEE--EEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHhhcCCCEEE--EEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 467899999997 4458999999999999999 99999999999999999999999999999999999999885
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 143 -~l~V~~a 149 (165)
T 1rk8_A 143 -TIQVDWC 149 (165)
T ss_dssp -ECEEEES
T ss_pred -EEEEEEe
Confidence 7777664
No 290
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=5.4e-13 Score=112.58 Aligned_cols=70 Identities=17% Similarity=0.222 Sum_probs=64.8
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.|+.|+ +|+++|||||+|.+.++|.+|++.|||..+++
T Consensus 24 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~ 93 (114)
T 1x5o_A 24 DPTNLYISNLPL------SMDEQELENMLKPFGQVIS--TRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKT 93 (114)
T ss_dssp CTTEEEEESCCT------TCCHHHHHHTTTTTSCEEE--EEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCC
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCEEE--EEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcC
Confidence 457999999997 4458899999999999999 9999999 99999999999999999999999999999964
No 291
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.44 E-value=2.6e-11 Score=138.51 Aligned_cols=252 Identities=10% Similarity=0.055 Sum_probs=148.8
Q ss_pred eEEecCCCCCEEEEec--C----CeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCC-------CCCCe
Q 005140 323 VFRWGGGKDKYFAKLG--K----NMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGG-------GNQPA 389 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~--d----~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~-------~~~~~ 389 (712)
.++||| ||++||.+. + ..|++||+.+++.+... .....+..++|+|| +.|++....... .+...
T Consensus 167 ~~~~SP-DG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~ 243 (741)
T 1yr2_A 167 AWAASD-DGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQ 243 (741)
T ss_dssp EEEECT-TSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCC
T ss_pred eEEECC-CCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCC
Confidence 689999 999999876 2 36999999998875421 11112368899999 988874321100 00145
Q ss_pred EEEEEecCCccc----eeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcc-eeEEEecCCCC
Q 005140 390 RVSLVQIPSKEE----LRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIP-IEVLELDNKND 464 (712)
Q Consensus 390 ~i~~~~~~~~~~----~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~l~~h~~ 464 (712)
+|+.+++.+... +............+.|+|+|++|++.+.+.. .....+.++++...... . ..+..+..
T Consensus 244 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~----~~~~~l~~~d~~~~~~~~~--~~l~~~~~ 317 (741)
T 1yr2_A 244 TVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGT----DPVNTVHVARVTNGKIGPV--TALIPDLK 317 (741)
T ss_dssp EEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTT----CSCCEEEEEEEETTEECCC--EEEECSSS
T ss_pred EEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccC----CCcceEEEEECCCCCCccc--EEecCCCC
Confidence 688998866542 1111111112456789999999999876542 01223566666543112 2 33334444
Q ss_pred ceEEEEEeeCCCEEEEEEcCC-CCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEE
Q 005140 465 KIIAFAWEPKGHRFAVIHGDS-PRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYN 543 (712)
Q Consensus 465 ~v~~~~~sp~g~~l~~~~~d~-~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd 543 (712)
.+... ++|+|+.|++.+..+ +...|.+|++.++. ..+..+..-....+..++|+ ++.++++... ++..+||.
T Consensus 318 ~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~--~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~---dg~~~l~~ 390 (741)
T 1yr2_A 318 AQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST--PRFDTVVPESKDNLESVGIA-GNRLFASYIH---DAKSQVLA 390 (741)
T ss_dssp SCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSS--CEEEEEECCCSSEEEEEEEE-BTEEEEEEEE---TTEEEEEE
T ss_pred ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc--cccEEEecCCCCeEEEEEEE-CCEEEEEEEE---CCEEEEEE
Confidence 55555 459999999988753 23478899986532 11222221112245667777 5556666665 66655554
Q ss_pred CC-cceeeee--c-cccceeeEEECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 544 VD-ELETMAT--A-EHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 544 ~~-~~~~~~~--~-~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
++ ++..... . +...+..++++|+|+.|+....+ ....+.+++|++.+
T Consensus 391 ~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss-~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 391 FDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSS-FTQPATVLALDPAT 441 (741)
T ss_dssp EETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEE-TTEEEEEEEEETTT
T ss_pred EeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcC-CCCCCEEEEEECCC
Confidence 33 2333332 2 35678899999999876654432 01157888998764
No 292
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=6.3e-13 Score=109.87 Aligned_cols=78 Identities=22% Similarity=0.372 Sum_probs=68.9
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.|+.|+. .++|||||+|.+.++|.+|++.|||..++++
T Consensus 14 ~~~~l~V~nlp~------~~t~~~l~~~f~~~G~v~~--v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 83 (103)
T 2cq3_A 14 TPKRLHVSNIPF------RFRDPDLRQMFGQFGKILD--VEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGR 83 (103)
T ss_dssp CCCEEEEESCCT------TCCHHHHHHHGGGTSCEEE--EEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 457999999997 4458899999999999999 99999973 4999999999999999999999999999985
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 84 -~l~v~~a~ 91 (103)
T 2cq3_A 84 -KIEVNNAT 91 (103)
T ss_dssp -ECEEEECC
T ss_pred -EEEEEEcc
Confidence 77777643
No 293
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.7e-13 Score=112.02 Aligned_cols=78 Identities=19% Similarity=0.332 Sum_probs=67.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+++|+++|++||.|.+ .+.|+.| .+|+++|||||+|.++++|.+|++. ||..++++
T Consensus 14 ~~~~l~V~nLp~------~~te~~l~~~F~~~G~v~~-~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr 84 (104)
T 1wg5_A 14 NDGFVRLRGLPF------GCSKEEIVQFFSGLEIVPN-GMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHR 84 (104)
T ss_dssp CCCEEEEESCCT------TCCHHHHHHHTTTCCEEEE-EEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSS
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCcce-eEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCc
Confidence 357999999998 5559999999999999863 2789999 5999999999999999999999998 99999886
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 85 -~i~v~~~ 91 (104)
T 1wg5_A 85 -YIEIFKS 91 (104)
T ss_dssp -CCEEEEE
T ss_pred -EEEEEEC
Confidence 6676654
No 294
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.44 E-value=7.4e-11 Score=118.64 Aligned_cols=254 Identities=11% Similarity=0.065 Sum_probs=150.2
Q ss_pred CeeEEEecCCCC-EEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCE
Q 005140 255 QVKLIDFSPGEK-YLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 333 (712)
Q Consensus 255 ~v~~i~~Spdg~-~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ 333 (712)
...+++|+|+|+ .++++..+ +.|..|+..++ .+.+..+..... .+++++ +|++
T Consensus 29 ~~eg~~~d~~g~~l~~~~~~~----------~~i~~~~~~~~--~~~~~~~~~~~~-------------~l~~~~-dg~l 82 (296)
T 3e5z_A 29 WTEGPVYVPARSAVIFSDVRQ----------NRTWAWSDDGQ--LSPEMHPSHHQN-------------GHCLNK-QGHL 82 (296)
T ss_dssp SEEEEEEEGGGTEEEEEEGGG----------TEEEEEETTSC--EEEEESSCSSEE-------------EEEECT-TCCE
T ss_pred cccCCeEeCCCCEEEEEeCCC----------CEEEEEECCCC--eEEEECCCCCcc-------------eeeECC-CCcE
Confidence 478999999998 66677777 78999998776 555554433321 689999 9998
Q ss_pred EEEec-CCeEEEEEcCCceeccccc----ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeee
Q 005140 334 FAKLG-KNMISVYETESFTLIDKKS----LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLF 408 (712)
Q Consensus 334 la~~~-d~~i~iwd~~~~~~~~~~~----~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 408 (712)
+++.. ++.|.+|+..+++...... .....+.+++++|+|+++++ .+..+... ...... .
T Consensus 83 ~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vt-----d~~~g~~~-------~~~~~~--~-- 146 (296)
T 3e5z_A 83 IACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFS-----DPTYGIDK-------PEEGYG--G-- 146 (296)
T ss_dssp EEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEE-----ECSHHHHC-------GGGSSC--C--
T ss_pred EEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEE-----CCcccccc-------cccccc--c--
Confidence 88777 7899999987766432111 11223567888888886664 11000000 000000 0
Q ss_pred eecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCC
Q 005140 409 SVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRP 488 (712)
Q Consensus 409 ~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~ 488 (712)
..... .-.||.+...+. . ..+..+......++|+|+|+.+++...++
T Consensus 147 -------~~~~~--------------------~~~l~~~~~~g~-~--~~~~~~~~~~~gi~~s~dg~~lv~~~~~~--- 193 (296)
T 3e5z_A 147 -------EMELP--------------------GRWVFRLAPDGT-L--SAPIRDRVKPNGLAFLPSGNLLVSDTGDN--- 193 (296)
T ss_dssp -------CCCSS--------------------SCEEEEECTTSC-E--EEEECCCSSEEEEEECTTSCEEEEETTTT---
T ss_pred -------cccCC--------------------CcEEEEECCCCC-E--EEeecCCCCCccEEECCCCCEEEEeCCCC---
Confidence 00000 012222222111 0 11113345667899999999984444455
Q ss_pred eEEEEEee-cccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEE-C
Q 005140 489 DISFYSMR-TAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEW-D 564 (712)
Q Consensus 489 ~v~i~d~~-~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~-s 564 (712)
.|.+|++. ++........+ ......+..++++++|+++++. ++.|.+|+.+ ++.+.. .+.. +++++| +
T Consensus 194 ~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~-----~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~ 265 (296)
T 3e5z_A 194 ATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA-----GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGG 265 (296)
T ss_dssp EEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE-----TTEEEEECTT-SCEEEEEECSSC-CCEEEEES
T ss_pred eEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc-----CCeEEEECCC-CCEEEEEECCCC-ceeEEEEC
Confidence 89999986 22210001112 2223356789999999866654 4689999987 555443 3334 889999 6
Q ss_pred CCCCEEEEEEccceeccccEEEEEecCceeeee
Q 005140 565 PTGRYVATAVTSVHEMENGFNIWSFNGKLLYRT 597 (712)
Q Consensus 565 pdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~ 597 (712)
|+++.|++++. + .+.-++.....+.+.
T Consensus 266 ~d~~~L~v~t~-----~-~l~~~~~~~~~~~~~ 292 (296)
T 3e5z_A 266 PEGRTLYMTVS-----T-EFWSIETNVRGLEHH 292 (296)
T ss_dssp TTSCEEEEEET-----T-EEEEEECSCCBCCC-
T ss_pred CCCCEEEEEcC-----C-eEEEEEccccccccc
Confidence 99999999887 4 444455554444433
No 295
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.43 E-value=1.3e-13 Score=131.33 Aligned_cols=80 Identities=11% Similarity=0.081 Sum_probs=71.7
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccC--eeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIG--VIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g--~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 135 (712)
-.++|||+|||. ...+.+|+++|++|| .|.+ |.|++|+.||++||||||+|.+.++|.+|++.|||..|+
T Consensus 67 ~~~~lfVgnL~~------~~te~~L~~~F~~~G~~~v~~--v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~ 138 (229)
T 3q2s_C 67 KRIALYIGNLTW------WTTDEDLTEAVHSLGVNDILE--IKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH 138 (229)
T ss_dssp --CEEEEESCCT------TCCHHHHHHHHHTTTCCCEEE--EEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBT
T ss_pred CccEEEEeCCCC------CCCHHHHHHHHHHHCCcceEE--EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeEC
Confidence 567899999997 455899999999999 9999 999999999999999999999999999999999999999
Q ss_pred CceEEEEEeec
Q 005140 136 RAHIFAVNMFD 146 (712)
Q Consensus 136 ~~~~l~v~~~~ 146 (712)
++ .+.|....
T Consensus 139 Gr-~l~V~~a~ 148 (229)
T 3q2s_C 139 GQ-NPVVTPVN 148 (229)
T ss_dssp TB-CCEEEECC
T ss_pred CE-EeEEEECC
Confidence 86 77777643
No 296
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.43 E-value=9.1e-14 Score=115.54 Aligned_cols=79 Identities=15% Similarity=0.170 Sum_probs=69.0
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCe---eeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCc
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGV---IKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYK 133 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~---v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~ 133 (712)
.-.++|||+|||. +..+++|+++|++||. |.. |.|+.|+. |+++|||||+|.+.++|.+|++ +||..
T Consensus 9 ~~~~~l~V~nLp~------~~te~~l~~~F~~~g~~~~v~~--v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~ 78 (107)
T 2lmi_A 9 DDVFLIRAQGLPW------SCTMEDVLNFFSDCRIRNGENG--IHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMY 78 (107)
T ss_dssp SSCCEEEEECCCS------SCCSHHHHHHTTTSCBTTTTTT--EECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCC
T ss_pred CCccEEEEeCCCC------CCCHHHHHHHHHhcCCcCCcce--EEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcce
Confidence 3467999999997 4458899999999998 888 99999996 9999999999999999999999 99999
Q ss_pred cCCceEEEEEeec
Q 005140 134 LDRAHIFAVNMFD 146 (712)
Q Consensus 134 ~~~~~~l~v~~~~ 146 (712)
++++ .+.|....
T Consensus 79 ~~gr-~i~V~~a~ 90 (107)
T 2lmi_A 79 MGQR-YVEVYEIN 90 (107)
T ss_dssp SSSS-CCCCEECC
T ss_pred eCCe-EEEEEECC
Confidence 9886 66665543
No 297
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=9.8e-14 Score=117.16 Aligned_cols=79 Identities=15% Similarity=0.162 Sum_probs=68.2
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCee----eeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVI----KEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGY 132 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v----~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~ 132 (712)
.-..+|||+|||. +..+++|+++|++||.| .. |.|+.|+ +|+++|||||+|.+.++|.+|++. |+.
T Consensus 21 ~~~~~v~V~nLp~------~~te~dl~~~F~~~g~v~g~v~~--v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~ 90 (123)
T 2dha_A 21 ENQVIVRMRGLPF------TATAEEVVAFFGQHCPITGGKEG--ILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKD 90 (123)
T ss_dssp CSCCEEEECSCCT------TCCHHHHHHHHHTTSCCTTGGGG--EEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTE
T ss_pred CCCCEEEEeCCCC------CCCHHHHHHHHHhhCCccCCcce--EEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCC
Confidence 3467999999998 55599999999999986 56 9999996 999999999999999999999996 999
Q ss_pred ccCCceEEEEEeec
Q 005140 133 KLDRAHIFAVNMFD 146 (712)
Q Consensus 133 ~~~~~~~l~v~~~~ 146 (712)
.++++ .+.|....
T Consensus 91 ~l~gR-~i~V~~a~ 103 (123)
T 2dha_A 91 LLGKR-YIELFRST 103 (123)
T ss_dssp ESSSC-EECCEEEC
T ss_pred eeCCe-EEEEEECC
Confidence 88886 66665543
No 298
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=2.9e-13 Score=112.71 Aligned_cols=73 Identities=21% Similarity=0.240 Sum_probs=63.8
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCC--CccC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNG--YKLD 135 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~--~~~~ 135 (712)
-+++|||+|||. +..+.+|+++|++||.|.+ +.|+.| ||||||+|++.++|.+|++.+|+ ..+.
T Consensus 30 ps~~LfVgNLp~------~vte~dL~~lF~~fG~V~~--v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~ 95 (119)
T 2ad9_A 30 PSRVIHIRKLPI------DVTEGEVISLGLPFGKVTN--LLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLR 95 (119)
T ss_dssp CCSEEEEESCCT------TCCHHHHHHHHTTTSCCCE--EEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBT
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCEEE--EEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 367999999997 5558999999999999999 999976 79999999999999999999874 6788
Q ss_pred CceEEEEEee
Q 005140 136 RAHIFAVNMF 145 (712)
Q Consensus 136 ~~~~l~v~~~ 145 (712)
++ .+.|...
T Consensus 96 Gr-~l~V~~a 104 (119)
T 2ad9_A 96 GQ-PIYIQFS 104 (119)
T ss_dssp TB-CCEEEEC
T ss_pred Ce-EEEEEEc
Confidence 86 7777764
No 299
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.42 E-value=2.9e-13 Score=109.76 Aligned_cols=79 Identities=13% Similarity=0.165 Sum_probs=66.0
Q ss_pred CCCEEEECCCCC-CCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCc--c
Q 005140 58 FGNIIVVDNLPV-VPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYK--L 134 (712)
Q Consensus 58 ~~~~~~v~~lp~-~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~--~ 134 (712)
-+++|||+|||. -.. +.+|+++|++||.|.+ +.|+.| ||||||+|++.++|.+|++.||+.. +
T Consensus 14 p~~~l~V~nLp~~~~t------e~dL~~lF~~fG~V~~--v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~ 79 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNL------RYQLLQLVEPFGVISN--HLILNK------INEAFIEMATTEDAQAAVDYYTTTPALV 79 (102)
T ss_dssp CCCEEEEESCCCSSSH------HHHHHTTTGGGSCEEE--EEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEE
T ss_pred CCCEEEEeCCCCCcCC------HHHHHHHHHhcCCEEE--EEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceE
Confidence 467999999997 444 8899999999999999 999875 4899999999999999999998754 7
Q ss_pred CCceEEEEEeecccccc
Q 005140 135 DRAHIFAVNMFDDFDKF 151 (712)
Q Consensus 135 ~~~~~l~v~~~~~~~~~ 151 (712)
.++ .+.|.......++
T Consensus 80 ~Gr-~l~V~~a~~~~~~ 95 (102)
T 1x4d_A 80 FGK-PVRVHLSQKYKRI 95 (102)
T ss_dssp TTE-ECEEEEECCCTTS
T ss_pred CCc-EEEEEECCCCCCC
Confidence 875 8888776544333
No 300
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.42 E-value=4.3e-11 Score=124.54 Aligned_cols=296 Identities=11% Similarity=0.045 Sum_probs=184.7
Q ss_pred CCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec----
Q 005140 263 PGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG---- 338 (712)
Q Consensus 263 pdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~---- 338 (712)
|+++++++....... .. +.|.++|+.+++.+..+...... .+.+|| ||++++.+.
T Consensus 82 ~~~~~vyV~n~~~~~----~~-~~VsVID~~t~~vv~~I~vG~~P---------------gia~Sp-Dgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFA----AI-TQQFVIDGSTGRILGMTDGGFLP---------------HPVAAE-DGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTC----SS-EEEEEEETTTTEEEEEEEECSSC---------------EEEECT-TSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCC----CC-CeEEEEECCCCEEEEEEECCCCC---------------ceEECC-CCCEEEEEecccc
Confidence 577777766653100 00 58999999999999888754322 489999 999776653
Q ss_pred -------CCeEEEEEcCCceeccccccc-------ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceee
Q 005140 339 -------KNMISVYETESFTLIDKKSLK-------VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ 404 (712)
Q Consensus 339 -------d~~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (712)
++.|.++|..+++.+....+. ......+.++|||++|.+ +.......|.++|..+.+.+..
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV-----~n~~~~~~VsVID~~t~kvv~~ 215 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLF-----YQFSPAPAVGVVDLEGKTFDRM 215 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEE-----EECSSSCEEEEEETTTTEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEE-----EecCCCCeEEEEECCCCeEEEE
Confidence 568999999998877554332 123568999999999987 3233356789999998887665
Q ss_pred eeeeee-------cceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCc-eEEEEEeeCCC
Q 005140 405 KNLFSV-------SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDK-IIAFAWEPKGH 476 (712)
Q Consensus 405 ~~~~~~-------~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~-v~~~~~sp~g~ 476 (712)
...... ...-+.++++|+.+++....+. +. .... . .+.. ...+ ...+.+++++.
T Consensus 216 I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~---------v~-~~~~-~-----~~~v--~~~p~~~~~~~~~dg~ 277 (426)
T 3c75_H 216 LDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGE---------TK-VTNT-E-----VFHT--EDELLINHPAFSLRSG 277 (426)
T ss_dssp EECCSEEEEEEEETTEEEEEETTSSEEEEECCTTC---------CE-EEEC-C-----CCSC--TTSCBCSCCEECTTTC
T ss_pred EEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCc---------EE-EEee-e-----eecc--CCCceeeEeeecCCCC
Confidence 543211 1111344556655554442221 00 0000 0 0001 0111 12357889999
Q ss_pred EEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC---------CCceeEEEEccCCCeEEEEeccC-------CCceEE
Q 005140 477 RFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK---------GKQANALFWSPSGRFIVLAGLKG-------FNGQLE 540 (712)
Q Consensus 477 ~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~---------~~~v~~l~~spdg~~l~~~~~~~-------~dg~v~ 540 (712)
.+++.+..+ .|.+.|+.+.... -...+.... ......++++|+|+.++++.... ..+.|.
T Consensus 278 ~~~~~s~~g---~V~ViD~~~~~~~-v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~Vs 353 (426)
T 3c75_H 278 RLVWPTYTG---KIFQADLTAEGAT-FRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVV 353 (426)
T ss_dssp EEEEEBTTS---EEEEEEECSSCEE-ECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEE
T ss_pred EEEEEeCCC---cEEEEeccCCceE-EeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEE
Confidence 888887766 8999998543210 000111000 01123479999999888765310 146899
Q ss_pred EEECCcceeeeecccc-ceeeEEECCCCC-EEEEEEccceeccccEEEEEec-Cceeeee-cccceeeeEEecC
Q 005140 541 FYNVDELETMATAEHF-MATDVEWDPTGR-YVATAVTSVHEMENGFNIWSFN-GKLLYRT-LKDHFFQFLWRPR 610 (712)
Q Consensus 541 iwd~~~~~~~~~~~~~-~v~~~~~spdg~-~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~-~~~~i~~~~w~p~ 610 (712)
++|..+++.+.+...+ ....+.|+|||+ +++++... ++.|.++|.. ++.+... ..+.-..+..+||
T Consensus 354 VID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~----s~~VsVID~~t~kvv~tI~~vG~~P~~i~~~~ 423 (426)
T 3c75_H 354 VLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAG----TQTLHIYDAATGEELRSVDQLGRGPQIITTHD 423 (426)
T ss_dssp EEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETT----TTEEEEEETTTCCEEEEECCCSSSCCEEECCC
T ss_pred EEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCC----CCeEEEEECCCCCEEEEecCCCCCCcEEEcCC
Confidence 9999999998876543 488999999999 77777732 7999999987 4555553 3454445666664
No 301
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=4.6e-13 Score=108.84 Aligned_cols=74 Identities=15% Similarity=0.125 Sum_probs=63.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHh--CCCccC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKT--NGYKLD 135 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~--~~~~~~ 135 (712)
-+++|||+|||. +..+++|+++|++||.|.+ +.|+.+ ||||||+|++.++|.+|++.| ++..+.
T Consensus 14 p~~~l~V~nLp~------~~te~~L~~~F~~fG~v~~--v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~ 79 (101)
T 2cq1_A 14 PSRVLHIRKLPG------EVTETEVIALGLPFGKVTN--ILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLR 79 (101)
T ss_dssp CCSEEEEESCCT------TCCHHHHHHTTTTTSCEEE--EEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCEEE--EEEECC------CCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 457999999997 5558999999999999999 988865 799999999999999999976 467788
Q ss_pred CceEEEEEeec
Q 005140 136 RAHIFAVNMFD 146 (712)
Q Consensus 136 ~~~~l~v~~~~ 146 (712)
++ .+.|....
T Consensus 80 Gr-~l~V~~a~ 89 (101)
T 2cq1_A 80 NQ-PIYIQYSN 89 (101)
T ss_dssp TE-ECEEEECS
T ss_pred Cc-EEEEEEcC
Confidence 85 77777643
No 302
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=1.9e-13 Score=117.09 Aligned_cols=80 Identities=13% Similarity=0.212 Sum_probs=70.0
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+++|+++|++||.|.. +.++.+..+|+++|||||+|.+.++|.+|++ +||..|+++
T Consensus 24 ~~~~l~V~nLp~------~~te~~l~~~F~~~G~v~~--~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr 94 (124)
T 1wel_A 24 AGFCVYLKGLPF------EAENKHVIDFFKKLDIVED--SIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNR 94 (124)
T ss_dssp CCCEEEEECCCT------TCCHHHHHHHSCSSCBCTT--TCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTS
T ss_pred CCcEEEEeCCCC------CCCHHHHHHHHHhcCCccc--eEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCc
Confidence 457999999997 5558999999999999987 7777777799999999999999999999999 999999986
Q ss_pred eEEEEEeecc
Q 005140 138 HIFAVNMFDD 147 (712)
Q Consensus 138 ~~l~v~~~~~ 147 (712)
.+.|.....
T Consensus 95 -~i~V~~a~~ 103 (124)
T 1wel_A 95 -FIQVHPITK 103 (124)
T ss_dssp -CBEEEEECH
T ss_pred -EEEEEECCH
Confidence 777766443
No 303
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.42 E-value=2.1e-13 Score=112.73 Aligned_cols=75 Identities=13% Similarity=0.026 Sum_probs=65.8
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccC-eeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIG-VIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g-~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
-.++|||+|||. +..+++|+++|++|| .|.. +.++.+ +++|||||+|.+.++|++|++.|||..+++
T Consensus 27 ~~~~l~VgnLp~------~~te~dL~~~F~~~G~~v~~--v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G 94 (111)
T 2jvr_A 27 KRYRITMKNLPE------GCSWQDLKDLARENSLETTF--SSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRG 94 (111)
T ss_dssp CCEEEEEECSSC------CCCHHHHHHHHHHHTCCCSE--EECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETT
T ss_pred CCCEEEEECCCC------CCCHHHHHHHHHHhCCeeEE--EEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 357999999997 445899999999999 8998 888643 589999999999999999999999999998
Q ss_pred ceEEEEEee
Q 005140 137 AHIFAVNMF 145 (712)
Q Consensus 137 ~~~l~v~~~ 145 (712)
+ .+.|...
T Consensus 95 r-~i~V~~a 102 (111)
T 2jvr_A 95 S-VITVERD 102 (111)
T ss_dssp E-EEEEEES
T ss_pred e-EEEEEEC
Confidence 6 7888764
No 304
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.42 E-value=6.4e-13 Score=109.07 Aligned_cols=86 Identities=17% Similarity=0.350 Sum_probs=72.2
Q ss_pred CCEEEECCCC----CCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCC--CCcccEEEEEeCCHHHHHHHHHHhCCC
Q 005140 59 GNIIVVDNLP----VVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPET--QKSLGYCFIEYNTPQEAELAKEKTNGY 132 (712)
Q Consensus 59 ~~~~~v~~lp----~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~--~~~~g~~fv~~~~~~~a~~a~~~~~~~ 132 (712)
+++|++.|+= ...+.-++.++++|++.|++||.|.+ +.||.|+.+ ++++|||||+|.++++|.+|++.|||.
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~--v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKS--IEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEE--EECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEE--EEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 5689999983 22333355688999999999999999 999999865 478999999999999999999999999
Q ss_pred ccCCceEEEEEeecc
Q 005140 133 KLDRAHIFAVNMFDD 147 (712)
Q Consensus 133 ~~~~~~~l~v~~~~~ 147 (712)
.++++ .+.|..+..
T Consensus 83 ~f~GR-~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANR-VVVTKYCDP 96 (105)
T ss_dssp EETTE-ECEEEEECH
T ss_pred EeCCC-EEEEEEeCH
Confidence 99986 888776543
No 305
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.41 E-value=9.8e-11 Score=119.54 Aligned_cols=278 Identities=13% Similarity=0.071 Sum_probs=165.8
Q ss_pred eEEEEEC-----CeeEEEecCCCCCCCcccc-c-----CCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee
Q 005140 184 QFVIRSG-----TDTEVLWNDARHLKPEPVY-K-----RSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY 251 (712)
Q Consensus 184 ~~~~~~~-----~~~~~~w~~~~~~~~~~~~-~-----~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~ 251 (712)
.|++-.+ ++++.+++. ..++....+ . ........+++.. +++.++...++ |.+||.. +++.+.++
T Consensus 4 ~~v~neg~~g~~~~~l~~~d~-~t~~~~~~i~~~~n~~~lg~~~~~i~~~~-~~lyv~~~~~~~v~viD~~-t~~~~~~i 80 (328)
T 3dsm_A 4 LFITNEGNFQYSNATLSYYDP-ATCEVENEVFYRANGFKLGDVAQSMVIRD-GIGWIVVNNSHVIFAIDIN-TFKEVGRI 80 (328)
T ss_dssp EEEEECCCTTSCCBEEEEEET-TTTEEECSHHHHHHSSCCBSCEEEEEEET-TEEEEEEGGGTEEEEEETT-TCCEEEEE
T ss_pred EEEEecCCCCCCCceEEEEEC-CCCEEhhhhHhhhcCcccCccceEEEEEC-CEEEEEEcCCCEEEEEECc-ccEEEEEc
Confidence 4555555 677778887 333322211 1 1112345577743 44444444444 8899999 88887777
Q ss_pred cC-CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCC
Q 005140 252 AH-PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGK 330 (712)
Q Consensus 252 ~~-~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d 330 (712)
.. .....++++|+|+..++...+ +.|.+||..+++....+....... ....+. .+++ . +
T Consensus 81 ~~~~~p~~i~~~~~g~lyv~~~~~----------~~v~~iD~~t~~~~~~i~~g~~~~---~~~~p~-----~i~~-~-~ 140 (328)
T 3dsm_A 81 TGFTSPRYIHFLSDEKAYVTQIWD----------YRIFIINPKTYEITGYIECPDMDM---ESGSTE-----QMVQ-Y-G 140 (328)
T ss_dssp ECCSSEEEEEEEETTEEEEEEBSC----------SEEEEEETTTTEEEEEEECTTCCT---TTCBCC-----CEEE-E-T
T ss_pred CCCCCCcEEEEeCCCeEEEEECCC----------CeEEEEECCCCeEEEEEEcCCccc---cCCCcc-----eEEE-E-C
Confidence 53 458999999999554554366 789999999998877766443100 000011 3566 5 6
Q ss_pred CCEEEEe-c-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCC--------CeEEEEEecCCcc
Q 005140 331 DKYFAKL-G-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQ--------PARVSLVQIPSKE 400 (712)
Q Consensus 331 g~~la~~-~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~--------~~~i~~~~~~~~~ 400 (712)
+..+++. + ++.|.++|+.+++.+..... ......+.++|+|+++++ +..+. ...|+.++..+.+
T Consensus 141 ~~lyv~~~~~~~~v~viD~~t~~~~~~i~~-g~~p~~i~~~~dG~l~v~-----~~~~~~~~~~~~~~~~v~~id~~t~~ 214 (328)
T 3dsm_A 141 KYVYVNCWSYQNRILKIDTETDKVVDELTI-GIQPTSLVMDKYNKMWTI-----TDGGYEGSPYGYEAPSLYRIDAETFT 214 (328)
T ss_dssp TEEEEEECTTCCEEEEEETTTTEEEEEEEC-SSCBCCCEECTTSEEEEE-----BCCBCTTCSSCBCCCEEEEEETTTTE
T ss_pred CEEEEEcCCCCCEEEEEECCCCeEEEEEEc-CCCccceEEcCCCCEEEE-----ECCCccCCccccCCceEEEEECCCCe
Confidence 6655554 2 88999999998887654432 234678899999986655 21110 1334444332211
Q ss_pred ceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEE
Q 005140 401 ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAV 480 (712)
Q Consensus 401 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~ 480 (712)
.. ..+.++ .......++|+|+++++++
T Consensus 215 v~----------------------------------------------------~~~~~~-~g~~p~~la~~~d~~~lyv 241 (328)
T 3dsm_A 215 VE----------------------------------------------------KQFKFK-LGDWPSEVQLNGTRDTLYW 241 (328)
T ss_dssp EE----------------------------------------------------EEEECC-TTCCCEEEEECTTSCEEEE
T ss_pred EE----------------------------------------------------EEEecC-CCCCceeEEEecCCCEEEE
Confidence 00 011121 1235778999999998888
Q ss_pred EEcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEecc--CCCceEEEEECCcceeeeec
Q 005140 481 IHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLK--GFNGQLEFYNVDELETMATA 553 (712)
Q Consensus 481 ~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~~--~~dg~v~iwd~~~~~~~~~~ 553 (712)
+.. .|.+||..++... ....+. ......++++|++..|+++... ..++.|.+||.. ++.+.+.
T Consensus 242 ~~~-----~v~~~d~~t~~~~----~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i 308 (328)
T 3dsm_A 242 INN-----DIWRMPVEADRVP----VRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF 308 (328)
T ss_dssp ESS-----SEEEEETTCSSCC----SSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred Ecc-----EEEEEECCCCcee----eeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence 654 6888998665421 001111 3457889999965555555411 027899999998 7766553
No 306
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.41 E-value=3.9e-11 Score=122.68 Aligned_cols=246 Identities=12% Similarity=0.080 Sum_probs=146.4
Q ss_pred cccceEEEcCCCcEEEEEecC-------------------------ceEEeecccCcceeeeecC---CCeeEEEecCCC
Q 005140 214 WTESFVQWSPLGTYLATVHRQ-------------------------GAAVWGGANTFNRLMRYAH---PQVKLIDFSPGE 265 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~~-------------------------~i~iw~~~~~~~~~~~~~~---~~v~~i~~Spdg 265 (712)
..+.+++++|+|+++++...+ .|.+||.. +++.+..+.. .....++++|+|
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~-~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPN-NAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTT-TCCEEEEECTTTCSSEEEEEECTTS
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECC-CCeEEeccCCCccCCceEEEECCCC
Confidence 567899999999999988877 37899988 6666655542 358899999999
Q ss_pred CEEEEEcCCCCCCCcCCCccEEEEEEccCCc--eeeeccCCCcccccCCCCCcCCCCcC-eEEecCCCCCEEEEec--CC
Q 005140 266 KYLVTYSSHEPSNPRDANRVVINIFDVRTGK--VMRDFKGSADEFAVGGTGGVAGVSWP-VFRWGGGKDKYFAKLG--KN 340 (712)
Q Consensus 266 ~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~dg~~la~~~--d~ 340 (712)
+.+++...+ +.|++|+. +|. .+..+......- .. ...+..| .++++|.++.++++.+ ++
T Consensus 103 ~l~v~d~~~----------~~v~~~~~-~g~~~~~~~~~~~~~~g---~~--~~~~~~P~~ia~~~~~g~lyv~d~~~~~ 166 (329)
T 3fvz_A 103 NYWVTDVAL----------HQVFKLDP-HSKEGPLLILGRSMQPG---SD--QNHFCQPTDVAVEPSTGAVFVSDGYCNS 166 (329)
T ss_dssp CEEEEETTT----------TEEEEECT-TCSSCCSEEESBTTBCC---CS--TTCCSSEEEEEECTTTCCEEEEECSSCC
T ss_pred CEEEEECCC----------CEEEEEeC-CCCeEEEEEecccCCCC---CC--ccccCCCcEEEEeCCCCeEEEEeCCCCC
Confidence 988888777 89999996 444 455442211000 00 0001111 5888872356666653 78
Q ss_pred eEEEEEcCCceeccccc----------ccccCeeeEEECCC-CCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeee
Q 005140 341 MISVYETESFTLIDKKS----------LKVENVMDFSWSPT-DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFS 409 (712)
Q Consensus 341 ~i~iwd~~~~~~~~~~~----------~~~~~v~~~~~sp~-~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 409 (712)
.|.+|+. ++..+.... .+......++++|+ +.++++ .....+|..|+..+
T Consensus 167 ~I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~-------d~~~~~I~~~~~~~----------- 227 (329)
T 3fvz_A 167 RIVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVA-------DRENGRIQCFKTDT----------- 227 (329)
T ss_dssp EEEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEE-------ETTTTEEEEEETTT-----------
T ss_pred eEEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEE-------ECCCCEEEEEECCC-----------
Confidence 9999994 454443221 12223677788887 444443 22223444433221
Q ss_pred ecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEc----CC
Q 005140 410 VSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG----DS 485 (712)
Q Consensus 410 ~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~----d~ 485 (712)
|+++.. +....+...+.+++++| +..++..+. +.
T Consensus 228 -----------G~~~~~------------------------------~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~ 265 (329)
T 3fvz_A 228 -----------KEFVRE------------------------------IKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQ 265 (329)
T ss_dssp -----------CCEEEE------------------------------ECCTTTTTCEEEEEEET-TEEEEEECCCCTTCS
T ss_pred -----------CcEEEE------------------------------EeccccCCCcceeeecC-CEEEEeCCCEEeccC
Confidence 322211 11123345666777887 322222211 11
Q ss_pred CCCeEEEEEeecccccCceeEEEEeC-----CCceeEEEEccCCCeEEEEeccCCCceEEEEECCc
Q 005140 486 PRPDISFYSMRTAQHAGRVSKLTTLK-----GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE 546 (712)
Q Consensus 486 ~~~~v~i~d~~~~~~~~~~~~~~~~~-----~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~ 546 (712)
....|.+|++.++. .+..+. ......++++|+|..+++... ++.|++|++..
T Consensus 266 ~~~~v~~~~~~~g~------~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~---~~~I~~~~~~~ 322 (329)
T 3fvz_A 266 EPVQGFVMNFSSGE------IIDVFKPVRKHFDMPHDIVASEDGTVYIGDAH---TNTVWKFTLTE 322 (329)
T ss_dssp CCCCEEEEETTTCC------EEEEECCSSSCCSSEEEEEECTTSEEEEEESS---SCCEEEEEEEE
T ss_pred CCcEEEEEEcCCCe------EEEEEcCCCCccCCeeEEEECCCCCEEEEECC---CCEEEEEeCCc
Confidence 12379999987654 445542 124788999999966666555 78999999863
No 307
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.2e-12 Score=109.50 Aligned_cols=77 Identities=23% Similarity=0.368 Sum_probs=67.6
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+++|+++|++||.|.. +.|+.+ ++++|||||+|.+.++|.+|++.|||..++++
T Consensus 21 ~~~~l~V~nLp~------~~t~~~l~~~F~~~G~v~~--~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 89 (109)
T 1x4a_A 21 NDCRIYVGNLPP------DIRTKDIEDVFYKYGAIRD--IDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGY 89 (109)
T ss_dssp CSSEEEEESCCT------TCCHHHHHHHHGGGSCEEE--EEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 467999999997 4458999999999999999 999765 56899999999999999999999999999885
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 90 -~l~V~~a~ 97 (109)
T 1x4a_A 90 -RLRVEFPR 97 (109)
T ss_dssp -ECEEECCC
T ss_pred -EEEEEEcc
Confidence 77777643
No 308
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.41 E-value=1.5e-13 Score=113.46 Aligned_cols=76 Identities=21% Similarity=0.293 Sum_probs=67.5
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
+++|||+|||. ...+++|+++|++||.|.. +.|+.|+ +|+++|||||+|.+.++|.+|++ ||..++++
T Consensus 9 ~~~l~V~nLp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~- 76 (102)
T 2xs2_A 9 PNTVFVGGIDV------RMDETEIRSFFARYGSVKE--VKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGK- 76 (102)
T ss_dssp EEEEEEECCCT------TCCHHHHHHHHGGGSCEEE--EEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTE-
T ss_pred CCEEEEeCCCC------CCCHHHHHHHHHhCCCeEE--EEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCE-
Confidence 46999999997 4458999999999999999 9999999 99999999999999999999999 88888885
Q ss_pred EEEEEeec
Q 005140 139 IFAVNMFD 146 (712)
Q Consensus 139 ~l~v~~~~ 146 (712)
.+.|....
T Consensus 77 ~l~v~~a~ 84 (102)
T 2xs2_A 77 KLKLGPAI 84 (102)
T ss_dssp ECEEEEEE
T ss_pred EEEEEECC
Confidence 66665544
No 309
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.40 E-value=2.9e-13 Score=111.33 Aligned_cols=78 Identities=19% Similarity=0.278 Sum_probs=64.7
Q ss_pred cCCCCEEEECCCCCCCchhhh-hhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCC--C
Q 005140 56 SGFGNIIVVDNLPVVPKEKFE-KLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNG--Y 132 (712)
Q Consensus 56 ~~~~~~~~v~~lp~~~~~~~~-~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~--~ 132 (712)
..-+++|||+|||. + ..+.+|+++|++||.|.+ +.|+. +||||||+|++.++|.+|++.||+ .
T Consensus 22 ~~p~~~l~V~NLp~------~~~te~~L~~lF~~fG~V~~--v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~ 87 (112)
T 1x4f_A 22 QELGRVIHLSNLPH------SGYSDSAVLKLAEPYGKIKN--YILMR------MKSQAFIEMETREDAMAMVDHCLKKAL 87 (112)
T ss_dssp SCCCCEEEEESCCC------SSCCSHHHHTTTTTTSCCSE--EEEET------TTTEEEEECSSHHHHHHHHHHHHHSCC
T ss_pred CCCCCEEEEeCCCC------ccCCHHHHHHHHHhcCCEEE--EEEec------CCCEEEEEECCHHHHHHHHHHhccCCc
Confidence 33478999999997 3 447889999999999999 98873 579999999999999999998864 5
Q ss_pred ccCCceEEEEEeeccc
Q 005140 133 KLDRAHIFAVNMFDDF 148 (712)
Q Consensus 133 ~~~~~~~l~v~~~~~~ 148 (712)
.++++ .+.|......
T Consensus 88 ~l~Gr-~l~V~~a~~~ 102 (112)
T 1x4f_A 88 WFQGR-CVKVDLSEKY 102 (112)
T ss_dssp CSSSS-CCEEEEECSC
T ss_pred eECCE-EEEEEECccc
Confidence 58875 7888775543
No 310
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=6.3e-13 Score=102.74 Aligned_cols=71 Identities=15% Similarity=0.247 Sum_probs=60.5
Q ss_pred EEEECCCCC-CCchhhhhhHHHHHHHhhccC-eeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 61 IIVVDNLPV-VPKEKFEKLEGVIRKIYSQIG-VIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 61 ~~~v~~lp~-~~~~~~~~~~~~l~~~f~~~g-~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.|||+|||. +.+ +.+...|+++|++|| +|.+ | || |||||+|.+.++|.+|++.|||..+.++
T Consensus 11 ~lYV~NL~~~~~~---~~lk~~L~~lF~~yGG~Vl~--V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr- 74 (96)
T 2diu_A 11 LLYVYNLPANKDG---KSVSNRLRRLSDNCGGKVLS--I-------TG---CSAILRFINQDSAERAQKRMENEDVFGN- 74 (96)
T ss_dssp EEEEESCCTTSCH---HHHHHHHHHHHHTTTCCEEE--C-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSS-
T ss_pred EEEEeCCCCcCCH---HHHHHHHHHHHHHcCCeeEE--E-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCc-
Confidence 499999994 554 667888999999995 9988 5 45 9999999999999999999999999986
Q ss_pred EEEEEeecc
Q 005140 139 IFAVNMFDD 147 (712)
Q Consensus 139 ~l~v~~~~~ 147 (712)
.+++.....
T Consensus 75 ~i~v~~A~~ 83 (96)
T 2diu_A 75 RIIVSFTPK 83 (96)
T ss_dssp CCEEESSCC
T ss_pred eEEEEecCC
Confidence 777766544
No 311
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.40 E-value=5e-13 Score=121.65 Aligned_cols=80 Identities=20% Similarity=0.342 Sum_probs=72.2
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
.-+++|||+|||. ...+++|+++|++||.|.. |.|+.|+ +|+++|||||+|.+.++|.+|++.|||..+++
T Consensus 86 ~~~~~l~V~nLp~------~~te~~L~~~F~~~G~I~~--v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~G 156 (177)
T 2f3j_A 86 ETGAKLLVSNLDF------GVSDADIQELFAEFGTLKK--AAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDG 156 (177)
T ss_dssp TTCEEEEEECCCS------CCCHHHHHHHHHHTSCCSE--EEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSS
T ss_pred CCCCEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 3468999999997 4458899999999999999 9999999 99999999999999999999999999999998
Q ss_pred ceEEEEEeec
Q 005140 137 AHIFAVNMFD 146 (712)
Q Consensus 137 ~~~l~v~~~~ 146 (712)
+ .+.|....
T Consensus 157 r-~l~V~~a~ 165 (177)
T 2f3j_A 157 R-PMDIQLVA 165 (177)
T ss_dssp S-BCEEEEES
T ss_pred E-EEEEEEec
Confidence 5 77777654
No 312
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.40 E-value=8.3e-13 Score=111.64 Aligned_cols=79 Identities=16% Similarity=0.368 Sum_probs=69.1
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
..+++|||+|||. ...+.+|+++|++||.|.. +.++.| +.++|||||+|.+.++|.+|++.|||..+++
T Consensus 6 ~~~~~l~V~nlp~------~~t~~~l~~~F~~~G~v~~--v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 74 (115)
T 3lqv_A 6 EVNRILYIRNLPY------KITAEEMYDIFGKYGPIRQ--IRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSN 74 (115)
T ss_dssp TCCSEEEEESCCT------TCCHHHHHHHHHTTSCEEE--EEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3467999999997 4458899999999999999 999976 4669999999999999999999999999988
Q ss_pred ceEEEEEeecc
Q 005140 137 AHIFAVNMFDD 147 (712)
Q Consensus 137 ~~~l~v~~~~~ 147 (712)
+ .+.|.....
T Consensus 75 ~-~l~v~~a~~ 84 (115)
T 3lqv_A 75 R-YLVVLYYNA 84 (115)
T ss_dssp C-BCEEEECCH
T ss_pred e-EEEEEEecC
Confidence 5 788876554
No 313
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.40 E-value=5.7e-13 Score=109.06 Aligned_cols=73 Identities=12% Similarity=0.055 Sum_probs=62.3
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCC--ccCC
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGY--KLDR 136 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~--~~~~ 136 (712)
+++|||+|||. +..+.+|+++|++||.|.+ +.|+.+ ||||||+|++.++|.+|++.||+. .+.+
T Consensus 15 ~~~l~V~nLp~------~~te~~L~~~F~~fG~V~~--v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G 80 (104)
T 1wex_A 15 SPVVHVRGLCE------SVVEADLVEALEKFGTICY--VMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAG 80 (104)
T ss_dssp CSEEEEESCCS------SCCHHHHHHHHTTTSCEEE--EEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSS
T ss_pred CCEEEEeCCCC------CCCHHHHHHHHHhCCCEEE--EEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 57999999997 5558999999999999999 998864 799999999999999999998765 4777
Q ss_pred ceEEEEEeec
Q 005140 137 AHIFAVNMFD 146 (712)
Q Consensus 137 ~~~l~v~~~~ 146 (712)
+ .+.|....
T Consensus 81 r-~l~V~~a~ 89 (104)
T 1wex_A 81 Q-QAFFNYST 89 (104)
T ss_dssp S-BCEEEECS
T ss_pred E-EEEEEEcc
Confidence 5 77776643
No 314
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=5.3e-13 Score=109.67 Aligned_cols=75 Identities=21% Similarity=0.337 Sum_probs=62.2
Q ss_pred CCCEEEE--CCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc-
Q 005140 58 FGNIIVV--DNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL- 134 (712)
Q Consensus 58 ~~~~~~v--~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~- 134 (712)
-.++||| +|||. +..++.|+++|++||.|.. +.|+.+ ||||||+|.+.++|++|++.|||..+
T Consensus 24 pt~~L~V~Ng~L~~------~~te~~L~~~F~~fG~v~~--v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~ 89 (114)
T 2cq2_A 24 ATQSLVVANGGLGN------GVSRNQLLPVLEKCGLVDA--LLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVV 89 (114)
T ss_dssp CCSEEEEETCTGGG------TCCHHHHHHHHHHHSCEEE--EECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCEEEEECCCCCC------CCCHHHHHHHHHhcCCeEE--EEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEc
Confidence 3578999 88997 4448999999999999999 988753 79999999999999999999999877
Q ss_pred ---CCceEEEEEeec
Q 005140 135 ---DRAHIFAVNMFD 146 (712)
Q Consensus 135 ---~~~~~l~v~~~~ 146 (712)
++..++.|....
T Consensus 90 ~~lg~g~~l~v~~a~ 104 (114)
T 2cq2_A 90 DDLGQKITLYLNFVE 104 (114)
T ss_dssp CTTSCEEECEEEEES
T ss_pred cccCCCcEEEEEecc
Confidence 233466666543
No 315
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=1.1e-12 Score=108.01 Aligned_cols=77 Identities=21% Similarity=0.382 Sum_probs=67.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+++|+++|++||.| .++.+ .+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 14 ~~~~l~V~nLp~------~~t~~~l~~~F~~~g~v-----~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 81 (101)
T 2fc9_A 14 ESKTLVLSNLSY------SATEETLQEVFEKATFI-----KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGR 81 (101)
T ss_dssp CCSEEEEESCCT------TCCHHHHHHHCSSCSEE-----ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhCCEE-----EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCe
Confidence 467999999997 45589999999999985 57777 4899999999999999999999999999999984
Q ss_pred eEEEEEeecc
Q 005140 138 HIFAVNMFDD 147 (712)
Q Consensus 138 ~~l~v~~~~~ 147 (712)
.+.|.....
T Consensus 82 -~l~v~~a~~ 90 (101)
T 2fc9_A 82 -AIRLELQGP 90 (101)
T ss_dssp -EEEEEECSS
T ss_pred -EEEEEEcCC
Confidence 888877543
No 316
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=7.9e-13 Score=109.09 Aligned_cols=78 Identities=19% Similarity=0.314 Sum_probs=68.0
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
.-.++|||+|||. ...+++|+++|++|+ . +.++.|+.+++++|||||+|.+.++|.+|++.|||..+++
T Consensus 13 ~~~~~l~V~nLp~------~~t~~~l~~~F~~~~---~--~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 81 (102)
T 2fc8_A 13 QPSKTLFVKGLSE------DTTEETLKESFDGSV---R--ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG 81 (102)
T ss_dssp CCCSSEEEECCCT------TCCHHHHHHTSTTCS---E--EEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCC------ccCHHHHHHHhcCCe---E--EEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 3467999999997 445889999999885 4 7888998899999999999999999999999999999998
Q ss_pred ceEEEEEeec
Q 005140 137 AHIFAVNMFD 146 (712)
Q Consensus 137 ~~~l~v~~~~ 146 (712)
+ .+.|....
T Consensus 82 ~-~l~V~~a~ 90 (102)
T 2fc8_A 82 N-KVTLDWAK 90 (102)
T ss_dssp E-ECEEEECC
T ss_pred e-EEEEEEec
Confidence 5 77777644
No 317
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=4.4e-13 Score=113.39 Aligned_cols=80 Identities=20% Similarity=0.216 Sum_probs=67.8
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+++|||+|||. ...+++|+++|++||.|.. +.+..+..+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 24 ~~~~l~V~nLp~------~~t~~~l~~~f~~~G~v~~--~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 95 (115)
T 2cpx_A 24 PNKVLYLKNLSP------RVTERDLVSLFARFQEKKG--PPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGK 95 (115)
T ss_dssp CCSEEEEECCCT------TCCHHHHHHHTHHHHHSSS--SCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSC
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHHhCCccc--eEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 468999999997 4458999999999999965 44444444899999999999999999999999999999885
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 96 -~l~v~~a~ 103 (115)
T 2cpx_A 96 -ILVIEFGK 103 (115)
T ss_dssp -BCEEEECC
T ss_pred -EEEEEEcc
Confidence 77777654
No 318
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=5.5e-13 Score=111.39 Aligned_cols=73 Identities=21% Similarity=0.296 Sum_probs=64.3
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
+++|||+|||. +..+.+|+++|++||.|.. |.|+. ++|||||+|.+.++|.+|++.|||..++++
T Consensus 10 ~~~l~V~nLp~------~~te~~L~~~F~~~G~i~~--v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~- 74 (111)
T 1whx_A 10 KTVILAKNLPA------GTLAAEIQETFSRFGSLGR--VLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHV- 74 (111)
T ss_dssp EEEEEEESCCT------TCCHHHHHHHHHTTSCEEE--EECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSS-
T ss_pred CCEEEEeCCCC------CCCHHHHHHHHHhcCCEEE--EEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCe-
Confidence 46999999997 5559999999999999999 98874 679999999999999999999999999986
Q ss_pred EEEEEeec
Q 005140 139 IFAVNMFD 146 (712)
Q Consensus 139 ~l~v~~~~ 146 (712)
.+.|....
T Consensus 75 ~l~V~~a~ 82 (111)
T 1whx_A 75 PLYLEWAP 82 (111)
T ss_dssp BCEEEEEE
T ss_pred EEEEEECC
Confidence 66766543
No 319
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.38 E-value=4e-13 Score=113.56 Aligned_cols=78 Identities=24% Similarity=0.362 Sum_probs=65.4
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+++|+++|++| .|..+.|.|++|+. |++||||||+|.++++|.+|++. ++..|+++
T Consensus 41 ~~~~lfVgnLp~------~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR 111 (126)
T 2hgm_A 41 NDGFVRLRGLPF------GCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHR 111 (126)
T ss_dssp SCCEEEEECCCT------TCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTB
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCE
Confidence 467999999998 55599999999999 56622299999995 99999999999999999999985 77888886
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 112 -~I~V~~a 118 (126)
T 2hgm_A 112 -YIEVFKS 118 (126)
T ss_dssp -CCCCEEE
T ss_pred -EEEEEEC
Confidence 5665543
No 320
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=1.2e-12 Score=108.97 Aligned_cols=74 Identities=19% Similarity=0.155 Sum_probs=65.6
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC-
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR- 136 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~- 136 (712)
-.++|||+|||. +..+++|+++|++||.|.. +.|+.| |||||+|.+.++|++|++.|||..+++
T Consensus 14 ~~~~l~V~nLp~------~~t~~~l~~~F~~~G~i~~--~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 78 (108)
T 1x4c_A 14 SENRVVVSGLPP------SGSWQDLKDHMREAGDVCY--ADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSH 78 (108)
T ss_dssp CCCEEEEESCCS------SCCHHHHHHHHGGGSCEEE--EEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECT
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCEeE--EEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCC
Confidence 467999999997 4558999999999999999 999987 899999999999999999999999987
Q ss_pred ----ceEEEEEeecc
Q 005140 137 ----AHIFAVNMFDD 147 (712)
Q Consensus 137 ----~~~l~v~~~~~ 147 (712)
+ .+.|.....
T Consensus 79 ~~~~~-~i~V~~a~~ 92 (108)
T 1x4c_A 79 EGETA-YIRVKVDGP 92 (108)
T ss_dssp TSCEE-EEEEEESSC
T ss_pred cCcce-EEEEEeCCC
Confidence 4 777776543
No 321
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.38 E-value=1.4e-13 Score=118.86 Aligned_cols=75 Identities=17% Similarity=0.306 Sum_probs=66.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+++|+++|++|| |++ |.|++|+. |++||||||+|.+.++|++|+ .+|+..++++
T Consensus 45 ~~~~lfV~nLp~------~~te~dL~~~F~~~G-i~~--v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR 113 (139)
T 2hgn_A 45 TGHCVHMRGLPY------KATENDIYNFFSPLN-PVR--VHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHR 113 (139)
T ss_dssp CCCCEECCSCCT------TCCHHHHHHHHCSCC-CSE--EECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSC
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcC-CeE--EEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCE
Confidence 457999999998 555999999999999 678 99999984 999999999999999999999 7899999886
Q ss_pred eEEEEEe
Q 005140 138 HIFAVNM 144 (712)
Q Consensus 138 ~~l~v~~ 144 (712)
.+.|..
T Consensus 114 -~i~V~~ 119 (139)
T 2hgn_A 114 -YIELFL 119 (139)
T ss_dssp -CCCCEE
T ss_pred -EEEEEE
Confidence 555544
No 322
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.37 E-value=1.7e-13 Score=112.78 Aligned_cols=78 Identities=15% Similarity=0.171 Sum_probs=67.7
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. .++.|+.+|+++|||||+|.+.++|.+|++ |||..++++
T Consensus 16 ~~~~l~V~nLp~------~~t~~~l~~~F~~~G~v~~---~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~ 85 (101)
T 1fj7_A 16 TPFNLFIGNLNP------NKSVAELKVAISELFAKND---LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGN 85 (101)
T ss_dssp CSEEEEEECCCT------TSCHHHHHHHHHHHHHHHT---CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTB
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHHhCCcce---EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCc
Confidence 357999999997 4558999999999999876 467787799999999999999999999999 999999985
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 86 -~l~V~~a~ 93 (101)
T 1fj7_A 86 -EIKLEKPK 93 (101)
T ss_dssp -CCEEECCS
T ss_pred -EEEEEEcC
Confidence 77776643
No 323
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.37 E-value=1.2e-12 Score=124.32 Aligned_cols=77 Identities=22% Similarity=0.308 Sum_probs=70.0
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.++|||+|||. +..+++|+++|++||.|.+ |.|+.|+.||+++|||||+|.+.++|.+|++.+||..+.++
T Consensus 15 ~~tlfVgnLp~------~~te~~L~~~F~~~G~I~~--v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~- 85 (213)
T 4f02_A 15 MASLYVGDLHP------DVTEAMLYEKFSPAGPILS--IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK- 85 (213)
T ss_dssp CCEEEEESCCT------TCCHHHHHHHHGGGSCEEE--EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE-
T ss_pred CcEEEEeCCCC------CCCHHHHHHHHHhhCCEEE--EEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCc-
Confidence 47999999997 5559999999999999999 99999999999999999999999999999999999999885
Q ss_pred EEEEEe
Q 005140 139 IFAVNM 144 (712)
Q Consensus 139 ~l~v~~ 144 (712)
.+.+..
T Consensus 86 ~i~~~~ 91 (213)
T 4f02_A 86 PVRIMW 91 (213)
T ss_dssp ECEEEE
T ss_pred cccccc
Confidence 555544
No 324
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.37 E-value=1.1e-12 Score=107.86 Aligned_cols=74 Identities=22% Similarity=0.432 Sum_probs=66.2
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceE
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~ 139 (712)
++|||+|||. +..+++|+++|++||.|.. +.++.| ++|||||+|.+.++|.+|++.|||..++++ .
T Consensus 1 ~~l~V~nLp~------~~t~~~l~~~F~~~G~i~~--v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~ 66 (101)
T 2hvz_A 1 MKVYVGNLGT------GAGKGELERAFSYYGPLRT--VWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGS-R 66 (101)
T ss_dssp CEEEEECCCS------SCSHHHHHHHHHHHCCCSE--EEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSC-C
T ss_pred CEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCc-E
Confidence 5899999997 4458999999999999999 999987 889999999999999999999999999986 6
Q ss_pred EEEEeecc
Q 005140 140 FAVNMFDD 147 (712)
Q Consensus 140 l~v~~~~~ 147 (712)
+.|.....
T Consensus 67 l~V~~a~~ 74 (101)
T 2hvz_A 67 VRVELSTG 74 (101)
T ss_dssp CEEEESSS
T ss_pred EEEEEccC
Confidence 77776554
No 325
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.8e-12 Score=108.19 Aligned_cols=77 Identities=18% Similarity=0.298 Sum_probs=67.4
Q ss_pred cCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 005140 56 SGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135 (712)
Q Consensus 56 ~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 135 (712)
..-.++|||+|||. ...+++|+++|++||.|.. +.|+.+ +|||||+|.+.++|.+|++.|||..++
T Consensus 22 ~~~~~~l~V~nl~~------~~t~~~l~~~F~~~G~i~~--v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~ 87 (109)
T 1x4g_A 22 SPKNCTVYCGGIAS------GLTDQLMRQTFSPFGQIME--IRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIE 87 (109)
T ss_dssp CSSCCEEEEECCSS------CCCHHHHHHHHHHHSCEEE--EEEETT------TTEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCcEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 33578999999997 4448999999999999999 999987 799999999999999999999999999
Q ss_pred CceEEEEEeecc
Q 005140 136 RAHIFAVNMFDD 147 (712)
Q Consensus 136 ~~~~l~v~~~~~ 147 (712)
++ .+.|.....
T Consensus 88 g~-~l~v~~a~~ 98 (109)
T 1x4g_A 88 GH-VVKCYWGKE 98 (109)
T ss_dssp TE-ECEEECCCC
T ss_pred Cc-EEEEEecCC
Confidence 85 788876543
No 326
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.36 E-value=6.9e-13 Score=108.34 Aligned_cols=77 Identities=17% Similarity=0.279 Sum_probs=65.7
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHH----HHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIR----KIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYK 133 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~----~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~ 133 (712)
-+++|||+|||. +..+++|+ ++|++||.|.. +.++. +|+++|||||+|.+.++|.+|++.|||..
T Consensus 7 ~~~~l~V~nLp~------~~~~~~l~~~l~~~f~~~G~i~~--v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 75 (97)
T 1nu4_A 7 PNHTIYINNLNE------KIKKDELKKSLHAIFSRFGQILD--ILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFP 75 (97)
T ss_dssp CCSEEEEESCCT------TSCHHHHHHHHHHHHGGGSCEEE--EECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHHHHHhCCCEEE--EEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCE
Confidence 467999999996 33355566 99999999999 98883 68899999999999999999999999999
Q ss_pred cCCceEEEEEeec
Q 005140 134 LDRAHIFAVNMFD 146 (712)
Q Consensus 134 ~~~~~~l~v~~~~ 146 (712)
++++ .+.|....
T Consensus 76 ~~g~-~l~v~~a~ 87 (97)
T 1nu4_A 76 FYDK-PMRIQYAK 87 (97)
T ss_dssp ETTE-ECEEEECS
T ss_pred ECCc-EEEEEEcc
Confidence 9884 77777643
No 327
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.35 E-value=1.8e-12 Score=105.73 Aligned_cols=74 Identities=16% Similarity=0.271 Sum_probs=63.9
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC-c
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR-A 137 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~-~ 137 (712)
.++|||+|||. +..+++|+++|++||.|.. +.++.+ +|||||+|.+.++|.+|++.|||..+++ .
T Consensus 17 ~~~l~V~nlp~------~~t~~~l~~~F~~~G~v~~--v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g 82 (97)
T 1why_A 17 TTRLWVGGLGP------NTSLAALAREFDRFGSIRT--IDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPD 82 (97)
T ss_dssp CSCEEEECCCS------SCCHHHHHHHHHTTSCEEE--EEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSS
T ss_pred CCEEEEeCCCC------CCCHHHHHHHHHhcCCeeE--EEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCC
Confidence 57999999997 4448999999999999999 988754 7899999999999999999999999982 2
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
+.+.|....
T Consensus 83 ~~l~V~~a~ 91 (97)
T 1why_A 83 RRLRVDFAK 91 (97)
T ss_dssp CBCEEEECC
T ss_pred cEEEEEECC
Confidence 477777643
No 328
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=2.6e-12 Score=103.10 Aligned_cols=71 Identities=27% Similarity=0.310 Sum_probs=63.2
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.++|||+|||. +..+++|+++|++||.|.. +.++ ||||||+|.+.++|.+|++.|||..++++
T Consensus 8 ~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~- 70 (90)
T 2dnq_A 8 MVKLFIGNLPR------EATEQEIRSLFEQYGKVLE--CDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGV- 70 (90)
T ss_dssp CEEEEEESCCS------SCCHHHHHHHHHTSSCEEE--EEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSC-
T ss_pred CeEEEEeCCCC------CCCHHHHHHHHHhCCCEEE--EEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCc-
Confidence 46999999997 4458899999999999999 9887 68999999999999999999999999885
Q ss_pred EEEEEeec
Q 005140 139 IFAVNMFD 146 (712)
Q Consensus 139 ~l~v~~~~ 146 (712)
.+.|....
T Consensus 71 ~l~v~~a~ 78 (90)
T 2dnq_A 71 NINVEASK 78 (90)
T ss_dssp BCEEECSS
T ss_pred EEEEEECC
Confidence 77777644
No 329
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.35 E-value=1.8e-12 Score=108.36 Aligned_cols=86 Identities=16% Similarity=0.286 Sum_probs=72.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCC----CCCcccEEEEEeCCHHHHHHHHHHhCCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPE----TQKSLGYCFIEYNTPQEAELAKEKTNGYK 133 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~----~~~~~g~~fv~~~~~~~a~~a~~~~~~~~ 133 (712)
.+++|++.|+-.. ++=.+-++++|++.|++||.|.+ +.||.|+. +++++||+||+|.++++|.+|++.|||..
T Consensus 19 ps~vl~L~Nm~~~-~el~ddleedl~eef~k~G~V~~--v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~ 95 (118)
T 3ue2_A 19 ESTVMVLRNMVDP-KDIDDDLEGEVTEECGKFGAVNR--VIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW 95 (118)
T ss_dssp SCCEEEEESCSCG-GGCCTTHHHHHHHHHTTTSCEEE--EEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHHHHHhccCCEeE--EEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCE
Confidence 4789999999532 11113478999999999999999 99999864 46789999999999999999999999999
Q ss_pred cCCceEEEEEeecc
Q 005140 134 LDRAHIFAVNMFDD 147 (712)
Q Consensus 134 ~~~~~~l~v~~~~~ 147 (712)
++++ .+.|..+..
T Consensus 96 f~GR-~i~v~~~~~ 108 (118)
T 3ue2_A 96 FAGR-KVVAEVYDQ 108 (118)
T ss_dssp ETTE-ECEEEEECH
T ss_pred ECCc-EEEEEEcCh
Confidence 9996 888877654
No 330
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.35 E-value=2.2e-10 Score=113.39 Aligned_cols=218 Identities=11% Similarity=0.058 Sum_probs=152.3
Q ss_pred CCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCc-ccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCe
Q 005140 263 PGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSAD-EFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNM 341 (712)
Q Consensus 263 pdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~ 341 (712)
..+++|++++.+ +.|.+||..+|+.+..+..+.. ... .+.++| +|++++ +.++.
T Consensus 3 ~~~~~lv~~~~~----------~~v~~~d~~tG~~~w~~~~~~~~~~~-------------~~~~~p-dG~ilv-s~~~~ 57 (276)
T 3no2_A 3 SPQHLLVGGSGW----------NKIAIINKDTKEIVWEYPLEKGWECN-------------SVAATK-AGEILF-SYSKG 57 (276)
T ss_dssp CCCEEEEECTTC----------SEEEEEETTTTEEEEEEECCTTCCCC-------------EEEECT-TSCEEE-ECBSE
T ss_pred CCCcEEEeeCCC----------CEEEEEECCCCeEEEEeCCCccCCCc-------------CeEECC-CCCEEE-eCCCC
Confidence 346789999988 8999999889999999987642 211 688999 999988 45788
Q ss_pred EEEEEcCCceecccccccc-cCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcC
Q 005140 342 ISVYETESFTLIDKKSLKV-ENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSS 420 (712)
Q Consensus 342 i~iwd~~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 420 (712)
|..||. +++.+....... ..+.++.+.|+|++++. .+.+ ..+++. ++++
T Consensus 58 V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~-----~~~~-~~~v~~-----------------------vd~~ 107 (276)
T 3no2_A 58 AKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVA-----WCGH-PSTILE-----------------------VNMK 107 (276)
T ss_dssp EEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEE-----EEST-TEEEEE-----------------------ECTT
T ss_pred EEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEE-----ecCC-CCEEEE-----------------------EeCC
Confidence 999998 788776655432 34778899999998886 2221 334432 3555
Q ss_pred CCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccc
Q 005140 421 GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQH 500 (712)
Q Consensus 421 g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~ 500 (712)
|+.+...... . . ..++......++..++|+++++...++ .|..||.+ ++
T Consensus 108 Gk~l~~~~~~------------------~-~-------~~~~~~~~~~v~~~~~G~~lv~~~~~~---~v~~~d~~-G~- 156 (276)
T 3no2_A 108 GEVLSKTEFE------------------T-G-------IERPHAQFRQINKNKKGNYLVPLFATS---EVREIAPN-GQ- 156 (276)
T ss_dssp SCEEEEEEEC------------------C-S-------CSSGGGSCSCCEECTTSCEEEEETTTT---EEEEECTT-SC-
T ss_pred CCEEEEEecc------------------C-C-------CCcccccccCceECCCCCEEEEecCCC---EEEEECCC-CC-
Confidence 6543221110 0 0 001112344557788999998887777 89999985 44
Q ss_pred cCceeEEEEeCC-CceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccc--------cceeeEEECCCCCEEE
Q 005140 501 AGRVSKLTTLKG-KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEH--------FMATDVEWDPTGRYVA 571 (712)
Q Consensus 501 ~~~~~~~~~~~~-~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~--------~~v~~~~~spdg~~l~ 571 (712)
.+.++.. ....++...++|+.++++.. ++.|..+|..+++.+.+... ..++.++..++|..++
T Consensus 157 -----~~w~~~~~~~~~~~~~~~~g~~~v~~~~---~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v 228 (276)
T 3no2_A 157 -----LLNSVKLSGTPFSSAFLDNGDCLVACGD---AHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYI 228 (276)
T ss_dssp -----EEEEEECSSCCCEEEECTTSCEEEECBT---TSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEE
T ss_pred -----EEEEEECCCCccceeEcCCCCEEEEeCC---CCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEE
Confidence 4444442 34567788999999988876 77899999998888765321 2367889999999888
Q ss_pred EEE
Q 005140 572 TAV 574 (712)
Q Consensus 572 t~s 574 (712)
+..
T Consensus 229 ~~~ 231 (276)
T 3no2_A 229 CNW 231 (276)
T ss_dssp EEE
T ss_pred Eec
Confidence 875
No 331
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.03 E-value=8.5e-14 Score=117.88 Aligned_cols=82 Identities=23% Similarity=0.292 Sum_probs=71.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeece------EEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDG------LWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNG 131 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~------~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~ 131 (712)
-.++|||+|||. +..+++|+++|++||.|.... +.++.|+.+|+++|||||+|.+.++|.+|++.|||
T Consensus 6 ~~~~l~V~nLp~------~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 79 (116)
T 2lcw_A 6 DNNTIFVQGLGE------NVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 79 (116)
Confidence 357999999997 555889999999999986522 67999988999999999999999999999999999
Q ss_pred CccCCceEEEEEeec
Q 005140 132 YKLDRAHIFAVNMFD 146 (712)
Q Consensus 132 ~~~~~~~~l~v~~~~ 146 (712)
..++++ .+.|....
T Consensus 80 ~~~~g~-~l~V~~a~ 93 (116)
T 2lcw_A 80 KEFSGN-PIKVSFAT 93 (116)
Confidence 999885 77776643
No 332
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.34 E-value=4.7e-12 Score=102.86 Aligned_cols=73 Identities=19% Similarity=0.267 Sum_probs=63.1
Q ss_pred cCCCCEEEECCCCC-CCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Q 005140 56 SGFGNIIVVDNLPV-VPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134 (712)
Q Consensus 56 ~~~~~~~~v~~lp~-~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~ 134 (712)
..-+++|||+|||. -.. +++|+++|++||.|.. +.++ +|||||+|.+.++|.+|++.|||..+
T Consensus 19 ~~~~~~l~V~nLp~~~~t------~~~L~~~F~~~G~v~~--v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVS------KEDLFRIFSPYGHIMQ--INIK--------NAFGFIQFDNPQSVRDAIEXESQEMN 82 (97)
T ss_dssp CCTTCEEEEESCCSSCCC------HHHHHHHHGGGSCEEE--EEEC--------SSEEEEEESSHHHHHHHHHHHTTSEE
T ss_pred CCCCCEEEEeCCCcccCC------HHHHHHHHHhcCCEEE--EEEe--------CCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 44578999999994 333 8889999999999999 8884 79999999999999999999999999
Q ss_pred CCceEEEEEee
Q 005140 135 DRAHIFAVNMF 145 (712)
Q Consensus 135 ~~~~~l~v~~~ 145 (712)
+++ .+.|...
T Consensus 83 ~g~-~l~V~~a 92 (97)
T 2xnq_A 83 FGK-KLILEVS 92 (97)
T ss_dssp TTE-ECEEEEC
T ss_pred CCE-EEEEEec
Confidence 885 7777654
No 333
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.34 E-value=1.3e-12 Score=106.36 Aligned_cols=75 Identities=19% Similarity=0.332 Sum_probs=64.7
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. + ..+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 15 ~~~~l~V~nL~~------~~t~~~l~~~F~~~g~v~~--~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 81 (96)
T 1fjc_A 15 AARTLLAKNLSF------NITEDELKEVFEDALEIRL--V-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 81 (96)
T ss_dssp GGGEEEEESCCS------SCCHHHHHHHHCSEEEECC--E-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHhhCCcEEE--e-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 357999999997 4448899999999999866 5 34799999999999999999999999999999985
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 82 -~l~v~~a~ 89 (96)
T 1fjc_A 82 -SVSLYYTG 89 (96)
T ss_dssp -EEEEEECS
T ss_pred -EEEEEEcC
Confidence 78877643
No 334
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.34 E-value=1.9e-12 Score=105.97 Aligned_cols=75 Identities=27% Similarity=0.382 Sum_probs=65.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.++.+ ||||||+|.+.++|.+|++.|||..++++
T Consensus 14 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~ 79 (99)
T 2cpj_A 14 QRSRLFVGNLPP------DITEEEMRKLFEKYGKAGE--VFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGK 79 (99)
T ss_dssp CTTEEEEESCCT------TCCHHHHHHHTSTTCCCSE--EEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTB
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHhhcCCeEE--EEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 457999999997 4448899999999999999 999854 79999999999999999999999999985
Q ss_pred eEEEEEeecc
Q 005140 138 HIFAVNMFDD 147 (712)
Q Consensus 138 ~~l~v~~~~~ 147 (712)
.+.|.....
T Consensus 80 -~l~v~~a~~ 88 (99)
T 2cpj_A 80 -QLRVRFACH 88 (99)
T ss_dssp -CCEEEESSC
T ss_pred -eEEEEEcCC
Confidence 788776543
No 335
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=2.4e-12 Score=104.90 Aligned_cols=78 Identities=18% Similarity=0.284 Sum_probs=64.9
Q ss_pred ccCCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Q 005140 55 ESGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134 (712)
Q Consensus 55 ~~~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~ 134 (712)
.....++|||+|||. +..+++|+++|++||.|. +.++. ++++|||||+|.+.++|.+|++.|||..+
T Consensus 15 ~~~~~~~l~V~nL~~------~~t~~~l~~~F~~~G~v~---~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 81 (97)
T 2e5j_A 15 GAPLAADVYVGNLPR------DARVSDLKRALRELGSVP---LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRL 81 (97)
T ss_dssp SSCCCCEEEEECCCT------TCCHHHHHHHHHHTTCCC---SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCS
T ss_pred CCCCCCEEEEeCCCC------cCcHHHHHHHHHhcCCEE---EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEE
Confidence 344678999999997 445899999999999984 34444 47899999999999999999999999999
Q ss_pred CCceEEEEEeec
Q 005140 135 DRAHIFAVNMFD 146 (712)
Q Consensus 135 ~~~~~l~v~~~~ 146 (712)
+++ .+.|....
T Consensus 82 ~g~-~l~V~~a~ 92 (97)
T 2e5j_A 82 GTD-TLRVALAR 92 (97)
T ss_dssp SSS-CCEEEECC
T ss_pred CCc-EEEEEEcC
Confidence 986 77777643
No 336
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.34 E-value=2.6e-12 Score=106.58 Aligned_cols=71 Identities=21% Similarity=0.389 Sum_probs=63.2
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.++ +|||||+|.+.++|.+|++.|||..++++
T Consensus 30 ~~~~l~V~nLp~------~~t~~~L~~~F~~~G~i~~--v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (108)
T 2jvo_A 30 SNTRLFVRPFPL------DVQESELNEIFGPFGPMKE--VKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQ 93 (108)
T ss_dssp SCSEEEECSSCT------TCCHHHHHHHHTTTSCCCE--EEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEECCCC------CCCHHHHHHHHHhcCCEEE--EEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 457999999997 4448899999999999999 8887 79999999999999999999999999885
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 94 -~l~V~~a 100 (108)
T 2jvo_A 94 -PLEVVYS 100 (108)
T ss_dssp -ECEEESC
T ss_pred -EEEEEEe
Confidence 7777654
No 337
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.34 E-value=2.2e-10 Score=113.28 Aligned_cols=238 Identities=6% Similarity=-0.078 Sum_probs=143.9
Q ss_pred CeeEEEecCCCCEEE-EEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCE
Q 005140 255 QVKLIDFSPGEKYLV-TYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 333 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~-t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ 333 (712)
...+++++|+|+.++ +...+ +.|.+|+..++........+.... . .+++++ +|++
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~----------~~i~~~~~~~~~~~~~~~~~~~~p--------~-----~i~~~~-~g~l 80 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMY----------GRVVKLATGSTGTTVLPFNGLYQP--------Q-----GLAVDG-AGTV 80 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSS----------CEEEEECC-----EECCCCSCCSC--------C-----CEEECT-TCCE
T ss_pred CccceEECCCCCEEEEccCCC----------CcEEEecCCCcccceEeeCCcCCc--------c-----eeEECC-CCCE
Confidence 678999999999666 43555 789999875544322111111111 1 589999 9987
Q ss_pred EEEecCCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecce
Q 005140 334 FAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDC 413 (712)
Q Consensus 334 la~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 413 (712)
+++..++.|.+|+..+.............+.+++++|+|+.+++ ......|+.++..+....
T Consensus 81 ~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~-------~~~~~~i~~~~~~~~~~~----------- 142 (270)
T 1rwi_B 81 YVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVA-------DRGNNRVVKLAAGSKTQT----------- 142 (270)
T ss_dssp EEEETTTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEE-------EGGGTEEEEECTTCCSCE-----------
T ss_pred EEEcCCCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEE-------ECCCCEEEEEECCCceeE-----------
Confidence 66665889999998754332111112245788888888875554 111223433321110000
Q ss_pred eEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEE
Q 005140 414 KMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFY 493 (712)
Q Consensus 414 ~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~ 493 (712)
.....+...+.+++++|+|+.+++...++ .|.+|
T Consensus 143 -------------------------------------------~~~~~~~~~p~~i~~~~~g~l~v~~~~~~---~i~~~ 176 (270)
T 1rwi_B 143 -------------------------------------------VLPFTGLNDPDGVAVDNSGNVYVTDTDNN---RVVKL 176 (270)
T ss_dssp -------------------------------------------ECCCCSCCSCCCEEECTTCCEEEEEGGGT---EEEEE
T ss_pred -------------------------------------------eeccccCCCceeEEEeCCCCEEEEECCCC---EEEEE
Confidence 00001123456788999998655554455 79999
Q ss_pred EeecccccCceeEEEEeCC-CceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEE
Q 005140 494 SMRTAQHAGRVSKLTTLKG-KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYV 570 (712)
Q Consensus 494 d~~~~~~~~~~~~~~~~~~-~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l 570 (712)
+..+... ....... ..+..++++|+|..+++... ++.|.+|+..+...... .+...+.+++++|+|+.+
T Consensus 177 ~~~~~~~-----~~~~~~~~~~p~~i~~d~~g~l~v~~~~---~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~ 248 (270)
T 1rwi_B 177 EAESNNQ-----VVLPFTDITAPWGIAVDEAGTVYVTEHN---TNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVY 248 (270)
T ss_dssp CTTTCCE-----EECCCSSCCSEEEEEECTTCCEEEEETT---TSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEE
T ss_pred ecCCCce-----EeecccCCCCceEEEECCCCCEEEEECC---CCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEE
Confidence 8754321 1111112 35788999999976666554 78999999886544332 222568899999999877
Q ss_pred EEEEccceeccccEEEEEecCce
Q 005140 571 ATAVTSVHEMENGFNIWSFNGKL 593 (712)
Q Consensus 571 ~t~s~~~~~~d~~v~iw~~~g~~ 593 (712)
++... ++.|+++++....
T Consensus 249 v~~~~-----~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 249 VADRG-----NDRVVKLTSLEHH 266 (270)
T ss_dssp EEEGG-----GTEEEEECCCGGG
T ss_pred EEECC-----CCEEEEEcCCCcc
Confidence 77666 8999999887543
No 338
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.34 E-value=5e-09 Score=104.98 Aligned_cols=275 Identities=9% Similarity=-0.009 Sum_probs=166.1
Q ss_pred CCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeee--cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEE
Q 005140 211 RSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRY--AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVI 287 (712)
Q Consensus 211 ~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~--~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I 287 (712)
.+...+.+++++|+|+++++...++ +.+|+.. ........ ....+.+++++++|..+++...+ +.|
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~----------~~i 80 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAA----------NKI 80 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTT----------TEE
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCC----------CeE
Confidence 3445678999999999887766444 8899887 32222222 23359999999999988887766 789
Q ss_pred EEEEccCCceeeeccCC--CcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccc-cccccCe
Q 005140 288 NIFDVRTGKVMRDFKGS--ADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKK-SLKVENV 363 (712)
Q Consensus 288 ~iwd~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~-~~~~~~v 363 (712)
..|+.. ++. ..+..+ .... . .+.+.+ +|.++++.. ++.|.+|+. ++...... ......+
T Consensus 81 ~~~~~~-g~~-~~~~~~~~~~~~--------~-----~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~ 143 (299)
T 2z2n_A 81 GRITKK-GII-KEYTLPNPDSAP--------Y-----GITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYP 143 (299)
T ss_dssp EEECTT-SCE-EEEECSSTTCCE--------E-----EEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred EEECCC-CcE-EEEeCCCcCCCc--------e-----eeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCC
Confidence 999974 443 333221 1111 1 588899 998887766 789999998 44432111 1123458
Q ss_pred eeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceee-eeeeeecceeEEECcCCCEEEEEEcccccccccccccE
Q 005140 364 MDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ-KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGF 442 (712)
Q Consensus 364 ~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~ 442 (712)
..++++|+|..++. ......|+.++. +.+.... ..........+.++++|...++....+
T Consensus 144 ~~i~~~~~g~l~v~-------~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~----------- 204 (299)
T 2z2n_A 144 SFITLGSDNALWFT-------ENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGN----------- 204 (299)
T ss_dssp EEEEECTTSCEEEE-------ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTT-----------
T ss_pred ceEEEcCCCCEEEE-------eCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCc-----------
Confidence 89999999977665 223346777776 4332211 010112234567888888544332222
Q ss_pred EEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEE
Q 005140 443 ELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFW 520 (712)
Q Consensus 443 ~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~ 520 (712)
.++.+... .......+..+...+.+++++|+|+.+++...++ .|..|+.. +. +..+ .+. ...+.++++
T Consensus 205 ~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~---~i~~~d~~-g~----~~~~-~~~~~~~~~~~i~~ 274 (299)
T 2z2n_A 205 KIGRITTS-GEITEFKIPTPNARPHAITAGAGIDLWFTEWGAN---KIGRLTSN-NI----IEEY-PIQIKSAEPHGICF 274 (299)
T ss_dssp EEEEECTT-CCEEEEECSSTTCCEEEEEECSTTCEEEEETTTT---EEEEEETT-TE----EEEE-ECSSSSCCEEEEEE
T ss_pred eEEEECCC-CcEEEEECCCCCCCceeEEECCCCCEEEeccCCc---eEEEECCC-Cc----eEEE-eCCCCCCccceEEe
Confidence 23333332 2223344444557789999999998555543555 79999872 21 1122 222 235788899
Q ss_pred ccCCCeEEEEeccCCCceEEEEECCcc
Q 005140 521 SPSGRFIVLAGLKGFNGQLEFYNVDEL 547 (712)
Q Consensus 521 spdg~~l~~~~~~~~dg~v~iwd~~~~ 547 (712)
++|+++++.. .+.|..++..+.
T Consensus 275 -~~g~l~v~~~----~~~l~~~~~~~~ 296 (299)
T 2z2n_A 275 -DGETIWFAME----CDKIGKLTLIKD 296 (299)
T ss_dssp -CSSCEEEEET----TTEEEEEEEC--
T ss_pred -cCCCEEEEec----CCcEEEEEcCcc
Confidence 8888766654 466777776643
No 339
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.33 E-value=1.5e-12 Score=107.10 Aligned_cols=72 Identities=17% Similarity=0.291 Sum_probs=63.4
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+++|||+|||. ...+++|+++|++||.|.. +.++ +++|||||+|.+.++|.+|++.|||..++++
T Consensus 26 ~~~~l~V~nlp~------~~~~~~l~~~f~~~G~i~~--~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 91 (101)
T 2la4_A 26 RVTTAYIGNIPH------FATEADLIPLFQNFGFILD--FKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGR 91 (101)
T ss_dssp SCCEEEEESCCT------TCCHHHHHHHHHTTSCCSE--EEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEcCCCc------ccCHHHHHHHHHhCCCEEE--EEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 468999999997 4458999999999999999 8887 4789999999999999999999999999885
Q ss_pred eEEEEEe
Q 005140 138 HIFAVNM 144 (712)
Q Consensus 138 ~~l~v~~ 144 (712)
.+.|..
T Consensus 92 -~l~V~~ 97 (101)
T 2la4_A 92 -NLRTGW 97 (101)
T ss_dssp -ECCCCB
T ss_pred -EEEEEe
Confidence 666554
No 340
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=6.1e-12 Score=105.36 Aligned_cols=87 Identities=15% Similarity=0.311 Sum_probs=73.3
Q ss_pred CCCEEEECCCCCC-----CchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCC
Q 005140 58 FGNIIVVDNLPVV-----PKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGY 132 (712)
Q Consensus 58 ~~~~~~v~~lp~~-----~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~ 132 (712)
-+++|+|.||... ++++++.++++|+++|++||.|.+ +.| .|+ .++|||||+|.+.++|.+|++.|||.
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~--v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRK--LLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSE--EEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeE--EEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 5789999999533 345677899999999999999999 866 555 38999999999999999999999999
Q ss_pred ccCCceEEEEEeecccccc
Q 005140 133 KLDRAHIFAVNMFDDFDKF 151 (712)
Q Consensus 133 ~~~~~~~l~v~~~~~~~~~ 151 (712)
.++++ .+.|.......++
T Consensus 88 ~~~gr-~l~v~~a~~~~~~ 105 (112)
T 2dit_A 88 WFGGR-QITAQAWDGTTDY 105 (112)
T ss_dssp EETTE-ECEEEECCSCCCS
T ss_pred EECCc-EEEEEEeCCCCCc
Confidence 99985 8888886654444
No 341
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.33 E-value=5.5e-12 Score=110.44 Aligned_cols=75 Identities=19% Similarity=0.282 Sum_probs=63.7
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC-ce
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR-AH 138 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~-~~ 138 (712)
..|||+|||. +..+++|+++|++||.|.+ |.|..+ +++|||||+|.+.++|.+|++.|||..|.+ ..
T Consensus 47 l~l~VgNL~~------~vted~L~~~Fs~fG~V~~--V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~ 114 (164)
T 1sjr_A 47 LRIIVENLFY------PVTLDVLHQIFSKFGTVLK--IITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACC 114 (164)
T ss_dssp EEEEECSCCS------CCCHHHHHHHHHHHSCEEE--EEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCS
T ss_pred EEEEEeCcCC------CCCHHHHHHHHHhcCCEEE--EEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCc
Confidence 4789999997 4458899999999999999 988643 368999999999999999999999999964 24
Q ss_pred EEEEEeec
Q 005140 139 IFAVNMFD 146 (712)
Q Consensus 139 ~l~v~~~~ 146 (712)
.++|....
T Consensus 115 ~L~V~~Ak 122 (164)
T 1sjr_A 115 TLRIDFSK 122 (164)
T ss_dssp CEEEEECS
T ss_pred EEEEEEec
Confidence 78877644
No 342
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.32 E-value=3.9e-12 Score=115.90 Aligned_cols=78 Identities=29% Similarity=0.472 Sum_probs=70.7
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
+++|||+|||. +..+++|+++|++||.|.. +.++.|+.+|+++|||||+|.++++|.+|++.+||..+.++
T Consensus 2 ~~~l~v~nlp~------~~~~~~l~~~f~~~G~i~~--v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~- 72 (167)
T 1fxl_A 2 KTNLIVNYLPQ------NMTQEEFRSLFGSIGEIES--CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK- 72 (167)
T ss_dssp CSEEEEESCCT------TCCHHHHHHHHHTTSCEEE--EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE-
T ss_pred cceEEEcCCCC------CCCHHHHHHHHHhcCCeEE--EEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCc-
Confidence 47999999997 4458899999999999999 99999999999999999999999999999999999999885
Q ss_pred EEEEEee
Q 005140 139 IFAVNMF 145 (712)
Q Consensus 139 ~l~v~~~ 145 (712)
.+.+...
T Consensus 73 ~l~v~~~ 79 (167)
T 1fxl_A 73 TIKVSYA 79 (167)
T ss_dssp ECEEEEC
T ss_pred eEEEEec
Confidence 7777553
No 343
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=3.8e-12 Score=100.97 Aligned_cols=72 Identities=25% Similarity=0.274 Sum_probs=63.0
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHh-CCCccCC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKT-NGYKLDR 136 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~-~~~~~~~ 136 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.++. ++|||||+|.+.++|.+|++.| ||..+++
T Consensus 11 ~~~~l~V~~l~~------~~t~~~l~~~f~~~G~i~~--~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g 76 (85)
T 2ytc_A 11 TITTLYVGGLGD------TITETDLRNHFYQFGEIRT--ITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNG 76 (85)
T ss_dssp SCCCEEEECCTT------TSCHHHHHHHHHTTSCEEE--EEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETT
T ss_pred CccEEEEcCCCC------CCCHHHHHHHHHhCCCEeE--EEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECC
Confidence 357999999997 4558999999999999999 99986 4799999999999999999999 9999988
Q ss_pred ceEEEEEe
Q 005140 137 AHIFAVNM 144 (712)
Q Consensus 137 ~~~l~v~~ 144 (712)
+ .+.|..
T Consensus 77 ~-~l~v~~ 83 (85)
T 2ytc_A 77 R-RLNVKW 83 (85)
T ss_dssp E-ECCEEE
T ss_pred C-EEEEEe
Confidence 5 666654
No 344
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.32 E-value=3.5e-12 Score=133.37 Aligned_cols=80 Identities=24% Similarity=0.370 Sum_probs=72.6
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. .+.+..|.++|++||.|.. |.|+.|+.+|+++|||||+|.+.++|.+|+..|||..|+++
T Consensus 101 ~~~~lfV~nL~~------~~te~~L~~~F~~~G~I~~--v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr 172 (437)
T 3pgw_S 101 AFKTLFVARVNY------DTTESKLRREFEVYGPIKR--IHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGR 172 (437)
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHHcCCeeE--EEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCE
Confidence 457999999997 4558999999999999999 99999999999999999999999999999999999999885
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.|.|....
T Consensus 173 -~i~V~~a~ 180 (437)
T 3pgw_S 173 -RVLVDVER 180 (437)
T ss_pred -EEEEEEeC
Confidence 78877643
No 345
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.31 E-value=3.4e-12 Score=116.43 Aligned_cols=78 Identities=21% Similarity=0.370 Sum_probs=70.8
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
+++|||+|||. +..+++|+++|++||.|.+ +.++.|+.+|+++|||||+|.++++|.+|++.+||..+.++
T Consensus 3 ~~~l~v~nlp~------~~~~~~l~~~f~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~- 73 (168)
T 1b7f_A 3 NTNLIVNYLPQ------DMTDRELYALFRAIGPINT--CRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNK- 73 (168)
T ss_dssp CSEEEEECCCT------TCCHHHHHHHHHTTSCEEE--EECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTE-
T ss_pred ccEEEEeCCCC------CCCHHHHHHHHHhcCCeeE--EEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCc-
Confidence 57999999997 4458899999999999999 99999998999999999999999999999999999999885
Q ss_pred EEEEEee
Q 005140 139 IFAVNMF 145 (712)
Q Consensus 139 ~l~v~~~ 145 (712)
.+.+...
T Consensus 74 ~l~v~~~ 80 (168)
T 1b7f_A 74 RLKVSYA 80 (168)
T ss_dssp ECEEEEC
T ss_pred EEEEEec
Confidence 7776653
No 346
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.7e-12 Score=109.14 Aligned_cols=74 Identities=16% Similarity=0.243 Sum_probs=61.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCC---CCcccEEEEEeCCHHHHHHHHHHhCCCcc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPET---QKSLGYCFIEYNTPQEAELAKEKTNGYKL 134 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~---~~~~g~~fv~~~~~~~a~~a~~~~~~~~~ 134 (712)
-+++|||+|||. +..+++|+++|++||.|. +.++.|+.+ |++||||||+|.++++|.+|++.|++ +
T Consensus 7 ~~~~lfVgnLp~------~~te~~L~~~F~~~G~i~---~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~ 75 (114)
T 2dnl_A 7 GSRKVFVGGLPP------DIDEDEITASFRRFGPLV---VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--E 75 (114)
T ss_dssp CCCCEEEECCCT------TCCHHHHHHHTTTTCCCC---EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--E
T ss_pred CCCEEEEcCCCC------CCCHHHHHHHHHhcCCEE---EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--c
Confidence 357999999997 455899999999999986 478888877 79999999999999999999999843 4
Q ss_pred CCceEEEEE
Q 005140 135 DRAHIFAVN 143 (712)
Q Consensus 135 ~~~~~l~v~ 143 (712)
+++ .+.+.
T Consensus 76 ~G~-~~~~~ 83 (114)
T 2dnl_A 76 DGK-LYLCV 83 (114)
T ss_dssp TTE-EEEEE
T ss_pred CCc-EEEec
Confidence 553 44444
No 347
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.30 E-value=4.8e-10 Score=110.83 Aligned_cols=236 Identities=9% Similarity=-0.011 Sum_probs=140.8
Q ss_pred ccceEEEcCCCcEEE-EEecCc-eEEeecccCcceee-eec-CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEE
Q 005140 215 TESFVQWSPLGTYLA-TVHRQG-AAVWGGANTFNRLM-RYA-HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIF 290 (712)
Q Consensus 215 ~v~~v~~Spdg~~la-t~~~~~-i~iw~~~~~~~~~~-~~~-~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iw 290 (712)
...+++++|+|++++ +...++ |.+|+.. +..... ... ...+.+++++|+|+.+++.. + +.|.+|
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~----------~~i~~~ 92 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATG-STGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-N----------NRVVTL 92 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECTTCCEEEEET-T----------TEEEEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCC-CcccceEeeCCcCCcceeEECCCCCEEEEcC-C----------CEEEEE
Confidence 456799999999776 434444 8899876 333222 122 23588999999999666665 6 789999
Q ss_pred EccCCceeeeccCCC-cccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEE
Q 005140 291 DVRTGKVMRDFKGSA-DEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSW 368 (712)
Q Consensus 291 d~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 368 (712)
|..++. ...+.... ... + .+++++ +|+++++.. ++.|.+|+..+.............+.++++
T Consensus 93 d~~~~~-~~~~~~~~~~~p------------~-~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 93 AAGSNN-QTVLPFDGLNYP------------E-GLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp CTTCSC-CEECCCCSCSSE------------E-EEEECT-TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred eCCCce-EeeeecCCcCCC------------c-ceEECC-CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 975443 33332211 111 1 588999 998777765 889999975543322111122234678888
Q ss_pred CCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEe
Q 005140 369 SPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIK 448 (712)
Q Consensus 369 sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~ 448 (712)
+|+|+++++ ......|..++. ++.....
T Consensus 158 ~~~g~l~v~-------~~~~~~i~~~~~-----------------------~~~~~~~---------------------- 185 (270)
T 1rwi_B 158 DNSGNVYVT-------DTDNNRVVKLEA-----------------------ESNNQVV---------------------- 185 (270)
T ss_dssp CTTCCEEEE-------EGGGTEEEEECT-----------------------TTCCEEE----------------------
T ss_pred eCCCCEEEE-------ECCCCEEEEEec-----------------------CCCceEe----------------------
Confidence 888875543 111223433332 2211100
Q ss_pred cCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC-CceeEEEEccCCCeE
Q 005140 449 ERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG-KQANALFWSPSGRFI 527 (712)
Q Consensus 449 ~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~-~~v~~l~~spdg~~l 527 (712)
. ...+...+.+++++|+|..+++...++ .|.+|+..+... ......+ ..+.+++++|+|+.+
T Consensus 186 --------~-~~~~~~~p~~i~~d~~g~l~v~~~~~~---~v~~~~~~~~~~-----~~~~~~~~~~p~~i~~~~~g~l~ 248 (270)
T 1rwi_B 186 --------L-PFTDITAPWGIAVDEAGTVYVTEHNTN---QVVKLLAGSTTS-----TVLPFTGLNTPLAVAVDSDRTVY 248 (270)
T ss_dssp --------C-CCSSCCSEEEEEECTTCCEEEEETTTS---CEEEECTTCSCC-----EECCCCSCSCEEEEEECTTCCEE
T ss_pred --------e-cccCCCCceEEEECCCCCEEEEECCCC---cEEEEcCCCCcc-----eeeccCCCCCceeEEECCCCCEE
Confidence 0 001124567899999996655554555 799998754321 1111112 357899999999877
Q ss_pred EEEeccCCCceEEEEECCccee
Q 005140 528 VLAGLKGFNGQLEFYNVDELET 549 (712)
Q Consensus 528 ~~~~~~~~dg~v~iwd~~~~~~ 549 (712)
++... ++.|.+|++...+.
T Consensus 249 v~~~~---~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 249 VADRG---NDRVVKLTSLEHHH 267 (270)
T ss_dssp EEEGG---GTEEEEECCCGGGS
T ss_pred EEECC---CCEEEEEcCCCccc
Confidence 77666 89999999875443
No 348
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=4.3e-12 Score=101.78 Aligned_cols=72 Identities=18% Similarity=0.231 Sum_probs=63.3
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+++|+++|++||.|.. +.++ +|||||+|.+.++|.+|++.|||..++++
T Consensus 8 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G~v~~--~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~ 71 (90)
T 2dnp_A 8 NTWKIFVGNVSA------ACTSQELRSLFERRGRVIE--CDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGK 71 (90)
T ss_dssp CSCCEEEESCCT------TCCHHHHHHHHHHHSCEEE--EEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHcCCCEEE--EEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 457999999997 4458999999999999999 9887 34999999999999999999999999985
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 72 -~l~v~~a~ 79 (90)
T 2dnp_A 72 -RINVELST 79 (90)
T ss_dssp -ECEEEESC
T ss_pred -EEEEEECC
Confidence 78877754
No 349
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.30 E-value=7.6e-12 Score=113.86 Aligned_cols=79 Identities=19% Similarity=0.245 Sum_probs=71.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.++.|+.+|.++|||||+|.+.++|.+|++.|||..++++
T Consensus 86 ~~~~l~v~nl~~------~~t~~~l~~~f~~~G~i~~--~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 157 (166)
T 3md3_A 86 DTFNLFVGDLNV------NVDDETLRNAFKDFPSYLS--GHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGR 157 (166)
T ss_dssp TCEEEEEESCCT------TCCHHHHHHHHTTSTTEEE--EEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCceEEECCCCC------CCCHHHHHHHHhccCCeeE--EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCc
Confidence 467999999997 4448999999999999999 99999988999999999999999999999999999999885
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 158 -~i~v~~a 164 (166)
T 3md3_A 158 -PLRINWA 164 (166)
T ss_dssp -ECEEEES
T ss_pred -EEEEEec
Confidence 7777653
No 350
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.30 E-value=5.2e-12 Score=112.32 Aligned_cols=75 Identities=19% Similarity=0.392 Sum_probs=66.2
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
.-.++|||+|||. ...+.+|+++|++||.|.+ +.++.| ++|||||+|.+.++|.+|+..|||..+++
T Consensus 71 ~~~~~l~V~nl~~------~~t~~~l~~~F~~~G~i~~--v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g 137 (150)
T 2i2y_A 71 PLDCKVYVGNLGN------NGNKTELERAFGYYGPLRS--VWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCG 137 (150)
T ss_dssp TTSCEEEEESCCS------CCSCHHHHHHHHHHSCEEE--EEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSS
T ss_pred CCCCEEEEeCCCC------CCCHHHHHHHHHhhCCEEE--EEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3568999999996 3447889999999999999 999987 68999999999999999999999999988
Q ss_pred ceEEEEEee
Q 005140 137 AHIFAVNMF 145 (712)
Q Consensus 137 ~~~l~v~~~ 145 (712)
+ .+.|...
T Consensus 138 ~-~l~v~~a 145 (150)
T 2i2y_A 138 C-RVRVELS 145 (150)
T ss_dssp S-CCEEEEC
T ss_pred e-EEEEEEc
Confidence 5 7777654
No 351
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.30 E-value=3.7e-12 Score=116.68 Aligned_cols=77 Identities=22% Similarity=0.333 Sum_probs=70.7
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.++|||+|||. ...+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 94 ~~~l~v~nlp~------~~t~~~l~~~f~~~G~v~~--v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~- 164 (172)
T 2g4b_A 94 AHKLFIGGLPN------YLNDDQVKELLTSFGPLKA--FNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDK- 164 (172)
T ss_dssp TTCEEEECCCT------TCCHHHHHHHHHTTSCEEE--EEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTE-
T ss_pred CCEEEEEcCCC------cCCHHHHHHHHHhcCCceE--EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCe-
Confidence 68999999997 4448999999999999999 99999988999999999999999999999999999999985
Q ss_pred EEEEEe
Q 005140 139 IFAVNM 144 (712)
Q Consensus 139 ~l~v~~ 144 (712)
.+.|..
T Consensus 165 ~l~V~~ 170 (172)
T 2g4b_A 165 KLLVQR 170 (172)
T ss_dssp ECEEEE
T ss_pred EEEEEe
Confidence 777764
No 352
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.30 E-value=6.6e-12 Score=105.73 Aligned_cols=73 Identities=19% Similarity=0.327 Sum_probs=61.6
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccE-EEEEeCCHHHHHHHHHHhCCCccCC-c
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGY-CFIEYNTPQEAELAKEKTNGYKLDR-A 137 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~-~fv~~~~~~~a~~a~~~~~~~~~~~-~ 137 (712)
-.|||+|||. ...+++|+++|++||.|.+ |.++.+ .+|| |||+|.+.++|.+|++.|||..+.+ +
T Consensus 29 L~I~V~NL~~------~vte~~L~~lFs~yG~V~~--V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~ 95 (130)
T 3zzy_A 29 LRIIVENLFY------PVTLDVLHQIFSKFGTVLK--IITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNAC 95 (130)
T ss_dssp EEEEEESCCS------CCCHHHHHHHHTTSSCEEE--EEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTE
T ss_pred EEEEECCCCC------CCCHHHHHHHHhCcCCEEE--EEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCC
Confidence 3788999997 4448899999999999999 988753 3688 9999999999999999999999976 3
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.++++...
T Consensus 96 ~~LrI~~a 103 (130)
T 3zzy_A 96 CTLRIDFS 103 (130)
T ss_dssp EEEEEEEC
T ss_pred cEEEEEec
Confidence 46766553
No 353
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.30 E-value=6.8e-13 Score=117.01 Aligned_cols=79 Identities=22% Similarity=0.193 Sum_probs=66.4
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceE--EEecc---CCCCCcccEEEEEeCCHHHHHHHHHHhCCC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGL--WMPVD---PETQKSLGYCFIEYNTPQEAELAKEKTNGY 132 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~--~~~~d---~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~ 132 (712)
-+++|||+|||. ...+.+|+++|++||.|.. + .++.| ..+|+++|||||+|.+.++|.+|+..|||+
T Consensus 44 ~~~~l~V~nLp~------~~te~~L~~~F~~~G~i~~--~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~ 115 (143)
T 3egn_A 44 PNCRIYVKNLAK------HVQEKDLKYIFGRYVDFSS--ETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGY 115 (143)
T ss_dssp CCSEEEEEEECT------TCCHHHHHHHHGGGCCTTC--HHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTB
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHHhCCccc--ccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCC
Confidence 468999999997 4458999999999999876 4 22333 238999999999999999999999999999
Q ss_pred ccCCceEEEEEee
Q 005140 133 KLDRAHIFAVNMF 145 (712)
Q Consensus 133 ~~~~~~~l~v~~~ 145 (712)
.++++ .+.|...
T Consensus 116 ~~~g~-~l~V~~a 127 (143)
T 3egn_A 116 VLFGK-PMVVQFA 127 (143)
T ss_dssp EETTE-ECEEEEC
T ss_pred EeCCc-EEEEEEC
Confidence 99985 7877764
No 354
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.30 E-value=3.9e-12 Score=101.44 Aligned_cols=72 Identities=15% Similarity=0.179 Sum_probs=63.6
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+++|||+|||. +..+++|+++|++| .|.. +.++ +++|||||+|.++++|.+|++.|||..++++
T Consensus 4 ~~~~l~V~nLp~------~~t~~~l~~~F~~~-~v~~--~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 68 (88)
T 1wg1_A 4 GSSGILVKNLPQ------DSNCQEVHDLLKDY-DLKY--CYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGK 68 (88)
T ss_dssp CCCCEEEESCCS------SCCHHHHHHHTCSS-CCCC--EEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHhhC-CeEE--EEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCc
Confidence 357899999997 44589999999999 9998 8884 6899999999999999999999999999985
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 69 -~l~V~~a 75 (88)
T 1wg1_A 69 -DLIVQLQ 75 (88)
T ss_dssp -EEEEEEC
T ss_pred -EEEEEEc
Confidence 7887763
No 355
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.30 E-value=1.1e-11 Score=102.34 Aligned_cols=72 Identities=24% Similarity=0.354 Sum_probs=63.5
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.++|||+|||. +..+++|+++|++||.|.. +.++ +|||||+|.+.++|.+|++.|||..++++
T Consensus 11 ~~~l~V~nl~~------~~t~~~l~~~F~~~G~i~~--v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~- 73 (103)
T 2dgu_A 11 VKVLFVRNLAN------TVTEEILEKAFSQFGKLER--VKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGE- 73 (103)
T ss_dssp CCCEEEECCCT------TCCHHHHHHHHHHHSCEEE--EEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTE-
T ss_pred CCEEEEeCCCC------CCCHHHHHHHHHhcCCEEE--EEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCC-
Confidence 57999999997 4458999999999999999 8887 56999999999999999999999999985
Q ss_pred EEEEEeecc
Q 005140 139 IFAVNMFDD 147 (712)
Q Consensus 139 ~l~v~~~~~ 147 (712)
.+.|.....
T Consensus 74 ~l~v~~a~~ 82 (103)
T 2dgu_A 74 NIEIVFAKP 82 (103)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEcCC
Confidence 888877543
No 356
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.29 E-value=6.3e-12 Score=102.12 Aligned_cols=71 Identities=18% Similarity=0.235 Sum_probs=61.6
Q ss_pred CCCEEEECCCCC-CCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 58 FGNIIVVDNLPV-VPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 58 ~~~~~~v~~lp~-~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
-+++|||+|||. -.. +.+|+++|++||.|.. +.++ +|||||+|.+.++|.+|++.|||..+.+
T Consensus 9 ~~~~l~V~nlp~~~~t------~~~l~~~F~~~G~v~~--v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g 72 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVS------KEDLFRIFSPYGHIMQ--INIK--------NAFGFIQFDNPQSVRDAIECESQEMNFG 72 (96)
T ss_dssp CCEEEEEESSTTSCCC------HHHHHHHHTTTCCCCE--EEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBT
T ss_pred CCCEEEEeCCCcccCC------HHHHHHHHHhcCCEEE--EEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 467999999995 333 8889999999999999 8885 7999999999999999999999999988
Q ss_pred ceEEEEEee
Q 005140 137 AHIFAVNMF 145 (712)
Q Consensus 137 ~~~l~v~~~ 145 (712)
+ .+.|...
T Consensus 73 ~-~l~V~~a 80 (96)
T 2kvi_A 73 K-KLILEVS 80 (96)
T ss_dssp T-TBCEEEE
T ss_pred c-EEEEEEc
Confidence 6 6666554
No 357
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.29 E-value=2.9e-12 Score=107.86 Aligned_cols=65 Identities=18% Similarity=0.158 Sum_probs=58.3
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+++|+++|++||.|.. +.|+.| |||||+|.+.++|++|++.|||+.++++
T Consensus 15 ~~~~l~V~nLp~------~~t~~~l~~~F~~~G~v~~--~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr 79 (115)
T 3beg_B 15 SENRVVVSGLPP------SGSWQDLKDHMREAGDVCY--ADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSH 79 (115)
T ss_dssp --CCEEEEECCS------SCCTTHHHHHHGGGSCEEE--EEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCT
T ss_pred CCcEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 357999999997 4448889999999999999 999887 9999999999999999999999999886
No 358
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.29 E-value=1.5e-08 Score=101.52 Aligned_cols=270 Identities=7% Similarity=-0.025 Sum_probs=164.7
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccC--CCcccccCCCCCcCCCCcCeEEecCCCC
Q 005140 254 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKG--SADEFAVGGTGGVAGVSWPVFRWGGGKD 331 (712)
Q Consensus 254 ~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~dg 331 (712)
..+.+++++|+|+.+++...+ +.|.+||.. +... .+.. +.... . .+++++ +|
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~----------~~v~~~d~~-~~~~-~~~~~~~~~~~--------~-----~i~~~~-~g 68 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKA----------NMISCINLD-GKIT-EYPLPTPDAKV--------M-----CLTISS-DG 68 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTT----------TEEEEECTT-CCEE-EEECSSTTCCE--------E-----EEEECT-TS
T ss_pred CCccceEECCCCCEEEEecCC----------CcEEEEcCC-CCeE-EecCCcccCce--------e-----eEEECC-CC
Confidence 458999999999988877666 789999976 5543 3221 11111 1 588899 99
Q ss_pred CEEEEec-CCeEEEEEcCCceeccccc--ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeee-ee
Q 005140 332 KYFAKLG-KNMISVYETESFTLIDKKS--LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK-NL 407 (712)
Q Consensus 332 ~~la~~~-d~~i~iwd~~~~~~~~~~~--~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~ 407 (712)
.++++.. ++.|..|+.. +... ... .....+.+++++|+|.+++. ......|+.++. ........ ..
T Consensus 69 ~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~-------~~~~~~i~~~d~-~g~~~~~~~~~ 138 (299)
T 2z2n_A 69 EVWFTENAANKIGRITKK-GIIK-EYTLPNPDSAPYGITEGPNGDIWFT-------EMNGNRIGRITD-DGKIREYELPN 138 (299)
T ss_dssp CEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSCEEEE-------ETTTTEEEEECT-TCCEEEEECSS
T ss_pred CEEEeCCCCCeEEEECCC-CcEE-EEeCCCcCCCceeeEECCCCCEEEE-------ecCCceEEEECC-CCCEEEecCCC
Confidence 9887776 7889999876 3321 111 12345889999999887665 222346677776 33221111 00
Q ss_pred eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCC
Q 005140 408 FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPR 487 (712)
Q Consensus 408 ~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~ 487 (712)
.......+.+.++|...++....+ .++.++. ........+..+...+.+++++++|+.+++....+
T Consensus 139 ~~~~~~~i~~~~~g~l~v~~~~~~-----------~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~-- 204 (299)
T 2z2n_A 139 KGSYPSFITLGSDNALWFTENQNN-----------AIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGN-- 204 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTT-----------EEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTT--
T ss_pred CCCCCceEEEcCCCCEEEEeCCCC-----------EEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCc--
Confidence 112234567888886555433222 3444443 22222233434456788999999998665544455
Q ss_pred CeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee---ccccceeeEE
Q 005140 488 PDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT---AEHFMATDVE 562 (712)
Q Consensus 488 ~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~---~~~~~v~~~~ 562 (712)
.|.+|+. ++.. .. ..+. ...+.+++++++|+.+++... ++.|..||.. +..... .+...+.+++
T Consensus 205 -~i~~~~~-~g~~----~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~---~~~i~~~d~~-g~~~~~~~~~~~~~~~~i~ 273 (299)
T 2z2n_A 205 -KIGRITT-SGEI----TE-FKIPTPNARPHAITAGAGIDLWFTEWG---ANKIGRLTSN-NIIEEYPIQIKSAEPHGIC 273 (299)
T ss_dssp -EEEEECT-TCCE----EE-EECSSTTCCEEEEEECSTTCEEEEETT---TTEEEEEETT-TEEEEEECSSSSCCEEEEE
T ss_pred -eEEEECC-CCcE----EE-EECCCCCCCceeEEECCCCCEEEeccC---CceEEEECCC-CceEEEeCCCCCCccceEE
Confidence 7999987 4331 12 1222 235789999999986665544 7899999984 443221 2235688899
Q ss_pred ECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 563 WDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 563 ~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
+ ++|+..++... +.+..++...
T Consensus 274 ~-~~g~l~v~~~~------~~l~~~~~~~ 295 (299)
T 2z2n_A 274 F-DGETIWFAMEC------DKIGKLTLIK 295 (299)
T ss_dssp E-CSSCEEEEETT------TEEEEEEEC-
T ss_pred e-cCCCEEEEecC------CcEEEEEcCc
Confidence 9 88886555433 5666666553
No 359
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=1.4e-11 Score=100.75 Aligned_cols=72 Identities=25% Similarity=0.363 Sum_probs=62.9
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhcc--CeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQI--GVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~--g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 135 (712)
-.++|||+|||. ...+.+|+++|++| |.|.. +.++ +|||||+|.+.++|.+|++.|||..++
T Consensus 14 ~~~~l~V~nLp~------~~t~~~l~~~F~~~g~g~v~~--~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (99)
T 2cpd_A 14 SVKILYVRNLML------STSEEMIEKEFNNIKPGAVER--VKKI--------RDYAFVHFSNREDAVEAMKALNGKVLD 77 (99)
T ss_dssp CCCEEEEESCCT------TCCHHHHHHHHHTTSTTCEEE--EEEC--------SSEEEEEESSHHHHHHHHHHHSSEEET
T ss_pred CcCEEEEeCCCC------CCCHHHHHHHHHhcCCcceEE--EEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 457999999997 44588999999999 99988 7764 689999999999999999999999998
Q ss_pred CceEEEEEeec
Q 005140 136 RAHIFAVNMFD 146 (712)
Q Consensus 136 ~~~~l~v~~~~ 146 (712)
++ .+.|....
T Consensus 78 g~-~l~v~~a~ 87 (99)
T 2cpd_A 78 GS-PIEVTLAK 87 (99)
T ss_dssp TE-EEEEECCC
T ss_pred Cc-EEEEEECC
Confidence 85 88887654
No 360
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.28 E-value=9.5e-12 Score=99.04 Aligned_cols=71 Identities=13% Similarity=0.276 Sum_probs=58.0
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC-C
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD-R 136 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~-~ 136 (712)
-.++|||+|||. +..+++|+++|++||.|.+ +.|+.| +||||||+|.+.++|.+ ++|..+. +
T Consensus 10 ~~~~l~V~~Lp~------~~te~~L~~~F~~~G~i~~--v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~ 72 (89)
T 3d2w_A 10 HGSKVFVGRCTE------DMTAEELQQFFCQYGEVVD--VFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIK 72 (89)
T ss_dssp -CCEEEEESCCT------TCCHHHHHHHHTTTSCEEE--EECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEET
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHhccCCEEE--EEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccC
Confidence 467999999998 5559999999999999999 999985 89999999999999983 6776554 2
Q ss_pred ceEEEEEee
Q 005140 137 AHIFAVNMF 145 (712)
Q Consensus 137 ~~~l~v~~~ 145 (712)
.+.+.|...
T Consensus 73 g~~v~v~~a 81 (89)
T 3d2w_A 73 GISVHISNA 81 (89)
T ss_dssp TEEEEEEEC
T ss_pred CEEEEEEEc
Confidence 246776654
No 361
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.28 E-value=4.8e-12 Score=100.91 Aligned_cols=71 Identities=15% Similarity=0.298 Sum_probs=62.4
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhcc----C-------eeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHH
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQI----G-------VIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAK 126 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~ 126 (712)
-.++|||+|||. +..+++|+++|++| | .|.+ +.++.+ +|||||+|.+.++|.+|+
T Consensus 5 ~~~~l~V~nLp~------~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~--~~~~~~------kg~afV~f~~~~~a~~A~ 70 (87)
T 2hzc_A 5 SARRLYVGNIPF------GITEEAMMDFFNAQMRLGGLTQAPGNPVLA--VQINQD------KNFAFLEFRSVDETTQAM 70 (87)
T ss_dssp GGGEEEEESCCT------TCCHHHHHHHHHHHHHHTTCCSSSSCSEEE--EEECSS------SSEEEEEESSHHHHHHHG
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHHHhhhcccccCCCCcceE--EEecCC------CcEEEEEcCCHHHHHHHH
Confidence 357999999997 44589999999999 8 8988 888865 799999999999999999
Q ss_pred HHhCCCccCCceEEEEEe
Q 005140 127 EKTNGYKLDRAHIFAVNM 144 (712)
Q Consensus 127 ~~~~~~~~~~~~~l~v~~ 144 (712)
.|||..++++ .+.|.+
T Consensus 71 -~l~g~~~~g~-~l~V~r 86 (87)
T 2hzc_A 71 -AFDGIIFQGQ-SLKIRR 86 (87)
T ss_dssp -GGTTCEETTE-ECEEEC
T ss_pred -hcCCCEECCe-EEEEeC
Confidence 9999999985 777764
No 362
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.28 E-value=6.3e-12 Score=116.23 Aligned_cols=79 Identities=14% Similarity=0.184 Sum_probs=68.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..++.|+++|++||.|.. |.|+.|. +|+++|||||+|++.++|.+|++.++ ..++|+
T Consensus 108 ~~~~l~V~nLp~------~~t~~~L~~~F~~~G~v~~--v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr 177 (193)
T 2voo_A 108 KNRSVYIKGFPT------DATLDDIKEWLEDKGQVLN--IQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKET 177 (193)
T ss_dssp HHTEEEEECCCT------TCCHHHHHHHHTTSCCEEE--EEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTE
T ss_pred ccCEEEecCCCC------cCCHHHHHHHHhcCCCEEE--EEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCE
Confidence 358999999997 4558999999999999999 9999998 69999999999999999999998665 478885
Q ss_pred eEEEEEeecc
Q 005140 138 HIFAVNMFDD 147 (712)
Q Consensus 138 ~~l~v~~~~~ 147 (712)
.+.|....+
T Consensus 178 -~l~V~~~~~ 186 (193)
T 2voo_A 178 -DLLILFKDD 186 (193)
T ss_dssp -ECEEEETTT
T ss_pred -EEEEEEhHH
Confidence 777776444
No 363
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.28 E-value=1.1e-11 Score=103.99 Aligned_cols=71 Identities=14% Similarity=0.221 Sum_probs=60.3
Q ss_pred EEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccE-EEEEeCCHHHHHHHHHHhCCCccCCc-e
Q 005140 61 IIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGY-CFIEYNTPQEAELAKEKTNGYKLDRA-H 138 (712)
Q Consensus 61 ~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~-~fv~~~~~~~a~~a~~~~~~~~~~~~-~ 138 (712)
.|||+|||. ...+++|+++|++||.|.+ |.|+. + .|| |||+|.+.++|.+|++.|||..|.++ .
T Consensus 27 ~l~V~NL~~------~vt~~~L~~~Fs~yG~V~~--v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~ 92 (124)
T 2e5i_A 27 LLSIQNPLY------PITVDVLYTVCNPVGKVQR--IVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCC 92 (124)
T ss_dssp EEEEESCCS------CCCHHHHHHHHTTTSCEEE--EEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBS
T ss_pred EEEEcCcCC------CCCHHHHHHHHHhcCCEEE--EEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCe
Confidence 578999997 4448899999999999999 98864 2 286 99999999999999999999999763 4
Q ss_pred EEEEEee
Q 005140 139 IFAVNMF 145 (712)
Q Consensus 139 ~l~v~~~ 145 (712)
.++|...
T Consensus 93 ~l~V~~A 99 (124)
T 2e5i_A 93 TLKIEYA 99 (124)
T ss_dssp EEEEECC
T ss_pred EEEEEEe
Confidence 7887754
No 364
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=1.3e-11 Score=99.36 Aligned_cols=72 Identities=14% Similarity=0.180 Sum_probs=63.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.++ +|||||+|.+.++|.+|++.|||..+.++
T Consensus 9 ~~~~l~V~nLp~------~~t~~~l~~~F~~~G~v~~--v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~ 72 (92)
T 2dgt_A 9 ASTKLHVGNISP------TCTNQELRAKFEEYGPVIE--CDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGK 72 (92)
T ss_dssp SSEEEEEESCCS------SCCHHHHHHHHHTTSCCCE--EEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhcCCeEE--EEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 457999999997 4458999999999999999 9887 34999999999999999999999999885
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 73 -~l~V~~a~ 80 (92)
T 2dgt_A 73 -RMHVQLST 80 (92)
T ss_dssp -EEEEEESS
T ss_pred -EEEEEEcc
Confidence 88888754
No 365
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.28 E-value=4.4e-10 Score=115.31 Aligned_cols=176 Identities=11% Similarity=0.029 Sum_probs=122.6
Q ss_pred ccceEEEcCCCcEEEEEecCceEEeecccCcc-----------eeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCC
Q 005140 215 TESFVQWSPLGTYLATVHRQGAAVWGGANTFN-----------RLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDAN 283 (712)
Q Consensus 215 ~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~-----------~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~ 283 (712)
.++.+++|+.+.+|++++.++++||+.. ... ......++.|..++| |+++|+++ .+
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~-~l~~~~~~~~~~~~~~~~~~lp~V~~l~f--d~~~L~v~-~~--------- 105 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQ-LLRDHITSDSTPLTFKWEKEIPDVIFVCF--HGDQVLVS-TR--------- 105 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHH-HHHHHHHSSSCCCCCSEEEECTTEEEEEE--ETTEEEEE-ES---------
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhh-HhhhhhccccccccceEEeeCCCeeEEEE--CCCEEEEE-cC---------
Confidence 6889999999999999999999999866 332 223344556999999 99999998 66
Q ss_pred ccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceecccccccccCe
Q 005140 284 RVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENV 363 (712)
Q Consensus 284 ~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~~~v 363 (712)
+.|++||+.+.........+...+. .+.+.+ . ++++...||.|.+|++.++.... ...+|
T Consensus 106 -~~l~v~dv~sl~~~~~~~~~~~~v~-------------~i~~~~-p-~~av~~~dG~L~v~dl~~~~~~~----~~~~V 165 (388)
T 1xip_A 106 -NALYSLDLEELSEFRTVTSFEKPVF-------------QLKNVN-N-TLVILNSVNDLSALDLRTKSTKQ----LAQNV 165 (388)
T ss_dssp -SEEEEEESSSTTCEEEEEECSSCEE-------------EEEECS-S-EEEEEETTSEEEEEETTTCCEEE----EEESE
T ss_pred -CcEEEEEchhhhccCccceeeccee-------------eEEecC-C-CEEEEECCCCEEEEEccCCcccc----ccCCc
Confidence 7899999876654444444433331 456666 4 24444449999999999776542 34679
Q ss_pred eeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCC---ccceeeee------eeeecceeEEECcCCCEEEEEEcc
Q 005140 364 MDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS---KEELRQKN------LFSVSDCKMYWQSSGDYLAVKVDR 430 (712)
Q Consensus 364 ~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~------~~~~~~~~~~~s~~g~~l~~~~~~ 430 (712)
.+++|||+| +++ +..++.++++..+... ...+.... .+......+.|.+++.++++....
T Consensus 166 s~v~WSpkG--~~v-----g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~~ 234 (388)
T 1xip_A 166 TSFDVTNSQ--LAV-----LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGNV 234 (388)
T ss_dssp EEEEECSSE--EEE-----EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECC
T ss_pred eEEEEcCCc--eEE-----EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcCC
Confidence 999999999 344 4488888877655433 21221100 123456678999999998876553
No 366
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.27 E-value=3.7e-09 Score=106.92 Aligned_cols=240 Identities=12% Similarity=0.126 Sum_probs=149.2
Q ss_pred CCeeEEEecCCCCEEEE-------EcCCCCCCCcCCCccEEEEEEccCCceeeecc----CCCcccccCCCCCcCCCCcC
Q 005140 254 PQVKLIDFSPGEKYLVT-------YSSHEPSNPRDANRVVINIFDVRTGKVMRDFK----GSADEFAVGGTGGVAGVSWP 322 (712)
Q Consensus 254 ~~v~~i~~Spdg~~l~t-------~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 322 (712)
....+++|+++|+.+++ ...+ +.|.+||..+++...... ++.... .
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~----------~~i~~~d~~~g~~~~~~~~~~~~~~~~~--------~----- 74 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPA----------GEILRIDLKTGKKTVICKPEVNGYGGIP--------A----- 74 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEEC----------CEEEEECTTTCCEEEEECCEETTEECCE--------E-----
T ss_pred CCccCceECCCCCEEEEEeccccCCCCC----------CEEEEEeCCCCcEEEEEecccCCCCCCC--------c-----
Confidence 34789999999987777 3445 689999987877543221 011111 1
Q ss_pred eEEecCCC-CCEEEEecCCeEEEEEcCCceeccc-cc----ccccCeeeEEECCCCCeEEEEeecCCCCCC---------
Q 005140 323 VFRWGGGK-DKYFAKLGKNMISVYETESFTLIDK-KS----LKVENVMDFSWSPTDPIISLFVPELGGGNQ--------- 387 (712)
Q Consensus 323 ~~~~s~~d-g~~la~~~d~~i~iwd~~~~~~~~~-~~----~~~~~v~~~~~sp~~~~la~~~~~~~~~~~--------- 387 (712)
.+.+++ + |+++++...+.|.+|+.. ++.... .. .....+.+++++|+|++++. ...+.
T Consensus 75 ~i~~~~-~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~-----~~~~~~~~~~~~~~ 147 (314)
T 1pjx_A 75 GCQCDR-DANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWIT-----APAGEVAPADYTRS 147 (314)
T ss_dssp EEEECS-SSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEE-----ECBCBCTTSCCCBT
T ss_pred eEEEec-CCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEE-----ecCccccccccccc
Confidence 588999 8 776666666689999987 554321 11 11234788999999876654 11111
Q ss_pred ----CeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCC
Q 005140 388 ----PARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKN 463 (712)
Q Consensus 388 ----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~ 463 (712)
...|+.+ .++|.... +..+.
T Consensus 148 ~~~~~~~l~~~-----------------------~~~g~~~~---------------------------------~~~~~ 171 (314)
T 1pjx_A 148 MQEKFGSIYCF-----------------------TTDGQMIQ---------------------------------VDTAF 171 (314)
T ss_dssp TSSSCEEEEEE-----------------------CTTSCEEE---------------------------------EEEEE
T ss_pred ccCCCCeEEEE-----------------------CCCCCEEE---------------------------------eccCC
Confidence 1222222 22221100 00112
Q ss_pred CceEEEEEe----eCCCEEEEEEc-CCCCCeEEEEEeec-ccccCceeEEEEeCC---CceeEEEEccCCCeEEEEeccC
Q 005140 464 DKIIAFAWE----PKGHRFAVIHG-DSPRPDISFYSMRT-AQHAGRVSKLTTLKG---KQANALFWSPSGRFIVLAGLKG 534 (712)
Q Consensus 464 ~~v~~~~~s----p~g~~l~~~~~-d~~~~~v~i~d~~~-~~~~~~~~~~~~~~~---~~v~~l~~spdg~~l~~~~~~~ 534 (712)
.....++|+ |+|+.++++.. ++ .|.+|++.. +.. .....+..+.. .....++++++|+++++...
T Consensus 172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~---~i~~~~~~~~g~~-~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~-- 245 (314)
T 1pjx_A 172 QFPNGIAVRHMNDGRPYQLIVAETPTK---KLWSYDIKGPAKI-ENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG-- 245 (314)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEETTTT---EEEEEEEEETTEE-EEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET--
T ss_pred CCcceEEEecccCCCCCEEEEEECCCC---eEEEEECCCCCcc-ccceEEEECCCCCCCCCCceEECCCCCEEEEEcC--
Confidence 345678999 99987776654 45 899999862 211 01112333332 34678999999988777655
Q ss_pred CCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 535 FNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 535 ~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
++.|.+||..+++.+.. .+...+.+++++|+|++|..++.. ++.|..|++.
T Consensus 246 -~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~----~~~l~~~~~~ 298 (314)
T 1pjx_A 246 -SSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE----NNAVWKFEWQ 298 (314)
T ss_dssp -TTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETT----TTEEEEEECS
T ss_pred -CCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCC----CCeEEEEeCC
Confidence 78999999986665443 334678899999999977666652 5788888876
No 367
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=8.5e-12 Score=100.93 Aligned_cols=71 Identities=11% Similarity=0.159 Sum_probs=62.1
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
.++|||+|||. +..+++|+++|++||.|.+ | +.|+.+|+ ||||+|.+.++|.+|++ |||..++++
T Consensus 8 ~~~l~V~nl~~------~~t~~~l~~~F~~~G~v~~--v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~- 72 (94)
T 2e5g_A 8 LRSVFVSGFPR------GVDSAQLSEYFLAFGPVAS--V--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGH- 72 (94)
T ss_dssp CCEEEEECCCT------TCCHHHHHHHGGGTSCEEE--E--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTE-
T ss_pred CCEEEEECCCC------CCCHHHHHHHHHhcCCeEE--E--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCE-
Confidence 46999999997 4558999999999999988 6 77877776 99999999999999999 999999985
Q ss_pred EEEEEe
Q 005140 139 IFAVNM 144 (712)
Q Consensus 139 ~l~v~~ 144 (712)
.+.|..
T Consensus 73 ~l~V~~ 78 (94)
T 2e5g_A 73 RLRVRP 78 (94)
T ss_dssp ECCCBC
T ss_pred EEEEEE
Confidence 676653
No 368
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.27 E-value=8.9e-12 Score=104.19 Aligned_cols=71 Identities=23% Similarity=0.376 Sum_probs=63.0
Q ss_pred CCCEEEECCCCCCCchhhh-hhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 58 FGNIIVVDNLPVVPKEKFE-KLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~-~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
.+++|||+|||. . ..+++|+++|++||.|.. |.+ ++|||||+|.+.++|.+|++.|||..+++
T Consensus 26 ~~~~l~V~nl~~------~~~t~~~l~~~F~~~G~v~~--v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g 89 (110)
T 1wf1_A 26 INSRVFIGNLNT------ALVKKSDVETIFSKYGRVAG--CSV--------HKGYAFVQYSNERHARAAVLGENGRVLAG 89 (110)
T ss_dssp CSSEEEECSCCC------SSCCHHHHHHHHGGGSCCSE--EEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETT
T ss_pred CCcEEEEeCCCc------ccCCHHHHHHHHHhCCCeEE--EEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 467999999997 3 448999999999999999 888 68999999999999999999999999988
Q ss_pred ceEEEEEee
Q 005140 137 AHIFAVNMF 145 (712)
Q Consensus 137 ~~~l~v~~~ 145 (712)
+ .+.|...
T Consensus 90 ~-~l~V~~a 97 (110)
T 1wf1_A 90 Q-TLDINMA 97 (110)
T ss_dssp E-ECCEEES
T ss_pred e-EEEEEEC
Confidence 5 7777664
No 369
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=5.4e-12 Score=102.71 Aligned_cols=77 Identities=23% Similarity=0.337 Sum_probs=66.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceE-EEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGL-WMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~-~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
-.++|||+|||. ...+.+|+++|++||.|.. + .++.|+.+|. |||+|.+.++|.+|++.|||..+++
T Consensus 14 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G~v~~--~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g 81 (96)
T 2e44_A 14 RIRKLQIRNIPP------HLQWEVLDSLLVQYGVVES--CEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLEN 81 (96)
T ss_dssp SCCCEEEEEECS------SSCHHHHHHHHHHHSCEEE--EEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred CCCEEEEEcCCC------CCCHHHHHHHHHhcCCeEE--EEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECC
Confidence 357999999997 4558999999999999999 9 6999985554 9999999999999999999999998
Q ss_pred ceEEEEEeecc
Q 005140 137 AHIFAVNMFDD 147 (712)
Q Consensus 137 ~~~l~v~~~~~ 147 (712)
+ .+.|.....
T Consensus 82 ~-~l~V~~a~~ 91 (96)
T 2e44_A 82 F-TLKVAYIPD 91 (96)
T ss_dssp C-BCEEEECCC
T ss_pred c-EEEEEEcCc
Confidence 5 788876543
No 370
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.27 E-value=1.5e-11 Score=117.32 Aligned_cols=80 Identities=28% Similarity=0.350 Sum_probs=72.5
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
.-.++|||.|||. ...+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..+++
T Consensus 123 ~~~~~l~v~nlp~------~~t~~~l~~~f~~~G~v~~--v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 194 (216)
T 2qfj_A 123 RAFNRIYVASVHQ------DLSDDDIKSVFEAFGKIKS--ATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGG 194 (216)
T ss_dssp TTSCEEEEECCCT------TCCHHHHHHHHTTSSCEEE--EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred CCCcEEEEeCCCC------cCCHHHHHHHHhccCCeeE--EEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCC
Confidence 3568999999997 4458999999999999999 9999999899999999999999999999999999999998
Q ss_pred ceEEEEEee
Q 005140 137 AHIFAVNMF 145 (712)
Q Consensus 137 ~~~l~v~~~ 145 (712)
+ .+.|...
T Consensus 195 ~-~i~V~~a 202 (216)
T 2qfj_A 195 Q-YLRVGKA 202 (216)
T ss_dssp S-BCEEEEC
T ss_pred c-EEEEEEe
Confidence 6 7777653
No 371
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.27 E-value=9e-12 Score=102.08 Aligned_cols=66 Identities=11% Similarity=0.194 Sum_probs=57.5
Q ss_pred hhhhHHHHHHHh-hccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEEEEEe
Q 005140 75 FEKLEGVIRKIY-SQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNM 144 (712)
Q Consensus 75 ~~~~~~~l~~~f-~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l~v~~ 144 (712)
++.++++|++.| ++||.|.+ +.++.|+ +|+++|||||+|.++++|.+|++.|||..++++ .+.|..
T Consensus 36 f~~~~edl~~~f~~~~G~V~~--v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr-~i~v~~ 102 (104)
T 1jmt_A 36 YDEFFEEVFTEMEEKYGEVEE--MNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQ-PIHAEL 102 (104)
T ss_dssp HHHHHHHHHHHHHHHTCCEEE--EEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTE-ECCEEE
T ss_pred HHHHHHHHHHHhhccCCceEE--EEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCE-EEEEEE
Confidence 345667777888 99999999 9999998 589999999999999999999999999999986 666543
No 372
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=3.6e-11 Score=97.82 Aligned_cols=72 Identities=24% Similarity=0.344 Sum_probs=62.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|| .++ +++|+++|++||.|.. |.|+ +++|||||+|.+.++|.+|++.|||..++++
T Consensus 14 ~~~~l~V~n~-~~t-------~~~l~~~F~~~G~i~~--v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 77 (97)
T 1x5p_A 14 KGNTLYVYGE-DMT-------PTLLRGAFSPFGNIID--LSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESV 77 (97)
T ss_dssp CCSEEEEECS-SCC-------HHHHHHHHTTTSCEEE--EEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTE
T ss_pred CCCEEEEcCC-CCC-------HHHHHHHHhhCCCEEE--EEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 4579999996 333 7889999999999999 8884 6789999999999999999999999999884
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 78 -~l~v~~a~ 85 (97)
T 1x5p_A 78 -QLKVNIAR 85 (97)
T ss_dssp -EEEEECCS
T ss_pred -EEEEEECC
Confidence 88887644
No 373
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.26 E-value=9.5e-12 Score=118.71 Aligned_cols=79 Identities=30% Similarity=0.393 Sum_probs=68.7
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
.+++|||+|||. +..+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..+.++
T Consensus 27 ~~~~l~V~nLp~------~~t~~~l~~~f~~~G~i~~--v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 98 (216)
T 2qfj_A 27 IMSRVYVGSIYY------ELGEDTIRQAFAPFGPIKS--IDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGR 98 (216)
T ss_dssp HHTEEEEECCCT------TCCHHHHHHHHGGGSCEEE--EEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-C
T ss_pred cCCEEEEECCCC------CCCHHHHHHHHHhCCCEEE--EEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCe
Confidence 467999999997 4558999999999999999 99999999999999999999999999999999999999885
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 99 -~l~v~~~ 105 (216)
T 2qfj_A 99 -NIKVGRP 105 (216)
T ss_dssp -CCEEECC
T ss_pred -eEEEecC
Confidence 6777543
No 374
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.26 E-value=1.6e-11 Score=111.82 Aligned_cols=78 Identities=29% Similarity=0.305 Sum_probs=69.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-++.|+|+|||. ...+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 87 ~~~~l~v~nl~~------~~t~~~l~~~f~~~G~i~~--~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 158 (167)
T 1fxl_A 87 RDANLYVSGLPK------TMTQKELEQLFSQYGRIIT--SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 158 (167)
T ss_dssp TTCEEEEESCCT------TCCHHHHHHHHGGGSCEEE--EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred CCCcEEECCCCC------cCCHHHHHHHHHhcCCEeE--EEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 467999999997 4448899999999999999 99999998999999999999999999999999999999886
Q ss_pred e-EEEEE
Q 005140 138 H-IFAVN 143 (712)
Q Consensus 138 ~-~l~v~ 143 (712)
. .+.|.
T Consensus 159 ~~~i~v~ 165 (167)
T 1fxl_A 159 TEPITVK 165 (167)
T ss_dssp SSCCEEE
T ss_pred ccceEEE
Confidence 2 45544
No 375
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.26 E-value=1.8e-11 Score=111.55 Aligned_cols=79 Identities=23% Similarity=0.274 Sum_probs=69.8
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
.-+++|+|+|||. ...+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..+++
T Consensus 87 ~~~~~l~v~nl~~------~~t~~~l~~~f~~~G~i~~--~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 87 IKDTNLYVTNLPR------TITDDQLDTIFGKYGSIVQ--KNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 158 (168)
T ss_dssp TTTCEEEEESCCT------TCCHHHHHHHHTSSSCEEE--EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CCCCCEEEeCCCC------CCCHHHHHHhhhcCCcEEE--EEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence 3467999999997 4448899999999999999 9999999899999999999999999999999999999965
Q ss_pred -ceEEEEE
Q 005140 137 -AHIFAVN 143 (712)
Q Consensus 137 -~~~l~v~ 143 (712)
.+.+.|.
T Consensus 159 ~~~~l~V~ 166 (168)
T 1b7f_A 159 GSQPLSVR 166 (168)
T ss_dssp CSSCCEEE
T ss_pred CCeEEEEE
Confidence 2366654
No 376
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.25 E-value=6.9e-12 Score=114.24 Aligned_cols=78 Identities=15% Similarity=0.241 Sum_probs=70.3
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++ +||..++++
T Consensus 86 ~~~~l~V~nlp~------~~t~~~l~~~F~~~G~i~~--~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~ 156 (167)
T 2cjk_A 86 KTGKIFVGGIGP------DVRPKEFEEFFSQWGTIID--AQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDR 156 (167)
T ss_dssp HCEEEEEEEECT------TCCHHHHHHHHHTTSCCSE--EECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSS
T ss_pred CCCeEEECCCCC------CCCHHHHHHHHHhCccEEE--EEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCe
Confidence 356999999997 4458899999999999999 9999999899999999999999999999998 899999885
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 157 -~i~V~~a 163 (167)
T 2cjk_A 157 -KIEIKRA 163 (167)
T ss_dssp -CEEEEEC
T ss_pred -EEEEeec
Confidence 7777764
No 377
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=6e-12 Score=101.71 Aligned_cols=73 Identities=21% Similarity=0.266 Sum_probs=61.7
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCe-eeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCC-CccC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGV-IKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNG-YKLD 135 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~-v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~-~~~~ 135 (712)
-.++|||+|||. +..+++|+++|++||. |.. +.+ .++|||||+|.+.++|.+|++.||| ..++
T Consensus 7 ~~~~l~V~nLp~------~~t~~~l~~~F~~~G~vv~~--~~~-------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 71 (93)
T 2cqh_A 7 GMNKLYIGNLSP------AVTADDLRQLFGDRKLPLAG--QVL-------LKSGYAFVDYPDQNWAIRAIETLSGKVELH 71 (93)
T ss_dssp CCCCEEEECCCT------TCCHHHHHHHHHHTTCCCSS--CEE-------EETTEEEECCSCHHHHHHHHHHHTTTCEET
T ss_pred CCcEEEEeCCCC------CCCHHHHHHHHHHcCCceEE--EEE-------cCCCEEEEEECCHHHHHHHHHHccCCeeEC
Confidence 346999999997 4558999999999999 555 555 3689999999999999999999999 8998
Q ss_pred CceEEEEEeec
Q 005140 136 RAHIFAVNMFD 146 (712)
Q Consensus 136 ~~~~l~v~~~~ 146 (712)
++ .+.|....
T Consensus 72 g~-~l~v~~a~ 81 (93)
T 2cqh_A 72 GK-IMEVDYSV 81 (93)
T ss_dssp TE-ECEEEECC
T ss_pred CE-EEEEEEcc
Confidence 85 78877643
No 378
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.25 E-value=1.2e-11 Score=116.28 Aligned_cols=81 Identities=21% Similarity=0.298 Sum_probs=73.0
Q ss_pred CCCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
.-.++|||+|||. ...+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..+++
T Consensus 112 ~~~~~l~v~nl~~------~~~~~~l~~~f~~~G~v~~--~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 183 (198)
T 2yh0_A 112 DSAHKLFIGGLPN------YLNDDQVKELLTSFGPLKA--FNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGD 183 (198)
T ss_dssp CCCCEEEEECCCT------TCCHHHHHHHHHTBSCEEE--EEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCC------CCCHHHHHHHHHHcCCccE--EEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 4568999999997 4448899999999999999 9999999899999999999999999999999999999988
Q ss_pred ceEEEEEeec
Q 005140 137 AHIFAVNMFD 146 (712)
Q Consensus 137 ~~~l~v~~~~ 146 (712)
+ .+.|....
T Consensus 184 ~-~l~v~~a~ 192 (198)
T 2yh0_A 184 K-KLLVQRAS 192 (198)
T ss_dssp E-ECEEEESC
T ss_pred E-EEEEEECC
Confidence 5 77777643
No 379
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.25 E-value=1.3e-11 Score=115.67 Aligned_cols=78 Identities=22% Similarity=0.349 Sum_probs=69.4
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+++|+++|++||.|.+ +.++.|+.+|+++|||||+|.+.++|.+|++. +|..++++
T Consensus 12 ~~~~l~V~nLp~------~~te~~l~~~F~~~G~i~~--v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~ 82 (196)
T 1l3k_A 12 QLRKLFIGGLSF------ETTDESLRSHFEQWGTLTD--CVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGR 82 (196)
T ss_dssp GGGEEEEESCCT------TCCHHHHHHHHGGGSCEEE--EEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTE
T ss_pred CCCEEEEeCCCC------CCCHHHHHHHHHhCCCEEE--EEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCE
Confidence 456999999997 4458999999999999999 99999999999999999999999999999986 88888885
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.+...
T Consensus 83 -~l~v~~~ 89 (196)
T 1l3k_A 83 -VVEPKRA 89 (196)
T ss_dssp -ECEEEEC
T ss_pred -Eeeeecc
Confidence 6666654
No 380
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.24 E-value=4.5e-10 Score=127.08 Aligned_cols=254 Identities=9% Similarity=0.058 Sum_probs=153.2
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEE
Q 005140 255 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYF 334 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~l 334 (712)
.+..++|||||++||.+.... +.....|++||+.+|+.+.... +.... ..++|+ ||+.|
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~-----G~~~~~i~v~dl~tg~~~~~~~-~~~k~-------------~~~~Ws--Dg~~l 188 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLA-----GSDWREIHLMDVESKQPLETPL-KDVKF-------------SGISWL--GNEGF 188 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECS-----SCCEEEEEEEETTTCSEEEEEE-EEEES-------------CCCEEE--TTTEE
T ss_pred EEEEEEECCCCCEEEEEEecC-----CCceEEEEEEECCCCCCCcccc-CCcee-------------ccEEEe--CCCEE
Confidence 478899999999999765431 1112689999999998755311 11100 046888 66767
Q ss_pred EEec-CC-------------eEEEEEcCCceecccccc-----cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEe
Q 005140 335 AKLG-KN-------------MISVYETESFTLIDKKSL-----KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQ 395 (712)
Q Consensus 335 a~~~-d~-------------~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~ 395 (712)
+.+. +. .|.+|++.+......... +...+..+.|||||++|++.... ......||+++
T Consensus 189 ~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~---~~~~~~i~~~d 265 (693)
T 3iuj_A 189 FYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAAN---STSGNRLYVKD 265 (693)
T ss_dssp EEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEES---SSSCCEEEEEE
T ss_pred EEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEcc---CCCCcEEEEEE
Confidence 6665 42 388999876543221111 12236788999999998874321 22335889998
Q ss_pred cCCcc-ceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcce-eEEEecCCCCceEEEEEee
Q 005140 396 IPSKE-ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPI-EVLELDNKNDKIIAFAWEP 473 (712)
Q Consensus 396 ~~~~~-~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~l~~h~~~v~~~~~sp 473 (712)
+.... .............. .|+++|..|++.+.... ....|+.++..+... ....+..|...+. .|+|
T Consensus 266 ~~~~~~~~~~l~~~~~~~~~-~~~~~g~~l~~~t~~~~-------~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~ 335 (693)
T 3iuj_A 266 LSQENAPLLTVQGDLDADVS-LVDNKGSTLYLLTNRDA-------PNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHS 335 (693)
T ss_dssp TTSTTCCCEEEECSSSSCEE-EEEEETTEEEEEECTTC-------TTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEE
T ss_pred CCCCCCceEEEeCCCCceEE-EEeccCCEEEEEECCCC-------CCCEEEEEeCCCCCccccEEEecCCCCEE--EEEE
Confidence 76542 22222111111222 37888888888766432 123566555433211 1123445565555 8999
Q ss_pred CCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEe--CC-CceeEEEEccCCCeEEEEecc-CCCceEEEEECCccee
Q 005140 474 KGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTL--KG-KQANALFWSPSGRFIVLAGLK-GFNGQLEFYNVDELET 549 (712)
Q Consensus 474 ~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~--~~-~~v~~l~~spdg~~l~~~~~~-~~dg~v~iwd~~~~~~ 549 (712)
++++|++...++....|++|++.++ ....+ +. ..+..+.++|+++.|++...+ ...+.|+.||+.+++.
T Consensus 336 ~g~~lv~~~~~~g~~~l~~~d~~g~-------~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 336 GSGYLFAEYMVDATARVEQFDYEGK-------RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp ETTEEEEEEEETTEEEEEEECTTSC-------EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred ECCEEEEEEEECCeeEEEEEECCCC-------eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 9999998887554447888887532 22222 22 346677888999887766541 1248899999876653
No 381
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.24 E-value=1.8e-11 Score=112.40 Aligned_cols=78 Identities=19% Similarity=0.241 Sum_probs=68.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC-
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR- 136 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~- 136 (712)
-.++|||+|||. ...+.+|+++|++||.|.. +.++.|+ +|+++|||||+|.+.++|.+|++.|||..+.+
T Consensus 94 ~~~~l~v~nl~~------~~t~~~l~~~F~~~G~i~~--v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g 164 (175)
T 3nmr_A 94 EDRKLFIGMISK------KCTENDIRVMFSSFGQIEE--CRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEG 164 (175)
T ss_dssp GGSEEEEESCCT------TCCHHHHHHHHGGGSCEEE--EEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTT
T ss_pred CCCeEEEcCCCC------cCCHHHHHHHHHhCCCEEE--EEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCC
Confidence 467999999997 4458899999999999999 9999997 79999999999999999999999999987754
Q ss_pred -ceEEEEEe
Q 005140 137 -AHIFAVNM 144 (712)
Q Consensus 137 -~~~l~v~~ 144 (712)
.+.+.|..
T Consensus 165 ~~~~l~V~~ 173 (175)
T 3nmr_A 165 CSSPMVVKF 173 (175)
T ss_dssp CSSCCEEEE
T ss_pred CCCCeEEEe
Confidence 24666654
No 382
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.24 E-value=1.6e-11 Score=116.46 Aligned_cols=79 Identities=28% Similarity=0.309 Sum_probs=69.8
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-..+|||+|||. ...+++|+++|++||.|.. +.|+.|+ +.+||||||+|.+.++|.+|++.|||..++++
T Consensus 102 ~~~~l~v~nl~~------~~t~~~l~~~F~~~G~i~~--~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~ 171 (213)
T 4f02_A 102 GVGNIFIKNLDK------SIDNKALYDTFSAFGNILS--CKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 171 (213)
T ss_dssp CTTEEEEESCCT------TCCHHHHHHHHGGGSCEEE--EEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred ccccceECCccc------ccHHHHHHHHHhhcCCeEE--EEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCE
Confidence 356899999997 4458999999999999999 9999996 55899999999999999999999999999985
Q ss_pred eEEEEEeecc
Q 005140 138 HIFAVNMFDD 147 (712)
Q Consensus 138 ~~l~v~~~~~ 147 (712)
.+.|.....
T Consensus 172 -~i~V~~a~~ 180 (213)
T 4f02_A 172 -KVFVGRFKS 180 (213)
T ss_dssp -ECEEEECCC
T ss_pred -EEEEEEcCC
Confidence 888876543
No 383
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.23 E-value=1.5e-11 Score=111.95 Aligned_cols=76 Identities=24% Similarity=0.489 Sum_probs=67.7
Q ss_pred CEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceE
Q 005140 60 NIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHI 139 (712)
Q Consensus 60 ~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~ 139 (712)
++|||+|||. +..+++|+++|++||.|.+ +.++.|+ +|+++|||||+|.+.++|.+|++.+||..+.++ .
T Consensus 1 R~l~V~nlp~------~~t~~~l~~~f~~~G~i~~--v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~-~ 70 (166)
T 3md3_A 1 RVLYVGNLDK------AITEDILKQYFQVGGPIAN--IKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENN-I 70 (166)
T ss_dssp CEEEEEEEET------TCCHHHHHHHHGGGSCEEE--EEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTE-E
T ss_pred CEEEECCCCC------cCCHHHHHHHHHhcCCeEE--EEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCC-e
Confidence 4799999997 4558999999999999999 9999998 688999999999999999999999999999885 7
Q ss_pred EEEEee
Q 005140 140 FAVNMF 145 (712)
Q Consensus 140 l~v~~~ 145 (712)
+.+...
T Consensus 71 i~v~~~ 76 (166)
T 3md3_A 71 VKINWA 76 (166)
T ss_dssp CEEEEC
T ss_pred eEEEEc
Confidence 777654
No 384
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.23 E-value=1.8e-11 Score=114.58 Aligned_cols=74 Identities=11% Similarity=0.088 Sum_probs=65.2
Q ss_pred CCEEEECCCC-CCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 59 GNIIVVDNLP-VVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 59 ~~~~~v~~lp-~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
+++|||+||| . ...++.|+++|++||.|.+ |.++.| .+|||||+|.++++|.+|++.|||..+.++
T Consensus 4 ~~~l~V~nL~~~------~~~~~~L~~~F~~~G~v~~--v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 70 (205)
T 3tyt_A 4 SPVLMVYGLDQS------KMNCDRVFNVFCLYGNVEK--VKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQ 70 (205)
T ss_dssp CSEEEEECCCTT------TCCHHHHHHHHTTTSCEEE--EEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCEEEEeCCCcc------cCCHHHHHHHHHhcCCeEE--EEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 5799999999 6 3448899999999999999 999876 379999999999999999999999999985
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 71 -~l~v~~s~ 78 (205)
T 3tyt_A 71 -KMNVCVSK 78 (205)
T ss_dssp -ECEEEECS
T ss_pred -eEEEEEcc
Confidence 78877543
No 385
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.22 E-value=1.2e-09 Score=123.59 Aligned_cols=251 Identities=8% Similarity=0.041 Sum_probs=151.3
Q ss_pred eEEecCCCCCEEEEec------CCeEEEEEcCCceecccccccccCe--eeEEECCCCCeEEEEeecCCC------CCCC
Q 005140 323 VFRWGGGKDKYFAKLG------KNMISVYETESFTLIDKKSLKVENV--MDFSWSPTDPIISLFVPELGG------GNQP 388 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~------d~~i~iwd~~~~~~~~~~~~~~~~v--~~~~~sp~~~~la~~~~~~~~------~~~~ 388 (712)
.++||| ||++||.+. ...|++||+.+++.+.. +...+ ..++|+ ||+.|++....... ....
T Consensus 133 ~~~~Sp-Dg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~---~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~ 207 (693)
T 3iuj_A 133 QLSFSR-DGRILAYSLSLAGSDWREIHLMDVESKQPLET---PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQ 207 (693)
T ss_dssp EEEECT-TSSEEEEEEECSSCCEEEEEEEETTTCSEEEE---EEEEEESCCCEEE-TTTEEEEEESSCCC-------CCC
T ss_pred EEEECC-CCCEEEEEEecCCCceEEEEEEECCCCCCCcc---ccCCceeccEEEe-CCCEEEEEEecCcccccccccCCC
Confidence 579999 999998654 25799999999876532 33333 678999 99999885432200 0345
Q ss_pred eEEEEEecCCccc----eeeeee-eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCC
Q 005140 389 ARVSLVQIPSKEE----LRQKNL-FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKN 463 (712)
Q Consensus 389 ~~i~~~~~~~~~~----~~~~~~-~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~ 463 (712)
..|+++++.+... +..... .......+.|+|+|++|++....... . ..+|.++..+.......+..+.
T Consensus 208 ~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~-----~--~~i~~~d~~~~~~~~~~l~~~~ 280 (693)
T 3iuj_A 208 HKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTS-----G--NRLYVKDLSQENAPLLTVQGDL 280 (693)
T ss_dssp CEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSS-----C--CEEEEEETTSTTCCCEEEECSS
T ss_pred cEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCC-----C--cEEEEEECCCCCCceEEEeCCC
Confidence 6789988876532 211111 12223567899999999887654321 1 2444444322211123344445
Q ss_pred CceEEEEEeeCCCEEEEEEcC-CCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEE
Q 005140 464 DKIIAFAWEPKGHRFAVIHGD-SPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFY 542 (712)
Q Consensus 464 ~~v~~~~~sp~g~~l~~~~~d-~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iw 542 (712)
...... |+++|..|++.+.. ++...|..+++.++.. ..+..+..- ...+. .|+|+|++|++....+....|++|
T Consensus 281 ~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~-~~~~~l~~~-~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~ 355 (693)
T 3iuj_A 281 DADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP-AHWRDLIPE-RQQVL--TVHSGSGYLFAEYMVDATARVEQF 355 (693)
T ss_dssp SSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG-GGCEEEECC-CSSCE--EEEEETTEEEEEEEETTEEEEEEE
T ss_pred CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc-cccEEEecC-CCCEE--EEEEECCEEEEEEEECCeeEEEEE
Confidence 555554 78888888877763 3344788888865432 112222211 22232 999999999887652222378999
Q ss_pred ECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEecC
Q 005140 543 NVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNG 591 (712)
Q Consensus 543 d~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g 591 (712)
++.++..... .....+..+.++|+++.|+....+ ....+.++.|++.+
T Consensus 356 d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss-~~tP~~l~~~d~~~ 405 (693)
T 3iuj_A 356 DYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFEN-YAQPPTLYRFEPKS 405 (693)
T ss_dssp CTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEEC-SSSCCEEEEECTTT
T ss_pred ECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecC-CCCCCEEEEEECCC
Confidence 9985543222 234567788899999877766552 01136777777653
No 386
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.21 E-value=2.1e-11 Score=111.93 Aligned_cols=69 Identities=23% Similarity=0.355 Sum_probs=63.4
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCC--CcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQ--KSLGYCFIEYNTPQEAELAKEKTNGYKLD 135 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~--~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 135 (712)
+++|||+|||. +..+++|+++|++||.|.+ +.++.|+.+| +++|||||+|.+.++|.+|++.|||..+.
T Consensus 3 ~~~l~V~nLp~------~~te~~l~~~F~~~G~i~~--v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 73 (175)
T 3nmr_A 3 AIKMFVGQVPR------TWSEKDLRELFEQYGAVYE--INVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVL 73 (175)
T ss_dssp CEEEEEESCCT------TCCHHHHHHHHHTTSCEEE--EEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCC
T ss_pred ceEEEEeCCCC------CCCHHHHHHHHHhCCCEEE--EEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEc
Confidence 56999999997 4558999999999999999 9999999777 89999999999999999999999998764
No 387
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.20 E-value=2.9e-11 Score=113.36 Aligned_cols=79 Identities=15% Similarity=0.185 Sum_probs=70.5
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+.+|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|+.. +|..++++
T Consensus 103 ~~~~l~V~nLp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~ 173 (196)
T 1l3k_A 103 TVKKIFVGGIKE------DTEEHHLRDYFEQYGKIEV--IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGH 173 (196)
T ss_dssp CCSEEEEECCTT------TCCHHHHHHHHTTTSCEEE--EEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTE
T ss_pred CcceEEEeCCCC------CCCHHHHHHHHhcCCCeEE--EEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCE
Confidence 347999999997 4458999999999999999 99999998999999999999999999999986 89999985
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 174 -~i~v~~a~ 181 (196)
T 1l3k_A 174 -NCEVRKAL 181 (196)
T ss_dssp -ECEEEECC
T ss_pred -EEEEEecC
Confidence 77777644
No 388
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.20 E-value=4.2e-11 Score=101.36 Aligned_cols=72 Identities=24% Similarity=0.354 Sum_probs=62.9
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+++|||+||. ++ +++|+++|++||.|.. |.++ +++|||||+|.+.++|.+|++.|||..++++
T Consensus 38 ~~~~lfVgnl~-~t-------e~~L~~~F~~~G~I~~--v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~ 101 (121)
T 2bz2_A 38 KGNTLYVYGED-MT-------PTLLRGAFSPFGNIID--LSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESV 101 (121)
T ss_dssp CCCEEEEECSS-CC-------HHHHHHHHSTTCCCSC--EEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSC
T ss_pred CCCEEEEcCCC-CC-------HHHHHHHHHccCCEEE--EEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 47899999964 33 8889999999999999 8886 5889999999999999999999999999885
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 102 -~l~V~~a~ 109 (121)
T 2bz2_A 102 -QLKVNIAR 109 (121)
T ss_dssp -BCEEEECC
T ss_pred -EEEEEEeC
Confidence 77777644
No 389
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.19 E-value=1.6e-11 Score=111.76 Aligned_cols=74 Identities=19% Similarity=0.392 Sum_probs=63.8
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCce
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAH 138 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~ 138 (712)
+++|||+|||. +..+++|+++|++||.|.+ +.++.|+.+|+++|||||+|.+.++|.+|++. +..++++
T Consensus 3 ~~~l~v~nLp~------~~t~~~l~~~F~~~G~i~~--v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~- 71 (167)
T 2cjk_A 3 SCKMFIGGLNW------DTTEDNLREYFGKYGTVTD--LKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGK- 71 (167)
T ss_dssp GGEEEECSCCT------TCCHHHHHHHHTTTCCEEE--EECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTE-
T ss_pred CcEEEEeCCCC------CCCHHHHHHHHHhCCCEEE--EEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCe-
Confidence 56999999997 4558999999999999999 99999998999999999999999999999994 4556664
Q ss_pred EEEEE
Q 005140 139 IFAVN 143 (712)
Q Consensus 139 ~l~v~ 143 (712)
.+.+.
T Consensus 72 ~i~v~ 76 (167)
T 2cjk_A 72 VIDPK 76 (167)
T ss_dssp ECCCE
T ss_pred Ecccc
Confidence 44433
No 390
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.18 E-value=1.4e-09 Score=111.27 Aligned_cols=287 Identities=8% Similarity=-0.080 Sum_probs=158.4
Q ss_pred ceEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCC-cccccCCC
Q 005140 235 GAAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSA-DEFAVGGT 313 (712)
Q Consensus 235 ~i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~-~~~~~~~~ 313 (712)
.+.+.|.. +++.+.++....-..+.+||||++|+++.........+...+.|.+||+.+++.++++..+. .... . .
T Consensus 47 ~vsvID~~-t~~v~~~i~vG~~P~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~-~-g 123 (368)
T 1mda_H 47 ENWVSCAG-CGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS-V-G 123 (368)
T ss_dssp EEEEEETT-TTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC-B-S
T ss_pred eEEEEECC-CCeEEEEEeCCCCCceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccc-c-C
Confidence 45689999 88988888643312899999999998886210000000111789999999999999986441 0000 0 0
Q ss_pred CCcCCCCcCeEEecCCCCCEEEEec---CCeEEE--EEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCC
Q 005140 314 GGVAGVSWPVFRWGGGKDKYFAKLG---KNMISV--YETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQP 388 (712)
Q Consensus 314 ~~~~~~~~~~~~~s~~dg~~la~~~---d~~i~i--wd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~ 388 (712)
..+. .+.+|| ||++++.+. ++.+.+ +|+.+ +.. +..++. +...|++....+
T Consensus 124 ~~P~-----~ia~Sp-DGk~lyVan~~~~~~v~V~~iD~~t---v~~--i~v~~~--~~~~p~g~~~~~----------- 179 (368)
T 1mda_H 124 PRVH-----IIGNCA-SSACLLFFLFGSSAAAGLSVPGASD---DQL--TKSASC--FHIHPGAAATHY----------- 179 (368)
T ss_dssp CCTT-----SEEECT-TSSCEEEEECSSSCEEEEEETTTEE---EEE--EECSSC--CCCEEEETTEEE-----------
T ss_pred CCcc-----eEEEcC-CCCEEEEEccCCCCeEEEEEEchhh---ceE--EECCCc--eEEccCCCeEEE-----------
Confidence 0011 589999 999888775 467888 88775 111 111111 122333332222
Q ss_pred eEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcc-----cccccccccccEEEEEEecCCcceeEEEecCCC
Q 005140 389 ARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDR-----YTKTKKSTYTGFELFRIKERDIPIEVLELDNKN 463 (712)
Q Consensus 389 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~-----~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~ 463 (712)
..+++|+.+.+.... +. .++... .. +.+ ..
T Consensus 180 ---------------------------~~~~dg~~~~vd~~~~~~~~~~----------v~~~~t-~~-----i~v--g~ 214 (368)
T 1mda_H 180 ---------------------------LGSCPASLAASDLAAAPAAAGI----------VGAQCT-GA-----QNC--SS 214 (368)
T ss_dssp ---------------------------CCCCTTSCEEEECCSSCCCCEE----------CCCCSC-TT-----SCB--CS
T ss_pred ---------------------------EEcCCCCEEEEECccccccCCe----------EEEEee-ee-----eeC--CC
Confidence 112333322221111 00 000000 00 000 02
Q ss_pred CceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC---------C---CceeEEEEccCCCeEEEEe
Q 005140 464 DKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK---------G---KQANALFWSPSGRFIVLAG 531 (712)
Q Consensus 464 ~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~---------~---~~v~~l~~spdg~~l~~~~ 531 (712)
.+. + ++++..++..+. + .|.+.|+.+... ..+..+. + .....++++|+|+.++++.
T Consensus 215 ~P~---~-~~~~~~~~~vs~-~---~V~viD~~~~~~----~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~ 282 (368)
T 1mda_H 215 QAA---Q-ANYPGMLVWAVA-S---SILQGDIPAAGA----TMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILT 282 (368)
T ss_dssp CCE---E-ETTTTEEEECBS-S---CCEEEECCSSCC----EEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEE
T ss_pred Ccc---c-cccCCEEEEEcC-C---EEEEEECCCCcc----eEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEe
Confidence 232 3 666676666666 5 788888754221 1222211 0 0122378999999988764
Q ss_pred ccC-C-----CceEEEEECCcceeeeeccc-cceeeEEECCCCCEEEEEEc-cceeccccEEEEEecC-ceeeeecc-cc
Q 005140 532 LKG-F-----NGQLEFYNVDELETMATAEH-FMATDVEWDPTGRYVATAVT-SVHEMENGFNIWSFNG-KLLYRTLK-DH 601 (712)
Q Consensus 532 ~~~-~-----dg~v~iwd~~~~~~~~~~~~-~~v~~~~~spdg~~l~t~s~-~~~~~d~~v~iw~~~g-~~~~~~~~-~~ 601 (712)
... . .+.+.++|+.+++.+..... .....++|+|||++++++.. . ++.|.++|... +.+..... ..
T Consensus 283 ~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~----~~~VsVID~~t~kvv~~I~vg~~ 358 (368)
T 1mda_H 283 VEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAG----TEVLDIYDAASDQDQSSVELDKG 358 (368)
T ss_dssp EECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETT----TTEEEEEESSSCEEEEECCCCSC
T ss_pred ccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCC----CCeEEEEECCCCcEEEEEECCCC
Confidence 301 0 12455999999998877543 35789999999985444443 2 79999999874 44444433 34
Q ss_pred eeeeEEec
Q 005140 602 FFQFLWRP 609 (712)
Q Consensus 602 i~~~~w~p 609 (712)
.+.+++.+
T Consensus 359 P~~i~~~~ 366 (368)
T 1mda_H 359 PESLSVQN 366 (368)
T ss_dssp CCEEECCC
T ss_pred CCEEEeec
Confidence 55555543
No 391
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.18 E-value=5.5e-11 Score=98.50 Aligned_cols=82 Identities=7% Similarity=0.069 Sum_probs=69.3
Q ss_pred CCEEEECCCCCCCc----hhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Q 005140 59 GNIIVVDNLPVVPK----EKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134 (712)
Q Consensus 59 ~~~~~v~~lp~~~~----~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~ 134 (712)
+++|++.|+=...+ +-++-++++|++.|++||.|.+ +.++.+. ++|||||+|.+.++|.+|++.|||..+
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~--v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIH--IYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSE--EEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEE--EEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 56889999864332 2467799999999999999999 9998764 599999999999999999999999999
Q ss_pred CCceEEEEEeecc
Q 005140 135 DRAHIFAVNMFDD 147 (712)
Q Consensus 135 ~~~~~l~v~~~~~ 147 (712)
+|+ .+.|.....
T Consensus 81 ~GR-~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGK-MITAAYVPL 92 (114)
T ss_dssp TTE-ECEEEEECH
T ss_pred CCE-EEEEEEEcH
Confidence 996 888877654
No 392
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.17 E-value=1.9e-09 Score=110.34 Aligned_cols=288 Identities=8% Similarity=0.001 Sum_probs=162.8
Q ss_pred eEEEEECCe----eEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEec----------Cc-eEEeecccCccee
Q 005140 184 QFVIRSGTD----TEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHR----------QG-AAVWGGANTFNRL 248 (712)
Q Consensus 184 ~~~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~----------~~-i~iw~~~~~~~~~ 248 (712)
.|+...+.+ .+.+.+. ...+.+..+.-...+ .+.+||||++|+++.. ++ |.+||.. +++.+
T Consensus 34 ~yV~~~~~~~~~d~vsvID~-~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~-T~~vv 109 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCA-GCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV-TFLPI 109 (368)
T ss_dssp EEEEECTTTCSSEEEEEEET-TTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT-TCCEE
T ss_pred EEEECCccCCccceEEEEEC-CCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECC-CCCEE
Confidence 455544443 4446665 455555555443445 6999999999998862 34 8899999 88888
Q ss_pred eeecCC---------CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEE--EEccCCceeeeccCCCcccccCCCCCcC
Q 005140 249 MRYAHP---------QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINI--FDVRTGKVMRDFKGSADEFAVGGTGGVA 317 (712)
Q Consensus 249 ~~~~~~---------~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~i--wd~~~g~~~~~~~~~~~~~~~~~~~~~~ 317 (712)
.++..+ ....++|||||++|+++...+ ...|.+ +|+.+ ++.+.....
T Consensus 110 ~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~--------~~~v~V~~iD~~t---v~~i~v~~~----------- 167 (368)
T 1mda_H 110 ADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS--------SAAAGLSVPGASD---DQLTKSASC----------- 167 (368)
T ss_dssp EEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSS--------SCEEEEEETTTEE---EEEEECSSC-----------
T ss_pred EEEECCCccccccCCCcceEEEcCCCCEEEEEccCC--------CCeEEEEEEchhh---ceEEECCCc-----------
Confidence 887532 367899999999999886420 046888 99877 444432211
Q ss_pred CCCcCeEEecCCCCC--EEEEecCCeEEEEEcCC-----ceecccc--cccccCeeeEEECCCCCeEEEEeecCCCCCCC
Q 005140 318 GVSWPVFRWGGGKDK--YFAKLGKNMISVYETES-----FTLIDKK--SLKVENVMDFSWSPTDPIISLFVPELGGGNQP 388 (712)
Q Consensus 318 ~~~~~~~~~s~~dg~--~la~~~d~~i~iwd~~~-----~~~~~~~--~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~ 388 (712)
+...| +++ |++.+.|+.+.+.++.+ ++.+... ....+.-.. . ++++..+++ .+.
T Consensus 168 ------~~~~p-~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~-~-~~~~~~~~~-----vs~--- 230 (368)
T 1mda_H 168 ------FHIHP-GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA-Q-ANYPGMLVW-----AVA--- 230 (368)
T ss_dssp ------CCCEE-EETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE-E-ETTTTEEEE-----CBS---
T ss_pred ------eEEcc-CCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc-c-cccCCEEEE-----EcC---
Confidence 11234 443 33333388888888876 4443211 011111011 3 555665555 222
Q ss_pred eEEEEEecCCcc--ceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCce
Q 005140 389 ARVSLVQIPSKE--ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKI 466 (712)
Q Consensus 389 ~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v 466 (712)
..++.++..... .+....+..... ... ... ....
T Consensus 231 ~~V~viD~~~~~~~v~~~~~~~~~~~---------------------------------------~~~--~~~---p~g~ 266 (368)
T 1mda_H 231 SSILQGDIPAAGATMKAAIDGNESGR---------------------------------------KAD--NFR---SAGF 266 (368)
T ss_dssp SCCEEEECCSSCCEEECCCCSSCTHH---------------------------------------HHT--TEE---ECSS
T ss_pred CEEEEEECCCCcceEEEEEEeccccc---------------------------------------ccc--ccc---cCcc
Confidence 344444442211 000000000000 000 000 1111
Q ss_pred EEEEEeeCCCEEEEEEc-C-CC----CCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceE
Q 005140 467 IAFAWEPKGHRFAVIHG-D-SP----RPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQL 539 (712)
Q Consensus 467 ~~~~~sp~g~~l~~~~~-d-~~----~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v 539 (712)
..++++|++++++++.. . +. ...+.++|+.+.+ .+..+. +.....++|+|||++++++.... ++.|
T Consensus 267 ~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~------vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~-~~~V 339 (368)
T 1mda_H 267 QMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ------TSGPISNGHDSDAIIAAQDGASDNYANSAG-TEVL 339 (368)
T ss_dssp SCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC------EEECCEEEEEECEEEECCSSSCEEEEEETT-TTEE
T ss_pred eeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe------EEEEEECCCCcceEEECCCCCEEEEEccCC-CCeE
Confidence 22578999998887644 2 10 0156699997654 455554 33578999999998655554311 7999
Q ss_pred EEEECCcceeeeeccc-cceeeEEECC
Q 005140 540 EFYNVDELETMATAEH-FMATDVEWDP 565 (712)
Q Consensus 540 ~iwd~~~~~~~~~~~~-~~v~~~~~sp 565 (712)
.++|+.+++.+.+... .....+++.+
T Consensus 340 sVID~~t~kvv~~I~vg~~P~~i~~~~ 366 (368)
T 1mda_H 340 DIYDAASDQDQSSVELDKGPESLSVQN 366 (368)
T ss_dssp EEEESSSCEEEEECCCCSCCCEEECCC
T ss_pred EEEECCCCcEEEEEECCCCCCEEEeec
Confidence 9999999999887543 3444555543
No 393
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.17 E-value=1.5e-07 Score=94.10 Aligned_cols=257 Identities=11% Similarity=0.012 Sum_probs=157.1
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCC--cccccCCCCCcCCCCcCeEEecCCCC
Q 005140 254 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSA--DEFAVGGTGGVAGVSWPVFRWGGGKD 331 (712)
Q Consensus 254 ~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~dg 331 (712)
..+.+++++++|+..++...+ +.|.+||.. ++... +.... ... + .+.+.+ +|
T Consensus 20 ~~p~~i~~d~~g~l~v~~~~~----------~~v~~~~~~-~~~~~-~~~~~~~~~~------------~-~i~~~~-~g 73 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQHKA----------NKISSLDQS-GRIKE-FEVPTPDAKV------------M-CLIVSS-LG 73 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTT----------TEEEEECTT-SCEEE-EECSSTTCCE------------E-EEEECT-TS
T ss_pred CCcceeeECCCCCEEEEcCCC----------CeEEEECCC-CceEE-EECCCCCCcc------------e-eEEECC-CC
Confidence 358899999999988877666 789999976 65433 22111 111 1 578889 99
Q ss_pred CEEEEec-CCeEEEEEcCCceecccccc--cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeee-ee
Q 005140 332 KYFAKLG-KNMISVYETESFTLIDKKSL--KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK-NL 407 (712)
Q Consensus 332 ~~la~~~-d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~ 407 (712)
.++++.. ++.|..|+.. ++.. .... ....+.++++.|+|.+++. ......|..++.. .+..... ..
T Consensus 74 ~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~-------~~~~~~i~~~~~~-g~~~~~~~~~ 143 (300)
T 2qc5_A 74 DIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEGLNGDIWFT-------QLNGDRIGKLTAD-GTIYEYDLPN 143 (300)
T ss_dssp CEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECSTTCEEEE-------ETTTTEEEEECTT-SCEEEEECSS
T ss_pred CEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceECCCCCEEEE-------ccCCCeEEEECCC-CCEEEccCCC
Confidence 8777766 7889999987 5432 1111 2245889999999987665 2223466777665 3222111 10
Q ss_pred eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCC
Q 005140 408 FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPR 487 (712)
Q Consensus 408 ~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~ 487 (712)
.......+.+.++|+. .++..... .++.+...+ ....+.++.+...+..++++++|..+++....+
T Consensus 144 ~~~~~~~i~~d~~g~l-~v~~~~~~----------~i~~~~~~g-~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~-- 209 (300)
T 2qc5_A 144 KGSYPAFITLGSDNAL-WFTENQNN----------SIGRITNTG-KLEEYPLPTNAAAPVGITSGNDGALWFVEIMGN-- 209 (300)
T ss_dssp TTCCEEEEEECTTSSE-EEEETTTT----------EEEEECTTC-CEEEEECSSTTCCEEEEEECTTSSEEEEETTTT--
T ss_pred CCCCceeEEECCCCCE-EEEecCCC----------eEEEECCCC-cEEEeeCCCCCCCcceEEECCCCCEEEEccCCC--
Confidence 1123445678888884 44333211 344444322 222233434456788999999997665544444
Q ss_pred CeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee---ccccceeeEE
Q 005140 488 PDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT---AEHFMATDVE 562 (712)
Q Consensus 488 ~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~---~~~~~v~~~~ 562 (712)
.|.+|+. ++.. .. ..+. ...+.+++++++|+.+++... ++.|..|+.. +..... .....+.+++
T Consensus 210 -~i~~~~~-~g~~----~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~---~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~ 278 (300)
T 2qc5_A 210 -KIGRITT-TGEI----SE-YDIPTPNARPHAITAGKNSEIWFTEWG---ANQIGRITND-NTIQEYQLQTENAEPHGIT 278 (300)
T ss_dssp -EEEEECT-TCCE----EE-EECSSTTCCEEEEEECSTTCEEEEETT---TTEEEEECTT-SCEEEEECCSTTCCCCCEE
T ss_pred -EEEEEcC-CCcE----EE-EECCCCCCCceEEEECCCCCEEEeccC---CCeEEEECCC-CcEEEEECCccCCccceeE
Confidence 7888887 2221 12 1222 235788999999986665544 6899999985 433221 1235678899
Q ss_pred ECCCCCEEE
Q 005140 563 WDPTGRYVA 571 (712)
Q Consensus 563 ~spdg~~l~ 571 (712)
++++|+..+
T Consensus 279 ~~~~g~l~v 287 (300)
T 2qc5_A 279 FGKDGSVWF 287 (300)
T ss_dssp ECTTSCEEE
T ss_pred eCCCCCEEE
Confidence 999998443
No 394
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.17 E-value=8e-09 Score=102.15 Aligned_cols=187 Identities=15% Similarity=0.128 Sum_probs=130.7
Q ss_pred EEEEECCeeEEEecCCCCCCCcccccCCC-cccceEEEcCCCcEEEEEecCceEEeecccCcceeeeecCC---CeeEEE
Q 005140 185 FVIRSGTDTEVLWNDARHLKPEPVYKRSY-WTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHP---QVKLID 260 (712)
Q Consensus 185 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~---~v~~i~ 260 (712)
+++.++++.+.+|+. ..++..-.+..+. ..+.+++++|+|++|+ +..+++..||.. ++.+-++..+ .+.++.
T Consensus 8 lv~~~~~~~v~~~d~-~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~~--G~~~W~~~~~~~~~~~~~~ 83 (276)
T 3no2_A 8 LVGGSGWNKIAIINK-DTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITRD--GRELWNIAAPAGCEMQTAR 83 (276)
T ss_dssp EEECTTCSEEEEEET-TTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECTT--SCEEEEEECCTTCEEEEEE
T ss_pred EEeeCCCCEEEEEEC-CCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECCC--CCEEEEEcCCCCccccccE
Confidence 444556777778887 5676666776665 4678999999999999 445568899985 4555555432 488999
Q ss_pred ecCCCCEEEEEcC-CCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-
Q 005140 261 FSPGEKYLVTYSS-HEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG- 338 (712)
Q Consensus 261 ~Spdg~~l~t~s~-d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~- 338 (712)
+.|+|++|++.+. . +.|..+|. +|+.+..+....... ....... .++..+ +|+++++..
T Consensus 84 ~~~dG~~lv~~~~~~----------~~v~~vd~-~Gk~l~~~~~~~~~~--~~~~~~~-----~v~~~~-~G~~lv~~~~ 144 (276)
T 3no2_A 84 ILPDGNALVAWCGHP----------STILEVNM-KGEVLSKTEFETGIE--RPHAQFR-----QINKNK-KGNYLVPLFA 144 (276)
T ss_dssp ECTTSCEEEEEESTT----------EEEEEECT-TSCEEEEEEECCSCS--SGGGSCS-----CCEECT-TSCEEEEETT
T ss_pred ECCCCCEEEEecCCC----------CEEEEEeC-CCCEEEEEeccCCCC--ccccccc-----CceECC-CCCEEEEecC
Confidence 9999999999887 6 77888884 888887775322100 0000001 357789 999999888
Q ss_pred CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcccee
Q 005140 339 KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELR 403 (712)
Q Consensus 339 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~ 403 (712)
++.|..||.. |+.+.+.... ....++...++|+.+++ ++. ..+|..++..+.+.+-
T Consensus 145 ~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~-----~~~--~~~v~~~d~~tG~~~w 200 (276)
T 3no2_A 145 TSEVREIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVA-----CGD--AHCFVQLNLESNRIVR 200 (276)
T ss_dssp TTEEEEECTT-SCEEEEEECS-SCCCEEEECTTSCEEEE-----CBT--TSEEEEECTTTCCEEE
T ss_pred CCEEEEECCC-CCEEEEEECC-CCccceeEcCCCCEEEE-----eCC--CCeEEEEeCcCCcEEE
Confidence 9999999988 8877665443 34567788899998886 333 3467777766555443
No 395
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.16 E-value=4e-08 Score=100.83 Aligned_cols=235 Identities=13% Similarity=0.123 Sum_probs=144.8
Q ss_pred CCCCCEEEEec--CCeEEEEEcCCc----eeccccc---c----cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEE
Q 005140 328 GGKDKYFAKLG--KNMISVYETESF----TLIDKKS---L----KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLV 394 (712)
Q Consensus 328 ~~dg~~la~~~--d~~i~iwd~~~~----~~~~~~~---~----~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~ 394 (712)
. ++++|+..+ ++.|.|+|+.+. ++..... + ....-..+..+|+| ++++ ..+...+++...|.++
T Consensus 93 ~-~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs-~~g~~~g~~~g~v~vl 169 (462)
T 2ece_A 93 I-ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYIS-ALGNEEGEGPGGILML 169 (462)
T ss_dssp C-CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEE-EEEETTSCSCCEEEEE
T ss_pred c-cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEE-cCCCcCCCCCCeEEEE
Confidence 7 888888777 899999998644 2222110 0 11134667889999 4443 2222225667889999
Q ss_pred ecCCccceeeeeeeeec---ceeEEECcCCCEEEEEEccc---ccccc-------cccccEEEEEEecCCcceeEEEecC
Q 005140 395 QIPSKEELRQKNLFSVS---DCKMYWQSSGDYLAVKVDRY---TKTKK-------STYTGFELFRIKERDIPIEVLELDN 461 (712)
Q Consensus 395 ~~~~~~~~~~~~~~~~~---~~~~~~s~~g~~l~~~~~~~---~~~~~-------~~~~~~~l~~l~~~~~~~~~~~l~~ 461 (712)
+..+.+.+......... ...+.|+|+++.+++..-.. ...++ .+...+.+|++... .....+.+..
T Consensus 170 D~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~-k~~~tI~vg~ 248 (462)
T 2ece_A 170 DHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR-KRIHSLTLGE 248 (462)
T ss_dssp CTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT-EEEEEEESCT
T ss_pred ECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC-cEeeEEecCC
Confidence 99988877665433221 23467899999777753110 00000 12345788887653 3344444521
Q ss_pred CCCceEEEEE--eeCCCEEEEEEc-----CCCCCeEEEEEeecccccCceeEEEE--eC------------------CCc
Q 005140 462 KNDKIIAFAW--EPKGHRFAVIHG-----DSPRPDISFYSMRTAQHAGRVSKLTT--LK------------------GKQ 514 (712)
Q Consensus 462 h~~~v~~~~~--sp~g~~l~~~~~-----d~~~~~v~i~d~~~~~~~~~~~~~~~--~~------------------~~~ 514 (712)
.......+.| +|+|+++.++.. ... +|.+|..+.+. +..... +. +..
T Consensus 249 ~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss--~V~v~~~d~g~----~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~ 322 (462)
T 2ece_A 249 ENRMALELRPLHDPTKLMGFINMVVSLKDLSS--SIWLWFYEDGK----WNAEKVIEIPAEPLEGNLPEILKPFKAVPPL 322 (462)
T ss_dssp TEEEEEEEEECSSTTCCEEEEEEEEETTTCCE--EEEEEEEETTE----EEEEEEEEECCEECCSSCCGGGGGGTEECCC
T ss_pred CCCccceeEeeECCCCCEEEEEEeeeccCCCc--eEEEEEecCCc----eeEEEEEeCCCccccccccccccccccCCCc
Confidence 1123444544 999999888875 432 78777765422 222221 11 123
Q ss_pred eeEEEEccCCCeEEEEeccCCCceEEEEECC---cceeeeecccc----------------ceeeEEECCCCCEEEEEE
Q 005140 515 ANALFWSPSGRFIVLAGLKGFNGQLEFYNVD---ELETMATAEHF----------------MATDVEWDPTGRYVATAV 574 (712)
Q Consensus 515 v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~---~~~~~~~~~~~----------------~v~~~~~spdg~~l~t~s 574 (712)
...+.+||||++|+++..+ .+.|.+||+. +.+++.....+ ....+++||||++|+++.
T Consensus 323 pa~I~lS~DGrfLYVSnrg--~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 323 VTDIDISLDDKFLYLSLWG--IGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCEEECTTSCEEEEEETT--TTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred eeEEEECCCCCEEEEEeCC--CCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 5779999999999999874 6899999985 23444432222 357899999999999888
No 396
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.16 E-value=2.9e-08 Score=99.55 Aligned_cols=232 Identities=7% Similarity=0.024 Sum_probs=143.3
Q ss_pred eEEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc
Q 005140 323 VFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE 400 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~ 400 (712)
.+.|++ ++..|.... ++.|..|+..++.... . .....+.+++++|+|++++. .+ ..|+.++..+.+
T Consensus 17 gp~w~~-~~~~l~~~d~~~~~i~~~d~~~~~~~~-~-~~~~~~~~i~~~~dG~l~v~-------~~--~~l~~~d~~~g~ 84 (297)
T 3g4e_A 17 SPVWEE-VSNSLLFVDIPAKKVCRWDSFTKQVQR-V-TMDAPVSSVALRQSGGYVAT-------IG--TKFCALNWKEQS 84 (297)
T ss_dssp EEEEET-TTTEEEEEETTTTEEEEEETTTCCEEE-E-ECSSCEEEEEEBTTSSEEEE-------ET--TEEEEEETTTTE
T ss_pred CCeEEC-CCCEEEEEECCCCEEEEEECCCCcEEE-E-eCCCceEEEEECCCCCEEEE-------EC--CeEEEEECCCCc
Confidence 578999 776655554 8999999988765421 1 12345889999999996654 11 357778766543
Q ss_pred ceeeeee----eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCC
Q 005140 401 ELRQKNL----FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGH 476 (712)
Q Consensus 401 ~~~~~~~----~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~ 476 (712)
....... .......+.++|+|++++..................+|.+...+.... +..+....+.++|+|+++
T Consensus 85 ~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~---~~~~~~~pngi~~spdg~ 161 (297)
T 3g4e_A 85 AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK---YFDQVDISNGLDWSLDHK 161 (297)
T ss_dssp EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE---EEEEESBEEEEEECTTSC
T ss_pred EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE---EeeccccccceEEcCCCC
Confidence 2111111 011233467899999655443321100000012246888875443221 112234567899999999
Q ss_pred EEEEEEc-CCCCCeEEEEEeeccccc-CceeEEEEeCC--CceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee
Q 005140 477 RFAVIHG-DSPRPDISFYSMRTAQHA-GRVSKLTTLKG--KQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT 552 (712)
Q Consensus 477 ~l~~~~~-d~~~~~v~i~d~~~~~~~-~~~~~~~~~~~--~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~ 552 (712)
.|+++.. .+ .|..|++....+. .....+..+.. .....++++++|++.++... .+.|..||..+++.+..
T Consensus 162 ~lyv~~~~~~---~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~---~~~v~~~d~~tG~~~~~ 235 (297)
T 3g4e_A 162 IFYYIDSLSY---SVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN---GGRVIRLDPVTGKRLQT 235 (297)
T ss_dssp EEEEEEGGGT---EEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET---TTEEEEECTTTCCEEEE
T ss_pred EEEEecCCCC---cEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC---CCEEEEEcCCCceEEEE
Confidence 8877665 34 8999988421111 01122333332 34678999999987766655 67899999998887765
Q ss_pred c--cccceeeEEEC-CCCCEEEEEEc
Q 005140 553 A--EHFMATDVEWD-PTGRYVATAVT 575 (712)
Q Consensus 553 ~--~~~~v~~~~~s-pdg~~l~t~s~ 575 (712)
. +...+++++|+ |+++.|..++.
T Consensus 236 i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 236 VKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EECCCCCceEEEEeCCCCCEEEEEcC
Confidence 3 33578999998 89988777665
No 397
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.15 E-value=4.2e-08 Score=99.10 Aligned_cols=245 Identities=8% Similarity=0.007 Sum_probs=143.0
Q ss_pred cccceEEEcCCCcEEEE-------EecC-ceEEeecccCcceee-ee-----cCCCeeEEEecCC-CCEEEEEcCCCCCC
Q 005140 214 WTESFVQWSPLGTYLAT-------VHRQ-GAAVWGGANTFNRLM-RY-----AHPQVKLIDFSPG-EKYLVTYSSHEPSN 278 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat-------~~~~-~i~iw~~~~~~~~~~-~~-----~~~~v~~i~~Spd-g~~l~t~s~d~~~~ 278 (712)
....+++|+++|.++++ ...+ +|.+|+.. +++... .. ....+.+++++|+ |+.+++...
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~-~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~----- 91 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLK-TGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR----- 91 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTT-TCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-----
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCC-CCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC-----
Confidence 34568999999998887 3444 48899976 444322 11 1245899999999 775555543
Q ss_pred CcCCCccEEEEEEccCCceeee-ccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-C---------------Ce
Q 005140 279 PRDANRVVINIFDVRTGKVMRD-FKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-K---------------NM 341 (712)
Q Consensus 279 ~~~~~~~~I~iwd~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d---------------~~ 341 (712)
..|.+||.. ++.... ........ ... ...+.+++ +|+++++.. + +.
T Consensus 92 ------~~l~~~d~~-g~~~~~~~~~~~~~~-------~~~--~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~ 154 (314)
T 1pjx_A 92 ------LGLLVVQTD-GTFEEIAKKDSEGRR-------MQG--CNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGS 154 (314)
T ss_dssp ------TEEEEEETT-SCEEECCSBCTTSCB-------CBC--CCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEE
T ss_pred ------CCEEEEeCC-CCEEEEEeccCCCcc-------ccC--CcCEEECC-CCCEEEEecCcccccccccccccCCCCe
Confidence 368899987 765433 22111000 000 11689999 998777765 4 45
Q ss_pred EEEEEcCCceecccccccccCeeeEEEC----CCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEE
Q 005140 342 ISVYETESFTLIDKKSLKVENVMDFSWS----PTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYW 417 (712)
Q Consensus 342 i~iwd~~~~~~~~~~~~~~~~v~~~~~s----p~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (712)
|..|+.. ++... ..........++|+ |+++.|.+. ... ...|+.|+...
T Consensus 155 l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~----~~~--~~~i~~~~~~~------------------- 207 (314)
T 1pjx_A 155 IYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVA----ETP--TKKLWSYDIKG------------------- 207 (314)
T ss_dssp EEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEE----ETT--TTEEEEEEEEE-------------------
T ss_pred EEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEE----ECC--CCeEEEEECCC-------------------
Confidence 6666654 33221 11223346778888 888655441 112 23444443210
Q ss_pred CcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCC-CceEEEEEeeCCCEEEEEEcCCCCCeEEEEEee
Q 005140 418 QSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKN-DKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMR 496 (712)
Q Consensus 418 s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~-~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~ 496 (712)
+|.... ..++ ..+..+. ..+..++++++|+.+++...++ .|.+|+..
T Consensus 208 --~g~~~~----------------~~~~-----------~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~---~i~~~d~~ 255 (314)
T 1pjx_A 208 --PAKIEN----------------KKVW-----------GHIPGTHEGGADGMDFDEDNNLLVANWGSS---HIEVFGPD 255 (314)
T ss_dssp --TTEEEE----------------EEEE-----------EECCCCSSCEEEEEEEBTTCCEEEEEETTT---EEEEECTT
T ss_pred --CCcccc----------------ceEE-----------EECCCCCCCCCCceEECCCCCEEEEEcCCC---EEEEEcCC
Confidence 010000 0000 1121222 5567899999998888777766 89999986
Q ss_pred cccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCc
Q 005140 497 TAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDE 546 (712)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~ 546 (712)
++... .....+...+.+++|+|+|+.|++++.. ++.|..|++..
T Consensus 256 ~g~~~----~~~~~~~~~~~~i~~~~dg~~l~v~~~~--~~~l~~~~~~~ 299 (314)
T 1pjx_A 256 GGQPK----MRIRCPFEKPSNLHFKPQTKTIFVTEHE--NNAVWKFEWQR 299 (314)
T ss_dssp CBSCS----EEEECSSSCEEEEEECTTSSEEEEEETT--TTEEEEEECSS
T ss_pred CCcEe----EEEeCCCCCceeEEECCCCCEEEEEeCC--CCeEEEEeCCC
Confidence 44321 2223334568899999999967666531 57899999874
No 398
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.15 E-value=1.3e-07 Score=94.66 Aligned_cols=269 Identities=11% Similarity=0.026 Sum_probs=162.1
Q ss_pred CcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeec--CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEE
Q 005140 213 YWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYA--HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINI 289 (712)
Q Consensus 213 ~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~--~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~i 289 (712)
.....+++++++|++.++...++ |.+|+.. ......... ...+.+++++++|+..++.... +.|..
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~----------~~v~~ 87 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGA----------NKIGK 87 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTT----------TEEEE
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCC----------CeEEE
Confidence 34567899999999887776555 8899877 222222222 2358999999999988777666 78999
Q ss_pred EEccCCceeeeccCC--CcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceeccc-ccccccCeee
Q 005140 290 FDVRTGKVMRDFKGS--ADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDK-KSLKVENVMD 365 (712)
Q Consensus 290 wd~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~-~~~~~~~v~~ 365 (712)
||.. ++.. .+... .... ..+++.+ +|.++++.. ++.|..|+.. +..... .......+.+
T Consensus 88 ~d~~-g~~~-~~~~~~~~~~~-------------~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~ 150 (300)
T 2qc5_A 88 LSKK-GGFT-EYPLPQPDSGP-------------YGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAF 150 (300)
T ss_dssp ECTT-SCEE-EEECSSTTCCE-------------EEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEE
T ss_pred ECCC-CCeE-EecCCCCCCCC-------------ccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCcee
Confidence 9976 6543 23221 1111 1578889 998877776 7899999887 544321 1112345889
Q ss_pred EEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeee--eeecceeEEECcCCCEEEEEEcccccccccccccEE
Q 005140 366 FSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNL--FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFE 443 (712)
Q Consensus 366 ~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 443 (712)
+++.|+|+..+. ......|+.++. ..+... ... .......+.++++|...++....+ .
T Consensus 151 i~~d~~g~l~v~-------~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~-----------~ 210 (300)
T 2qc5_A 151 ITLGSDNALWFT-------ENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIMGN-----------K 210 (300)
T ss_dssp EEECTTSSEEEE-------ETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETTTT-----------E
T ss_pred EEECCCCCEEEE-------ecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccCCC-----------E
Confidence 999999985554 222345777776 332221 111 112234567788886544332222 2
Q ss_pred EEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEc
Q 005140 444 LFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWS 521 (712)
Q Consensus 444 l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~s 521 (712)
++.+...+ ......++.+...+.+++++++|+.+++...++ .|..|+. ++. ... ..+. ...+.+++++
T Consensus 211 i~~~~~~g-~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~---~i~~~~~-~g~----~~~-~~~~~~~~~~~~i~~~ 280 (300)
T 2qc5_A 211 IGRITTTG-EISEYDIPTPNARPHAITAGKNSEIWFTEWGAN---QIGRITN-DNT----IQE-YQLQTENAEPHGITFG 280 (300)
T ss_dssp EEEECTTC-CEEEEECSSTTCCEEEEEECSTTCEEEEETTTT---EEEEECT-TSC----EEE-EECCSTTCCCCCEEEC
T ss_pred EEEEcCCC-cEEEEECCCCCCCceEEEECCCCCEEEeccCCC---eEEEECC-CCc----EEE-EECCccCCccceeEeC
Confidence 34443322 222233434456788999999998555544445 7889987 222 111 2222 2357889999
Q ss_pred cCCCeEEEEeccCCCceEEEEEC
Q 005140 522 PSGRFIVLAGLKGFNGQLEFYNV 544 (712)
Q Consensus 522 pdg~~l~~~~~~~~dg~v~iwd~ 544 (712)
++|+.++ ++. . .|..++.
T Consensus 281 ~~g~l~v-~~~---~-~i~~~~p 298 (300)
T 2qc5_A 281 KDGSVWF-ALK---C-KIGKLNL 298 (300)
T ss_dssp TTSCEEE-ECS---S-EEEEEEE
T ss_pred CCCCEEE-Ecc---C-ceEEeCC
Confidence 9998554 433 4 6666664
No 399
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.15 E-value=2.5e-08 Score=100.07 Aligned_cols=230 Identities=12% Similarity=0.113 Sum_probs=131.2
Q ss_pred ceEEEcCCCcEEEEEe-cCc-eEEeecccCcceeeeecC-CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc
Q 005140 217 SFVQWSPLGTYLATVH-RQG-AAVWGGANTFNRLMRYAH-PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR 293 (712)
Q Consensus 217 ~~v~~Spdg~~lat~~-~~~-i~iw~~~~~~~~~~~~~~-~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~ 293 (712)
-++.|+|++..|+... ..+ |..|+.. +... ..+.. ..+.+++++|+|+++++. . ..|.+||..
T Consensus 16 Egp~w~~~~~~l~~~d~~~~~i~~~d~~-~~~~-~~~~~~~~~~~i~~~~dG~l~v~~--~----------~~l~~~d~~ 81 (297)
T 3g4e_A 16 ESPVWEEVSNSLLFVDIPAKKVCRWDSF-TKQV-QRVTMDAPVSSVALRQSGGYVATI--G----------TKFCALNWK 81 (297)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETT-TCCE-EEEECSSCEEEEEEBTTSSEEEEE--T----------TEEEEEETT
T ss_pred cCCeEECCCCEEEEEECCCCEEEEEECC-CCcE-EEEeCCCceEEEEECCCCCEEEEE--C----------CeEEEEECC
Confidence 4689999655554444 444 8899988 4433 23333 349999999999966554 3 468999987
Q ss_pred CCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-C---------CeEEEEEcCCceecccccccccCe
Q 005140 294 TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-K---------NMISVYETESFTLIDKKSLKVENV 363 (712)
Q Consensus 294 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d---------~~i~iwd~~~~~~~~~~~~~~~~v 363 (712)
+++............ ......++++| +|+++++.. . ....||.+.....+..........
T Consensus 82 ~g~~~~~~~~~~~~~---------~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~p 151 (297)
T 3g4e_A 82 EQSAVVLATVDNDKK---------NNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDIS 151 (297)
T ss_dssp TTEEEEEEECCTTCS---------SEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBE
T ss_pred CCcEEEEEecCCCCC---------CCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccc
Confidence 776433222111000 00011588999 999777543 2 234555554221111111223345
Q ss_pred eeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEE
Q 005140 364 MDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFE 443 (712)
Q Consensus 364 ~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 443 (712)
+.++|+|+++.|.+. .....+|+.|+... .+|.. . . ..
T Consensus 152 ngi~~spdg~~lyv~------~~~~~~i~~~~~d~--------------------~~G~~-~---~------------~~ 189 (297)
T 3g4e_A 152 NGLDWSLDHKIFYYI------DSLSYSVDAFDYDL--------------------QTGQI-S---N------------RR 189 (297)
T ss_dssp EEEEECTTSCEEEEE------EGGGTEEEEEEECT--------------------TTCCE-E---E------------EE
T ss_pred cceEEcCCCCEEEEe------cCCCCcEEEEeccC--------------------CCCcc-c---C------------cE
Confidence 788889888876542 22233455554310 11110 0 0 00
Q ss_pred EEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEE--eCCCceeEEEEc
Q 005140 444 LFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTT--LKGKQANALFWS 521 (712)
Q Consensus 444 l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~--~~~~~v~~l~~s 521 (712)
++ ..+..+.+.+..++++++|+..++....+ .|..|+..++. .+.. ++...+++++|+
T Consensus 190 ~~-----------~~~~~~~~~p~g~~~d~~G~lwva~~~~~---~v~~~d~~tG~------~~~~i~~p~~~~t~~~f~ 249 (297)
T 3g4e_A 190 SV-----------YKLEKEEQIPDGMCIDAEGKLWVACYNGG---RVIRLDPVTGK------RLQTVKLPVDKTTSCCFG 249 (297)
T ss_dssp EE-----------EECCGGGCEEEEEEEBTTSCEEEEEETTT---EEEEECTTTCC------EEEEEECSSSBEEEEEEE
T ss_pred EE-----------EECCCCCCCCCeeEECCCCCEEEEEcCCC---EEEEEcCCCce------EEEEEECCCCCceEEEEe
Confidence 00 11111234567889999998777766666 79999986554 3333 334468999998
Q ss_pred -cCCCeEEEEec
Q 005140 522 -PSGRFIVLAGL 532 (712)
Q Consensus 522 -pdg~~l~~~~~ 532 (712)
|+++.|++++.
T Consensus 250 g~d~~~L~vt~~ 261 (297)
T 3g4e_A 250 GKNYSEMYVTCA 261 (297)
T ss_dssp SGGGCEEEEEEB
T ss_pred CCCCCEEEEEcC
Confidence 89988877664
No 400
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.13 E-value=1.1e-10 Score=109.78 Aligned_cols=79 Identities=22% Similarity=0.260 Sum_probs=65.2
Q ss_pred CCCEEEECCCCCCC---chhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Q 005140 58 FGNIIVVDNLPVVP---KEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134 (712)
Q Consensus 58 ~~~~~~v~~lp~~~---~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~ 134 (712)
-.++|||+|||.-. .-+...+++.|+++|++||.|.+ |.|+. +||||||+|.+.++|+.|++.|||..|
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~--v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDR--IRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEE--EEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEE--EEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 46799999999621 11223479999999999999999 99985 579999999999999999999999999
Q ss_pred ------------CCceEEEEEee
Q 005140 135 ------------DRAHIFAVNMF 145 (712)
Q Consensus 135 ------------~~~~~l~v~~~ 145 (712)
.+ +.|.|...
T Consensus 205 ~~~~~~e~~~~~~g-r~L~V~wA 226 (240)
T 3u1l_A 205 LLPSDKEWDDRREG-TGLLVKWA 226 (240)
T ss_dssp CCTTSTTGGGGGGS-CCCEEEEC
T ss_pred eccccccccccCCC-CEEEEEEc
Confidence 55 47777664
No 401
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=3.5e-11 Score=95.97 Aligned_cols=70 Identities=17% Similarity=0.253 Sum_probs=56.7
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc--C
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL--D 135 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~--~ 135 (712)
-+++|||+|||. +..+++|+++|++||.|.+ +.++.| +||||||+|.+.++|++ +++..+ .
T Consensus 4 ~~~~l~V~nLp~------~~te~~l~~~F~~~G~i~~--v~i~~~-----~~g~afV~f~~~~~a~~----~~~~~~~~~ 66 (88)
T 1wf0_A 4 GSSGVFVGRCTG------DMTEDELREFFSQYGDVMD--VFIPKP-----FRAFAFVTFADDQIAQS----LCGEDLIIK 66 (88)
T ss_dssp CCCEEEEESCCS------SSCHHHHHHHSTTTSCCCE--EECCSS-----CCSCCEEECSCHHHHHH----TTTCEEEET
T ss_pred CCcEEEEeCCCC------CCCHHHHHHHHHHcCCeeE--EEEecC-----CCCEEEEEECCHHHHHH----HhcCCceeC
Confidence 357999999997 4458999999999999999 999875 78999999999999975 455544 4
Q ss_pred CceEEEEEee
Q 005140 136 RAHIFAVNMF 145 (712)
Q Consensus 136 ~~~~l~v~~~ 145 (712)
+ +.+.|...
T Consensus 67 g-~~l~v~~a 75 (88)
T 1wf0_A 67 G-ISVHISNA 75 (88)
T ss_dssp T-EEEEEECC
T ss_pred C-EEEEEEec
Confidence 4 46666654
No 402
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.10 E-value=5e-09 Score=111.37 Aligned_cols=284 Identities=9% Similarity=0.090 Sum_probs=172.1
Q ss_pred CCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceee--eccCCCcccccCCCCCcCCCCcCeEEe-c-CCCCCEEEEec
Q 005140 263 PGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMR--DFKGSADEFAVGGTGGVAGVSWPVFRW-G-GGKDKYFAKLG 338 (712)
Q Consensus 263 pdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-s-~~dg~~la~~~ 338 (712)
|||++|.....+. ..|.+.|+.+.++.+ .+....... .+++ + | +++++.+.+
T Consensus 99 ~DG~~lfVnd~~~---------~rVavIdl~t~~~~~ii~ip~g~~ph--------------g~~~~~~p-~~~~v~~~~ 154 (595)
T 1fwx_A 99 YDGRFLFMNDKAN---------TRVARVRCDVMKCDAILEIPNAKGIH--------------GLRPQKWP-RSNYVFCNG 154 (595)
T ss_dssp EEEEEEEEEETTT---------TEEEEEETTTTEEEEEEECSSCCSEE--------------EEEECCSS-BCSEEEEEE
T ss_pred cCCCEEEEEcCCC---------CEEEEEECCCceEeeEEeCCCCCCCc--------------ceeeeecC-CCcEEEEec
Confidence 3899998877651 679999999999877 443333222 3565 4 8 888887772
Q ss_pred -------------------CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCC----------Ce
Q 005140 339 -------------------KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQ----------PA 389 (712)
Q Consensus 339 -------------------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~----------~~ 389 (712)
++.+.++|..+++.+....... ....++.+|+|+++.+.+... ... ..
T Consensus 155 ~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~s--e~~~~i~~~~~~~~d 231 (595)
T 1fwx_A 155 EDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNS--EKGMTLPEMTAAEMD 231 (595)
T ss_dssp CSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCT--TCCSSHHHHTCCSEE
T ss_pred ccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCc--ccCcchhhccccccc
Confidence 4689999999988776543322 456788999999988743221 110 12
Q ss_pred EEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEec--CCcceeEEEecCCCCceE
Q 005140 390 RVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKE--RDIPIEVLELDNKNDKII 467 (712)
Q Consensus 390 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~~l~~h~~~v~ 467 (712)
.+..++.+... ...++|++... +.+.+.+... .......+.. .....
T Consensus 232 ~v~V~~~~~~~---------------~~v~~Gk~~~i-------------~~V~VID~~~~~~~~~~~~Ipv---g~~Ph 280 (595)
T 1fwx_A 232 HIVVFNIAEIE---------------KAIAAGDYQEL-------------NGVKVVDGRKEASSLFTRYIPI---ANNPH 280 (595)
T ss_dssp EEEEEEHHHHH---------------HHHHHTCSEEE-------------TTEEEEECSGGGCCSSEEEEEE---ESSCC
T ss_pred eEEEeecccee---------------EeccCCCeeEE-------------CcEEEEeCcccCCceeEEEEec---CCCce
Confidence 23333332211 12344544322 1245555554 1111333444 34667
Q ss_pred EEEEeeCCCEEEEEEcCCCCCeEEEEEeeccc------ccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEE
Q 005140 468 AFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQ------HAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLE 540 (712)
Q Consensus 468 ~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~------~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~ 540 (712)
++.++|||++++++.... ++|.++|+.+.. ...+...+..+. +.....++|+|+| ++++... .+++|.
T Consensus 281 Gv~~sPDGk~v~V~~~~s--~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~--ldsqV~ 355 (595)
T 1fwx_A 281 GCNMAPDKKHLCVAGKLS--PTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLF--LDSQVV 355 (595)
T ss_dssp CEEECTTSSEEEEECTTS--SBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEET--TTTEEE
T ss_pred EEEEcCCCCEEEEeCCCC--CeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEe--cCCcEE
Confidence 899999999999887643 389999997532 001111334444 4457889999999 6655543 389999
Q ss_pred EEECCc----------ceeeeeccc-cce------eeEEECCCCCEEEEEEccceeccccE-----------EEEEecCc
Q 005140 541 FYNVDE----------LETMATAEH-FMA------TDVEWDPTGRYVATAVTSVHEMENGF-----------NIWSFNGK 592 (712)
Q Consensus 541 iwd~~~----------~~~~~~~~~-~~v------~~~~~spdg~~l~t~s~~~~~~d~~v-----------~iw~~~g~ 592 (712)
.||++. .+.+.+... ... ..+..+|||+||+++..- ....+ .+++++|.
T Consensus 356 kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~---skdr~~~~gp~~~~~~ql~dis~~ 432 (595)
T 1fwx_A 356 KWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKF---SKDRFLNVGPLKPENDQLIDISGD 432 (595)
T ss_dssp EEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESC---CTTSSCCCCSSCCEEEEEEECSSS
T ss_pred EEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCC---CccccccCCCCCCCcceEEEcCCC
Confidence 999986 344443211 111 234668999999998763 01223 88999876
Q ss_pred eeeeecc----cceeeeEEecCCC
Q 005140 593 LLYRTLK----DHFFQFLWRPRPP 612 (712)
Q Consensus 593 ~~~~~~~----~~i~~~~w~p~~~ 612 (712)
.+...+. .....+...|+..
T Consensus 433 ~m~lv~d~p~~~ePh~~~i~~~~~ 456 (595)
T 1fwx_A 433 KMVLVHDGPTFAEPHDAIAVHPSI 456 (595)
T ss_dssp SCEEEEEEEESSCCCCEEEECTTT
T ss_pred cEEEEEEEcCCCCCCceEEccHHH
Confidence 6554432 3444556666543
No 403
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.09 E-value=4.7e-08 Score=102.61 Aligned_cols=235 Identities=9% Similarity=0.014 Sum_probs=141.1
Q ss_pred CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCE
Q 005140 254 PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 333 (712)
Q Consensus 254 ~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ 333 (712)
.....|+|+|+|+.+++...+ +.|++||..++.......... . +.++|++ ++++
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~----------~~I~~id~~~g~~~~~~~~~~-~--------------~~ia~~~-~g~~ 184 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDD----------PRVRLISVDDNKVTTVHPGFK-G--------------GKPAVTK-DKQR 184 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTT----------TEEEEEETTTTEEEEEEETCC-B--------------CBCEECT-TSSE
T ss_pred CCceEEEEeCCCCEEEEecCC----------CcEEEEECCCCEEEEeeccCC-C--------------CceeEec-CCCc
Confidence 357899999999977777666 789999987776554433311 1 1478999 9998
Q ss_pred EEEec-CC--eEEEEEcCCceecccc----cccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceee--
Q 005140 334 FAKLG-KN--MISVYETESFTLIDKK----SLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ-- 404 (712)
Q Consensus 334 la~~~-d~--~i~iwd~~~~~~~~~~----~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~-- 404 (712)
|+.+. ++ .|.+|+...+...... ......+.+++++|++..|.+ .+...+|+.++.........
T Consensus 185 l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-------~d~~~~I~~~d~~~~~~~~~~~ 257 (409)
T 3hrp_A 185 VYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYF-------VDSNKNFGRFNVKTQEVTLIKQ 257 (409)
T ss_dssp EEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEE-------ECTTCEEEEEETTTCCEEEEEE
T ss_pred EEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEE-------EECCCcEEEEECCCCCEEEEec
Confidence 87776 44 7888887654332111 113345789999996555555 22345788888765542111
Q ss_pred --eeeeeecc-e-eEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCC---------------CCc
Q 005140 405 --KNLFSVSD-C-KMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNK---------------NDK 465 (712)
Q Consensus 405 --~~~~~~~~-~-~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h---------------~~~ 465 (712)
........ . .++|+|++..|++...... .++.+...+. . ..+.++ -..
T Consensus 258 ~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~----------~I~~~~~~g~-~--~~~~g~~~~~g~~dg~~~~~~~~~ 324 (409)
T 3hrp_A 258 LELSGSLGTNPGPYLIYYFVDSNFYMSDQNLS----------SVYKITPDGE-C--EWFCGSATQKTVQDGLREEALFAQ 324 (409)
T ss_dssp CCCCSCCCCSSCCEEEEETTTTEEEEEETTTT----------EEEEECTTCC-E--EEEEECTTCCSCBCEEGGGCBCSS
T ss_pred ccccCCCCCCccccEEEeCCCCEEEEEeCCCC----------EEEEEecCCC-E--EEEEeCCCCCCcCCCcccccEeCC
Confidence 00011111 3 7889997666666544322 3444443332 1 111121 134
Q ss_pred eEEEEEeeCCCEEEEEE-cCCCCCeEEEEEeecccccCceeEEEEeC--------------CCceeEEEEccCCCeEEEE
Q 005140 466 IIAFAWEPKGHRFAVIH-GDSPRPDISFYSMRTAQHAGRVSKLTTLK--------------GKQANALFWSPSGRFIVLA 530 (712)
Q Consensus 466 v~~~~~sp~g~~l~~~~-~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--------------~~~v~~l~~spdg~~l~~~ 530 (712)
...++++|+|+.+++-. .+. .|+.|++.++. +..+.... -.....++++|+|.++++-
T Consensus 325 P~gia~d~dG~lyvad~~~~~---~I~~~~~~~G~----v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad 397 (409)
T 3hrp_A 325 PNGMTVDEDGNFYIVDGFKGY---CLRKLDILDGY----VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAE 397 (409)
T ss_dssp EEEEEECTTCCEEEEETTTTC---EEEEEETTTTE----EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEE
T ss_pred CeEEEEeCCCCEEEEeCCCCC---EEEEEECCCCE----EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEE
Confidence 78899999999555544 444 89999964432 11221110 0235789999998666665
Q ss_pred eccCCCceEEEEEC
Q 005140 531 GLKGFNGQLEFYNV 544 (712)
Q Consensus 531 ~~~~~dg~v~iwd~ 544 (712)
.. ++.|+.+++
T Consensus 398 ~~---n~~Ir~i~~ 408 (409)
T 3hrp_A 398 AW---GKAIRKYAV 408 (409)
T ss_dssp ST---TCEEEEEEE
T ss_pred CC---CCeEEEEEe
Confidence 54 677877764
No 404
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.08 E-value=2.7e-10 Score=113.57 Aligned_cols=79 Identities=23% Similarity=0.314 Sum_probs=71.7
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+++|||+|||. ...+++|+++|++||.|.. +.++.|+.+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 94 ~~~~l~v~nlp~------~~t~~~l~~~f~~~G~i~~--~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 165 (284)
T 3smz_A 94 TDALLCVANLPP------SLTQQQFEELVRPFGSLER--CFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPR 165 (284)
T ss_dssp CSCEEEEESCCT------TCCHHHHHHHHGGGSCEEE--EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEcCCCC------cCCHHHHHHHHHhcCCeeE--EEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 457999999997 4458999999999999999 99999999999999999999999999999999999999885
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 166 -~i~v~~a 172 (284)
T 3smz_A 166 -TLYVHWT 172 (284)
T ss_dssp -ECEEEEC
T ss_pred -EEEEEEC
Confidence 7777664
No 405
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.07 E-value=2.6e-07 Score=94.82 Aligned_cols=248 Identities=12% Similarity=0.098 Sum_probs=141.2
Q ss_pred EEEec--CCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC----ceeeeccCCCcccccCCCCCcCCCCcC-eEEecCCC
Q 005140 258 LIDFS--PGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG----KVMRDFKGSADEFAVGGTGGVAGVSWP-VFRWGGGK 330 (712)
Q Consensus 258 ~i~~S--pdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~d 330 (712)
+..++ +++++|+..+... +.|.|+|+.+. +..+++....-.. ..+..+| .+..+| +
T Consensus 86 ~~~~~~~~~r~~l~v~~l~s---------~~I~viD~~t~p~~p~~~k~ie~~~~~~-------~~g~s~Ph~~~~~p-d 148 (462)
T 2ece_A 86 CPNGKPNIERRFLIVPGLRS---------SRIYIIDTKPNPREPKIIKVIEPEEVKK-------VSGYSRLHTVHCGP-D 148 (462)
T ss_dssp STTCCTTCCSCEEEEEBTTT---------CCEEEEECCSCTTSCEEEEEECHHHHHH-------HHCEEEEEEEEECS-S
T ss_pred ccccCCCccCCEEEEccCCC---------CeEEEEECCCCCCCceeeeeechhhccc-------ccCCCcccceeECC-C
Confidence 33457 8899988776552 68999998755 4555552000000 0000011 367789 9
Q ss_pred CCEEEEec-C------CeEEEEEcCCceeccccccccc--C-eeeEEECCCCCeEEEEee------cCCC--C----CCC
Q 005140 331 DKYFAKLG-K------NMISVYETESFTLIDKKSLKVE--N-VMDFSWSPTDPIISLFVP------ELGG--G----NQP 388 (712)
Q Consensus 331 g~~la~~~-d------~~i~iwd~~~~~~~~~~~~~~~--~-v~~~~~sp~~~~la~~~~------~~~~--~----~~~ 388 (712)
| +++++. + +.|.++|..+++++........ . -.++.|+|+++.+++..- ..|- . ...
T Consensus 149 G-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~ 227 (462)
T 2ece_A 149 A-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYG 227 (462)
T ss_dssp C-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSC
T ss_pred e-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccC
Confidence 9 555444 4 7899999999988765532211 1 346889999998876200 0000 0 124
Q ss_pred eEEEEEecCCccceeeeeee----eecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcc-eeEEEecCC-
Q 005140 389 ARVSLVQIPSKEELRQKNLF----SVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIP-IEVLELDNK- 462 (712)
Q Consensus 389 ~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~l~~h- 462 (712)
-+|.+|+..+.+.+....+. ....+.+.++|+|++++++..-.. ....+.+.+|........ ...+.+...
T Consensus 228 d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~---~~Lss~V~v~~~d~g~~~~~~vIdi~~~~ 304 (462)
T 2ece_A 228 NRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSL---KDLSSSIWLWFYEDGKWNAEKVIEIPAEP 304 (462)
T ss_dssp CEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEET---TTCCEEEEEEEEETTEEEEEEEEEECCEE
T ss_pred CEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeec---cCCCceEEEEEecCCceeEEEEEeCCCcc
Confidence 57888888776655554442 112223456999998888765000 000112333333321000 001111110
Q ss_pred ---------------CCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC--------------
Q 005140 463 ---------------NDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK-------------- 513 (712)
Q Consensus 463 ---------------~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~-------------- 513 (712)
...+..+.+||||++|.++.... +.|.+|++.... +.+.+..+..+
T Consensus 305 v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~--d~VavfdV~d~~---~~~lv~~I~tGG~~~~~~~~~G~~~ 379 (462)
T 2ece_A 305 LEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGI--GEVRQYDISNPF---KPVLTGKVKLGGIFHRADHPAGHKL 379 (462)
T ss_dssp CCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTT--TEEEEEECSSTT---SCEEEEEEECBTTTTCBCCTTSCCC
T ss_pred ccccccccccccccCCCceeEEEECCCCCEEEEEeCCC--CEEEEEEecCCC---CcEEEEEEEeCCeeccccccccccC
Confidence 23467899999999999887743 289999986321 12344444322
Q ss_pred --ceeEEEEccCCCeEEEEe
Q 005140 514 --QANALFWSPSGRFIVLAG 531 (712)
Q Consensus 514 --~v~~l~~spdg~~l~~~~ 531 (712)
.-..+.+||||++|+++.
T Consensus 380 ~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 380 TGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CSCCCCEEECTTSSEEEEEC
T ss_pred CCCCCEEEEcCCCCEEEEEc
Confidence 247799999999999987
No 406
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.07 E-value=1.2e-10 Score=109.06 Aligned_cols=69 Identities=17% Similarity=0.228 Sum_probs=61.7
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCee--eeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVI--KEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v--~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
+++|||.|||. ...+++|+++|++||.| .+ +.+..|+ |..+|||||+|.+.++|.+|+..|||+.+++
T Consensus 123 ~~~l~v~NLp~------~~t~~~L~~~F~~~G~v~~~~--v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g 192 (205)
T 3tyt_A 123 SNVLHFFNAPL------EVTEENFFEICDELGVKRPTS--VKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKN 192 (205)
T ss_dssp CSEEEEEEECT------TCCHHHHHHHHHHHTCCCCSE--EEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECC
T ss_pred cceEEEeCCCC------CCCHHHHHHHHHhcCCcceEE--EEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccC
Confidence 57899999997 44589999999999998 77 8888876 5677999999999999999999999999977
Q ss_pred c
Q 005140 137 A 137 (712)
Q Consensus 137 ~ 137 (712)
+
T Consensus 193 ~ 193 (205)
T 3tyt_A 193 P 193 (205)
T ss_dssp S
T ss_pred C
Confidence 5
No 407
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.07 E-value=4.5e-08 Score=98.56 Aligned_cols=228 Identities=7% Similarity=0.024 Sum_probs=133.1
Q ss_pred cceEEEcCCCcEEEEEe-cCc-eEEeecccCcceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc
Q 005140 216 ESFVQWSPLGTYLATVH-RQG-AAVWGGANTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR 293 (712)
Q Consensus 216 v~~v~~Spdg~~lat~~-~~~-i~iw~~~~~~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~ 293 (712)
...+.|+|+|+.|+..+ .++ +..|+.. ............+..++++|+|+.+++.... +.|.+|+..
T Consensus 47 ~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~----------~~v~~~~~~ 115 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTVDVLLDATAFTNGNAVDAQQRLVHCEHGR----------RAITRSDAD 115 (305)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEETT-SCEEEEEESCSCEEEEEECTTSCEEEEETTT----------TEEEEECTT
T ss_pred ccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCEEEEeCCCCccceeeECCCCCEEEEECCC----------CEEEEECCC
Confidence 45789999999555444 444 7788876 3333333344458999999999977766665 679999974
Q ss_pred CCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEE----ec--------------CCeEEEEEcCCceeccc
Q 005140 294 TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAK----LG--------------KNMISVYETESFTLIDK 355 (712)
Q Consensus 294 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~----~~--------------d~~i~iwd~~~~~~~~~ 355 (712)
|+. ..+....... .... ...+.+++ +|+++++ +. .+.|..|+..+++....
T Consensus 116 -g~~-~~~~~~~~~~------~~~~--~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~ 184 (305)
T 3dr2_A 116 -GQA-HLLVGRYAGK------RLNS--PNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM 184 (305)
T ss_dssp -SCE-EEEECEETTE------ECSC--CCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE
T ss_pred -CCE-EEEEeccCCC------ccCC--CCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE
Confidence 653 2222111000 0000 11588999 9998886 22 24567777655554322
Q ss_pred ccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeee----eecceeEEECcCCCEEEEEEccc
Q 005140 356 KSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLF----SVSDCKMYWQSSGDYLAVKVDRY 431 (712)
Q Consensus 356 ~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~g~~l~~~~~~~ 431 (712)
. .......++|+|+++.|.+..... .......|+.|++.... +.....+ ......+.+.++|+.. ++..+
T Consensus 185 -~-~~~~p~gl~~spdg~~lyv~~~~~-~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lw-v~~~~- 258 (305)
T 3dr2_A 185 -A-DLDHPNGLAFSPDEQTLYVSQTPE-QGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLW-SSSGT- 258 (305)
T ss_dssp -E-EESSEEEEEECTTSSEEEEEECCC----CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEE-ECCSS-
T ss_pred -e-cCCCCcceEEcCCCCEEEEEecCC-cCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEE-EecCC-
Confidence 2 444578899999999776621100 00012567777765433 2211111 1122346778888843 33321
Q ss_pred ccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCC
Q 005140 432 TKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDS 485 (712)
Q Consensus 432 ~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~ 485 (712)
.|+.+...+.....+.+ ...+.+++|+|+++.|.+++.++
T Consensus 259 -----------gv~~~~~~g~~~~~~~~---~~~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 259 -----------GVCVFDSDGQLLGHIPT---PGTASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp -----------EEEEECTTSCEEEEEEC---SSCCCEEEECTTSCEEEEEETTE
T ss_pred -----------cEEEECCCCCEEEEEEC---CCceeEEEEeCCCCEEEEEcCCe
Confidence 24444444554444555 23588999999999888888754
No 408
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.07 E-value=3.5e-10 Score=112.59 Aligned_cols=80 Identities=20% Similarity=0.323 Sum_probs=66.2
Q ss_pred CCCEEEECCCCC-CCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 58 FGNIIVVDNLPV-VPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 58 ~~~~~~v~~lp~-~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
-+++|||+|||. +++ +.|+..|.++|++||.|.+ |.++. +|++||||||+|.+.++|.+|++.|||..+.+
T Consensus 8 ~~~~l~V~nlp~~~~~---~~l~~~L~~~F~~~G~i~~--v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 79 (282)
T 3pgw_A 8 PNHTIYINNLNEKIKK---DELKKSLYAIFSQFGQILD--ILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYD 79 (282)
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHHHHhccCCeEE--EEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCC
Confidence 467999999996 332 2333335599999999999 88886 78999999999999999999999999999988
Q ss_pred ceEEEEEeec
Q 005140 137 AHIFAVNMFD 146 (712)
Q Consensus 137 ~~~l~v~~~~ 146 (712)
+ .+.|....
T Consensus 80 ~-~l~v~~a~ 88 (282)
T 3pgw_A 80 K-PMRIQYAK 88 (282)
T ss_pred c-EEEEEEec
Confidence 5 77777643
No 409
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.07 E-value=2.4e-10 Score=113.93 Aligned_cols=80 Identities=19% Similarity=0.244 Sum_probs=71.5
Q ss_pred CCCCEEEECCCCCCCchhhhh-hHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 005140 57 GFGNIIVVDNLPVVPKEKFEK-LEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~~-~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 135 (712)
...++|||.|||. .. .+++|+++|++||.|.. +.++.|+ +|+++|||||+|.+.++|.+|+..|||..++
T Consensus 182 ~~~~~l~v~nlp~------~~~~~~~l~~~f~~~G~i~~--v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 252 (284)
T 3smz_A 182 LHSRCLCVDRLPP------GFNDVDALCRALSAVHSPTF--CQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLG 252 (284)
T ss_dssp TSCSEEEEECCCT------TCCCHHHHHHHTCSSSCCSE--EEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCccEEEEecCCc------ccCCHHHHHHHhhCCCCeEE--EEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Confidence 3568999999997 32 38899999999999999 9999998 8999999999999999999999999999998
Q ss_pred CceEEEEEeec
Q 005140 136 RAHIFAVNMFD 146 (712)
Q Consensus 136 ~~~~l~v~~~~ 146 (712)
++ .+.|....
T Consensus 253 g~-~l~v~~a~ 262 (284)
T 3smz_A 253 GS-HLRVSFCA 262 (284)
T ss_dssp TE-ECEEEECC
T ss_pred Ce-EEEEEEec
Confidence 85 77777654
No 410
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.06 E-value=2.2e-10 Score=105.06 Aligned_cols=74 Identities=19% Similarity=0.336 Sum_probs=64.4
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. ...+++|+++|++||.|.. + ..+|+++|||||+|.+.++|.+|++.|||..++++
T Consensus 98 ~~~~l~v~nlp~------~~t~~~l~~~F~~~g~v~~--~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 164 (175)
T 1fje_B 98 AARTLLAKNLSF------NITEDELKEVFEDALEIRL--V-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 164 (175)
T ss_dssp GGGEEEEESCCS------SCCHHHHHHHCTTCSEEEE--E-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTE
T ss_pred cCCEEEEeCCCC------CCCHHHHHHHHHhcCeEEE--e-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 457999999997 4448999999999999766 4 45899999999999999999999999999999985
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 165 -~i~v~~a 171 (175)
T 1fje_B 165 -SVSLYYT 171 (175)
T ss_dssp -EEEEEEC
T ss_pred -EEEEEec
Confidence 7777654
No 411
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.05 E-value=3e-10 Score=113.14 Aligned_cols=80 Identities=23% Similarity=0.265 Sum_probs=62.9
Q ss_pred ccccCCCCEEEECCC--CCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 005140 53 EVESGFGNIIVVDNL--PVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTN 130 (712)
Q Consensus 53 ~~~~~~~~~~~v~~l--p~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~ 130 (712)
...+.-+++|||+|+ +. ...+++|+++|++||+|.+ |.|+. +||||||+|++.++|++|++.||
T Consensus 12 ~~~~~ps~~l~VgN~gl~~------~~te~~L~~~F~~~G~V~~--v~~~~------~kgfaFV~f~~~~~A~~Ai~~ln 77 (345)
T 3tht_A 12 ETVSYATQSLVVANGGLGN------GVSRNQLLPVLEKCGLVDA--LLMPP------NKPYSFARYRTTEESKRAYVTLN 77 (345)
T ss_dssp CCCSSCCSEEEEETCSGGG------TCCHHHHHHHHHTTSCEEE--EECCT------TCSEEEEEESSHHHHHHHHHHTT
T ss_pred eecCCCCCEEEEEcCCCCC------CCCHHHHHHHHHhcCCeEE--EEEeC------CCCEEEEEECCHHHHHHHHHHhC
Confidence 334445679999995 54 4448999999999999998 88864 57999999999999999999999
Q ss_pred CCccC---Cc-eEEEEEeec
Q 005140 131 GYKLD---RA-HIFAVNMFD 146 (712)
Q Consensus 131 ~~~~~---~~-~~l~v~~~~ 146 (712)
|..+. ++ .++.++...
T Consensus 78 G~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 78 GKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp TCEEECTTSCEEECEEEECS
T ss_pred CCccccccCCceEEEEEEee
Confidence 98873 22 245565543
No 412
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.05 E-value=2.2e-10 Score=114.70 Aligned_cols=80 Identities=23% Similarity=0.310 Sum_probs=69.5
Q ss_pred CCCCEEEECCCCCCCchhhh-hhHHHHHHHhhccCeeeeceEEEeccCC-CCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Q 005140 57 GFGNIIVVDNLPVVPKEKFE-KLEGVIRKIYSQIGVIKEDGLWMPVDPE-TQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134 (712)
Q Consensus 57 ~~~~~~~v~~lp~~~~~~~~-~~~~~l~~~f~~~g~v~~~~~~~~~d~~-~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~ 134 (712)
.-.++|||.|||. . ..+++|+++|++||.|.. +.++.|+. ||+++|||||+|.+.++|.+|+ .|||..+
T Consensus 208 ~~~~~l~v~nlp~------~~~t~~~l~~~F~~~G~v~~--v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~ 278 (292)
T 2ghp_A 208 LEGREIMIRNLST------ELLDENLLRESFEGFGSIEK--INIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLL 278 (292)
T ss_dssp CTTTEEEEEEECT------TTCCHHHHHHHHGGGSCEEE--EECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEE
T ss_pred CCCceEEEECCCc------ccCCHHHHHHHHhccCCeeE--EEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 3568999999997 4 448899999999999999 99999986 5999999999999999999999 9999999
Q ss_pred CCceEEEEEeec
Q 005140 135 DRAHIFAVNMFD 146 (712)
Q Consensus 135 ~~~~~l~v~~~~ 146 (712)
+++ .+.|....
T Consensus 279 ~g~-~i~V~~a~ 289 (292)
T 2ghp_A 279 GNR-EISVSLAD 289 (292)
T ss_dssp TTE-EEEEEECC
T ss_pred CCc-EEEEEEec
Confidence 985 78877643
No 413
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.05 E-value=5e-08 Score=98.21 Aligned_cols=232 Identities=8% Similarity=0.066 Sum_probs=134.6
Q ss_pred eEEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc
Q 005140 323 VFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE 400 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~ 400 (712)
.+.|++ +|+.|+..+ ++.|..|+.. +.. .........+..++++|+|+++++ ......|..++.. .+
T Consensus 49 gp~~~~-~g~~l~~~d~~~~~i~~~~~~-g~~-~~~~~~~~~~~gl~~d~dG~l~v~-------~~~~~~v~~~~~~-g~ 117 (305)
T 3dr2_A 49 GPAWWE-AQRTLVWSDLVGRRVLGWRED-GTV-DVLLDATAFTNGNAVDAQQRLVHC-------EHGRRAITRSDAD-GQ 117 (305)
T ss_dssp EEEEEG-GGTEEEEEETTTTEEEEEETT-SCE-EEEEESCSCEEEEEECTTSCEEEE-------ETTTTEEEEECTT-SC
T ss_pred CCeEeC-CCCEEEEEECCCCEEEEEeCC-CCE-EEEeCCCCccceeeECCCCCEEEE-------ECCCCEEEEECCC-CC
Confidence 579999 999544444 8899999874 432 222233445889999999997765 2333467777654 22
Q ss_pred c--eeeee-e-eeecceeEEECcCCCEEEEEEcccccc------cccccccEEEEEEecCCcceeEEEecCCCCceEEEE
Q 005140 401 E--LRQKN-L-FSVSDCKMYWQSSGDYLAVKVDRYTKT------KKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFA 470 (712)
Q Consensus 401 ~--~~~~~-~-~~~~~~~~~~s~~g~~l~~~~~~~~~~------~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~ 470 (712)
. +.... . .......+.++++|...++-..-++.. .........||.+.........+. +......++
T Consensus 118 ~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~~~p~gl~ 194 (305)
T 3dr2_A 118 AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---DLDHPNGLA 194 (305)
T ss_dssp EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---EESSEEEEE
T ss_pred EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---cCCCCcceE
Confidence 1 11100 0 011233468899998766421101000 000011246777765332222222 234567899
Q ss_pred EeeCCCEEEEEEcCC---CCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcc
Q 005140 471 WEPKGHRFAVIHGDS---PRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDEL 547 (712)
Q Consensus 471 ~sp~g~~l~~~~~d~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~ 547 (712)
|+|+++.|+++.... ....|.+|++.... ......+..........++++++|++.+ ++. +| |.+|+.+ +
T Consensus 195 ~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~---~g-v~~~~~~-g 267 (305)
T 3dr2_A 195 FSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWS-SSG---TG-VCVFDSD-G 267 (305)
T ss_dssp ECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEE-CCS---SE-EEEECTT-S
T ss_pred EcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEE-ecC---Cc-EEEECCC-C
Confidence 999999888876641 01279999986432 1011122222233457799999999444 443 44 9999986 4
Q ss_pred eeeeec-cccceeeEEECCCCCEEEEEEc
Q 005140 548 ETMATA-EHFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 548 ~~~~~~-~~~~v~~~~~spdg~~l~t~s~ 575 (712)
+.+... ....+++++|+|+++.|..++.
T Consensus 268 ~~~~~~~~~~~~~~~~f~~d~~~L~it~~ 296 (305)
T 3dr2_A 268 QLLGHIPTPGTASNCTFDQAQQRLFITGG 296 (305)
T ss_dssp CEEEEEECSSCCCEEEECTTSCEEEEEET
T ss_pred CEEEEEECCCceeEEEEeCCCCEEEEEcC
Confidence 444432 2235889999999998888887
No 414
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.05 E-value=3e-10 Score=111.30 Aligned_cols=81 Identities=22% Similarity=0.319 Sum_probs=68.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCC-CccC-
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNG-YKLD- 135 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~-~~~~- 135 (712)
-+++|||+|||. ...+.+|+++|++||.|.. +.++.|+ +|+++|||||+|.+.++|.+|+..||+ ..+.
T Consensus 95 ~~~~l~v~nl~~------~~t~~~l~~~F~~~G~i~~--v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~ 165 (261)
T 3sde_A 95 HGAALTVKNLSP------VVSNELLEQAFSQFGPVEK--AVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLT 165 (261)
T ss_dssp CSSEEEEESCCT------TCCHHHHHHHHGGGSCEEE--EEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESS
T ss_pred cCCcccccCCCC------CCCHHHHHHHHHhcCCeEE--EEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEec
Confidence 367999999997 4448899999999999999 9999996 999999999999999999999999954 4432
Q ss_pred --CceEEEEEeeccc
Q 005140 136 --RAHIFAVNMFDDF 148 (712)
Q Consensus 136 --~~~~l~v~~~~~~ 148 (712)
+ +.+.|......
T Consensus 166 ~~~-r~i~v~~~~~~ 179 (261)
T 3sde_A 166 TTP-RPVIVEPMEQF 179 (261)
T ss_dssp SSC-CBCEEEECCCE
T ss_pred CCC-ceEEEeecccc
Confidence 4 47777765543
No 415
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.02 E-value=6.7e-10 Score=106.52 Aligned_cols=77 Identities=14% Similarity=0.210 Sum_probs=66.9
Q ss_pred cCCCCEEEECCCCC-CCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Q 005140 56 SGFGNIIVVDNLPV-VPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134 (712)
Q Consensus 56 ~~~~~~~~v~~lp~-~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~ 134 (712)
..-+++|||+|||. -.. +++|+++|++||.|.+ |.++.|+ +|||||+|.+.++|.+|++.|||..+
T Consensus 31 ~~~~~~l~V~nLp~~~~t------e~~L~~~F~~~G~i~~--v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~ 97 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVT------PQSLFILFGVYGDVQR--VKILFNK-----KENALVQMADGNQAQLAMSHLNGHKL 97 (229)
T ss_dssp CCCCSEEEEESCCTTTCC------HHHHHHHHHHHTCEEE--EEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBC
T ss_pred CCCCCEEEEeCCCcccCC------HHHHHHHHHhCCCeEE--EEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeE
Confidence 34568999999996 333 7889999999999999 9999885 89999999999999999999999999
Q ss_pred CCceEEEEEeec
Q 005140 135 DRAHIFAVNMFD 146 (712)
Q Consensus 135 ~~~~~l~v~~~~ 146 (712)
.++ .+.|....
T Consensus 98 ~g~-~l~v~~a~ 108 (229)
T 2adc_A 98 HGK-PIRITLSK 108 (229)
T ss_dssp SSS-BCEEECCS
T ss_pred CCe-EEEEEEec
Confidence 885 77776543
No 416
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.01 E-value=6.5e-09 Score=106.57 Aligned_cols=166 Identities=9% Similarity=0.034 Sum_probs=118.4
Q ss_pred eeEEECcCCCEEEEEEcccccccccccccEEEEEEecCC----------cceeEEEecCCCCceEEEEEeeCCCEEEEEE
Q 005140 413 CKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERD----------IPIEVLELDNKNDKIIAFAWEPKGHRFAVIH 482 (712)
Q Consensus 413 ~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~----------~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~ 482 (712)
..+++++....+++++.++ +.+|++..-. .+..... +.. |+.++| ++++|+++
T Consensus 41 nlLais~~~gll~a~~~~~----------l~v~~~~~l~~~~~~~~~~~~~~~~~~---lp~-V~~l~f--d~~~L~v~- 103 (388)
T 1xip_A 41 QNLDISNSKSLFVAASGSK----------AVVGELQLLRDHITSDSTPLTFKWEKE---IPD-VIFVCF--HGDQVLVS- 103 (388)
T ss_dssp BCEEEETTTTEEEEEETTE----------EEEEEHHHHHHHHHSSSCCCCCSEEEE---CTT-EEEEEE--ETTEEEEE-
T ss_pred cEEEEcCCCCEEEEeCCCE----------EEEEEhhHhhhhhccccccccceEEee---CCC-eeEEEE--CCCEEEEE-
Confidence 3467888888888888764 3566654211 1112233 356 999999 99999998
Q ss_pred cCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEE
Q 005140 483 GDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVE 562 (712)
Q Consensus 483 ~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~ 562 (712)
.++ .|++||+.+... ......+ ..++.++.+.+.. ++++.. ||.|.+||+.++.... ....|++++
T Consensus 104 ~~~---~l~v~dv~sl~~---~~~~~~~-~~~v~~i~~~~p~--~av~~~---dG~L~v~dl~~~~~~~--~~~~Vs~v~ 169 (388)
T 1xip_A 104 TRN---ALYSLDLEELSE---FRTVTSF-EKPVFQLKNVNNT--LVILNS---VNDLSALDLRTKSTKQ--LAQNVTSFD 169 (388)
T ss_dssp ESS---EEEEEESSSTTC---EEEEEEC-SSCEEEEEECSSE--EEEEET---TSEEEEEETTTCCEEE--EEESEEEEE
T ss_pred cCC---cEEEEEchhhhc---cCcccee-ecceeeEEecCCC--EEEEEC---CCCEEEEEccCCcccc--ccCCceEEE
Confidence 666 899999976442 2233333 3356777766543 777776 9999999999776653 446899999
Q ss_pred ECCCCCEEEEEEccceeccccEEEEEecCcee---eee-----------cccceeeeEEecCCCCCCC
Q 005140 563 WDPTGRYVATAVTSVHEMENGFNIWSFNGKLL---YRT-----------LKDHFFQFLWRPRPPSFLT 616 (712)
Q Consensus 563 ~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~---~~~-----------~~~~i~~~~w~p~~~~l~s 616 (712)
|||+| ++.+.. ||.+++|+..+..+ ... +...+.++.|.+++.++++
T Consensus 170 WSpkG--~~vg~~-----dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 170 VTNSQ--LAVLLK-----DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp ECSSE--EEEEET-----TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EcCCc--eEEEEc-----CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 99999 677888 89999999987664 222 3467999999999887765
No 417
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.99 E-value=1.1e-07 Score=99.79 Aligned_cols=233 Identities=9% Similarity=0.023 Sum_probs=138.8
Q ss_pred eEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccc
Q 005140 323 VFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE 401 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~ 401 (712)
.++|++ +++++++.. ++.|++|+..++.+...... ..... ++|+|++..|++ +..++...|+.++......
T Consensus 135 ~la~d~-~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~-----~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 135 GIAAVG-NNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYS-----IGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp EEEECS-TTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEE-----EBSSTTCEEEEEEGGGTTC
T ss_pred EEEEeC-CCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEE-----EecCCCceEEEEEcCCCce
Confidence 588999 999777766 79999999987665432211 22234 999999998776 3233333788888765433
Q ss_pred eeee----eeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEE---ecCCCCce--EEEEEe
Q 005140 402 LRQK----NLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLE---LDNKNDKI--IAFAWE 472 (712)
Q Consensus 402 ~~~~----~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~---l~~h~~~v--~~~~~s 472 (712)
.... .........++++|++..|++...++ .++.+.........+. ..++.... ..++|+
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~-----------~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~ 275 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNK-----------NFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYY 275 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTC-----------EEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEE
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCC-----------cEEEEECCCCCEEEEecccccCCCCCCccccEEEe
Confidence 2221 10112334567899666666633222 3555544332222221 11222222 389999
Q ss_pred eCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--------------CCceeEEEEccCCCeEEEEe-ccCCCc
Q 005140 473 PKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--------------GKQANALFWSPSGRFIVLAG-LKGFNG 537 (712)
Q Consensus 473 p~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--------------~~~v~~l~~spdg~~l~~~~-~~~~dg 537 (712)
|++..|+++.... ..|+.|+.... ...+.... -.....++++|+|+++++-. . ++
T Consensus 276 p~~g~lyv~d~~~--~~I~~~~~~g~-----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~---~~ 345 (409)
T 3hrp_A 276 FVDSNFYMSDQNL--SSVYKITPDGE-----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK---GY 345 (409)
T ss_dssp TTTTEEEEEETTT--TEEEEECTTCC-----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT---TC
T ss_pred CCCCEEEEEeCCC--CEEEEEecCCC-----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC---CC
Confidence 9766666655432 27888886432 11121111 12357899999999666655 4 78
Q ss_pred eEEEEECCcceeeeec-c---------------ccceeeEEECCCCCEEEEEEccceeccccEEEEEe
Q 005140 538 QLEFYNVDELETMATA-E---------------HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSF 589 (712)
Q Consensus 538 ~v~iwd~~~~~~~~~~-~---------------~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~ 589 (712)
.|+.|++.++.+.... + -.....++++|+|..+++-.. ++.|+.+++
T Consensus 346 ~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~-----n~~Ir~i~~ 408 (409)
T 3hrp_A 346 CLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAW-----GKAIRKYAV 408 (409)
T ss_dssp EEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEEST-----TCEEEEEEE
T ss_pred EEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECC-----CCeEEEEEe
Confidence 9999997766654321 1 135778999999876666655 677776654
No 418
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.99 E-value=1.9e-10 Score=105.53 Aligned_cols=78 Identities=14% Similarity=0.161 Sum_probs=65.6
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+++|||+|||. +..+++|+++|++||.+.. .++.|..+|+++|||||+|.++++|.+|+ .|||..+.++
T Consensus 12 ~~~~l~V~nLp~------~~t~~~l~~~f~~~g~~~~---~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 81 (175)
T 1fje_B 12 TPFNLFIGNLNP------NKSVAELKVAISELFAKND---LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGN 81 (175)
T ss_dssp SSEEEEEECCCT------TSCHHHHHHHHHHHHHHHT---CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTE
T ss_pred CCcEEEEeCCCC------CCCHHHHHHHHHHhCCcce---EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCe
Confidence 467999999997 4558899999999998755 34556568999999999999999999999 5999999985
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 82 -~l~v~~~~ 89 (175)
T 1fje_B 82 -EIKLEKPK 89 (175)
T ss_dssp -EEEEECCC
T ss_pred -EEEEecCC
Confidence 78777643
No 419
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.98 E-value=5e-07 Score=91.79 Aligned_cols=230 Identities=9% Similarity=0.019 Sum_probs=136.4
Q ss_pred eeEEEecCCCCEEE-EEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEE
Q 005140 256 VKLIDFSPGEKYLV-TYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYF 334 (712)
Q Consensus 256 v~~i~~Spdg~~l~-t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~l 334 (712)
..++.|+|++..|+ +.... +.|.+||..+++. +.+....... ++.|++ +|+++
T Consensus 51 ~egp~~~~~~~~l~~~d~~~----------~~i~~~d~~~~~~-~~~~~~~~v~--------------~i~~~~-dg~l~ 104 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILE----------RELHELHLASGRK-TVHALPFMGS--------------ALAKIS-DSKQL 104 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGG----------TEEEEEETTTTEE-EEEECSSCEE--------------EEEEEE-TTEEE
T ss_pred CcCCeEeCCCCEEEEEECCC----------CEEEEEECCCCcE-EEEECCCcce--------------EEEEeC-CCeEE
Confidence 46789999865554 44445 7899999877653 3333222221 688999 99988
Q ss_pred EEecCCeEEEEEcCCceecccccc----cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeee
Q 005140 335 AKLGKNMISVYETESFTLIDKKSL----KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV 410 (712)
Q Consensus 335 a~~~d~~i~iwd~~~~~~~~~~~~----~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 410 (712)
++.. +.|.+|+..++........ ....+.++.++|+|++++..... ........|+.++ ..+. ........
T Consensus 105 v~~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~-~~~~~~~~l~~~~--~g~~-~~~~~~~~ 179 (326)
T 2ghs_A 105 IASD-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGR-KAETGAGSIYHVA--KGKV-TKLFADIS 179 (326)
T ss_dssp EEET-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEET-TCCTTCEEEEEEE--TTEE-EEEEEEES
T ss_pred EEEC-CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCC-cCCCCceEEEEEe--CCcE-EEeeCCCc
Confidence 8664 4599999877664321111 11247899999999865541110 0012456788887 2221 11111111
Q ss_pred cceeEEECcCCCEEEEEEcccccccccccccEEEEEEe-cCC-cc---eeEEEecCCCCceEEEEEeeCCCEEEEEEcCC
Q 005140 411 SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIK-ERD-IP---IEVLELDNKNDKIIAFAWEPKGHRFAVIHGDS 485 (712)
Q Consensus 411 ~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~-~~~-~~---~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~ 485 (712)
....+.|+|+|+.+++...... .+.+|++. ..+ .. .....+......+..++++++|.++++....+
T Consensus 180 ~~~~i~~s~dg~~lyv~~~~~~--------~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~ 251 (326)
T 2ghs_A 180 IPNSICFSPDGTTGYFVDTKVN--------RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEG 251 (326)
T ss_dssp SEEEEEECTTSCEEEEEETTTC--------EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTT
T ss_pred ccCCeEEcCCCCEEEEEECCCC--------EEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCC
Confidence 2345789999998877654321 24555543 122 11 11122323345678899999998777766666
Q ss_pred CCCeEEEEEeecccccCceeEEEEeCCCceeEEEEc-cCCCeEEEEec
Q 005140 486 PRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWS-PSGRFIVLAGL 532 (712)
Q Consensus 486 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~s-pdg~~l~~~~~ 532 (712)
.|..|+.. +.. .....++...+.+++|+ |+++.|++++.
T Consensus 252 ---~v~~~d~~-g~~----~~~i~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 252 ---AVDRYDTD-GNH----IARYEVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp ---EEEEECTT-CCE----EEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred ---EEEEECCC-CCE----EEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence 79999873 221 11223344468999998 99888776654
No 420
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.97 E-value=6.7e-10 Score=104.07 Aligned_cols=74 Identities=15% Similarity=0.238 Sum_probs=65.0
Q ss_pred CCEEEECCCCC-CCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 59 GNIIVVDNLPV-VPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 59 ~~~~~v~~lp~-~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
+++|||+|||. -.. +++|+++|++||.|.+ +.++.|+ +|||||+|.+.++|.+|++.|||..+.++
T Consensus 3 ~~~l~v~nlp~~~~~------~~~l~~~F~~~G~i~~--v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 69 (198)
T 1qm9_A 3 NSVLLVSNLNPERVT------PQSLFILFGVYGDVQR--VKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGK 69 (198)
T ss_dssp CCEEEEECCCSSSCC------HHHHHHHHHTTCCCSE--EECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSC
T ss_pred CcEEEEeCCCcccCC------HHHHHHHHHhcCCEEE--EEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCe
Confidence 47999999996 443 7889999999999999 9999875 78999999999999999999999999885
Q ss_pred eEEEEEeec
Q 005140 138 HIFAVNMFD 146 (712)
Q Consensus 138 ~~l~v~~~~ 146 (712)
.+.|....
T Consensus 70 -~l~v~~a~ 77 (198)
T 1qm9_A 70 -PIRITLSK 77 (198)
T ss_dssp -CCEEEECC
T ss_pred -EEEEEEec
Confidence 77776543
No 421
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=1.4e-09 Score=87.59 Aligned_cols=60 Identities=20% Similarity=0.322 Sum_probs=50.7
Q ss_pred hhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCceEEEEEee
Q 005140 76 EKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRAHIFAVNMF 145 (712)
Q Consensus 76 ~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~~~l~v~~~ 145 (712)
...+.+|+++|++||.|.+ |.|+ +++||||||+|.+.++|.+|++.+++. .+ +.+.|...
T Consensus 28 ~~te~~L~~~F~~~G~V~~--v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~~--~g-~~l~V~~a 87 (100)
T 2d9o_A 28 GYSKDVLLRLLQKYGEVLN--LVLS-----SKKPGTAVVEFATVKAAELAVQNEVGL--VD-NPLKISWL 87 (100)
T ss_dssp SCCHHHHHHHHHTTSCEEE--EEEE-----SSSSSEEEEEESCHHHHHHHHHTCCBC--SS-SBCEEECS
T ss_pred CCCHHHHHHHHHhcCCEEE--EEEc-----cCCCCEEEEEECCHHHHHHHHHhcCCC--CC-CeEEEEEc
Confidence 4569999999999999999 9998 479999999999999999999986663 44 36776553
No 422
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.95 E-value=1.6e-09 Score=107.82 Aligned_cols=75 Identities=20% Similarity=0.387 Sum_probs=65.2
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-+++|||+|||. ...+++|+++|++||.|.. +.++.++ +|||||+|.+.++|.+|++.|||..+++.
T Consensus 206 ~~~~l~v~nl~~------~~~~~~l~~~F~~~G~i~~--v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g 272 (282)
T 3pgw_A 206 PNHILFLTNLPE------ETNELMLSMLFNQFPGFKE--VRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQN 272 (282)
T ss_pred CCCEEEEeCCCC------cCCHHHHHHHHHhcCCeEE--EEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCC
Confidence 468899999997 5558999999999999999 9998654 68999999999999999999999999833
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
+.+.|...
T Consensus 273 ~~l~v~~a 280 (282)
T 3pgw_A 273 NAMKISFA 280 (282)
T ss_pred CEEEEEEe
Confidence 58887653
No 423
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.94 E-value=1e-09 Score=109.80 Aligned_cols=78 Identities=19% Similarity=0.305 Sum_probs=64.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccC-eeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIG-VIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g-~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
-.++|||+|||. ...+..|+++|++|| .|.. +.++.|+ .|+++|||||+|.+.++|.+|++.|||..+++
T Consensus 116 ~~~~l~v~nlp~------~~t~~~l~~~f~~~G~~i~~--v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 186 (292)
T 2ghp_A 116 TECTLWMTNFPP------SYTQRNIRDLLQDINVVALS--IRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEG 186 (292)
T ss_dssp CSCEEEEECCCT------TCCHHHHHHHHHHTTCCCCE--EECC--------CCEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCC------CCCHHHHHHHHHHhCCCeEE--EEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 578999999997 445889999999999 9999 9999998 58999999999999999999999999999988
Q ss_pred ceEEEEEee
Q 005140 137 AHIFAVNMF 145 (712)
Q Consensus 137 ~~~l~v~~~ 145 (712)
+ .+.|...
T Consensus 187 ~-~l~v~~a 194 (292)
T 2ghp_A 187 Y-TLVTKVS 194 (292)
T ss_dssp E-ECEEEEC
T ss_pred c-EEEEEEC
Confidence 4 7777654
No 424
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.92 E-value=4.6e-08 Score=100.34 Aligned_cols=261 Identities=9% Similarity=0.004 Sum_probs=150.6
Q ss_pred cccceEEEcCCCcEEEEEec--Cc-eEEeecccCcceeeeec---------CCCeeEEEecCCCCEEEEEcC-----CCC
Q 005140 214 WTESFVQWSPLGTYLATVHR--QG-AAVWGGANTFNRLMRYA---------HPQVKLIDFSPGEKYLVTYSS-----HEP 276 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~--~~-i~iw~~~~~~~~~~~~~---------~~~v~~i~~Spdg~~l~t~s~-----d~~ 276 (712)
.....++++|+|+++++... ++ +.||.+. ++. +..++ ...+..++|+|+|+.+++-.. .
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~-~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~-- 92 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT-QDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSV-- 92 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE-TTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSC--
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEEC-CCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCC--
Confidence 45678999999999888642 23 4567665 333 22221 234899999999986665432 3
Q ss_pred CCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEE-EEe----cCCeEEEEEcCCce
Q 005140 277 SNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYF-AKL----GKNMISVYETESFT 351 (712)
Q Consensus 277 ~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~l-a~~----~d~~i~iwd~~~~~ 351 (712)
..|.+||+.+++.++.+..+..... .... ...+++++ ++.++ ++. .++.|.+|++.+++
T Consensus 93 --------~~i~~~d~~tg~~~~~~~~~~~~~~--~~~~-----~~~v~vd~-~~g~~yvtd~~~~~~~~i~v~d~~~g~ 156 (343)
T 2qe8_A 93 --------PKLVAWDTLNNQLSRVIYLPPPITL--SNSF-----VNDLAVDL-IHNFVYISDPAPDDKAALIRVDLQTGL 156 (343)
T ss_dssp --------CEEEEEETTTTEEEEEEECCTTTSC--TTCC-----CCEEEEET-TTTEEEEEECCSGGGCEEEEEETTTCC
T ss_pred --------CeEEEEECCCCeEEEEEECChhhcc--cccc-----cceEEEec-CCCEEEEEcCccCCCCeEEEEECCCCC
Confidence 5799999999987777654321100 0000 12588887 65443 332 46789999998776
Q ss_pred ecccccccccC-eeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcc
Q 005140 352 LIDKKSLKVEN-VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDR 430 (712)
Q Consensus 352 ~~~~~~~~~~~-v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~ 430 (712)
.......+... .....++++|..+.+ ...++....| ......++|+|+|+.|++....
T Consensus 157 ~~r~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~g~~~~~----------------~~~~~gia~s~dg~~ly~~~~~ 215 (343)
T 2qe8_A 157 AARVLQGYPGIAPEDIDLVIDGVPVQI-----GQPDGTVIRP----------------HLGVNGIVLDAENEWLYLSPMH 215 (343)
T ss_dssp EEEECTTCTTTSCCSCCCEETTEECBE-----ECTTSCEECC----------------CCCEEEEEECTTSCEEEEEESS
T ss_pred EEEEecCCCcccccccceeECCEEEEe-----ccCCCceece----------------ecccceeEeccCCCEEEEEeCC
Confidence 54322111110 001334445544443 1222222111 0112346899999998887665
Q ss_pred cccccccccccEEEEEEecC---Ccc------eeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeeccccc
Q 005140 431 YTKTKKSTYTGFELFRIKER---DIP------IEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHA 501 (712)
Q Consensus 431 ~~~~~~~~~~~~~l~~l~~~---~~~------~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~ 501 (712)
.. .+|.+... ... ...+...++.+....++++++|..+++....+ .|.+|+..++.
T Consensus 216 ~~----------~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~---~V~~~d~~~G~-- 280 (343)
T 2qe8_A 216 ST----------SMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHS---AIGVITSADRA-- 280 (343)
T ss_dssp CS----------EEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGT---EEEEEETTTTE--
T ss_pred CC----------eEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCC---eEEEEECCCCC--
Confidence 43 56766531 000 00011112344566799999998877776666 89999973332
Q ss_pred CceeEEEEeC-CCceeEEEEccCCCeEEEEec
Q 005140 502 GRVSKLTTLK-GKQANALFWSPSGRFIVLAGL 532 (712)
Q Consensus 502 ~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~ 532 (712)
...+.... .....+++|+++|+++++.+.
T Consensus 281 --~~~~~~~~~~~~p~~va~~~~g~l~v~~~~ 310 (343)
T 2qe8_A 281 --YKLLVTDEKLSWTDSFNFGSDGYLYFDCNQ 310 (343)
T ss_dssp --EEEEEECGGGSCEEEEEECTTSCEEEEECC
T ss_pred --EEEEEECCceecCCeeEECCCCcEEEEeCc
Confidence 22333322 234688999999987777654
No 425
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.91 E-value=3.4e-07 Score=93.79 Aligned_cols=278 Identities=7% Similarity=0.009 Sum_probs=152.7
Q ss_pred cceeeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeE
Q 005140 245 FNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVF 324 (712)
Q Consensus 245 ~~~~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (712)
.+.+..+. ..+..++++|+|+.+++..... . +.++||.+.+|+ +..+....... .+.-..+. .+
T Consensus 9 ~~~v~~~~-~~p~~va~~~~g~~~v~~~~~~------~--~~~~l~~~~~g~-~~~~p~~~~~~-~~~~~~p~-----gv 72 (343)
T 2qe8_A 9 LEVVAELS-LAPGNITLTPDGRLFLSLHQFY------Q--PEMQVAELTQDG-LIPFPPQSGNA-IITFDTVL-----GI 72 (343)
T ss_dssp CEEEEEES-SCEEEEEECTTSCEEEEECGGG------C--CSCSEEEEETTE-EEESCCCCSSC-CCCCSCEE-----EE
T ss_pred eEEEEEcC-CCcceEEECCCCCEEEEeCCCC------C--CceEEEEECCCC-eecCCCcccCc-ccceeEee-----EE
Confidence 34455555 5689999999999988864320 0 214566655554 34443211000 00001111 58
Q ss_pred EecCCCCCEEEEec------CCeEEEEEcCCceeccccccc------ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEE
Q 005140 325 RWGGGKDKYFAKLG------KNMISVYETESFTLIDKKSLK------VENVMDFSWSPTDPIISLFVPELGGGNQPARVS 392 (712)
Q Consensus 325 ~~s~~dg~~la~~~------d~~i~iwd~~~~~~~~~~~~~------~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~ 392 (712)
++++ +|+++++-. ++.|.+||+.+++++....+. ...+.+++++|++..+.+.- .+......|.
T Consensus 73 ~~d~-~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd---~~~~~~~~i~ 148 (343)
T 2qe8_A 73 KSDG-NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISD---PAPDDKAALI 148 (343)
T ss_dssp EECS-SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEE---CCSGGGCEEE
T ss_pred EEcC-CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEc---CccCCCCeEE
Confidence 8999 988666543 378999999988765433221 12468899998755544310 0111456788
Q ss_pred EEecCCccceeeeeeeee-cceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEE
Q 005140 393 LVQIPSKEELRQKNLFSV-SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAW 471 (712)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~-~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~ 471 (712)
+|+..+.+..+....+.. ......+.++|..+.+...++. +.. + ...+..++|
T Consensus 149 v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~---------~~~--------------~---~~~~~gia~ 202 (343)
T 2qe8_A 149 RVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGT---------VIR--------------P---HLGVNGIVL 202 (343)
T ss_dssp EEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSC---------EEC--------------C---CCCEEEEEE
T ss_pred EEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCc---------eec--------------e---ecccceeEe
Confidence 888766543332211000 0000112334433332222211 000 1 234678999
Q ss_pred eeCCCEEEEEEcCCCCCeEEEEEeecccc-c-------CceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEE
Q 005140 472 EPKGHRFAVIHGDSPRPDISFYSMRTAQH-A-------GRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYN 543 (712)
Q Consensus 472 sp~g~~l~~~~~d~~~~~v~i~d~~~~~~-~-------~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd 543 (712)
+|+|+.|+++...+. .|..++...... . ..+..... ......++++++|+++++... ++.|.+||
T Consensus 203 s~dg~~ly~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~g~--~g~pdgia~d~~G~l~va~~~---~~~V~~~d 275 (343)
T 2qe8_A 203 DAENEWLYLSPMHST--SMYRIKSADLSNLQLTDAELGSKIERYSE--KPICDGISIDKDHNIYVGDLA---HSAIGVIT 275 (343)
T ss_dssp CTTSCEEEEEESSCS--EEEEEEHHHHTCTTCCHHHHHTTCEEEEE--CCSCSCEEECTTCCEEEEEGG---GTEEEEEE
T ss_pred ccCCCEEEEEeCCCC--eEEEEEHHHhcCCCCChhhhhcceEeccc--CCCCceEEECCCCCEEEEccC---CCeEEEEE
Confidence 999999998887652 444444321000 0 00111111 124577999999988877766 88999999
Q ss_pred CCcceeee--ecc-ccceeeEEECCCCCEEEEEEc
Q 005140 544 VDELETMA--TAE-HFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 544 ~~~~~~~~--~~~-~~~v~~~~~spdg~~l~t~s~ 575 (712)
..+++... ... ...+++++++++|+.+++.+.
T Consensus 276 ~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~ 310 (343)
T 2qe8_A 276 SADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQ 310 (343)
T ss_dssp TTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECC
T ss_pred CCCCCEEEEEECCceecCCeeEECCCCcEEEEeCc
Confidence 94454322 222 346789999999987777665
No 426
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.91 E-value=2.2e-09 Score=105.12 Aligned_cols=73 Identities=22% Similarity=0.374 Sum_probs=64.2
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
-.++|||+|||. +..+.+|+++|++||.|.. |.++. ++|||||+|.+.++|.+|+..+||..+.++
T Consensus 21 ~~~~l~V~nLp~------~~te~~l~~~F~~~G~i~~--v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~ 86 (261)
T 3sde_A 21 QRCRLFVGNLPT------DITEEDFKRLFERYGEPSE--VFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSR 86 (261)
T ss_dssp GGGEEEEESCCT------TCCHHHHHHHTGGGCCCSE--EEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEECCCC------CCCHHHHHHHHHhcCCEEE--EEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCc
Confidence 457999999997 5559999999999999999 98864 479999999999999999999999999885
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
.+.|...
T Consensus 87 -~l~v~~a 93 (261)
T 3sde_A 87 -PLRIRFA 93 (261)
T ss_dssp -ECEEEEC
T ss_pred -eeEeeec
Confidence 7777664
No 427
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.91 E-value=1.9e-07 Score=94.90 Aligned_cols=222 Identities=9% Similarity=-0.069 Sum_probs=130.2
Q ss_pred ccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCceEEeecccCccee--eeec-
Q 005140 176 LTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRL--MRYA- 252 (712)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~--~~~~- 252 (712)
..+|++...|++...++.+..|+.. .+. ...+. ....+.+++|+|+|+++++. .+++.+|+.. ++... ....
T Consensus 55 ~~~~~~~~l~~~d~~~~~i~~~d~~-~~~-~~~~~-~~~~v~~i~~~~dg~l~v~~-~~gl~~~d~~-~g~~~~~~~~~~ 129 (326)
T 2ghs_A 55 TFDPASGTAWWFNILERELHELHLA-SGR-KTVHA-LPFMGSALAKISDSKQLIAS-DDGLFLRDTA-TGVLTLHAELES 129 (326)
T ss_dssp EEETTTTEEEEEEGGGTEEEEEETT-TTE-EEEEE-CSSCEEEEEEEETTEEEEEE-TTEEEEEETT-TCCEEEEECSST
T ss_pred eEeCCCCEEEEEECCCCEEEEEECC-CCc-EEEEE-CCCcceEEEEeCCCeEEEEE-CCCEEEEECC-CCcEEEEeeCCC
Confidence 3456555666666666677777762 222 22222 23468899999999988765 6679999987 44432 2211
Q ss_pred -C--CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCC
Q 005140 253 -H--PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGG 329 (712)
Q Consensus 253 -~--~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 329 (712)
. ..+.++.++|+|+++++...... ....+.|..++ +++............ .++|+|
T Consensus 130 ~~~~~~~~~i~~d~~G~l~v~~~~~~~----~~~~~~l~~~~--~g~~~~~~~~~~~~~--------------~i~~s~- 188 (326)
T 2ghs_A 130 DLPGNRSNDGRMHPSGALWIGTMGRKA----ETGAGSIYHVA--KGKVTKLFADISIPN--------------SICFSP- 188 (326)
T ss_dssp TCTTEEEEEEEECTTSCEEEEEEETTC----CTTCEEEEEEE--TTEEEEEEEEESSEE--------------EEEECT-
T ss_pred CCCCCCCCCEEECCCCCEEEEeCCCcC----CCCceEEEEEe--CCcEEEeeCCCcccC--------------CeEEcC-
Confidence 1 13889999999997765542100 01114566666 554332211111111 589999
Q ss_pred CCCEEEEec--CCeEEEEEcC--Cc-eecccccc-----cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc
Q 005140 330 KDKYFAKLG--KNMISVYETE--SF-TLIDKKSL-----KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 399 (712)
Q Consensus 330 dg~~la~~~--d~~i~iwd~~--~~-~~~~~~~~-----~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 399 (712)
|++.++.+. ++.|.+|++. ++ .+...... .......++++++|.+.+. ......|..|+. ..
T Consensus 189 dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva-------~~~~~~v~~~d~-~g 260 (326)
T 2ghs_A 189 DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNA-------RWGEGAVDRYDT-DG 260 (326)
T ss_dssp TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEE-------EETTTEEEEECT-TC
T ss_pred CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEE-------EeCCCEEEEECC-CC
Confidence 998765554 7899999986 55 32211111 1223678999999986654 112235777776 44
Q ss_pred cceeeeeeeeecceeEEEC-cCCCEEEEEEccc
Q 005140 400 EELRQKNLFSVSDCKMYWQ-SSGDYLAVKVDRY 431 (712)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~s-~~g~~l~~~~~~~ 431 (712)
+.+............++|+ +++..|++.+...
T Consensus 261 ~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 261 NHIARYEVPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp CEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred CEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence 4444433333345567787 8888887766543
No 428
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.91 E-value=2.5e-10 Score=107.15 Aligned_cols=80 Identities=14% Similarity=0.228 Sum_probs=60.1
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEE-----EeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCC
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLW-----MPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGY 132 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~-----~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~ 132 (712)
.+++|||+|||. +..+++|+++|++||.|.. +. ...+..+++++|||||+|.+.++|.+|+ .|||.
T Consensus 3 ~~~~l~V~nLp~------~~te~~l~~~F~~~g~i~g--~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~ 73 (198)
T 2yh0_A 3 MARRLYVGNIPF------GITEEAMMDFFNAQMRLGG--LTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGI 73 (198)
T ss_dssp -CCEEEEESCCT------TCCHHHHHHHHHHHHHHHT--CCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTE
T ss_pred ceeEEEEcCCCC------CCCHHHHHHHHHHHHhhcc--cccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCC
Confidence 468999999997 4558999999999953322 11 1111123567899999999999999999 89999
Q ss_pred ccCCceEEEEEeecc
Q 005140 133 KLDRAHIFAVNMFDD 147 (712)
Q Consensus 133 ~~~~~~~l~v~~~~~ 147 (712)
.+.++ .+.|.....
T Consensus 74 ~~~g~-~i~v~~~~~ 87 (198)
T 2yh0_A 74 IFQGQ-SLKIRRPHD 87 (198)
T ss_dssp EETTE-EEEEECCCC
T ss_pred EEcCc-eEEEeCCCC
Confidence 99885 788876443
No 429
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.87 E-value=2.7e-07 Score=98.16 Aligned_cols=268 Identities=11% Similarity=0.019 Sum_probs=162.3
Q ss_pred CCCcEEEEEecCc--eEEeecccCcceee--eecC-CCeeEEEe-c-CCCCEEEEEcCCCCC--------CCcCCCccEE
Q 005140 223 PLGTYLATVHRQG--AAVWGGANTFNRLM--RYAH-PQVKLIDF-S-PGEKYLVTYSSHEPS--------NPRDANRVVI 287 (712)
Q Consensus 223 pdg~~lat~~~~~--i~iw~~~~~~~~~~--~~~~-~~v~~i~~-S-pdg~~l~t~s~d~~~--------~~~~~~~~~I 287 (712)
|||++|.....++ |.+.|+. +++... .++. .+...+++ + |+++|++.++..... ...+...+.+
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~-t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCD-VMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETT-TTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECC-CceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 3899999887766 8899999 888666 4443 45889998 6 999999888643110 0112333689
Q ss_pred EEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-C---------------CeEEEEEcCCce
Q 005140 288 NIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-K---------------NMISVYETESFT 351 (712)
Q Consensus 288 ~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d---------------~~i~iwd~~~~~ 351 (712)
.+.|..+++.+..+......- .+..+| +|+++++.+ + ..|.+.+.....
T Consensus 178 tvID~~t~~v~~qI~Vgg~pd--------------~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~ 242 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSGNLD--------------NCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE 242 (595)
T ss_dssp EEEETTTTEEEEEEEESSCCC--------------CEEECS-SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred EEEECCCCeEEEEEEeCCCcc--------------ceEECC-CCCEEEEEecCcccCcchhhccccccceEEEeecccee
Confidence 999999998888776433222 478999 999988877 2 235555544221
Q ss_pred ecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCC--ccc-eeeeeeeeecceeEEECcCCCEEEEEE
Q 005140 352 LIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS--KEE-LRQKNLFSVSDCKMYWQSSGDYLAVKV 428 (712)
Q Consensus 352 ~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~--~~~-~~~~~~~~~~~~~~~~s~~g~~l~~~~ 428 (712)
. +.++|+.... + .|.+++..+ .+. +..... ......+.++|||+++++..
T Consensus 243 ~---------------~v~~Gk~~~i-------~----~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~ 295 (595)
T 1fwx_A 243 K---------------AIAAGDYQEL-------N----GVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAG 295 (595)
T ss_dssp H---------------HHHHTCSEEE-------T----TEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEEC
T ss_pred E---------------eccCCCeeEE-------C----cEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeC
Confidence 1 2233443332 1 155566655 222 222222 22344567899999998866
Q ss_pred cccccccccccccEEEEEEecCC-----------cceeEEEecCCCCceEEEEEeeCCCEEEEEEc-CCCCCeEEEEEee
Q 005140 429 DRYTKTKKSTYTGFELFRIKERD-----------IPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDISFYSMR 496 (712)
Q Consensus 429 ~~~~~~~~~~~~~~~l~~l~~~~-----------~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~-d~~~~~v~i~d~~ 496 (712)
.... .+.++++.... .....+.+ ......++|+|+| ++.+... ++ +|..|++.
T Consensus 296 ~~s~--------~VsVid~~~~~~~~~~~l~~~~~v~~~v~v---G~gP~h~aF~~dG-~aY~t~~lds---qV~kwdi~ 360 (595)
T 1fwx_A 296 KLSP--------TVTVLDVTRFDAVFYENADPRSAVVAEPEL---GLGPLHTAFDGRG-NAYTSLFLDS---QVVKWNIE 360 (595)
T ss_dssp TTSS--------BEEEEEGGGHHHHHHSCCCGGGGEEECCBC---CSCEEEEEECTTS-EEEEEETTTT---EEEEEEHH
T ss_pred CCCC--------eEEEEECcccccccccccCcccceEEEcCC---CCCcceEEECCCC-eEEEEEecCC---cEEEEEhh
Confidence 5432 25666655221 01111222 4567889999999 6555544 56 89999997
Q ss_pred ccc----ccCceeEEEEeCCC-ce------eEEEEccCCCeEEEEeccCCCce----------EEEEECCcce
Q 005140 497 TAQ----HAGRVSKLTTLKGK-QA------NALFWSPSGRFIVLAGLKGFNGQ----------LEFYNVDELE 548 (712)
Q Consensus 497 ~~~----~~~~~~~~~~~~~~-~v------~~l~~spdg~~l~~~~~~~~dg~----------v~iwd~~~~~ 548 (712)
+.. +......+.++.-+ +. ..+..+|||++|+++...+-|.. -.++|+.+++
T Consensus 361 ~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 361 DAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp HHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred HhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence 621 11112355555533 22 22355899999999886542332 2889997543
No 430
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.85 E-value=3.6e-09 Score=99.08 Aligned_cols=73 Identities=19% Similarity=0.251 Sum_probs=62.5
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccC-eeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIG-VIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g-~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
+++|||+|||. ...+++|+++|++|| .|.. +.+..+ .+|||||+|.+.++|.+|+..|||..+++.
T Consensus 120 ~~~l~v~nl~~------~~~~~~l~~~f~~~G~~v~~--v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g 186 (198)
T 1qm9_A 120 SATLHLSNIPP------SVSEEDLKVLFSSNGGVVKG--FKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGEN 186 (198)
T ss_dssp CCEEEECCCCT------TCCHHHHHHHHHHTTSCCCE--EEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSC
T ss_pred ccEEEEeCCCC------CCCHHHHHHHHHHcCCCceE--EEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 78999999997 444889999999999 9999 888543 279999999999999999999999999833
Q ss_pred eEEEEEe
Q 005140 138 HIFAVNM 144 (712)
Q Consensus 138 ~~l~v~~ 144 (712)
+.+.|..
T Consensus 187 ~~l~v~~ 193 (198)
T 1qm9_A 187 HHLRVSF 193 (198)
T ss_dssp CSCCEEE
T ss_pred CeEEEEe
Confidence 4666665
No 431
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.83 E-value=5e-09 Score=95.62 Aligned_cols=70 Identities=14% Similarity=0.310 Sum_probs=58.8
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhcc----C-------eeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHH
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQI----G-------VIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKE 127 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~ 127 (712)
+++|||+|||. +..+++|+++|++| | .|.. +.+. +++|||||+|.++++|.+|+
T Consensus 4 ~~~l~V~nLp~------~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~--~~~~------~~~g~afV~f~~~~~A~~A~- 68 (172)
T 2g4b_A 4 ARRLYVGNIPF------GITEEAMMDFFNAQMRLGGLTQAPGNPVLA--VQIN------QDKNFAFLEFRSVDETTQAM- 68 (172)
T ss_dssp GGEEEEESCCT------TCCHHHHHHHHHHHHHHTTCCSSSSCSEEE--EEEE------TTTTEEEEEESSHHHHHHHG-
T ss_pred ccEEEEcCCCc------ccCHHHHHHHHHHHhhhcccccCCCCceee--eEec------CCCCEEEEEeCCHHHHHHHH-
Confidence 57999999997 45589999999999 5 5555 5543 45899999999999999999
Q ss_pred HhCCCccCCceEEEEEe
Q 005140 128 KTNGYKLDRAHIFAVNM 144 (712)
Q Consensus 128 ~~~~~~~~~~~~l~v~~ 144 (712)
.+||..+.++ .+.+..
T Consensus 69 ~~~~~~~~g~-~i~v~~ 84 (172)
T 2g4b_A 69 AFDGIIFQGQ-SLKIRR 84 (172)
T ss_dssp GGTTCEETTE-ECEEEC
T ss_pred HhCCcEecCc-eeeecC
Confidence 8999999885 777765
No 432
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.82 E-value=8.8e-09 Score=98.66 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=62.9
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccC-eeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCc
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIG-VIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDRA 137 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g-~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~~ 137 (712)
+++|||+|||. ...+++|+++|++|| .|.. +.+..+ .+|||||+|.+.++|.+|++.|||..+++.
T Consensus 151 ~~~l~V~nlp~------~~t~~~l~~~f~~~G~~i~~--v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g 217 (229)
T 2adc_A 151 SATLHLSNIPP------SVSEEDLKVLFSSNGGVVKG--FKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGEN 217 (229)
T ss_dssp CSEEEEECCCT------TCCHHHHHHHHHTTSCCEEE--EEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCEEEEeCCCc------cCCHHHHHHHHHHcCCCeeE--EEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCC
Confidence 68999999997 444899999999999 9999 888432 379999999999999999999999999823
Q ss_pred eEEEEEee
Q 005140 138 HIFAVNMF 145 (712)
Q Consensus 138 ~~l~v~~~ 145 (712)
+.+.|...
T Consensus 218 ~~l~v~~a 225 (229)
T 2adc_A 218 HHLRVSFS 225 (229)
T ss_dssp CBCEEEEC
T ss_pred CeEEEEEe
Confidence 47777653
No 433
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.81 E-value=8.1e-07 Score=85.71 Aligned_cols=209 Identities=11% Similarity=0.091 Sum_probs=127.9
Q ss_pred cceeeeecCCC---eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCc
Q 005140 245 FNRLMRYAHPQ---VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSW 321 (712)
Q Consensus 245 ~~~~~~~~~~~---v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (712)
.+.+.+++|+. ...+.|+|+|...++.+.. ..+.|.++|+.+|+.++.+.......
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~--------~~s~v~~iD~~tg~v~~~i~l~~~~f------------- 67 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAENDTLFESTGLY--------GRSSVRQVALQTGKVENIHKMDDSYF------------- 67 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECSTTEEEEEECST--------TTCEEEEEETTTCCEEEEEECCTTCC-------------
T ss_pred ceEEEEEECCCCCCcccEEEeCCCeEEEECCCC--------CCCEEEEEECCCCCEEEEEecCCCcc-------------
Confidence 45667777764 5899999997544444431 01689999999999998876443322
Q ss_pred CeEEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc
Q 005140 322 PVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 399 (712)
Q Consensus 322 ~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 399 (712)
...+.. +++.|..+. ++.+.++|..+++.+...... .+ ....+++||+.+.+ .++...|+.++..+.
T Consensus 68 -geGi~~-~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~-~g~glt~Dg~~l~v-------s~gs~~l~viD~~t~ 136 (266)
T 2iwa_A 68 -GEGLTL-LNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MK-DGWGLATDGKILYG-------SDGTSILYEIDPHTF 136 (266)
T ss_dssp -EEEEEE-ETTEEEEEETTCSEEEEEETTTTEEEEEEECC-SS-SCCEEEECSSSEEE-------ECSSSEEEEECTTTC
T ss_pred -eEEEEE-eCCEEEEEEecCCEEEEEECCCCcEEEEEECC-CC-CeEEEEECCCEEEE-------ECCCCeEEEEECCCC
Confidence 122333 445555444 999999999999887654333 11 23446668877776 234667777776655
Q ss_pred cceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEE
Q 005140 400 EELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFA 479 (712)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~ 479 (712)
+.+....... . +.+ -..++.+.|. +|. +.
T Consensus 137 ~v~~~I~Vg~-------------------~---------------------~~p---------~~~~nele~~-dg~-ly 165 (266)
T 2iwa_A 137 KLIKKHNVKY-------------------N---------------------GHR---------VIRLNELEYI-NGE-VW 165 (266)
T ss_dssp CEEEEEECEE-------------------T---------------------TEE---------CCCEEEEEEE-TTE-EE
T ss_pred cEEEEEEECC-------------------C---------------------Ccc---------cccceeEEEE-CCE-EE
Confidence 4333222100 0 000 1234556666 664 44
Q ss_pred EEEc-CCCCCeEEEEEeecccccCceeEEEEeCC---------------CceeEEEEccCCCeEEEEeccCCCceEEEEE
Q 005140 480 VIHG-DSPRPDISFYSMRTAQHAGRVSKLTTLKG---------------KQANALFWSPSGRFIVLAGLKGFNGQLEFYN 543 (712)
Q Consensus 480 ~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~~~---------------~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd 543 (712)
+... .+ .|.+.|..++. .+..+.- ...+.++|+|+++.+++++.. .+.|+..+
T Consensus 166 vn~~~~~---~V~vID~~tg~------V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~--~~~v~~i~ 234 (266)
T 2iwa_A 166 ANIWQTD---CIARISAKDGT------LLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKL--WPKLFEIK 234 (266)
T ss_dssp EEETTSS---EEEEEETTTCC------EEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETT--CSEEEEEE
T ss_pred EecCCCC---eEEEEECCCCc------EEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCC--CCeEEEEE
Confidence 4443 34 88888987665 3333321 134899999999887777642 67888888
Q ss_pred CCcc
Q 005140 544 VDEL 547 (712)
Q Consensus 544 ~~~~ 547 (712)
+...
T Consensus 235 l~~~ 238 (266)
T 2iwa_A 235 LHLV 238 (266)
T ss_dssp EEEC
T ss_pred Eecc
Confidence 7643
No 434
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.78 E-value=2.1e-08 Score=76.80 Aligned_cols=76 Identities=14% Similarity=0.236 Sum_probs=61.7
Q ss_pred CCEEEECCCCCCCch-hh-hhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC
Q 005140 59 GNIIVVDNLPVVPKE-KF-EKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLDR 136 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~-~~-~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~~ 136 (712)
+.+|+|...|..++. -+ +.|-..|.+.|++||.|.. +.++.|+ +||+|.+.+.|.+|++ |||+.+.+
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~--vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVIL--IRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEE--EEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEE--EEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 458888887731111 01 4677889999999999999 9999876 8999999999999998 99999998
Q ss_pred ceEEEEEeec
Q 005140 137 AHIFAVNMFD 146 (712)
Q Consensus 137 ~~~l~v~~~~ 146 (712)
+ .++|+...
T Consensus 76 r-~LkV~lkt 84 (91)
T 2dnr_A 76 R-TITIALKS 84 (91)
T ss_dssp E-EEEEEECC
T ss_pred e-EEEEEeCC
Confidence 5 99988743
No 435
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.74 E-value=3.1e-08 Score=81.72 Aligned_cols=75 Identities=13% Similarity=0.120 Sum_probs=61.3
Q ss_pred CCCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCC-HHHHHHHHHHhC--CCcc
Q 005140 58 FGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNT-PQEAELAKEKTN--GYKL 134 (712)
Q Consensus 58 ~~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~-~~~a~~a~~~~~--~~~~ 134 (712)
.+++|+|+|||.-+ ..+++|+++|++||+|.. |.+..|+. .|||+|.+ +++|..|++.+| |..|
T Consensus 17 ~G~il~v~~l~~~~-----~sredLke~F~~~G~V~~--Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i 83 (121)
T 1owx_A 17 IGCLLKFSGDLDDQ-----TCREDLHILFSNHGEIKW--IDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQL 83 (121)
T ss_dssp CCCEEEEEESCCSS-----CCHHHHHHHTCSSCCEEE--EECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCT
T ss_pred CCeEEEEecCCCCc-----CCHHHHHHHHHhcCCEEE--EEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEE
Confidence 45699999999730 448999999999999999 99999874 49999999 899999999995 6777
Q ss_pred CCceEEEEEeec
Q 005140 135 DRAHIFAVNMFD 146 (712)
Q Consensus 135 ~~~~~l~v~~~~ 146 (712)
.+ ..+++..+.
T Consensus 84 ~g-~~~~~evL~ 94 (121)
T 1owx_A 84 RN-KEVTWEVLE 94 (121)
T ss_dssp TS-SSEEEEECC
T ss_pred eC-cEEEEEECC
Confidence 76 356655443
No 436
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.73 E-value=1.3e-06 Score=97.68 Aligned_cols=74 Identities=11% Similarity=0.098 Sum_probs=51.7
Q ss_pred ceEEEEECCcceeeeeccc-cceeeEEECCCCCEEEEEEccceeccccEEEEEec-Cceeeeeccc---ceeeeEEecCC
Q 005140 537 GQLEFYNVDELETMATAEH-FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRTLKD---HFFQFLWRPRP 611 (712)
Q Consensus 537 g~v~iwd~~~~~~~~~~~~-~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~~~~---~i~~~~w~p~~ 611 (712)
|.|..||+.+++.+-+... ..+....++.+|..+++++. |+.+++||.. |+.+...... ...-+.|.++|
T Consensus 457 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~-----dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G 531 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTA-----DGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDG 531 (677)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECT-----TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred cEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECC-----CCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCC
Confidence 8899999999998766433 34556667778888888877 9999999976 7777655321 12234556666
Q ss_pred CCCC
Q 005140 612 PSFL 615 (712)
Q Consensus 612 ~~l~ 615 (712)
+.++
T Consensus 532 ~~~v 535 (677)
T 1kb0_A 532 RQYV 535 (677)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5433
No 437
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.69 E-value=3.3e-08 Score=76.04 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=62.9
Q ss_pred CCEEEECCCCCCCchhh---hhhHHHHHHHhhccCeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Q 005140 59 GNIIVVDNLPVVPKEKF---EKLEGVIRKIYSQIGVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGYKLD 135 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~---~~~~~~l~~~f~~~g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~~ 135 (712)
+.+|+|..+|...+++. +.+-..|.+.|++||+|.. ++++.|+ +||+|.+.++|.+|++ |||+.++
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vil--vr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVL--VRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSE--EEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEE--EEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 45999998874333221 3466779999999999999 9999986 9999999999999998 9999999
Q ss_pred CceEEEEEeec
Q 005140 136 RAHIFAVNMFD 146 (712)
Q Consensus 136 ~~~~l~v~~~~ 146 (712)
++ .++|+...
T Consensus 84 Gr-~L~V~~k~ 93 (95)
T 1ufw_A 84 GR-AVKISGPS 93 (95)
T ss_dssp TE-EEEEECCC
T ss_pred Ce-EEEEeccC
Confidence 95 89888643
No 438
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.68 E-value=2.5e-05 Score=76.58 Aligned_cols=252 Identities=10% Similarity=-0.012 Sum_probs=144.0
Q ss_pred CEEEEecCCeEEEEEcCCceecc-----cccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeee
Q 005140 332 KYFAKLGKNMISVYETESFTLID-----KKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKN 406 (712)
Q Consensus 332 ~~la~~~d~~i~iwd~~~~~~~~-----~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 406 (712)
.+|..+..+.|+.+++....... ........+.+++|+|++..|.+. .....+|+.++...........
T Consensus 2 ~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~------d~~~~~I~~~~~~g~~~~~~~~ 75 (267)
T 1npe_A 2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWT------DISEPSIGRASLHGGEPTTIIR 75 (267)
T ss_dssp EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEE------ETTTTEEEEEESSSCCCEEEEC
T ss_pred cEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEE------ECCCCEEEEEecCCCCcEEEEE
Confidence 45555555678888877543210 011112346799999987766652 2234577788775543211111
Q ss_pred eeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCC
Q 005140 407 LFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSP 486 (712)
Q Consensus 407 ~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~ 486 (712)
........+++++++..|+++..... .++.+...+.....+ ..........++++|++.+|+++.....
T Consensus 76 ~~~~~p~~ia~d~~~~~lyv~d~~~~----------~I~~~~~~g~~~~~~-~~~~~~~P~~i~vd~~~g~lyv~~~~~~ 144 (267)
T 1npe_A 76 QDLGSPEGIALDHLGRTIFWTDSQLD----------RIEVAKMDGTQRRVL-FDTGLVNPRGIVTDPVRGNLYWTDWNRD 144 (267)
T ss_dssp TTCCCEEEEEEETTTTEEEEEETTTT----------EEEEEETTSCSCEEE-ECSSCSSEEEEEEETTTTEEEEEECCSS
T ss_pred CCCCCccEEEEEecCCeEEEEECCCC----------EEEEEEcCCCCEEEE-EECCCCCccEEEEeeCCCEEEEEECCCC
Confidence 11123345678888777777654322 344443333222222 2112245788999997777766654311
Q ss_pred CCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeecc-ccceeeEEECC
Q 005140 487 RPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE-HFMATDVEWDP 565 (712)
Q Consensus 487 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~-~~~v~~~~~sp 565 (712)
...|..++++.... ..+........+.++++|++.+|+++..+ .+.|..+++.+........ ......++.
T Consensus 145 ~~~I~~~~~dg~~~----~~~~~~~~~~P~gia~d~~~~~lyv~d~~--~~~I~~~~~~g~~~~~~~~~~~~P~gi~~-- 216 (267)
T 1npe_A 145 NPKIETSHMDGTNR----RILAQDNLGLPNGLTFDAFSSQLCWVDAG--THRAECLNPAQPGRRKVLEGLQYPFAVTS-- 216 (267)
T ss_dssp SCEEEEEETTSCCC----EEEECTTCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTEEEEEEEEECCCSEEEEEE--
T ss_pred CcEEEEEecCCCCc----EEEEECCCCCCcEEEEcCCCCEEEEEECC--CCEEEEEecCCCceEEEecCCCCceEEEE--
Confidence 12787887753221 12222222356889999998888777652 5789999998654332211 223445655
Q ss_pred CCCEEEEEEccceeccccEEEEEec-Cceeeeeccc---ceeeeEEecCCC
Q 005140 566 TGRYVATAVTSVHEMENGFNIWSFN-GKLLYRTLKD---HFFQFLWRPRPP 612 (712)
Q Consensus 566 dg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~~~~---~i~~~~w~p~~~ 612 (712)
++.+|..+... .+.|.+++.. |..+.....+ ..+.+++.|++.
T Consensus 217 d~~~lyva~~~----~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 217 YGKNLYYTDWK----TNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp ETTEEEEEETT----TTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred eCCEEEEEECC----CCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 45666666542 5789999986 6666655443 478899999864
No 439
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.67 E-value=2.5e-06 Score=81.19 Aligned_cols=126 Identities=10% Similarity=0.157 Sum_probs=84.6
Q ss_pred cceeeeecCCC---eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCc
Q 005140 245 FNRLMRYAHPQ---VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSW 321 (712)
Q Consensus 245 ~~~~~~~~~~~---v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (712)
.+.+.+++|.. ...+.|+ ++....+.+.+ +...|+++|+.+|+.++.+.......
T Consensus 31 ~~vv~~~phd~~~ftqGL~~~-~~~LyestG~~--------g~S~v~~vD~~Tgkv~~~~~l~~~~F------------- 88 (262)
T 3nol_A 31 YQIVHSYPHDTKAFTEGFFYR-NGYFYESTGLN--------GRSSIRKVDIESGKTLQQIELGKRYF------------- 88 (262)
T ss_dssp EEEEEEEECCTTCEEEEEEEE-TTEEEEEEEET--------TEEEEEEECTTTCCEEEEEECCTTCC-------------
T ss_pred eEEEEEecCCCCcccceEEEE-CCEEEEECCCC--------CCceEEEEECCCCcEEEEEecCCccc-------------
Confidence 34667777764 6899999 67666666654 11489999999999998887654432
Q ss_pred CeEEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc
Q 005140 322 PVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 399 (712)
Q Consensus 322 ~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 399 (712)
.....+ +++.|.... ++.+.+||..+++++....... ....+++++..|.. .++..+|+.+|..+.
T Consensus 89 -geGit~-~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~-------SdGs~~i~~iDp~T~ 156 (262)
T 3nol_A 89 -GEGISD-WKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIM-------SDGTPVLRFLDPESL 156 (262)
T ss_dssp -EEEEEE-ETTEEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCCEEECSSCEEE-------CCSSSEEEEECTTTC
T ss_pred -eeEEEE-eCCEEEEEEeeCCEEEEEECccCcEEEEEECCC---CceEEecCCCEEEE-------ECCCCeEEEEcCCCC
Confidence 122333 444444444 9999999999998886654433 33445567888776 456778888887766
Q ss_pred cceee
Q 005140 400 EELRQ 404 (712)
Q Consensus 400 ~~~~~ 404 (712)
+.+..
T Consensus 157 ~v~~~ 161 (262)
T 3nol_A 157 TPVRT 161 (262)
T ss_dssp SEEEE
T ss_pred eEEEE
Confidence 54443
No 440
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.67 E-value=4.3e-06 Score=93.75 Aligned_cols=78 Identities=18% Similarity=0.185 Sum_probs=52.4
Q ss_pred eEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeecc---ccceeeEEEC
Q 005140 489 DISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE---HFMATDVEWD 564 (712)
Q Consensus 489 ~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~---~~~v~~~~~s 564 (712)
.|..||+.+++. +-.+. +.+...-.++..|..+++++. ||.|+.||..+++++.+.. ....+-+.|+
T Consensus 456 ~l~A~D~~tG~~------~W~~~~~~~~~~g~~~tagglvf~gt~---dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~ 526 (689)
T 1yiq_A 456 KLIAWDPVKQQA------AWEVPYVTIFNGGTLSTAGNLVFEGSA---DGRVIAYAADTGEKLWEQPAASGVMAAPVTYS 526 (689)
T ss_dssp EEEEEETTTTEE------EEEEEESSSCCCCEEEETTTEEEEECT---TSEEEEEETTTCCEEEEEECSSCCCSCCEEEE
T ss_pred eEEEEECCCCCe------EeEccCCCCccCccceECCCEEEEECC---CCcEEEEECCCCccceeeeCCCCcccCceEEE
Confidence 688888877652 22222 223444466778888988887 9999999999999986532 2223457788
Q ss_pred CCCC-EEEEEEc
Q 005140 565 PTGR-YVATAVT 575 (712)
Q Consensus 565 pdg~-~l~t~s~ 575 (712)
.+|+ |+++.+.
T Consensus 527 ~~G~qyv~~~~G 538 (689)
T 1yiq_A 527 VDGEQYVTFMAG 538 (689)
T ss_dssp ETTEEEEEEEEC
T ss_pred ECCEEEEEEEec
Confidence 9998 4554443
No 441
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.66 E-value=1.6e-05 Score=82.43 Aligned_cols=290 Identities=10% Similarity=0.053 Sum_probs=150.9
Q ss_pred CcEEEEEecCc-eEEeecccCcceeeeecC----------CCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc
Q 005140 225 GTYLATVHRQG-AAVWGGANTFNRLMRYAH----------PQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR 293 (712)
Q Consensus 225 g~~lat~~~~~-i~iw~~~~~~~~~~~~~~----------~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~ 293 (712)
+..|++++.++ +..+|.. +++.+-++.. ..........++..|+.++.+ +.|..+|..
T Consensus 53 ~~~v~~~~~~g~v~a~d~~-tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~----------g~l~a~d~~ 121 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNAD-DGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEK----------AQVYALNTS 121 (376)
T ss_dssp TTEEEEECTTSEEEEEETT-TCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETT----------SEEEEEETT
T ss_pred CCEEEEEcCCCeEEEEEcc-CCceeeeecCccccccccccCcccccCceEeCCEEEEEcCC----------CEEEEEECC
Confidence 45566666665 7788887 6665544432 111111222245677777777 889999999
Q ss_pred CCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceecccccccccCe-----eeEEE
Q 005140 294 TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENV-----MDFSW 368 (712)
Q Consensus 294 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~~~v-----~~~~~ 368 (712)
+|+.+..+........ .... . ++..++...++.|..+|..+++.+.......... .....
T Consensus 122 tG~~~W~~~~~~~~~~-------------~p~~-~-~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~ 186 (376)
T 3q7m_A 122 DGTVAWQTKVAGEALS-------------RPVV-S-DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT 186 (376)
T ss_dssp TCCEEEEEECSSCCCS-------------CCEE-E-TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE
T ss_pred CCCEEEEEeCCCceEc-------------CCEE-E-CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE
Confidence 9998876655432210 1222 2 4444444449999999999988776543322111 11122
Q ss_pred CCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeee-----------cceeEEECcCCCEEEEEEccccccccc
Q 005140 369 SPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSV-----------SDCKMYWQSSGDYLAVKVDRYTKTKKS 437 (712)
Q Consensus 369 sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----------~~~~~~~s~~g~~l~~~~~~~~~~~~~ 437 (712)
. +..+.+ ++. ...+..++..+.+.+-....... ...... -.+..+++++.++.
T Consensus 187 ~--~~~v~~-----g~~--~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~v~~~~~~g~----- 250 (376)
T 3q7m_A 187 A--FGAAVV-----GGD--NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPV--VVNGVVFALAYNGN----- 250 (376)
T ss_dssp E--TTEEEE-----CCT--TTEEEEEETTTCCEEEEEECCC-----------CCCCCCE--EETTEEEEECTTSC-----
T ss_pred E--CCEEEE-----EcC--CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcE--EECCEEEEEecCcE-----
Confidence 1 234444 322 34566666655544332221100 000000 12344444443332
Q ss_pred ccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC---CCc
Q 005140 438 TYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK---GKQ 514 (712)
Q Consensus 438 ~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~---~~~ 514 (712)
+..++... +...-... ......+. .++..+++++.++ .|..+|..++. .+.... ...
T Consensus 251 ----l~~~d~~t-G~~~w~~~----~~~~~~~~--~~~~~l~~~~~~g---~l~~~d~~tG~------~~w~~~~~~~~~ 310 (376)
T 3q7m_A 251 ----LTALDLRS-GQIMWKRE----LGSVNDFI--VDGNRIYLVDQND---RVMALTIDGGV------TLWTQSDLLHRL 310 (376)
T ss_dssp ----EEEEETTT-CCEEEEEC----CCCEEEEE--EETTEEEEEETTC---CEEEEETTTCC------EEEEECTTTTSC
T ss_pred ----EEEEECCC-CcEEeecc----CCCCCCce--EECCEEEEEcCCC---eEEEEECCCCc------EEEeecccCCCc
Confidence 22222111 11111111 12223333 2467788888877 79999987665 233222 222
Q ss_pred eeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccc--ccee-eEEECCCCCEEEEEEccceeccccEEEEE
Q 005140 515 ANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEH--FMAT-DVEWDPTGRYVATAVTSVHEMENGFNIWS 588 (712)
Q Consensus 515 v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~--~~v~-~~~~spdg~~l~t~s~~~~~~d~~v~iw~ 588 (712)
...+.. .+..|++++. +|.|+++|..+++.+..... ..+. .+.. .+..|+.++. ++.+..|+
T Consensus 311 ~~~~~~--~~~~l~v~~~---~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~-----~G~l~~~~ 375 (376)
T 3q7m_A 311 LTSPVL--YNGNLVVGDS---EGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAK-----DGTVYSIT 375 (376)
T ss_dssp CCCCEE--ETTEEEEECT---TSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBT-----TSCEEEEE
T ss_pred ccCCEE--ECCEEEEEeC---CCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeC-----CCEEEEEe
Confidence 333333 3567777776 89999999999988765322 2222 2222 2456777777 78888776
No 442
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.63 E-value=4.6e-05 Score=74.59 Aligned_cols=249 Identities=8% Similarity=-0.029 Sum_probs=137.5
Q ss_pred CcEEEEEecCceEEeecccCcce------eeeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcee
Q 005140 225 GTYLATVHRQGAAVWGGANTFNR------LMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVM 298 (712)
Q Consensus 225 g~~lat~~~~~i~iw~~~~~~~~------~~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~ 298 (712)
|.+|.++..+.|..++..+.... +...+...+..++|+|++.+|..+... .+.|.++++..+...
T Consensus 1 ~~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~---------~~~I~~~~~~g~~~~ 71 (267)
T 1npe_A 1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDIS---------EPSIGRASLHGGEPT 71 (267)
T ss_dssp CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETT---------TTEEEEEESSSCCCE
T ss_pred CcEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECC---------CCEEEEEecCCCCcE
Confidence 56777777666888887733211 122222347899999987777665543 168999998654432
Q ss_pred eeccCC-CcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCeeeEEECCCCCeE
Q 005140 299 RDFKGS-ADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPII 375 (712)
Q Consensus 299 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 375 (712)
..+... .... .+++++ ++..|..+. .+.|.++++..................++++|++..|
T Consensus 72 ~~~~~~~~~p~--------------~ia~d~-~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~l 136 (267)
T 1npe_A 72 TIIRQDLGSPE--------------GIALDH-LGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNL 136 (267)
T ss_dssp EEECTTCCCEE--------------EEEEET-TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEE
T ss_pred EEEECCCCCcc--------------EEEEEe-cCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEE
Confidence 222211 1111 578888 766555554 7899999987432111011122357889999976665
Q ss_pred EEEeecCCCCCCCeEEEEEecCCcc--ceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcc
Q 005140 376 SLFVPELGGGNQPARVSLVQIPSKE--ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIP 453 (712)
Q Consensus 376 a~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 453 (712)
.+. .......+|+.++..... .+.... -.....+++++++.+|+++..... .++.++..+..
T Consensus 137 yv~----~~~~~~~~I~~~~~dg~~~~~~~~~~--~~~P~gia~d~~~~~lyv~d~~~~----------~I~~~~~~g~~ 200 (267)
T 1npe_A 137 YWT----DWNRDNPKIETSHMDGTNRRILAQDN--LGLPNGLTFDAFSSQLCWVDAGTH----------RAECLNPAQPG 200 (267)
T ss_dssp EEE----ECCSSSCEEEEEETTSCCCEEEECTT--CSCEEEEEEETTTTEEEEEETTTT----------EEEEEETTEEE
T ss_pred EEE----ECCCCCcEEEEEecCCCCcEEEEECC--CCCCcEEEEcCCCCEEEEEECCCC----------EEEEEecCCCc
Confidence 542 111124567777654322 111111 122345688999888877665432 34444333221
Q ss_pred eeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC---ceeEEEEccCCC
Q 005140 454 IEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK---QANALFWSPSGR 525 (712)
Q Consensus 454 ~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~---~v~~l~~spdg~ 525 (712)
...+ +.. ......++ +++..++++...+. .|..++..++. .+..+..+ ....+++.|++.
T Consensus 201 ~~~~-~~~-~~~P~gi~--~d~~~lyva~~~~~--~v~~~d~~~g~------~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 201 RRKV-LEG-LQYPFAVT--SYGKNLYYTDWKTN--SVIAMDLAISK------EMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEEE-EEC-CCSEEEEE--EETTEEEEEETTTT--EEEEEETTTTE------EEEEECCSSCCCCCCEEEECSCC
T ss_pred eEEE-ecC-CCCceEEE--EeCCEEEEEECCCC--eEEEEeCCCCC------ceEEEccccccccceeeecCccC
Confidence 1111 111 22334555 45677777665432 88888886544 44555422 357788888875
No 443
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.63 E-value=1e-07 Score=90.70 Aligned_cols=84 Identities=17% Similarity=0.289 Sum_probs=66.8
Q ss_pred CCEEEECCCCCCCchhhhhhHHHHHHHhhccCeeeeceEEEecc----CCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Q 005140 59 GNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGVIKEDGLWMPVD----PETQKSLGYCFIEYNTPQEAELAKEKTNGYKL 134 (712)
Q Consensus 59 ~~~~~v~~lp~~~~~~~~~~~~~l~~~f~~~g~v~~~~~~~~~d----~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~~~ 134 (712)
+..+.+.|+-...+ -.+-++.+|++.|++||.|.+ +.++.+ +++|+++||+||+|.+.++|.+|++.|||..+
T Consensus 124 s~v~~l~n~v~~~e-~~~e~~~dl~~e~~~~G~v~~--~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~ 200 (222)
T 3dxb_A 124 STVMVLRNMVDPKD-IDDDLEGEVTEECGKFGAVNR--VIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 200 (222)
T ss_dssp CSEEEEESSCCGGG-CCTTHHHHHHHHHTTTSCEEE--EEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred cccchhhcCCCHHH-HHHHHHHHHHHHHHccCCeEE--EEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE
Confidence 45566666543222 124578899999999999999 999854 45669999999999999999999999999999
Q ss_pred CCceEEEEEeec
Q 005140 135 DRAHIFAVNMFD 146 (712)
Q Consensus 135 ~~~~~l~v~~~~ 146 (712)
+|+ .+.+..+.
T Consensus 201 ~gr-~i~~~~~~ 211 (222)
T 3dxb_A 201 AGR-KVVAEVYD 211 (222)
T ss_dssp SSS-BCEEEECC
T ss_pred CCe-EEEEEEcC
Confidence 997 77777654
No 444
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.60 E-value=4.2e-06 Score=95.15 Aligned_cols=165 Identities=7% Similarity=-0.042 Sum_probs=95.2
Q ss_pred CCCc-ccceEEEc-CCCcEEEEEecC-c-----eEEeecccCc-ceeeeecCCC-eeEEEecCCCCEEEEEcCCCCCCCc
Q 005140 211 RSYW-TESFVQWS-PLGTYLATVHRQ-G-----AAVWGGANTF-NRLMRYAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPR 280 (712)
Q Consensus 211 ~~~~-~v~~v~~S-pdg~~lat~~~~-~-----i~iw~~~~~~-~~~~~~~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~ 280 (712)
+|.. .+..++|| |||++||++... | |.++++. ++ ..+.. .... ...+.|||||+.|+....+..
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~-~g~~~l~~-~~~~~~~~~~WspDg~~l~y~~~d~~---- 243 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRIS-DPSQTIAD-KVSGTNGEIVWGPDHTSLFYVTKDET---- 243 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETT-CTTCCCCC-CEEEECSCCEECSSTTEEEEEEECTT----
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECC-CCCEeCCc-cccCceeeEEEecCCCEEEEEEECCC----
Confidence 3443 67789999 999999987642 1 7788998 55 42211 1111 457899999999988876521
Q ss_pred CCCccEEEEEEccCCce--eeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec----CCeEEEEEcCCcee-c
Q 005140 281 DANRVVINIFDVRTGKV--MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG----KNMISVYETESFTL-I 353 (712)
Q Consensus 281 ~~~~~~I~iwd~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~----d~~i~iwd~~~~~~-~ 353 (712)
.....|+++++.++.. ...+....... +..+.||| ||++|+... ...|.++++.++.. .
T Consensus 244 -~~~~~v~~~~lgt~~~~~~lv~~~~~~~~------------~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~ 309 (751)
T 2xe4_A 244 -LRENKVWRHVMGKLQSEDVCLYEEHNPLF------------SAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRKGNAHN 309 (751)
T ss_dssp -CCEEEEEEEETTSCGGGCEEEEECCCTTC------------EEEEEECT-TSSEEEEEEECSSCEEEEEEESSSCTTCC
T ss_pred -CCCCEEEEEECCCCchhcEEEEecCCCce------------EEEEEECC-CCCEEEEEecCCCCceEEEEECCCCCCCc
Confidence 1114788899877642 22222211111 11578999 999888665 45688888876421 1
Q ss_pred --ccccc-cccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCC
Q 005140 354 --DKKSL-KVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPS 398 (712)
Q Consensus 354 --~~~~~-~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~ 398 (712)
..... .......+.|+. |..|++.+... .....+|+.++...
T Consensus 310 ~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~--~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 310 TLEIVRPREKGVRYDVQMHG-TSHLVILTNEG--GAVNHKLLIAPRGQ 354 (751)
T ss_dssp CEEESSCCCTTCCEEEEEET-TTEEEEEECTT--TCTTCEEEEEETTS
T ss_pred eeEEeecCCCCceEEEeeee-CCEEEEEeCCC--CCCCcEEEEEcCCC
Confidence 11111 111223333332 66665532211 13567888888764
No 445
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.60 E-value=5.1e-06 Score=80.10 Aligned_cols=180 Identities=11% Similarity=0.018 Sum_probs=119.8
Q ss_pred ceEEEcCCCcEEEEEec---CceEEeecccCcceeeeecCCC---eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEE
Q 005140 217 SFVQWSPLGTYLATVHR---QGAAVWGGANTFNRLMRYAHPQ---VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIF 290 (712)
Q Consensus 217 ~~v~~Spdg~~lat~~~---~~i~iw~~~~~~~~~~~~~~~~---v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iw 290 (712)
..++|+|||.+.++.+. +.|.+.|.. +++.+.++..+. ...+++ +|+.|..+.... +.+.++
T Consensus 24 ~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~-tg~v~~~i~l~~~~fgeGi~~--~g~~lyv~t~~~---------~~v~vi 91 (266)
T 2iwa_A 24 QGLVYAENDTLFESTGLYGRSSVRQVALQ-TGKVENIHKMDDSYFGEGLTL--LNEKLYQVVWLK---------NIGFIY 91 (266)
T ss_dssp EEEEECSTTEEEEEECSTTTCEEEEEETT-TCCEEEEEECCTTCCEEEEEE--ETTEEEEEETTC---------SEEEEE
T ss_pred ccEEEeCCCeEEEECCCCCCCEEEEEECC-CCCEEEEEecCCCcceEEEEE--eCCEEEEEEecC---------CEEEEE
Confidence 56899999866665543 238899999 888887765332 334555 455665555431 789999
Q ss_pred EccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccc-----cCee
Q 005140 291 DVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKV-----ENVM 364 (712)
Q Consensus 291 d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~-----~~v~ 364 (712)
|..+++.+.++... ... ....++ ||+.++.+. ++.|.++|..+.+.+....... ..++
T Consensus 92 D~~t~~v~~~i~~g-~~~--------------g~glt~-Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~n 155 (266)
T 2iwa_A 92 DRRTLSNIKNFTHQ-MKD--------------GWGLAT-DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLN 155 (266)
T ss_dssp ETTTTEEEEEEECC-SSS--------------CCEEEE-CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred ECCCCcEEEEEECC-CCC--------------eEEEEE-CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccce
Confidence 99999999988654 111 123556 777666555 8899999999887765543322 2366
Q ss_pred eEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeee-------------ecceeEEECcCCCEEEEEEccc
Q 005140 365 DFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFS-------------VSDCKMYWQSSGDYLAVKVDRY 431 (712)
Q Consensus 365 ~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-------------~~~~~~~~s~~g~~l~~~~~~~ 431 (712)
.+.|. +|...+. ......|..++..+.+.+....+.. .....++|+|+++.+++.....
T Consensus 156 ele~~-dg~lyvn-------~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~ 227 (266)
T 2iwa_A 156 ELEYI-NGEVWAN-------IWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLW 227 (266)
T ss_dssp EEEEE-TTEEEEE-------ETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTC
T ss_pred eEEEE-CCEEEEe-------cCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCC
Confidence 78888 6643332 2234578999999888766655431 1224678999999888876654
Q ss_pred c
Q 005140 432 T 432 (712)
Q Consensus 432 ~ 432 (712)
.
T Consensus 228 ~ 228 (266)
T 2iwa_A 228 P 228 (266)
T ss_dssp S
T ss_pred C
Confidence 3
No 446
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.57 E-value=2.6e-05 Score=87.30 Aligned_cols=306 Identities=11% Similarity=0.064 Sum_probs=162.2
Q ss_pred CCcEEEEEecCc-eEEeecccCcceeeeecCC-C---eeEEEecC--CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc
Q 005140 224 LGTYLATVHRQG-AAVWGGANTFNRLMRYAHP-Q---VKLIDFSP--GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK 296 (712)
Q Consensus 224 dg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~-~---v~~i~~Sp--dg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~ 296 (712)
++..|++++.++ +..+|.. +++.+-++... . ...+.-+| .+..+++++.... ....+.|..||..+|+
T Consensus 127 ~~~~v~v~~~dg~l~alD~~-tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~----~~~~g~v~a~D~~tG~ 201 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAA-TGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAE----YGVRGYITAYDAETGE 201 (677)
T ss_dssp ETTEEEEECTTSEEEEEETT-TCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTT----TCCBCEEEEEETTTCC
T ss_pred ECCEEEEEcCCCEEEEEECC-CCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccc----cCCCCEEEEEECCCCc
Confidence 355677777776 8889988 77766555432 1 01111112 2344555443100 0112789999999999
Q ss_pred eeeeccCCCcccccCC------------C--C-----CcCCCCcCeEEecCCCCCEEEEec-CC----------------
Q 005140 297 VMRDFKGSADEFAVGG------------T--G-----GVAGVSWPVFRWGGGKDKYFAKLG-KN---------------- 340 (712)
Q Consensus 297 ~~~~~~~~~~~~~~~~------------~--~-----~~~~~~~~~~~~s~~dg~~la~~~-d~---------------- 340 (712)
.+..+........... . + ...+..|..+.+++ ++..++.+. ++
T Consensus 202 ~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~ 280 (677)
T 1kb0_A 202 RKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNL 280 (677)
T ss_dssp EEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCT
T ss_pred EEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccccCCCCCccCCCCe
Confidence 9877755322100000 0 0 00112355678899 888777665 43
Q ss_pred ---eEEEEEcCCceeccccccccc---------CeeeEEECCCC---CeEEEEeecCCCCCCCeEEEEEecCCccceeee
Q 005140 341 ---MISVYETESFTLIDKKSLKVE---------NVMDFSWSPTD---PIISLFVPELGGGNQPARVSLVQIPSKEELRQK 405 (712)
Q Consensus 341 ---~i~iwd~~~~~~~~~~~~~~~---------~v~~~~~sp~~---~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 405 (712)
.|..+|..+++.+........ ...-+....+| ..|++ .+..+.++.++..+.+.+...
T Consensus 281 ~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~-------~~~~G~l~~lD~~tG~~l~~~ 353 (677)
T 1kb0_A 281 YLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILH-------APKNGFFFVLDRTNGKFISAK 353 (677)
T ss_dssp TTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEE-------CCTTSEEEEEETTTCCEEEEE
T ss_pred eeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEE-------ECCCCEEEEEECCCCCEeccc
Confidence 488999999987765433211 11112222356 44554 445567888888777765544
Q ss_pred eeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCC--ceEEEEEeeCCCEEEEEEc
Q 005140 406 NLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKND--KIIAFAWEPKGHRFAVIHG 483 (712)
Q Consensus 406 ~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~--~v~~~~~sp~g~~l~~~~~ 483 (712)
.+....-. -.+...|+.+.....+ + .+.+ ....++..+ .-..++++|++..+++...
T Consensus 354 ~~~~~~~~-~~~d~~g~~~~~~~~~--------~----------~~~~--~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~ 412 (677)
T 1kb0_A 354 NFVPVNWA-SGYDKHGKPIGIAAAR--------D----------GSKP--QDAVPGPYGAHNWHPMSFNPQTGLVYLPAQ 412 (677)
T ss_dssp ESSCCSSE-EEECTTSCEEECGGGG--------C----------TTSC--EECSSCTTCSSCSSCCEEETTTTEEEEEEE
T ss_pred cccccCcc-cccCCCCceeeccccC--------c----------CCCc--cEECcCcccccCCCCceEcCCCCEEEEeCh
Confidence 32221100 0011122211100000 0 0000 011111011 1125678888877777554
Q ss_pred C-------------C---------------------------CCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEcc
Q 005140 484 D-------------S---------------------------PRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSP 522 (712)
Q Consensus 484 d-------------~---------------------------~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~sp 522 (712)
+ + +...|..||+.+++ .+-.+. +.+.....++.
T Consensus 413 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~------~~W~~~~~~~~~~g~~~~ 486 (677)
T 1kb0_A 413 NVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK------AAWSVEHVSPWNGGTLTT 486 (677)
T ss_dssp ECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE------EEEEEEESSSCCCCEEEE
T ss_pred hcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc------EEeecCCCCCCcCcceEe
Confidence 2 0 01268888887665 222322 23445556777
Q ss_pred CCCeEEEEeccCCCceEEEEECCcceeeeeccc---cceeeEEECCCCCEEEE
Q 005140 523 SGRFIVLAGLKGFNGQLEFYNVDELETMATAEH---FMATDVEWDPTGRYVAT 572 (712)
Q Consensus 523 dg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~---~~v~~~~~spdg~~l~t 572 (712)
+|..+++++. +|.+++||..+++++.+... ...+-+.|+++|+.++.
T Consensus 487 ~g~~v~~g~~---dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 487 AGNVVFQGTA---DGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp TTTEEEEECT---TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCCEEEEECC---CCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 8888888876 99999999999999876332 23345677889974443
No 447
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.56 E-value=7.5e-06 Score=93.04 Aligned_cols=255 Identities=7% Similarity=-0.020 Sum_probs=135.2
Q ss_pred CeeEEEec-CCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC-ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCC
Q 005140 255 QVKLIDFS-PGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG-KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK 332 (712)
Q Consensus 255 ~v~~i~~S-pdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~ 332 (712)
.+..++|| |||++||.+.... +....+|+++|+.+| +.+.. ..... ...+.|+| ||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~-----G~~~~~l~v~dl~~g~~~l~~---~~~~~------------~~~~~Wsp-Dg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMS-----GNEVYTIEFKRISDPSQTIAD---KVSGT------------NGEIVWGP-DHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESS-----SSSCEEEEEEETTCTTCCCCC---CEEEE------------CSCCEECS-STT
T ss_pred EEeeeEecCCCCCEEEEEEeCC-----CCceEEEEEEECCCCCEeCCc---cccCc------------eeeEEEec-CCC
Confidence 37789999 9999999776531 111147999999888 63211 00000 11579999 999
Q ss_pred EEEEec-C-----CeEEEEEcCCceeccccccc---ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc-ce
Q 005140 333 YFAKLG-K-----NMISVYETESFTLIDKKSLK---VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE-EL 402 (712)
Q Consensus 333 ~la~~~-d-----~~i~iwd~~~~~~~~~~~~~---~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~-~~ 402 (712)
.|+... + ..|.++++.++......... ..-...+.|||||++|++... ......||++++.... ..
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~----~~~~~~l~~~d~~~~~~~~ 309 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQ----SPETAEVHLLDLRKGNAHN 309 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEE----CSSCEEEEEEESSSCTTCC
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEec----CCCCceEEEEECCCCCCCc
Confidence 888776 3 35777777665322111111 122567899999999987532 2346688888886542 11
Q ss_pred --eeeeeeeecceeEEECcC---CCEEEEEEcccccccccccccEEEEEEecCC-cceeEEEecCCCCceEEEEEeeCCC
Q 005140 403 --RQKNLFSVSDCKMYWQSS---GDYLAVKVDRYTKTKKSTYTGFELFRIKERD-IPIEVLELDNKNDKIIAFAWEPKGH 476 (712)
Q Consensus 403 --~~~~~~~~~~~~~~~s~~---g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~l~~h~~~v~~~~~sp~g~ 476 (712)
.... ... ....|+++ |..|++.++... .....||.++... ...... +..|...+.--.+++.++
T Consensus 310 ~~~~l~-~~~--~~~~~s~~~~~g~~l~~~t~~~~------a~~~~L~~~d~~~~~~~~~~-li~~~~~~~l~~~~~~~~ 379 (751)
T 2xe4_A 310 TLEIVR-PRE--KGVRYDVQMHGTSHLVILTNEGG------AVNHKLLIAPRGQPSDWSHV-LVDHSEDVFMESIAVRSN 379 (751)
T ss_dssp CEEESS-CCC--TTCCEEEEEETTTEEEEEECTTT------CTTCEEEEEETTSTTCCCCE-EECCCSSEEEEEEEECSS
T ss_pred eeEEee-cCC--CCceEEEeeeeCCEEEEEeCCCC------CCCcEEEEEcCCCcccceee-EECCCCCcEEEEEEEECC
Confidence 1111 001 11234454 888877776530 1124677766532 111110 223344333234455667
Q ss_pred EEEEEEcCCCCCeEEEEEe-------ecccccCceeEEEEeCCC-ceeEEEE----ccCCCeEEEE-eccCCCceEEEEE
Q 005140 477 RFAVIHGDSPRPDISFYSM-------RTAQHAGRVSKLTTLKGK-QANALFW----SPSGRFIVLA-GLKGFNGQLEFYN 543 (712)
Q Consensus 477 ~l~~~~~d~~~~~v~i~d~-------~~~~~~~~~~~~~~~~~~-~v~~l~~----spdg~~l~~~-~~~~~dg~v~iwd 543 (712)
.|++.........|.++++ .++.. ...+ .+... .+..+.+ ++++..++.. +.....+.++.+|
T Consensus 380 ~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~---~~~l-~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d 455 (751)
T 2xe4_A 380 YLVVAGRRAGLTRIWTMMADSQDGVFKAGTG---LREV-VMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVS 455 (751)
T ss_dssp EEEEEEEETTEEEEEEEECCTTTSCCCTTTC---CEEC-CCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEEC
T ss_pred EEEEEEEeCCEEEEEEEecccccccccCCcc---ceEE-CCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEE
Confidence 7776665433335666775 22210 1122 12222 1233333 4466655443 3222346788888
Q ss_pred CCcce
Q 005140 544 VDELE 548 (712)
Q Consensus 544 ~~~~~ 548 (712)
+.+++
T Consensus 456 ~~~~~ 460 (751)
T 2xe4_A 456 PQDHS 460 (751)
T ss_dssp TTTCC
T ss_pred CCCCc
Confidence 87654
No 448
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.55 E-value=1.6e-05 Score=75.04 Aligned_cols=126 Identities=12% Similarity=0.162 Sum_probs=83.8
Q ss_pred cceeeeecCCC---eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCc
Q 005140 245 FNRLMRYAHPQ---VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSW 321 (712)
Q Consensus 245 ~~~~~~~~~~~---v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (712)
.+.+.+++|+. ...+.|++ +....+.+.. +...|+++|+.+|+.++.+.......
T Consensus 9 ~~v~~~~phd~~~ftqGL~~~~-~~LyestG~~--------g~S~v~~vD~~tgkv~~~~~l~~~~f------------- 66 (243)
T 3mbr_X 9 YRVVKRYPHDTTAFTEGLFYLR-GHLYESTGET--------GRSSVRKVDLETGRILQRAEVPPPYF------------- 66 (243)
T ss_dssp EEEEEEEECCTTCCEEEEEEET-TEEEEEECCT--------TSCEEEEEETTTCCEEEEEECCTTCC-------------
T ss_pred eEEEEEcCCCCccccccEEEEC-CEEEEECCCC--------CCceEEEEECCCCCEEEEEeCCCCcc-------------
Confidence 45667777775 78999987 5555555554 11489999999999999887655432
Q ss_pred CeEEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc
Q 005140 322 PVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 399 (712)
Q Consensus 322 ~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 399 (712)
...... +++.|.... ++.+.+||..+++++........+ ..+++++..|.+ .++..+|+.+|..+.
T Consensus 67 -geGi~~-~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G---wglt~dg~~L~v-------Sdgs~~l~~iDp~t~ 134 (243)
T 3mbr_X 67 -GAGIVA-WRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG---WALTSDDSHLYM-------SDGTAVIRKLDPDTL 134 (243)
T ss_dssp -EEEEEE-ETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCC---CEEEECSSCEEE-------ECSSSEEEEECTTTC
T ss_pred -eeEEEE-eCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc---eEEeeCCCEEEE-------ECCCCeEEEEeCCCC
Confidence 122223 344444444 999999999999988765543333 344467777776 456778888887776
Q ss_pred cceee
Q 005140 400 EELRQ 404 (712)
Q Consensus 400 ~~~~~ 404 (712)
+.+..
T Consensus 135 ~~~~~ 139 (243)
T 3mbr_X 135 QQVGS 139 (243)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 55443
No 449
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.54 E-value=5.8e-06 Score=83.80 Aligned_cols=264 Identities=10% Similarity=-0.068 Sum_probs=146.4
Q ss_pred CCcccceEEEcCCCcEEEEEecCceEEeecccCcceeeeecCCC--eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEE
Q 005140 212 SYWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQ--VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINI 289 (712)
Q Consensus 212 ~~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~~--v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~i 289 (712)
+...+.++...++|.+.+. +.+ +..+|.. +..+..+.... ...+.+. +..|..++.+ +.|..
T Consensus 58 ~~~~~~~~~~~~~g~l~v~-t~~-l~~~d~~--g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~----------~~l~~ 121 (330)
T 3hxj_A 58 GEIIECRPSIGKDGTIYFG-SDK-VYAINPD--GTEKWRFDTKKAIVSDFTIF--EDILYVTSMD----------GHLYA 121 (330)
T ss_dssp GGEEEECCEETTTTEECCS-SCE-EEEECCC--GGGGGGSCC-----CCEEEE--TTEEEEECTT----------SEEEE
T ss_pred CCCcccceEEecCCcEEEe-cCc-EEEECCC--CcEEEEEECCCCcccCceEE--CCEEEEEecC----------CEEEE
Confidence 3345577888888875554 333 7777754 33333332221 3333343 4556677777 78999
Q ss_pred EEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceecccccccccCeeeEEEC
Q 005140 290 FDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWS 369 (712)
Q Consensus 290 wd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 369 (712)
+|.. |+.+..+..+..... .+...+ ++.+++...++.|..|+.. ++.+.........+.++...
T Consensus 122 ~d~~-g~~~~~~~~~~~~~~-------------~~~~~~-~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d 185 (330)
T 3hxj_A 122 INTD-GTEKWRFKTKKAIYA-------------TPIVSE-DGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIG 185 (330)
T ss_dssp ECTT-SCEEEEEECSSCCCS-------------CCEECT-TSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEEC
T ss_pred EcCC-CCEEEEEcCCCceee-------------eeEEcC-CCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEc
Confidence 9987 777666554332221 356677 7776665558999999988 66655444444456777787
Q ss_pred CCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEec
Q 005140 370 PTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKE 449 (712)
Q Consensus 370 p~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 449 (712)
+++...+. + ..++.++ ++.+.+............+...++|.. .+++.++ .++.+..
T Consensus 186 ~~g~l~v~------t----~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l-~v~t~~~-----------gl~~~~~ 242 (330)
T 3hxj_A 186 KDGTIYFG------S----DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTI-YVTSLDG-----------HLYAINP 242 (330)
T ss_dssp TTCCEEEE------S----SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCE-EEEETTT-----------EEEEECT
T ss_pred CCCEEEEE------e----CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeE-EEEcCCC-----------eEEEECC
Confidence 78876653 2 3466666 444433332222223334455666654 4444332 2333333
Q ss_pred CCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEE
Q 005140 450 RDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVL 529 (712)
Q Consensus 450 ~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~ 529 (712)
.+........ ....+.++...+++ .|.+++.++ .|..++. ++.. .....+....+.++...++|+..+
T Consensus 243 ~g~~~~~~~~--~~~~~~~~~~~~~g-~l~v~t~~g---gl~~~d~-~g~~----~~~~~~~~~~~~~~~~d~~g~l~~- 310 (330)
T 3hxj_A 243 DGTEKWRFKT--GKRIESSPVIGNTD-TIYFGSYDG---HLYAINP-DGTE----KWNFETGSWIIATPVIDENGTIYF- 310 (330)
T ss_dssp TSCEEEEEEC--SSCCCSCCEECTTS-CEEEECTTC---EEEEECT-TSCE----EEEEECSSCCCSCCEECTTCCEEE-
T ss_pred CCCEeEEeeC--CCCccccceEcCCC-eEEEecCCC---CEEEECC-CCcE----EEEEEcCCccccceEEcCCCEEEE-
Confidence 3332222222 22333445555455 566666666 6888875 3221 122333444577788888887554
Q ss_pred EeccCCCceEEEEECC
Q 005140 530 AGLKGFNGQLEFYNVD 545 (712)
Q Consensus 530 ~~~~~~dg~v~iwd~~ 545 (712)
++. +|.+++....
T Consensus 311 gt~---~G~~~~~~~~ 323 (330)
T 3hxj_A 311 GTR---NGKFYALFNL 323 (330)
T ss_dssp ECT---TSCEEEEEC-
T ss_pred EcC---CCeEEEEecc
Confidence 555 8988887765
No 450
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.50 E-value=0.0011 Score=76.16 Aligned_cols=340 Identities=9% Similarity=0.031 Sum_probs=186.1
Q ss_pred cceEEEcCCCcEEEEEecCceEEeecccCcceeeee---cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEc
Q 005140 216 ESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRY---AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDV 292 (712)
Q Consensus 216 v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~---~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~ 292 (712)
+.++...++|.+.+.....|+..|+.. +....... ....|.++...++|.+.+..... | |.+||.
T Consensus 175 i~~i~~d~~g~lwigt~~~Gl~~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~----------G-l~~~~~ 242 (795)
T 4a2l_A 175 IASTLYRQGDQIYIGTSTDGLYTYSIT-QKTFEKVIPILGTKQIQAILQQSPTRIWVATEGA----------G-LFLINP 242 (795)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEETT-TCCEEECC----CCCEEEEEEEETTEEEEEEBSS----------C-EEEEET
T ss_pred eEEEEECCCCCEEEEECCCCEEEEeCC-CCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCC----------C-eEEEeC
Confidence 778888889987775545689999876 43322211 13348899888888876655444 3 888997
Q ss_pred cCCceeeeccCCC-cccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceeccc-------ccccccCee
Q 005140 293 RTGKVMRDFKGSA-DEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDK-------KSLKVENVM 364 (712)
Q Consensus 293 ~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~-------~~~~~~~v~ 364 (712)
.+++... +.... .... .......++...+ +|.+.+...+ .|.+|+..++....- ..+....|.
T Consensus 243 ~~~~~~~-~~~~~~~~~~------l~~~~i~~i~~d~-~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~ 313 (795)
T 4a2l_A 243 KTKEIKN-YLHSPSNPKS------ISSNYIRSLAMDS-QNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVR 313 (795)
T ss_dssp TTTEEEE-ECCCTTCTTS------CSCSBEEEEEECT-TSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEE
T ss_pred CCCeEEE-eecCCCCccc------cCCCeEEEEEEcC-CCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEE
Confidence 6665433 32211 0000 0000011466677 7776654444 688898776543211 112334588
Q ss_pred eEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc--ceee----eeeeeecceeEEECcCCCEEEEEEcccccccccc
Q 005140 365 DFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE--ELRQ----KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKST 438 (712)
Q Consensus 365 ~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~--~~~~----~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~ 438 (712)
++...++|.+-+. +.++. |..++..... .+.. ..+......++...++|.. .+++.++.
T Consensus 314 ~i~~D~~g~lWig------t~~~G--l~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~l-WiGt~~~G------ 378 (795)
T 4a2l_A 314 SIFMDSQGGMWLG------TYFGG--LNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNL-WIGTNDGG------ 378 (795)
T ss_dssp EEEECTTSCEEEE------ESSSC--EEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCE-EEEESSSC------
T ss_pred EEEEeCCcCEEEE------ECCCC--eEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCE-EEEECCCC------
Confidence 9998888875542 22222 3444432221 1110 0111222334445566653 34444322
Q ss_pred cccEEEEEEecCCcceeEEEec-------CCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEE--
Q 005140 439 YTGFELFRIKERDIPIEVLELD-------NKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTT-- 509 (712)
Q Consensus 439 ~~~~~l~~l~~~~~~~~~~~l~-------~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~-- 509 (712)
+..|+ ............ -....|.+++..++|+.|.+++.++ -|..|+..++.. ..+..
T Consensus 379 ---l~~~~--~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~---Gl~~~d~~~~~~----~~~~~~~ 446 (795)
T 4a2l_A 379 ---LNLYN--PITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAG---GLSILHRNSGQV----ENFNQRN 446 (795)
T ss_dssp ---EEEEC--TTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTT---EEEEEETTTCCE----EEECTTT
T ss_pred ---eEEEc--CCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcC---ceeEEeCCCCcE----EEeecCC
Confidence 22222 211111111110 0135688898888888566666655 588888765431 12211
Q ss_pred --eCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeec--------cccceeeEEECCCCCEEEEEEcccee
Q 005140 510 --LKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATA--------EHFMATDVEWDPTGRYVATAVTSVHE 579 (712)
Q Consensus 510 --~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~--------~~~~v~~~~~spdg~~l~t~s~~~~~ 579 (712)
+....|.++...++|+..+.. . +.|.+|+..+++..... ....|.++..+++|+..+. +.
T Consensus 447 ~~l~~~~v~~i~~d~~g~lwigt-~----~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~---- 516 (795)
T 4a2l_A 447 SQLVNENVYAILPDGEGNLWLGT-L----SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIG-GE---- 516 (795)
T ss_dssp SCCSCSCEEEEEECSSSCEEEEE-S----SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEE-ES----
T ss_pred CCcCCCeeEEEEECCCCCEEEEe-c----CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEE-eC----
Confidence 223468889988888765543 2 35888998866543321 2256889999999985443 33
Q ss_pred ccccEEEEEecCceeee--------ecccceeeeEEecCCCCCC
Q 005140 580 MENGFNIWSFNGKLLYR--------TLKDHFFQFLWRPRPPSFL 615 (712)
Q Consensus 580 ~d~~v~iw~~~g~~~~~--------~~~~~i~~~~w~p~~~~l~ 615 (712)
+++..|+..+..... .....+.++...+++...+
T Consensus 517 --~Gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi 558 (795)
T 4a2l_A 517 --EGLSVFKQEGLDIQKASILPVSNVTKLFTNCIYEASNGIIWV 558 (795)
T ss_dssp --SCEEEEEEETTEEEECCCSCSCGGGGSCEEEEEECTTSCEEE
T ss_pred --CceEEEeCCCCeEEEecCCCCCCCCCCeeEEEEECCCCCEEE
Confidence 467788776443310 1224577777777777544
No 451
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.49 E-value=0.0008 Score=77.14 Aligned_cols=344 Identities=9% Similarity=0.038 Sum_probs=188.8
Q ss_pred CcccceEEEcCCCcEEEEEecCceEEeecccCcceee-ee--------cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCC
Q 005140 213 YWTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLM-RY--------AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDAN 283 (712)
Q Consensus 213 ~~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~-~~--------~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~ 283 (712)
...|.++...++|.+.+....+|+.+|+.. +..... .. ....|.++...++|...+.. ..
T Consensus 214 ~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~-~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~~--------- 282 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWVATEGAGLFLINPK-TKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGT-FN--------- 282 (795)
T ss_dssp CCCEEEEEEEETTEEEEEEBSSCEEEEETT-TTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEE-SS---------
T ss_pred CCeeEEEEEcCCCCEEEEECCCCeEEEeCC-CCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEe-CC---------
Confidence 456788888889988777667789999987 433221 11 12349999999998866544 33
Q ss_pred ccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceecc--c----cc
Q 005140 284 RVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLID--K----KS 357 (712)
Q Consensus 284 ~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~--~----~~ 357 (712)
| |.+|+..++.............. ...-...++...+ +|.+-+...++.|..|+..+..... . ..
T Consensus 283 -G-l~~~~~~~~~~~~~~~~~~~~~~------l~~~~i~~i~~D~-~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~ 353 (795)
T 4a2l_A 283 -D-LNIYHEGTDSFASYSSNPVENGS------LSQRSVRSIFMDS-QGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNS 353 (795)
T ss_dssp -C-EEEEETTTTEEEEECCCTTSTTS------CSSSCEEEEEECT-TSCEEEEESSSCEEEECGGGGSSEEECCCTTSSS
T ss_pred -h-hheEcCCCCeEEEEecCCCCCCC------CCCCcEEEEEEeC-CcCEEEEECCCCeEEeCCCcccceEEcCCCCCCC
Confidence 3 78899766654332211110000 0000011466777 7776665557788888866443211 1 11
Q ss_pred ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeee--------eeeeecceeEEECcCCCEEEEEEc
Q 005140 358 LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK--------NLFSVSDCKMYWQSSGDYLAVKVD 429 (712)
Q Consensus 358 ~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--------~~~~~~~~~~~~s~~g~~l~~~~~ 429 (712)
+....|.++...++|.+.+. +.++. |..++..+....... .+.......+...++|..|.+++.
T Consensus 354 l~~~~V~~i~~d~~g~lWiG------t~~~G--l~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~ 425 (795)
T 4a2l_A 354 LSDNVVSCIVEDKDKNLWIG------TNDGG--LNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTH 425 (795)
T ss_dssp CSCSSEEEEEECTTSCEEEE------ESSSC--EEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEET
T ss_pred CCCCeeEEEEECCCCCEEEE------ECCCC--eEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeC
Confidence 22345888888888775542 22222 445554433211100 111122334455567764555554
Q ss_pred ccccccccccccEEEEEEecCCcceeEEEec---CCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeE
Q 005140 430 RYTKTKKSTYTGFELFRIKERDIPIEVLELD---NKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSK 506 (712)
Q Consensus 430 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~---~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~ 506 (712)
++. |+.++............ .+...|.++...++|...+.. .. .|.+|+..++.. ..
T Consensus 426 ~~G-----------l~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~----Gl~~~~~~~~~~----~~ 485 (795)
T 4a2l_A 426 AGG-----------LSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS----ALVRFNPEQRSF----TT 485 (795)
T ss_dssp TTE-----------EEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS----CEEEEETTTTEE----EE
T ss_pred cCc-----------eeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC----ceeEEeCCCCeE----EE
Confidence 322 33333322222111110 124578888888888755544 44 488888754321 12
Q ss_pred EE------EeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeee-------eccccceeeEEECCCCCEEEEE
Q 005140 507 LT------TLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA-------TAEHFMATDVEWDPTGRYVATA 573 (712)
Q Consensus 507 ~~------~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~-------~~~~~~v~~~~~spdg~~l~t~ 573 (712)
+. .+....+.++...++|+..+... +.|..|+..+.+... ......|.++..+++|+..+ +
T Consensus 486 ~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-----~Gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-g 559 (795)
T 4a2l_A 486 IEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-----EGLSVFKQEGLDIQKASILPVSNVTKLFTNCIYEASNGIIWV-G 559 (795)
T ss_dssp CCBCTTCCBCCCCCEEEEEECTTCCEEEEES-----SCEEEEEEETTEEEECCCSCSCGGGGSCEEEEEECTTSCEEE-E
T ss_pred ccccccccccCCceEEEEEECCCCCEEEEeC-----CceEEEeCCCCeEEEecCCCCCCCCCCeeEEEEECCCCCEEE-E
Confidence 21 11234578899999998665442 358888877655411 12335688999999998443 4
Q ss_pred EccceeccccEEEEEecCceeeee------cccceeeeEEecCCCCCCC
Q 005140 574 VTSVHEMENGFNIWSFNGKLLYRT------LKDHFFQFLWRPRPPSFLT 616 (712)
Q Consensus 574 s~~~~~~d~~v~iw~~~g~~~~~~------~~~~i~~~~w~p~~~~l~s 616 (712)
+. +++..|+......... ....|.++...++|...++
T Consensus 560 T~------~Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~ 602 (795)
T 4a2l_A 560 TR------EGFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLS 602 (795)
T ss_dssp ES------SCEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEE
T ss_pred eC------CCceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEE
Confidence 44 3777888665433322 1245777777777765444
No 452
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.49 E-value=1e-05 Score=76.89 Aligned_cols=124 Identities=6% Similarity=0.053 Sum_probs=80.1
Q ss_pred ceeeeecCCC---eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcC
Q 005140 246 NRLMRYAHPQ---VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWP 322 (712)
Q Consensus 246 ~~~~~~~~~~---v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (712)
+.+.+++|+. ...+.|+. +...++.+.+ +.|+++|+.+|+.++.+ ....... .
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~-~~Ly~stG~~----------g~v~~iD~~Tgkv~~~~-l~~~~Fg-------e----- 99 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQ-GHFFESTGHQ----------GTLRQLSLESAQPVWME-RLGNIFA-------E----- 99 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEEEEEETTT----------TEEEECCSSCSSCSEEE-ECTTCCE-------E-----
T ss_pred EEEEEEcCCCccccceEEEEC-CEEEEEcCCC----------CEEEEEECCCCcEEeEE-CCCCcce-------e-----
Confidence 4566777764 67899983 5556666666 78999999999988887 4333220 0
Q ss_pred eEEecCCCCCEEEEecCCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccce
Q 005140 323 VFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEEL 402 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~ 402 (712)
.+.... +.-|+++..++.+.+||..+++++........+ ..+++++..|.. .++..+|+.+|..+.+.+
T Consensus 100 Git~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eG---wGLt~Dg~~L~v-------SdGs~~l~~iDp~T~~v~ 168 (268)
T 3nok_A 100 GLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEG---WGLCYWNGKLVR-------SDGGTMLTFHEPDGFALV 168 (268)
T ss_dssp EEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEECSSCC---CCEEEETTEEEE-------ECSSSEEEEECTTTCCEE
T ss_pred EEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeCCCce---eEEecCCCEEEE-------ECCCCEEEEEcCCCCeEE
Confidence 133333 322333333999999999999988765543322 334467777776 345778888887666544
Q ss_pred ee
Q 005140 403 RQ 404 (712)
Q Consensus 403 ~~ 404 (712)
..
T Consensus 169 ~~ 170 (268)
T 3nok_A 169 GA 170 (268)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 453
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.46 E-value=1.8e-05 Score=80.06 Aligned_cols=295 Identities=9% Similarity=-0.041 Sum_probs=160.1
Q ss_pred ceEEEcCCCcEEEEEecCceEEeecccCcceeeeecCCC--eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC
Q 005140 217 SFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYAHPQ--VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT 294 (712)
Q Consensus 217 ~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~~~~--v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~ 294 (712)
.++....+|.+.+.....++..|| . +++.+..+..+. +.++...++|...+ +.. + |..+|. +
T Consensus 23 ~~~~~d~~g~l~v~t~~~~l~~~d-~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v--~t~----------~-l~~~d~-~ 86 (330)
T 3hxj_A 23 SSPILAKNGTIYLGSSNKNLYAIN-T-DGSVKWFFKSGEIIECRPSIGKDGTIYF--GSD----------K-VYAINP-D 86 (330)
T ss_dssp CCCEECTTSCEECSSTTTTTEEEC-T-TSCEEESSCGGGEEEECCEETTTTEECC--SSC----------E-EEEECC-C
T ss_pred cCceEccCCeEEEEcCCCEEEEEC-C-CCcEEEEEecCCCcccceEEecCCcEEE--ecC----------c-EEEECC-C
Confidence 456776777655444345588999 6 566555443322 56777777776443 334 5 888885 7
Q ss_pred CceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceecccccccccCeeeEEECCCCCe
Q 005140 295 GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPI 374 (712)
Q Consensus 295 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 374 (712)
|+.+..+..+..... ..... ++.+.+...++.|..++.. +............+.++...+++..
T Consensus 87 g~~~~~~~~~~~~~~-------------~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l 150 (330)
T 3hxj_A 87 GTEKWRFDTKKAIVS-------------DFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTI 150 (330)
T ss_dssp GGGGGGSCC-----C-------------CEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCE
T ss_pred CcEEEEEECCCCccc-------------CceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEE
Confidence 776655543322110 12222 3444444448899999988 6655444333344666777777775
Q ss_pred EEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcce
Q 005140 375 ISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPI 454 (712)
Q Consensus 375 la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 454 (712)
++. +. ...++.++.. .+.+............+...++|...+ ++ +. ++.++..+...
T Consensus 151 ~vg------t~--~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~-----------l~~~d~~g~~~ 207 (330)
T 3hxj_A 151 YVG------SN--DNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DK-----------VYAINPDGTEK 207 (330)
T ss_dssp EEE------CT--TSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SS-----------EEEECTTSCEE
T ss_pred EEE------cC--CCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CE-----------EEEECCCCcEE
Confidence 552 22 2456677765 443322222222233344556666443 33 22 33333222222
Q ss_pred eEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeEEEEccCCCeEEEEec
Q 005140 455 EVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANALFWSPSGRFIVLAGL 532 (712)
Q Consensus 455 ~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~l~~spdg~~l~~~~~ 532 (712)
.....+...+.+++..++|.. .+++.++ .|..++. ++. .+..+. ...+..+.+.++|. |.+++.
T Consensus 208 --~~~~~~~~~~~~~~~~~~g~l-~v~t~~~---gl~~~~~-~g~------~~~~~~~~~~~~~~~~~~~~g~-l~v~t~ 273 (330)
T 3hxj_A 208 --WNFYAGYWTVTRPAISEDGTI-YVTSLDG---HLYAINP-DGT------EKWRFKTGKRIESSPVIGNTDT-IYFGSY 273 (330)
T ss_dssp --EEECCSSCCCSCCEECTTSCE-EEEETTT---EEEEECT-TSC------EEEEEECSSCCCSCCEECTTSC-EEEECT
T ss_pred --EEEccCCcceeceEECCCCeE-EEEcCCC---eEEEECC-CCC------EeEEeeCCCCccccceEcCCCe-EEEecC
Confidence 222223455777888877754 4455555 6777763 222 222222 22345566666775 455555
Q ss_pred cCCCceEEEEECCcceeeee--ccccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 533 KGFNGQLEFYNVDELETMAT--AEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 533 ~~~dg~v~iwd~~~~~~~~~--~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
+|.|..+|. +++.+.. .....+.++..+++|+. ..++. +|.+.+....
T Consensus 274 ---~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l-~~gt~-----~G~~~~~~~~ 323 (330)
T 3hxj_A 274 ---DGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTI-YFGTR-----NGKFYALFNL 323 (330)
T ss_dssp ---TCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCE-EEECT-----TSCEEEEEC-
T ss_pred ---CCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEE-EEEcC-----CCeEEEEecc
Confidence 788999996 4555443 23456677888888874 45666 6777776543
No 454
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.44 E-value=2.6e-05 Score=87.46 Aligned_cols=317 Identities=8% Similarity=0.058 Sum_probs=167.0
Q ss_pred CCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccc-cCC-CCCcCCCCcCeEEecCCCCCEEEEec-CCe
Q 005140 265 EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFA-VGG-TGGVAGVSWPVFRWGGGKDKYFAKLG-KNM 341 (712)
Q Consensus 265 g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~s~~dg~~la~~~-d~~ 341 (712)
+..|++++.+ +.|..+|..+|+.+-.+........ ... +..+.. .+.. ++..++.++ ++.
T Consensus 70 ~g~vyv~~~~----------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~----~~~~---~~g~v~v~~~dg~ 132 (689)
T 1yiq_A 70 DGVMYTTGPF----------SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNR----GVAV---WKGKVYVGVLDGR 132 (689)
T ss_dssp TTEEEEECGG----------GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCC----CCEE---ETTEEEEECTTSE
T ss_pred CCEEEEEcCC----------CeEEEEECCCCceeEEEcCCCCccccccccccCCCC----ccEE---ECCEEEEEccCCE
Confidence 5566777777 7899999999999888765432110 000 000000 1222 234455555 999
Q ss_pred EEEEEcCCceeccccccc--ccCeeeEEECC---CCCeEEEEeecCCCCC----CCeEEEEEecCCccceeeeeee----
Q 005140 342 ISVYETESFTLIDKKSLK--VENVMDFSWSP---TDPIISLFVPELGGGN----QPARVSLVQIPSKEELRQKNLF---- 408 (712)
Q Consensus 342 i~iwd~~~~~~~~~~~~~--~~~v~~~~~sp---~~~~la~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~---- 408 (712)
|..+|..+|+.+...... ......+..+| ++ .+++ ++.. ....|+-++..+.+.+-.....
T Consensus 133 l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~v-----g~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p 206 (689)
T 1yiq_A 133 LEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVI-----GNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDP 206 (689)
T ss_dssp EEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEE-----CCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCT
T ss_pred EEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEE-----EeCCCccCCCCEEEEEECCCCcEEEEecccCCCc
Confidence 999999999987655432 11111222233 33 3333 2211 2456777776665533221100
Q ss_pred ---------------------------eecceeEEECcCCCEEEEEEccccc---------ccccccccEEEEEEecC-C
Q 005140 409 ---------------------------SVSDCKMYWQSSGDYLAVKVDRYTK---------TKKSTYTGFELFRIKER-D 451 (712)
Q Consensus 409 ---------------------------~~~~~~~~~s~~g~~l~~~~~~~~~---------~~~~~~~~~~l~~l~~~-~ 451 (712)
...-..+.++|++..+++++.+... .+...|.. .++-++.. +
T Consensus 207 ~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~-~v~AlD~~TG 285 (689)
T 1yiq_A 207 KLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLS-SIVAVNADTG 285 (689)
T ss_dssp TSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTT-EEEEEETTTC
T ss_pred ccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeee-eEEEEEccCC
Confidence 0000134667888888887765420 00001111 23333332 2
Q ss_pred cceeEEEecCCC-------CceEEEEEeeCCC---EEEEEEcCCCCCeEEEEEeecccccCcee-----EEEE-------
Q 005140 452 IPIEVLELDNKN-------DKIIAFAWEPKGH---RFAVIHGDSPRPDISFYSMRTAQHAGRVS-----KLTT------- 509 (712)
Q Consensus 452 ~~~~~~~l~~h~-------~~v~~~~~sp~g~---~l~~~~~d~~~~~v~i~d~~~~~~~~~~~-----~~~~------- 509 (712)
...-......|. .++.......+|+ .++.++.++ .++++|..+++...... -...
T Consensus 286 ~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G---~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~ 362 (689)
T 1yiq_A 286 EYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNG---FFYVIDRATGELLSAKGIVPQSWTKGMDMKTGR 362 (689)
T ss_dssp CEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTS---EEEEEETTTCCEEEEEESSCCSSEEEEETTTTE
T ss_pred ceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCC---eEEEEECCCCCEeccccccccccccccCccCCC
Confidence 222222222222 1222223333665 677777777 89999987765310000 0000
Q ss_pred -------------------eC----CCceeEEEEccCCCeEEEEecc---------------------------------
Q 005140 510 -------------------LK----GKQANALFWSPSGRFIVLAGLK--------------------------------- 533 (712)
Q Consensus 510 -------------------~~----~~~v~~l~~spdg~~l~~~~~~--------------------------------- 533 (712)
.+ ++.-..++++|+...+++....
T Consensus 363 pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~ 442 (689)
T 1yiq_A 363 PILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEG 442 (689)
T ss_dssp EEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSS
T ss_pred cccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcc
Confidence 00 0011237899988887775321
Q ss_pred ---------CCCceEEEEECCcceeeeecc-ccceeeEEECCCCCEEEEEEccceeccccEEEEEec-Cceeeeeccc--
Q 005140 534 ---------GFNGQLEFYNVDELETMATAE-HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRTLKD-- 600 (712)
Q Consensus 534 ---------~~dg~v~iwd~~~~~~~~~~~-~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~~~~-- 600 (712)
..+|.|..||+.+++.+-+.. ........++..|..|++++. |+.++.||.. |+.+.+....
T Consensus 443 ~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~-----dg~l~a~D~~tG~~lw~~~~~~~ 517 (689)
T 1yiq_A 443 AEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSA-----DGRVIAYAADTGEKLWEQPAASG 517 (689)
T ss_dssp HHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECT-----TSEEEEEETTTCCEEEEEECSSC
T ss_pred cccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECC-----CCcEEEEECCCCccceeeeCCCC
Confidence 014889999999999876533 233444567778888889888 9999999976 7777555321
Q ss_pred -ceeeeEEecCCCC
Q 005140 601 -HFFQFLWRPRPPS 613 (712)
Q Consensus 601 -~i~~~~w~p~~~~ 613 (712)
...-+.|..+|+.
T Consensus 518 ~~~~p~ty~~~G~q 531 (689)
T 1yiq_A 518 VMAAPVTYSVDGEQ 531 (689)
T ss_dssp CCSCCEEEEETTEE
T ss_pred cccCceEEEECCEE
Confidence 1223556666653
No 455
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.42 E-value=3e-05 Score=73.77 Aligned_cols=180 Identities=12% Similarity=0.140 Sum_probs=120.6
Q ss_pred ceEEEcCCCcEEEEEecCc---eEEeecccCcceeeeecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEc
Q 005140 217 SFVQWSPLGTYLATVHRQG---AAVWGGANTFNRLMRYAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDV 292 (712)
Q Consensus 217 ~~v~~Spdg~~lat~~~~~---i~iw~~~~~~~~~~~~~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~ 292 (712)
..+.|+ +|.+..+.+.+| |+++|.. +++.+.+...+. .......+++..|....... +.+.+||.
T Consensus 46 qGL~~~-~~~LyestG~~g~S~v~~vD~~-Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~---------~~v~v~D~ 114 (262)
T 3nol_A 46 EGFFYR-NGYFYESTGLNGRSSIRKVDIE-SGKTLQQIELGKRYFGEGISDWKDKIVGLTWKN---------GLGFVWNI 114 (262)
T ss_dssp EEEEEE-TTEEEEEEEETTEEEEEEECTT-TCCEEEEEECCTTCCEEEEEEETTEEEEEESSS---------SEEEEEET
T ss_pred ceEEEE-CCEEEEECCCCCCceEEEEECC-CCcEEEEEecCCccceeEEEEeCCEEEEEEeeC---------CEEEEEEC
Confidence 568898 777777776654 8899999 888888776443 44444444566666555431 78999999
Q ss_pred cCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccc-----cCeeeE
Q 005140 293 RTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKV-----ENVMDF 366 (712)
Q Consensus 293 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~-----~~v~~~ 366 (712)
.+++.+.++...... |. ++ + |++.|+.+. ++.|.++|..+++.+....... ..++.+
T Consensus 115 ~t~~~~~ti~~~~eG-------------~g-lt--~-dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNEL 177 (262)
T 3nol_A 115 RNLRQVRSFNYDGEG-------------WG-LT--H-NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNEL 177 (262)
T ss_dssp TTCCEEEEEECSSCC-------------CC-EE--E-CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEE
T ss_pred ccCcEEEEEECCCCc-------------eE-Ee--c-CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcccccccee
Confidence 999999999865422 32 44 4 677666555 8889999999988776554422 335667
Q ss_pred EECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeee------------ecceeEEECcCCCEEEEEEcccc
Q 005140 367 SWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFS------------VSDCKMYWQSSGDYLAVKVDRYT 432 (712)
Q Consensus 367 ~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------------~~~~~~~~s~~g~~l~~~~~~~~ 432 (712)
.|. +|...+. .-....|..+|..+.+.+....+.. .....++|+|+++.|++......
T Consensus 178 e~~-~G~lyan-------~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp 247 (262)
T 3nol_A 178 EWV-DGEIFAN-------VWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWP 247 (262)
T ss_dssp EEE-TTEEEEE-------ETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCS
T ss_pred EEE-CCEEEEE-------EccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCC
Confidence 886 5654332 2233478888888877655544321 11235789999999988877655
No 456
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.28 E-value=0.00096 Score=66.59 Aligned_cols=223 Identities=8% Similarity=-0.032 Sum_probs=121.8
Q ss_pred eEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccc
Q 005140 323 VFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE 401 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~ 401 (712)
.++|++ +++++++.. ++.|..|+.... ..... ........++++|+|+++++ .......+|+.++..+.+.
T Consensus 36 gia~~~-~g~lyv~d~~~~~I~~~d~~g~-~~~~~-~~~~~p~gia~~~dG~l~va-----d~~~~~~~v~~~d~~~g~~ 107 (306)
T 2p4o_A 36 NLASAP-DGTIFVTNHEVGEIVSITPDGN-QQIHA-TVEGKVSGLAFTSNGDLVAT-----GWNADSIPVVSLVKSDGTV 107 (306)
T ss_dssp EEEECT-TSCEEEEETTTTEEEEECTTCC-EEEEE-ECSSEEEEEEECTTSCEEEE-----EECTTSCEEEEEECTTSCE
T ss_pred eEEECC-CCCEEEEeCCCCeEEEECCCCc-eEEEE-eCCCCceeEEEcCCCcEEEE-----eccCCcceEEEEcCCCCeE
Confidence 589999 998777665 889999987643 22111 11234788999999986554 2122334677777655442
Q ss_pred eeeeeeeee-cceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEE---------ecCCCCceEEEEE
Q 005140 402 LRQKNLFSV-SDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLE---------LDNKNDKIIAFAW 471 (712)
Q Consensus 402 ~~~~~~~~~-~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~---------l~~h~~~v~~~~~ 471 (712)
......... ....+...+++ .+++..... -.+|.++.......... ....-.....+
T Consensus 108 ~~~~~~~~~~~~~g~~~~~~~-~~~v~d~~~----------g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi-- 174 (306)
T 2p4o_A 108 ETLLTLPDAIFLNGITPLSDT-QYLTADSYR----------GAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL-- 174 (306)
T ss_dssp EEEEECTTCSCEEEEEESSSS-EEEEEETTT----------TEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--
T ss_pred EEEEeCCCccccCcccccCCC-cEEEEECCC----------CeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--
Confidence 211111000 00011112233 333322111 14555554321101110 00111234445
Q ss_pred eeCCCEEEEEEcCCCCCeEEEEEeec-ccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCccee-
Q 005140 472 EPKGHRFAVIHGDSPRPDISFYSMRT-AQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET- 549 (712)
Q Consensus 472 sp~g~~l~~~~~d~~~~~v~i~d~~~-~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~- 549 (712)
+|++++|+++.... ..|..|++.. +.. .....+..+ .....++++++|+++++... .+.|.+++.. ++.
T Consensus 175 s~dg~~lyv~d~~~--~~I~~~~~~~~g~~-~~~~~~~~~--~~P~gi~vd~dG~l~va~~~---~~~V~~~~~~-G~~~ 245 (306)
T 2p4o_A 175 KRFGNFLYVSNTEK--MLLLRIPVDSTDKP-GEPEIFVEQ--TNIDDFAFDVEGNLYGATHI---YNSVVRIAPD-RSTT 245 (306)
T ss_dssp EEETTEEEEEETTT--TEEEEEEBCTTSCB-CCCEEEEES--CCCSSEEEBTTCCEEEECBT---TCCEEEECTT-CCEE
T ss_pred CcCCCEEEEEeCCC--CEEEEEEeCCCCCC-CccEEEecc--CCCCCeEECCCCCEEEEeCC---CCeEEEECCC-CCEE
Confidence 89998888776643 2899999864 211 111222222 34577999999987665544 6889999986 444
Q ss_pred -eeec--cccceeeEEEC---CCCCEEEEEEc
Q 005140 550 -MATA--EHFMATDVEWD---PTGRYVATAVT 575 (712)
Q Consensus 550 -~~~~--~~~~v~~~~~s---pdg~~l~t~s~ 575 (712)
+... .....++++|. |+++.|+.++.
T Consensus 246 ~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 246 IIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp EEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred EEeecccccCCceEEEEecccCCCCEEEEECC
Confidence 2222 22568899999 89888777765
No 457
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.25 E-value=9.4e-05 Score=70.34 Aligned_cols=179 Identities=9% Similarity=0.063 Sum_probs=116.0
Q ss_pred ceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC
Q 005140 217 SFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT 294 (712)
Q Consensus 217 ~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~ 294 (712)
..+.|+ ++.+..+.+.++ |.++|.. +++.+.+. .+. .......++|+.|....... +.+.+||..+
T Consensus 58 qGL~~~-~~~Ly~stG~~g~v~~iD~~-Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~---------~~v~V~D~~T 125 (268)
T 3nok_A 58 QGLVFH-QGHFFESTGHQGTLRQLSLE-SAQPVWME-RLGNIFAEGLASDGERLYQLTWTE---------GLLFTWSGMP 125 (268)
T ss_dssp EEEEEE-TTEEEEEETTTTEEEECCSS-CSSCSEEE-ECTTCCEEEEEECSSCEEEEESSS---------CEEEEEETTT
T ss_pred ceEEEE-CCEEEEEcCCCCEEEEEECC-CCcEEeEE-CCCCcceeEEEEeCCEEEEEEccC---------CEEEEEECCc
Confidence 457887 356666666666 8899999 78777666 333 43333334555554444321 6899999999
Q ss_pred CceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccc-----cCeeeEEE
Q 005140 295 GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKV-----ENVMDFSW 368 (712)
Q Consensus 295 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~ 368 (712)
++.+.++...... | .++ + |++.|+.+. ++.|.++|..+++.+....... ..++.+.|
T Consensus 126 l~~~~ti~~~~eG-------------w-GLt--~-Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~ 188 (268)
T 3nok_A 126 PQRERTTRYSGEG-------------W-GLC--Y-WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELEC 188 (268)
T ss_dssp TEEEEEEECSSCC-------------C-CEE--E-ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred CcEEEEEeCCCce-------------e-EEe--c-CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEE
Confidence 9999999864322 3 244 4 677666666 8999999999988776554422 23567788
Q ss_pred CCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeee-------------ecceeEEECcCCCEEEEEEcccc
Q 005140 369 SPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFS-------------VSDCKMYWQSSGDYLAVKVDRYT 432 (712)
Q Consensus 369 sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-------------~~~~~~~~s~~g~~l~~~~~~~~ 432 (712)
. +|...+. .-....|..+|..+.+.+....+.. .....++|+|+++.|++......
T Consensus 189 ~-dG~lyan-------vw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp 257 (268)
T 3nok_A 189 A-NGVIYAN-------IWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWP 257 (268)
T ss_dssp E-TTEEEEE-------ETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCS
T ss_pred e-CCEEEEE-------ECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCC
Confidence 7 6653332 2223478888888887665544321 11235789999988888766554
No 458
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.24 E-value=1.3e-06 Score=90.30 Aligned_cols=202 Identities=11% Similarity=0.071 Sum_probs=99.2
Q ss_pred CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeE
Q 005140 264 GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMI 342 (712)
Q Consensus 264 dg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i 342 (712)
++..|++++.+ +.|..||..+|+.+..+.. . .+. +..+.. ++..+++++ ++.|
T Consensus 8 ~~~~v~~gs~d----------g~v~a~d~~tG~~~W~~~~-~-~~~-------------s~p~~~-~g~~~v~~s~dg~l 61 (369)
T 2hz6_A 8 PETLLFVSTLD----------GSLHAVSKRTGSIKWTLKE-D-PVL-------------QVPTHV-EEPAFLPDPNDGSL 61 (369)
T ss_dssp CTTEEEEEETT----------SEEEEEETTTCCEEEEEEC-C-CSC-------------CCC------CCEEECTTTCCE
T ss_pred eCCEEEEEcCC----------CEEEEEECCCCCEEEEecC-C-Cce-------------ecceEc-CCCEEEEeCCCCEE
Confidence 57889999998 8999999999999888776 2 220 123445 777777655 9999
Q ss_pred EEEEcCCceecccccccccC-ee-eEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcC
Q 005140 343 SVYETESFTLIDKKSLKVEN-VM-DFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSS 420 (712)
Q Consensus 343 ~iwd~~~~~~~~~~~~~~~~-v~-~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 420 (712)
..||..+++.+.....+... +. ...++ .+..|++ + .....++.++..+++
T Consensus 62 ~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~-----g--~~dg~v~a~D~~tG~-------------------- 113 (369)
T 2hz6_A 62 YTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYM-----G--KKQDIWYVIDLLTGE-------------------- 113 (369)
T ss_dssp EEC-----CCSEECSCCHHHHHTTCSCC------CCC-----C--EEEEEEEEECCC-----------------------
T ss_pred EEEECCCCceeeeeeccCccccccCceEe-cCCEEEE-----E--eCCCEEEEEECCCCc--------------------
Confidence 99999888765443332211 10 00111 2222322 1 112233333322211
Q ss_pred CCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccc
Q 005140 421 GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQH 500 (712)
Q Consensus 421 g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~ 500 (712)
.+|.+... . ...++|++..+++++.++ .|..||..++..
T Consensus 114 ----------------------~~w~~~~~------------~----~~~~~p~~~~v~~~~~dg---~v~a~d~~tG~~ 152 (369)
T 2hz6_A 114 ----------------------KQQTLSSA------------F----ADSLSPSTSLLYLGRTEY---TITMYDTKTREL 152 (369)
T ss_dssp ---------------------------------------------------------EEEEEEEE---EEECCCSSSSSC
T ss_pred ----------------------EEEEecCC------------C----cccccccCCEEEEEecCC---EEEEEECCCCCE
Confidence 12222110 0 123456778888888877 899999877653
Q ss_pred cCceeEEEEeCCCceeEEEEccCC---CeEEEEeccCCCceEEEEECCcceeeeecc-ccc-eeeEEECCCCCE
Q 005140 501 AGRVSKLTTLKGKQANALFWSPSG---RFIVLAGLKGFNGQLEFYNVDELETMATAE-HFM-ATDVEWDPTGRY 569 (712)
Q Consensus 501 ~~~~~~~~~~~~~~v~~l~~spdg---~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~-~~~-v~~~~~spdg~~ 569 (712)
..... . .....+++++++ ..+++++. +|.|+.||..+++.+-... ..+ +....++++|..
T Consensus 153 ~W~~~----~--~~~~~~~~~~~~~~~~~v~~~~~---dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~ 217 (369)
T 2hz6_A 153 RWNAT----Y--FDYAASLPEDDVDYKMSHFVSNG---DGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLR 217 (369)
T ss_dssp CCEEE----E--EEECCBCCCCCTTCCCCEEEEET---SCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCE
T ss_pred EEeEe----c--ccccCccccCCccccceEEEECC---CCEEEEEECCCCcEEEEecCCCceEEEEEecCCceE
Confidence 21111 1 112233344432 45666666 8999999999988876532 223 334567777753
No 459
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.22 E-value=0.00031 Score=66.24 Aligned_cols=180 Identities=12% Similarity=0.124 Sum_probs=116.7
Q ss_pred ceEEEcCCCcEEEEEecC---ceEEeecccCcceeeeecCCC-eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEc
Q 005140 217 SFVQWSPLGTYLATVHRQ---GAAVWGGANTFNRLMRYAHPQ-VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDV 292 (712)
Q Consensus 217 ~~v~~Spdg~~lat~~~~---~i~iw~~~~~~~~~~~~~~~~-v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~ 292 (712)
..+.|++ +.+..+.+.. .|.++|.. +++.+.+...+. .......++++.|....... +.+.+||.
T Consensus 24 qGL~~~~-~~LyestG~~g~S~v~~vD~~-tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~---------~~v~v~D~ 92 (243)
T 3mbr_X 24 EGLFYLR-GHLYESTGETGRSSVRKVDLE-TGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRN---------HEGFVYDL 92 (243)
T ss_dssp EEEEEET-TEEEEEECCTTSCEEEEEETT-TCCEEEEEECCTTCCEEEEEEETTEEEEEESSS---------SEEEEEET
T ss_pred ccEEEEC-CEEEEECCCCCCceEEEEECC-CCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeC---------CEEEEEEC
Confidence 4688987 6666666654 38899999 888888776443 44343444455555554331 78999999
Q ss_pred cCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCceecccccccc-----cCeeeE
Q 005140 293 RTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKKSLKV-----ENVMDF 366 (712)
Q Consensus 293 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~~~~~-----~~v~~~ 366 (712)
.+.+.+.++...... | .++ + +++.|+.+. ++.|.++|..+++.+....... ..++.+
T Consensus 93 ~tl~~~~ti~~~~~G-------------w-glt--~-dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeL 155 (243)
T 3mbr_X 93 ATLTPRARFRYPGEG-------------W-ALT--S-DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNEL 155 (243)
T ss_dssp TTTEEEEEEECSSCC-------------C-EEE--E-CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred CcCcEEEEEeCCCCc-------------e-EEe--e-CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceee
Confidence 999999999865432 3 344 4 666555444 8999999999988776554432 345667
Q ss_pred EECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeee-------------ecceeEEECcCCCEEEEEEcccc
Q 005140 367 SWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFS-------------VSDCKMYWQSSGDYLAVKVDRYT 432 (712)
Q Consensus 367 ~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-------------~~~~~~~~s~~g~~l~~~~~~~~ 432 (712)
.|. +|...+- .-..-.|..+|..+.+.+....+.. .....++|+|+++.|++......
T Consensus 156 e~~-~G~lyan-------vw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp 226 (243)
T 3mbr_X 156 EWV-NGELLAN-------VWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWP 226 (243)
T ss_dssp EEE-TTEEEEE-------ETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCS
T ss_pred EEe-CCEEEEE-------ECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCC
Confidence 776 5554332 1123367788888877655443221 01134789999998888877655
No 460
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.16 E-value=0.0022 Score=73.34 Aligned_cols=343 Identities=10% Similarity=0.073 Sum_probs=175.7
Q ss_pred cccceEEEcCCCcEEEEEecCceEEeecccCcceeee---------ecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCc
Q 005140 214 WTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMR---------YAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANR 284 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~---------~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~ 284 (712)
..|.++...++|.+.+.....|+..|+.. +.....- +....|.++...++|...+.. ..
T Consensus 163 ~~i~~i~~d~~g~lwigt~~~Gl~~~~~~-~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt-~~---------- 230 (781)
T 3v9f_A 163 EQTWTATEAEDGKLYIGHVEGGLSILSLN-DKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGT-SK---------- 230 (781)
T ss_dssp CCEEEEEEEETTEEEEEETTTEEEEEETT-TTEEEEECC--------CCSSEEEEEECTTCCEEEEE-TT----------
T ss_pred cceEEEEECCCCCEEEEecCCCeEEEcCC-CCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEe-CC----------
Confidence 45778888888987775555589999887 4322111 112348899998888866643 33
Q ss_pred cEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceeccc---------
Q 005140 285 VVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDK--------- 355 (712)
Q Consensus 285 ~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~~--------- 355 (712)
-|.+||..+++.. .+........ ...... ..++...+ +|.+.+....+.|.+++..+......
T Consensus 231 -Gl~~~d~~~~~~~-~~~~~~~~~~----~l~~~~-i~~i~~d~-~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~ 302 (781)
T 3v9f_A 231 -GLALFNANTETFT-NFHNNPGNIH----GALSSY-IFSIKQLK-DNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIR 302 (781)
T ss_dssp -EEEEEETTTTEEE-C---------------CCCC-EEEEEECT-TSEEEEEESSSCEEEEETTCC---------CEEEC
T ss_pred -cHheECCCCCcEE-EEEcCCCccc----cccCce-EEEEEECC-CCCEEEEeCCCCeEEECCCCCeeeeeecccccccc
Confidence 3888997665533 2221110000 000000 11456666 77766554457788888776543211
Q ss_pred -----ccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCcc--ceee-------eeeeeecceeEEECcCC
Q 005140 356 -----KSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKE--ELRQ-------KNLFSVSDCKMYWQSSG 421 (712)
Q Consensus 356 -----~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~--~~~~-------~~~~~~~~~~~~~s~~g 421 (712)
..+....|.++...++|.+-+. +.++. |..++..... .+.. ..+.......+...++|
T Consensus 303 ~~~~~~~l~~~~v~~i~~D~~g~lWig------t~~~G--l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g 374 (781)
T 3v9f_A 303 EGDNNYSLSNASARYIFQDSFNNIWIG------TWGGG--INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQG 374 (781)
T ss_dssp BCSSTTSBSSSCEEEEEECSSCCEEEE------EBSSC--EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTS
T ss_pred CCCCCCCCCCCeEEEEEEeCCCCEEEE------ecCCe--EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCC
Confidence 1123345888888887764442 22222 3344433221 1110 01111222334445555
Q ss_pred CEEEEEEcccccccccccccEEEEEEecCCcceeEEE--ecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeeccc
Q 005140 422 DYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLE--LDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQ 499 (712)
Q Consensus 422 ~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~ 499 (712)
. |.+++..+. +..++ .......... .......|.+++..++|...+ ++..+ -|..|+..++.
T Consensus 375 ~-lWigt~~~G---------l~~~~--~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~---Gl~~~~~~~~~ 438 (781)
T 3v9f_A 375 K-LWIGTDGGG---------INVFE--NGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLG---NISYYNTRLKK 438 (781)
T ss_dssp C-EEEEEBSSC---------EEEEE--TTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTE---EEEEECSSSCE
T ss_pred C-EEEEeCCCc---------EEEEE--CCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccC---CEEEEcCCCCc
Confidence 4 334443222 22222 1111100000 011246788888877776555 55444 57778765432
Q ss_pred ccCceeEEE--EeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee--cc-----ccceeeEEECCCCCEE
Q 005140 500 HAGRVSKLT--TLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT--AE-----HFMATDVEWDPTGRYV 570 (712)
Q Consensus 500 ~~~~~~~~~--~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~--~~-----~~~v~~~~~spdg~~l 570 (712)
. ..+. .+....|.++...++|+..+ ++ .+.|..|+..+++.... .. ...|.++..+++|+..
T Consensus 439 ~----~~~~~~~~~~~~v~~i~~d~~g~lwi-gt----~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW 509 (781)
T 3v9f_A 439 F----QIIELEKNELLDVRVFYEDKNKKIWI-GT----HAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFW 509 (781)
T ss_dssp E----EECCSTTTCCCCEEEEEECTTSEEEE-EE----TTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEE
T ss_pred E----EEeccCCCCCCeEEEEEECCCCCEEE-EE----CCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEE
Confidence 1 1111 11234688888888886544 44 34588899876544322 11 3568899999999855
Q ss_pred EEEEccceeccccEEEEEecCceeeee------cccceeeeEEecCCCCCC
Q 005140 571 ATAVTSVHEMENGFNIWSFNGKLLYRT------LKDHFFQFLWRPRPPSFL 615 (712)
Q Consensus 571 ~t~s~~~~~~d~~v~iw~~~g~~~~~~------~~~~i~~~~w~p~~~~l~ 615 (712)
+ ++. .+++..|+..+..+... ....|.++...+++...+
T Consensus 510 i-gt~-----~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi 554 (781)
T 3v9f_A 510 I-GTF-----GGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWL 554 (781)
T ss_dssp E-EES-----SSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEE
T ss_pred E-EEc-----CCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEE
Confidence 4 443 35677777654433322 124567777777766444
No 461
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.16 E-value=0.00093 Score=66.68 Aligned_cols=228 Identities=10% Similarity=0.070 Sum_probs=120.8
Q ss_pred cceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCC-CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEcc
Q 005140 216 ESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHP-QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVR 293 (712)
Q Consensus 216 v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~-~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~ 293 (712)
...++|+|+|+++++-..++ |..|+..+. ....+... .+..++++|+|+.+++.... ....|..++..
T Consensus 34 pegia~~~~g~lyv~d~~~~~I~~~d~~g~--~~~~~~~~~~p~gia~~~dG~l~vad~~~--------~~~~v~~~d~~ 103 (306)
T 2p4o_A 34 LENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNA--------DSIPVVSLVKS 103 (306)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECT--------TSCEEEEEECT
T ss_pred cceEEECCCCCEEEEeCCCCeEEEECCCCc--eEEEEeCCCCceeEEEcCCCcEEEEeccC--------CcceEEEEcCC
Confidence 34689999999666665555 888888732 22223323 48899999999966654332 00246677777
Q ss_pred CCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec-CCeEEEEEcCCc--eec--cc------ccccccC
Q 005140 294 TGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-KNMISVYETESF--TLI--DK------KSLKVEN 362 (712)
Q Consensus 294 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-d~~i~iwd~~~~--~~~--~~------~~~~~~~ 362 (712)
+|+............ .. .++..+ ++..+++-. ++.|.+++..++ +.. .. .......
T Consensus 104 ~g~~~~~~~~~~~~~-------~~-----g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~ 170 (306)
T 2p4o_A 104 DGTVETLLTLPDAIF-------LN-----GITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA 170 (306)
T ss_dssp TSCEEEEEECTTCSC-------EE-----EEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred CCeEEEEEeCCCccc-------cC-----cccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCc
Confidence 777533222111110 01 233345 555555554 888888887653 221 00 0011123
Q ss_pred eeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeee-e-ecceeEEECcCCCEEEEEEcccccccccccc
Q 005140 363 VMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLF-S-VSDCKMYWQSSGDYLAVKVDRYTKTKKSTYT 440 (712)
Q Consensus 363 v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~-~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~ 440 (712)
...+ +|++..|.+. .....+|+.++......+.....+ . .....++++++|...++....+
T Consensus 171 pngi--s~dg~~lyv~------d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~--------- 233 (306)
T 2p4o_A 171 ANGL--KRFGNFLYVS------NTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYN--------- 233 (306)
T ss_dssp EEEE--EEETTEEEEE------ETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTC---------
T ss_pred CCCc--CcCCCEEEEE------eCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCCC---------
Confidence 4555 7888776652 233456777776531111111111 1 1234467788997544332222
Q ss_pred cEEEEEEecCCcceeEEEecCCCCceEEEEEe---eCCCEEEEEEcCC
Q 005140 441 GFELFRIKERDIPIEVLELDNKNDKIIAFAWE---PKGHRFAVIHGDS 485 (712)
Q Consensus 441 ~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~s---p~g~~l~~~~~d~ 485 (712)
.+..++..+.......+...-...++++|. |+++.|+++...+
T Consensus 234 --~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 234 --SVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp --CEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred --eEEEECCCCCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 233444333221111222223568899998 8988888777643
No 462
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.09 E-value=0.0016 Score=67.09 Aligned_cols=284 Identities=11% Similarity=0.023 Sum_probs=137.0
Q ss_pred CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEE
Q 005140 264 GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMIS 343 (712)
Q Consensus 264 dg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~ 343 (712)
++..|++++.+ +.|..+|..+|+.+..+............ ...+ ...+.. . ++..++...++.|.
T Consensus 52 ~~~~v~~~~~~----------g~v~a~d~~tG~~~W~~~~~~~~~~~~~~--~~~~-~~~~~~-~-~~~v~v~~~~g~l~ 116 (376)
T 3q7m_A 52 ADNVVYAADRA----------GLVKALNADDGKEIWSVSLAEKDGWFSKE--PALL-SGGVTV-S-GGHVYIGSEKAQVY 116 (376)
T ss_dssp ETTEEEEECTT----------SEEEEEETTTCCEEEEEECCC---CCSCC--CCCE-EEEEEE-E-TTEEEEEETTSEEE
T ss_pred ECCEEEEEcCC----------CeEEEEEccCCceeeeecCcccccccccc--Cccc-ccCceE-e-CCEEEEEcCCCEEE
Confidence 35677777777 78999999999987766543211000000 0000 001222 2 44444444489999
Q ss_pred EEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeec-----ceeEEEC
Q 005140 344 VYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVS-----DCKMYWQ 418 (712)
Q Consensus 344 iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~s 418 (712)
.+|..+++.+................ +..+++ ++. ...++.++..+.+.+-........ ...+..
T Consensus 117 a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v-----~~~--~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~- 186 (376)
T 3q7m_A 117 ALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLI-----HTS--NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT- 186 (376)
T ss_dssp EEETTTCCEEEEEECSSCCCSCCEEE--TTEEEE-----ECT--TSEEEEEETTTCCEEEEEECCC-----CCCCCCEE-
T ss_pred EEECCCCCEEEEEeCCCceEcCCEEE--CCEEEE-----EcC--CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE-
Confidence 99999998776543332211111221 234443 222 335666776655543322211100 001111
Q ss_pred cCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecc
Q 005140 419 SSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTA 498 (712)
Q Consensus 419 ~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~ 498 (712)
.+..++++..++........+...+|......... ...+..-......... .+..+++++.++ .|..+|..++
T Consensus 187 -~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~-~~~~~~~~~~~~~p~~--~~~~v~~~~~~g---~l~~~d~~tG 259 (376)
T 3q7m_A 187 -AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATG-STEIDRLSDVDTTPVV--VNGVVFALAYNG---NLTALDLRSG 259 (376)
T ss_dssp -ETTEEEECCTTTEEEEEETTTCCEEEEEECCC------------CCCCCCEE--ETTEEEEECTTS---CEEEEETTTC
T ss_pred -ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCC-CcccccccccCCCcEE--ECCEEEEEecCc---EEEEEECCCC
Confidence 12344444333221111111122344433211000 0000000000001111 345666766666 7888998766
Q ss_pred cccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeecc---ccceeeEEECCCCCEEEEEEc
Q 005140 499 QHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE---HFMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 499 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~---~~~v~~~~~spdg~~l~t~s~ 575 (712)
. .+..........+.. ++..+++++. ++.|..+|..+++.+-... ...+..+.. .+..|+.++.
T Consensus 260 ~------~~w~~~~~~~~~~~~--~~~~l~~~~~---~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~ 326 (376)
T 3q7m_A 260 Q------IMWKRELGSVNDFIV--DGNRIYLVDQ---NDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDS 326 (376)
T ss_dssp C------EEEEECCCCEEEEEE--ETTEEEEEET---TCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECT
T ss_pred c------EEeeccCCCCCCceE--ECCEEEEEcC---CCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeC
Confidence 5 333333333333333 4667777776 8999999999988765432 222333333 2567788887
Q ss_pred cceeccccEEEEEec-Cceeeee
Q 005140 576 SVHEMENGFNIWSFN-GKLLYRT 597 (712)
Q Consensus 576 ~~~~~d~~v~iw~~~-g~~~~~~ 597 (712)
++.+.+++.. |+.+...
T Consensus 327 -----~g~l~~~d~~tG~~~~~~ 344 (376)
T 3q7m_A 327 -----EGYLHWINVEDGRFVAQQ 344 (376)
T ss_dssp -----TSEEEEEETTTCCEEEEE
T ss_pred -----CCeEEEEECCCCcEEEEE
Confidence 7889999965 6555443
No 463
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.07 E-value=0.009 Score=68.19 Aligned_cols=343 Identities=10% Similarity=0.006 Sum_probs=176.0
Q ss_pred cccceEEEcCCCcEEEEEecCceEEeecccCcceeee---------ecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCc
Q 005140 214 WTESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMR---------YAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANR 284 (712)
Q Consensus 214 ~~v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~---------~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~ 284 (712)
..|.++...++|.+.+.... |+.+|+.. +.....- +....|.++...++|.+.+.....
T Consensus 211 ~~i~~i~~d~~g~lwigt~~-Gl~~~d~~-~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~---------- 278 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIGTSK-GLALFNAN-TETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELN---------- 278 (781)
T ss_dssp SSEEEEEECTTCCEEEEETT-EEEEEETT-TTEEEC-----------CCCCEEEEEECTTSEEEEEESSS----------
T ss_pred CceeEEEEcCCCCEEEEeCC-cHheECCC-CCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCC----------
Confidence 45788999999987766544 89999976 3322111 123349999999888866544324
Q ss_pred cEEEEEEccCCceeeecc-------CCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEecCCeEEEEEcCCceecc---
Q 005140 285 VVINIFDVRTGKVMRDFK-------GSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLID--- 354 (712)
Q Consensus 285 ~~I~iwd~~~g~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~d~~i~iwd~~~~~~~~--- 354 (712)
-|.++|..++....... ...... ....-...++...+ +|.+-+...++-|..|+..+.....
T Consensus 279 -Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~------~l~~~~v~~i~~D~-~g~lWigt~~~Gl~~~~~~~~~~~~~~~ 350 (781)
T 3v9f_A 279 -GIMILDLQQNQFLLPEQIRFEFIREGDNNY------SLSNASARYIFQDS-FNNIWIGTWGGGINFISNAPPTFHTWSY 350 (781)
T ss_dssp -CEEEEETTCC---------CEEECBCSSTT------SBSSSCEEEEEECS-SCCEEEEEBSSCEEEECSSCCSCEEEC-
T ss_pred -CeEEECCCCCeeeeeeccccccccCCCCCC------CCCCCeEEEEEEeC-CCCEEEEecCCeEEEeCCCCCcceeecc
Confidence 37888876654322111 000000 00000001456666 7766555547778888876433211
Q ss_pred ------cccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceee---eeeeeecceeEEECcCCCEEE
Q 005140 355 ------KKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQ---KNLFSVSDCKMYWQSSGDYLA 425 (712)
Q Consensus 355 ------~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~s~~g~~l~ 425 (712)
...+....|.++...++|.+.+. +.++. |..++..+...... ..+.......+...++|...
T Consensus 351 ~~~~~~~~~l~~~~v~~i~~d~~g~lWig------t~~~G--l~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lW- 421 (781)
T 3v9f_A 351 SPTQMNESSLSNKVVSSVCDDGQGKLWIG------TDGGG--INVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLW- 421 (781)
T ss_dssp ---CCCSSCCSSSCEEEEEECTTSCEEEE------EBSSC--EEEEETTEEEEECC-----CCCSBEEEEEECTTSCEE-
T ss_pred CccccccCCCCCcceEEEEEcCCCCEEEE------eCCCc--EEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEE-
Confidence 11122345888888887775542 22222 44555433211100 01111223334445555533
Q ss_pred EEEcccccccccccccEEEEEEecCCcceeEEEe-cCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCce
Q 005140 426 VKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL-DNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRV 504 (712)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l-~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~ 504 (712)
+++..+ .|+.+............ ......|.++...++|... +++. + -|..|+..++..
T Consensus 422 igt~~~-----------Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lw-igt~-~---Gl~~~~~~~~~~---- 481 (781)
T 3v9f_A 422 FGTYLG-----------NISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIW-IGTH-A---GVFVIDLASKKV---- 481 (781)
T ss_dssp EEETTE-----------EEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEE-EEET-T---EEEEEESSSSSC----
T ss_pred EEeccC-----------CEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEE-EEEC-C---ceEEEeCCCCeE----
Confidence 343321 23444332222211111 0124578888887777644 4444 3 588888765432
Q ss_pred eEEEEeC-----CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeee-----ccccceeeEEECCCCCEEEEEE
Q 005140 505 SKLTTLK-----GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMAT-----AEHFMATDVEWDPTGRYVATAV 574 (712)
Q Consensus 505 ~~~~~~~-----~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~-----~~~~~v~~~~~spdg~~l~t~s 574 (712)
..+.... ...+.++...++|++.+... .+-|..|+..+.+.... .....|.++..+++|+..+. +
T Consensus 482 ~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~----~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~-T 556 (781)
T 3v9f_A 482 IHHYDTSNSQLLENFVRSIAQDSEGRFWIGTF----GGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLA-T 556 (781)
T ss_dssp CEEECTTTSSCSCSCEEEEEECTTCCEEEEES----SSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEE-E
T ss_pred EecccCcccccccceeEEEEEcCCCCEEEEEc----CCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEE-E
Confidence 2333222 24678899999998665543 34588888876544322 12356889999999985443 3
Q ss_pred ccceeccccEEEEEecCceeeee------cccceeeeEEecCCCCCC
Q 005140 575 TSVHEMENGFNIWSFNGKLLYRT------LKDHFFQFLWRPRPPSFL 615 (712)
Q Consensus 575 ~~~~~~d~~v~iw~~~g~~~~~~------~~~~i~~~~w~p~~~~l~ 615 (712)
. .|.+..|+......... ....+.++...++|...+
T Consensus 557 ~-----~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~ 598 (781)
T 3v9f_A 557 G-----EGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWA 598 (781)
T ss_dssp T-----TEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEE
T ss_pred C-----CCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEE
Confidence 3 23326666543322221 113455666666655433
No 464
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.07 E-value=0.0046 Score=63.86 Aligned_cols=224 Identities=5% Similarity=-0.100 Sum_probs=121.2
Q ss_pred EEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCe
Q 005140 286 VINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENV 363 (712)
Q Consensus 286 ~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v 363 (712)
.|+.+++..+............. .+.|.+ .+..|.... .+.|..+++................
T Consensus 97 ~I~~i~~~~~~~~~~~~~~~~~~--------------gl~~d~-~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p 161 (386)
T 3v65_B 97 DIRQVLPHRSEYTLLLNNLENAI--------------ALDFHH-RRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESP 161 (386)
T ss_dssp CEEEECTTSCCCEEEECSCSCEE--------------EEEEET-TTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCC
T ss_pred cceeeccCCCcEEEEecCCCccE--------------EEEEec-CCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCc
Confidence 47788876554433333333332 589997 666655554 7889999987554222111222345
Q ss_pred eeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEE
Q 005140 364 MDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFE 443 (712)
Q Consensus 364 ~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~ 443 (712)
..+++.+.+..|.+. .....+|+.++.............-.....++..|.+.+|++...... -.
T Consensus 162 ~glavd~~~g~lY~~------d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~---------~~ 226 (386)
T 3v65_B 162 GGLAVDWVHDKLYWT------DSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNT---------PR 226 (386)
T ss_dssp CCEEEETTTTEEEEE------ETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSS---------CE
T ss_pred cEEEEEeCCCeEEEE------cCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCC---------CE
Confidence 678888866655442 222346666665433211111101112334567887777776544321 25
Q ss_pred EEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccC
Q 005140 444 LFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPS 523 (712)
Q Consensus 444 l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spd 523 (712)
|+.+...+.....+. ...-.....++|+|++..|+.+.... ..|..++++.... ..+..........+++ ..
T Consensus 227 I~r~~~dG~~~~~~~-~~~~~~PnGlavd~~~~~lY~aD~~~--~~I~~~d~dG~~~----~~~~~~~~~~P~giav-~~ 298 (386)
T 3v65_B 227 IEASSMDGSGRRIIA-DTHLFWPNGLTIDYAGRRMYWVDAKH--HVIERANLDGSHR----KAVISQGLPHPFAITV-FE 298 (386)
T ss_dssp EEEEETTSCSCEEEE-CSSCSCEEEEEEEGGGTEEEEEETTT--TEEEEECTTSCSC----EEEECSSCSSEEEEEE-ET
T ss_pred EEEEeCCCCCcEEEE-ECCCCCeeeEEEeCCCCEEEEEECCC--CEEEEEeCCCCee----EEEEECCCCCceEEEE-EC
Confidence 666665544332222 12234578899999888888876543 2788888754221 1222222223466777 33
Q ss_pred CCeEEEEeccCCCceEEEEECCcceee
Q 005140 524 GRFIVLAGLKGFNGQLEFYNVDELETM 550 (712)
Q Consensus 524 g~~l~~~~~~~~dg~v~iwd~~~~~~~ 550 (712)
+ .|+.+..+ .+.|..++..+++.+
T Consensus 299 ~-~ly~td~~--~~~V~~~~~~~G~~~ 322 (386)
T 3v65_B 299 D-SLYWTDWH--TKSINSANKFTGKNQ 322 (386)
T ss_dssp T-EEEEEETT--TTEEEEEETTTCCSC
T ss_pred C-EEEEeeCC--CCeEEEEECCCCcce
Confidence 3 45444432 678888885555443
No 465
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.04 E-value=2.7e-06 Score=87.93 Aligned_cols=178 Identities=12% Similarity=-0.013 Sum_probs=87.1
Q ss_pred ceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc-eEEeecccCcceeeeecCC--C-e-e
Q 005140 183 DQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG-AAVWGGANTFNRLMRYAHP--Q-V-K 257 (712)
Q Consensus 183 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~-i~iw~~~~~~~~~~~~~~~--~-v-~ 257 (712)
+.+++...++.+..|+. ..++..-.+.. ..+.+..+.++|..+++++.++ +..||.. +++.+.++... . + .
T Consensus 10 ~~v~~gs~dg~v~a~d~-~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~-tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 10 TLLFVSTLDGSLHAVSK-RTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSK-NNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp TEEEEEETTSEEEEEET-TTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC------CCSEECSCCHHHHHTT
T ss_pred CEEEEEcCCCEEEEEEC-CCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECC-CCceeeeeeccCcccccc
Confidence 35566777888889987 45555544444 4555566677888888877777 8899997 66554444321 1 1 1
Q ss_pred EEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEe
Q 005140 258 LIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKL 337 (712)
Q Consensus 258 ~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~ 337 (712)
+..++ ++..|++++.+ +.|..||..+|+.+..+..+.. ..++| ++..++++
T Consensus 86 sp~~~-~~~~v~~g~~d----------g~v~a~D~~tG~~~w~~~~~~~-----------------~~~~p-~~~~v~~~ 136 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQ----------DIWYVIDLLTGEKQQTLSSAFA-----------------DSLSP-STSLLYLG 136 (369)
T ss_dssp CSCC------CCCCEEE----------EEEEEECCC----------------------------------------EEEE
T ss_pred CceEe-cCCEEEEEeCC----------CEEEEEECCCCcEEEEecCCCc-----------------ccccc-cCCEEEEE
Confidence 11222 34567777777 8999999999998887765431 34567 77777777
Q ss_pred c-CCeEEEEEcCCceecccccccccCeeeEEECCCC---CeEEEEeecCCCCCCCeEEEEEecCCccce
Q 005140 338 G-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTD---PIISLFVPELGGGNQPARVSLVQIPSKEEL 402 (712)
Q Consensus 338 ~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~---~~la~~~~~~~~~~~~~~i~~~~~~~~~~~ 402 (712)
+ ++.|..||..+++.+...... ......++++. ..+++ ++.+ ..++.++..+.+.+
T Consensus 137 ~~dg~v~a~d~~tG~~~W~~~~~--~~~~~~~~~~~~~~~~v~~-----~~~d--g~v~a~d~~tG~~~ 196 (369)
T 2hz6_A 137 RTEYTITMYDTKTRELRWNATYF--DYAASLPEDDVDYKMSHFV-----SNGD--GLVVTVDSESGDVL 196 (369)
T ss_dssp EEEEEEECCCSSSSSCCCEEEEE--EECCBCCCCCTTCCCCEEE-----EETS--CEEEEECTTTCCEE
T ss_pred ecCCEEEEEECCCCCEEEeEecc--cccCccccCCccccceEEE-----ECCC--CEEEEEECCCCcEE
Confidence 7 899999999999877654322 12233344431 33433 2222 45667776665543
No 466
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.03 E-value=0.0073 Score=62.32 Aligned_cols=236 Identities=8% Similarity=-0.075 Sum_probs=125.1
Q ss_pred ceEEEcCCCcEEEEEecCceEEeecccCcceeeee-cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC
Q 005140 217 SFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRY-AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG 295 (712)
Q Consensus 217 ~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~-~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g 295 (712)
+|.+..+ ..+|+.+....|+..++. +....... ....+..++|++.+..|...... .+.|..+++..+
T Consensus 80 ~C~~~~~-~~~l~~~~~~~I~~i~~~-~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~---------~~~I~r~~~~g~ 148 (386)
T 3v65_B 80 SCKALGP-EPVLLFANRIDIRQVLPH-RSEYTLLLNNLENAIALDFHHRRELVFWSDVT---------LDRILRANLNGS 148 (386)
T ss_dssp CEEECSS-CCEEEEECBSCEEEECTT-SCCCEEEECSCSCEEEEEEETTTTEEEEEETT---------TTEEEEEETTSC
T ss_pred eECCccc-cceeEeecCccceeeccC-CCcEEEEecCCCccEEEEEecCCCeEEEEeCC---------CCcEEEEecCCC
Confidence 4555556 446666677778888887 33322222 23458899999877766655433 168999997655
Q ss_pred ceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCeeeEEECCCCC
Q 005140 296 KVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDP 373 (712)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~ 373 (712)
.....+...... +. .+++.+ .+..|.... .+.|.++++..................+++.|.+.
T Consensus 149 ~~~~~~~~~~~~--------p~-----glavd~-~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g 214 (386)
T 3v65_B 149 NVEEVVSTGLES--------PG-----GLAVDW-VHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEG 214 (386)
T ss_dssp CEEEEECSSCSC--------CC-----CEEEET-TTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTT
T ss_pred CcEEEEeCCCCC--------cc-----EEEEEe-CCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCC
Confidence 433322211111 11 356665 555444333 77888888764321111112234578899999877
Q ss_pred eEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcc
Q 005140 374 IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIP 453 (712)
Q Consensus 374 ~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 453 (712)
.|.+. ......+|+.++.............-.....++|+|++..|+++..... .|+.+...+..
T Consensus 215 ~ly~t-----d~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~----------~I~~~d~dG~~ 279 (386)
T 3v65_B 215 TIYWT-----DWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHH----------VIERANLDGSH 279 (386)
T ss_dssp EEEEE-----ECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTT----------EEEEECTTSCS
T ss_pred eEEEe-----ccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCC----------EEEEEeCCCCe
Confidence 76652 1223467888876543211111101112335678888888877654432 45555443332
Q ss_pred eeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeec
Q 005140 454 IEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRT 497 (712)
Q Consensus 454 ~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~ 497 (712)
...+ +.........+++ . +..++.+.... ..|..++..+
T Consensus 280 ~~~~-~~~~~~~P~giav-~-~~~ly~td~~~--~~V~~~~~~~ 318 (386)
T 3v65_B 280 RKAV-ISQGLPHPFAITV-F-EDSLYWTDWHT--KSINSANKFT 318 (386)
T ss_dssp CEEE-ECSSCSSEEEEEE-E-TTEEEEEETTT--TEEEEEETTT
T ss_pred eEEE-EECCCCCceEEEE-E-CCEEEEeeCCC--CeEEEEECCC
Confidence 2222 2122344566777 2 33454444322 1676666433
No 467
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.02 E-value=0.0012 Score=73.57 Aligned_cols=308 Identities=12% Similarity=0.098 Sum_probs=153.0
Q ss_pred CcEEEEEecCc-eEEeecccCcceeeeecCC---CeeEEEecC--CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCcee
Q 005140 225 GTYLATVHRQG-AAVWGGANTFNRLMRYAHP---QVKLIDFSP--GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVM 298 (712)
Q Consensus 225 g~~lat~~~~~-i~iw~~~~~~~~~~~~~~~---~v~~i~~Sp--dg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~ 298 (712)
+..|++++.++ +..+|.. +++.+-++... ....+.-+| .+..++++.... .....+.|..+|..+|+.+
T Consensus 117 ~~~v~v~~~dg~l~alD~~-tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~----~~~~~g~v~a~D~~tG~~~ 191 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAK-TGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGA----EYGVRGFVSAYDADTGKLA 191 (668)
T ss_dssp BTEEEEECTTSEEEEEETT-TCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCT----TTCCBCEEEEEETTTCCEE
T ss_pred CCEEEEEcCCCEEEEEECC-CCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCC----CcCCCCEEEEEECCCCcEE
Confidence 55677777676 7788988 77766554321 111122222 133444443220 0012278999999999998
Q ss_pred eeccCCCcccccCCC------------C------CcCCCCcCeEEecCCCCCEEEEec-CC-------------------
Q 005140 299 RDFKGSADEFAVGGT------------G------GVAGVSWPVFRWGGGKDKYFAKLG-KN------------------- 340 (712)
Q Consensus 299 ~~~~~~~~~~~~~~~------------~------~~~~~~~~~~~~s~~dg~~la~~~-d~------------------- 340 (712)
..+............ + .-.+..|..+++.+ ++..++.+. ++
T Consensus 192 W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~ 270 (668)
T 1kv9_A 192 WRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLS 270 (668)
T ss_dssp EEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred EEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeee
Confidence 877532110000000 0 01123466688888 777776665 44
Q ss_pred eEEEEEcCCceeccccccccc---------CeeeEEECCCCC---eEEEEeecCCCCCCCeEEEEEecCCccceeeeeee
Q 005140 341 MISVYETESFTLIDKKSLKVE---------NVMDFSWSPTDP---IISLFVPELGGGNQPARVSLVQIPSKEELRQKNLF 408 (712)
Q Consensus 341 ~i~iwd~~~~~~~~~~~~~~~---------~v~~~~~sp~~~---~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 408 (712)
.|..+|..+|+.+........ ......+..+|+ .+++ .+..+.++.++..+.+.+....+.
T Consensus 271 ~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~-------~~~~G~l~~lD~~tG~~l~~~~~~ 343 (668)
T 1kv9_A 271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQ-------APKNGFFYVLDRTNGKLISAEKFG 343 (668)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEE-------CCTTSEEEEEETTTCCEEEEEESS
T ss_pred eEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEE-------ECCCCEEEEEECCCCCEecccccc
Confidence 488999999988765543211 111112223454 3444 455667888888877766443322
Q ss_pred eecceeEEECc-CCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCC--ceEEEEEeeCCCEEEEEEcCC
Q 005140 409 SVSDCKMYWQS-SGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKND--KIIAFAWEPKGHRFAVIHGDS 485 (712)
Q Consensus 409 ~~~~~~~~~s~-~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~--~v~~~~~sp~g~~l~~~~~d~ 485 (712)
... ....+.+ .+.-+... . . .| .+. ..+.+++..+ .-..++++|+...+++...+.
T Consensus 344 ~~~-w~~~~d~~~g~p~~~~--~-~-----~~----------~~~--~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~ 402 (668)
T 1kv9_A 344 KVT-WAEKVDLATGRPVEAP--G-V-----RY----------EKE--PIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEV 402 (668)
T ss_dssp CCC-SEEEECTTTCCEEECT--T-T-----TC----------SSS--CEEESSCTTCSSCSSCCEEETTTTEEEEEEEEC
T ss_pred ccc-cccccccccCCccccc--c-c-----cc----------cCC--eeEECCCCccccCCCcceECCCCCEEEEecccc
Confidence 110 0000110 11111000 0 0 00 000 0011110000 011245555555444322100
Q ss_pred ---------------------------------CCCeEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEe
Q 005140 486 ---------------------------------PRPDISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAG 531 (712)
Q Consensus 486 ---------------------------------~~~~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~ 531 (712)
....|..||+.+++. +-... ..+.....+...|..+++++
T Consensus 403 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~------~W~~~~~~~~~~~~~~t~gg~vf~g~ 476 (668)
T 1kv9_A 403 PGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKA------AWKVPYPTHWNGGTLSTAGNLVFQGT 476 (668)
T ss_dssp CEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEE------EEEEEESSSCCCCEEEETTTEEEEEC
T ss_pred ceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcE------EEEccCCCCCcCceeEeCCCEEEEEC
Confidence 002678888876652 22222 22334445556788888887
Q ss_pred ccCCCceEEEEECCcceeeeeccc-cc--eeeEEECCCCC-EEEEEEc
Q 005140 532 LKGFNGQLEFYNVDELETMATAEH-FM--ATDVEWDPTGR-YVATAVT 575 (712)
Q Consensus 532 ~~~~dg~v~iwd~~~~~~~~~~~~-~~--v~~~~~spdg~-~l~t~s~ 575 (712)
. +|.|+.||..+++.+..... .. ..-+.+..+|+ |++.++.
T Consensus 477 ~---dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~G 521 (668)
T 1kv9_A 477 A---AGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMAG 521 (668)
T ss_dssp T---TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred C---cccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEec
Confidence 7 99999999999998865322 11 12355567787 6666654
No 468
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.01 E-value=0.00079 Score=75.20 Aligned_cols=295 Identities=13% Similarity=0.070 Sum_probs=150.8
Q ss_pred eEEEecC-CCCEEEEEcCCCCCCC-cCCCccEEEEEEccCCceee--eccCCCcccccCCCCCcCCCCcCeEEecCCCCC
Q 005140 257 KLIDFSP-GEKYLVTYSSHEPSNP-RDANRVVINIFDVRTGKVMR--DFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK 332 (712)
Q Consensus 257 ~~i~~Sp-dg~~l~t~s~d~~~~~-~~~~~~~I~iwd~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~ 332 (712)
..+++.| +|+.++.|+.+..... .......+.+||..+++... .+..+.... ....++.. +++
T Consensus 189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~------------~~~~~~~~-~g~ 255 (656)
T 1k3i_A 189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMF------------CPGISMDG-NGQ 255 (656)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCS------------SCEEEECT-TSC
T ss_pred eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCc------------cccccCCC-CCC
Confidence 3667777 8888888876522110 01111368899998876322 222211111 11357778 999
Q ss_pred EEEEec--CCeEEEEEcCCceecccccccccC-eeeEEECCCCCeEEEEeecCCC-CCC---CeEEEEEecCCccceee-
Q 005140 333 YFAKLG--KNMISVYETESFTLIDKKSLKVEN-VMDFSWSPTDPIISLFVPELGG-GNQ---PARVSLVQIPSKEELRQ- 404 (712)
Q Consensus 333 ~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~sp~~~~la~~~~~~~~-~~~---~~~i~~~~~~~~~~~~~- 404 (712)
+++.++ +..+.+||..+........+.... -.+.+..++|+++++ |+ .++ ...++.|+..+..-...
T Consensus 256 lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~-----GG~~~~~~~~~~~e~yd~~t~~W~~~~ 330 (656)
T 1k3i_A 256 IVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTI-----GGSWSGGVFEKNGEVYSPSSKTWTSLP 330 (656)
T ss_dssp EEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEE-----CCCCCSSSCCCCEEEEETTTTEEEEET
T ss_pred EEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEE-----eCcccCCcccccceEeCCCCCcceeCC
Confidence 999988 568999998866533222222222 234566778988887 65 232 24577787765432111
Q ss_pred ----eeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecC-------CCCceEEEEEee
Q 005140 405 ----KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDN-------KNDKIIAFAWEP 473 (712)
Q Consensus 405 ----~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~-------h~~~v~~~~~sp 473 (712)
..+..... ...+..++..++++..++..........+..|+........ ...... ....-.++.+..
T Consensus 331 ~~~~~p~~~~~~-~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~-~~~~~~~~~~~~~~~~~~~av~~~~ 408 (656)
T 1k3i_A 331 NAKVNPMLTADK-QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK-SAGKRQSNRGVAPDAMCGNAVMYDA 408 (656)
T ss_dssp TSCSGGGCCCCT-TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE-EEEECEETTEECCCCBTCEEEEEET
T ss_pred Cccccccccccc-cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceee-cCCccccccccCCCCCCCceEeccC
Confidence 01111100 01123455555555544321111112235556554332111 111100 011223444444
Q ss_pred -CCCEEEEEEcCC-----CCC---eEEEEEeecccccCceeEEE--EeCCCc-eeEEEEccCCCeEEEEeccC-------
Q 005140 474 -KGHRFAVIHGDS-----PRP---DISFYSMRTAQHAGRVSKLT--TLKGKQ-ANALFWSPSGRFIVLAGLKG------- 534 (712)
Q Consensus 474 -~g~~l~~~~~d~-----~~~---~v~i~d~~~~~~~~~~~~~~--~~~~~~-v~~l~~spdg~~l~~~~~~~------- 534 (712)
+++.+++++.+. ... .|.+||..+.. +..+. .++... ..+.+..|+|+.+++++...
T Consensus 409 ~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~----W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~ 484 (656)
T 1k3i_A 409 VKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSP----NTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDS 484 (656)
T ss_dssp TTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCC----EEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCC
T ss_pred CCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCC----eeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCC
Confidence 566666665421 011 46677764432 22332 233222 24567789999999988521
Q ss_pred -CCceEEEEECCcceeee--eccc--cceeeEEECCCCCEEEEEEc
Q 005140 535 -FNGQLEFYNVDELETMA--TAEH--FMATDVEWDPTGRYVATAVT 575 (712)
Q Consensus 535 -~dg~v~iwd~~~~~~~~--~~~~--~~v~~~~~spdg~~l~t~s~ 575 (712)
.-..+.+||..+.+-.. .... .......+.|+|+.+++|+.
T Consensus 485 ~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 485 TPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp SBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 12568999987654322 1111 22234567899999999885
No 469
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.99 E-value=0.0095 Score=60.46 Aligned_cols=241 Identities=6% Similarity=-0.093 Sum_probs=127.8
Q ss_pred eeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEE
Q 005140 256 VKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFA 335 (712)
Q Consensus 256 v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la 335 (712)
..|.+..++ .+|+.+... .|+..++........+....... .+.|.+ .+..|.
T Consensus 36 ~~C~~~~~~-~~ll~~~~~-----------~I~~i~~~g~~~~~~~~~~~~~~--------------~l~~d~-~~~~ly 88 (349)
T 3v64_C 36 RSCKALGPE-PVLLFANRI-----------DIRQVLPHRSEYTLLLNNLENAI--------------ALDFHH-RRELVF 88 (349)
T ss_dssp SCEEESSSC-CEEEEECBS-----------CEEEECTTSCCEEEEECSCSCEE--------------EEEEET-TTTEEE
T ss_pred CcccccccC-ceeEeeccc-----------ceEEEeCCCCeeEEeecCCCceE--------------EEEEec-cccEEE
Confidence 455555563 345544433 47777775544433333333232 589997 666665
Q ss_pred Eec--CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecce
Q 005140 336 KLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDC 413 (712)
Q Consensus 336 ~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 413 (712)
.+. .+.|..+++..................+++.+.+..|.+. .....+|..++.............-....
T Consensus 89 ~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~------d~~~~~I~~~~~dG~~~~~l~~~~l~~P~ 162 (349)
T 3v64_C 89 WSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWT------DSGTSRIEVANLDGAHRKVLLWQSLEKPR 162 (349)
T ss_dssp EEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEE------ETTTTEEEEEETTSCSCEEEECTTCSCEE
T ss_pred EEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEE------cCCCCeEEEEcCCCCceEEEEeCCCCCcc
Confidence 554 7889999887553221111122345788888866655441 22234677776654321111110111233
Q ss_pred eEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEE
Q 005140 414 KMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFY 493 (712)
Q Consensus 414 ~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~ 493 (712)
.++++|.+.+|++...... -.|+.+...+.....+ +...-.....++|+|++..|+.+.... ..|..+
T Consensus 163 ~iavdp~~g~ly~td~~~~---------~~I~r~~~dG~~~~~~-~~~~~~~PnGla~d~~~~~lY~aD~~~--~~I~~~ 230 (349)
T 3v64_C 163 AIALHPMEGTIYWTDWGNT---------PRIEASSMDGSGRRII-ADTHLFWPNGLTIDYAGRRMYWVDAKH--HVIERA 230 (349)
T ss_dssp EEEEETTTTEEEEEECSSS---------CEEEEEETTSCSCEES-CCSSCSCEEEEEEETTTTEEEEEETTT--TEEEEE
T ss_pred eEEEecCcCeEEEeccCCC---------CEEEEEeCCCCCcEEE-EECCCCCcceEEEeCCCCEEEEEECCC--CEEEEE
Confidence 4567887777766554321 2566665544322111 111234578899999888888876543 278888
Q ss_pred EeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCccee
Q 005140 494 SMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET 549 (712)
Q Consensus 494 d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~ 549 (712)
+++.... ..+..........+++ . +..|+.+..+ .+.|..++..+++.
T Consensus 231 ~~dG~~~----~~~~~~~~~~P~giav-~-~~~ly~td~~--~~~V~~~~~~~G~~ 278 (349)
T 3v64_C 231 NLDGSHR----KAVISQGLPHPFAITV-F-EDSLYWTDWH--TKSINSANKFTGKN 278 (349)
T ss_dssp ETTSCSC----EEEECSSCSSEEEEEE-E-TTEEEEEETT--TTEEEEEETTTCCS
T ss_pred eCCCCce----EEEEeCCCCCceEEEE-E-CCEEEEecCC--CCeEEEEEccCCCc
Confidence 8754221 1222222223466777 2 3345544432 57787777544443
No 470
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.98 E-value=0.019 Score=58.21 Aligned_cols=235 Identities=8% Similarity=-0.077 Sum_probs=123.9
Q ss_pred cceEEEcCCCcEEEEEecCceEEeecccCcceeeee-cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC
Q 005140 216 ESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRY-AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT 294 (712)
Q Consensus 216 v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~-~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~ 294 (712)
.+|.+..++ .+|+.+....|+..+.. +....... ....+..++|++.+..|....... +.|..+++..
T Consensus 36 ~~C~~~~~~-~~ll~~~~~~I~~i~~~-g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~---------~~I~r~~~~g 104 (349)
T 3v64_C 36 RSCKALGPE-PVLLFANRIDIRQVLPH-RSEYTLLLNNLENAIALDFHHRRELVFWSDVTL---------DRILRANLNG 104 (349)
T ss_dssp SCEEESSSC-CEEEEECBSCEEEECTT-SCCEEEEECSCSCEEEEEEETTTTEEEEEETTT---------TEEEEEETTS
T ss_pred CcccccccC-ceeEeecccceEEEeCC-CCeeEEeecCCCceEEEEEeccccEEEEEeccC---------CceEEEecCC
Confidence 456666664 45666666678877777 33322222 234588999998777776654331 6888999765
Q ss_pred CceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEe-c-CCeEEEEEcCCceecccccccccCeeeEEECCCC
Q 005140 295 GKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKL-G-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTD 372 (712)
Q Consensus 295 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~-~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~ 372 (712)
+.....+...... +. .+++.+ .+..|... . .+.|.+.++..................++++|.+
T Consensus 105 ~~~~~~~~~~~~~--------p~-----glavd~-~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~ 170 (349)
T 3v64_C 105 SNVEEVVSTGLES--------PG-----GLAVDW-VHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPME 170 (349)
T ss_dssp CSCEEEECSSCSC--------CC-----EEEEET-TTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTT
T ss_pred CCceEEEeCCCCC--------cc-----EEEEec-CCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCc
Confidence 5432222211111 11 366665 55544433 3 7889999887432111111223456889999977
Q ss_pred CeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCc
Q 005140 373 PIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDI 452 (712)
Q Consensus 373 ~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 452 (712)
..|.+. ......+|+.++.............-.....+++++++..|+++..... .|+.+...+.
T Consensus 171 g~ly~t-----d~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~----------~I~~~~~dG~ 235 (349)
T 3v64_C 171 GTIYWT-----DWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHH----------VIERANLDGS 235 (349)
T ss_dssp TEEEEE-----ECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTT----------EEEEEETTSC
T ss_pred CeEEEe-----ccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCC----------EEEEEeCCCC
Confidence 766542 1222467888876543211110001112345678988888877654432 4455444332
Q ss_pred ceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEe
Q 005140 453 PIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSM 495 (712)
Q Consensus 453 ~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~ 495 (712)
....+ +.........+++ . +..+..+.... ..|..++.
T Consensus 236 ~~~~~-~~~~~~~P~giav-~-~~~ly~td~~~--~~V~~~~~ 273 (349)
T 3v64_C 236 HRKAV-ISQGLPHPFAITV-F-EDSLYWTDWHT--KSINSANK 273 (349)
T ss_dssp SCEEE-ECSSCSSEEEEEE-E-TTEEEEEETTT--TEEEEEET
T ss_pred ceEEE-EeCCCCCceEEEE-E-CCEEEEecCCC--CeEEEEEc
Confidence 22222 2122344566676 2 33454444322 15666653
No 471
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.96 E-value=0.038 Score=60.67 Aligned_cols=369 Identities=8% Similarity=-0.018 Sum_probs=182.9
Q ss_pred hccCCCCCceEEEEECCeeEEEecCCCCCCCcc-cccCCCcccceEEEcCCCcEEEEEecC-c--eEEeecccCcceee-
Q 005140 175 WLTDEKARDQFVIRSGTDTEVLWNDARHLKPEP-VYKRSYWTESFVQWSPLGTYLATVHRQ-G--AAVWGGANTFNRLM- 249 (712)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~v~~v~~Spdg~~lat~~~~-~--i~iw~~~~~~~~~~- 249 (712)
...|+.++..|++-...+.+...+.. +.... .+......-..|++.|.+.+|..+... . |...+++++.....
T Consensus 89 lAvD~~~~~ly~~d~~~~~I~v~~~d--G~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~ 166 (619)
T 3s94_A 89 LACDWLGEKLYWTDSETNRIEVSNLD--GSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII 166 (619)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred EEEEecCCEEEEEeCCCCEEEEEECC--CCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEE
Confidence 34455566677776666666666552 22222 222333456789999976566555522 2 54556653332222
Q ss_pred eecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCC
Q 005140 250 RYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGG 329 (712)
Q Consensus 250 ~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 329 (712)
.-.......|+++++++.|..+... .+.|...++. |...+.+...... .+. .+++..
T Consensus 167 ~~~~~~P~Glald~~~~~LY~aD~~---------~~~I~~~~~d-G~~~~~~~~~~~~-------~P~-----gi~~~~- 223 (619)
T 3s94_A 167 NSEIYWPNGLTLDYEEQKLYWADAK---------LNFIHKSNLD-GTNRQAVVKGSLP-------HPF-----ALTLFE- 223 (619)
T ss_dssp CSSCSSEEEEEEETTTTEEEEEETT---------TCCEEEESSS-CCEEC----------------CC-----CEEESS-
T ss_pred eCCCCCCcEEEEEccCCEEEEEeCC---------CCeEEEecCC-CCccEEEEeCCCC-------Cce-----EEEEeC-
Confidence 1123347899999988877776544 1578888874 4433333211000 011 355555
Q ss_pred CCCEEEEec--CCeEEEEEcCCceeccccccccc-------------------------CeeeEEE-CCCCCeEEEEeec
Q 005140 330 KDKYFAKLG--KNMISVYETESFTLIDKKSLKVE-------------------------NVMDFSW-SPTDPIISLFVPE 381 (712)
Q Consensus 330 dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~-------------------------~v~~~~~-sp~~~~la~~~~~ 381 (712)
+ .|.... .+.|...+..+++.......... +...+++ +|......+.++.
T Consensus 224 ~--~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~ 301 (619)
T 3s94_A 224 D--ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPT 301 (619)
T ss_dssp S--EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCT
T ss_pred C--EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCc
Confidence 4 444443 77888888766543211100000 0111111 1111001111110
Q ss_pred CC--CCC-------CCe--------EEEEEecCCcc--ceeeeeee-eecceeEEECcCCCEEEEEEccccccccccccc
Q 005140 382 LG--GGN-------QPA--------RVSLVQIPSKE--ELRQKNLF-SVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTG 441 (712)
Q Consensus 382 ~~--~~~-------~~~--------~i~~~~~~~~~--~~~~~~~~-~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~ 441 (712)
.- ..+ ... .|..+++.... .+. ..+. -.....+.|.+.+..|++......
T Consensus 302 g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~-~~~~~l~~~~~ld~d~~~~~ly~sD~~~~--------- 371 (619)
T 3s94_A 302 GVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIV-LQLEDIRHAIAIDYDPVEGYIYWTDDEVR--------- 371 (619)
T ss_dssp TCCBCTTSSCBCSSCSEEEEEEESSCEEEEESSSTTCCCEE-CCCSCCSSEEEEEEETTTTEEEEEETTTT---------
T ss_pred hheecccCcccCCCCceEEEEEcccceEEEecCCCccceeE-EeccccCccEEEEEEcCCCeEEEEeCCCC---------
Confidence 00 000 000 11122221111 000 0000 112344567776666666544322
Q ss_pred EEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEc
Q 005140 442 FELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWS 521 (712)
Q Consensus 442 ~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~s 521 (712)
.|+++...+.....+.. ..-.....+++.+.+..|+.+.... ..|.+.+++.... ..+..-.-.....+++.
T Consensus 372 -~I~r~~~~g~~~~~v~~-~~~~~p~GlAvD~~~~~lY~tD~~~--~~I~v~~~~G~~~----~~l~~~~l~~P~~iavd 443 (619)
T 3s94_A 372 -AIRRSFIDGSGSQFVVT-AQIAHPDGIAVDWVARNLYWTDTGT--DRIEVTRLNGTMR----KILISEDLEEPRAIVLD 443 (619)
T ss_dssp -EEEEEETTSCSCEEEEC-SSCSCCCEEEEETTTTEEEEEETTT--TEEEEEETTSCSC----EEEECTTCCSEEEEEEE
T ss_pred -eEEEEEcCCCccEEEEE-CCCCCcCceEEecccCcEEEEeCCC--CcEEEEeCCCCeE----EEEEECCCCCeeeEEEE
Confidence 46666654433322221 2234667889988777776665432 2888888754321 12221122356889999
Q ss_pred cCCCeEEEEeccCCCceEEEEECCcce--eeeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCce
Q 005140 522 PSGRFIVLAGLKGFNGQLEFYNVDELE--TMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKL 593 (712)
Q Consensus 522 pdg~~l~~~~~~~~dg~v~iwd~~~~~--~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~ 593 (712)
|...+|+.+..+. .+.|.-.+++... .+....-...+.+++++++..|..+... .+.|...+++|..
T Consensus 444 p~~G~ly~tD~g~-~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~----~~~I~~~~~dG~~ 512 (619)
T 3s94_A 444 PMVGYMYWTDWGE-IPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAK----TDKIEVMNTDGTG 512 (619)
T ss_dssp TTTTEEEEEECSS-SCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETT----TTEEEEEESSSCC
T ss_pred cCCCcEEEecCCC-CCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECC----CCEEEEEecCCCc
Confidence 9766666665433 4678777777432 2222334567899999988888777662 4567777777653
No 472
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.96 E-value=0.0039 Score=59.57 Aligned_cols=195 Identities=13% Similarity=0.114 Sum_probs=123.5
Q ss_pred CeeEEEecCCCCEEEE-EcCCCCCCCcCCCccEEEEEEccCCceeeeccCC--CcccccCCCCCcCCCCcCeEEecCCCC
Q 005140 255 QVKLIDFSPGEKYLVT-YSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGS--ADEFAVGGTGGVAGVSWPVFRWGGGKD 331 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t-~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~dg 331 (712)
.+..++|+|++..|++ ...+ +.|...|.. |+.++.+... .+.- .+++.+ ++
T Consensus 28 ~lSGla~~~~~~~L~aV~d~~----------~~I~~ld~~-g~v~~~i~l~g~~D~E--------------GIa~~~-~g 81 (255)
T 3qqz_A 28 NISSLTWSAQSNTLFSTINKP----------AAIVEMTTN-GDLIRTIPLDFVKDLE--------------TIEYIG-DN 81 (255)
T ss_dssp CEEEEEEETTTTEEEEEEETT----------EEEEEEETT-CCEEEEEECSSCSSEE--------------EEEECS-TT
T ss_pred CcceeEEeCCCCEEEEEECCC----------CeEEEEeCC-CCEEEEEecCCCCChH--------------HeEEeC-CC
Confidence 5899999998776665 4444 789999986 8888887432 2222 578888 88
Q ss_pred CEEEEec-CCeEEEEEcCCcee---ccccc------ccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecC-Ccc
Q 005140 332 KYFAKLG-KNMISVYETESFTL---IDKKS------LKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIP-SKE 400 (712)
Q Consensus 332 ~~la~~~-d~~i~iwd~~~~~~---~~~~~------~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~-~~~ 400 (712)
.++++.. ++.+.++++..... +.... ....+...++|+|.++.|.+ +....+..|+.++.. ...
T Consensus 82 ~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~v-----a~E~~p~~i~~~~g~~~~~ 156 (255)
T 3qqz_A 82 QFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWF-----FKEKNPIEVYKVNGLLSSN 156 (255)
T ss_dssp EEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEE-----EEESSSEEEEEEESTTCSS
T ss_pred EEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEE-----EECcCCceEEEEcccccCC
Confidence 8777654 88899998764432 11111 12234789999999987776 223345678888721 111
Q ss_pred ceee-------eeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCC-------CCce
Q 005140 401 ELRQ-------KNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNK-------NDKI 466 (712)
Q Consensus 401 ~~~~-------~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h-------~~~v 466 (712)
.+.. ...+......++++|....+++.++... .|..++..+.....+.+... -...
T Consensus 157 ~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~----------~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qp 226 (255)
T 3qqz_A 157 ELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESR----------ALQEVTLVGEVIGEMSLTKGSRGLSHNIKQA 226 (255)
T ss_dssp CCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTT----------EEEEECTTCCEEEEEECSTTGGGCSSCCCSE
T ss_pred ceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCC----------eEEEEcCCCCEEEEEEcCCccCCcccccCCC
Confidence 1111 0111123345678888888888777655 67777777777777777421 1366
Q ss_pred EEEEEeeCCCEEEEEEcCCCCCeEEEEE
Q 005140 467 IAFAWEPKGHRFAVIHGDSPRPDISFYS 494 (712)
Q Consensus 467 ~~~~~sp~g~~l~~~~~d~~~~~v~i~d 494 (712)
..+++.|+|+.+++ +... .++.|.
T Consensus 227 EGia~d~~G~lyIv-sE~n---~~y~f~ 250 (255)
T 3qqz_A 227 EGVAMDASGNIYIV-SEPN---RFYRFT 250 (255)
T ss_dssp EEEEECTTCCEEEE-ETTT---EEEEEE
T ss_pred CeeEECCCCCEEEE-cCCc---eEEEEE
Confidence 88999999984444 5543 444443
No 473
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.88 E-value=0.0052 Score=67.01 Aligned_cols=77 Identities=13% Similarity=0.070 Sum_probs=44.7
Q ss_pred eEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeecccc-c--eeeEEEC
Q 005140 489 DISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHF-M--ATDVEWD 564 (712)
Q Consensus 489 ~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~-~--v~~~~~s 564 (712)
.|..||+.+++. +-++. ...+....+...+..+++++. +|.|+.||..+++++.+.... . ..-+.+.
T Consensus 445 ~l~a~D~~tG~~------~W~~~~~~~~~~~~~~t~gg~v~~g~~---dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~ 515 (571)
T 2ad6_A 445 QIRAFDLTTGKA------KWTKWEKFAAWGGTLYTKGGLVWYATL---DGYLKALDNKDGKELWNFKMPSGGIGSPMTYS 515 (571)
T ss_dssp EEEEECTTTCCE------EEEEEESSCCCSBCEEETTTEEEEECT---TSEEEEEETTTCCEEEEEECSSCCCSCCEEEE
T ss_pred eEEEEECCCCCE------EEEecCCCCccceeEEECCCEEEEEcC---CCeEEEEECCCCCEEEEEeCCCCcEeeeEEEE
Confidence 677777766542 22222 222223233345667777776 999999999999988653321 1 1234456
Q ss_pred CCCCEEEEEE
Q 005140 565 PTGRYVATAV 574 (712)
Q Consensus 565 pdg~~l~t~s 574 (712)
.+|+.++...
T Consensus 516 ~~G~~yv~~~ 525 (571)
T 2ad6_A 516 FKGKQYIGSM 525 (571)
T ss_dssp ETTEEEEEEE
T ss_pred ECCEEEEEEE
Confidence 7777444433
No 474
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.88 E-value=0.011 Score=59.19 Aligned_cols=251 Identities=10% Similarity=0.022 Sum_probs=127.9
Q ss_pred CeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcc------------cccCCCCCcCCCCcC
Q 005140 255 QVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADE------------FAVGGTGGVAGVSWP 322 (712)
Q Consensus 255 ~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~------------~~~~~~~~~~~~~~~ 322 (712)
...+++|+++|+++.++..+ +.|..|+..++.. ..+...... ........+.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~----------~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~----- 83 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQD----------GRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTY----- 83 (322)
T ss_dssp CCCCEECCTTCSSEEEECTT----------SEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEE-----
T ss_pred CceEEEEcCCCCEEEEEcCC----------CeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCc-----
Confidence 46789999999977777777 7899998765543 323211000 0000000111
Q ss_pred eEEecCCCCCEEEEecCCeEEEEEcCCcee--ccccc--ccccCeeeEEECC-CCCeEEEEeecC-C---------CCCC
Q 005140 323 VFRWGGGKDKYFAKLGKNMISVYETESFTL--IDKKS--LKVENVMDFSWSP-TDPIISLFVPEL-G---------GGNQ 387 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~d~~i~iwd~~~~~~--~~~~~--~~~~~v~~~~~sp-~~~~la~~~~~~-~---------~~~~ 387 (712)
.+++.+.++.++++...+.|..++..++.. +.... ........+++.| +|++.++-.... . ....
T Consensus 84 gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~ 163 (322)
T 2fp8_A 84 DISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDK 163 (322)
T ss_dssp EEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCC
T ss_pred eEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCC
Confidence 467775134444443455688888775532 11110 1123468899999 887665410000 0 0123
Q ss_pred CeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCC-cceeEE-EecCCCCc
Q 005140 388 PARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERD-IPIEVL-ELDNKNDK 465 (712)
Q Consensus 388 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~-~l~~h~~~ 465 (712)
...|+.++....+...... .-.....++|+++|++|+++..... .+..|++.... .....+ .+ .+
T Consensus 164 ~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~--------~I~~~~~~~~~~~~~~~~~~~---~g- 230 (322)
T 2fp8_A 164 TGRLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSH--------QIVKYWLEGPKKGTAEVLVKI---PN- 230 (322)
T ss_dssp CEEEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGT--------EEEEEESSSTTTTCEEEEEEC---SS-
T ss_pred CceEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCC--------eEEEEECCCCcCCccceEEeC---CC-
Confidence 4678888875443211111 1122334689999998877654322 13444433211 111111 22 23
Q ss_pred eEEEEEeeCCCEEEEEEcC-------CCCCeEEEEEeecccccCceeEEEEe--CC----CceeEEEEccCCCeEEEEec
Q 005140 466 IIAFAWEPKGHRFAVIHGD-------SPRPDISFYSMRTAQHAGRVSKLTTL--KG----KQANALFWSPSGRFIVLAGL 532 (712)
Q Consensus 466 v~~~~~sp~g~~l~~~~~d-------~~~~~v~i~d~~~~~~~~~~~~~~~~--~~----~~v~~l~~spdg~~l~~~~~ 532 (712)
...+++.++|+.+++.... +....|..++.. +. .+..+ +. ..+..+++ .+|+.+++...
T Consensus 231 P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~------~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~ 302 (322)
T 2fp8_A 231 PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GN------ILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLF 302 (322)
T ss_dssp EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SC------EEEEEECCTTTTTSCCCEEEE-ETTEEEEECSS
T ss_pred CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CC------EEEEEECCCCCccccceEEEE-eCCEEEEeecC
Confidence 7789999999876665441 000156666653 21 22222 21 23555655 45544444333
Q ss_pred cCCCceEEEEECC
Q 005140 533 KGFNGQLEFYNVD 545 (712)
Q Consensus 533 ~~~dg~v~iwd~~ 545 (712)
++.|..+++.
T Consensus 303 ---~~~i~~~~~~ 312 (322)
T 2fp8_A 303 ---HGSVGILVYD 312 (322)
T ss_dssp ---CSEEEEEEC-
T ss_pred ---CCceEEEecc
Confidence 6788888876
No 475
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.88 E-value=0.002 Score=71.87 Aligned_cols=278 Identities=12% Similarity=0.045 Sum_probs=142.7
Q ss_pred eEEEcC-CCcEEEEEecC------------ceEEeecccCcc--eeeeecC--CC-eeEEEecCCCCEEEEEcCCCCCCC
Q 005140 218 FVQWSP-LGTYLATVHRQ------------GAAVWGGANTFN--RLMRYAH--PQ-VKLIDFSPGEKYLVTYSSHEPSNP 279 (712)
Q Consensus 218 ~v~~Sp-dg~~lat~~~~------------~i~iw~~~~~~~--~~~~~~~--~~-v~~i~~Spdg~~l~t~s~d~~~~~ 279 (712)
.+++.| +|++++.|+.+ .+.+||.. +.. .+..+.. .. ..++++.++|+.+++|+.+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~-t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~---- 264 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPS-TGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA---- 264 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTT-TCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSST----
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCC-CCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCC----
Confidence 567777 89999988632 15588876 333 3333322 22 44678889999999998651
Q ss_pred cCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--C-----CeEEEEEcCCcee
Q 005140 280 RDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--K-----NMISVYETESFTL 352 (712)
Q Consensus 280 ~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d-----~~i~iwd~~~~~~ 352 (712)
..+.+||..+++....-..+.... .......+ +|++++.++ + ..+.+||..+...
T Consensus 265 -----~~v~~yd~~t~~W~~~~~~~~~R~------------~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W 326 (656)
T 1k3i_A 265 -----KKTSLYDSSSDSWIPGPDMQVARG------------YQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 326 (656)
T ss_dssp -----TCEEEEEGGGTEEEECCCCSSCCS------------SCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred -----CceEEecCcCCceeECCCCCcccc------------ccceEEec-CCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence 469999998776433221111111 12456677 889888887 3 5689999876543
Q ss_pred ccc-----ccccccCeeeEEECCCCCeEEEEeecCCCCCC-------CeEEEEEecCCccceeeeeeeee---------c
Q 005140 353 IDK-----KSLKVENVMDFSWSPTDPIISLFVPELGGGNQ-------PARVSLVQIPSKEELRQKNLFSV---------S 411 (712)
Q Consensus 353 ~~~-----~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~---------~ 411 (712)
... ....... ....+..++..+++ ++.++ ...+..|+............... .
T Consensus 327 ~~~~~~~~~p~~~~~-~~~~~~~~~~iyv~-----Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~ 400 (656)
T 1k3i_A 327 TSLPNAKVNPMLTAD-KQGLYRSDNHAWLF-----GWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMC 400 (656)
T ss_dssp EEETTSCSGGGCCCC-TTGGGTTTCSCCEE-----ECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBT
T ss_pred eeCCCcccccccccc-ccceeecCCceEEE-----ECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCC
Confidence 211 0011110 11223345555554 33332 23566777665442221111111 1
Q ss_pred ceeEEEC-cCCCEEEEEEcccccccccccc---cEEEEEEecCCcceeEE---EecCCCCceEEEEEeeCCCEEEEEEcC
Q 005140 412 DCKMYWQ-SSGDYLAVKVDRYTKTKKSTYT---GFELFRIKERDIPIEVL---ELDNKNDKIIAFAWEPKGHRFAVIHGD 484 (712)
Q Consensus 412 ~~~~~~s-~~g~~l~~~~~~~~~~~~~~~~---~~~l~~l~~~~~~~~~~---~l~~h~~~v~~~~~sp~g~~l~~~~~d 484 (712)
...+.+. .+++.++++..+... ...... .+.+|+.... .-..+ .+ .....-.+++..|+|+.+++++.+
T Consensus 401 ~~av~~~~~~~~i~v~GG~~~~~-~~~~~~~~~~v~~yd~~~~--~W~~~~~~~m-p~~R~~~~~~~l~~g~i~v~GG~~ 476 (656)
T 1k3i_A 401 GNAVMYDAVKGKILTFGGSPDYQ-DSDATTNAHIITLGEPGTS--PNTVFASNGL-YFARTFHTSVVLPDGSTFITGGQR 476 (656)
T ss_dssp CEEEEEETTTTEEEEECCBSSSS-SSBCCCCEEEEECCSTTSC--CEEEECTTCC-SSCCBSCEEEECTTSCEEEECCBS
T ss_pred CceEeccCCCCeEEEEeCCCCCC-CCCcCCcceEEEcCCCCCC--CeeEEccCCC-CCCcccCCeEECCCCCEEEECCcc
Confidence 2222333 355566665432110 000011 1223322111 11111 11 112223455677899999988754
Q ss_pred C--------CCCeEEEEEeecccccCceeEEEEeCCCc--eeEEEEccCCCeEEEEec
Q 005140 485 S--------PRPDISFYSMRTAQHAGRVSKLTTLKGKQ--ANALFWSPSGRFIVLAGL 532 (712)
Q Consensus 485 ~--------~~~~v~i~d~~~~~~~~~~~~~~~~~~~~--v~~l~~spdg~~l~~~~~ 532 (712)
. ....+.+||..+.. +..+..+.... ..+..+.|+|+.+++|+.
T Consensus 477 ~~~~~~~~~~~~~v~~ydp~t~~----W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 477 RGIPFEDSTPVFTPEIYVPEQDT----FYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp BCCTTCCCSBCCCCEEEEGGGTE----EEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cCcCcCCCCcccceEEEcCCCCc----eeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 1 12478999986543 33333232221 234556799999999874
No 476
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.85 E-value=0.014 Score=55.63 Aligned_cols=193 Identities=9% Similarity=0.155 Sum_probs=116.6
Q ss_pred eEEecCCCCCEEEEec--CCeEEEEEcCCceeccccccc-ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc
Q 005140 323 VFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLK-VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 399 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 399 (712)
.++|.| +++.|.+.. ++.|...|.. ++.+....+. ......+++.+++.++++ ..+..+++++++...
T Consensus 31 Gla~~~-~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs-------~E~~~~l~~~~v~~~ 101 (255)
T 3qqz_A 31 SLTWSA-QSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVIS-------DERDYAIYVISLTPN 101 (255)
T ss_dssp EEEEET-TTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEE-------ETTTTEEEEEEECTT
T ss_pred eeEEeC-CCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEE-------ECCCCcEEEEEcCCC
Confidence 589999 877666554 7788888887 6666544322 235778899988876555 333456777776554
Q ss_pred cce---eeeee------eeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEec--CCcceeEEEe-----cCCC
Q 005140 400 EEL---RQKNL------FSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKE--RDIPIEVLEL-----DNKN 463 (712)
Q Consensus 400 ~~~---~~~~~------~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~~l-----~~h~ 463 (712)
..+ ....+ .+...-.++|+|.+..|.++..+.. ..+|.++. .......... ..+.
T Consensus 102 ~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p---------~~i~~~~g~~~~~~l~i~~~~~~~~~~~~ 172 (255)
T 3qqz_A 102 SEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNP---------IEVYKVNGLLSSNELHISKDKALQRQFTL 172 (255)
T ss_dssp CCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSS---------EEEEEEESTTCSSCCEEEECHHHHHTCCS
T ss_pred CeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCC---------ceEEEEcccccCCceeeecchhhcccccc
Confidence 321 11111 1122246789999988888776654 46676652 1111111110 0123
Q ss_pred CceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCC---------ceeEEEEccCCCeEEEEeccC
Q 005140 464 DKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGK---------QANALFWSPSGRFIVLAGLKG 534 (712)
Q Consensus 464 ~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~---------~v~~l~~spdg~~l~~~~~~~ 534 (712)
..+.+++++|....|.+.+..+. .|..+|.... ......+..+ +...++|.|+|+..+ .+.
T Consensus 173 ~d~S~l~~dp~tg~lliLS~~s~--~L~~~d~~g~-----~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI-vsE-- 242 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSHESR--ALQEVTLVGE-----VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI-VSE-- 242 (255)
T ss_dssp SCCCEEEEETTTTEEEEEETTTT--EEEEECTTCC-----EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE-EET--
T ss_pred CCceeEEEcCCCCeEEEEECCCC--eEEEEcCCCC-----EEEEEEcCCccCCcccccCCCCeeEECCCCCEEE-EcC--
Confidence 46789999998777777777552 7888886432 2234444421 457899999998544 455
Q ss_pred CCceEEEEEC
Q 005140 535 FNGQLEFYNV 544 (712)
Q Consensus 535 ~dg~v~iwd~ 544 (712)
.+.++.|..
T Consensus 243 -~n~~y~f~~ 251 (255)
T 3qqz_A 243 -PNRFYRFTP 251 (255)
T ss_dssp -TTEEEEEEC
T ss_pred -CceEEEEEe
Confidence 456666644
No 477
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.85 E-value=0.022 Score=56.77 Aligned_cols=224 Identities=7% Similarity=-0.082 Sum_probs=120.4
Q ss_pred EEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCc---eeccc-cccc
Q 005140 286 VINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESF---TLIDK-KSLK 359 (712)
Q Consensus 286 ~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~---~~~~~-~~~~ 359 (712)
.|+..|+.++.....+....... .+.|.+ .+..|..+. .+.|..+++.+. ..... ....
T Consensus 11 ~I~~i~~~~~~~~~~~~~~~~p~--------------g~~~d~-~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~ 75 (316)
T 1ijq_A 11 EVRKMTLDRSEYTSLIPNLRNVV--------------ALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD 75 (316)
T ss_dssp SEEEEETTSCCCEEEECSCSSEE--------------EEEEET-TTTEEEEEETTTTEEEEEEC--------CEEEECSS
T ss_pred eEEEEECCCcceEehhcCCCceE--------------EEEEEe-CCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCC
Confidence 48888987766544443333333 588998 776665554 789999998751 11111 1112
Q ss_pred ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccccc
Q 005140 360 VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTY 439 (712)
Q Consensus 360 ~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~ 439 (712)
......+++.+.+..|.+. .....+|..++.............-.....++..|.+.+|++......
T Consensus 76 ~~~p~glavd~~~~~ly~~------d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~------- 142 (316)
T 1ijq_A 76 IQAPDGLAVDWIHSNIYWT------DSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP------- 142 (316)
T ss_dssp CSCCCEEEEETTTTEEEEE------ETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSS-------
T ss_pred CCCcCEEEEeecCCeEEEE------ECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCC-------
Confidence 2346788888765555431 223346666766543211111100112234567887777766543211
Q ss_pred ccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeC--CCceeE
Q 005140 440 TGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLK--GKQANA 517 (712)
Q Consensus 440 ~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~--~~~v~~ 517 (712)
-.|+.+...+.....+ ....-.....++|+|++..|+.+.... ..|..++++... ...+.... ......
T Consensus 143 --~~I~~~~~dG~~~~~~-~~~~~~~P~gla~d~~~~~lY~~D~~~--~~I~~~d~dg~~----~~~~~~~~~~~~~P~g 213 (316)
T 1ijq_A 143 --AKIKKGGLNGVDIYSL-VTENIQWPNGITLDLLSGRLYWVDSKL--HSISSIDVNGGN----RKTILEDEKRLAHPFS 213 (316)
T ss_dssp --CEEEEEETTSCCEEEE-ECSSCSCEEEEEEETTTTEEEEEETTT--TEEEEEETTSCS----CEEEEECTTTTSSEEE
T ss_pred --CeEEEEcCCCCCeEEE-EECCCCCceEEEEeccCCEEEEEECCC--CeEEEEecCCCc----eEEEeecCCccCCcEE
Confidence 2466655444332222 112234678899999988888876543 289999986422 12333321 123456
Q ss_pred EEEccCCCeEEEEeccCCCceEEEEECCcceee
Q 005140 518 LFWSPSGRFIVLAGLKGFNGQLEFYNVDELETM 550 (712)
Q Consensus 518 l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~ 550 (712)
+++. +..|+.+..+ .+.|..++..+++.+
T Consensus 214 iav~--~~~ly~~d~~--~~~V~~~~~~~g~~~ 242 (316)
T 1ijq_A 214 LAVF--EDKVFWTDII--NEAIFSANRLTGSDV 242 (316)
T ss_dssp EEEE--TTEEEEEETT--TTEEEEEETTTCCCC
T ss_pred EEEE--CCEEEEEECC--CCeEEEEeCCCCcce
Confidence 6774 3455554432 678888887655543
No 478
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.82 E-value=0.0043 Score=69.19 Aligned_cols=302 Identities=10% Similarity=0.072 Sum_probs=152.4
Q ss_pred CCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccc-cCCC-CCcCCCCcCeEEecCCCCCEEEEecCCeE
Q 005140 265 EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFA-VGGT-GGVAGVSWPVFRWGGGKDKYFAKLGKNMI 342 (712)
Q Consensus 265 g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~s~~dg~~la~~~d~~i 342 (712)
+..|++++.+ +.|..+|..+|+.+..+........ .... ..+.. .+... ++..++...++.|
T Consensus 66 ~g~vyv~~~~----------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~v~v~~~dg~l 129 (668)
T 1kv9_A 66 DGVIYTSMSW----------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNR----GVALW--GDKVYVGTLDGRL 129 (668)
T ss_dssp TTEEEEEEGG----------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCC----CCEEE--BTEEEEECTTSEE
T ss_pred CCEEEEECCC----------CeEEEEECCCChhceEECCCCCccccccccccCCcc----ceEEE--CCEEEEEcCCCEE
Confidence 4556666667 7899999999999888765432110 0000 00000 12221 3444443349999
Q ss_pred EEEEcCCceeccccccccc-CeeeEEECC--CCCeEEEEeecCCCCC----CCeEEEEEecCCccceeeeeee-------
Q 005140 343 SVYETESFTLIDKKSLKVE-NVMDFSWSP--TDPIISLFVPELGGGN----QPARVSLVQIPSKEELRQKNLF------- 408 (712)
Q Consensus 343 ~iwd~~~~~~~~~~~~~~~-~v~~~~~sp--~~~~la~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~------- 408 (712)
..+|..+|+.+........ ....+.-+| .+..+++ +..+ ....|+-++..+.+.+-.....
T Consensus 130 ~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~v-----g~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~ 204 (668)
T 1kv9_A 130 IALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVII-----GNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALP 204 (668)
T ss_dssp EEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEE-----CCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSC
T ss_pred EEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEE-----eCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcc
Confidence 9999999998766543211 011111122 1233333 2221 2356666776665533222110
Q ss_pred ------------------------eecceeEEECcCCCEEEEEEccccc---------ccccccccEEEEEEecC-Ccce
Q 005140 409 ------------------------SVSDCKMYWQSSGDYLAVKVDRYTK---------TKKSTYTGFELFRIKER-DIPI 454 (712)
Q Consensus 409 ------------------------~~~~~~~~~s~~g~~l~~~~~~~~~---------~~~~~~~~~~l~~l~~~-~~~~ 454 (712)
...-..+.+.+.+..+++++.+... .+...|. ..|+-++.. +...
T Consensus 205 ~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~-~~v~AlD~~tG~~~ 283 (668)
T 1kv9_A 205 YEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYL-SSILAIRPDTGKLA 283 (668)
T ss_dssp CSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTT-TEEEEECTTTCCEE
T ss_pred ccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceee-eeEEEEcCCCCcee
Confidence 0000124567777788777655420 0000111 023333322 2222
Q ss_pred eEEEecCCC-------CceEEEEEeeCCC---EEEEEEcCCCCCeEEEEEeecccccCceeE-----EEEeC---CC---
Q 005140 455 EVLELDNKN-------DKIIAFAWEPKGH---RFAVIHGDSPRPDISFYSMRTAQHAGRVSK-----LTTLK---GK--- 513 (712)
Q Consensus 455 ~~~~l~~h~-------~~v~~~~~sp~g~---~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~-----~~~~~---~~--- 513 (712)
-......|. .+.....+..+|+ .+++++.++ .++++|..++........ ...+. +.
T Consensus 284 W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G---~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~ 360 (668)
T 1kv9_A 284 WHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNG---FFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVE 360 (668)
T ss_dssp EEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTS---EEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEE
T ss_pred eEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCC---EEEEEECCCCCEeccccccccccccccccccCCccc
Confidence 222222222 2223333344675 566666777 888888877652100000 00000 00
Q ss_pred ---------------------ceeEEEEccCCCeEEEEec---------------------------------cCCCceE
Q 005140 514 ---------------------QANALFWSPSGRFIVLAGL---------------------------------KGFNGQL 539 (712)
Q Consensus 514 ---------------------~v~~l~~spdg~~l~~~~~---------------------------------~~~dg~v 539 (712)
.-..++++|+...+++... ...+|.|
T Consensus 361 ~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l 440 (668)
T 1kv9_A 361 APGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGAL 440 (668)
T ss_dssp CTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEE
T ss_pred cccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceE
Confidence 0123688888776665211 0124889
Q ss_pred EEEECCcceeeeecc-ccceeeEEECCCCCEEEEEEccceeccccEEEEEec-Cceeee
Q 005140 540 EFYNVDELETMATAE-HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYR 596 (712)
Q Consensus 540 ~iwd~~~~~~~~~~~-~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~ 596 (712)
..||+.+++.+-+.. ........+...|..|++++. |+.++.||.. |+.+..
T Consensus 441 ~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~-----dg~l~a~d~~tG~~l~~ 494 (668)
T 1kv9_A 441 LAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTA-----AGQMHAYSADKGEALWQ 494 (668)
T ss_dssp EEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECT-----TSEEEEEETTTCCEEEE
T ss_pred EEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECC-----cccchhhhhhcChhheE
Confidence 999999998876532 233344455667888888877 8999999875 555443
No 479
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.80 E-value=0.039 Score=57.67 Aligned_cols=157 Identities=8% Similarity=0.024 Sum_probs=83.1
Q ss_pred eEEecCCC-CCEEEEec-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc-
Q 005140 323 VFRWGGGK-DKYFAKLG-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK- 399 (712)
Q Consensus 323 ~~~~s~~d-g~~la~~~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~- 399 (712)
.++|+| . +..|..+. .+.|+.+++.++.+... .........++|+++++.|.+..... ......+..+.....
T Consensus 141 ~lavdp-~~~g~Lyv~d~~~~I~~id~~~~~v~~~-~~~~~~P~~ia~d~~G~~lyvad~~~--~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 141 WLSFDP-KNHNHLYLVGEQHPTRLIDFEKEYVSTV-YSGLSKVRTICWTHEADSMIITNDQN--NNDRPNNYILTRESGF 216 (430)
T ss_dssp EEEEET-TEEEEEEEEEBTEEEEEEETTTTEEEEE-ECCCSCEEEEEECTTSSEEEEEECCS--CTTSEEEEEEEGGGTS
T ss_pred EEEECC-CCCCeEEEEeCCCcEEEEECCCCEEEEE-ecCCCCcceEEEeCCCCEEEEEeCCC--CcccceEEEEeCCCce
Confidence 578886 4 33344444 58889999886554321 12334578999999999665521110 112223444433211
Q ss_pred cceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeE-EEecCCCCceEEEEEeeCCCEE
Q 005140 400 EELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEV-LELDNKNDKIIAFAWEPKGHRF 478 (712)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~l~~h~~~v~~~~~sp~g~~l 478 (712)
....... .......++++|++..|++...... .++.+...+..... ..+ +.......++|+|+|++|
T Consensus 217 ~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~----------~V~~~~~~~~~~~~~~~~-~~~~~P~gia~~pdG~~l 284 (430)
T 3tc9_A 217 KVITELT-KGQNCNGAETHPINGELYFNSWNAG----------QVFRYDFTTQETTPLFTI-QDSGWEFHIQFHPSGNYA 284 (430)
T ss_dssp CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTT----------EEEEEETTTTEEEEEEEC-SSSSCCEEEEECTTSSEE
T ss_pred eeeeeec-cCCCceEEEEeCCCCEEEEEECCCC----------EEEEEECCCCcEEEEEEc-CCCCcceeEEEcCCCCEE
Confidence 1111111 1112344567884444555443322 45665554333211 222 122456789999999977
Q ss_pred EEEEcCCCCCeEEEEEeec
Q 005140 479 AVIHGDSPRPDISFYSMRT 497 (712)
Q Consensus 479 ~~~~~d~~~~~v~i~d~~~ 497 (712)
+++.... ..|..++.+.
T Consensus 285 yv~d~~~--~~I~~~~~d~ 301 (430)
T 3tc9_A 285 YIVVVNQ--HYILRSDYDW 301 (430)
T ss_dssp EEEETTT--TEEEEEEEET
T ss_pred EEEECCC--CEEEEEeCCc
Confidence 7776543 2888888763
No 480
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.79 E-value=0.01 Score=64.69 Aligned_cols=50 Identities=18% Similarity=0.273 Sum_probs=34.4
Q ss_pred CCCeEEEEeccCCCceEEEEECCcceeeeeccc---cceeeEEECCCCC-EEEEEEc
Q 005140 523 SGRFIVLAGLKGFNGQLEFYNVDELETMATAEH---FMATDVEWDPTGR-YVATAVT 575 (712)
Q Consensus 523 dg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~---~~v~~~~~spdg~-~l~t~s~ 575 (712)
.|..+++++. ||.|+.||..+++++-+... ....-+.|..+|+ ||++.+.
T Consensus 483 agg~vf~gt~---dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~G 536 (599)
T 1w6s_A 483 AGDLVFYGTL---DGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYG 536 (599)
T ss_dssp TTTEEEEECT---TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred cCCEEEEECC---CCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEEcc
Confidence 5667777776 99999999999998865322 1223356677887 4555444
No 481
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.79 E-value=0.072 Score=58.43 Aligned_cols=399 Identities=10% Similarity=-0.009 Sum_probs=190.8
Q ss_pred hccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecC-c-eEEeecccCcceeee-e
Q 005140 175 WLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQ-G-AAVWGGANTFNRLMR-Y 251 (712)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~-~-i~iw~~~~~~~~~~~-~ 251 (712)
.-+++.....|++-...+.+..++..........+.........+++.+.+..|+.+... + |.+.+..++...+.. -
T Consensus 45 ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~ 124 (619)
T 3s94_A 45 VDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQ 124 (619)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred EEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeC
Confidence 344555555666665555555555522211222333333456789999976666666543 4 778888844333222 1
Q ss_pred cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcC-eEEecCCC
Q 005140 252 AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWP-VFRWGGGK 330 (712)
Q Consensus 252 ~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~d 330 (712)
.......|++.|.+.+|....... .+.|...++ .|.....+.... +.|| .+++++ +
T Consensus 125 ~l~~P~~Iavdp~~g~ly~tD~g~--------~~~I~r~~~-dG~~~~~l~~~~-------------~~~P~Glald~-~ 181 (619)
T 3s94_A 125 ELDQPRAIALDPSSGFMYWTDWGE--------VPKIERAGM-DGSSRFIIINSE-------------IYWPNGLTLDY-E 181 (619)
T ss_dssp SCSCCCCEEEETTTTEEEEEECSS--------SCEEEEEET-TSCSCEEEECSS-------------CSSEEEEEEET-T
T ss_pred CCCCCceEEEecCCCeEEEeccCC--------CCEEEEEEC-CCCceEEEEeCC-------------CCCCcEEEEEc-c
Confidence 233478999999877666655320 146666665 444333332111 1122 578888 7
Q ss_pred CCEEEEec--CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeee---
Q 005140 331 DKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK--- 405 (712)
Q Consensus 331 g~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--- 405 (712)
++.|..+. .+.|..+++..................+++..+ .|.. + .-....|+.++..+.+.....
T Consensus 182 ~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~-t-----d~~~~~V~~~d~~tg~~~~~i~~~ 253 (619)
T 3s94_A 182 EQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYW-T-----DWSTHSILACNKYTGEGLREIHSD 253 (619)
T ss_dssp TTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEE-E-----CTTTCSEEEEESSSCCCCEECCSC
T ss_pred CCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEE-e-----cCCCCEEEEEECCCCcccEEEecC
Confidence 77666665 778888888743322111111222345666544 3322 1 223334555554333211100
Q ss_pred -------eee-e--------------ecceeEE-ECcC-CCEEEEEEcccccc--cccc---cccEEEE-------EEec
Q 005140 406 -------NLF-S--------------VSDCKMY-WQSS-GDYLAVKVDRYTKT--KKST---YTGFELF-------RIKE 449 (712)
Q Consensus 406 -------~~~-~--------------~~~~~~~-~s~~-g~~l~~~~~~~~~~--~~~~---~~~~~l~-------~l~~ 449 (712)
.++ . ..+..+. .+|. +.+-+.+....... +... ...+.++ .+..
T Consensus 254 ~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l 333 (619)
T 3s94_A 254 IFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISL 333 (619)
T ss_dssp CCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEEES
T ss_pred CCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEcccceEEEec
Confidence 000 0 0000011 1221 12222221111000 0000 0111111 1111
Q ss_pred CCcceeEEEec-CCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEE
Q 005140 450 RDIPIEVLELD-NKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIV 528 (712)
Q Consensus 450 ~~~~~~~~~l~-~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~ 528 (712)
.......+.++ ..-..+.+++|.+.+..|+.+.... ..|+.++++.... ..+....-.....+++.+.++.|+
T Consensus 334 ~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~--~~I~r~~~~g~~~----~~v~~~~~~~p~GlAvD~~~~~lY 407 (619)
T 3s94_A 334 DTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEV--RAIRRSFIDGSGS----QFVVTAQIAHPDGIAVDWVARNLY 407 (619)
T ss_dssp SSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTT--TEEEEEETTSCSC----EEEECSSCSCCCEEEEETTTTEEE
T ss_pred CCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCC--CeEEEEEcCCCcc----EEEEECCCCCcCceEEecccCcEE
Confidence 11100111111 1123567899998777777766532 2777777754321 122222223567899998777777
Q ss_pred EEeccCCCceEEEEECCcce--eeeeccccceeeEEECCCCCEEEEEEccceeccccEEEEEecCceeeee---ccccee
Q 005140 529 LAGLKGFNGQLEFYNVDELE--TMATAEHFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLYRT---LKDHFF 603 (712)
Q Consensus 529 ~~~~~~~dg~v~iwd~~~~~--~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~~~---~~~~i~ 603 (712)
.+..+ .+.|.+.++++.. .+....-....+++++|...+|..+.... ...|...+++|...... ......
T Consensus 408 ~tD~~--~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~---~~~I~r~~~dG~~~~~l~~~~l~~P~ 482 (619)
T 3s94_A 408 WTDTG--TDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGE---IPKIERAALDGSDRVVLVNTSLGWPN 482 (619)
T ss_dssp EEETT--TTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSS---SCEEEEEETTSCSCEEEECSSCSCEE
T ss_pred EEeCC--CCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCC---CCEEEEEccCCCccEEEEeCCCCCCe
Confidence 66532 6889999988542 22223335678999999755555554310 23455555666533222 234566
Q ss_pred eeEEecCCCCCC
Q 005140 604 QFLWRPRPPSFL 615 (712)
Q Consensus 604 ~~~w~p~~~~l~ 615 (712)
.++..+....|+
T Consensus 483 GlalD~~~~~LY 494 (619)
T 3s94_A 483 GLALDYDEGKIY 494 (619)
T ss_dssp EEEEETTTTEEE
T ss_pred eeEEcccCCEEE
Confidence 777777554443
No 482
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.76 E-value=0.0088 Score=59.95 Aligned_cols=244 Identities=10% Similarity=0.046 Sum_probs=126.6
Q ss_pred eEEecCCCCCEEEEec-CCeEEEEEcCCceecccc-------------------cccccCeeeEEECC-CCCeEEEEeec
Q 005140 323 VFRWGGGKDKYFAKLG-KNMISVYETESFTLIDKK-------------------SLKVENVMDFSWSP-TDPIISLFVPE 381 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~-d~~i~iwd~~~~~~~~~~-------------------~~~~~~v~~~~~sp-~~~~la~~~~~ 381 (712)
.++|.+ +++++.+.. ++.|..|+..++....-. ......+..+++.+ ++++++.
T Consensus 23 ~i~~d~-~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~---- 97 (322)
T 2fp8_A 23 SFTFDS-TNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV---- 97 (322)
T ss_dssp CEECCT-TCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE----
T ss_pred EEEEcC-CCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE----
Confidence 478999 998555555 899999987754332100 00123478899998 6655443
Q ss_pred CCCCCCCeEEEEEecCCcc--ceeeee--eeeecceeEEECc-CCCEEEEEEccc-cccc-----ccccccEEEEEEecC
Q 005140 382 LGGGNQPARVSLVQIPSKE--ELRQKN--LFSVSDCKMYWQS-SGDYLAVKVDRY-TKTK-----KSTYTGFELFRIKER 450 (712)
Q Consensus 382 ~~~~~~~~~i~~~~~~~~~--~~~~~~--~~~~~~~~~~~s~-~g~~l~~~~~~~-~~~~-----~~~~~~~~l~~l~~~ 450 (712)
... ..++.++..... .+.... ........+.+.+ +|...++..... .... ......-.++.+...
T Consensus 98 -d~~---~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 173 (322)
T 2fp8_A 98 -DCY---YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS 173 (322)
T ss_dssp -ETT---TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred -ECC---CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC
Confidence 112 236667654332 111100 0001123467788 886544432210 0000 000011346666543
Q ss_pred CcceeEEEecCCCCceEEEEEeeCCCEEEEEEc-CCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEE
Q 005140 451 DIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVL 529 (712)
Q Consensus 451 ~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~-d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~ 529 (712)
......+. ..-.....++|+|+|++|+++.. .+ .|..|++..... .....+..+.+ ...+++.++|++.++
T Consensus 174 ~~~~~~~~--~~~~~p~gia~~~dg~~lyv~d~~~~---~I~~~~~~~~~~-~~~~~~~~~~g--P~gi~~d~~G~l~va 245 (322)
T 2fp8_A 174 TKETTLLL--KELHVPGGAEVSADSSFVLVAEFLSH---QIVKYWLEGPKK-GTAEVLVKIPN--PGNIKRNADGHFWVS 245 (322)
T ss_dssp TTEEEEEE--EEESCCCEEEECTTSSEEEEEEGGGT---EEEEEESSSTTT-TCEEEEEECSS--EEEEEECTTSCEEEE
T ss_pred CCEEEEec--cCCccCcceEECCCCCEEEEEeCCCC---eEEEEECCCCcC-CccceEEeCCC--CCCeEECCCCCEEEE
Confidence 32222111 01134557899999998877755 34 899999864221 12223333433 678999999986655
Q ss_pred Eecc-------CCCceEEEEECCcceeeeecc------ccceeeEEECCCCCEEEEEEccceeccccEEEEEec
Q 005140 530 AGLK-------GFNGQLEFYNVDELETMATAE------HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN 590 (712)
Q Consensus 530 ~~~~-------~~dg~v~iwd~~~~~~~~~~~------~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~ 590 (712)
.... ...+.|..+|.. ++.+.... ...++.+++ .+|+..++... .+.|..+++.
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~-----~~~i~~~~~~ 312 (322)
T 2fp8_A 246 SSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLF-----HGSVGILVYD 312 (322)
T ss_dssp EEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSS-----CSEEEEEEC-
T ss_pred ecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecC-----CCceEEEecc
Confidence 4320 003568888875 55444321 134556666 35544444434 5778777765
No 483
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.75 E-value=0.037 Score=55.14 Aligned_cols=227 Identities=8% Similarity=-0.070 Sum_probs=119.3
Q ss_pred EEEEEecCceEEeecccCcceeeeec-CCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccC---Cceeee-c
Q 005140 227 YLATVHRQGAAVWGGANTFNRLMRYA-HPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRT---GKVMRD-F 301 (712)
Q Consensus 227 ~lat~~~~~i~iw~~~~~~~~~~~~~-~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~---g~~~~~-~ 301 (712)
+|+++....|+..++. +........ ...+..++|++.+..|..+... .+.|..+++.. +..... +
T Consensus 3 ~ll~~~~~~I~~i~~~-~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~---------~~~I~~~~~~g~~~~~~~~~~~ 72 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLD-RSEYTSLIPNLRNVVALDTEVASNRIYWSDLS---------QRMICSTQLDRAHGVSSYDTVI 72 (316)
T ss_dssp EEEEECBSSEEEEETT-SCCCEEEECSCSSEEEEEEETTTTEEEEEETT---------TTEEEEEEC--------CEEEE
T ss_pred EEEEECCCeEEEEECC-CcceEehhcCCCceEEEEEEeCCCEEEEEECC---------CCcEEEEECCCCCCCcccEEEE
Confidence 5777777788888887 444333332 3458899999987766655443 16899998754 122221 2
Q ss_pred cCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEe-c-CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEe
Q 005140 302 KGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKL-G-KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFV 379 (712)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~-~-d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~ 379 (712)
..... .+. .+++.+ .+..|..+ . .+.|.++++..................+++.|.+..|.+
T Consensus 73 ~~~~~--------~p~-----glavd~-~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~-- 136 (316)
T 1ijq_A 73 SRDIQ--------APD-----GLAVDW-IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYW-- 136 (316)
T ss_dssp CSSCS--------CCC-----EEEEET-TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEE--
T ss_pred eCCCC--------CcC-----EEEEee-cCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEE--
Confidence 11100 011 466665 44444333 3 889999998743221111112345788999997776654
Q ss_pred ecCCCCCCCeEEEEEecCCcc--ceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEE
Q 005140 380 PELGGGNQPARVSLVQIPSKE--ELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVL 457 (712)
Q Consensus 380 ~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 457 (712)
+..+...+|+.++..... .+....+ .....++|++++..|+++..... .|+.+...+.....+
T Consensus 137 ---~d~~~~~~I~~~~~dG~~~~~~~~~~~--~~P~gla~d~~~~~lY~~D~~~~----------~I~~~d~dg~~~~~~ 201 (316)
T 1ijq_A 137 ---TDWGTPAKIKKGGLNGVDIYSLVTENI--QWPNGITLDLLSGRLYWVDSKLH----------SISSIDVNGGNRKTI 201 (316)
T ss_dssp ---EECSSSCEEEEEETTSCCEEEEECSSC--SCEEEEEEETTTTEEEEEETTTT----------EEEEEETTSCSCEEE
T ss_pred ---EccCCCCeEEEEcCCCCCeEEEEECCC--CCceEEEEeccCCEEEEEECCCC----------eEEEEecCCCceEEE
Confidence 112223678877764322 1111111 12345678988888877654432 344444433322222
Q ss_pred E-ecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecc
Q 005140 458 E-LDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTA 498 (712)
Q Consensus 458 ~-l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~ 498 (712)
. ....-.....+++. +..++.+.... ..|..++..++
T Consensus 202 ~~~~~~~~~P~giav~--~~~ly~~d~~~--~~V~~~~~~~g 239 (316)
T 1ijq_A 202 LEDEKRLAHPFSLAVF--EDKVFWTDIIN--EAIFSANRLTG 239 (316)
T ss_dssp EECTTTTSSEEEEEEE--TTEEEEEETTT--TEEEEEETTTC
T ss_pred eecCCccCCcEEEEEE--CCEEEEEECCC--CeEEEEeCCCC
Confidence 1 11112345667773 34555554432 26777776443
No 484
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.75 E-value=0.0071 Score=63.38 Aligned_cols=143 Identities=13% Similarity=0.103 Sum_probs=82.1
Q ss_pred CeeEEEecC-CCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCE
Q 005140 255 QVKLIDFSP-GEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKY 333 (712)
Q Consensus 255 ~v~~i~~Sp-dg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~ 333 (712)
....|+|+| ++..|..+... +.|+.+|+.++............. .++|++ +|++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~----------~~I~~id~~~~~v~~~~~~~~~P~--------------~ia~d~-~G~~ 192 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQ----------HPTRLIDFEKEYVSTVYSGLSKVR--------------TICWTH-EADS 192 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBT----------EEEEEEETTTTEEEEEECCCSCEE--------------EEEECT-TSSE
T ss_pred CCCEEEECCCCCCeEEEEeCC----------CcEEEEECCCCEEEEEecCCCCcc--------------eEEEeC-CCCE
Confidence 467899999 56677777665 579999986655433333222222 589999 9995
Q ss_pred EEEec--CC----eEEEEEcCCceecccc-cccccCeeeEEECC-CCCeEEEEeecCCCCCCCeEEEEEecCCccceeee
Q 005140 334 FAKLG--KN----MISVYETESFTLIDKK-SLKVENVMDFSWSP-TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK 405 (712)
Q Consensus 334 la~~~--d~----~i~iwd~~~~~~~~~~-~~~~~~v~~~~~sp-~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 405 (712)
|..+. ++ .+.+++ ..+...... .........++++| ++.++++ .....+|+.++..........
T Consensus 193 lyvad~~~~~~~~~v~~~~-~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~-------d~~~~~V~~~~~~~~~~~~~~ 264 (430)
T 3tc9_A 193 MIITNDQNNNDRPNNYILT-RESGFKVITELTKGQNCNGAETHPINGELYFN-------SWNAGQVFRYDFTTQETTPLF 264 (430)
T ss_dssp EEEEECCSCTTSEEEEEEE-GGGTSCSEEEEEECSSCCCEEECTTTCCEEEE-------ETTTTEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCcccceEEEEe-CCCceeeeeeeccCCCceEEEEeCCCCEEEEE-------ECCCCEEEEEECCCCcEEEEE
Confidence 55444 22 233333 333322111 11234567889999 5655544 334457888887654321111
Q ss_pred eee-eecceeEEECcCCCEEEEEEcc
Q 005140 406 NLF-SVSDCKMYWQSSGDYLAVKVDR 430 (712)
Q Consensus 406 ~~~-~~~~~~~~~s~~g~~l~~~~~~ 430 (712)
... ......++|+|+|++|++....
T Consensus 265 ~~~~~~~P~gia~~pdG~~lyv~d~~ 290 (430)
T 3tc9_A 265 TIQDSGWEFHIQFHPSGNYAYIVVVN 290 (430)
T ss_dssp ECSSSSCCEEEEECTTSSEEEEEETT
T ss_pred EcCCCCcceeEEEcCCCCEEEEEECC
Confidence 111 1224457899999977776544
No 485
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.73 E-value=0.012 Score=61.72 Aligned_cols=143 Identities=10% Similarity=0.066 Sum_probs=79.0
Q ss_pred CeeEEEecCC--CCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCC
Q 005140 255 QVKLIDFSPG--EKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDK 332 (712)
Q Consensus 255 ~v~~i~~Spd--g~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~ 332 (712)
....|+|+|+ +..|..+... +.|+.+|..++............. .++|++ +|+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~----------~~I~~id~~~g~v~~~~~~~~~P~--------------giavd~-dG~ 194 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQR----------DAFRHVDFVNQYVDIKTTNIGQCA--------------DVNFTL-NGD 194 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBT----------SCEEEEETTTTEEEEECCCCSCEE--------------EEEECT-TCC
T ss_pred CCceEEEccccCCCEEEEEeCC----------CCEEEEECCCCEEEEeecCCCCcc--------------EEEECC-CCC
Confidence 3678999995 4556665554 469999987776554443222222 689999 999
Q ss_pred EEEEecCC----e-EEEEEcCCceecc-cccccccCeeeEEECC-CCCeEEEEeecCCCCCCCeEEEEEecCCccceeee
Q 005140 333 YFAKLGKN----M-ISVYETESFTLID-KKSLKVENVMDFSWSP-TDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK 405 (712)
Q Consensus 333 ~la~~~d~----~-i~iwd~~~~~~~~-~~~~~~~~v~~~~~sp-~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 405 (712)
++++...+ . +..++.. +.... ...........++++| +|.+.++ .....+|+.++..........
T Consensus 195 lyVad~~~~~~~~gv~~~~~~-~~~~~~~~~~~~~~P~giavd~~~G~lyv~-------d~~~~~V~~~d~~~g~~~~~~ 266 (433)
T 4hw6_A 195 MVVVDDQSSDTNTGIYLFTRA-SGFTERLSLCNARGAKTCAVHPQNGKIYYT-------RYHHAMISSYDPATGTLTEEE 266 (433)
T ss_dssp EEEEECCSCTTSEEEEEECGG-GTTCCEEEEEECSSBCCCEECTTTCCEEEC-------BTTCSEEEEECTTTCCEEEEE
T ss_pred EEEEcCCCCcccceEEEEECC-CCeeccccccccCCCCEEEEeCCCCeEEEE-------ECCCCEEEEEECCCCeEEEEE
Confidence 55554421 2 3333322 11110 0111233467789999 5554443 334457888887644331111
Q ss_pred -ee-eeecceeEEECcCCCEEEEEEcc
Q 005140 406 -NL-FSVSDCKMYWQSSGDYLAVKVDR 430 (712)
Q Consensus 406 -~~-~~~~~~~~~~s~~g~~l~~~~~~ 430 (712)
.. .......++|+|+|++|++....
T Consensus 267 ~~~~~~~~~~~ia~dpdG~~LYvad~~ 293 (433)
T 4hw6_A 267 VMMDTKGSNFHIVWHPTGDWAYIIYNG 293 (433)
T ss_dssp EECSCCSSCEEEEECTTSSEEEEEETT
T ss_pred eccCCCCCcccEEEeCCCCEEEEEeCC
Confidence 10 01112247899999977776554
No 486
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.70 E-value=0.038 Score=57.74 Aligned_cols=240 Identities=7% Similarity=-0.041 Sum_probs=118.6
Q ss_pred eEEecCCC---CCEEEEecCCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc
Q 005140 323 VFRWGGGK---DKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 399 (712)
Q Consensus 323 ~~~~s~~d---g~~la~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 399 (712)
.++|+| + +.++++-..+.|+.++..++.+.... ........++++|+|+++++ .. .+......+..+.....
T Consensus 143 gvavd~-~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVa-d~--~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 143 RMMFDP-NSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVV-DD--QSSDTNTGIYLFTRASG 217 (433)
T ss_dssp EEEECT-TTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEE-EC--CSCTTSEEEEEECGGGT
T ss_pred eEEEcc-ccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEE-cC--CCCcccceEEEEECCCC
Confidence 588988 6 44433333588999998766654221 23445889999999994433 11 00111222333332211
Q ss_pred cc-eeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcce-eEEEecCCCCceEEEEEeeCCCE
Q 005140 400 EE-LRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPI-EVLELDNKNDKIIAFAWEPKGHR 477 (712)
Q Consensus 400 ~~-~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~l~~h~~~v~~~~~sp~g~~ 477 (712)
.. ..... .-.....++++|++..|+++..... .++.+....... ..+...+.......++|+|+|++
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~----------~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~ 286 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHA----------MISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDW 286 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCS----------EEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCC----------EEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCE
Confidence 10 00000 1112233567884444444332221 466665442222 11211111223346999999997
Q ss_pred EEEEEcCCCCCeEEEEEeecccccC-ceeEE-EEeC-------------CCceeEEEE---------ccCCCeEEEEecc
Q 005140 478 FAVIHGDSPRPDISFYSMRTAQHAG-RVSKL-TTLK-------------GKQANALFW---------SPSGRFIVLAGLK 533 (712)
Q Consensus 478 l~~~~~d~~~~~v~i~d~~~~~~~~-~~~~~-~~~~-------------~~~v~~l~~---------spdg~~l~~~~~~ 533 (712)
|+++.... ..|..++++...... ....+ .... -.....+++ .++|.++++-..
T Consensus 287 LYvad~~~--~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~- 363 (433)
T 4hw6_A 287 AYIIYNGK--HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRD- 363 (433)
T ss_dssp EEEEETTT--TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETT-
T ss_pred EEEEeCCC--CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECC-
Confidence 77776543 278887765321100 00111 1100 012356888 666765555444
Q ss_pred CCCceEEEEECCcceeeeecc-------------------ccceeeEEEC-CCCCEEEEEEccceeccccEEEEEe
Q 005140 534 GFNGQLEFYNVDELETMATAE-------------------HFMATDVEWD-PTGRYVATAVTSVHEMENGFNIWSF 589 (712)
Q Consensus 534 ~~dg~v~iwd~~~~~~~~~~~-------------------~~~v~~~~~s-pdg~~l~t~s~~~~~~d~~v~iw~~ 589 (712)
++.|+.++.. +.+..... -.....++++ ++|. |+.+... .+.|+.+++
T Consensus 364 --n~~I~~~~~~-G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~-lyVaD~~----n~rIr~i~~ 431 (433)
T 4hw6_A 364 --SHTVRVLTPE-GRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKC-FYIGDCD----NHRVRKIAP 431 (433)
T ss_dssp --TTEEEEECTT-SEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTE-EEEEEGG----GTEEEEEEE
T ss_pred --CCEEEEECCC-CCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCE-EEEEeCC----CCEEEEEec
Confidence 6788888864 43322110 1235678999 4554 4444431 566666654
No 487
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.69 E-value=0.052 Score=56.14 Aligned_cols=225 Identities=6% Similarity=-0.087 Sum_probs=119.7
Q ss_pred EEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCce----eccccccc
Q 005140 286 VINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFT----LIDKKSLK 359 (712)
Q Consensus 286 ~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~----~~~~~~~~ 359 (712)
.|+..++........+....... .++|.+ .+..|.... .+.|..+++.... ........
T Consensus 93 ~I~~i~l~~~~~~~~~~~~~~~~--------------~l~~d~-~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~ 157 (400)
T 3p5b_L 93 EVRKMTLDRSEYTSLIPNLRNVV--------------ALDTEV-ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD 157 (400)
T ss_dssp EEEEECTTSCSCEEEECSCSCEE--------------EEEEET-TTTEEEEEETTTTEEEEEEC------CCCEEEECSS
T ss_pred eeEEEccCCcceeEeccccCcce--------------EEeeee-ccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCC
Confidence 68888876554433333333333 689998 766666554 7889888876421 11111112
Q ss_pred ccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEccccccccccc
Q 005140 360 VENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTY 439 (712)
Q Consensus 360 ~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~ 439 (712)
......+++.+.+..|.+. .....+|..++.............-.....++..|.+.+|+.......
T Consensus 158 ~~~p~glavD~~~~~lY~~------d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~------- 224 (400)
T 3p5b_L 158 IQAPDGLAVDWIHSNIYWT------DSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP------- 224 (400)
T ss_dssp CSCEEEEEEETTTTEEEEE------ETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSS-------
T ss_pred CCCcccEEEEecCCceEEE------ECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCC-------
Confidence 3456788888865555442 223346777776543321111101112334567887777766543211
Q ss_pred ccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCC--CceeE
Q 005140 440 TGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKG--KQANA 517 (712)
Q Consensus 440 ~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~--~~v~~ 517 (712)
-.|+.+...+.....+ +...-.....++++|++..|+.+.... ..|..++++.... ..+..... .....
T Consensus 225 --~~I~~~~~dG~~~~~~-~~~~l~~P~glavd~~~~~lY~aD~~~--~~I~~~d~dG~~~----~~~~~~~~~l~~P~g 295 (400)
T 3p5b_L 225 --AKIKKGGLNGVDIYSL-VTENIQWPNGITLDLLSGRLYWVDSKL--HSISSIDVNGGNR----KTILEDEKRLAHPFS 295 (400)
T ss_dssp --CCEEEEETTSCSCEEE-ECSSCSCEEEEEEETTTTEEEEEETTT--TEEEEEETTSCCC----EEEEECSSTTSSEEE
T ss_pred --CEEEEEeCCCCccEEE-EECCCCceEEEEEEeCCCEEEEEECCC--CEEEEEeCCCCcc----EEEEeCCCCCCCCEE
Confidence 1355555544332222 212235678899999988888886543 2788888854321 12322211 12345
Q ss_pred EEEccCCCeEEEEeccCCCceEEEEECCcceeee
Q 005140 518 LFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMA 551 (712)
Q Consensus 518 l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~ 551 (712)
+++ ++..|+.+..+ .+.|..+|..+++.+.
T Consensus 296 l~v--~~~~lywtd~~--~~~V~~~~~~~G~~~~ 325 (400)
T 3p5b_L 296 LAV--FEDKVFWTDII--NEAIFSANRLTGSDVN 325 (400)
T ss_dssp EEE--ETTEEEEEESS--SCSEEEEESSSCCCCE
T ss_pred EEE--eCCEEEEecCC--CCeEEEEEcCCCCceE
Confidence 555 45555555432 5778888866665443
No 488
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.63 E-value=0.016 Score=57.21 Aligned_cols=226 Identities=8% Similarity=0.038 Sum_probs=124.2
Q ss_pred cCCCCCEEEEec---CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCC-------CCCeEEEEEec
Q 005140 327 GGGKDKYFAKLG---KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGG-------NQPARVSLVQI 396 (712)
Q Consensus 327 s~~dg~~la~~~---d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~-------~~~~~i~~~~~ 396 (712)
+. +|..|+... ++.|...+..... ..+ +... .+--++++|.+|.+.....+.. .....|+.+++
T Consensus 22 ~~-~g~~iy~~n~~d~~~ly~~~~dg~~-~~~--l~~~--~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~ 95 (302)
T 3s25_A 22 CE-SDGEVFFSNTNDNGRLYAMNIDGSN-IHK--LSND--TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR 95 (302)
T ss_dssp EE-ETTEEEEEEGGGTTEEEEEETTSCS-CEE--EEEE--EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred EE-eCCEEEEEeCCCCceEEEEcCCCCC-CEE--ccCC--ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence 44 667666664 4555555544222 111 1111 2335688999998743221000 01356777777
Q ss_pred CCccceeeeeeeeecceeEEECcCCCEEEEEE--cccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeC
Q 005140 397 PSKEELRQKNLFSVSDCKMYWQSSGDYLAVKV--DRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPK 474 (712)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~--~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~ 474 (712)
...+...... .....|+++|++|+... .... ..||.+...+.....+. .+.. .+++|+
T Consensus 96 dg~~~~~l~~-----~~~~~~s~~g~~Iy~~~~~~~~~---------~~Iy~~~~dGs~~~~lt--~~~~----~~~~~~ 155 (302)
T 3s25_A 96 NGHGSTVLDP-----DPCIYASLIGNYIYYLHYDTQTA---------TSLYRIRIDGEEKKKIK--NHYL----FTCNTS 155 (302)
T ss_dssp TSCCCEEEEC-----SCEEEEEEETTEEEEEEESSSSC---------EEEEEEETTSCCCEEEE--SSCC----CCSEEE
T ss_pred CCCcceEeec-----CCccEEEEeCCEEEEEeecCCCC---------ceEEEEECCCCCeEEEe--CCCc----eEeeEE
Confidence 6554221111 11236788999999876 1222 57888887765543333 2222 457889
Q ss_pred CCEEEEEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeecc
Q 005140 475 GHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAE 554 (712)
Q Consensus 475 g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~ 554 (712)
|+.|+..+... +.|...++..+.. +.+ +. .... ..++|+|++|+...... ...|..-++++.......
T Consensus 156 g~~iy~t~~g~--~~Iy~~~l~g~~~----~~l--~~-~~~~-~~~~P~g~~iy~t~~~~-~~~I~~~~ldG~~~~~Lt- 223 (302)
T 3s25_A 156 DRYFYYNNPKN--GQLYRYDTASQSE----ALF--YD-CNCY-KPVVLDDTNVYYMDVNR-DNAIVHVNINNPNPVVLT- 223 (302)
T ss_dssp TTEEEEECTTT--CCEEEEETTTTEE----EEE--EC-SCEE-EEEEEETTEEEEEEGGG-TTEEEEECSSSCCCEECS-
T ss_pred CCEEEEEeCCC--ceEEEEECCCCCE----EEE--eC-CCcc-ceeeecCCEEEEEEcCC-CcEEEEEECCCCCeEEEe-
Confidence 99999887622 2677777654321 122 22 2223 34669999999887532 246777777754432222
Q ss_pred ccceeeEEECCCCCEEEEEEccceeccccEEEEEecCceee
Q 005140 555 HFMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFNGKLLY 595 (712)
Q Consensus 555 ~~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~g~~~~ 595 (712)
...+ ..|+|+|++|..++... .+.|..-+++|....
T Consensus 224 ~~~~--~~~~~~g~~Iy~~~~~~---~~~i~~~~~DG~~r~ 259 (302)
T 3s25_A 224 EANI--EHYNVYGSLIFYQRGGD---NPALCVVKNDGTGFK 259 (302)
T ss_dssp CSCE--EEEEEETTEEEEEECSS---SCEEEEEETTSCCCE
T ss_pred CCCc--ceEEECCCEEEEEECCC---CcEEEEEECCCCccE
Confidence 1222 45889999998765410 245555566665433
No 489
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.60 E-value=0.14 Score=56.30 Aligned_cols=399 Identities=11% Similarity=0.026 Sum_probs=194.1
Q ss_pred chhhccCCCCCceEEEEECCeeEEEecCCCCCCCcccccCCCcccceEEEcCCCcEEEEEecCc--eEEeecccCcceee
Q 005140 172 LQKWLTDEKARDQFVIRSGTDTEVLWNDARHLKPEPVYKRSYWTESFVQWSPLGTYLATVHRQG--AAVWGGANTFNRLM 249 (712)
Q Consensus 172 l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~v~~v~~Spdg~~lat~~~~~--i~iw~~~~~~~~~~ 249 (712)
.....+|+.....|.+-...+.+.-++.. .......+.........+++.+.+..|..+.... |.+.+..++.....
T Consensus 39 ~~~l~~d~~~~~lywtD~~~~~I~r~~~~-g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l 117 (628)
T 4a0p_A 39 ASALDFDVTDNRIYWTDISLKTISRAFMN-GSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVL 117 (628)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEE
T ss_pred eEEEEEECCCCEEEEEECCCCeEEEEECC-CCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEE
Confidence 33445566666666666666666555542 2222222332334566788987766666665433 77888874443332
Q ss_pred e-ecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcC-eEEec
Q 005140 250 R-YAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWP-VFRWG 327 (712)
Q Consensus 250 ~-~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s 327 (712)
. -.......|++.|...+|....... .+.|...++. |.....+... +.|| .++++
T Consensus 118 ~~~~l~~P~~iavdp~~G~lY~tD~g~--------~~~I~r~~~d-G~~~~~l~~~--------------~~~P~GlalD 174 (628)
T 4a0p_A 118 VWKDLDSPRALALDPAEGFMYWTEWGG--------KPKIDRAAMD-GSERTTLVPN--------------VGRANGLTID 174 (628)
T ss_dssp ECSSCCCEEEEEEETTTTEEEEEECSS--------SCEEEEEETT-SCSCEEEECS--------------CSSEEEEEEE
T ss_pred EeCCCCCcccEEEccCCCeEEEeCCCC--------CCEEEEEeCC-CCceEEEECC--------------CCCcceEEEc
Confidence 2 2234588999999766666554320 1577778764 4333322211 1122 57888
Q ss_pred CCCCCEEEEec--CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccc---e
Q 005140 328 GGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEE---L 402 (712)
Q Consensus 328 ~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~---~ 402 (712)
+ +++.|..+. .+.|..+++..... ............+++.. + .|.+ + .-....|+.++..+.+. +
T Consensus 175 ~-~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~-~ly~-t-----D~~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 175 Y-AKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-D-YIYW-T-----DWSRRSIERANKTSGQNRTII 244 (628)
T ss_dssp T-TTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-T-EEEE-E-----ETTTTEEEEEETTTCCSCEEE
T ss_pred c-ccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-C-EEEE-e-----cCCCCEEEEEECCCCCceEEE
Confidence 8 877776665 78899999874322 11111222344555543 2 2322 1 12233455555332211 1
Q ss_pred ee-------eee-ee-----e--------cceeEEE-CcCCCEEEEEEccccc--cccc--ccccEEEE-------EEec
Q 005140 403 RQ-------KNL-FS-----V--------SDCKMYW-QSSGDYLAVKVDRYTK--TKKS--TYTGFELF-------RIKE 449 (712)
Q Consensus 403 ~~-------~~~-~~-----~--------~~~~~~~-s~~g~~l~~~~~~~~~--~~~~--~~~~~~l~-------~l~~ 449 (712)
.. ..+ +. . .+..+.. .|.|.+-+.+...... .+.. ......+| .+..
T Consensus 245 ~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s~~~~i~~i~l 324 (628)
T 4a0p_A 245 QGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVI 324 (628)
T ss_dssp ECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEEETTEEEEECC
T ss_pred ecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeeeccceEEEEec
Confidence 00 000 00 0 0001111 1223333332111100 0000 00111222 2211
Q ss_pred CCcceeEEEec-CCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccccCceeEEEE-e----CCCceeEEEEccC
Q 005140 450 RDIPIEVLELD-NKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQHAGRVSKLTT-L----KGKQANALFWSPS 523 (712)
Q Consensus 450 ~~~~~~~~~l~-~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~-~----~~~~v~~l~~spd 523 (712)
.........++ ..-..+.+++|.+....|+.+.... ..|+.+++..... ...+.. . .......+++.+.
T Consensus 325 ~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~--~~I~r~~~~g~~~---~~v~~~~~~~~~~~~~p~glAvD~~ 399 (628)
T 4a0p_A 325 DEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQ--NMIRKAQEDGSQG---FTVVVSSVPSQNLEIQPYDLSIDIY 399 (628)
T ss_dssp CTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTT--TEEEEEETTSCSC---EEEEC--------CCCEEEEEEETT
T ss_pred ccccCceEEEEehhcCCceEEEEecCCCeEEEEecCc--ceEEEEEcCCCCc---eEEEEcccccccccCCcceEEeecc
Confidence 11100001121 1124577899999878877776532 2677776643221 112211 0 1225688999998
Q ss_pred CCeEEEEeccCCCceEEEEECCcce--eeeeccccceeeEEECCCCCEEEEEEccceeccc--cEEEEEecCceeeee--
Q 005140 524 GRFIVLAGLKGFNGQLEFYNVDELE--TMATAEHFMATDVEWDPTGRYVATAVTSVHEMEN--GFNIWSFNGKLLYRT-- 597 (712)
Q Consensus 524 g~~l~~~~~~~~dg~v~iwd~~~~~--~~~~~~~~~v~~~~~spdg~~l~t~s~~~~~~d~--~v~iw~~~g~~~~~~-- 597 (712)
++.|+.+..+ .+.|.+.++++.. .+.........++++.|...+|..+... .. .|...+++|......
T Consensus 400 ~~nLY~td~~--~~~I~v~~~~G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g----~~~~~I~r~~~dG~~~~~l~~ 473 (628)
T 4a0p_A 400 SRYIYWTCEA--TNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQ----ERSPKIERAALDGTEREVLFF 473 (628)
T ss_dssp TTEEEEEETT--TTEEEEEETTSCEEEEEEECTTCCEEEEEEETTTTEEEEEEEE----TTEEEEEEEETTSCSCEEEEC
T ss_pred CCeEEEEcCC--CCEEEEEECCCCeEEEEEeCCCCceeeEEEecCCCeEEEeecC----CCCCeEEEEeCCCCCcEEEEe
Confidence 8877766532 6789999987432 2222334568899999954444444331 22 344455666543322
Q ss_pred -cccceeeeEEecCCCCCC
Q 005140 598 -LKDHFFQFLWRPRPPSFL 615 (712)
Q Consensus 598 -~~~~i~~~~w~p~~~~l~ 615 (712)
.......++..+....|+
T Consensus 474 ~~l~~P~gla~D~~~~~LY 492 (628)
T 4a0p_A 474 SGLSKPIALALDSRLGKLF 492 (628)
T ss_dssp SSCSCEEEEEEETTTTEEE
T ss_pred ccCCCccEEEEeCCCCEEE
Confidence 234566777777654443
No 490
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.59 E-value=0.028 Score=55.40 Aligned_cols=246 Identities=11% Similarity=0.065 Sum_probs=136.4
Q ss_pred ecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCceeeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--
Q 005140 261 FSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG-- 338 (712)
Q Consensus 261 ~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~-- 338 (712)
|+++|.+|....... .+.|...+. +|...+.+.... +--+++ +|.+|+.+.
T Consensus 21 ~~~~g~~iy~~n~~d--------~~~ly~~~~-dg~~~~~l~~~~-----------------~~~i~~-~g~~Iyy~~~~ 73 (302)
T 3s25_A 21 FCESDGEVFFSNTND--------NGRLYAMNI-DGSNIHKLSNDT-----------------AMYINA-DKNYVYYVRNN 73 (302)
T ss_dssp EEEETTEEEEEEGGG--------TTEEEEEET-TSCSCEEEEEEE-----------------EEEEEE-CSSEEEEEEEC
T ss_pred EEEeCCEEEEEeCCC--------CceEEEEcC-CCCCCEEccCCc-----------------eeeEEE-cCCEEEEEECC
Confidence 456777777765320 046666664 444344443221 234578 999988887
Q ss_pred C-------------CeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCccceeee
Q 005140 339 K-------------NMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQK 405 (712)
Q Consensus 339 d-------------~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 405 (712)
+ ..|+..++...... . +.. -....|+|++..|++... +.++...|+.+++.........
T Consensus 74 ~~~~~~~~~~~~n~~~Iy~i~~dg~~~~--~-l~~--~~~~~~s~~g~~Iy~~~~---~~~~~~~Iy~~~~dGs~~~~lt 145 (302)
T 3s25_A 74 NQKITSQTFFSYDRNSLCRIKRNGHGST--V-LDP--DPCIYASLIGNYIYYLHY---DTQTATSLYRIRIDGEEKKKIK 145 (302)
T ss_dssp C------CCSSCCSEEEEEEETTSCCCE--E-EEC--SCEEEEEEETTEEEEEEE---SSSSCEEEEEEETTSCCCEEEE
T ss_pred CCcccccceeccCCCeEEEEeCCCCcce--E-eec--CCccEEEEeCCEEEEEee---cCCCCceEEEEECCCCCeEEEe
Confidence 2 24555555544311 1 111 123478889999987310 1356677888887643321111
Q ss_pred eeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEEEEEcCC
Q 005140 406 NLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDS 485 (712)
Q Consensus 406 ~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~ 485 (712)
. ... ..++++|+.|+...... -.|+.+...+.....+ + .+... ..++|++.+|+......
T Consensus 146 ~-~~~----~~~~~~g~~iy~t~~g~----------~~Iy~~~l~g~~~~~l-~---~~~~~-~~~~P~g~~iy~t~~~~ 205 (302)
T 3s25_A 146 N-HYL----FTCNTSDRYFYYNNPKN----------GQLYRYDTASQSEALF-Y---DCNCY-KPVVLDDTNVYYMDVNR 205 (302)
T ss_dssp S-SCC----CCSEEETTEEEEECTTT----------CCEEEEETTTTEEEEE-E---CSCEE-EEEEEETTEEEEEEGGG
T ss_pred C-CCc----eEeeEECCEEEEEeCCC----------ceEEEEECCCCCEEEE-e---CCCcc-ceeeecCCEEEEEEcCC
Confidence 1 111 34678899888775522 2577777655543333 3 23332 34669999999887643
Q ss_pred CCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccccceeeEEECC
Q 005140 486 PRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEHFMATDVEWDP 565 (712)
Q Consensus 486 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~~~v~~~~~sp 565 (712)
. ..|..-+++... ...+....+ ..|+|+|++|+.+.... .+.|...+++......... ..+. .+++
T Consensus 206 ~-~~I~~~~ldG~~-------~~~Lt~~~~--~~~~~~g~~Iy~~~~~~-~~~i~~~~~DG~~r~~l~~-~~~~--~i~i 271 (302)
T 3s25_A 206 D-NAIVHVNINNPN-------PVVLTEANI--EHYNVYGSLIFYQRGGD-NPALCVVKNDGTGFKELAK-GEFC--NINV 271 (302)
T ss_dssp T-TEEEEECSSSCC-------CEECSCSCE--EEEEEETTEEEEEECSS-SCEEEEEETTSCCCEEEEE-SCEE--EEEE
T ss_pred C-cEEEEEECCCCC-------eEEEeCCCc--ceEEECCCEEEEEECCC-CcEEEEEECCCCccEEeeC-Cccc--eEEE
Confidence 2 256666664432 122223333 45899999998775322 4778888888533221111 1222 4566
Q ss_pred CCCEEEEEEc
Q 005140 566 TGRYVATAVT 575 (712)
Q Consensus 566 dg~~l~t~s~ 575 (712)
.+.+|+....
T Consensus 272 ~~d~Iy~td~ 281 (302)
T 3s25_A 272 TSQYVYFTDF 281 (302)
T ss_dssp CSSEEEEEET
T ss_pred eCCEEEEEEC
Confidence 7778777764
No 491
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.58 E-value=0.14 Score=56.10 Aligned_cols=162 Identities=9% Similarity=0.000 Sum_probs=93.2
Q ss_pred eeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEec-----CCCCceEEEEEeeCCCEEEEEEcCCCC
Q 005140 413 CKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELD-----NKNDKIIAFAWEPKGHRFAVIHGDSPR 487 (712)
Q Consensus 413 ~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~-----~h~~~v~~~~~sp~g~~l~~~~~d~~~ 487 (712)
..+.|.+....|+....... .|+++...+.....+-.. .....+..+++.+.+..|+.+....
T Consensus 343 ~~ld~d~~~~~iy~sD~~~~----------~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~-- 410 (628)
T 4a0p_A 343 RAIDYDPLDKQLYWIDSRQN----------MIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEAT-- 410 (628)
T ss_dssp EEEEEETTTTEEEEEETTTT----------EEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTT--
T ss_pred eEEEEecCCCeEEEEecCcc----------eEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCC--
Confidence 34566666666665543322 455555444332222111 0134678899999888777665432
Q ss_pred CeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCccee--eeeccccceeeEEECC
Q 005140 488 PDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELET--MATAEHFMATDVEWDP 565 (712)
Q Consensus 488 ~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~--~~~~~~~~v~~~~~sp 565 (712)
..|.+.+++... ...+..-.......|++.|...+|+.+..+...+.|...+++.... +....-...+.+++++
T Consensus 411 ~~I~v~~~~G~~----~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~ 486 (628)
T 4a0p_A 411 NVINVTRLDGRS----VGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDS 486 (628)
T ss_dssp TEEEEEETTSCE----EEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEET
T ss_pred CEEEEEECCCCe----EEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeC
Confidence 278888874321 1122222233578999999555666555432112677777774322 2233345678999999
Q ss_pred CCCEEEEEEccceeccccEEEEEecCcee
Q 005140 566 TGRYVATAVTSVHEMENGFNIWSFNGKLL 594 (712)
Q Consensus 566 dg~~l~t~s~~~~~~d~~v~iw~~~g~~~ 594 (712)
+++.|..+... .+.|...+++|...
T Consensus 487 ~~~~LYw~D~~----~~~I~~~~~dG~~r 511 (628)
T 4a0p_A 487 RLGKLFWADSD----LRRIESSDLSGANR 511 (628)
T ss_dssp TTTEEEEEETT----TTEEEEEETTSCSC
T ss_pred CCCEEEEEeCC----CCEEEEEeCCCCce
Confidence 98888777652 46777778777543
No 492
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.57 E-value=0.00013 Score=57.17 Aligned_cols=77 Identities=14% Similarity=0.204 Sum_probs=64.8
Q ss_pred CCEEEECCCCC-CCchhhhhhHHHHHHHhhcc-----CeeeeceEEEeccCCCCCcccEEEEEeCCHHHHHHHHHHhCCC
Q 005140 59 GNIIVVDNLPV-VPKEKFEKLEGVIRKIYSQI-----GVIKEDGLWMPVDPETQKSLGYCFIEYNTPQEAELAKEKTNGY 132 (712)
Q Consensus 59 ~~~~~v~~lp~-~~~~~~~~~~~~l~~~f~~~-----g~v~~~~~~~~~d~~~~~~~g~~fv~~~~~~~a~~a~~~~~~~ 132 (712)
.++|-+-|||- ++ ..-++.+..++ |.+++ |.+.-|- |=|+|+|.+...|.+|.-.|||+
T Consensus 21 ~rtiaL~~ipDtvn-------darIr~lve~~~~i~~g~i~K--I~L~pDH------~GAivef~d~~~AgKasLaL~G~ 85 (117)
T 2l9w_A 21 ETLICLFPLSDKVS-------PSLICQFLQEEIHINEKDIRK--ILLVSDF------NGAIIIFRDSKFAAKMLMILNGS 85 (117)
T ss_dssp TSCEEEECCCTTCC-------HHHHHHHHHHHTCCCTTTCSE--EEEETTT------TEEEEECSCHHHHHHHHHHHSSE
T ss_pred CcEEEEecCCCCCC-------HHHHHHHHhhhhccCccceeE--EEEecCC------CceEEEEccchhhHHHHhhcCCe
Confidence 56899999994 55 55588888888 99999 9998875 34999999999999999999999
Q ss_pred ccCCceEEEEEeecccccc
Q 005140 133 KLDRAHIFAVNMFDDFDKF 151 (712)
Q Consensus 133 ~~~~~~~l~v~~~~~~~~~ 151 (712)
.|+++ ++++....+..+.
T Consensus 86 ef~gr-~Lr~gTv~eL~~~ 103 (117)
T 2l9w_A 86 QFQGK-VIRSGTINDMKRY 103 (117)
T ss_dssp EETTE-EEEEECHHHHHHH
T ss_pred eecCe-EEEecCHHHHHhc
Confidence 99985 9999887775544
No 493
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.54 E-value=0.041 Score=59.95 Aligned_cols=78 Identities=10% Similarity=0.164 Sum_probs=46.2
Q ss_pred eEEEEEeecccccCceeEEEEeC-CCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceeeeeccc-cce--eeEEEC
Q 005140 489 DISFYSMRTAQHAGRVSKLTTLK-GKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETMATAEH-FMA--TDVEWD 564 (712)
Q Consensus 489 ~v~i~d~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~~~~~~-~~v--~~~~~s 564 (712)
.|.-||+.+++. +-+.. ..+...-.....|..+++++. ||.|+.||..+++++-+... ..+ +-+.|.
T Consensus 467 ~l~A~D~~tG~~------~W~~~~~~~~~~g~~~tagglvf~g~~---dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~ 537 (582)
T 1flg_A 467 SLRAMDPVSGKV------VWEHKEHLPLWAGVLATAGNLVFTGTG---DGYFKAFDAKSGKELWKFQTGSGIVSPPITWE 537 (582)
T ss_dssp EEEEECTTTCCE------EEEEEESSCCCSCCEEETTTEEEEECT---TSEEEEEETTTCCEEEEEECSSCCCSCCEEEE
T ss_pred eEEEEECCCCCE------EEEecCCCCCcccceEeCCCEEEEECC---CCcEEEEECCCCCEEEEecCCCCcccCceEEE
Confidence 677777766552 22211 122222222234667777877 99999999999998876332 122 236677
Q ss_pred CCCC-EEEEEEc
Q 005140 565 PTGR-YVATAVT 575 (712)
Q Consensus 565 pdg~-~l~t~s~ 575 (712)
.+|+ ||++.+.
T Consensus 538 ~~G~qYv~~~~G 549 (582)
T 1flg_A 538 QDGEQYLGVTVG 549 (582)
T ss_dssp ETTEEEEEEEEC
T ss_pred ECCEEEEEEEcc
Confidence 8887 5554443
No 494
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.40 E-value=0.16 Score=52.33 Aligned_cols=231 Identities=7% Similarity=-0.104 Sum_probs=118.8
Q ss_pred cEEEEEecCceEEeecccCcceeeee-cCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCCc----eeee
Q 005140 226 TYLATVHRQGAAVWGGANTFNRLMRY-AHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGK----VMRD 300 (712)
Q Consensus 226 ~~lat~~~~~i~iw~~~~~~~~~~~~-~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g~----~~~~ 300 (712)
.+|+.+....|+..++. ........ ....+..++|++.+..|....... +.|..+++.... ....
T Consensus 84 ~~ll~~~~~~I~~i~l~-~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~---------~~I~~~~~~g~~~~~~~~~~ 153 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLD-RSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQ---------RMICSTQLDRAHGVSSYDTV 153 (400)
T ss_dssp CEEEEEETTEEEEECTT-SCSCEEEECSCSCEEEEEEETTTTEEEEEETTT---------TEEEEEEC------CCCEEE
T ss_pred ceeEEeccceeEEEccC-CcceeEeccccCcceEEeeeeccCceEEEecCC---------CeEEEEEcccCCCCCcceEE
Confidence 46777777778888887 33332223 234589999999777776654431 678888875421 1111
Q ss_pred ccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEE
Q 005140 301 FKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLF 378 (712)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~ 378 (712)
+...... +. .+++.+ .+..|+... .+.|.+.++..................+++.|.+..|.+.
T Consensus 154 ~~~~~~~--------p~-----glavD~-~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~t 219 (400)
T 3p5b_L 154 ISRDIQA--------PD-----GLAVDW-IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWT 219 (400)
T ss_dssp ECSSCSC--------EE-----EEEEET-TTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEE
T ss_pred EeCCCCC--------cc-----cEEEEe-cCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEE
Confidence 1111110 11 345554 444444333 7889998887443221111233447889999977766541
Q ss_pred eecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEE
Q 005140 379 VPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLE 458 (712)
Q Consensus 379 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 458 (712)
......+|+.+++............-.....+++++++..|+++..... .|+.++..+.....+.
T Consensus 220 -----d~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~----------~I~~~d~dG~~~~~~~ 284 (400)
T 3p5b_L 220 -----DWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH----------SISSIDVNGGNRKTIL 284 (400)
T ss_dssp -----ECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTT----------EEEEEETTSCCCEEEE
T ss_pred -----eCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCC----------EEEEEeCCCCccEEEE
Confidence 1222356777776543211111101112345678888888877654322 4555544433322222
Q ss_pred e-cCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeeccc
Q 005140 459 L-DNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQ 499 (712)
Q Consensus 459 l-~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~ 499 (712)
- ...-.....+++ ++..++.+.... ..|..++..++.
T Consensus 285 ~~~~~l~~P~gl~v--~~~~lywtd~~~--~~V~~~~~~~G~ 322 (400)
T 3p5b_L 285 EDEKRLAHPFSLAV--FEDKVFWTDIIN--EAIFSANRLTGS 322 (400)
T ss_dssp ECSSTTSSEEEEEE--ETTEEEEEESSS--CSEEEEESSSCC
T ss_pred eCCCCCCCCEEEEE--eCCEEEEecCCC--CeEEEEEcCCCC
Confidence 1 111233445555 455555555432 167777754443
No 495
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.39 E-value=0.081 Score=52.64 Aligned_cols=201 Identities=5% Similarity=-0.117 Sum_probs=108.6
Q ss_pred eEEecCCCCCEEEEec--CCeEEEEEcCCceecc-cccccccCeeeEEECCCCCeEEEEeecCCCCCCCeEEEEEecCCc
Q 005140 323 VFRWGGGKDKYFAKLG--KNMISVYETESFTLID-KKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSK 399 (712)
Q Consensus 323 ~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~sp~~~~la~~~~~~~~~~~~~~i~~~~~~~~ 399 (712)
.+.|.+ .+..|..+. .+.|..+++....... ...........+++.+.+..|.+. .....+|..++....
T Consensus 39 ~ld~d~-~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~------d~~~~~I~~~~~dG~ 111 (318)
T 3sov_A 39 AVDFVF-SHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWT------DSETNRIEVSNLDGS 111 (318)
T ss_dssp EEEEEG-GGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEE------ETTTTEEEEEETTSC
T ss_pred EEEEEe-CCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEE------ECCCCEEEEEECCCC
Confidence 588988 666665554 7889999887553211 111122346778888766555441 223346777776543
Q ss_pred cceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEecCCCCceEEEEEeeCCCEEE
Q 005140 400 EELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFA 479 (712)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~h~~~v~~~~~sp~g~~l~ 479 (712)
.........-.....++..|.+.+|+....... -.|+.+...+.....+ +...-.....++|+|++..|+
T Consensus 112 ~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~---------~~I~r~~~dG~~~~~~-~~~~l~~Pnglavd~~~~~lY 181 (318)
T 3sov_A 112 LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEV---------PKIERAGMDGSSRFII-INSEIYWPNGLTLDYEEQKLY 181 (318)
T ss_dssp SCEEEECSSCSSEEEEEEEGGGTEEEEEECSSS---------CEEEEEETTSCSCEEE-ECSSCSCEEEEEEETTTTEEE
T ss_pred cEEEEEeCCCCCccEEEEeCCCCEEEEEecCCC---------CEEEEEEcCCCCeEEE-EECCCCCccEEEEeccCCEEE
Confidence 211111001112234566777666666543211 2566666554332222 212234567899999888888
Q ss_pred EEEcCCCCCeEEEEEeecccccCceeEEEEeCCCceeEEEEccCCCeEEEEeccCCCceEEEEECCcceee
Q 005140 480 VIHGDSPRPDISFYSMRTAQHAGRVSKLTTLKGKQANALFWSPSGRFIVLAGLKGFNGQLEFYNVDELETM 550 (712)
Q Consensus 480 ~~~~d~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~~~~~~~~dg~v~iwd~~~~~~~ 550 (712)
.+.... ..|..++++.... ..+..-.......+++. +..++.+..+ .+.|..++..+++..
T Consensus 182 ~aD~~~--~~I~~~d~dG~~~----~~~~~~~~~~P~glav~--~~~lywtd~~--~~~V~~~~~~~G~~~ 242 (318)
T 3sov_A 182 WADAKL--NFIHKSNLDGTNR----QAVVKGSLPHPFALTLF--EDILYWTDWS--THSILACNKYTGEGL 242 (318)
T ss_dssp EEETTT--TEEEEEETTSCSC----EEEECSCCSCEEEEEEE--TTEEEEEETT--TTEEEEEETTTCCSC
T ss_pred EEECCC--CEEEEEcCCCCce----EEEecCCCCCceEEEEe--CCEEEEEecC--CCeEEEEECCCCCce
Confidence 876543 2888888854221 12222112234566664 3445444431 678888988766543
No 496
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.37 E-value=0.3 Score=55.01 Aligned_cols=229 Identities=8% Similarity=-0.100 Sum_probs=115.9
Q ss_pred EEEEEecCceEEeecccCccee-eeecCCCeeEEEecCCCCEEEEEcCCCCCCCcCCCccEEEEEEccCC----ceeeec
Q 005140 227 YLATVHRQGAAVWGGANTFNRL-MRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTG----KVMRDF 301 (712)
Q Consensus 227 ~lat~~~~~i~iw~~~~~~~~~-~~~~~~~v~~i~~Spdg~~l~t~s~d~~~~~~~~~~~~I~iwd~~~g----~~~~~~ 301 (712)
+|+.+....|+..++. ..... .......+..|+|++.+..|+...... +.|+.+++... .....+
T Consensus 397 ~Ll~an~~~Ir~i~l~-~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~---------~~I~~~~l~g~~~~~~~~~vi 466 (791)
T 3m0c_C 397 YLFFTNRHEVRKMTLD-RSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQ---------RMICSTQLDRAHGVSSYDTVI 466 (791)
T ss_dssp EEEEECBSSEEEECTT-SCCCEEEECSCSSEEEEEEETTTTEEEEEETTT---------TEEEEEEC--------CEEEE
T ss_pred ccccccccceeEeecc-CCcceeeecCCCceEEEeecccCCeeEEeeccc---------eeEEEEeccCCCCCcceeEEE
Confidence 5666666667777776 33222 222344588999999766665554431 67888887532 111112
Q ss_pred cCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec--CCeEEEEEcCCceecccccccccCeeeEEECCCCCeEEEEe
Q 005140 302 KGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG--KNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFV 379 (712)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~ 379 (712)
..... .+. .+++.+ .+..|+.+. .+.|.+.++..................|++.|.+..|.+
T Consensus 467 ~~~l~--------~P~-----GLAvD~-~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYw-- 530 (791)
T 3m0c_C 467 SRDIQ--------APD-----GLAVDW-IHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYW-- 530 (791)
T ss_dssp CSSCS--------CCC-----EEEEET-TTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEE--
T ss_pred ecCCC--------Ccc-----eeeeee-cCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEE--
Confidence 11111 111 356665 555444443 889999998744321111123345789999998766654
Q ss_pred ecCCCCCCCeEEEEEecCCccceeeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecCCcceeEEEe
Q 005140 380 PELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLEL 459 (712)
Q Consensus 380 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l 459 (712)
.-.+...+|+.+++............-.....|+..+.+..|+++-.... .|+.+...+.....+.-
T Consensus 531 ---tD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~----------~I~~~d~dG~~~~~v~~ 597 (791)
T 3m0c_C 531 ---TDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH----------SISSIDVNGGNRKTILE 597 (791)
T ss_dssp ---EECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT----------EEEEEETTSCSCEEEEE
T ss_pred ---ecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCC----------cEEEEecCCCceEEEec
Confidence 11223357888777543321111101112334566777777777643322 45555544433322221
Q ss_pred c-CCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecc
Q 005140 460 D-NKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTA 498 (712)
Q Consensus 460 ~-~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~ 498 (712)
. ..-....+|++ .+.+|+.+.... ..|...+..++
T Consensus 598 ~~~~l~~P~glav--~~~~lYwtD~~~--~~I~~~dk~tG 633 (791)
T 3m0c_C 598 DEKRLAHPFSLAV--FEDKVFWTDIIN--EAIFSANRLTG 633 (791)
T ss_dssp CTTTTSSEEEEEE--ETTEEEEEETTT--TEEEEEETTTC
T ss_pred CCCccCCCCEEEE--eCCEEEEEECCC--CEEEEEeCCCC
Confidence 0 11123334444 555666665533 16666665444
No 497
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.34 E-value=0.085 Score=55.44 Aligned_cols=160 Identities=7% Similarity=0.043 Sum_probs=84.1
Q ss_pred eEEecCCC--CCEEEEec-CCeEEEEEcCCceecccccc---cccCeeeEEE-------CCCCCeEEEEeecCCCCCCCe
Q 005140 323 VFRWGGGK--DKYFAKLG-KNMISVYETESFTLIDKKSL---KVENVMDFSW-------SPTDPIISLFVPELGGGNQPA 389 (712)
Q Consensus 323 ~~~~s~~d--g~~la~~~-d~~i~iwd~~~~~~~~~~~~---~~~~v~~~~~-------sp~~~~la~~~~~~~~~~~~~ 389 (712)
.++|+| . ++++++.. .+.|++.|+.++.+...... .......++| ++++..|.+.....+......
T Consensus 143 ~la~dp-~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~ 221 (496)
T 3kya_A 143 RLAFDP-LNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESP 221 (496)
T ss_dssp EEEEET-TEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEE
T ss_pred EEEEcc-CCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCc
Confidence 478887 4 44444444 57788899887655422111 2234788999 999986655211100001134
Q ss_pred EEEEEecCC-ccce-----eeeeeeeecceeEEECcCCCEEEEEEcccccccccccccEEEEEEecC---------Cc--
Q 005140 390 RVSLVQIPS-KEEL-----RQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKER---------DI-- 452 (712)
Q Consensus 390 ~i~~~~~~~-~~~~-----~~~~~~~~~~~~~~~s~~g~~l~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~-- 452 (712)
.|..++... .... .....+ .....++.+|++.+|++...... .++.++.. ..
T Consensus 222 ~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g----------~V~r~d~~~~~~~~~tg~~~t 290 (496)
T 3kya_A 222 SVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKG----------QVFRLDLVDYFKTIKNGGSWD 290 (496)
T ss_dssp EEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTT----------EEEEECHHHHHHHHHTTCCCC
T ss_pred eEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCC----------EEEEEecccccccccCceeec
Confidence 466664322 1111 111111 13345567887777766554432 34444322 11
Q ss_pred ---c-----e-eEEEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeec
Q 005140 453 ---P-----I-EVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRT 497 (712)
Q Consensus 453 ---~-----~-~~~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~ 497 (712)
+ . ....+ +.......++|+|+|++|+++.... ..|+.++...
T Consensus 291 p~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~--h~I~kid~dg 341 (496)
T 3kya_A 291 PIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINN--HYFMRSDYDE 341 (496)
T ss_dssp CBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTT--TEEEEEEEET
T ss_pred ccccccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCC--CEEEEEecCC
Confidence 0 1 11223 2234567899999999777765533 2788877643
No 498
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.33 E-value=0.033 Score=60.62 Aligned_cols=75 Identities=15% Similarity=0.081 Sum_probs=46.2
Q ss_pred CceEEEEECCcceeeeeccc-cceeeEEECCCCCEEEEEEccceeccccEEEEEec-Cceeeeeccc-ce--eeeEEecC
Q 005140 536 NGQLEFYNVDELETMATAEH-FMATDVEWDPTGRYVATAVTSVHEMENGFNIWSFN-GKLLYRTLKD-HF--FQFLWRPR 610 (712)
Q Consensus 536 dg~v~iwd~~~~~~~~~~~~-~~v~~~~~spdg~~l~t~s~~~~~~d~~v~iw~~~-g~~~~~~~~~-~i--~~~~w~p~ 610 (712)
+|.|..||+.+++.+-+... ..+........+..+++++. |+.++.||.. |+.+.+.... .+ .-+.+.++
T Consensus 443 ~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~g~~-----dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~ 517 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATL-----DGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFK 517 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECT-----TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred CCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEEEcC-----CCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEEC
Confidence 58899999999888765332 22333333334666777777 8999999975 7766555331 11 22345566
Q ss_pred CCCCC
Q 005140 611 PPSFL 615 (712)
Q Consensus 611 ~~~l~ 615 (712)
++.++
T Consensus 518 G~~yv 522 (571)
T 2ad6_A 518 GKQYI 522 (571)
T ss_dssp TEEEE
T ss_pred CEEEE
Confidence 65443
No 499
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=97.30 E-value=0.23 Score=52.00 Aligned_cols=304 Identities=11% Similarity=0.063 Sum_probs=156.9
Q ss_pred cEEEEEEccCCceeeeccCCCcccccC--C---------CC--CcCC-CCcCeEEecCC--CCCEEEEec--CCeEEEEE
Q 005140 285 VVINIFDVRTGKVMRDFKGSADEFAVG--G---------TG--GVAG-VSWPVFRWGGG--KDKYFAKLG--KNMISVYE 346 (712)
Q Consensus 285 ~~I~iwd~~~g~~~~~~~~~~~~~~~~--~---------~~--~~~~-~~~~~~~~s~~--dg~~la~~~--d~~i~iwd 346 (712)
|.|+|+-+.+++.++.+..-.....+| . .+ -..| .+.|.+++..+ ||+||..-. +..|-..+
T Consensus 80 G~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan~RvAri~ 159 (638)
T 3sbq_A 80 GEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKANSRVARIR 159 (638)
T ss_dssp CCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTTTEEEEEE
T ss_pred ceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCCcceEEEE
Confidence 889999999999888765432221100 0 00 0122 33456666543 677877776 77788888
Q ss_pred cCCceecccccc-cccCeeeEEEC--CCCCeEEEEe----e--cCCCC---CCC---eEEEEEecCCccceeeeeeeeec
Q 005140 347 TESFTLIDKKSL-KVENVMDFSWS--PTDPIISLFV----P--ELGGG---NQP---ARVSLVQIPSKEELRQKNLFSVS 411 (712)
Q Consensus 347 ~~~~~~~~~~~~-~~~~v~~~~~s--p~~~~la~~~----~--~~~~~---~~~---~~i~~~~~~~~~~~~~~~~~~~~ 411 (712)
+..++.-....+ ...++.++.+- |...++.... | ..+.. +.. .....++..+.+..-+.. ...+
T Consensus 160 l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Qv~-v~gn 238 (638)
T 3sbq_A 160 LDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQVI-VDGN 238 (638)
T ss_dssp TTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEEEE-ESSC
T ss_pred CCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEEEE-cCCC
Confidence 887765432222 33457777776 6767766431 1 11000 000 111112222222111111 1111
Q ss_pred ceeEEECcCCCEEEEEEcccccc----------------------------c-ccccc--cEEEEEEec----CCcceeE
Q 005140 412 DCKMYWQSSGDYLAVKVDRYTKT----------------------------K-KSTYT--GFELFRIKE----RDIPIEV 456 (712)
Q Consensus 412 ~~~~~~s~~g~~l~~~~~~~~~~----------------------------~-~~~~~--~~~l~~l~~----~~~~~~~ 456 (712)
--.....++|.+.++.+-+.... + ....+ .+.+.+.+. .......
T Consensus 239 ld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~~~~~~~~ 318 (638)
T 3sbq_A 239 LDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGKDSKFTRY 318 (638)
T ss_dssp CCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTBCCSSEEE
T ss_pred hhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccccCCceEEE
Confidence 12234577888877765433210 0 00111 233333322 1111111
Q ss_pred EEecCCCCceEEEEEeeCCCEEEEEEcCCCCCeEEEEEeecccc-------cCceeEEEEeC-CCceeEEEEccCCCeEE
Q 005140 457 LELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMRTAQH-------AGRVSKLTTLK-GKQANALFWSPSGRFIV 528 (712)
Q Consensus 457 ~~l~~h~~~v~~~~~sp~g~~l~~~~~d~~~~~v~i~d~~~~~~-------~~~~~~~~~~~-~~~v~~l~~spdg~~l~ 528 (712)
+.. ....+.+..+|||+++++++.-.+ ++.++++..... ..+-..+.... +-.....+|.++|.-..
T Consensus 319 iP~---pksPHGv~vsPDGkyi~v~GKLsp--tvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYT 393 (638)
T 3sbq_A 319 VPV---PKNPHGCNTSSDGKYFIAAGKLSP--TCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYT 393 (638)
T ss_dssp EEE---SSSCCCEEECTTSCEEEEECTTSS--BEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEE
T ss_pred EeC---CCCCcceeeCCCCCEEEEcCCCCC--eEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEe
Confidence 222 344566889999999998877443 899999874211 01111233333 33457889999993333
Q ss_pred EEeccCCCceEEEEECCcc----------eeeee-ccccceeeEE------ECCCCCEEEEEEcc---ce-----ecccc
Q 005140 529 LAGLKGFNGQLEFYNVDEL----------ETMAT-AEHFMATDVE------WDPTGRYVATAVTS---VH-----EMENG 583 (712)
Q Consensus 529 ~~~~~~~dg~v~iwd~~~~----------~~~~~-~~~~~v~~~~------~spdg~~l~t~s~~---~~-----~~d~~ 583 (712)
+.-. |.+|.-|++... .++.. .-+..+-.+. -.|||+||++...- +. --...
T Consensus 394 tlfi---dSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen 470 (638)
T 3sbq_A 394 TLFI---DSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPEN 470 (638)
T ss_dssp EETT---TTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEE
T ss_pred eeee---cceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCc
Confidence 3334 899999999743 22322 1122333333 36899999998752 10 00224
Q ss_pred EEEEEecCceeeee
Q 005140 584 FNIWSFNGKLLYRT 597 (712)
Q Consensus 584 v~iw~~~g~~~~~~ 597 (712)
-++.|++|..+.-.
T Consensus 471 ~QlidIsGdkM~lv 484 (638)
T 3sbq_A 471 DQLIDISGDEMKLV 484 (638)
T ss_dssp EEEEECSSSSCEEE
T ss_pred ceeEecCCCceEEE
Confidence 58899998766544
No 500
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.28 E-value=0.056 Score=54.75 Aligned_cols=107 Identities=10% Similarity=0.149 Sum_probs=57.5
Q ss_pred cceEEEcCCCcEEEEEecCceEEeecccCcceeeeec-----CCCeeEEEecCC---CCEEEEEcCCCCCCCcCCCccEE
Q 005140 216 ESFVQWSPLGTYLATVHRQGAAVWGGANTFNRLMRYA-----HPQVKLIDFSPG---EKYLVTYSSHEPSNPRDANRVVI 287 (712)
Q Consensus 216 v~~v~~Spdg~~lat~~~~~i~iw~~~~~~~~~~~~~-----~~~v~~i~~Spd---g~~l~t~s~d~~~~~~~~~~~~I 287 (712)
-..++|.|+|+++++-....|.+++ .+....+.... ......|+|+|+ +.+|..+...... .....|
T Consensus 33 P~~ia~~pdG~l~V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~----~~~~~v 107 (352)
T 2ism_A 33 PWALAFLPDGGMLIAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEG----GLRNQV 107 (352)
T ss_dssp EEEEEECTTSCEEEEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTT----SSEEEE
T ss_pred ceEEEEcCCCeEEEEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCC----CCccEE
Confidence 3579999999977665443377777 42333333222 235899999998 5555444332000 011467
Q ss_pred EEEEccCCce------eeeccCCCcccccCCCCCcCCCCcCeEEecCCCCCEEEEec
Q 005140 288 NIFDVRTGKV------MRDFKGSADEFAVGGTGGVAGVSWPVFRWGGGKDKYFAKLG 338 (712)
Q Consensus 288 ~iwd~~~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dg~~la~~~ 338 (712)
..|+...+.. +..+....... . ....+.|.| ||.++++.+
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~--------h--~~~~l~~~p-dG~Lyv~~G 153 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGL--------H--SGGRIAFGP-DGMLYVTTG 153 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCC--------C--CCCCEEECT-TSCEEEECC
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCC--------c--CCceEEECC-CCCEEEEEC
Confidence 7787654321 11122100000 0 011589999 998777654
Done!