BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005141
(712 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FIG9|ARC6_ARATH Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6,
chloroplastic OS=Arabidopsis thaliana GN=ARC6 PE=1 SV=1
Length = 801
Score = 809 bits (2089), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/721 (60%), Positives = 527/721 (73%), Gaps = 36/721 (4%)
Query: 3 MQALGHIDFGLRSPLLVPAPQPRTSSKRPSISKLNTTTVSSASKWAHRLLADFQFTTADN 62
M+AL H+ GL SP + P T+ R S + +TT+ SASKWA RLL+DF FT+ +
Sbjct: 1 MEALSHVGIGL-SPFQLCRLPPATTKLRRSHN--TSTTICSASKWADRLLSDFNFTSDSS 57
Query: 63 SSLSSSSNTTVTLTPPPPTPTN--RHVSIPIDFYQALGAETHFLGDGIRRAYEARISKPP 120
SS +++ TT TL PPP+ RHV IPIDFYQ LGA+THFL DGIRRA+EAR+SKPP
Sbjct: 58 SSSFATATTTATLVSPPPSIDRPERHVPIPIDFYQVLGAQTHFLTDGIRRAFEARVSKPP 117
Query: 121 QYGFSPDALISRRQILQAACETLANASSRREYNQGLADDHADTILTEVPWDKVPGALLVL 180
Q+GFS DALISRRQILQAACETL+N SRREYN+GL DD T++T+VPWDKVPGAL VL
Sbjct: 118 QFGFSDDALISRRQILQAACETLSNPRSRREYNEGLLDDEEATVITDVPWDKVPGALCVL 177
Query: 181 QEAGETEVVLRIGESLLRERLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLE 240
QE GETE+VLR+GE+LL+ERLPKSFKQDVVL MALA++D+SRDAMA +PPD+I G E +E
Sbjct: 178 QEGGETEIVLRVGEALLKERLPKSFKQDVVLVMALAFLDVSRDAMALDPPDFITGYEFVE 237
Query: 241 RALKLLQEEGASSLAPDLQAQIDETLEEINPRCVLELLGLPLSGEYQARREEGLHGMLNI 300
ALKLLQEEGASSLAPDL+AQIDETLEEI PR VLELLGLPL +Y A+R GL G+ NI
Sbjct: 238 EALKLLQEEGASSLAPDLRAQIDETLEEITPRYVLELLGLPLGDDYAAKRLNGLSGVRNI 297
Query: 301 LWAVGGGGATAIAGGFTRESFMNEAFLRMTSAEQVKLFSATPNSIPAETFEAYGVALALV 360
LW+VGGGGA+A+ GG TRE FMNEAFLRMT+AEQV LF ATP++IPAE+FE Y VALALV
Sbjct: 298 LWSVGGGGASALVGGLTREKFMNEAFLRMTAAEQVDLFVATPSNIPAESFEVYEVALALV 357
Query: 361 AQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGK 420
AQAF+GK+PHL+ DAD F+ LQQ KV + +Y E++F LERGLC+LL+GK
Sbjct: 358 AQAFIGKKPHLLQDADKQFQQLQQAKVMAMEIPAMLYDTRNNWEIDFGLERGLCALLIGK 417
Query: 421 LDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGLCKLLETWLAEVVFPRFRDT 480
+DECR+WLGLDS+ S YRNPAIV+FVLENS D++DLPGLCKLLETWLA VVFPRFRDT
Sbjct: 418 VDECRMWLGLDSEDSQYRNPAIVEFVLENSNRDDNDDLPGLCKLLETWLAGVVFPRFRDT 477
Query: 481 SDIRFKLGDYYDDPTVLRYLERLEGNGSSPLAAAAAIVRIGATEATAVLDHVKSSTIQAL 540
D +FKLGDYYDDP VL YLER+E SPLAAAAA+ RIGA +HVK+S +QAL
Sbjct: 478 KDKKFKLGDYYDDPMVLSYLERVEVVQGSPLAAAAAMARIGA-------EHVKASAMQAL 530
Query: 541 QKVFPLGQGDK-------------AVKYVEHGETYDPVPVVETEESLTSDQNNFAFTTDA 587
QKVFP D+ +V V + D P V E++ +N F T+
Sbjct: 531 QKVFPSRYTDRNSAEPKDVQETVFSVDPVGNNVGRDGEPGVFIAEAVRPSEN---FETND 587
Query: 588 YGT------SSSDDIHGEQSITDKIKDVSVKIMCAGVAIGLVTLVGLKYLPTRNISSVQQ 641
Y SS D+ E S+ D +K+ SVKI+ AGVAIGL++L KY ++ SS Q+
Sbjct: 588 YAIRAGVSESSVDETTVEMSVADMLKEASVKILAAGVAIGLISLFSQKYF-LKSSSSFQR 646
Query: 642 KEIGLAKASDIIDAGPLLDEKLGQELPRMDARLAEDIVRKWQNIKSQAFGPDHSLGKLPE 701
K++ + SD+ G + + + LPRMDAR AE+IV KWQ IKS AFGPDH + LPE
Sbjct: 647 KDMVSSMESDVATIGSVRADD-SEALPRMDARTAENIVSKWQKIKSLAFGPDHRIEMLPE 705
Query: 702 V 702
V
Sbjct: 706 V 706
>sp|Q8VY16|CDP1_ARATH Plastid division protein CDP1, chloroplastic OS=Arabidopsis
thaliana GN=CDP1 PE=1 SV=2
Length = 819
Score = 103 bits (257), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 112/421 (26%), Positives = 174/421 (41%), Gaps = 48/421 (11%)
Query: 87 VSIPIDFYQALGAETHFLGDGIRRAYEARISKPPQYGFSPDALISRRQILQAACETLANA 146
+ +P+ YQ +G D + ++ + G++ +A +R+ +L + L
Sbjct: 93 IELPVTCYQLIGVSEQAEKDEVVKSVINLKKTDAEEGYTMEAAAARQDLLMDVRDKLLFE 152
Query: 147 SSRREYNQGLADDHADTILTEVPWDKVPGALLVLQEAGETEVVLRIGESLLRERLPKSFK 206
S EY L + A +PW +PGAL +LQE G+ ++VL IG + LR K +
Sbjct: 153 S---EYAGNLKEKIAPKSPLRIPWAWLPGALCLLQEVGQEKLVLDIGRAALRNLDSKPYI 209
Query: 207 QDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERALKLLQEE-GASSLAPDLQAQIDET 265
D+ L+MALA I++ A N G E L RA L+ + LA L QI+E+
Sbjct: 210 HDIFLSMALAECAIAKAAFEVNKVSQ--GFEALARAQSFLKSKVTLGKLA--LLTQIEES 265
Query: 266 LEEINPRCVLELLGLPLSGEYQARREEGLHGMLNILWAVGGGGATAIAGGFTRESFMNEA 325
LEE+ P C L+LLGLP + E RR + + +L G A F+++A
Sbjct: 266 LEELAPPCTLDLLGLPRTPENAERRRGAIAALRELL--RQGLSVEASCQIQDWPCFLSQA 323
Query: 326 FLRMTSAEQVKLFSATPNSIPAETFEA---------------YGVALALVAQAFVGKQPH 370
R+ + E V L +I + ++ Y V L +A F GKQ
Sbjct: 324 ISRLLATEIVDLLPWDDLAITRKNKKSLESHNQRVVIDFNCFYMVLLGHIAVGFSGKQNE 383
Query: 371 LIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGL 430
I A + + L I E +++F E CS L+ + E L
Sbjct: 384 TINKAKTICECL---------------IASEGVDLKF--EEAFCSFLLKQGSEAE---AL 423
Query: 431 DSDKSPYRNPAIVDFVLENSKEADDNDLPGLCKLLETWLAEVVFPRFRDTSDIRFKLGDY 490
+ K N D + NS ++ LE WL E V F DT L ++
Sbjct: 424 EKLKQLESNS---DSAVRNSILGKESRSTSATPSLEAWLMESVLANFPDTRGCSPSLANF 480
Query: 491 Y 491
+
Sbjct: 481 F 481
Score = 42.4 bits (98), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 670 MDARLAEDIVRKWQNIKSQAFGPDHSLGKLPEV 702
MD AE++VR+W+N+K++A GP H + L EV
Sbjct: 688 MDTEEAEELVRQWENVKAEALGPTHQVYSLSEV 720
>sp|P29742|CLH_DROME Clathrin heavy chain OS=Drosophila melanogaster GN=Chc PE=2 SV=1
Length = 1678
Score = 40.4 bits (93), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 82/204 (40%), Gaps = 37/204 (18%)
Query: 372 IADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCS---------------- 415
I +N ++L++N+ R +G + H A ERGLC
Sbjct: 885 IDSNNNPERYLKENQYYDSRVVGRYCEKRDPHLACVAYERGLCDRELIAVCNENSLFKSE 944
Query: 416 --LLVGKLDECRLWLGLDSDKSPYRNPAI---VDFVLENSKEADD----------NDLPG 460
LVG+ D LW + S+ +PY+ I V L +++ DD DLP
Sbjct: 945 ARYLVGRRD-AELWAEVLSESNPYKRQLIDQVVQTALSETQDPDDISVTVKAFMTADLPN 1003
Query: 461 -LCKLLE-TWLAEVVFPRFRDTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPLAAAAAIV 518
L +LLE L VF R+ ++ D V+ Y+ RLE N +P A AI
Sbjct: 1004 ELIELLEKIILDSSVFSDHRNLQNLLILTAIKADRTRVMDYINRLE-NYDAPDIANIAIS 1062
Query: 519 RIGATEATAVLDH--VKSSTIQAL 540
EA A+ V +S IQ L
Sbjct: 1063 NQLYEEAFAIFKKFDVNTSAIQVL 1086
>sp|B7UWJ2|DER_PSEA8 GTPase Der OS=Pseudomonas aeruginosa (strain LESB58) GN=der PE=3
SV=1
Length = 493
Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 4/132 (3%)
Query: 342 PNSIPAETFEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLE 401
P IP + E G+ +A++ + VGK L+ + + ++ T RD SIYIP E
Sbjct: 186 PTRIPGPS-EKDGIKIAIIGRPNVGKST-LVNRMLGEERVIVYDQAGTTRD--SIYIPFE 241
Query: 402 KHEMEFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGL 461
++E ++ L GK+ E + ++ +V FV++ + ++DL L
Sbjct: 242 RNEEKYTLIDTAGVRRRGKIFEAVEKFSVVKTLQAIQDANVVIFVMDAREGVVEHDLNLL 301
Query: 462 CKLLETWLAEVV 473
+LET A V+
Sbjct: 302 GFVLETGRALVI 313
>sp|C1DE52|DER_AZOVD GTPase Der OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303)
GN=der PE=3 SV=1
Length = 491
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 101/246 (41%), Gaps = 25/246 (10%)
Query: 342 PNSIPAETFEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLE 401
P +P + E G+ +A++ + VGK L+ + + ++ T RD SIYIP E
Sbjct: 184 PKRVPGPS-EKDGIKIAIIGRPNVGKST-LVNRMLGEERVIVYDQAGTTRD--SIYIPFE 239
Query: 402 KHEMEFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGL 461
+ E ++ L GK+ E + ++ +V FV++ + ++DL L
Sbjct: 240 RDEDKYTLIDTAGVRRRGKIFEAVEKFSVVKTLQAIQDANVVIFVMDAREGVVEHDLNLL 299
Query: 462 CKLLETWLAEVVF--------PRFRDTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPL-- 511
+LET A V+ P RD I + + D + ++ L G G L
Sbjct: 300 GFVLETGRALVIALNKWDGMEPGQRDYVKIELERRLMFADFADIHFISALHGTGVGHLYK 359
Query: 512 ----AAAAAIVRIGATEATAVLDHVKSSTIQALQKVFPLGQGDK-AVKYVEHGETYDPVP 566
A +A+ R + T +L+ +Q Q PL G + ++Y G P+
Sbjct: 360 SVQAAFQSAVTRWPTSRLTRILE----DAVQEHQP--PLVNGRRIKLRYAHLGGANPPLI 413
Query: 567 VVETEE 572
V+ +
Sbjct: 414 VIHGNQ 419
>sp|Q9HXJ8|DER_PSEAE GTPase Der OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C
/ PRS 101 / LMG 12228) GN=der PE=3 SV=1
Length = 493
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 4/132 (3%)
Query: 342 PNSIPAETFEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLE 401
P IP + E G+ +A++ + VGK L+ + + ++ T RD SIYIP E
Sbjct: 186 PTRIPGPS-EKDGIKIAIIGRPNVGKST-LVNRMLGEERVIVYDQAGTTRD--SIYIPFE 241
Query: 402 KHEMEFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGL 461
++E ++ L GK+ E + ++ +V FV++ + ++DL L
Sbjct: 242 RNEEKYTLIDTAGVRRRGKIFEAVEKFSVVKTLQAIQDANVVIFVMDAREGVVEHDLNLL 301
Query: 462 CKLLETWLAEVV 473
+LET A V+
Sbjct: 302 GFVLETGRALVI 313
>sp|A6V0W4|DER_PSEA7 GTPase Der OS=Pseudomonas aeruginosa (strain PA7) GN=der PE=3 SV=1
Length = 493
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 4/132 (3%)
Query: 342 PNSIPAETFEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLE 401
P IP + E G+ +A++ + VGK L+ + + ++ T RD SIYIP E
Sbjct: 186 PTRIPGPS-EKDGIKIAIIGRPNVGKST-LVNRMLGEERVIVYDQAGTTRD--SIYIPFE 241
Query: 402 KHEMEFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGL 461
++E ++ L GK+ E + ++ +V FV++ + ++DL L
Sbjct: 242 RNEEKYTLIDTAGVRRRGKIFEAVEKFSVVKTLQAIQDANVVIFVMDAREGVVEHDLNLL 301
Query: 462 CKLLETWLAEVV 473
+LET A V+
Sbjct: 302 GFVLETGRALVI 313
>sp|P49951|CLH1_BOVIN Clathrin heavy chain 1 OS=Bos taurus GN=CLTC PE=1 SV=1
Length = 1675
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 70/169 (41%), Gaps = 21/169 (12%)
Query: 406 EFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADD---------- 455
E +L + L LV + D LW + + +PYR P I V E D
Sbjct: 936 ENSLFKSLSRYLVRRKDP-ELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKA 994
Query: 456 ---NDLPG-LCKLLETW-LAEVVFPRFRDTSDIRFKLGDYYDDPTVLRYLERLEGNGSSP 510
DLP L +LLE L VF R+ ++ D V+ Y+ RL+ N +P
Sbjct: 995 FMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLD-NYDAP 1053
Query: 511 LAAAAAIVRIGATEATAVLDH--VKSSTIQALQKVFPLGQGDKAVKYVE 557
A AI EA A+ V +S +Q L + +G D+A ++ E
Sbjct: 1054 DIANIAISNELFEEAFAIFRKFDVNTSAVQVL--IEHIGNLDRAYEFAE 1100
>sp|Q00610|CLH1_HUMAN Clathrin heavy chain 1 OS=Homo sapiens GN=CLTC PE=1 SV=5
Length = 1675
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 70/169 (41%), Gaps = 21/169 (12%)
Query: 406 EFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADD---------- 455
E +L + L LV + D LW + + +PYR P I V E D
Sbjct: 936 ENSLFKSLSRYLVRRKDP-ELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKA 994
Query: 456 ---NDLPG-LCKLLETW-LAEVVFPRFRDTSDIRFKLGDYYDDPTVLRYLERLEGNGSSP 510
DLP L +LLE L VF R+ ++ D V+ Y+ RL+ N +P
Sbjct: 995 FMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLD-NYDAP 1053
Query: 511 LAAAAAIVRIGATEATAVLDH--VKSSTIQALQKVFPLGQGDKAVKYVE 557
A AI EA A+ V +S +Q L + +G D+A ++ E
Sbjct: 1054 DIANIAISNELFEEAFAIFRKFDVNTSAVQVL--IEHIGNLDRAYEFAE 1100
>sp|P11442|CLH1_RAT Clathrin heavy chain 1 OS=Rattus norvegicus GN=Cltc PE=1 SV=3
Length = 1675
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 70/169 (41%), Gaps = 21/169 (12%)
Query: 406 EFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADD---------- 455
E +L + L LV + D LW + + +PYR P I V E D
Sbjct: 936 ENSLFKSLSRYLVRRKDP-ELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKA 994
Query: 456 ---NDLPG-LCKLLETW-LAEVVFPRFRDTSDIRFKLGDYYDDPTVLRYLERLEGNGSSP 510
DLP L +LLE L VF R+ ++ D V+ Y+ RL+ N +P
Sbjct: 995 FMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLD-NYDAP 1053
Query: 511 LAAAAAIVRIGATEATAVLDH--VKSSTIQALQKVFPLGQGDKAVKYVE 557
A AI EA A+ V +S +Q L + +G D+A ++ E
Sbjct: 1054 DIANIAISNELFEEAFAIFRKFDVNTSAVQVL--IEHIGNLDRAYEFAE 1100
>sp|Q68FD5|CLH1_MOUSE Clathrin heavy chain 1 OS=Mus musculus GN=Cltc PE=1 SV=3
Length = 1675
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 70/169 (41%), Gaps = 21/169 (12%)
Query: 406 EFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADD---------- 455
E +L + L LV + D LW + + +PYR P I V E D
Sbjct: 936 ENSLFKSLSRYLVRRKDP-ELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKA 994
Query: 456 ---NDLPG-LCKLLETW-LAEVVFPRFRDTSDIRFKLGDYYDDPTVLRYLERLEGNGSSP 510
DLP L +LLE L VF R+ ++ D V+ Y+ RL+ N +P
Sbjct: 995 FMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLD-NYDAP 1053
Query: 511 LAAAAAIVRIGATEATAVLDH--VKSSTIQALQKVFPLGQGDKAVKYVE 557
A AI EA A+ V +S +Q L + +G D+A ++ E
Sbjct: 1054 DIANIAISNELFEEAFAIFRKFDVNTSAVQVL--IEHIGNLDRAYEFAE 1100
>sp|A4VNW7|DER_PSEU5 GTPase Der OS=Pseudomonas stutzeri (strain A1501) GN=der PE=3 SV=1
Length = 499
Score = 35.4 bits (80), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 4/132 (3%)
Query: 342 PNSIPAETFEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLE 401
P IP + E G+ +A++ + VGK L+ + + ++ T RD SIYIP E
Sbjct: 192 PKRIPGPS-EKEGIKIAIIGRPNVGKST-LVNRMLGEERVIVYDQAGTTRD--SIYIPFE 247
Query: 402 KHEMEFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGL 461
+ E ++ L GK+ E + ++ +V FV++ + ++DL L
Sbjct: 248 RDEEKYTLIDTAGVRRRGKIFEAVEKFSVVKTLQAIQDANVVIFVMDAREGVVEHDLNLL 307
Query: 462 CKLLETWLAEVV 473
+LET A V+
Sbjct: 308 GFVLETGRALVI 319
>sp|Q02RV3|DER_PSEAB GTPase Der OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=der
PE=3 SV=1
Length = 493
Score = 34.7 bits (78), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 4/132 (3%)
Query: 342 PNSIPAETFEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLE 401
P IP + E G+ +A++ + VGK L+ + + ++ T RD SIYIP E
Sbjct: 186 PTRIPGPS-EKDGIKIAIIGRPNVGKST-LVNRMLGEERVIVYDQAGTTRD--SIYIPFE 241
Query: 402 KHEMEFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGL 461
++E + L GK+ E + ++ +V FV++ + ++DL L
Sbjct: 242 RNEEMYTLIDTAGVRRRGKIFEAVEKFSVVKTLQAIQDANVVIFVMDAREGVVEHDLNLL 301
Query: 462 CKLLETWLAEVV 473
+LET A V+
Sbjct: 302 GFVLETGRALVI 313
>sp|Q9P7J7|ADA2_SCHPO Transcriptional adapter 2 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=ada2 PE=1 SV=1
Length = 437
Score = 34.7 bits (78), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 354 GVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDL 393
+ AL++ + K+P DA N+FKHL NKV + D
Sbjct: 387 ALKFALISASLTSKKPFQKTDAVNLFKHLDANKVEQVYDF 426
>sp|Q3K7C0|DER_PSEPF GTPase Der OS=Pseudomonas fluorescens (strain Pf0-1) GN=der PE=3
SV=1
Length = 490
Score = 34.3 bits (77), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 82/194 (42%), Gaps = 17/194 (8%)
Query: 351 EAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALE 410
E G+ +A++ + VGK L+ + + ++ T RD SIYIP E+++ ++ L
Sbjct: 192 EKDGIKIAIIGRPNVGKST-LVNRMLGEDRVIVYDQPGTTRD--SIYIPFERNDEKYTLI 248
Query: 411 RGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGLCKLLETWLA 470
GK+ E + ++ +V FV++ + D+DL L LE A
Sbjct: 249 DTAGVRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRA 308
Query: 471 EVV--------FPRFRDTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPLAAA------AA 516
V+ P RD + + ++ D + ++ L G G L A+ +A
Sbjct: 309 LVIAINKWDGMTPSERDFVKVELQRRLFFVDFADIHFISALHGTGVGNLYASVQNSFKSA 368
Query: 517 IVRIGATEATAVLD 530
+ R + T +L+
Sbjct: 369 VTRWPTSRLTQILE 382
>sp|Q886Y6|DER_PSESM GTPase Der OS=Pseudomonas syringae pv. tomato (strain DC3000)
GN=der PE=3 SV=1
Length = 489
Score = 33.5 bits (75), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 81/194 (41%), Gaps = 17/194 (8%)
Query: 351 EAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALE 410
E G+ +A++ + VGK L+ + + ++ T RD SIYIP E++E ++ L
Sbjct: 191 EKDGIKIAIIGRPNVGKST-LVNRMLGEDRVIVYDEPGTTRD--SIYIPFERNEEKYTLI 247
Query: 411 RGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGLCKLLETWLA 470
GK+ E + ++ +V FV++ + D+DL L LE A
Sbjct: 248 DTAGVRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRA 307
Query: 471 EVV--------FPRFRDTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPLAAA------AA 516
V+ P RD I + ++ D + ++ L G G L + +A
Sbjct: 308 LVIALNKWDGMTPGERDFVKIELERRLFFVDFADIHFISALHGTGVGNLYQSVQNSFKSA 367
Query: 517 IVRIGATEATAVLD 530
+ R + T +L+
Sbjct: 368 VTRWPTSRLTQILE 381
>sp|A9N205|DER_SALPB GTPase Der OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
GN=der PE=3 SV=1
Length = 490
Score = 33.1 bits (74), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 92/226 (40%), Gaps = 32/226 (14%)
Query: 389 TLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLE 448
T RD SIYIP+E+ E E+ L GK+ + + + +V V++
Sbjct: 236 TTRD--SIYIPMERDEREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVLLVID 293
Query: 449 NSKEADDNDLPGLCKLLET----------W--LAEVVFPRFRDTSDIRFKLGDYYDDPTV 496
+ D DL L +L + W L++ V + ++T D F+LG + D
Sbjct: 294 AREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVKEQVKETLD--FRLG--FIDFAR 349
Query: 497 LRYLERLEGNGSSPLAAAAAIVRIGATE--ATAVLDHVKSSTIQALQKVFPLGQGDKAVK 554
+ ++ L G+G L + +T +TA+L + + ++ Q PL +G +
Sbjct: 350 VHFISALHGSGVGNLFESVREAYDSSTRRVSTAMLTRIMTMAVEDHQP--PLVRGRRVKL 407
Query: 555 YVEHGETYDPVPVVETEESLTSD---------QNNFAFTTDAYGTS 591
H Y+P P+V + D N F + + GTS
Sbjct: 408 KYAHAGGYNP-PIVVIHGNQVKDLPDSYKRYLMNYFRKSLEVMGTS 452
>sp|A8AD75|DER_CITK8 GTPase Der OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83
/ SGSC4696) GN=der PE=3 SV=1
Length = 490
Score = 33.1 bits (74), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 89/225 (39%), Gaps = 32/225 (14%)
Query: 389 TLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLE 448
T RD SIYIP+E+ E E+ L GK+ + + + +V V++
Sbjct: 236 TTRD--SIYIPMERDEREYVLIDTAGVRKRGKVTDAVEKFSVIKTLQAIEDANVVMLVID 293
Query: 449 NSKEADDNDLP----------GLCKLLETW--LAEVVFPRFRDTSDIRFKLGDYYDDPTV 496
+ D DL L ++ W L + V + ++T D F+LG + D
Sbjct: 294 AREGISDQDLSLLGFILNSGRSLVIVVNKWDGLTQEVKEQVKETLD--FRLG--FIDFAR 349
Query: 497 LRYLERLEGNGSSPLAAAAAIVRIGATE--ATAVLDHVKSSTIQALQKVFPLGQGDKAVK 554
+ ++ L G+G L + +T +TA+L + + ++ Q PL +G +
Sbjct: 350 VHFISALHGSGVGNLFESVREAYDSSTRRVSTAMLTRIMAMAVEDHQP--PLVRGRRVKL 407
Query: 555 YVEHGETYDPVPVVETEESLTSD---------QNNFAFTTDAYGT 590
H Y+P P+V + D N F + D GT
Sbjct: 408 KYAHAGGYNP-PIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMGT 451
>sp|Q80T03|MUC6_MOUSE Mucin-6 OS=Mus musculus GN=Muc6 PE=2 SV=1
Length = 2850
Score = 32.7 bits (73), Expect = 9.1, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 22 PQPRTSSKRPSISKLNTTTVSSASKWAHRLLADFQFTTADNSSLSSSSNTTVTLTPPPPT 81
P RTS+ S+ T+T++ AS+ A L Q+T +S S TT T +PP
Sbjct: 2561 PTTRTSTSHLSLPSSMTSTLTPASRSASTL----QYTPTPSSVSHSPLLTTPTASPPSSA 2616
Query: 82 PT 83
PT
Sbjct: 2617 PT 2618
>sp|Q48LZ0|DER_PSE14 GTPase Der OS=Pseudomonas syringae pv. phaseolicola (strain 1448A /
Race 6) GN=der PE=3 SV=1
Length = 490
Score = 32.7 bits (73), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 81/194 (41%), Gaps = 17/194 (8%)
Query: 351 EAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALE 410
E G+ +A++ + VGK L+ + + ++ T RD SIYIP E++E ++ L
Sbjct: 192 EKDGIKIAIIGRPNVGKST-LVNRMLGEDRVIVYDEPGTTRD--SIYIPFERNEEKYTLI 248
Query: 411 RGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDLPGLCKLLETWLA 470
GK+ E + ++ +V FV++ + D+DL L LE A
Sbjct: 249 DTAGVRKRGKIHEEVEKFSVVKTLQAIKDANVVIFVMDAREGVVDHDLNLLGFALEAGRA 308
Query: 471 EVV--------FPRFRDTSDIRFKLGDYYDDPTVLRYLERLEGNGSSPLAAA------AA 516
V+ P RD I + ++ D + ++ + G G L + +A
Sbjct: 309 LVIALNKWDGMTPGERDFVKIELERRLFFVDFADIHFISAMHGTGVGNLYQSVQNSFKSA 368
Query: 517 IVRIGATEATAVLD 530
+ R + T +L+
Sbjct: 369 VTRWPTSRLTQILE 382
>sp|B5R578|DER_SALEP GTPase Der OS=Salmonella enteritidis PT4 (strain P125109) GN=der
PE=3 SV=1
Length = 490
Score = 32.7 bits (73), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 80/194 (41%), Gaps = 23/194 (11%)
Query: 389 TLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLE 448
T RD SIYIP+E+ E E+ L GK+ + + + +V V++
Sbjct: 236 TTRD--SIYIPMERDEREYVLIDTAGVRKRGKITDAVEKFSVIKTLQAIEDANVVLLVID 293
Query: 449 NSKEADDNDLPGLCKLLET----------W--LAEVVFPRFRDTSDIRFKLGDYYDDPTV 496
+ D DL L +L + W L++ V + ++T D R D+
Sbjct: 294 AREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVKEQVKETLDFRLGFIDF----AR 349
Query: 497 LRYLERLEGNGSSPLAAAAAIVRIGATE--ATAVLDHVKSSTIQALQKVFPLGQGDKAVK 554
+ ++ L G+G L + +T +TA+L + + ++ Q PL +G +
Sbjct: 350 VHFISALHGSGVGNLFESVREAYDSSTRRVSTAMLTRIMTMAVEDHQP--PLVRGRRVKL 407
Query: 555 YVEHGETYDPVPVV 568
H Y+P P+V
Sbjct: 408 KYAHAGGYNP-PIV 420
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 267,656,399
Number of Sequences: 539616
Number of extensions: 11571200
Number of successful extensions: 37589
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 37527
Number of HSP's gapped (non-prelim): 79
length of query: 712
length of database: 191,569,459
effective HSP length: 125
effective length of query: 587
effective length of database: 124,117,459
effective search space: 72856948433
effective search space used: 72856948433
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)