Query 005141
Match_columns 712
No_of_seqs 267 out of 1452
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 18:44:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005141.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005141hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.7 1.8E-18 3.9E-23 186.6 7.1 72 89-160 2-74 (371)
2 KOG0713 Molecular chaperone (D 99.7 5E-17 1.1E-21 172.4 6.0 69 90-158 15-84 (336)
3 PRK14288 chaperone protein Dna 99.6 5.4E-16 1.2E-20 168.3 6.7 68 90-157 2-70 (369)
4 KOG0691 Molecular chaperone (D 99.6 9.2E-16 2E-20 162.0 6.2 95 88-183 2-109 (296)
5 PRK14279 chaperone protein Dna 99.6 3.4E-15 7.4E-20 163.3 6.7 67 90-156 8-75 (392)
6 PRK14296 chaperone protein Dna 99.5 5.5E-15 1.2E-19 160.7 6.3 65 91-156 4-69 (372)
7 PRK14286 chaperone protein Dna 99.5 1E-14 2.2E-19 158.5 6.5 66 91-156 4-70 (372)
8 PRK14285 chaperone protein Dna 99.5 1.5E-14 3.2E-19 157.0 6.9 67 90-156 2-69 (365)
9 PRK14295 chaperone protein Dna 99.5 1.4E-14 3.1E-19 158.3 6.8 68 88-155 6-74 (389)
10 PRK14277 chaperone protein Dna 99.5 1.8E-14 3.9E-19 157.2 7.2 69 89-157 3-72 (386)
11 PRK14298 chaperone protein Dna 99.5 1.8E-14 3.8E-19 157.0 6.8 70 87-157 1-71 (377)
12 KOG0712 Molecular chaperone (D 99.5 1.8E-14 3.9E-19 154.1 6.3 67 90-159 3-70 (337)
13 PRK14278 chaperone protein Dna 99.5 2.4E-14 5.2E-19 156.0 6.8 66 90-156 2-68 (378)
14 PRK14282 chaperone protein Dna 99.5 2.7E-14 5.9E-19 155.0 7.0 68 90-157 3-72 (369)
15 PRK14284 chaperone protein Dna 99.5 3.1E-14 6.7E-19 155.7 6.7 67 91-157 1-68 (391)
16 PRK14287 chaperone protein Dna 99.5 4.3E-14 9.3E-19 153.7 7.0 66 91-157 4-70 (371)
17 PTZ00037 DnaJ_C chaperone prot 99.5 3.1E-14 6.8E-19 157.2 5.9 64 90-157 27-91 (421)
18 PRK14294 chaperone protein Dna 99.5 4.8E-14 1E-18 153.0 7.1 68 90-157 3-71 (366)
19 PRK14291 chaperone protein Dna 99.5 4.2E-14 9E-19 154.3 6.6 67 90-157 2-69 (382)
20 PRK14281 chaperone protein Dna 99.5 4.8E-14 1E-18 154.5 6.6 68 90-157 2-70 (397)
21 PRK14299 chaperone protein Dna 99.5 5E-14 1.1E-18 148.5 6.4 67 90-157 3-70 (291)
22 PRK14297 chaperone protein Dna 99.5 4.6E-14 1E-18 153.7 6.2 67 91-157 4-71 (380)
23 PRK14301 chaperone protein Dna 99.5 5.3E-14 1.2E-18 153.0 6.5 68 90-157 3-71 (373)
24 PF00226 DnaJ: DnaJ domain; I 99.5 5.1E-14 1.1E-18 115.6 4.8 62 92-153 1-64 (64)
25 PRK14283 chaperone protein Dna 99.5 7.5E-14 1.6E-18 152.0 6.8 67 90-157 4-71 (378)
26 PRK14276 chaperone protein Dna 99.4 7.4E-14 1.6E-18 152.2 6.2 66 91-157 4-70 (380)
27 PRK14290 chaperone protein Dna 99.4 8.9E-14 1.9E-18 150.8 6.5 68 90-157 2-71 (365)
28 PRK10767 chaperone protein Dna 99.4 1.1E-13 2.4E-18 150.3 6.9 68 90-157 3-71 (371)
29 KOG0715 Molecular chaperone (D 99.4 1.4E-13 3.1E-18 145.3 6.4 67 92-159 44-111 (288)
30 PRK14280 chaperone protein Dna 99.4 1.6E-13 3.6E-18 149.3 6.5 66 91-157 4-70 (376)
31 PRK14292 chaperone protein Dna 99.4 1.8E-13 4E-18 148.5 6.6 67 90-157 1-68 (371)
32 KOG0716 Molecular chaperone (D 99.4 3.3E-13 7.1E-18 140.0 7.1 66 90-155 30-96 (279)
33 KOG0718 Molecular chaperone (D 99.4 2.8E-13 6.1E-18 148.3 6.6 70 91-160 9-82 (546)
34 PRK14293 chaperone protein Dna 99.4 2.9E-13 6.4E-18 147.2 6.4 67 90-157 2-69 (374)
35 TIGR02349 DnaJ_bact chaperone 99.4 3E-13 6.6E-18 145.8 6.1 65 92-157 1-66 (354)
36 PRK14300 chaperone protein Dna 99.4 2.8E-13 6E-18 147.4 5.8 66 90-156 2-68 (372)
37 PTZ00341 Ring-infected erythro 99.4 4.4E-13 9.6E-18 157.0 7.8 70 89-159 571-641 (1136)
38 PRK14289 chaperone protein Dna 99.4 4.2E-13 9E-18 146.5 6.9 68 90-157 4-72 (386)
39 KOG0717 Molecular chaperone (D 99.4 3.6E-13 7.7E-18 147.4 5.9 66 91-156 8-75 (508)
40 PRK10266 curved DNA-binding pr 99.4 6.4E-13 1.4E-17 141.0 6.0 65 91-156 4-69 (306)
41 smart00271 DnaJ DnaJ molecular 99.3 3.3E-12 7.2E-17 103.1 6.2 58 91-148 1-60 (60)
42 COG2214 CbpA DnaJ-class molecu 99.3 4.9E-12 1.1E-16 121.7 6.1 68 88-155 3-72 (237)
43 cd06257 DnaJ DnaJ domain or J- 99.3 8.8E-12 1.9E-16 98.8 5.9 54 92-145 1-55 (55)
44 TIGR03835 termin_org_DnaJ term 99.2 3.5E-11 7.5E-16 138.9 7.6 68 91-159 2-70 (871)
45 PRK05014 hscB co-chaperone Hsc 99.1 6.6E-10 1.4E-14 109.6 14.4 67 91-157 1-75 (171)
46 PRK03578 hscB co-chaperone Hsc 99.1 7.7E-10 1.7E-14 109.7 14.6 68 90-157 5-80 (176)
47 KOG0719 Molecular chaperone (D 99.1 3.7E-11 8.1E-16 122.7 5.4 68 91-158 14-84 (264)
48 PHA03102 Small T antigen; Revi 99.1 5.1E-11 1.1E-15 115.8 4.1 66 92-161 6-74 (153)
49 PRK00294 hscB co-chaperone Hsc 99.1 1.9E-09 4.2E-14 106.7 13.8 67 91-157 4-78 (173)
50 KOG0721 Molecular chaperone (D 99.1 1.6E-10 3.4E-15 117.1 5.5 73 89-161 97-170 (230)
51 KOG0720 Molecular chaperone (D 99.0 2E-10 4.3E-15 126.3 5.8 70 90-160 234-304 (490)
52 KOG0624 dsRNA-activated protei 99.0 3.9E-10 8.3E-15 121.0 4.8 71 87-157 390-464 (504)
53 PRK01356 hscB co-chaperone Hsc 99.0 9.8E-10 2.1E-14 108.0 6.8 67 91-157 2-74 (166)
54 KOG0722 Molecular chaperone (D 98.9 9.2E-10 2E-14 113.8 4.8 124 91-251 33-157 (329)
55 KOG0714 Molecular chaperone (D 98.9 9E-10 2E-14 111.4 4.0 68 90-157 2-71 (306)
56 KOG0550 Molecular chaperone (D 98.8 2.9E-09 6.3E-14 116.4 4.1 72 86-157 368-441 (486)
57 PTZ00100 DnaJ chaperone protei 98.7 2.2E-08 4.7E-13 93.5 4.7 56 84-144 59-115 (116)
58 PRK09430 djlA Dna-J like membr 98.7 2.1E-08 4.5E-13 105.3 5.1 55 91-145 200-262 (267)
59 PHA02624 large T antigen; Prov 98.5 6.2E-08 1.3E-12 111.2 4.9 59 91-153 11-72 (647)
60 PRK01773 hscB co-chaperone Hsc 98.4 3.4E-06 7.3E-11 83.9 13.3 67 91-157 2-76 (173)
61 COG5407 SEC63 Preprotein trans 98.3 1E-06 2.2E-11 97.4 5.9 71 90-160 97-173 (610)
62 TIGR00714 hscB Fe-S protein as 98.2 2.6E-05 5.6E-10 76.3 13.2 55 103-157 3-63 (157)
63 COG5269 ZUO1 Ribosome-associat 97.7 2.7E-05 5.9E-10 81.8 4.3 70 91-160 43-118 (379)
64 KOG1150 Predicted molecular ch 97.7 4.9E-05 1.1E-09 77.1 5.9 62 90-151 52-115 (250)
65 KOG0568 Molecular chaperone (D 97.6 4.8E-05 1.1E-09 78.5 3.3 53 92-145 48-102 (342)
66 KOG0723 Molecular chaperone (D 96.9 0.0017 3.6E-08 60.3 5.4 49 94-146 59-108 (112)
67 KOG1789 Endocytosis protein RM 94.4 0.043 9.2E-07 66.8 4.7 50 92-144 1282-1336(2235)
68 COG1076 DjlA DnaJ-domain-conta 90.2 0.18 3.8E-06 50.2 2.2 53 91-143 113-173 (174)
69 KOG3192 Mitochondrial J-type c 89.4 0.53 1.1E-05 46.9 4.7 72 86-158 3-83 (168)
70 KOG0431 Auxilin-like protein a 85.6 1.1 2.4E-05 51.3 5.1 47 98-144 395-449 (453)
71 PF13446 RPT: A repeated domai 82.3 2.1 4.5E-05 35.6 4.2 30 92-121 6-35 (62)
72 COG1076 DjlA DnaJ-domain-conta 70.0 7.6 0.00016 38.7 5.0 69 92-160 2-78 (174)
73 PF14559 TPR_19: Tetratricopep 65.6 13 0.00028 29.9 4.7 44 372-430 7-50 (68)
74 PF03656 Pam16: Pam16; InterP 64.1 10 0.00022 36.7 4.4 48 93-144 60-108 (127)
75 PF13424 TPR_12: Tetratricopep 62.8 28 0.00062 28.8 6.4 63 179-248 14-78 (78)
76 PF13432 TPR_16: Tetratricopep 54.8 32 0.00069 27.5 5.3 43 372-429 13-55 (65)
77 PF11833 DUF3353: Protein of u 52.4 17 0.00038 37.3 4.1 43 100-149 1-43 (194)
78 PF13174 TPR_6: Tetratricopept 49.4 25 0.00053 24.2 3.3 24 406-429 1-24 (33)
79 PRK10803 tol-pal system protei 43.6 2.6E+02 0.0056 29.9 11.4 52 182-242 192-243 (263)
80 PRK11447 cellulose synthase su 40.7 4.6E+02 0.0099 33.6 14.7 45 370-429 283-327 (1157)
81 PF13414 TPR_11: TPR repeat; P 36.8 1.5E+02 0.0032 23.8 6.6 56 179-245 12-67 (69)
82 TIGR02267 Myxococcus xanthus p 34.3 13 0.00028 35.6 -0.0 29 454-482 88-116 (123)
83 PF09543 DUF2379: Protein of u 28.1 20 0.00044 34.4 0.1 29 454-482 86-114 (121)
84 KOG3081 Vesicle coat complex C 27.6 1.4E+02 0.0029 32.9 6.1 44 372-430 189-232 (299)
85 PRK11447 cellulose synthase su 27.6 1.4E+03 0.031 29.3 18.9 25 219-245 466-490 (1157)
86 PF13525 YfiO: Outer membrane 27.5 6.4E+02 0.014 25.3 11.0 75 181-256 53-127 (203)
87 KOG4162 Predicted calmodulin-b 26.4 1.3E+03 0.029 28.9 14.4 125 175-306 399-545 (799)
88 PF04190 DUF410: Protein of un 26.3 2.2E+02 0.0048 30.3 7.4 39 230-268 4-42 (260)
89 PF12688 TPR_5: Tetratrico pep 26.0 2.3E+02 0.0049 26.9 6.7 57 178-243 9-65 (120)
90 PF13432 TPR_16: Tetratricopep 25.8 3.4E+02 0.0073 21.5 6.9 55 179-245 6-60 (65)
91 PF13371 TPR_9: Tetratricopept 24.7 1.4E+02 0.003 24.2 4.5 25 405-429 29-53 (73)
92 PF07721 TPR_4: Tetratricopept 24.4 94 0.002 21.4 2.9 22 408-429 4-25 (26)
93 PF07719 TPR_2: Tetratricopept 24.3 1.5E+02 0.0033 20.3 4.0 29 215-245 2-30 (34)
94 PRK15359 type III secretion sy 24.1 1.2E+02 0.0025 28.9 4.5 47 368-429 36-82 (144)
95 TIGR02917 PEP_TPR_lipo putativ 24.0 1.2E+03 0.025 27.1 16.1 23 406-428 262-284 (899)
96 PRK10049 pgaA outer membrane p 23.9 1.4E+03 0.03 28.0 18.2 43 372-429 409-451 (765)
97 PLN03088 SGT1, suppressor of 23.3 2.2E+02 0.0047 31.5 6.9 56 352-429 39-94 (356)
98 KOG1586 Protein required for f 23.1 30 0.00065 37.3 0.3 83 412-502 161-255 (288)
99 PF13525 YfiO: Outer membrane 22.1 1.6E+02 0.0035 29.6 5.2 69 350-451 6-74 (203)
100 TIGR02552 LcrH_SycD type III s 21.9 3.9E+02 0.0084 24.0 7.3 43 372-429 67-109 (135)
101 KOG0724 Zuotin and related mol 21.9 86 0.0019 34.1 3.5 55 102-156 3-62 (335)
102 TIGR02552 LcrH_SycD type III s 21.4 4.8E+02 0.01 23.4 7.8 75 179-268 60-134 (135)
103 KOG1125 TPR repeat-containing 20.7 4.3E+02 0.0093 31.8 8.8 160 232-430 282-455 (579)
104 PF12895 Apc3: Anaphase-promot 20.4 1.3E+02 0.0029 25.4 3.7 55 352-429 28-82 (84)
105 PRK15359 type III secretion sy 20.3 1.6E+02 0.0036 27.9 4.6 45 370-429 72-116 (144)
106 PF06287 DUF1039: Protein of u 20.2 2.4E+02 0.0053 24.7 5.1 45 370-429 7-51 (66)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.8e-18 Score=186.64 Aligned_cols=72 Identities=21% Similarity=0.292 Sum_probs=66.1
Q ss_pred cCCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhcccCCC
Q 005141 89 IPIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADDH 160 (712)
Q Consensus 89 iPlDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~~~~ 160 (712)
+..|||+||||+++||.+|||||||+++++ |||++..++++++||+.|+|||||||||++|+.||++.....
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~ 74 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGF 74 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCcccc
Confidence 457999999999999999999999999998 799998777889999999999999999999999999876543
No 2
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=5e-17 Score=172.36 Aligned_cols=69 Identities=23% Similarity=0.328 Sum_probs=65.3
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhcccC
Q 005141 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLAD 158 (712)
Q Consensus 90 PlDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~~ 158 (712)
..|||+||||+++|+..|||+|||||+++ |||+|.+++.+...|+.|+.||+|||||++|+.||.+.-+
T Consensus 15 ~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEe 84 (336)
T KOG0713|consen 15 GRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEE 84 (336)
T ss_pred CCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHh
Confidence 36999999999999999999999999998 8999999999999999999999999999999999998643
No 3
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.61 E-value=5.4e-16 Score=168.28 Aligned_cols=68 Identities=18% Similarity=0.300 Sum_probs=62.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005141 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (712)
Q Consensus 90 PlDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~ 157 (712)
..|||+||||+++||.+|||||||+++++ |||++..+..++++|+.|++||+|||||++|+.||++..
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~ 70 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGK 70 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcc
Confidence 57999999999999999999999999988 799986555678899999999999999999999998753
No 4
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=9.2e-16 Score=162.02 Aligned_cols=95 Identities=23% Similarity=0.320 Sum_probs=83.3
Q ss_pred ccCCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhcccCCCCCCccc
Q 005141 88 SIPIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADDHADTILT 166 (712)
Q Consensus 88 ~iPlDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~~~~~~~~~l 166 (712)
..-+|||+||||+.+|+..||++|||+++++ |||++++++.+.++|+.|.+||+||+|+++|+.||..++.+..+. +.
T Consensus 2 ~~~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~-~~ 80 (296)
T KOG0691|consen 2 VKDTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ-GR 80 (296)
T ss_pred cccchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch-hh
Confidence 3467999999999999999999999999977 899999988899999999999999999999999999998877654 33
Q ss_pred cC------------CCccccchHHHHHHh
Q 005141 167 EV------------PWDKVPGALLVLQEA 183 (712)
Q Consensus 167 ei------------~~~~~~GaL~LLqEl 183 (712)
.+ ...+++|++.+++|+
T Consensus 81 ~d~~~~~r~~f~~dl~~~~~~~~a~~~~~ 109 (296)
T KOG0691|consen 81 EDQADGFRKKFGSDLFERERGALALLKES 109 (296)
T ss_pred hhHHHHHHHHhhhhhhhhHHHHHhHHhhh
Confidence 33 347788888888887
No 5
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=3.4e-15 Score=163.29 Aligned_cols=67 Identities=24% Similarity=0.412 Sum_probs=62.1
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhcc
Q 005141 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGL 156 (712)
Q Consensus 90 PlDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L 156 (712)
..|||+||||+++|+.+|||+|||+++++ |||++..++.++++|+.|++||+|||||++|+.||++.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G 75 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETR 75 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhh
Confidence 46999999999999999999999999988 89998766677889999999999999999999999874
No 6
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=5.5e-15 Score=160.67 Aligned_cols=65 Identities=23% Similarity=0.350 Sum_probs=60.0
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhcc
Q 005141 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGL 156 (712)
Q Consensus 91 lDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L 156 (712)
.|||+||||+++|+.+|||+|||+++++ |||++.+ ..++++|+.|++||+|||||++|+.||++.
T Consensus 4 ~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~-~~a~~~F~~i~~AyevLsD~~KR~~YD~~G 69 (372)
T PRK14296 4 KDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS-PDAHDKMVEINEAADVLLDKDKRKQYDQFG 69 (372)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-chHHHHHHHHHHHHHHhcCHHHhhhhhhcc
Confidence 6999999999999999999999999988 8999864 457789999999999999999999999864
No 7
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.52 E-value=1e-14 Score=158.53 Aligned_cols=66 Identities=21% Similarity=0.249 Sum_probs=61.4
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhcc
Q 005141 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGL 156 (712)
Q Consensus 91 lDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L 156 (712)
.|||+||||+++|+.+|||+|||+++++ |||++..+..++++|+.|++||+|||||++|+.||++.
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G 70 (372)
T PRK14286 4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFG 70 (372)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhC
Confidence 5999999999999999999999999988 79998766667889999999999999999999999864
No 8
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=1.5e-14 Score=157.00 Aligned_cols=67 Identities=24% Similarity=0.260 Sum_probs=62.2
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhcc
Q 005141 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGL 156 (712)
Q Consensus 90 PlDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L 156 (712)
..|||+||||+++||.+|||+|||+++++ |||++...+.+.++|+.|++||+||+||.+|+.||.+.
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g 69 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFG 69 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcC
Confidence 46999999999999999999999999988 79998766677889999999999999999999999864
No 9
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=1.4e-14 Score=158.30 Aligned_cols=68 Identities=22% Similarity=0.382 Sum_probs=62.6
Q ss_pred ccCCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhc
Q 005141 88 SIPIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQG 155 (712)
Q Consensus 88 ~iPlDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~ 155 (712)
.|..|||+||||+++|+.+|||+|||+++++ |||++..+..++++|+.|++||+||+||.+|+.||+.
T Consensus 6 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~ 74 (389)
T PRK14295 6 YIEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEA 74 (389)
T ss_pred ccccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHH
Confidence 3568999999999999999999999999988 7999876667889999999999999999999999983
No 10
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=1.8e-14 Score=157.24 Aligned_cols=69 Identities=22% Similarity=0.339 Sum_probs=63.1
Q ss_pred cCCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005141 89 IPIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (712)
Q Consensus 89 iPlDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~ 157 (712)
...|||+||||+++|+.+|||+|||+++++ |||++.+...++++|+.|++||+|||||.+|+.||.+..
T Consensus 3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~ 72 (386)
T PRK14277 3 AKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGH 72 (386)
T ss_pred CCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcc
Confidence 357999999999999999999999999988 799987666778899999999999999999999998753
No 11
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.50 E-value=1.8e-14 Score=157.00 Aligned_cols=70 Identities=20% Similarity=0.287 Sum_probs=63.0
Q ss_pred cccCCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005141 87 VSIPIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (712)
Q Consensus 87 m~iPlDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~ 157 (712)
|+.+.|||+||||+++|+.+|||+|||+++++ |||++.+ ..++++|+.|++||+||+||.+|+.||++..
T Consensus 1 ~~~~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 71 (377)
T PRK14298 1 MATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE-PDAEEKFKEISEAYAVLSDAEKRAQYDRFGH 71 (377)
T ss_pred CCCCCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC-hhHHHHHHHHHHHHHHhcchHhhhhhhhcCc
Confidence 55667999999999999999999999999988 7999764 4567899999999999999999999999753
No 12
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.8e-14 Score=154.13 Aligned_cols=67 Identities=21% Similarity=0.278 Sum_probs=61.5
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhcccCC
Q 005141 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADD 159 (712)
Q Consensus 90 PlDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~~~ 159 (712)
...||+||||+++||.+|||||||+++++ |||++++ +.++|+.|.+||+|||||++|+.||++..++
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g~~~ 70 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYGEEG 70 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhh
Confidence 46899999999999999999999999988 7999887 5689999999999999999999999987553
No 13
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.49 E-value=2.4e-14 Score=156.00 Aligned_cols=66 Identities=23% Similarity=0.334 Sum_probs=60.5
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhcc
Q 005141 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGL 156 (712)
Q Consensus 90 PlDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L 156 (712)
..|||+||||+++|+.+|||+|||+++++ |||++.+ +.++++|+.|++||+||+||++|+.||++.
T Consensus 2 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~-~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G 68 (378)
T PRK14278 2 ARDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD-EEAQEKFKEISVAYEVLSDPEKRRIVDLGG 68 (378)
T ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc-HHHHHHHHHHHHHHHHhchhhhhhhhhccC
Confidence 46999999999999999999999999988 7999864 456789999999999999999999999864
No 14
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.49 E-value=2.7e-14 Score=155.00 Aligned_cols=68 Identities=22% Similarity=0.320 Sum_probs=61.5
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCCh-HHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005141 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSP-DALISRRQILQAACETLANASSRREYNQGLA 157 (712)
Q Consensus 90 PlDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~-~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~ 157 (712)
..|||+||||+++|+.+|||+|||+++++ |||++... ..++++|+.|++||+|||||++|+.||++..
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~ 72 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGY 72 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCc
Confidence 36999999999999999999999999988 79997643 5578899999999999999999999998754
No 15
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.48 E-value=3.1e-14 Score=155.69 Aligned_cols=67 Identities=24% Similarity=0.340 Sum_probs=62.3
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005141 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (712)
Q Consensus 91 lDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~ 157 (712)
.|||+||||+++|+.+|||+|||+++++ |||++.+...++++|+.|++||+||+||++|+.||++..
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 68 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGK 68 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccc
Confidence 4899999999999999999999999988 899988777788999999999999999999999998753
No 16
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=4.3e-14 Score=153.66 Aligned_cols=66 Identities=21% Similarity=0.344 Sum_probs=60.3
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005141 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (712)
Q Consensus 91 lDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~ 157 (712)
.|||+||||+++|+.+|||+|||+++++ |||++.+ +.++++|+.|++||+||+||++|+.||++..
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~ 70 (371)
T PRK14287 4 RDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA-PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGH 70 (371)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCC
Confidence 6999999999999999999999999988 8999764 4567899999999999999999999999753
No 17
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.47 E-value=3.1e-14 Score=157.16 Aligned_cols=64 Identities=20% Similarity=0.282 Sum_probs=58.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005141 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (712)
Q Consensus 90 PlDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~ 157 (712)
..|||+||||+++||.+|||||||+++++ |||++.+ .++|+.|++||+|||||++|+.||.+..
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~~kR~~YD~~G~ 91 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEYGE 91 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccHHHHHHHhhhcc
Confidence 46999999999999999999999999988 7999743 3789999999999999999999998754
No 18
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=4.8e-14 Score=152.95 Aligned_cols=68 Identities=21% Similarity=0.240 Sum_probs=62.7
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005141 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (712)
Q Consensus 90 PlDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~ 157 (712)
..|||+||||+++|+.+|||+|||+++++ |||++.+++.++++|+.|++||+||+||.+|+.||++..
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~ 71 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGH 71 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhcc
Confidence 36999999999999999999999999988 799987666778899999999999999999999998754
No 19
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=4.2e-14 Score=154.25 Aligned_cols=67 Identities=21% Similarity=0.353 Sum_probs=60.9
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005141 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (712)
Q Consensus 90 PlDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~ 157 (712)
..|||+||||+++|+.+|||+|||+++++ |||++.+ ..++++|+.|++||+|||||.+|+.||.+..
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~ 69 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEKRKLYDQFGH 69 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhcCHHHHHHHhhhcc
Confidence 46999999999999999999999999988 7999765 4567899999999999999999999998754
No 20
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=4.8e-14 Score=154.52 Aligned_cols=68 Identities=26% Similarity=0.320 Sum_probs=62.5
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005141 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (712)
Q Consensus 90 PlDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~ 157 (712)
..|||+||||+++|+.+|||+|||+++++ |||++.+...++++|+.|++||+||+||.+|+.||.+..
T Consensus 2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~ 70 (397)
T PRK14281 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGH 70 (397)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence 46999999999999999999999999988 799987666678899999999999999999999998753
No 21
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=5e-14 Score=148.51 Aligned_cols=67 Identities=22% Similarity=0.306 Sum_probs=60.7
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005141 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (712)
Q Consensus 90 PlDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~ 157 (712)
..|||+||||+++||.+|||+|||+++++ |||++.+ ..++++|+.|++||+|||||++|+.||++..
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~ 70 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS-PGAEEKFKEINEAYTVLSDPEKRRIYDTYGT 70 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhcCHHHHHHHHhcCC
Confidence 36999999999999999999999999988 7999764 4567899999999999999999999998743
No 22
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=4.6e-14 Score=153.72 Aligned_cols=67 Identities=21% Similarity=0.317 Sum_probs=62.2
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005141 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (712)
Q Consensus 91 lDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~ 157 (712)
.|||+||||+++|+.+|||+|||+++++ |||++...+.++++|+.|++||+||+||.+|+.||++..
T Consensus 4 ~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~ 71 (380)
T PRK14297 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGT 71 (380)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCc
Confidence 5999999999999999999999999988 799987666788999999999999999999999998753
No 23
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=5.3e-14 Score=153.04 Aligned_cols=68 Identities=22% Similarity=0.278 Sum_probs=62.6
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005141 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (712)
Q Consensus 90 PlDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~ 157 (712)
..|||+||||+++|+.+|||+|||+++++ |||++.+...++++|+.|++||+||+||.+|+.||.+..
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~ 71 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGH 71 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccc
Confidence 36999999999999999999999999988 799987666778899999999999999999999998754
No 24
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.46 E-value=5.1e-14 Score=115.65 Aligned_cols=62 Identities=21% Similarity=0.353 Sum_probs=56.9
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChH-HHHHHHHHHHHHHHHcCCchhhHHHh
Q 005141 92 DFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPD-ALISRRQILQAACETLANASSRREYN 153 (712)
Q Consensus 92 DyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~-a~~~RfqlI~eAYeVLSDp~~R~~YD 153 (712)
|||+||||+++++.++||++|++++++ |||+..... .++.+|+.|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 689999999999999999999999987 799965544 67889999999999999999999998
No 25
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.45 E-value=7.5e-14 Score=151.99 Aligned_cols=67 Identities=21% Similarity=0.323 Sum_probs=61.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005141 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (712)
Q Consensus 90 PlDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~ 157 (712)
..|||+||||+++|+.+|||+|||+++++ |||++.+ ..++++|+.|++||+|||||.+|+.||++..
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~ 71 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSDDEKRQRYDQFGH 71 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhchhHHHHHHhhhcc
Confidence 56999999999999999999999999988 8999765 5578899999999999999999999999753
No 26
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.44 E-value=7.4e-14 Score=152.21 Aligned_cols=66 Identities=27% Similarity=0.381 Sum_probs=60.2
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005141 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (712)
Q Consensus 91 lDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~ 157 (712)
.|||+||||+++||.+|||+|||+++++ |||++.+ ..++++|+.|++||+||+||++|+.||++..
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 70 (380)
T PRK14276 4 TEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE-PGAEEKYKEVQEAYETLSDPQKRAAYDQYGA 70 (380)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCC
Confidence 5999999999999999999999999988 7999865 4567899999999999999999999998753
No 27
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.44 E-value=8.9e-14 Score=150.81 Aligned_cols=68 Identities=22% Similarity=0.380 Sum_probs=61.5
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCCh-HHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005141 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSP-DALISRRQILQAACETLANASSRREYNQGLA 157 (712)
Q Consensus 90 PlDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~-~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~ 157 (712)
+.|||+||||+++|+.+|||+|||+++++ |||++... +.++++|+.|++||+||+||.+|+.||.+..
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~ 71 (365)
T PRK14290 2 AKDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGT 71 (365)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCC
Confidence 47999999999999999999999999988 89997654 3678899999999999999999999998643
No 28
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.44 E-value=1.1e-13 Score=150.26 Aligned_cols=68 Identities=24% Similarity=0.333 Sum_probs=62.2
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005141 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (712)
Q Consensus 90 PlDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~ 157 (712)
..|||+||||+++|+.+|||+|||+++++ |||++.....++++|+.|++||++|+||.+|+.||.+..
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~ 71 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGH 71 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccc
Confidence 46999999999999999999999999988 899987656678899999999999999999999998754
No 29
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.4e-13 Score=145.28 Aligned_cols=67 Identities=21% Similarity=0.318 Sum_probs=62.8
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhcccCC
Q 005141 92 DFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADD 159 (712)
Q Consensus 92 DyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~~~ 159 (712)
|||+||||+++|+..|||+||++|+++ |||.+.+. .+.++|+.|.+|||+|+|+++|++||..+...
T Consensus 44 d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~-~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 44 DYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK-EASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred chhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc-chhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 899999999999999999999999998 79988766 67889999999999999999999999998765
No 30
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.42 E-value=1.6e-13 Score=149.33 Aligned_cols=66 Identities=24% Similarity=0.353 Sum_probs=60.2
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005141 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (712)
Q Consensus 91 lDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~ 157 (712)
.|||+||||+++|+.+|||+|||+++++ |||++.+ ..++++|+.|++||+|||||.+|+.||++..
T Consensus 4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~ 70 (376)
T PRK14280 4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE-EGADEKFKEISEAYEVLSDDQKRAQYDQFGH 70 (376)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhccHhHHHHHHhcCc
Confidence 5999999999999999999999999988 7999764 3467899999999999999999999999753
No 31
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.41 E-value=1.8e-13 Score=148.49 Aligned_cols=67 Identities=22% Similarity=0.326 Sum_probs=61.1
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005141 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (712)
Q Consensus 90 PlDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~ 157 (712)
+.|||+||||+++|+.+|||+|||+++++ |||++.+ ..++++|+.|++||+||+||.+|+.||.+..
T Consensus 1 ~~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~-~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~ 68 (371)
T PRK14292 1 MMDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE-KGAAEKFAQINEAYAVLSDAEKRAHYDRFGT 68 (371)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-hhHHHHHHHHHHHHHHhcchhhhhhHhhcCC
Confidence 46999999999999999999999999988 8999864 4567899999999999999999999999754
No 32
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=3.3e-13 Score=139.99 Aligned_cols=66 Identities=21% Similarity=0.329 Sum_probs=62.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhc
Q 005141 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQG 155 (712)
Q Consensus 90 PlDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~ 155 (712)
..|+|+|||++++|+.++||||||+++++ |||++.+++++..+|++|++||++||||.+|..||..
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~ 96 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEY 96 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHh
Confidence 57999999999999999999999999986 8999888777889999999999999999999999987
No 33
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=2.8e-13 Score=148.28 Aligned_cols=70 Identities=24% Similarity=0.306 Sum_probs=62.9
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChH---HHHHHHHHHHHHHHHcCCchhhHHHhhcccCCC
Q 005141 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPD---ALISRRQILQAACETLANASSRREYNQGLADDH 160 (712)
Q Consensus 91 lDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~---a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~~~~ 160 (712)
.|||.+|||+++||+||||+|||++++- |||+.-+++ +++..|++|++||||||||++|..||.+..++-
T Consensus 9 ~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL 82 (546)
T KOG0718|consen 9 IELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGL 82 (546)
T ss_pred hhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhccc
Confidence 4899999999999999999999999876 899976543 578889999999999999999999999877653
No 34
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.39 E-value=2.9e-13 Score=147.23 Aligned_cols=67 Identities=25% Similarity=0.357 Sum_probs=60.8
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005141 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (712)
Q Consensus 90 PlDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~ 157 (712)
+.|||+||||+++|+.+|||+|||+++++ |||++.+ ..++++|+.|++||+||+||.+|+.||.+..
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~ 69 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE-PGAEDRFKEINRAYEVLSDPETRARYDQFGE 69 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-cCHHHHHHHHHHHHHHHhchHHHHHHhhccc
Confidence 67999999999999999999999999988 8998754 4467899999999999999999999998653
No 35
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.39 E-value=3e-13 Score=145.79 Aligned_cols=65 Identities=23% Similarity=0.353 Sum_probs=59.3
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005141 92 DFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (712)
Q Consensus 92 DyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~ 157 (712)
|||+||||+++|+.+|||+|||+++++ |||++. ...++++|+.|++||+||+||.+|+.||.+..
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~ 66 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGH 66 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhhChHHHHhhhhccc
Confidence 799999999999999999999999988 799976 34467899999999999999999999998754
No 36
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.39 E-value=2.8e-13 Score=147.36 Aligned_cols=66 Identities=20% Similarity=0.280 Sum_probs=59.8
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhcc
Q 005141 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGL 156 (712)
Q Consensus 90 PlDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L 156 (712)
..|||+||||+++||.+|||+|||+++++ |||++.+ ..++++|+.|++||++|+|+.+|+.||++.
T Consensus 2 ~~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G 68 (372)
T PRK14300 2 SQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA-KDAEKKFKEINAAYDVLKDEQKRAAYDRFG 68 (372)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhhhHhHhhHHHhcc
Confidence 36999999999999999999999999988 7998753 446789999999999999999999999864
No 37
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.39 E-value=4.4e-13 Score=157.02 Aligned_cols=70 Identities=17% Similarity=0.139 Sum_probs=63.4
Q ss_pred cCCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhcccCC
Q 005141 89 IPIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADD 159 (712)
Q Consensus 89 iPlDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~~~ 159 (712)
...+||+||||+++|+..+||+|||+++++ |||++.++ .+..+|+.|.+||+|||||.+|+.||.+...+
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~G 641 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDIDKKKMYNKFGYDG 641 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHhCCHHHHHHHhhccccc
Confidence 357999999999999999999999999988 89998765 46679999999999999999999999987664
No 38
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.38 E-value=4.2e-13 Score=146.54 Aligned_cols=68 Identities=21% Similarity=0.299 Sum_probs=62.5
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005141 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLA 157 (712)
Q Consensus 90 PlDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~ 157 (712)
..|||+||||+++|+.+|||+|||+++++ |||++...+.++++|+.|++||++|+||.+|+.||++..
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~ 72 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGH 72 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcc
Confidence 46999999999999999999999999987 899987666688899999999999999999999998753
No 39
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=3.6e-13 Score=147.42 Aligned_cols=66 Identities=24% Similarity=0.337 Sum_probs=60.9
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCC-ChHHHHHHHHHHHHHHHHcCCchhhHHHhhcc
Q 005141 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGF-SPDALISRRQILQAACETLANASSRREYNQGL 156 (712)
Q Consensus 91 lDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~-s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L 156 (712)
..||+||||.++|++++||++||+++++ |||+++ .-+.+.++|++|+.||+|||||+.|..||.+.
T Consensus 8 ~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hr 75 (508)
T KOG0717|consen 8 RCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHR 75 (508)
T ss_pred hHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHH
Confidence 4899999999999999999999999998 899965 46678899999999999999999999999864
No 40
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.35 E-value=6.4e-13 Score=140.98 Aligned_cols=65 Identities=25% Similarity=0.295 Sum_probs=59.5
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhcc
Q 005141 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGL 156 (712)
Q Consensus 91 lDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L 156 (712)
.|||+||||+++|+.+|||+|||+++++ |||++.+ ..++++|+.|++||++|+||.+|+.||.+.
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~-~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g 69 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE-PDAEARFKEVAEAWEVLSDEQRRAEYDQLW 69 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 5999999999999999999999999988 7999654 457889999999999999999999999864
No 41
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.31 E-value=3.3e-12 Score=103.13 Aligned_cols=58 Identities=22% Similarity=0.329 Sum_probs=52.3
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCC-hHHHHHHHHHHHHHHHHcCCchh
Q 005141 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFS-PDALISRRQILQAACETLANASS 148 (712)
Q Consensus 91 lDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s-~~a~~~RfqlI~eAYeVLSDp~~ 148 (712)
.|||+||||+++++.++||++|++++++ |||++.. .+....+|+.|++||++|+||.+
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 3899999999999999999999999988 7999765 56678899999999999999853
No 42
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=4.9e-12 Score=121.69 Aligned_cols=68 Identities=24% Similarity=0.324 Sum_probs=62.2
Q ss_pred ccCCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHH-HHHHHHHHHHHHHHcCCchhhHHHhhc
Q 005141 88 SIPIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDA-LISRRQILQAACETLANASSRREYNQG 155 (712)
Q Consensus 88 ~iPlDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a-~~~RfqlI~eAYeVLSDp~~R~~YD~~ 155 (712)
..-.|||+||||+++|+.+|||+|||+++++ |||++..+.. ++.+|+.|++||++|+|+.+|..||..
T Consensus 3 ~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 3 SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred hhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 4456999999999999999999999999998 7999876664 889999999999999999999999985
No 43
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.26 E-value=8.8e-12 Score=98.82 Aligned_cols=54 Identities=22% Similarity=0.345 Sum_probs=49.4
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCC
Q 005141 92 DFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLAN 145 (712)
Q Consensus 92 DyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSD 145 (712)
|||+||||+++++.++||++||+++++ |||+.........+|+.|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 799999999999999999999999988 799976546678899999999999987
No 44
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.17 E-value=3.5e-11 Score=138.88 Aligned_cols=68 Identities=22% Similarity=0.309 Sum_probs=61.5
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhcccCC
Q 005141 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADD 159 (712)
Q Consensus 91 lDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~~~ 159 (712)
.|||+||||+++|+.++||+|||+++++ |||++.+ ..+..+|+.|++||++|+||.+|+.||.+...+
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG 70 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYGHDG 70 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccc
Confidence 4999999999999999999999999988 7999766 456779999999999999999999999986544
No 45
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.15 E-value=6.6e-10 Score=109.60 Aligned_cols=67 Identities=16% Similarity=0.261 Sum_probs=56.9
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHhC-CCCCCCChH-----HHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005141 91 IDFYQALGAETH--FLGDGIRRAYEARISK-PPQYGFSPD-----ALISRRQILQAACETLANASSRREYNQGLA 157 (712)
Q Consensus 91 lDyYeILGV~~~--As~eEIKkAYRkla~~-~PDk~~s~~-----a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~ 157 (712)
.|||+||||+++ ++..+|+++||++.++ |||+..+.. .+.+++..|++||++|+||.+|..|+-.+.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~ 75 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLH 75 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhc
Confidence 389999999996 5789999999999887 899854322 245678999999999999999999997765
No 46
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.14 E-value=7.7e-10 Score=109.72 Aligned_cols=68 Identities=18% Similarity=0.188 Sum_probs=57.1
Q ss_pred CCCcccccCCCCC--CCHHHHHHHHHHHHhC-CCCCCCChHHHHHH-----HHHHHHHHHHcCCchhhHHHhhccc
Q 005141 90 PIDFYQALGAETH--FLGDGIRRAYEARISK-PPQYGFSPDALISR-----RQILQAACETLANASSRREYNQGLA 157 (712)
Q Consensus 90 PlDyYeILGV~~~--As~eEIKkAYRkla~~-~PDk~~s~~a~~~R-----fqlI~eAYeVLSDp~~R~~YD~~L~ 157 (712)
+.|||+||||+++ ++..+|+++||++.++ |||+..+....+++ +..|++||++|+||.+|..|.-.+.
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~ 80 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLR 80 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhc
Confidence 4699999999996 5789999999999887 89986543333333 5899999999999999999998765
No 47
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=3.7e-11 Score=122.65 Aligned_cols=68 Identities=25% Similarity=0.333 Sum_probs=60.3
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCC--hHHHHHHHHHHHHHHHHcCCchhhHHHhhcccC
Q 005141 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFS--PDALISRRQILQAACETLANASSRREYNQGLAD 158 (712)
Q Consensus 91 lDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s--~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~~ 158 (712)
.|.|+||||.++|++.+|+|||++++++ |||+++. ...+..+||.|+.||+||||.++|+.||....-
T Consensus 14 ~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~i 84 (264)
T KOG0719|consen 14 KDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSI 84 (264)
T ss_pred cCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCC
Confidence 3899999999999999999999999988 7999853 335677899999999999999999999987643
No 48
>PHA03102 Small T antigen; Reviewed
Probab=99.10 E-value=5.1e-11 Score=115.80 Aligned_cols=66 Identities=15% Similarity=0.166 Sum_probs=58.9
Q ss_pred CcccccCCCCCC--CHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhcccCCCC
Q 005141 92 DFYQALGAETHF--LGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADDHA 161 (712)
Q Consensus 92 DyYeILGV~~~A--s~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~~~~~ 161 (712)
.+|+||||+++| |.++||+|||+++++ |||++.++ ++|+.|++||++|+|+.+|..||.......+
T Consensus 6 ~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~----e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~ 74 (153)
T PHA03102 6 ELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDE----EKMKELNTLYKKFRESVKSLRDLDGEEDSSS 74 (153)
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchh----HHHHHHHHHHHHHhhHHHhccccccCCcccc
Confidence 579999999999 999999999999887 89997543 5899999999999999999999998766553
No 49
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.07 E-value=1.9e-09 Score=106.71 Aligned_cols=67 Identities=18% Similarity=0.204 Sum_probs=57.6
Q ss_pred CCcccccCCCCCC--CHHHHHHHHHHHHhC-CCCCCCChH-----HHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005141 91 IDFYQALGAETHF--LGDGIRRAYEARISK-PPQYGFSPD-----ALISRRQILQAACETLANASSRREYNQGLA 157 (712)
Q Consensus 91 lDyYeILGV~~~A--s~eEIKkAYRkla~~-~PDk~~s~~-----a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~ 157 (712)
.+||++||++++. +..+|+++||++.++ |||+..+.. .+..++..|++||+||+||.+|..|+-.+.
T Consensus 4 ~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~ 78 (173)
T PRK00294 4 PCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALS 78 (173)
T ss_pred CChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 5899999999985 589999999999887 899864422 245678999999999999999999998875
No 50
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.6e-10 Score=117.15 Aligned_cols=73 Identities=19% Similarity=0.201 Sum_probs=65.5
Q ss_pred cCCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhcccCCCC
Q 005141 89 IPIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADDHA 161 (712)
Q Consensus 89 iPlDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~~~~~ 161 (712)
.--|-|+|||+++.++..|||||||+++++ |||+...++..++.|..|..||+.|+|++.|+.|..+...+.+
T Consensus 97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDGp 170 (230)
T KOG0721|consen 97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDGP 170 (230)
T ss_pred hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCCc
Confidence 345889999999999999999999999988 7999877677788899999999999999999999998766554
No 51
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2e-10 Score=126.26 Aligned_cols=70 Identities=21% Similarity=0.356 Sum_probs=63.3
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhcccCCC
Q 005141 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADDH 160 (712)
Q Consensus 90 PlDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~~~~ 160 (712)
-.|+|.+|||++++++++|||.||+++.- ||||+. .+.+++-|+.|+.||++|+|+++|++||..++...
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~-~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~ken 304 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNM-IPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKKEN 304 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccC-ChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHH
Confidence 47999999999999999999999999865 999987 66677889999999999999999999998877543
No 52
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.97 E-value=3.9e-10 Score=121.00 Aligned_cols=71 Identities=24% Similarity=0.308 Sum_probs=60.5
Q ss_pred cccCCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChH---HHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005141 87 VSIPIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPD---ALISRRQILQAACETLANASSRREYNQGLA 157 (712)
Q Consensus 87 m~iPlDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~---a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~ 157 (712)
..-..|||+||||.++|+..||.||||+++.+ |||.-.+.+ .++++|.-|..|-+|||||++|+.||.+-.
T Consensus 390 qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeD 464 (504)
T KOG0624|consen 390 QSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGED 464 (504)
T ss_pred HhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCC
Confidence 34557999999999999999999999999988 788533332 477889999999999999999999998743
No 53
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=98.96 E-value=9.8e-10 Score=108.04 Aligned_cols=67 Identities=24% Similarity=0.210 Sum_probs=56.8
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHhC-CCCCCCChHH---HHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005141 91 IDFYQALGAETH--FLGDGIRRAYEARISK-PPQYGFSPDA---LISRRQILQAACETLANASSRREYNQGLA 157 (712)
Q Consensus 91 lDyYeILGV~~~--As~eEIKkAYRkla~~-~PDk~~s~~a---~~~RfqlI~eAYeVLSDp~~R~~YD~~L~ 157 (712)
.|||+||||+++ ++.++|+++||++.++ |||+..+... ....+..|++||++|+||.+|..|.-.+.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~ 74 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQ 74 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence 489999999997 6899999999999887 8999755322 22357799999999999999999988775
No 54
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=9.2e-10 Score=113.77 Aligned_cols=124 Identities=18% Similarity=0.266 Sum_probs=95.9
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHhhcccCCCCCCccccCC
Q 005141 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYNQGLADDHADTILTEVP 169 (712)
Q Consensus 91 lDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~~~~~~~~~lei~ 169 (712)
.|||+||||+++++..||.||||+++++ |||++.+++. ..+|..|..||++|-|.+.|..||-.+..
T Consensus 33 enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~-k~~F~~iAtayeilkd~e~rt~ydyaldh----------- 100 (329)
T KOG0722|consen 33 ENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPES-KKLFVKIATAYEILKDNETRTQYDYALDH----------- 100 (329)
T ss_pred hhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchh-hhhhhhhhcccccccchhhHHhHHHHhcC-----------
Confidence 5899999999999999999999999998 6999877665 47899999999999999999999987632
Q ss_pred CccccchHHHHHHhhhHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHhhHhhHHHHHcCCCchhhHhHHHHHHHHHHHHc
Q 005141 170 WDKVPGALLVLQEAGETEVVLRIGESLLRERLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERALKLLQEE 249 (712)
Q Consensus 170 ~~~~~GaL~LLqElGe~~~vl~lg~~~Lq~~~~~~~~~Dv~Ls~ALA~~elarea~~~~~~~~~~aa~~Le~al~LLq~~ 249 (712)
.++++--.-++++..-+...-.|++|..-|+-.. .++ |-++|..+.+|+.-..+.
T Consensus 101 ----------------pd~~fynyyqyyr~r~apkvd~raviVGvl~i~s----~Fq-----yls~~ary~eAI~~~~~v 155 (329)
T KOG0722|consen 101 ----------------PDEVFYNYYQYYRARYAPKVDPRAVIVGVLVILS----AFQ-----YLSNVARYNEAIAYVKRV 155 (329)
T ss_pred ----------------chHHHHHHHHHHHHHhccccCCcEEEEeehhhhh----HHH-----HHHHHHHHHHHHHHHhcc
Confidence 1345555556666555444555666665555322 222 778899999999998876
Q ss_pred CC
Q 005141 250 GA 251 (712)
Q Consensus 250 g~ 251 (712)
++
T Consensus 156 pk 157 (329)
T KOG0722|consen 156 PK 157 (329)
T ss_pred hh
Confidence 54
No 55
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=9e-10 Score=111.40 Aligned_cols=68 Identities=25% Similarity=0.365 Sum_probs=60.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCCh-HHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005141 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSP-DALISRRQILQAACETLANASSRREYNQGLA 157 (712)
Q Consensus 90 PlDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~-~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~ 157 (712)
..|||+||||.++|+.+||++||++++++ |||++.+. ..++.+|+.|.+||+||+|+.+|..||....
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 46999999999999999999999999987 89997665 3344589999999999999999999999875
No 56
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=2.9e-09 Score=116.37 Aligned_cols=72 Identities=21% Similarity=0.285 Sum_probs=64.1
Q ss_pred CcccCCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCC-ChHHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005141 86 HVSIPIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGF-SPDALISRRQILQAACETLANASSRREYNQGLA 157 (712)
Q Consensus 86 ~m~iPlDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~-s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~ 157 (712)
.++.-.|||.||||.++++.+|||+|||++++. |||++. +...++.+|+.+.+||.+|+||.+|.+||.+-.
T Consensus 368 kkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~d 441 (486)
T KOG0550|consen 368 KKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQD 441 (486)
T ss_pred HHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccc
Confidence 455668999999999999999999999999987 699875 447789999999999999999999999998743
No 57
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=98.66 E-value=2.2e-08 Score=93.52 Aligned_cols=56 Identities=20% Similarity=0.175 Sum_probs=46.9
Q ss_pred CCCcccCCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcC
Q 005141 84 NRHVSIPIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLA 144 (712)
Q Consensus 84 ~~~m~iPlDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLS 144 (712)
+..|.. .++|+||||++++|.+|||++||+++++ |||++.++ ..|+.|++||++|.
T Consensus 59 ~~~Ms~-~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs~----~~~~kIneAyevL~ 115 (116)
T PTZ00100 59 ENPMSK-SEAYKILNISPTASKERIREAHKQLMLRNHPDNGGST----YIASKVNEAKDLLL 115 (116)
T ss_pred cCCCCH-HHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHHHh
Confidence 445543 5899999999999999999999999887 79987554 35678999999985
No 58
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=98.66 E-value=2.1e-08 Score=105.33 Aligned_cols=55 Identities=29% Similarity=0.377 Sum_probs=48.0
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCC----Ch---HHHHHHHHHHHHHHHHcCC
Q 005141 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYGF----SP---DALISRRQILQAACETLAN 145 (712)
Q Consensus 91 lDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~----s~---~a~~~RfqlI~eAYeVLSD 145 (712)
.|+|+||||++++|.+|||+|||+++++ |||+.. ++ +.++++|+.|++||++|+.
T Consensus 200 ~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 200 EDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999987 799842 22 3467899999999999975
No 59
>PHA02624 large T antigen; Provisional
Probab=98.53 E-value=6.2e-08 Score=111.22 Aligned_cols=59 Identities=15% Similarity=0.158 Sum_probs=53.7
Q ss_pred CCcccccCCCCCC--CHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcCCchhhHHHh
Q 005141 91 IDFYQALGAETHF--LGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLANASSRREYN 153 (712)
Q Consensus 91 lDyYeILGV~~~A--s~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD 153 (712)
.++|+||||+++| +.++||+|||+++++ |||++.+ .++|+.|++||++|+|+.+|..|.
T Consensus 11 ~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd----eekfk~Ln~AYevL~d~~k~~r~~ 72 (647)
T PHA02624 11 KELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD----EEKMKRLNSLYKKLQEGVKSARQS 72 (647)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc----HHHHHHHHHHHHHHhcHHHhhhcc
Confidence 4799999999999 999999999999988 7999754 358999999999999999999993
No 60
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.42 E-value=3.4e-06 Score=83.86 Aligned_cols=67 Identities=13% Similarity=0.076 Sum_probs=56.0
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHhC-CCCCCCChHH-----HHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005141 91 IDFYQALGAETH--FLGDGIRRAYEARISK-PPQYGFSPDA-----LISRRQILQAACETLANASSRREYNQGLA 157 (712)
Q Consensus 91 lDyYeILGV~~~--As~eEIKkAYRkla~~-~PDk~~s~~a-----~~~RfqlI~eAYeVLSDp~~R~~YD~~L~ 157 (712)
.|||+++|+++. .+...+++.|+++.++ |||+-.+... +.+.-..|++||.+|+||-+|..|=-.+.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~ 76 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN 76 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence 489999999997 6899999999999887 8998543222 33356789999999999999999988776
No 61
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.26 E-value=1e-06 Score=97.38 Aligned_cols=71 Identities=18% Similarity=0.227 Sum_probs=61.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCC-----hHHHHHHHHHHHHHHHHcCCchhhHHHhhcccCCC
Q 005141 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFS-----PDALISRRQILQAACETLANASSRREYNQGLADDH 160 (712)
Q Consensus 90 PlDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s-----~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~~~~ 160 (712)
--|-|+||||+.+++..+||++||++..+ ||||-.. ....++.+..|..||..|+|.+.|+.|-.+...+.
T Consensus 97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~ 173 (610)
T COG5407 97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDS 173 (610)
T ss_pred CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCC
Confidence 35889999999999999999999999988 7998543 33567889999999999999999999988765544
No 62
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.19 E-value=2.6e-05 Score=76.33 Aligned_cols=55 Identities=22% Similarity=0.211 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHHHhC-CCCCCCC--h---HHHHHHHHHHHHHHHHcCCchhhHHHhhccc
Q 005141 103 FLGDGIRRAYEARISK-PPQYGFS--P---DALISRRQILQAACETLANASSRREYNQGLA 157 (712)
Q Consensus 103 As~eEIKkAYRkla~~-~PDk~~s--~---~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~ 157 (712)
-+..+|+++||++.++ |||+..+ . ..+...+..|++||++|+||.+|..|.-.+.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~ 63 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH 63 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc
Confidence 3678999999999887 8997432 2 2356789999999999999999999999886
No 63
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=2.7e-05 Score=81.85 Aligned_cols=70 Identities=21% Similarity=0.280 Sum_probs=56.8
Q ss_pred CCcccccCCCC---CCCHHHHHHHHHHHHhC-CCCCCCC--hHHHHHHHHHHHHHHHHcCCchhhHHHhhcccCCC
Q 005141 91 IDFYQALGAET---HFLGDGIRRAYEARISK-PPQYGFS--PDALISRRQILQAACETLANASSRREYNQGLADDH 160 (712)
Q Consensus 91 lDyYeILGV~~---~As~eEIKkAYRkla~~-~PDk~~s--~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L~~~~ 160 (712)
.|+|-+||++. .+++.+|++|.++.+.+ |||+... .-.-...|++|+.||+||+|+.+|..||.......
T Consensus 43 ~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~ad 118 (379)
T COG5269 43 VDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFDAD 118 (379)
T ss_pred hhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccccccC
Confidence 68999999997 78999999999998876 7997411 11123569999999999999999999998765443
No 64
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=4.9e-05 Score=77.10 Aligned_cols=62 Identities=15% Similarity=0.234 Sum_probs=55.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCCh-HHHHHHHHHHHHHHHHcCCchhhHH
Q 005141 90 PIDFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSP-DALISRRQILQAACETLANASSRRE 151 (712)
Q Consensus 90 PlDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~-~a~~~RfqlI~eAYeVLSDp~~R~~ 151 (712)
.++-|+||.|.|..+.++||+-||+++.- |||++.++ +.+..-|..+..||..|-|+..|..
T Consensus 52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr 115 (250)
T KOG1150|consen 52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKR 115 (250)
T ss_pred ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 45789999999999999999999999765 99999876 6677889999999999999986654
No 65
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=4.8e-05 Score=78.49 Aligned_cols=53 Identities=25% Similarity=0.355 Sum_probs=47.3
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHH-HcCC
Q 005141 92 DFYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACE-TLAN 145 (712)
Q Consensus 92 DyYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYe-VLSD 145 (712)
.||+||||...|+.++++.||.+++++ |||.+ +.++..+||+.|.+||. ||+.
T Consensus 48 e~fril~v~e~~~adevr~af~~lakq~hpdsg-s~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 48 ECFRILGVEEGADADEVREAFHDLAKQVHPDSG-SEEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHhcccccCchhHHHHHHHHHHHHcCCCCC-CccccHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999998 79987 45566789999999997 8864
No 66
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.0017 Score=60.32 Aligned_cols=49 Identities=22% Similarity=0.203 Sum_probs=41.5
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHh-CCCCCCCChHHHHHHHHHHHHHHHHcCCc
Q 005141 94 YQALGAETHFLGDGIRRAYEARIS-KPPQYGFSPDALISRRQILQAACETLANA 146 (712)
Q Consensus 94 YeILGV~~~As~eEIKkAYRkla~-~~PDk~~s~~a~~~RfqlI~eAYeVLSDp 146 (712)
-.||||+++++.+.||.|+|+... .|||++-|+--+. .|+||+++|...
T Consensus 59 ~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlAs----KINEAKdlLe~~ 108 (112)
T KOG0723|consen 59 ALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLAS----KINEAKDLLEGT 108 (112)
T ss_pred HHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHHH----HHHHHHHHHhcc
Confidence 469999999999999999999754 5899999886543 589999999753
No 67
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=94.40 E-value=0.043 Score=66.83 Aligned_cols=50 Identities=20% Similarity=0.064 Sum_probs=41.4
Q ss_pred CcccccCCCCC----CCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcC
Q 005141 92 DFYQALGAETH----FLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLA 144 (712)
Q Consensus 92 DyYeILGV~~~----As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLS 144 (712)
+-|+||.|+-+ -..+.|||+|+|++.+ ||||++. -.+.|..++.|||.|+
T Consensus 1282 ~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE---GRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1282 LAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE---GREMFERVNKAYELLS 1336 (2235)
T ss_pred HHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch---HHHHHHHHHHHHHHHH
Confidence 46999999863 3457899999999988 7999753 3467999999999999
No 68
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=90.18 E-value=0.18 Score=50.23 Aligned_cols=53 Identities=28% Similarity=0.386 Sum_probs=43.2
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHhC-CCCCC----CC---hHHHHHHHHHHHHHHHHc
Q 005141 91 IDFYQALGAETHFLGDGIRRAYEARISK-PPQYG----FS---PDALISRRQILQAACETL 143 (712)
Q Consensus 91 lDyYeILGV~~~As~eEIKkAYRkla~~-~PDk~----~s---~~a~~~RfqlI~eAYeVL 143 (712)
.|-|.+|||..++..++|+++||++... |||+- -. -+.+..+++.|++||+..
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 6889999999999999999999999876 68852 11 235677889999999753
No 69
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=89.40 E-value=0.53 Score=46.87 Aligned_cols=72 Identities=24% Similarity=0.354 Sum_probs=48.2
Q ss_pred CcccCCCcccccCCCCCC--CHHHHHHHHHHHHhC-CCCC------CCChHHHHHHHHHHHHHHHHcCCchhhHHHhhcc
Q 005141 86 HVSIPIDFYQALGAETHF--LGDGIRRAYEARISK-PPQY------GFSPDALISRRQILQAACETLANASSRREYNQGL 156 (712)
Q Consensus 86 ~m~iPlDyYeILGV~~~A--s~eEIKkAYRkla~~-~PDk------~~s~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L 156 (712)
.|..|.+||.+.|..... .++-++--|-...++ |||+ +..+ .+.+.-..|++||.+|.||-+|+.|=-.+
T Consensus 3 ~~~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d-~a~eqSa~lnkAY~TLk~pL~RA~Yilkl 81 (168)
T KOG3192|consen 3 KMGSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTD-QASEQSAELNKAYDTLKDPLARARYLLKL 81 (168)
T ss_pred ccchHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccch-hHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 466788999999877654 344444244444433 4554 2222 33344567999999999999999998877
Q ss_pred cC
Q 005141 157 AD 158 (712)
Q Consensus 157 ~~ 158 (712)
..
T Consensus 82 ~g 83 (168)
T KOG3192|consen 82 KG 83 (168)
T ss_pred hC
Confidence 64
No 70
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=85.55 E-value=1.1 Score=51.26 Aligned_cols=47 Identities=13% Similarity=0.068 Sum_probs=33.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhC-CCCCC----CChH---HHHHHHHHHHHHHHHcC
Q 005141 98 GAETHFLGDGIRRAYEARISK-PPQYG----FSPD---ALISRRQILQAACETLA 144 (712)
Q Consensus 98 GV~~~As~eEIKkAYRkla~~-~PDk~----~s~~---a~~~RfqlI~eAYeVLS 144 (712)
++..=.+.++|||+|||..+. ||||- ++.. .+++-|.++++||....
T Consensus 395 sltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f~ 449 (453)
T KOG0431|consen 395 SLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKFN 449 (453)
T ss_pred chhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhhh
Confidence 344557999999999999987 99973 3332 23455788888886543
No 71
>PF13446 RPT: A repeated domain in UCH-protein
Probab=82.31 E-value=2.1 Score=35.58 Aligned_cols=30 Identities=23% Similarity=0.460 Sum_probs=26.6
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHhCCCC
Q 005141 92 DFYQALGAETHFLGDGIRRAYEARISKPPQ 121 (712)
Q Consensus 92 DyYeILGV~~~As~eEIKkAYRkla~~~PD 121 (712)
+-|++|||+++.+++.|..+|+.+....|+
T Consensus 6 ~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~~~P~ 35 (62)
T PF13446_consen 6 EAYEILGIDEDTDDDFIISAFQSKVNDDPS 35 (62)
T ss_pred HHHHHhCcCCCCCHHHHHHHHHHHHHcChH
Confidence 469999999999999999999999886554
No 72
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=70.03 E-value=7.6 Score=38.75 Aligned_cols=69 Identities=22% Similarity=0.236 Sum_probs=50.4
Q ss_pred CcccccCCCCCCC--HHHHHHHHHHHHhC-CCCCCCChHH-----HHHHHHHHHHHHHHcCCchhhHHHhhcccCCC
Q 005141 92 DFYQALGAETHFL--GDGIRRAYEARISK-PPQYGFSPDA-----LISRRQILQAACETLANASSRREYNQGLADDH 160 (712)
Q Consensus 92 DyYeILGV~~~As--~eEIKkAYRkla~~-~PDk~~s~~a-----~~~RfqlI~eAYeVLSDp~~R~~YD~~L~~~~ 160 (712)
||+.+.|.++.+. .+.++.-|+.+... |||+..+... ...++..++.||.+|.||-+|..|-..+..+.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~~g~ 78 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALADGL 78 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcccc
Confidence 4555666666553 45577778888776 7997654332 34578889999999999999999998877544
No 73
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=65.59 E-value=13 Score=29.90 Aligned_cols=44 Identities=23% Similarity=0.234 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhhCCCCcccccCccccccchhhhhhhHHHHHHHHhhCChHHHHHHhcc
Q 005141 372 IADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGL 430 (712)
Q Consensus 372 I~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~lE~a~C~LLLGq~~eA~~~l~l 430 (712)
..+|..+|+++.+. .....++.+..+.|++-.|+.++|...|..
T Consensus 7 ~~~A~~~~~~~l~~---------------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~ 50 (68)
T PF14559_consen 7 YDEAIELLEKALQR---------------NPDNPEARLLLAQCYLKQGQYDEAEELLER 50 (68)
T ss_dssp HHHHHHHHHHHHHH---------------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH---------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45788888887654 123479999999999999999999999953
No 74
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=64.13 E-value=10 Score=36.69 Aligned_cols=48 Identities=25% Similarity=0.201 Sum_probs=31.7
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHhC-CCCCCCChHHHHHHHHHHHHHHHHcC
Q 005141 93 FYQALGAETHFLGDGIRRAYEARISK-PPQYGFSPDALISRRQILQAACETLA 144 (712)
Q Consensus 93 yYeILGV~~~As~eEIKkAYRkla~~-~PDk~~s~~a~~~RfqlI~eAYeVLS 144 (712)
-.+||||++..+.++|.+-|.++-.. .|++|-|.- +.. .|..|.+.|-
T Consensus 60 A~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfY-LQS---KV~rAKErl~ 108 (127)
T PF03656_consen 60 ARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFY-LQS---KVFRAKERLE 108 (127)
T ss_dssp HHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HH-HHH---HHHHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHH-HHH---HHHHHHHHHH
Confidence 57899999999999999999999876 598887643 222 3556666663
No 75
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=62.77 E-value=28 Score=28.81 Aligned_cols=63 Identities=22% Similarity=0.258 Sum_probs=42.3
Q ss_pred HHHHhhhHHHHHHHHHHHhhh--cCCCChhhHHHHHHHHHhhHhhHHHHHcCCCchhhHhHHHHHHHHHHHH
Q 005141 179 VLQEAGETEVVLRIGESLLRE--RLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERALKLLQE 248 (712)
Q Consensus 179 LLqElGe~~~vl~lg~~~Lq~--~~~~~~~~Dv~Ls~ALA~~elarea~~~~~~~~~~aa~~Le~al~LLq~ 248 (712)
++++.|++++.+++-++.|+- ..+. ...+ +|.++..+|.--... .+|+.|.+.+++++++.+.
T Consensus 14 ~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~----~a~~~~~lg~~~~~~--g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 14 VYRELGRYDEALDYYEKALDIEEQLGD-DHPD----TANTLNNLGECYYRL--GDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHHHHTTT-HHHH----HHHHHHHHHHHHHHT--THHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHCC-CCHH----HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhhcC
Confidence 677999999999999999863 2232 1222 244455555444444 3699999999999998763
No 76
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=54.82 E-value=32 Score=27.52 Aligned_cols=43 Identities=16% Similarity=0.141 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhhCCCCcccccCccccccchhhhhhhHHHHHHHHhhCChHHHHHHhc
Q 005141 372 IADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLG 429 (712)
Q Consensus 372 I~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~lE~a~C~LLLGq~~eA~~~l~ 429 (712)
..+|...|+++.+. .....+..+.+|.|.+-.|++++|..++.
T Consensus 13 ~~~A~~~~~~~l~~---------------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 55 (65)
T PF13432_consen 13 YDEAIAAFEQALKQ---------------DPDNPEAWYLLGRILYQQGRYDEALAYYE 55 (65)
T ss_dssp HHHHHHHHHHHHCC---------------STTHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 57899999999865 13357999999999999999999999884
No 77
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=52.45 E-value=17 Score=37.31 Aligned_cols=43 Identities=14% Similarity=0.136 Sum_probs=30.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHcCCchhh
Q 005141 100 ETHFLGDGIRRAYEARISKPPQYGFSPDALISRRQILQAACETLANASSR 149 (712)
Q Consensus 100 ~~~As~eEIKkAYRkla~~~PDk~~s~~a~~~RfqlI~eAYeVLSDp~~R 149 (712)
+++|+-|||++|+.++..+|-++ + +....|..|||.+.=...|
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd----~---~~~~~IEaAYD~ILM~rL~ 43 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD----E---KSREAIEAAYDAILMERLR 43 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC----H---HHHHHHHHHHHHHHHHHHH
Confidence 57899999999999998887322 1 2234588999966544433
No 78
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=49.44 E-value=25 Score=24.19 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHhhCChHHHHHHhc
Q 005141 406 EFALERGLCSLLVGKLDECRLWLG 429 (712)
Q Consensus 406 Dv~lE~a~C~LLLGq~~eA~~~l~ 429 (712)
|..+..|.|+..+|+.++|...++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~ 24 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQ 24 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCHHHHHHHHH
Confidence 456788999999999999999984
No 79
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=43.62 E-value=2.6e+02 Score=29.91 Aligned_cols=52 Identities=10% Similarity=0.088 Sum_probs=33.3
Q ss_pred HhhhHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHhhHhhHHHHHcCCCchhhHhHHHHHH
Q 005141 182 EAGETEVVLRIGESLLRERLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERA 242 (712)
Q Consensus 182 ElGe~~~vl~lg~~~Lq~~~~~~~~~Dv~Ls~ALA~~elarea~~~~~~~~~~aa~~Le~a 242 (712)
..|+++..++.-+.++.....++...|..+-++..+.+ . .++..|+..+++.
T Consensus 192 ~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~-------~--g~~~~A~~~~~~v 243 (263)
T PRK10803 192 NKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQD-------K--GDTAKAKAVYQQV 243 (263)
T ss_pred HcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHH-------c--CCHHHHHHHHHHH
Confidence 45666777777777776555666777877777666532 2 2477777777644
No 80
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=40.70 E-value=4.6e+02 Score=33.61 Aligned_cols=45 Identities=9% Similarity=-0.091 Sum_probs=34.3
Q ss_pred chHHHHHHHHHHHhhCCCCcccccCccccccchhhhhhhHHHHHHHHhhCChHHHHHHhc
Q 005141 370 HLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLG 429 (712)
Q Consensus 370 ~lI~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~lE~a~C~LLLGq~~eA~~~l~ 429 (712)
.-..+|...|++..+. .....+++...|.|++-.|+.++|...|.
T Consensus 283 g~~~~A~~~l~~aL~~---------------~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~ 327 (1157)
T PRK11447 283 GQGGKAIPELQQAVRA---------------NPKDSEALGALGQAYSQQGDRARAVAQFE 327 (1157)
T ss_pred CCHHHHHHHHHHHHHh---------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3456888888877653 11226888999999999999999998874
No 81
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=36.78 E-value=1.5e+02 Score=23.76 Aligned_cols=56 Identities=25% Similarity=0.379 Sum_probs=40.1
Q ss_pred HHHHhhhHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHhhHhhHHHHHcCCCchhhHhHHHHHHHHH
Q 005141 179 VLQEAGETEVVLRIGESLLRERLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERALKL 245 (712)
Q Consensus 179 LLqElGe~~~vl~lg~~~Lq~~~~~~~~~Dv~Ls~ALA~~elarea~~~~~~~~~~aa~~Le~al~L 245 (712)
.+.+.|+++..++.=+++++-. +...++...++++|...+ .++..|...+++++++
T Consensus 12 ~~~~~~~~~~A~~~~~~ai~~~---p~~~~~~~~~g~~~~~~~--------~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 12 IYFQQGDYEEAIEYFEKAIELD---PNNAEAYYNLGLAYMKLG--------KDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHS---TTHHHHHHHHHHHHHHTT--------THHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhC--------ccHHHHHHHHHHHHHc
Confidence 4567899999998888888732 334667677777765543 1478888888888875
No 82
>TIGR02267 Myxococcus xanthus paralogous family TIGR02267. This family consists of at least 7 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=34.28 E-value=13 Score=35.63 Aligned_cols=29 Identities=38% Similarity=0.483 Sum_probs=26.1
Q ss_pred CCCChhhHHHHHHHHHhhccCCCCCCCCC
Q 005141 454 DDNDLPGLCKLLETWLAEVVFPRFRDTSD 482 (712)
Q Consensus 454 ~~~dLpGLC~y~e~WL~~~Vfp~FRDt~~ 482 (712)
+.+|+-|-|...+.||.-+|.|+||+...
T Consensus 88 daGDldgARq~m~dvLAVEVVP~YR~~Ae 116 (123)
T TIGR02267 88 DAGDLDGARALLLDVLAVEVVPFYRELAQ 116 (123)
T ss_pred hccChHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34899999999999999999999998764
No 83
>PF09543 DUF2379: Protein of unknown function (DUF2379); InterPro: IPR011753 This family consists of at least 7 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. The function is unknown.
Probab=28.06 E-value=20 Score=34.44 Aligned_cols=29 Identities=31% Similarity=0.522 Sum_probs=26.2
Q ss_pred CCCChhhHHHHHHHHHhhccCCCCCCCCC
Q 005141 454 DDNDLPGLCKLLETWLAEVVFPRFRDTSD 482 (712)
Q Consensus 454 ~~~dLpGLC~y~e~WL~~~Vfp~FRDt~~ 482 (712)
+.+|+-|-|.-.+.||.-+|.|+||++..
T Consensus 86 daGD~dgARq~m~dvLAVEvVP~YR~~Ae 114 (121)
T PF09543_consen 86 DAGDLDGARQEMRDVLAVEVVPHYREIAE 114 (121)
T ss_pred hccCHHHHHHHHHHHHhhccCHHHHHHHH
Confidence 34889999999999999999999999764
No 84
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.63 E-value=1.4e+02 Score=32.94 Aligned_cols=44 Identities=23% Similarity=0.351 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhhCCCCcccccCccccccchhhhhhhHHHHHHHHhhCChHHHHHHhcc
Q 005141 372 IADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGL 430 (712)
Q Consensus 372 I~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~lE~a~C~LLLGq~~eA~~~l~l 430 (712)
|++|--+++.+.+- ...-.++-..++||++.+|+.+||+..|+.
T Consensus 189 ~qdAfyifeE~s~k---------------~~~T~~llnG~Av~~l~~~~~eeAe~lL~e 232 (299)
T KOG3081|consen 189 IQDAFYIFEELSEK---------------TPPTPLLLNGQAVCHLQLGRYEEAESLLEE 232 (299)
T ss_pred hhhHHHHHHHHhcc---------------cCCChHHHccHHHHHHHhcCHHHHHHHHHH
Confidence 99999999999862 012256777899999999999999999853
No 85
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=27.59 E-value=1.4e+03 Score=29.32 Aligned_cols=25 Identities=12% Similarity=0.162 Sum_probs=16.5
Q ss_pred HhhHHHHHcCCCchhhHhHHHHHHHHH
Q 005141 219 DISRDAMAFNPPDYIGGCEMLERALKL 245 (712)
Q Consensus 219 elarea~~~~~~~~~~aa~~Le~al~L 245 (712)
.++...+.++ +++.|.+.+++++++
T Consensus 466 ~~a~~~~~~g--~~~eA~~~~~~Al~~ 490 (1157)
T PRK11447 466 QQAEALENQG--KWAQAAELQRQRLAL 490 (1157)
T ss_pred HHHHHHHHCC--CHHHHHHHHHHHHHh
Confidence 3444444443 588888888888764
No 86
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=27.48 E-value=6.4e+02 Score=25.28 Aligned_cols=75 Identities=13% Similarity=0.116 Sum_probs=50.0
Q ss_pred HHhhhHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHhhHhhHHHHHcCCCchhhHhHHHHHHHHHHHHcCCCCCCh
Q 005141 181 QEAGETEVVLRIGESLLRERLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERALKLLQEEGASSLAP 256 (712)
Q Consensus 181 qElGe~~~vl~lg~~~Lq~~~~~~~~~Dv~Ls~ALA~~elarea~~~~~~~~~~aa~~Le~al~LLq~~g~~~l~p 256 (712)
...|++..++...+..++.....+...++..-+++++....+..+ ...++....-..+..-..++++...+...+
T Consensus 53 y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~-~~~~D~~~~~~A~~~~~~li~~yP~S~y~~ 127 (203)
T PF13525_consen 53 YKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGIL-RSDRDQTSTRKAIEEFEELIKRYPNSEYAE 127 (203)
T ss_dssp HHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH--TT---HHHHHHHHHHHHHHHH-TTSTTHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccch-hcccChHHHHHHHHHHHHHHHHCcCchHHH
Confidence 466889999999999998777777889999999999988876664 223555555666666667777765444333
No 87
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=26.40 E-value=1.3e+03 Score=28.89 Aligned_cols=125 Identities=22% Similarity=0.177 Sum_probs=76.6
Q ss_pred chHHHHHHhhhHHHHHHHHHHHhhhcC--CCChhhHHHHHHHHHhhHhhHHHHHcCCCchhhHhHHHHHHHHHHHHc---
Q 005141 175 GALLVLQEAGETEVVLRIGESLLRERL--PKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERALKLLQEE--- 249 (712)
Q Consensus 175 GaL~LLqElGe~~~vl~lg~~~Lq~~~--~~~~~~Dv~Ls~ALA~~elarea~~~~~~~~~~aa~~Le~al~LLq~~--- 249 (712)
++=.....++-+++.++++.+.+.... ...+..=.-+..+++|--.++++=-.+.+ -....++++.|++.
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR-----~~~h~kslqale~av~~ 473 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSER-----DALHKKSLQALEEAVQF 473 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHH-----HHHHHHHHHHHHHHHhc
Confidence 333345688889999999999997432 22334445677788886666554222111 11234444555443
Q ss_pred CCCC--------CChHHHHHHHHHhHhhChhhH---------HHhhCCCCChhhHHHHHHHHHHHHHHHHHhCC
Q 005141 250 GASS--------LAPDLQAQIDETLEEINPRCV---------LELLGLPLSGEYQARREEGLHGMLNILWAVGG 306 (712)
Q Consensus 250 g~~~--------l~p~Lq~eI~~~L~~L~P~ri---------LELLalPl~~e~~~~Rq~GL~lLr~lL~~rgg 306 (712)
+..+ +.-.+|++|+.++...+-+-- +-||++=++. ..+-+.|+.++.+.|.+-|.
T Consensus 474 d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa--~kr~~~Al~vvd~al~E~~~ 545 (799)
T KOG4162|consen 474 DPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSA--QKRLKEALDVVDAALEEFGD 545 (799)
T ss_pred CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHhhh
Confidence 1111 335789999999986654332 2457776755 34778899999999988753
No 88
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=26.34 E-value=2.2e+02 Score=30.28 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=29.2
Q ss_pred CchhhHhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhHh
Q 005141 230 PDYIGGCEMLERALKLLQEEGASSLAPDLQAQIDETLEE 268 (712)
Q Consensus 230 ~~~~~aa~~Le~al~LLq~~g~~~l~p~Lq~eI~~~L~~ 268 (712)
.+|..|.++|-.|..+|-+.|+...+-+|-.-+-+.|++
T Consensus 4 kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~ 42 (260)
T PF04190_consen 4 KKYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEK 42 (260)
T ss_dssp T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHH
Confidence 359999999999999998988766666777666666665
No 89
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=26.02 E-value=2.3e+02 Score=26.95 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=37.6
Q ss_pred HHHHHhhhHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHhhHhhHHHHHcCCCchhhHhHHHHHHH
Q 005141 178 LVLQEAGETEVVLRIGESLLRERLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERAL 243 (712)
Q Consensus 178 ~LLqElGe~~~vl~lg~~~Lq~~~~~~~~~Dv~Ls~ALA~~elarea~~~~~~~~~~aa~~Le~al 243 (712)
+.+..+|+.++.+.+-++.|...+....+....+-.+-++..++ +++.|..+|++++
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG---------~~deA~~~L~~~~ 65 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLG---------RYDEALALLEEAL 65 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHH
Confidence 34556788888888888888766666666666665555554433 3667777777664
No 90
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=25.81 E-value=3.4e+02 Score=21.51 Aligned_cols=55 Identities=20% Similarity=0.224 Sum_probs=36.9
Q ss_pred HHHHhhhHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHhhHhhHHHHHcCCCchhhHhHHHHHHHHH
Q 005141 179 VLQEAGETEVVLRIGESLLRERLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERALKL 245 (712)
Q Consensus 179 LLqElGe~~~vl~lg~~~Lq~~~~~~~~~Dv~Ls~ALA~~elarea~~~~~~~~~~aa~~Le~al~L 245 (712)
.+.+.|+++..++.-+++++.. +...++.+..+ +-.+.++ +|..|...+++++++
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~---P~~~~a~~~lg-------~~~~~~g--~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD---PDNPEAWYLLG-------RILYQQG--RYDEALAYYERALEL 60 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS---TTHHHHHHHHH-------HHHHHTT---HHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC---CCCHHHHHHHH-------HHHHHcC--CHHHHHHHHHHHHHH
Confidence 5678999999999999999743 33344444333 3344454 588888888888753
No 91
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=24.75 E-value=1.4e+02 Score=24.16 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.9
Q ss_pred hhhhHHHHHHHHhhCChHHHHHHhc
Q 005141 405 MEFALERGLCSLLVGKLDECRLWLG 429 (712)
Q Consensus 405 ~Dv~lE~a~C~LLLGq~~eA~~~l~ 429 (712)
..+...+|.|..-+|+.++|...|.
T Consensus 29 ~~~~~~~a~~~~~~g~~~~A~~~l~ 53 (73)
T PF13371_consen 29 PELWLQRARCLFQLGRYEEALEDLE 53 (73)
T ss_pred chhhHHHHHHHHHhccHHHHHHHHH
Confidence 5788899999999999999999984
No 92
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=24.36 E-value=94 Score=21.39 Aligned_cols=22 Identities=27% Similarity=0.203 Sum_probs=18.8
Q ss_pred hHHHHHHHHhhCChHHHHHHhc
Q 005141 408 ALERGLCSLLVGKLDECRLWLG 429 (712)
Q Consensus 408 ~lE~a~C~LLLGq~~eA~~~l~ 429 (712)
.+..|-.++..|+.++|+.++.
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4567888999999999999874
No 93
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=24.26 E-value=1.5e+02 Score=20.35 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=21.8
Q ss_pred HHhhHhhHHHHHcCCCchhhHhHHHHHHHHH
Q 005141 215 LAYVDISRDAMAFNPPDYIGGCEMLERALKL 245 (712)
Q Consensus 215 LA~~elarea~~~~~~~~~~aa~~Le~al~L 245 (712)
-++..+|.-.+..+ +|.+|.+.+++++++
T Consensus 2 ~~~~~lg~~~~~~~--~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLG--NYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CHHHHHHHHHHHHHH
Confidence 35566677777775 599999999999876
No 94
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=24.06 E-value=1.2e+02 Score=28.90 Aligned_cols=47 Identities=11% Similarity=0.006 Sum_probs=36.2
Q ss_pred CCchHHHHHHHHHHHhhCCCCcccccCccccccchhhhhhhHHHHHHHHhhCChHHHHHHhc
Q 005141 368 QPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLG 429 (712)
Q Consensus 368 kP~lI~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~lE~a~C~LLLGq~~eA~~~l~ 429 (712)
+=....+|...|+++... .....+++..+|.|...+|++++|...++
T Consensus 36 ~~g~~~~A~~~~~~al~~---------------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~ 82 (144)
T PRK15359 36 QEGDYSRAVIDFSWLVMA---------------QPWSWRAHIALAGTWMMLKEYTTAINFYG 82 (144)
T ss_pred HcCCHHHHHHHHHHHHHc---------------CCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 334567888888888754 12236888999999999999999999985
No 95
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=23.96 E-value=1.2e+03 Score=27.14 Aligned_cols=23 Identities=13% Similarity=0.085 Sum_probs=13.8
Q ss_pred hhhHHHHHHHHhhCChHHHHHHh
Q 005141 406 EFALERGLCSLLVGKLDECRLWL 428 (712)
Q Consensus 406 Dv~lE~a~C~LLLGq~~eA~~~l 428 (712)
+....++.+++..|+.++|...+
T Consensus 262 ~~~~~~~~~~~~~~~~~~A~~~~ 284 (899)
T TIGR02917 262 LAHYLKALVDFQKKNYEDARETL 284 (899)
T ss_pred hHHHHHHHHHHHhcCHHHHHHHH
Confidence 44555566666666666666655
No 96
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=23.92 E-value=1.4e+03 Score=27.95 Aligned_cols=43 Identities=14% Similarity=0.187 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhhCCCCcccccCccccccchhhhhhhHHHHHHHHhhCChHHHHHHhc
Q 005141 372 IADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLG 429 (712)
Q Consensus 372 I~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~lE~a~C~LLLGq~~eA~~~l~ 429 (712)
..+|...|++.... .....++.+.++.+++=+|+.++|+..+.
T Consensus 409 ~~~A~~~l~~al~l---------------~Pd~~~l~~~~a~~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 409 PRAAENELKKAEVL---------------EPRNINLEVEQAWTALDLQEWRQMDVLTD 451 (765)
T ss_pred HHHHHHHHHHHHhh---------------CCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 47888888877653 12235788999999999999999999883
No 97
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=23.26 E-value=2.2e+02 Score=31.49 Aligned_cols=56 Identities=11% Similarity=-0.031 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhhhccCCCchHHHHHHHHHHHhhCCCCcccccCccccccchhhhhhhHHHHHHHHhhCChHHHHHHhc
Q 005141 352 AYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLG 429 (712)
Q Consensus 352 ~YlaalAliA~GF~~rkP~lI~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~lE~a~C~LLLGq~~eA~~~l~ 429 (712)
.|.-+.+|+..| -..+|...++++... . ......++-+|+|++-+|+.++|...+.
T Consensus 39 ~~~~a~~~~~~g-------~~~eAl~~~~~Al~l----~-----------P~~~~a~~~lg~~~~~lg~~~eA~~~~~ 94 (356)
T PLN03088 39 YADRAQANIKLG-------NFTEAVADANKAIEL----D-----------PSLAKAYLRKGTACMKLEEYQTAKAALE 94 (356)
T ss_pred HHHHHHHHHHcC-------CHHHHHHHHHHHHHh----C-----------cCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 455566666553 456677777766543 0 1125678899999999999999999984
No 98
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.12 E-value=30 Score=37.27 Aligned_cols=83 Identities=18% Similarity=0.294 Sum_probs=52.5
Q ss_pred HHHHHhhCChHHHHHHhccCCCCCCCCChHHHHHHHhhCCCCCCCCh-hhHHHHH-------HHHHh--hccCCCCCCCC
Q 005141 412 GLCSLLVGKLDECRLWLGLDSDKSPYRNPAIVDFVLENSKEADDNDL-PGLCKLL-------ETWLA--EVVFPRFRDTS 481 (712)
Q Consensus 412 a~C~LLLGq~~eA~~~l~l~~~~s~~~d~~~~~fI~~~S~~~~~~dL-pGLC~y~-------e~WL~--~~Vfp~FRDt~ 481 (712)
|--+-+|||.++|...++.---+| -+..++.|-.. +--| .|||.+| .+=|+ ++.+|.|-|++
T Consensus 161 A~yaa~leqY~~Ai~iyeqva~~s--~~n~LLKys~K------dyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 161 AQYAAQLEQYSKAIDIYEQVARSS--LDNNLLKYSAK------DYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR 232 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--ccchHHHhHHH------HHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence 344567888999988874321111 24445544332 1234 9999999 33333 57899999999
Q ss_pred CCCC--CcccccCChhHHHHHHh
Q 005141 482 DIRF--KLGDYYDDPTVLRYLER 502 (712)
Q Consensus 482 ~~~~--sL~~yFaD~~Vq~YLe~ 502 (712)
.+.+ +|-+=-+..++..|-|.
T Consensus 233 Eckflk~L~~aieE~d~e~fte~ 255 (288)
T KOG1586|consen 233 ECKFLKDLLDAIEEQDIEKFTEV 255 (288)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHH
Confidence 9874 56666666666666554
No 99
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=22.07 E-value=1.6e+02 Score=29.58 Aligned_cols=69 Identities=17% Similarity=0.127 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHhhCCCCcccccCccccccchhhhhhhHHHHHHHHhhCChHHHHHHhc
Q 005141 350 FEAYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLG 429 (712)
Q Consensus 350 ~~~YlaalAliA~GF~~rkP~lI~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~lE~a~C~LLLGq~~eA~~~l~ 429 (712)
.+.|..+..++..| --.+|...|+.|... . |......+..+..|-|++-.|+.++|...+
T Consensus 6 ~~lY~~a~~~~~~g-------~y~~Ai~~f~~l~~~----~--------P~s~~a~~A~l~la~a~y~~~~y~~A~~~~- 65 (203)
T PF13525_consen 6 EALYQKALEALQQG-------DYEEAIKLFEKLIDR----Y--------PNSPYAPQAQLMLAYAYYKQGDYEEAIAAY- 65 (203)
T ss_dssp HHHHHHHHHHHHCT--------HHHHHHHHHHHHHH-------------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHH-
T ss_pred HHHHHHHHHHHHCC-------CHHHHHHHHHHHHHH----C--------CCChHHHHHHHHHHHHHHHcCCHHHHHHHH-
Confidence 45777777777665 246899999999865 1 223345788999999999999999999886
Q ss_pred cCCCCCCCCChHHHHHHHhhCC
Q 005141 430 LDSDKSPYRNPAIVDFVLENSK 451 (712)
Q Consensus 430 l~~~~s~~~d~~~~~fI~~~S~ 451 (712)
..||..|+.
T Consensus 66 -------------~~fi~~yP~ 74 (203)
T PF13525_consen 66 -------------ERFIKLYPN 74 (203)
T ss_dssp -------------HHHHHH-TT
T ss_pred -------------HHHHHHCCC
Confidence 478999885
No 100
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=21.88 E-value=3.9e+02 Score=23.97 Aligned_cols=43 Identities=12% Similarity=0.127 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhhCCCCcccccCccccccchhhhhhhHHHHHHHHhhCChHHHHHHhc
Q 005141 372 IADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLG 429 (712)
Q Consensus 372 I~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~lE~a~C~LLLGq~~eA~~~l~ 429 (712)
..+|..++++.... .....+++..+|.|+..+|+.++|..++.
T Consensus 67 ~~~A~~~~~~~~~~---------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 109 (135)
T TIGR02552 67 YEEAIDAYALAAAL---------------DPDDPRPYFHAAECLLALGEPESALKALD 109 (135)
T ss_pred HHHHHHHHHHHHhc---------------CCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 46788888877643 12236899999999999999999999984
No 101
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=21.86 E-value=86 Score=34.09 Aligned_cols=55 Identities=18% Similarity=0.057 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHHHHhCC-CCCCCC----hHHHHHHHHHHHHHHHHcCCchhhHHHhhcc
Q 005141 102 HFLGDGIRRAYEARISKP-PQYGFS----PDALISRRQILQAACETLANASSRREYNQGL 156 (712)
Q Consensus 102 ~As~eEIKkAYRkla~~~-PDk~~s----~~a~~~RfqlI~eAYeVLSDp~~R~~YD~~L 156 (712)
-++..+|+.+|+.....| |+.... ....++-++.|..||++|.+.++|..+|...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~ 62 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD 62 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 357789999999998874 775421 1134566889999999999976665655543
No 102
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=21.41 E-value=4.8e+02 Score=23.36 Aligned_cols=75 Identities=15% Similarity=0.065 Sum_probs=48.6
Q ss_pred HHHHhhhHHHHHHHHHHHhhhcCCCChhhHHHHHHHHHhhHhhHHHHHcCCCchhhHhHHHHHHHHHHHHcCCCCCChHH
Q 005141 179 VLQEAGETEVVLRIGESLLRERLPKSFKQDVVLAMALAYVDISRDAMAFNPPDYIGGCEMLERALKLLQEEGASSLAPDL 258 (712)
Q Consensus 179 LLqElGe~~~vl~lg~~~Lq~~~~~~~~~Dv~Ls~ALA~~elarea~~~~~~~~~~aa~~Le~al~LLq~~g~~~l~p~L 258 (712)
++...|++...+++-++.+... +...++....|..| +.. .++..|...+++++++-.... .+..+
T Consensus 60 ~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~la~~~-------~~~--g~~~~A~~~~~~al~~~p~~~---~~~~~ 124 (135)
T TIGR02552 60 CCQMLKEYEEAIDAYALAAALD---PDDPRPYFHAAECL-------LAL--GEPESALKALDLAIEICGENP---EYSEL 124 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC---CCChHHHHHHHHHH-------HHc--CCHHHHHHHHHHHHHhccccc---hHHHH
Confidence 4456788888888777777532 22344444444433 223 359999999999999865443 46677
Q ss_pred HHHHHHHhHh
Q 005141 259 QAQIDETLEE 268 (712)
Q Consensus 259 q~eI~~~L~~ 268 (712)
...+...|+-
T Consensus 125 ~~~~~~~~~~ 134 (135)
T TIGR02552 125 KERAEAMLES 134 (135)
T ss_pred HHHHHHHHhc
Confidence 7777777664
No 103
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=20.71 E-value=4.3e+02 Score=31.78 Aligned_cols=160 Identities=15% Similarity=0.145 Sum_probs=88.9
Q ss_pred hhhHhHHHHHHHHHHHHcCC-CCCChHHHHHHHHHhHhhChhhHHHhhCCCCChhhHHHHHHHHHHHHHHHHHhCCCCCC
Q 005141 232 YIGGCEMLERALKLLQEEGA-SSLAPDLQAQIDETLEEINPRCVLELLGLPLSGEYQARREEGLHGMLNILWAVGGGGAT 310 (712)
Q Consensus 232 ~~~aa~~Le~al~LLq~~g~-~~l~p~Lq~eI~~~L~~L~P~riLELLalPl~~e~~~~Rq~GL~lLr~lL~~rgg~G~~ 310 (712)
|...-+-+++|+.|++ +|. +.-+.-+.+.|.++=....-.+-|.+.---.+ .=+.||.+|+.-|.-
T Consensus 282 ~~~~pdPf~eG~~lm~-nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE-----~E~~ai~AL~rcl~L------- 348 (579)
T KOG1125|consen 282 YIDHPDPFKEGCNLMK-NGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENE-----NEQNAISALRRCLEL------- 348 (579)
T ss_pred ccCCCChHHHHHHHHh-cCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhcc-----chHHHHHHHHHHHhc-------
Confidence 3333344555555554 342 11134556667766666666666665555443 348899999999882
Q ss_pred ccCCCCChHHHHHHHHhhhcHHHHH---HhhhcCCCCCCchhHHHHHHHHHHHHhhhccCC---------CchHHHHHHH
Q 005141 311 AIAGGFTRESFMNEAFLRMTSAEQV---KLFSATPNSIPAETFEAYGVALALVAQAFVGKQ---------PHLIADADNM 378 (712)
Q Consensus 311 ~~~~gl~~~dFl~q~~~~LTa~EQv---dLF~~~~~~~s~~a~~~YlaalAliA~GF~~rk---------P~lI~~A~~~ 378 (712)
.+. +.+..|.=+.+|---..|+ +.|..|-.+-+ .|.|++..=...+ +....+-+.+
T Consensus 349 --dP~-NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p---------~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~ 416 (579)
T KOG1125|consen 349 --DPT-NLEALMALAVSYTNEGLQNQALKMLDKWIRNKP---------KYVHLVSAGENEDFENTKSFLDSSHLAHIQEL 416 (579)
T ss_pred --CCc-cHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCc---------cchhccccCccccccCCcCCCCHHHHHHHHHH
Confidence 111 5667777666776666665 34445522211 1112211101111 1222233333
Q ss_pred HHHH-hhCCCCcccccCccccccchhhhhhhHHHHHHHHhhCChHHHHHHhcc
Q 005141 379 FKHL-QQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLGL 430 (712)
Q Consensus 379 l~~L-~~~~~~~~~~~~~~~~~~~~~~~Dv~lE~a~C~LLLGq~~eA~~~l~l 430 (712)
|-.. .+.+ .....||+...||.+-|.|+.+.|..+|+.
T Consensus 417 fLeaa~~~~--------------~~~DpdvQ~~LGVLy~ls~efdraiDcf~~ 455 (579)
T KOG1125|consen 417 FLEAARQLP--------------TKIDPDVQSGLGVLYNLSGEFDRAVDCFEA 455 (579)
T ss_pred HHHHHHhCC--------------CCCChhHHhhhHHHHhcchHHHHHHHHHHH
Confidence 3333 3331 123479999999999999999999999953
No 104
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=20.42 E-value=1.3e+02 Score=25.37 Aligned_cols=55 Identities=20% Similarity=0.270 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhhhccCCCchHHHHHHHHHHHhhCCCCcccccCccccccchhhhhhhHHHHHHHHhhCChHHHHHHhc
Q 005141 352 AYGVALALVAQAFVGKQPHLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLG 429 (712)
Q Consensus 352 ~YlaalAliA~GF~~rkP~lI~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~lE~a~C~LLLGq~~eA~~~l~ 429 (712)
.|.-+.+|.-.| --.+|-.+|+++... ....+.+...|-|.+=||+.++|..+|+
T Consensus 28 ~~~la~~~~~~~-------~y~~A~~~~~~~~~~----------------~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 28 LYNLAQCYFQQG-------KYEEAIELLQKLKLD----------------PSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHHHHHHTT-------HHHHHHHHHHCHTHH----------------HCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHCC-------CHHHHHHHHHHhCCC----------------CCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 344455555444 236777777663221 2235888888999999999999999884
No 105
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=20.26 E-value=1.6e+02 Score=27.92 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=35.3
Q ss_pred chHHHHHHHHHHHhhCCCCcccccCccccccchhhhhhhHHHHHHHHhhCChHHHHHHhc
Q 005141 370 HLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLG 429 (712)
Q Consensus 370 ~lI~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~lE~a~C~LLLGq~~eA~~~l~ 429 (712)
....+|...+++.... .....+.++-.|+|..-+|+.++|...+.
T Consensus 72 g~~~~A~~~y~~Al~l---------------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~ 116 (144)
T PRK15359 72 KEYTTAINFYGHALML---------------DASHPEPVYQTGVCLKMMGEPGLAREAFQ 116 (144)
T ss_pred hhHHHHHHHHHHHHhc---------------CCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3566788888877654 12236899999999999999999999984
No 106
>PF06287 DUF1039: Protein of unknown function (DUF1039); InterPro: IPR010437 This family describes a small protein, always smaller than 100 amino acids, encoded in pathogenicity islands for bacterial type III secretion systems in various strains of Yersinia, Salmonella, and enteropathogenic Escherichia coli, as well as Chromobacterium violaceum and Citrobacter rodentium. Although strictly associated with type III secretion systems, this protein seems not yet to have been characterised as part of the apparatus or as an effector protein.
Probab=20.24 E-value=2.4e+02 Score=24.71 Aligned_cols=45 Identities=20% Similarity=0.180 Sum_probs=36.4
Q ss_pred chHHHHHHHHHHHhhCCCCcccccCccccccchhhhhhhHHHHHHHHhhCChHHHHHHhc
Q 005141 370 HLIADADNMFKHLQQNKVPTLRDLGSIYIPLEKHEMEFALERGLCSLLVGKLDECRLWLG 429 (712)
Q Consensus 370 ~lI~~A~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~Dv~lE~a~C~LLLGq~~eA~~~l~ 429 (712)
-+..+|+.|+..|.+- .....|-.+=+++|.+=||+.++|.+.|.
T Consensus 7 gL~~ea~aIL~alP~L---------------i~D~~~r~~c~alllfGL~~~~~Al~~L~ 51 (66)
T PF06287_consen 7 GLLKEARAILNALPQL---------------IPDEEDRAVCEALLLFGLGEQAAALQLLA 51 (66)
T ss_pred ccHHHHHHHHHhchhh---------------cCCHhHHHHHHHHHHHHcCChHHHHHHHh
Confidence 3678999999999865 12335777888899999999999999995
Done!